BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001267
         (1112 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa]
 gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score = 1156 bits (2991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/781 (72%), Positives = 638/781 (81%), Gaps = 38/781 (4%)

Query: 315  GTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDT 374
            G G N++        KL+I R +L S Y +V+VVDNV+ AK+VV  LTN+Y+HL+HACDT
Sbjct: 16   GIGSNEQVQTKGRPHKLDI-RERLTSIYESVLVVDNVTMAKEVVSKLTNQYRHLIHACDT 74

Query: 375  EVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFED 434
            EVA+IDVK+ETP+DHGE+ C SIY GPEADFG+GKSCIWVD+LDGGGRDLLNEFA FFED
Sbjct: 75   EVARIDVKEETPIDHGEITCLSIYCGPEADFGHGKSCIWVDVLDGGGRDLLNEFALFFED 134

Query: 435  PSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVM 494
            P IKKVWHNYSFDNHV+ENYG  VSGFHADTMHMARLWDSSRR +GGYSLEALTGD+KVM
Sbjct: 135  PDIKKVWHNYSFDNHVIENYGFSVSGFHADTMHMARLWDSSRRLKGGYSLEALTGDQKVM 194

Query: 495  SEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL 554
                  Y++           +GK+SMK IFG++KLKKDGS GK++ IAPVEELQREERE 
Sbjct: 195  RGAGSCYKE----------LIGKVSMKTIFGKKKLKKDGSEGKMTIIAPVEELQREEREP 244

Query: 555  WISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMET 614
            WI YSA D+I+TL+LYKS++ +L +M W LDGK V  KSMFDFYQEYWQPFGEILV+MET
Sbjct: 245  WICYSALDAISTLQLYKSMESELSKMPWNLDGKRVFQKSMFDFYQEYWQPFGEILVRMET 304

Query: 615  EGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPN 674
            EGMLVDR YL+E+EKVA+AEQE A NRFR WA K+CPDAKYMNVGSDTQLRQLLFGG PN
Sbjct: 305  EGMLVDRAYLAEVEKVAKAEQEVAANRFRNWACKYCPDAKYMNVGSDTQLRQLLFGGVPN 364

Query: 675  SKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGG 734
            SKD   +LP ++ FKVPN + VI EGKKTP+K+RNI L SIGVDLP E YTA+GWPSV G
Sbjct: 365  SKDPLLTLPEDKTFKVPNVDKVIEEGKKTPTKYRNIKLCSIGVDLPIETYTASGWPSVSG 424

Query: 735  DALKTLARNISAEYDCVDGAHD----------LDDSGCT--EETEYKGAVASNN------ 776
             ALK LA  IS   D V  A+D          LDDSG    E++  +G+   N       
Sbjct: 425  VALKALAGKIS---DAVSDANDAAGLQLDDAVLDDSGTMTDEDSNSEGSYVENKVESEYV 481

Query: 777  ---KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTE 833
               + F T +E  EAC AI++LCEVCSIDSLISNFILPLQ S++SGK GRVHCSLNINTE
Sbjct: 482  AGLRRFQTPEEGIEACHAIASLCEVCSIDSLISNFILPLQSSDISGKGGRVHCSLNINTE 541

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLSARRPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLANCKSMLD
Sbjct: 542  TGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLD 601

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKM 950
            AFKAGGDFHSRTAMNMYPHIR A+E  QVLLEW+   GE+KPPVPLLKDAFASERRKAKM
Sbjct: 602  AFKAGGDFHSRTAMNMYPHIREAIEKKQVLLEWYPQPGENKPPVPLLKDAFASERRKAKM 661

Query: 951  LNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLL 1010
            LNFSIAYGKTPVGL+RDWKVSV EAK+TV+LWY ER+EVL WQ+ARKKE+R +  V+TLL
Sbjct: 662  LNFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVLKWQQARKKEARENGRVYTLL 721

Query: 1011 GRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQ 1070
            GRAR FP++   + S R H+ERAAINTPVQGSAADVAMCAMLEISKN RL+ELGWKLLLQ
Sbjct: 722  GRARVFPSLTDASSSLRGHVERAAINTPVQGSAADVAMCAMLEISKNTRLQELGWKLLLQ 781

Query: 1071 V 1071
            V
Sbjct: 782  V 782


>gi|224117482|ref|XP_002317586.1| predicted protein [Populus trichocarpa]
 gi|222860651|gb|EEE98198.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score = 1151 bits (2977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/778 (72%), Positives = 633/778 (81%), Gaps = 32/778 (4%)

Query: 315  GTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDT 374
            G+G   KA  N    K  I   +L + Y  V+VVDN S A++VV  LTN+Y+HL+HACDT
Sbjct: 16   GSGSTDKAQTNGRPHKPGI-HERLTNIYERVLVVDNASMAREVVSKLTNQYRHLIHACDT 74

Query: 375  EVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFED 434
            EVAKI+VK+ETP+DHGE+ CFSIYSGPEADFGNGKSCIWVD+LDGGGRDLL+EFAPFFE 
Sbjct: 75   EVAKIEVKEETPIDHGEITCFSIYSGPEADFGNGKSCIWVDVLDGGGRDLLHEFAPFFES 134

Query: 435  PSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVM 494
            P IKKVWHNYSFDNHV+ENYG+ VSGFHADTMHMARLWDSSRR  GGYSLEALTGD+KVM
Sbjct: 135  PDIKKVWHNYSFDNHVIENYGISVSGFHADTMHMARLWDSSRRINGGYSLEALTGDQKVM 194

Query: 495  SEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL 554
               +  Y++           +GK+SMK+IFG++K+KKDGS GK++TIAPVEELQRE RE 
Sbjct: 195  RGAEPCYKE----------LIGKVSMKNIFGKKKVKKDGSEGKLTTIAPVEELQREAREP 244

Query: 555  WISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMET 614
            WI YSA D+I+TL+LYKSL+ +L +M W +DGKPV  KSMFDFY EYWQPFGEILV+MET
Sbjct: 245  WICYSALDAISTLQLYKSLESQLSKMPWNMDGKPVLKKSMFDFYLEYWQPFGEILVRMET 304

Query: 615  EGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPN 674
            EGMLVDR YL+  EKVA+AEQE A +RFRKWAS++CPDAKYMNVGSDTQLRQLLFGG  N
Sbjct: 305  EGMLVDRAYLAVTEKVAKAEQEVAASRFRKWASRYCPDAKYMNVGSDTQLRQLLFGGICN 364

Query: 675  SKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGG 734
            SKD   +LP  + FKVPN + VI EGKKTP+KF +I L SI VDLP E YTA+GWPSV G
Sbjct: 365  SKDPLVTLPEVKTFKVPNVDKVIEEGKKTPTKFCDIKLCSIRVDLPVETYTASGWPSVSG 424

Query: 735  DALKTLARNISAEYDCVDGAHD------LDDSGCTE------------ETEYKGAVASNN 776
            DALKTLAR IS+EY   D A         DDS                E E +     N 
Sbjct: 425  DALKTLARKISSEYVVNDAAGSQLDDVVFDDSETMTDEDLESKELSVVENEDESGHVGNL 484

Query: 777  KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGR 836
            + F T +E  EAC AIS+LCE+CSIDSLISNFILPLQ SN+SGK+GRVHCSLNINTETGR
Sbjct: 485  RRFQTPEEGIEACHAISSLCELCSIDSLISNFILPLQSSNLSGKSGRVHCSLNINTETGR 544

Query: 837  LSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
            LSARRPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELR+LAHLANCKSMLDAFK
Sbjct: 545  LSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRVLAHLANCKSMLDAFK 604

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNF 953
            AGGDFHSRTA+NMYPHIR A+E  +VLLEW+   GEDKPPVPLLKDAFASERRKAKMLNF
Sbjct: 605  AGGDFHSRTAVNMYPHIREAIEKKRVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNF 664

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
            SIAYGKTPVGL+RDWKVSV EAK+TV+LWY ER+EVL WQ+ARKKE+R D  VHTLLGRA
Sbjct: 665  SIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVLKWQQARKKEAREDGRVHTLLGRA 724

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R FP++   + S R H+ERAAINTPVQGSAADVAMCAMLEISKN RLKELGWKLLLQV
Sbjct: 725  RVFPSLTDASSSLRGHVERAAINTPVQGSAADVAMCAMLEISKNNRLKELGWKLLLQV 782


>gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis]
 gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis]
          Length = 963

 Score = 1143 bits (2956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/774 (71%), Positives = 632/774 (81%), Gaps = 32/774 (4%)

Query: 315  GTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDT 374
              G  +K S  + + +   ++ +L S +  ++VV+++S A  +V  LTN+Y+HL+HACDT
Sbjct: 152  AVGDAEKFSNTKEASRHPDVKRRLTSIFGKILVVNDMSMADGIVKKLTNEYRHLIHACDT 211

Query: 375  EVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFED 434
            EVAKIDVKQETPV HGE+ICFSIYSGPEADFGNG SCIWVD+LDGGGRDLL +F PFFE+
Sbjct: 212  EVAKIDVKQETPVGHGEIICFSIYSGPEADFGNGTSCIWVDVLDGGGRDLLVKFKPFFEN 271

Query: 435  PSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVM 494
            P IKKVWHNYSFD HV++NY + V GFHADTMHMARLW+SSRRTEGGYSLEALTGD++VM
Sbjct: 272  PEIKKVWHNYSFDKHVIQNYEVPVCGFHADTMHMARLWNSSRRTEGGYSLEALTGDKRVM 331

Query: 495  SEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL 554
            S  +  +          EG +GK+SMK IFG+ KLKKDGS GK+ T+APVEELQREERE 
Sbjct: 332  SGAQSCF----------EGLIGKVSMKTIFGKNKLKKDGSEGKMITVAPVEELQREEREP 381

Query: 555  WISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMET 614
            WI YSA D+I+T +LY+SLK+KL  M W L+GKPV GKSM DFY+EYW+PFGE+LV+MET
Sbjct: 382  WICYSALDAISTWQLYESLKRKLFHMPWNLNGKPV-GKSMLDFYKEYWRPFGELLVRMET 440

Query: 615  EGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPN 674
            EG+LVDR YL+EIEKVA+ EQE AVNRFR WA K+CPDAKYMNVGSDTQLRQL FGG  N
Sbjct: 441  EGILVDRAYLAEIEKVAKVEQEIAVNRFRNWACKYCPDAKYMNVGSDTQLRQLFFGGIAN 500

Query: 675  SKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGG 734
            SKD    LP+E+  KVPN + VI EGKK P+KF +ITL  IG + P EMYTATGWPSV G
Sbjct: 501  SKDPDSILPVEKKIKVPNVDKVIEEGKKAPTKFCSITLHKIG-NFPAEMYTATGWPSVSG 559

Query: 735  DALKTLARNISAEYDCVDGAHDLDDSGC----TEETEYK----------GAVASNNKIFA 780
            DALKTLA  +SAEYD VD   D+ + GC    TE +E +           A  +  K F 
Sbjct: 560  DALKTLAGKVSAEYDFVD---DIVEDGCELETTEGSETQVPSVLKDVDTSAYGTALKAFP 616

Query: 781  TEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSAR 840
            + +E  EAC AI++LCEVCSIDSLISNFILPLQGSNVSGK GRVHCSLNINTETGRLSAR
Sbjct: 617  SLEEGIEACHAIASLCEVCSIDSLISNFILPLQGSNVSGKRGRVHCSLNINTETGRLSAR 676

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
            RPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLANCKSML+AFKAGGD
Sbjct: 677  RPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLEAFKAGGD 736

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            FHSRTAMNMYPHI  AV+ G+VLLEW    GE+KPPVPLLKDAF SERRKAKMLNFSIAY
Sbjct: 737  FHSRTAMNMYPHIHEAVDKGEVLLEWDPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAY 796

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            GKTPVGLARDWKVS+EEAK+TV+LWY ERQEVL WQEARKKE+R D  VHTLLGRAR FP
Sbjct: 797  GKTPVGLARDWKVSIEEAKETVNLWYRERQEVLKWQEARKKEAREDGRVHTLLGRARVFP 856

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +I   + +Q+ HIERAAINTPVQGSAADVAMCAML+IS+N RLKELGWKLLLQ+
Sbjct: 857  SISHASNAQKRHIERAAINTPVQGSAADVAMCAMLQISRNKRLKELGWKLLLQI 910


>gi|356499384|ref|XP_003518521.1| PREDICTED: uncharacterized protein LOC100797016 [Glycine max]
          Length = 1077

 Score = 1135 bits (2936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/751 (72%), Positives = 624/751 (83%), Gaps = 22/751 (2%)

Query: 334  LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
            LR +L S Y +++VVDN+  A++V  MLT KY+HL++ACDTEVAKIDVKQETPVDHGE+ 
Sbjct: 284  LRDRLCSIYDDILVVDNIPLAEEVSKMLTTKYRHLIYACDTEVAKIDVKQETPVDHGEIT 343

Query: 394  CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
            CFSIY GPEADFG GKSCIWVD+LDGGG+++L +FA FF D SIKKVWHNYSFD HV+EN
Sbjct: 344  CFSIYCGPEADFGGGKSCIWVDVLDGGGKEILEKFAEFFSDSSIKKVWHNYSFDCHVIEN 403

Query: 454  YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
            YG KVSGFHADTMHMARLWDSSR  +GGYSLE LTGDR+VMS  +  ++KD++       
Sbjct: 404  YGFKVSGFHADTMHMARLWDSSRHLDGGYSLEGLTGDRRVMSRAQLNHEKDLT------- 456

Query: 514  FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
              GK+SMK IF ++KLKKDGS GK S IAPVEELQREER  WI YSA D+ +TLKLY+SL
Sbjct: 457  --GKVSMKTIFSKKKLKKDGSEGKTSIIAPVEELQREERIPWICYSALDASSTLKLYESL 514

Query: 574  KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
            K  L +M WK DG PV GK+M+DFY EYW+PFGE+LV ME+EGMLVDR YL  IEKVA+A
Sbjct: 515  KSHLSDMPWKFDGLPVYGKTMYDFYNEYWRPFGELLVMMESEGMLVDRAYLESIEKVAKA 574

Query: 634  EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNT 693
            EQE AVNRFRKWA+++CPDA+YMNVGSD+QLRQLLFGG  N KD S++LP ERIFK+PN 
Sbjct: 575  EQEVAVNRFRKWATRYCPDAQYMNVGSDSQLRQLLFGGIVNRKDSSQTLPTERIFKIPNV 634

Query: 694  EGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDG 753
            + VI EGKK P KFR+I L S+G +L TEMYTATGWPSV GDALK LA +ISA+YD  D 
Sbjct: 635  DNVIEEGKKAPKKFRDIKLTSLGYNLETEMYTATGWPSVSGDALKALAGSISADYDFFDE 694

Query: 754  AHDLDDSGCTEETEYKGAVASNN----------KIFATEQEAREACDAISALCEVCSIDS 803
              +LDD    +E   +  VAS              F TE+E REAC AI+ALC+VCSI+S
Sbjct: 695  DCNLDDLDDEDENPSQSQVASVKIDKSAYGTAYAAFPTEEEGREACHAIAALCQVCSINS 754

Query: 804  LISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            LISNFILPLQG N+SGK+ RVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA
Sbjct: 755  LISNFILPLQGHNISGKDLRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 814

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
             PGNSLIVADYGQLELRILAHLA+CKSML+AF+AGGDFHSRTAMNMYPHIR AVE  +VL
Sbjct: 815  APGNSLIVADYGQLELRILAHLADCKSMLEAFEAGGDFHSRTAMNMYPHIREAVEKKEVL 874

Query: 924  LEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVD 980
            LEWH   GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGL++DWKVSV+EAKKTVD
Sbjct: 875  LEWHPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSVKEAKKTVD 934

Query: 981  LWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQ 1040
            LWYN+R+EVL WQE RKKE+R+ + V+TLLGRARRFP +      Q+ HIERAAINTPVQ
Sbjct: 935  LWYNDRKEVLQWQEERKKEARVLHCVYTLLGRARRFPLMAQANTYQKGHIERAAINTPVQ 994

Query: 1041 GSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            GSAADVAMCAML+ISKN RLKELGWKLLLQV
Sbjct: 995  GSAADVAMCAMLQISKNKRLKELGWKLLLQV 1025


>gi|225461738|ref|XP_002283388.1| PREDICTED: uncharacterized protein LOC100257153 [Vitis vinifera]
          Length = 1034

 Score = 1134 bits (2933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/754 (73%), Positives = 618/754 (81%), Gaps = 28/754 (3%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R KL+  Y  V++VD++  AKK+V  LT +YKHL+HACDTEVA IDVK+ETPVDHGE+IC
Sbjct: 240  RRKLSKIYEKVLIVDDIYVAKKIVRKLTTQYKHLIHACDTEVANIDVKRETPVDHGEIIC 299

Query: 395  FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
            FSIYSGPEADFGNGKSCIWVD+LDGGGRDLL EFAPFFEDPSI+KVWHNYSFDNHV+ENY
Sbjct: 300  FSIYSGPEADFGNGKSCIWVDVLDGGGRDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY 359

Query: 455  GLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGF 514
             LKVSGFHADTMHMARLWDSSRR  GGYSLEALT D KVMS         MS G   E  
Sbjct: 360  DLKVSGFHADTMHMARLWDSSRRAVGGYSLEALTRDSKVMS------GAHMSNG---EEL 410

Query: 515  MGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLK 574
            +GK+SMK IFG++KLKKDG+ GKI TIAPVE LQRE+R+ WISYSA DS++TLKLY+S+K
Sbjct: 411  IGKVSMKTIFGKKKLKKDGTEGKIITIAPVEVLQREDRKPWISYSALDSMSTLKLYESMK 470

Query: 575  KKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAE 634
             KLL+  W LDG       MFDFYQ+YW+PFGE+LV+METEGMLVDR YLS++EKVA+AE
Sbjct: 471  NKLLDKEWLLDG--ARKGCMFDFYQKYWRPFGELLVQMETEGMLVDRAYLSKVEKVAKAE 528

Query: 635  QEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTE 694
            ++ A NRFR WASKHCPDAKYMNVGSDTQLRQLLFGG  N KD +E LP+E+ FK+PN +
Sbjct: 529  EQVAANRFRNWASKHCPDAKYMNVGSDTQLRQLLFGGVANRKDPNECLPMEKTFKIPNVD 588

Query: 695  GVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGA 754
             VI EGKK P+KFRNITL S  V++P EM TA+GWPSV GDALKTLA  +SA++D +D A
Sbjct: 589  KVIEEGKKAPTKFRNITLSSFDVEIPIEMCTASGWPSVSGDALKTLAGKVSADFDFIDDA 648

Query: 755  H-DLDDSGCTEETEYKG-------------AVASNNKIFATEQEAREACDAISALCEVCS 800
              D + +   +  E  G             A  +    F   QE R+AC AI+ALCEVCS
Sbjct: 649  ECDFETTAIEKIDEVPGTRGPKESEDTDISAYGTAYAAFGEGQEGRKACHAIAALCEVCS 708

Query: 801  IDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA 860
            I+SLISNFILPLQ   +SGKNGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA
Sbjct: 709  INSLISNFILPLQDGEISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA 768

Query: 861  FIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETG 920
            FIA PGNSLIVADYGQLELRILAHLANCKSML+AFKAGGDFHSRTAMNMYPHIR AVE  
Sbjct: 769  FIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKR 828

Query: 921  QVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKK 977
            +VLLEWH   GEDKPPVPLLKDAF SERRKAKMLNFSIAYGKT VGLARDWKVSV EA++
Sbjct: 829  EVLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARE 888

Query: 978  TVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINT 1037
            TV+ WY ER+EVL WQE RKKE+    +V TLLGRAR FP++   T SQR HIERAAINT
Sbjct: 889  TVERWYKERKEVLAWQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQRGHIERAAINT 948

Query: 1038 PVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            PVQGSAADVAMCAMLEIS+NARLKELGWKLLLQV
Sbjct: 949  PVQGSAADVAMCAMLEISRNARLKELGWKLLLQV 982


>gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera]
          Length = 1118

 Score = 1132 bits (2928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/754 (73%), Positives = 618/754 (81%), Gaps = 28/754 (3%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R KL+  Y  V++VD++  AKK+V  LT +YKHL+HACDTEVA IDVK+ETPVDHGE+IC
Sbjct: 324  RRKLSKIYEKVLIVDDIYVAKKIVRKLTTQYKHLIHACDTEVANIDVKRETPVDHGEIIC 383

Query: 395  FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
            FSIYSGPEADFGNGKSCIWVD+LDGGGRDLL EFAPFFEDPSI+KVWHNYSFDNHV+ENY
Sbjct: 384  FSIYSGPEADFGNGKSCIWVDVLDGGGRDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY 443

Query: 455  GLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGF 514
             LKVSGFHADTMHMARLWDSSRR  GGYSLEALT D KVMS         MS G   E  
Sbjct: 444  DLKVSGFHADTMHMARLWDSSRRAVGGYSLEALTRDSKVMS------GAHMSNG---EEL 494

Query: 515  MGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLK 574
            +GK+SMK IFG++KLKKDG+ GKI TIAPVE LQRE+R+ WISYSA DS++TLKLY+S+K
Sbjct: 495  IGKVSMKTIFGKKKLKKDGTEGKIITIAPVEVLQREDRKPWISYSALDSMSTLKLYESMK 554

Query: 575  KKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAE 634
             KLL+  W LDG       MFDFYQ+YW+PFGE+LV+METEGMLVDR YLS++EKVA+AE
Sbjct: 555  NKLLDKEWLLDG--ARKGCMFDFYQKYWRPFGELLVQMETEGMLVDRAYLSKVEKVAKAE 612

Query: 635  QEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTE 694
            ++ A NRFR WASKHCPDAKYMNVGSDTQLRQLLFGG  N KD +E LP+E+ FK+PN +
Sbjct: 613  EQVAANRFRNWASKHCPDAKYMNVGSDTQLRQLLFGGVANRKDPNECLPMEKTFKIPNVD 672

Query: 695  GVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGA 754
             VI EGKK P+KFRNITL S  V++P EM TA+GWPSV GDALKTLA  +SA++D +D A
Sbjct: 673  KVIEEGKKAPTKFRNITLSSFDVEIPIEMCTASGWPSVSGDALKTLAGKVSADFDFIDDA 732

Query: 755  H-DLDDSGCTEETEYKG-------------AVASNNKIFATEQEAREACDAISALCEVCS 800
              D + +   +  E  G             A  +    F   QE R+AC AI+ALCEVCS
Sbjct: 733  ECDFETTAIEKIDEVPGTRGPKESEDTDISAYGTAYAAFGEGQEGRKACHAIAALCEVCS 792

Query: 801  IDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA 860
            I+SLISNFILPLQ   +SGKNGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA
Sbjct: 793  INSLISNFILPLQDGEISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA 852

Query: 861  FIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETG 920
            FIA PGNSLIVADYGQLELRILAHLANCKSML+AFKAGGDFHSRTAMNMYPHIR AVE  
Sbjct: 853  FIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKR 912

Query: 921  QVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKK 977
            +VLLEWH   GEDKPPVPLLKDAF SERRKAKMLNFSIAYGKT VGLARDWKVSV EA++
Sbjct: 913  EVLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARE 972

Query: 978  TVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINT 1037
            TV+ WY ER+EVL WQE RKKE+    +V TLLGRAR FP++   T SQR HIERAAINT
Sbjct: 973  TVERWYKERKEVLAWQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQRGHIERAAINT 1032

Query: 1038 PVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            PVQGSAADVAMCAMLEIS+NARLKELGWKLLLQV
Sbjct: 1033 PVQGSAADVAMCAMLEISRNARLKELGWKLLLQV 1066


>gi|449513483|ref|XP_004164337.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101212518 [Cucumis
            sativus]
          Length = 1126

 Score = 1130 bits (2922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/841 (67%), Positives = 658/841 (78%), Gaps = 34/841 (4%)

Query: 251  LRYEKEVAEYQERKGATVLTVPNLS-DFRNSEIECFEDGSSYTPPPKLVSFKRSNQKNPK 309
            ++ +K+    Q  KG+ V  VP++S + RN      +  S     PK + F  +      
Sbjct: 248  MQSKKKCTSSQIGKGSIVPLVPDVSLNGRNQSTSLGKVNSV----PKTLKFTEAANGMEG 303

Query: 310  NDAAEG------TGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTN 363
            + A E        G   K  E   +     ++ +L   Y +V+VVD+VSAAK+VV MLT 
Sbjct: 304  SVAVEKMSKRIINGSGTKVMEAPATACKPDIKERLIGVYDSVLVVDSVSAAKEVVSMLTT 363

Query: 364  KYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRD 423
            KY++LVHACDTEVAKIDVKQETP+DHGEVICFSIYSGP ADFGNGKSCIWVD+LDGGG++
Sbjct: 364  KYRNLVHACDTEVAKIDVKQETPIDHGEVICFSIYSGPGADFGNGKSCIWVDVLDGGGKE 423

Query: 424  LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
            +L +FAPFFEDP I+KVWHNYSFDNH++ENYG+K+SGFHADTMHMARLWDSSRR  GGYS
Sbjct: 424  ILLQFAPFFEDPLIRKVWHNYSFDNHIIENYGIKLSGFHADTMHMARLWDSSRRVSGGYS 483

Query: 484  LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
            LEAL+ DRKVMS+ +   +K++         +GK+SMK IFGR+K K DGS GK+  I P
Sbjct: 484  LEALSSDRKVMSDAELGEEKEL---------IGKVSMKTIFGRKKKKMDGSEGKLVVIPP 534

Query: 544  VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            VEELQREER+ W+SYSA DSI TLKLY+SLK KL  M W+ +G+ +PG++M +FY+EYW+
Sbjct: 535  VEELQREERKPWVSYSALDSICTLKLYESLKNKLSHMPWERNGEAIPGQTMINFYEEYWK 594

Query: 604  PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
            PFGE+LVKMETEGMLVDR YL+EIEK+A  EQE A N+FR WASK+C DAKYMNVGSD Q
Sbjct: 595  PFGELLVKMETEGMLVDRSYLAEIEKLAIVEQEVAANKFRNWASKYCSDAKYMNVGSDAQ 654

Query: 664  LRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSI-GVDLPTE 722
            +RQLLFGG  NSK+  E LP ER FKVPN+E VI EGKK P KFRNITL  I      TE
Sbjct: 655  VRQLLFGGACNSKNPVEFLPTERTFKVPNSEKVIQEGKKLPXKFRNITLHCIKDKAFSTE 714

Query: 723  MYTATGWPSVGGDALKTLARNISAEYD------CVDGAHDLDDSGCTEETEYKGAVASNN 776
            +YTA+GWPSVG DALK LA  +SAE+D      C D   D D      E E KG ++ N+
Sbjct: 715  IYTASGWPSVGVDALKILAGKVSAEFDDIANDLCFDNEVDKDFEMMPHE-ESKGHLSDND 773

Query: 777  ---KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTE 833
               K F + +E++EAC AI+ALCEVCSID+LISNFILPLQGSN+SGKNGRVHCSLNINTE
Sbjct: 774  TALKEFKSLEESKEACHAIAALCEVCSIDTLISNFILPLQGSNISGKNGRVHCSLNINTE 833

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLSARRPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLANCKSML+
Sbjct: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLE 893

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKM 950
            AFKAGGDFHSRTAMNMYPHI+ AVE G VLLEW    G++KPPVPLLKDAFASERRKAKM
Sbjct: 894  AFKAGGDFHSRTAMNMYPHIKKAVEEGSVLLEWDPQPGQEKPPVPLLKDAFASERRKAKM 953

Query: 951  LNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLL 1010
            LNFSIAYGKTPVGL+RDWKVS+EEAKKTV LWYNER+EV  WQ+ R  E+   + V TLL
Sbjct: 954  LNFSIAYGKTPVGLSRDWKVSLEEAKKTVKLWYNERKEVREWQDLRMAEAAESSCVRTLL 1013

Query: 1011 GRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQ 1070
            GRAR+FP++K  TR Q+ HIERAAINTPVQGSAADVAMCAMLEISKN+RL+ELGW+LLLQ
Sbjct: 1014 GRARQFPSMKYATRFQKGHIERAAINTPVQGSAADVAMCAMLEISKNSRLRELGWRLLLQ 1073

Query: 1071 V 1071
            V
Sbjct: 1074 V 1074


>gi|356553303|ref|XP_003544996.1| PREDICTED: uncharacterized protein LOC100807239 [Glycine max]
          Length = 847

 Score = 1127 bits (2916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/750 (72%), Positives = 618/750 (82%), Gaps = 21/750 (2%)

Query: 334  LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
            LR +L S Y +++VVDN+  A++V  MLT KY+HL++ACDTEVAKIDVKQETPVDHGE+ 
Sbjct: 55   LRDRLCSIYDDILVVDNIHLAEEVAKMLTTKYRHLIYACDTEVAKIDVKQETPVDHGEIT 114

Query: 394  CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
            CFSIY GPEADFG GKSCIWVD+LDGGG+++L +FA FF D SIKKVWHNYSFD HV+EN
Sbjct: 115  CFSIYCGPEADFGGGKSCIWVDVLDGGGKEILEKFAEFFSDSSIKKVWHNYSFDCHVIEN 174

Query: 454  YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
            YG KVSGFHADTMHMARLWDSSR  +GGYSLE LTGDR+VMS  +  ++KD+        
Sbjct: 175  YGFKVSGFHADTMHMARLWDSSRHLDGGYSLEGLTGDRRVMSRAQLNHEKDL-------- 226

Query: 514  FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
             +GK+SMK IF ++KLKKDGS GK S IAPVEELQR+ER  WI YSA D+ +TLKLY+SL
Sbjct: 227  -IGKVSMKTIFSKKKLKKDGSEGKTSIIAPVEELQRDERIPWICYSALDASSTLKLYESL 285

Query: 574  KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
            K  L +M WK DG PV GK+M+DFY EYW PFGE+LV ME+EGMLVDR YL  IEKVA+A
Sbjct: 286  KSHLSDMPWKFDGVPVYGKTMYDFYNEYWCPFGELLVMMESEGMLVDRAYLESIEKVAKA 345

Query: 634  EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNT 693
            EQE AVNRFRKWA+++CPDA+YMNVGSD+QLRQLLFGG  N KD +++LP ERIFK+PN 
Sbjct: 346  EQEVAVNRFRKWATRYCPDAQYMNVGSDSQLRQLLFGGIVNRKDSNQTLPTERIFKIPNV 405

Query: 694  EGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCV-- 751
              VI EGKK P +F +I L S+G +L TEMYTATGWPSV GDALK LA +ISA+YD    
Sbjct: 406  NNVIEEGKKAPKRFCDIKLTSLGYNLETEMYTATGWPSVSGDALKALAGSISADYDFFDE 465

Query: 752  DGAHDLDD-------SGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSL 804
            D   DLDD       S        K A  +    F TE+E REAC AI+ALC+VCSI+SL
Sbjct: 466  DCNLDLDDEDENPSQSQVAPVKIDKSAYGTAYAAFPTEEEGREACHAIAALCQVCSINSL 525

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
            ISNFILPLQG N+SGK+ RVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 
Sbjct: 526  ISNFILPLQGHNISGKDLRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAA 585

Query: 865  PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLL 924
            P NSLIVADYGQLELRILAHLA+CKSML+AF+AGGDFHSRTAMNMYPHIR AVE  +VLL
Sbjct: 586  PRNSLIVADYGQLELRILAHLADCKSMLEAFEAGGDFHSRTAMNMYPHIREAVEKKEVLL 645

Query: 925  EWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDL 981
            EWH   GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGL++DWKVSV+EAKKTVDL
Sbjct: 646  EWHPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSVKEAKKTVDL 705

Query: 982  WYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQG 1041
            WYN+R+EVL WQE RKKE+R+ + V+TLLGRARRFP +      Q+ HIERAAINTPVQG
Sbjct: 706  WYNDRKEVLQWQEERKKEARVLHCVYTLLGRARRFPLMAQANTYQKGHIERAAINTPVQG 765

Query: 1042 SAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            SAADVAMCAML+ISKN RLKELGWKLLLQV
Sbjct: 766  SAADVAMCAMLQISKNKRLKELGWKLLLQV 795


>gi|449470431|ref|XP_004152920.1| PREDICTED: uncharacterized protein LOC101212518 [Cucumis sativus]
          Length = 1136

 Score = 1123 bits (2905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/851 (66%), Positives = 659/851 (77%), Gaps = 44/851 (5%)

Query: 251  LRYEKEVAEYQERKGATVLTVPNLS-DFRNSEIECFEDGSSYTPPPKLVSFKRSNQKNPK 309
            ++ +K+    Q  KG+ V  VP++S + RN      +  S     PK + F  +      
Sbjct: 248  MQSKKKCTSSQIGKGSIVPLVPDVSLNGRNQSTSLGKVNSV----PKTLKFTEAANGMEG 303

Query: 310  NDAAEG------TGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTN 363
            + A E        G   K  E   +     ++ +L   Y +V+VVD+VSAAK+VV MLT 
Sbjct: 304  SVAVEKMSKRIINGSGTKVMEAPATACKPDIKERLIGVYDSVLVVDSVSAAKEVVSMLTT 363

Query: 364  KYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD-------- 415
            KY++LVHACDTEVAKIDVKQETP+DHGEVICFSIYSGP ADFGNGKSCIWVD        
Sbjct: 364  KYRNLVHACDTEVAKIDVKQETPIDHGEVICFSIYSGPGADFGNGKSCIWVDVLDGGGKE 423

Query: 416  --LLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
              LLDGGG+++L +FAPFFEDP I+KVWHNYSFDNH++ENYG+K+SGFHADTMHMARLWD
Sbjct: 424  ILLLDGGGKEILLQFAPFFEDPLIRKVWHNYSFDNHIIENYGIKLSGFHADTMHMARLWD 483

Query: 474  SSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDG 533
            SSRR  GGYSLEAL+ DRKVMS+ +   +K++         +GK+SMK IFGR+K K DG
Sbjct: 484  SSRRVSGGYSLEALSSDRKVMSDAELGEEKEL---------IGKVSMKTIFGRKKKKMDG 534

Query: 534  SAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKS 593
            S GK+  I PVEELQREER+ W+SYSA DSI TLKLY+SLK KL  M W+ +G+ +PG++
Sbjct: 535  SEGKLVVIPPVEELQREERKPWVSYSALDSICTLKLYESLKNKLSHMPWERNGEAIPGQT 594

Query: 594  MFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDA 653
            M +FY+EYW+PFGE+LVKMETEGMLVDR YL+EIEK+A  EQE A N+FR WASK+C DA
Sbjct: 595  MINFYEEYWKPFGELLVKMETEGMLVDRSYLAEIEKLAIVEQEVAANKFRNWASKYCSDA 654

Query: 654  KYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLR 713
            KYMNVGSD Q+RQLLFGG  NSK+  E LP ER FKVPN+E VI EGKKT SKFRNITL 
Sbjct: 655  KYMNVGSDAQVRQLLFGGACNSKNPVEFLPTERTFKVPNSEKVIQEGKKTASKFRNITLH 714

Query: 714  SI-GVDLPTEMYTATGWPSVGGDALKTLARNISAEYD------CVDGAHDLDDSGCTEET 766
             I      TE+YTA+GWPSVG DALK LA  +SAE+D      C D   D D      E 
Sbjct: 715  CIKDKAFSTEIYTASGWPSVGVDALKILAGKVSAEFDDIANDLCFDNEVDKDFEMMPHE- 773

Query: 767  EYKGAVASNN---KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGR 823
            E KG ++ N+   K F + +E++EAC AI+ALCEVCSID+LISNFILPLQGSN+SGKNGR
Sbjct: 774  ESKGHLSDNDTALKEFKSLEESKEACHAIAALCEVCSIDTLISNFILPLQGSNISGKNGR 833

Query: 824  VHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILA 883
            VHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILA
Sbjct: 834  VHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILA 893

Query: 884  HLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDA 940
            HLANCKSML+AFKAGGDFHSRTAMNMYPHI+ AVE G VLLEW    G++KPPVPLLKDA
Sbjct: 894  HLANCKSMLEAFKAGGDFHSRTAMNMYPHIKKAVEEGSVLLEWDPQPGQEKPPVPLLKDA 953

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
            FASERRKAKMLNFSIAYGKTPVGL+RDWKVS+EEAKKTV LWYNER+EV  WQ+ R  E+
Sbjct: 954  FASERRKAKMLNFSIAYGKTPVGLSRDWKVSLEEAKKTVKLWYNERKEVREWQDLRMAEA 1013

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
               + V TLLGRAR+FP++K  TR Q+ HIERAAINTPVQGSAADVAMCAMLEISKN+RL
Sbjct: 1014 AESSCVRTLLGRARQFPSMKYATRFQKGHIERAAINTPVQGSAADVAMCAMLEISKNSRL 1073

Query: 1061 KELGWKLLLQV 1071
            +ELGW+LLLQV
Sbjct: 1074 RELGWRLLLQV 1084


>gi|357494395|ref|XP_003617486.1| DNA polymerase [Medicago truncatula]
 gi|355518821|gb|AET00445.1| DNA polymerase [Medicago truncatula]
          Length = 1084

 Score = 1114 bits (2881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/758 (70%), Positives = 619/758 (81%), Gaps = 33/758 (4%)

Query: 334  LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
            LR +L   Y +++VVDN+  A++VV M+T KY+HL++ACDTEVAKIDVKQETPVDHGE+ 
Sbjct: 288  LRDRLCRIYEDILVVDNIPLAEEVVKMITVKYRHLIYACDTEVAKIDVKQETPVDHGEIT 347

Query: 394  CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
            CFSIY GP+ADFG GKSCIWVD+LDGGG+++L +FA FF DPSI KVWHNYSFD HV+EN
Sbjct: 348  CFSIYGGPDADFGGGKSCIWVDVLDGGGKEILEKFANFFSDPSIMKVWHNYSFDCHVIEN 407

Query: 454  YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
            YG KVSGFHADTMHMARLWDSSR+  GGYSLE L+GD+KVMS          S+ N +E 
Sbjct: 408  YGFKVSGFHADTMHMARLWDSSRQLNGGYSLEKLSGDKKVMSR---------SQFNHEED 458

Query: 514  FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
             +GK+SMK +FG++K+KKDGS GKI TIAPVE+LQR+ER  WI YSA D+ +TL LY+SL
Sbjct: 459  LIGKVSMKTLFGKKKVKKDGSEGKIITIAPVEDLQRDERIPWICYSALDAKSTLNLYESL 518

Query: 574  KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
            K  LL+M W  DG PV GK+M+DFY EYW+PFGEILV+ME+EGMLVDREYL  IEKVA+ 
Sbjct: 519  KSYLLDMPWNFDGVPVSGKTMYDFYNEYWRPFGEILVRMESEGMLVDREYLEGIEKVAKV 578

Query: 634  EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNT 693
            EQE AV+RFRKWA ++CPDAKYMNVGSD QLRQLLFGG  N KD + +LP ERIFKVPN 
Sbjct: 579  EQEVAVDRFRKWACRYCPDAKYMNVGSDLQLRQLLFGGTLNRKDSNLALPTERIFKVPNV 638

Query: 694  EGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDG 753
            + VI EGKK P KFR++ ++S+G  L TEMYTA+GWPSV GDALK LA NIS+++D  D 
Sbjct: 639  DEVIEEGKKAPKKFRDMKVKSLGYTLKTEMYTASGWPSVSGDALKVLAGNISSDFDFTDE 698

Query: 754  AHDLD-----------------DSGCTEETEYKGAVASNNKIFATEQEAREACDAISALC 796
             ++LD                 +    + + Y  A ++    F TE+E REAC AI+ALC
Sbjct: 699  IYNLDDDHDDGDEHGNLSQNHIEVSKVDNSAYGTAFSA----FPTEKEGREACHAIAALC 754

Query: 797  EVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYK 856
            EV SI+SLISNFILPLQG N+SGK+ RVHCSLNINTETGRLSARRPNLQNQPALEKDRYK
Sbjct: 755  EVSSINSLISNFILPLQGHNISGKDNRVHCSLNINTETGRLSARRPNLQNQPALEKDRYK 814

Query: 857  IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNA 916
            IRQAFIA PGNSLIVADYGQLELRILAHLANCKSM++AFKAGGDFHSRTAMNMYP+IR A
Sbjct: 815  IRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMMEAFKAGGDFHSRTAMNMYPYIREA 874

Query: 917  VETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVE 973
            VE  +VLLEWH   GEDKPPVPLLKDAF SERRKAKMLNFSIAYGKTPVGL++DW+V+V+
Sbjct: 875  VEKKEVLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLSKDWRVTVK 934

Query: 974  EAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERA 1033
            EAKKTVDLWYN+R+EVL WQE RKKE+R  + V+TLLGRARRFP +      Q+ HIERA
Sbjct: 935  EAKKTVDLWYNDRKEVLQWQEERKKEAREYHCVYTLLGRARRFPLMAQANTYQKGHIERA 994

Query: 1034 AINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AINTPVQGSAADVAMCAM++IS N +LKELGWKLLLQV
Sbjct: 995  AINTPVQGSAADVAMCAMIQISNNKKLKELGWKLLLQV 1032


>gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score = 1112 bits (2877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/757 (71%), Positives = 618/757 (81%), Gaps = 26/757 (3%)

Query: 334  LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
            LR +L + Y  V +VDN+SAAK+VV  LT++Y+HLVHACDTEVAKIDVKQ+TPVDHGE+I
Sbjct: 351  LRERLGAMYDKVHIVDNLSAAKEVVRKLTSQYRHLVHACDTEVAKIDVKQQTPVDHGEII 410

Query: 394  CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
            CFSIYSGPEADFG+GKSCIWVD+LDG G++LL EFAPFF+DPSI+KVWHNYSFDNHV+EN
Sbjct: 411  CFSIYSGPEADFGDGKSCIWVDVLDGDGKNLLVEFAPFFQDPSIRKVWHNYSFDNHVIEN 470

Query: 454  YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
            YG KVSGFHADTMHMARLWDSSRRT GGYSLEALTGD  VM + +  + + +  G   EG
Sbjct: 471  YGFKVSGFHADTMHMARLWDSSRRTSGGYSLEALTGDSTVMRDARPVHAERLFHG---EG 527

Query: 514  FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
              GKISMK IFGR+KLKKDG+ GK++ I  VEELQ+ ERELWI YSA DSI+TL LY+SL
Sbjct: 528  LFGKISMKTIFGRKKLKKDGTEGKVTVIPSVEELQKTERELWICYSALDSISTLMLYESL 587

Query: 574  KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
            K KL +  W  DG  V   SM++FY++YW+PFGE+LV+METEG+LVDR YL+EIEKVA+A
Sbjct: 588  KNKLAKRIWTFDG--VRKGSMYEFYEKYWRPFGELLVQMETEGVLVDRAYLAEIEKVAKA 645

Query: 634  EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNT 693
            EQ+ A NRFR WA+K+C DAKYMNVGSDTQLRQL FGG  N K+  ESLP E+ FKVPN 
Sbjct: 646  EQQVAANRFRNWAAKYCHDAKYMNVGSDTQLRQLFFGGIQNRKNSDESLPYEKEFKVPNI 705

Query: 694  EGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDG 753
            + V  EGKK P+KFR I L  I   + TEMYTA+GWPSV GDALK L+  +SA++D +D 
Sbjct: 706  DKVTEEGKKAPTKFRKIRLHRICDLIDTEMYTASGWPSVSGDALKALSGKVSADFDILDE 765

Query: 754  AHDLDDSGCTEETEYKGAVASNNKI----------------FATEQEAREACDAISALCE 797
            A   D++    ET    A+A+NN++                F   Q+  EAC AI+ALCE
Sbjct: 766  AD--DNAEEDPETSIDEALATNNEVPSQEPEVSIYGSAYNAFGGGQKGIEACHAIAALCE 823

Query: 798  VCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKI 857
            +CSI SLISNFILPLQG +VSG+NGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKI
Sbjct: 824  MCSIGSLISNFILPLQGQDVSGENGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKI 883

Query: 858  RQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAV 917
            RQAF+A  GNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY HIR AV
Sbjct: 884  RQAFVAAQGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYTHIREAV 943

Query: 918  ETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEE 974
            E G+VLLEWH   GE+KPPVPLLKDAF SERRKAKMLNFSIAYGKT +GLARDWKVSV+E
Sbjct: 944  ENGRVLLEWHPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLARDWKVSVKE 1003

Query: 975  AKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAA 1034
            AK+TVD WY +R+EV  WQE RK E+R    VHTLLGRAR FP++K+ T S + HIERAA
Sbjct: 1004 AKETVDRWYRDRKEVSDWQEQRKFEAREFRRVHTLLGRARWFPSVKNATGSVKGHIERAA 1063

Query: 1035 INTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            INTPVQGSAADVAMCAMLEISKNARL+ELGWKLLLQV
Sbjct: 1064 INTPVQGSAADVAMCAMLEISKNARLEELGWKLLLQV 1100


>gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score = 1108 bits (2865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/802 (68%), Positives = 634/802 (79%), Gaps = 34/802 (4%)

Query: 296  KLVSFKRSNQKNPKN-------DAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVV 348
            K V  +R+  K  KN       D   GT     + E     ++  LR +L + Y  V +V
Sbjct: 307  KRVILERATNKMEKNAIQSMETDVVNGTKTRIVSDEGTGVSQVS-LRERLGAMYDKVHMV 365

Query: 349  DNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNG 408
            DN+SAAK+VV  LT++Y+HLVHACDTEVAKIDVKQ+TPVDHG++ICFSIYSGPEADFG+G
Sbjct: 366  DNLSAAKEVVRKLTSQYRHLVHACDTEVAKIDVKQQTPVDHGDIICFSIYSGPEADFGDG 425

Query: 409  KSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHM 468
            KSCIWVD+LDGGG++LL EFAPFF+DPSI+KVWHNYSFDNHV+ENYG KVSGFHADTMHM
Sbjct: 426  KSCIWVDVLDGGGKNLLVEFAPFFQDPSIRKVWHNYSFDNHVIENYGFKVSGFHADTMHM 485

Query: 469  ARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRK 528
            ARLWDSSRRT GGYSLEALTGD  VM + +  + + +  G   EG  GKISMK IFGR+K
Sbjct: 486  ARLWDSSRRTSGGYSLEALTGDSTVMRDARPVHAERLFHG---EGLFGKISMKTIFGRKK 542

Query: 529  LKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKP 588
            LKKDG+ GK++ I  VEELQ+ ERELWI YSA DSI+TL LY+SLK KL +  W  DG  
Sbjct: 543  LKKDGTEGKVTVIPSVEELQKTERELWICYSALDSISTLMLYESLKNKLSKRIWTFDG-- 600

Query: 589  VPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK 648
            V   SM++FY+ YW+PFGE+LV+METEG+LVDR YL+EIEKVA+AEQ+ A NRFR WA+K
Sbjct: 601  VRKGSMYEFYERYWRPFGELLVQMETEGVLVDRAYLAEIEKVAKAEQQVAANRFRNWAAK 660

Query: 649  HCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFR 708
            +CPDAKYMNVGSDTQLRQL FGG  N K+  ESLP E+ FKVPN +  I EGKK P+KFR
Sbjct: 661  YCPDAKYMNVGSDTQLRQLFFGGIQNRKNSDESLPYEKEFKVPNVDKGIEEGKKAPTKFR 720

Query: 709  NITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEY 768
             I L  I   + TEMYTA+GWPSV GDALK L+  +SA++D +D A D  +     ET  
Sbjct: 721  KIRLHRICDLIDTEMYTASGWPSVSGDALKALSGKVSADFDILDEADDDAEE--DPETRI 778

Query: 769  KGAVASNNKI----------------FATEQEAREACDAISALCEVCSIDSLISNFILPL 812
              A+A+NN++                F   Q+  EAC AI+ALCE+CSIDSLISNFILPL
Sbjct: 779  DEALATNNEVPSQEPEVSIYGSAYNAFGGGQKGIEACHAIAALCEMCSIDSLISNFILPL 838

Query: 813  QGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA 872
            QG +VSG+NGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAF+A  GNSLIVA
Sbjct: 839  QGQDVSGENGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFVAAQGNSLIVA 898

Query: 873  DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GE 929
            DYGQLELRILAHLAN KSMLDAFKAGGDFHSRTAMNMY HIR AVE G+VLLEWH   GE
Sbjct: 899  DYGQLELRILAHLANRKSMLDAFKAGGDFHSRTAMNMYTHIREAVENGEVLLEWHPQPGE 958

Query: 930  DKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV 989
            +KPPVPLLKDAF SERRKAKMLNFSIAYGKT +GLARDWKVSV+EAK+TVD WY++R+EV
Sbjct: 959  EKPPVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLARDWKVSVKEAKETVDRWYSDRKEV 1018

Query: 990  LTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMC 1049
              WQE RK E+R    VHTLLGRAR FP++K+ T S + HIERAAINTPVQGSAADVAMC
Sbjct: 1019 SDWQEQRKFEAREFRRVHTLLGRARWFPSVKNATGSVKGHIERAAINTPVQGSAADVAMC 1078

Query: 1050 AMLEISKNARLKELGWKLLLQV 1071
            AMLEISKNARL+ELGWKLLLQV
Sbjct: 1079 AMLEISKNARLEELGWKLLLQV 1100


>gi|22330154|ref|NP_175498.2| polymerase gamma 2 [Arabidopsis thaliana]
 gi|332194474|gb|AEE32595.1| polymerase gamma 2 [Arabidopsis thaliana]
          Length = 1050

 Score = 1086 bits (2808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/797 (66%), Positives = 623/797 (78%), Gaps = 34/797 (4%)

Query: 295  PKLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAA 354
            PK    +R    +  +  A G       S+ E S +   +R  L   Y  V++VDNV AA
Sbjct: 216  PKGEGIQRPLISDKSSGTANGNKNTVAISKVERSTEPSNVRENLGKIYDKVLIVDNVQAA 275

Query: 355  KKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV 414
            K  V  L N++++ VH+CDTEV+ I+VK+ETPVDHGE+ICFSIY GPEADFGNGKSCIWV
Sbjct: 276  KDTVAKLVNQFRNHVHSCDTEVSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWV 335

Query: 415  DLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
            D+L   GR++L EF P+FED  I+KVWHNYSFD+H++ N+G+++SGFHADTMHMARLWDS
Sbjct: 336  DVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLWDS 395

Query: 475  SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
            +RR +GGYSLEALT D KV+   +   + +         F+GKISMK IFG+RKLKKDGS
Sbjct: 396  ARRIKGGYSLEALTSDPKVLGGTQTKEEAE---------FLGKISMKTIFGKRKLKKDGS 446

Query: 535  AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
             GKI  I PVEELQRE+RE WISYSA D+I+TLKLY+S+ KKL  M W LDGKPV G++M
Sbjct: 447  EGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTM 506

Query: 595  FDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAK 654
             DFY E+W+PFGE+LVKME EG+LVDREYL+EIEKVA+AEQ+ A +RFR WASK+CPDAK
Sbjct: 507  LDFYHEFWRPFGELLVKMEAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAK 566

Query: 655  YMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRS 714
            YMN+GSDTQLRQL FGG  NS D  E LP+E++FKVPN + VI EGKKTP+KFRNI L  
Sbjct: 567  YMNIGSDTQLRQLFFGGISNSHD--EVLPVEKLFKVPNIDKVIEEGKKTPTKFRNIKLHR 624

Query: 715  IG-VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDL---------------- 757
            I    L TE +TA+GWPSVGGD LK LA  +SAEYD +D   D+                
Sbjct: 625  ISDSPLSTENFTASGWPSVGGDVLKELAGKVSAEYDFMDDVSDISLEEVVEDDDVETSET 684

Query: 758  DDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNV 817
              S   +ET+   A  +    F   +  +EAC AI++LCEVCSIDSLISNFILPLQGSNV
Sbjct: 685  QKSKTDDETD-TSAYGTAYVAFGGGERGKEACHAIASLCEVCSIDSLISNFILPLQGSNV 743

Query: 818  SGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQL 877
            SGK+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIR+AF+A PGN+L+VADYGQL
Sbjct: 744  SGKDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVADYGQL 803

Query: 878  ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPV 934
            ELRILAHL  CKSM++AFKAGGDFHSRTAMNMYPH+R AVE GQV+LEWH   GEDKPPV
Sbjct: 804  ELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGEDKPPV 863

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PLLKDAF SERRKAKMLNFSIAYGKT VGL+RDWKVS +EA++TVDLWYN+RQEV  WQE
Sbjct: 864  PLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQE 923

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             RKKE+  D +V TLLGR+RRFPA KS  R+QRNHI+RAAINTPVQGSAADVAMCAMLEI
Sbjct: 924  MRKKEAIEDGYVLTLLGRSRRFPASKS--RAQRNHIQRAAINTPVQGSAADVAMCAMLEI 981

Query: 1055 SKNARLKELGWKLLLQV 1071
            S N +LK+LGW+LLLQ+
Sbjct: 982  SINQQLKKLGWRLLLQI 998


>gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana]
 gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein [Arabidopsis thaliana]
 gi|71013470|dbj|BAE10873.1| PolI-like A DNA polymerase [Arabidopsis thaliana]
          Length = 1049

 Score = 1085 bits (2807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/797 (66%), Positives = 623/797 (78%), Gaps = 34/797 (4%)

Query: 295  PKLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAA 354
            PK    +R    +  +  A G       S+ E S +   +R  L   Y  V++VDNV AA
Sbjct: 215  PKGEGIQRPLISDKSSGTANGNKNTVAISKVERSTEPSNVRENLGKIYDKVLIVDNVQAA 274

Query: 355  KKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV 414
            K  V  L N++++ VH+CDTEV+ I+VK+ETPVDHGE+ICFSIY GPEADFGNGKSCIWV
Sbjct: 275  KDTVAKLVNQFRNHVHSCDTEVSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWV 334

Query: 415  DLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
            D+L   GR++L EF P+FED  I+KVWHNYSFD+H++ N+G+++SGFHADTMHMARLWDS
Sbjct: 335  DVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLWDS 394

Query: 475  SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
            +RR +GGYSLEALT D KV+   +   + +         F+GKISMK IFG+RKLKKDGS
Sbjct: 395  ARRIKGGYSLEALTSDPKVLGGTQTKEEAE---------FLGKISMKTIFGKRKLKKDGS 445

Query: 535  AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
             GKI  I PVEELQRE+RE WISYSA D+I+TLKLY+S+ KKL  M W LDGKPV G++M
Sbjct: 446  EGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTM 505

Query: 595  FDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAK 654
             DFY E+W+PFGE+LVKME EG+LVDREYL+EIEKVA+AEQ+ A +RFR WASK+CPDAK
Sbjct: 506  LDFYHEFWRPFGELLVKMEAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAK 565

Query: 655  YMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRS 714
            YMN+GSDTQLRQL FGG  NS D  E LP+E++FKVPN + VI EGKKTP+KFRNI L  
Sbjct: 566  YMNIGSDTQLRQLFFGGISNSHD--EVLPVEKLFKVPNIDKVIEEGKKTPTKFRNIKLHR 623

Query: 715  IG-VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDL---------------- 757
            I    L TE +TA+GWPSVGGD LK LA  +SAEYD +D   D+                
Sbjct: 624  ISDSPLSTENFTASGWPSVGGDVLKELAGKVSAEYDFMDDVSDISLEEVVEDDDVETSET 683

Query: 758  DDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNV 817
              S   +ET+   A  +    F   +  +EAC AI++LCEVCSIDSLISNFILPLQGSNV
Sbjct: 684  QKSKTDDETD-TSAYGTAYVAFGGGERGKEACHAIASLCEVCSIDSLISNFILPLQGSNV 742

Query: 818  SGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQL 877
            SGK+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIR+AF+A PGN+L+VADYGQL
Sbjct: 743  SGKDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVADYGQL 802

Query: 878  ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPV 934
            ELRILAHL  CKSM++AFKAGGDFHSRTAMNMYPH+R AVE GQV+LEWH   GEDKPPV
Sbjct: 803  ELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGEDKPPV 862

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PLLKDAF SERRKAKMLNFSIAYGKT VGL+RDWKVS +EA++TVDLWYN+RQEV  WQE
Sbjct: 863  PLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQE 922

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             RKKE+  D +V TLLGR+RRFPA KS  R+QRNHI+RAAINTPVQGSAADVAMCAMLEI
Sbjct: 923  MRKKEAIEDGYVLTLLGRSRRFPASKS--RAQRNHIQRAAINTPVQGSAADVAMCAMLEI 980

Query: 1055 SKNARLKELGWKLLLQV 1071
            S N +LK+LGW+LLLQ+
Sbjct: 981  SINQQLKKLGWRLLLQI 997


>gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family protein, putative [Arabidopsis thaliana]
          Length = 1067

 Score = 1083 bits (2802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/796 (66%), Positives = 622/796 (78%), Gaps = 33/796 (4%)

Query: 295  PKLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAA 354
            PK    +R    +  +  A G       S+ E S +   +R  L   Y  V++VDNV AA
Sbjct: 214  PKGEGIQRPLISDKSSGTANGNKNTVAISKVERSTEPSNVRENLGKIYDKVLIVDNVQAA 273

Query: 355  KKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV 414
            K  V  L N++++ VH+CDTEV+ I+VK+ETPVDHGE+ICFSIY GPEADFGNGKSCIWV
Sbjct: 274  KDTVAKLVNQFRNHVHSCDTEVSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWV 333

Query: 415  DLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
            D+L   GR++L EF P+FED  I+KVWHNYSFD+H++ N+G+++SGFHADTMHMARLWDS
Sbjct: 334  DVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLWDS 393

Query: 475  SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
            +RR +GGYSLEALT D KV+   +   + +         F+GKISMK IFG+RKLKKDGS
Sbjct: 394  ARRIKGGYSLEALTSDPKVLGGTQTKEEAE---------FLGKISMKTIFGKRKLKKDGS 444

Query: 535  AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
             GKI  I PVEELQRE+RE WISYSA D+I+TLKLY+S+ KKL  M W LDGKPV G++M
Sbjct: 445  EGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTM 504

Query: 595  FDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAK 654
             DFY E+W+PFGE+LVKME EG+LVDREYL+EIEKVA+AEQ+ A +RFR WASK+CPDAK
Sbjct: 505  LDFYHEFWRPFGELLVKMEAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAK 564

Query: 655  YMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRS 714
            YMN+GSDTQLRQL FGG  NS  D E LP+E++FKVPN + VI EGKKTP+KFRNI L  
Sbjct: 565  YMNIGSDTQLRQLFFGGISNSSHD-EVLPVEKLFKVPNIDKVIEEGKKTPTKFRNIKLHR 623

Query: 715  IG-VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDL---------------- 757
            I    L TE +TA+GWPSVGGD LK LA  +SAEYD +D   D+                
Sbjct: 624  ISDSPLSTENFTASGWPSVGGDVLKELAGKVSAEYDFMDDVSDISLEEVVEDDDVETSET 683

Query: 758  DDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNV 817
              S   +ET+   A  +    F   +  +EAC AI++LCEVCSIDSLISNFILPLQGSNV
Sbjct: 684  QKSKTDDETD-TSAYGTAYVAFGGGERGKEACHAIASLCEVCSIDSLISNFILPLQGSNV 742

Query: 818  SGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQL 877
            SGK+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIR+AF+A PGN+L+VADYGQL
Sbjct: 743  SGKDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVADYGQL 802

Query: 878  ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPV 934
            ELRILAHL  CKSM++AFKAGGDFHSRTAMNMYPH+R AVE GQV+LEWH   GEDKPPV
Sbjct: 803  ELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGEDKPPV 862

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PLLKDAF SERRKAKMLNFSIAYGKT VGL+RDWKVS +EA++TVDLWYN+RQEV  WQE
Sbjct: 863  PLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQE 922

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             RKKE+  D +V TLLGR+RRFPA KS  R+QRNHI+RAAINTPVQGSAADVAMCAMLEI
Sbjct: 923  MRKKEAIEDGYVLTLLGRSRRFPASKS--RAQRNHIQRAAINTPVQGSAADVAMCAMLEI 980

Query: 1055 SKNARLKELGWKLLLQ 1070
            S N +LK+LGW+LLLQ
Sbjct: 981  SINQQLKKLGWRLLLQ 996


>gi|297830744|ref|XP_002883254.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
 gi|297329094|gb|EFH59513.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1044

 Score = 1082 bits (2799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/773 (68%), Positives = 616/773 (79%), Gaps = 36/773 (4%)

Query: 323  SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
            S  E    L  +R+ L   Y+ V+VVDNVS+AK+ V ML N+Y++LVHACDTEV++IDVK
Sbjct: 232  SNVEKCTNLSKVRANLKKIYNRVLVVDNVSSAKETVAMLMNQYRNLVHACDTEVSRIDVK 291

Query: 383  QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWH 442
             ETPVDHGE+ICFSIY G EADFG+GKSCIWVD+L   GRD+L EF PFFED SIKKVWH
Sbjct: 292  TETPVDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWH 351

Query: 443  NYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502
            NYSFDNH++ NYG+K+SGFH DTMHMARLWDSSRR  GGYSLEALT D +V+   +   +
Sbjct: 352  NYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEALTSDPRVLGGTETKEE 411

Query: 503  KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
             ++          GKISMK IFG+ KLKKDGS GK+  I PV+ELQ E+RE WISYSA D
Sbjct: 412  AEL---------FGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWISYSALD 462

Query: 563  SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
            SI+TLKLY+S+KK+L    W LDG  +  ++MFDFYQEYWQPFGE+L KME+EGMLVDR+
Sbjct: 463  SISTLKLYESMKKQLQAKKWFLDGNLISKQNMFDFYQEYWQPFGELLAKMESEGMLVDRD 522

Query: 623  YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESL 682
            YL++IE VA+AEQE AV+RFR WASKHCPDAK+MNVGSDTQLRQL FGG  NS +D E L
Sbjct: 523  YLAQIEIVAKAEQEIAVSRFRSWASKHCPDAKHMNVGSDTQLRQLFFGGISNSCND-EDL 581

Query: 683  PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG-VDLPTEMYTATGWPSVGGDALKTLA 741
            P E++FKVPN + VI +GKK  +KFRNI L  I    LPTE +TA+GWPS+ GD LK LA
Sbjct: 582  PYEKLFKVPNVDKVIEKGKKRATKFRNIKLHRISDRPLPTEKFTASGWPSISGDTLKALA 641

Query: 742  RNISAEYDCVDGAHD------LDDSGCTE------ETEYKGA-VASNNKIFATEQEA--- 785
              +SAEYD  +G  D      + D  C        ET++    V S+   + T  +A   
Sbjct: 642  GKVSAEYDYTEGVSDTCLEENIGDDDCISLPDEVLETQHSNTTVESDTSAYGTAFDAFGG 701

Query: 786  ----REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARR 841
                +EAC AI+ALCEVCSIDSLISNFILPLQGSNVSGK+GRVHCSLNINTETGRLSARR
Sbjct: 702  GESGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARR 761

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLA+CKSM +AF AGGDF
Sbjct: 762  PNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCKSMKEAFIAGGDF 821

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
            HSRTAMNMYPHIR AVE G+VLLEWH   G++KPPVPLLKDAFASERRKAKMLNFSIAYG
Sbjct: 822  HSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFASERRKAKMLNFSIAYG 881

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
            KT +GL+RDWKVS+EEA+ TV+LWYN+RQEV  WQE RKKE+  + +V TLLGRAR+FP 
Sbjct: 882  KTAIGLSRDWKVSIEEAQDTVNLWYNDRQEVRKWQELRKKEAIQNGYVLTLLGRARKFPV 941

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             +S  R+Q+NHIERAAINTPVQGSAADVAMCAMLEISKN RLKELGWKLLLQ+
Sbjct: 942  YRS--RAQKNHIERAAINTPVQGSAADVAMCAMLEISKNQRLKELGWKLLLQI 992


>gi|11994141|dbj|BAB01162.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1088

 Score = 1082 bits (2797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/773 (69%), Positives = 613/773 (79%), Gaps = 36/773 (4%)

Query: 323  SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
            S+ E    L  +R+ L   Y+ V VVDNVS+AK+ V +L N+Y++LVHACDTEV++IDVK
Sbjct: 187  SKVEKCTNLSQVRANLKKIYNRVRVVDNVSSAKETVALLMNQYRNLVHACDTEVSRIDVK 246

Query: 383  QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWH 442
             ETPVDHGE+ICFSIY G EADFG+GKSCIWVD+L   GRD+L EF PFFED SIKKVWH
Sbjct: 247  TETPVDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWH 306

Query: 443  NYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502
            NYSFDNH++ NYG+K+SGFH DTMHMARLWDSSRR  GGYSLEALT D KV+   +   +
Sbjct: 307  NYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEALTSDPKVLGGTETKEE 366

Query: 503  KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
             ++          GKISMK IFG+ KLKKDGS GK+  I PV+ELQ E+RE WISYSA D
Sbjct: 367  AEL---------FGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWISYSALD 417

Query: 563  SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
            SI+TLKLY+S+KK+L    W LDGK +  K+MFDFYQEYWQPFGE+L KME+EGMLVDR+
Sbjct: 418  SISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKMESEGMLVDRD 477

Query: 623  YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESL 682
            YL++IE VA+AEQE AV+RFR WASKHCPDAK+MNVGSDTQLRQL FGG  NS +D E L
Sbjct: 478  YLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGISNSCND-EDL 536

Query: 683  PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG-VDLPTEMYTATGWPSVGGDALKTLA 741
            P E++FKVPN + VI EGKK  +KFRNI L  I    LPTE +TA+GWPSV GD LK LA
Sbjct: 537  PYEKLFKVPNVDKVIEEGKKRATKFRNIKLHRISDRPLPTEKFTASGWPSVSGDTLKALA 596

Query: 742  RNISAEYDCVDGAHD------LDDSGC-------TEETEYKGAVASNNKIFATEQEA--- 785
              +SAEYD ++G  D      + D  C        E      +V S+   + T  +A   
Sbjct: 597  GKVSAEYDYMEGVLDTCLEENIGDDDCISLPDEVVETQHVNTSVESDTSAYGTAFDAFGG 656

Query: 786  ----REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARR 841
                +EAC AI+ALCEVCSIDSLISNFILPLQGSNVSGK+GRVHCSLNINTETGRLSARR
Sbjct: 657  GESGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARR 716

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLA+C+SM +AF AGGDF
Sbjct: 717  PNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDF 776

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
            HSRTAMNMYPHIR AVE G+VLLEWH   G++KPPVPLLKDAFASERRKAKMLNFSIAYG
Sbjct: 777  HSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFASERRKAKMLNFSIAYG 836

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
            KT +GL+RDWKVS EEA+ TV+LWYN+RQEV  WQE RKKE+    +V TLLGRAR+FP 
Sbjct: 837  KTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLTLLGRARKFPE 896

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             +S  R+Q+NHIERAAINTPVQGSAADVAMCAMLEIS N RLKELGWKLLLQV
Sbjct: 897  YRS--RAQKNHIERAAINTPVQGSAADVAMCAMLEISNNQRLKELGWKLLLQV 947


>gi|334185498|ref|NP_001189942.1| polymerase gamma 1 [Arabidopsis thaliana]
 gi|332642872|gb|AEE76393.1| polymerase gamma 1 [Arabidopsis thaliana]
          Length = 1049

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/773 (69%), Positives = 613/773 (79%), Gaps = 36/773 (4%)

Query: 323  SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
            S+ E    L  +R+ L   Y+ V VVDNVS+AK+ V +L N+Y++LVHACDTEV++IDVK
Sbjct: 237  SKVEKCTNLSQVRANLKKIYNRVRVVDNVSSAKETVALLMNQYRNLVHACDTEVSRIDVK 296

Query: 383  QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWH 442
             ETPVDHGE+ICFSIY G EADFG+GKSCIWVD+L   GRD+L EF PFFED SIKKVWH
Sbjct: 297  TETPVDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWH 356

Query: 443  NYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502
            NYSFDNH++ NYG+K+SGFH DTMHMARLWDSSRR  GGYSLEALT D KV+   +   +
Sbjct: 357  NYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEALTSDPKVLGGTETKEE 416

Query: 503  KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
             ++          GKISMK IFG+ KLKKDGS GK+  I PV+ELQ E+RE WISYSA D
Sbjct: 417  AEL---------FGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWISYSALD 467

Query: 563  SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
            SI+TLKLY+S+KK+L    W LDGK +  K+MFDFYQEYWQPFGE+L KME+EGMLVDR+
Sbjct: 468  SISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKMESEGMLVDRD 527

Query: 623  YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESL 682
            YL++IE VA+AEQE AV+RFR WASKHCPDAK+MNVGSDTQLRQL FGG  NS +D E L
Sbjct: 528  YLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGISNSCND-EDL 586

Query: 683  PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG-VDLPTEMYTATGWPSVGGDALKTLA 741
            P E++FKVPN + VI EGKK  +KFRNI L  I    LPTE +TA+GWPSV GD LK LA
Sbjct: 587  PYEKLFKVPNVDKVIEEGKKRATKFRNIKLHRISDRPLPTEKFTASGWPSVSGDTLKALA 646

Query: 742  RNISAEYDCVDGAHD------LDDSGC-------TEETEYKGAVASNNKIFATEQEA--- 785
              +SAEYD ++G  D      + D  C        E      +V S+   + T  +A   
Sbjct: 647  GKVSAEYDYMEGVLDTCLEENIGDDDCISLPDEVVETQHVNTSVESDTSAYGTAFDAFGG 706

Query: 786  ----REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARR 841
                +EAC AI+ALCEVCSIDSLISNFILPLQGSNVSGK+GRVHCSLNINTETGRLSARR
Sbjct: 707  GESGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARR 766

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLA+C+SM +AF AGGDF
Sbjct: 767  PNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDF 826

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
            HSRTAMNMYPHIR AVE G+VLLEWH   G++KPPVPLLKDAFASERRKAKMLNFSIAYG
Sbjct: 827  HSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFASERRKAKMLNFSIAYG 886

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
            KT +GL+RDWKVS EEA+ TV+LWYN+RQEV  WQE RKKE+    +V TLLGRAR+FP 
Sbjct: 887  KTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLTLLGRARKFPE 946

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             +S  R+Q+NHIERAAINTPVQGSAADVAMCAMLEIS N RLKELGWKLLLQV
Sbjct: 947  YRS--RAQKNHIERAAINTPVQGSAADVAMCAMLEISNNQRLKELGWKLLLQV 997


>gi|42565057|ref|NP_188690.3| polymerase gamma 1 [Arabidopsis thaliana]
 gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis thaliana]
 gi|71013474|dbj|BAE10874.1| PolI-like B DNA polymerase [Arabidopsis thaliana]
 gi|110741933|dbj|BAE98907.1| putative DNA polymerase [Arabidopsis thaliana]
 gi|332642871|gb|AEE76392.1| polymerase gamma 1 [Arabidopsis thaliana]
          Length = 1034

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/773 (69%), Positives = 613/773 (79%), Gaps = 36/773 (4%)

Query: 323  SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
            S+ E    L  +R+ L   Y+ V VVDNVS+AK+ V +L N+Y++LVHACDTEV++IDVK
Sbjct: 222  SKVEKCTNLSQVRANLKKIYNRVRVVDNVSSAKETVALLMNQYRNLVHACDTEVSRIDVK 281

Query: 383  QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWH 442
             ETPVDHGE+ICFSIY G EADFG+GKSCIWVD+L   GRD+L EF PFFED SIKKVWH
Sbjct: 282  TETPVDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWH 341

Query: 443  NYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502
            NYSFDNH++ NYG+K+SGFH DTMHMARLWDSSRR  GGYSLEALT D KV+   +   +
Sbjct: 342  NYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEALTSDPKVLGGTETKEE 401

Query: 503  KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
             ++          GKISMK IFG+ KLKKDGS GK+  I PV+ELQ E+RE WISYSA D
Sbjct: 402  AEL---------FGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWISYSALD 452

Query: 563  SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
            SI+TLKLY+S+KK+L    W LDGK +  K+MFDFYQEYWQPFGE+L KME+EGMLVDR+
Sbjct: 453  SISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKMESEGMLVDRD 512

Query: 623  YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESL 682
            YL++IE VA+AEQE AV+RFR WASKHCPDAK+MNVGSDTQLRQL FGG  NS +D E L
Sbjct: 513  YLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGISNSCND-EDL 571

Query: 683  PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG-VDLPTEMYTATGWPSVGGDALKTLA 741
            P E++FKVPN + VI EGKK  +KFRNI L  I    LPTE +TA+GWPSV GD LK LA
Sbjct: 572  PYEKLFKVPNVDKVIEEGKKRATKFRNIKLHRISDRPLPTEKFTASGWPSVSGDTLKALA 631

Query: 742  RNISAEYDCVDGAHD------LDDSGC-------TEETEYKGAVASNNKIFATEQEA--- 785
              +SAEYD ++G  D      + D  C        E      +V S+   + T  +A   
Sbjct: 632  GKVSAEYDYMEGVLDTCLEENIGDDDCISLPDEVVETQHVNTSVESDTSAYGTAFDAFGG 691

Query: 786  ----REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARR 841
                +EAC AI+ALCEVCSIDSLISNFILPLQGSNVSGK+GRVHCSLNINTETGRLSARR
Sbjct: 692  GESGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARR 751

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQNQPALEKDRYKIRQAFIA PGNSLIVADYGQLELRILAHLA+C+SM +AF AGGDF
Sbjct: 752  PNLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDF 811

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
            HSRTAMNMYPHIR AVE G+VLLEWH   G++KPPVPLLKDAFASERRKAKMLNFSIAYG
Sbjct: 812  HSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFASERRKAKMLNFSIAYG 871

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
            KT +GL+RDWKVS EEA+ TV+LWYN+RQEV  WQE RKKE+    +V TLLGRAR+FP 
Sbjct: 872  KTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLTLLGRARKFPE 931

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             +S  R+Q+NHIERAAINTPVQGSAADVAMCAMLEIS N RLKELGWKLLLQV
Sbjct: 932  YRS--RAQKNHIERAAINTPVQGSAADVAMCAMLEISNNQRLKELGWKLLLQV 982


>gi|357459413|ref|XP_003599987.1| DNA polymerase [Medicago truncatula]
 gi|355489035|gb|AES70238.1| DNA polymerase [Medicago truncatula]
          Length = 1112

 Score = 1072 bits (2771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/760 (69%), Positives = 613/760 (80%), Gaps = 37/760 (4%)

Query: 334  LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
            LR +L S Y +++VV+N+S A++V  MLT  Y+HL+HACDTEV+KIDVKQETP+DHGE+I
Sbjct: 316  LRERLCSIYEDILVVNNISHAEQVAKMLTVNYRHLIHACDTEVSKIDVKQETPIDHGEII 375

Query: 394  CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
            CFSIYSGPEADFG GKSCIWVD+LDGGG+++LN+FA FF+DPSIKKVWHNYSFD HV++N
Sbjct: 376  CFSIYSGPEADFGGGKSCIWVDVLDGGGKEILNKFADFFQDPSIKKVWHNYSFDCHVIQN 435

Query: 454  YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
            YG  VSGFHADTMHMARLWDSSRR  GGYSLEAL+GD++VMS     ++ D+        
Sbjct: 436  YGFNVSGFHADTMHMARLWDSSRRLVGGYSLEALSGDKEVMSRGNLNHETDL-------- 487

Query: 514  FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
             +GK+SM  +FG+RK KKDGS GKI TI PVE LQREER  WI YSA D+ +TLKLY+SL
Sbjct: 488  -IGKVSMTTLFGQRKEKKDGSMGKIVTIEPVEVLQREERIPWICYSALDARSTLKLYESL 546

Query: 574  KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
            K  L ++ WKLDG+ +  ++MFDFY+ Y QPFGE+LVKME EGMLVDR YL EIEKVA+A
Sbjct: 547  KSHLSDLPWKLDGELLR-ENMFDFYEIYLQPFGELLVKMECEGMLVDRLYLQEIEKVAKA 605

Query: 634  EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNS-----------KDDSESL 682
            EQ+AA+NRFRKWAS++CPDAKYMNVGSDTQLR LLFGG  N            K+ +E++
Sbjct: 606  EQQAALNRFRKWASRYCPDAKYMNVGSDTQLRVLLFGGTVNRCTLFKSFVELLKNHNEAI 665

Query: 683  PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLAR 742
            P ERIFKVPN + VI +GKK PSK R+I L SIG +L  ++YT +GWPS  G ALK LA 
Sbjct: 666  PTERIFKVPNVDKVIEKGKKIPSKLRDIKLNSIGCNLNVDIYTPSGWPSCSGPALKALAG 725

Query: 743  NISAEYDCVDGAHDL-DDSGCTEETEYKGAVASNNKI------FATEQEAREACDAISAL 795
             +SAEYD      DL D+ G   + E +     N+        F TE+E REAC AI+AL
Sbjct: 726  KVSAEYD-----FDLEDEDGNPSQREDEPLEIDNSAYGTAYFAFPTEEEGREACHAIAAL 780

Query: 796  CEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRY 855
            CE+CSIDSLISNFILPLQG N+SGK+ RVHCS+NINTETGRLSARRPNLQNQPALEKDRY
Sbjct: 781  CEICSIDSLISNFILPLQGHNISGKDQRVHCSININTETGRLSARRPNLQNQPALEKDRY 840

Query: 856  KIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRN 915
            KIRQAF+A PGNSLIVADYGQLELRILAHL +CKSML+AF+AGGDFHSRTAMNMYP+IR 
Sbjct: 841  KIRQAFVAAPGNSLIVADYGQLELRILAHLTDCKSMLEAFEAGGDFHSRTAMNMYPYIRE 900

Query: 916  AVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSV 972
            AVE  +VLLEWH   GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP GL++DWKVSV
Sbjct: 901  AVEKKEVLLEWHPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPQGLSKDWKVSV 960

Query: 973  EEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS-QRNHIE 1031
            +EAK TVDLWYN+R+EVL WQ+ RKKE+     V+TLLGRARRFP I    R+  + HIE
Sbjct: 961  KEAKNTVDLWYNDRKEVLKWQQKRKKEAFEFGCVYTLLGRARRFPEIFLGRRNFYKGHIE 1020

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            RAAINTPVQGSAADVAM AMLEISKN +LKELGWKLLLQV
Sbjct: 1021 RAAINTPVQGSAADVAMLAMLEISKNKQLKELGWKLLLQV 1060


>gi|357459417|ref|XP_003599989.1| DNA polymerase [Medicago truncatula]
 gi|355489037|gb|AES70240.1| DNA polymerase [Medicago truncatula]
          Length = 1098

 Score = 1071 bits (2769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/760 (69%), Positives = 613/760 (80%), Gaps = 37/760 (4%)

Query: 334  LRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVI 393
            LR +L S Y +++VV+N+S A++V  MLT  Y+HL+HACDTEV+KIDVKQETP+DHGE+I
Sbjct: 302  LRERLCSIYEDILVVNNISHAEQVAKMLTVNYRHLIHACDTEVSKIDVKQETPIDHGEII 361

Query: 394  CFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN 453
            CFSIYSGPEADFG GKSCIWVD+LDGGG+++LN+FA FF+DPSIKKVWHNYSFD HV++N
Sbjct: 362  CFSIYSGPEADFGGGKSCIWVDVLDGGGKEILNKFADFFQDPSIKKVWHNYSFDCHVIQN 421

Query: 454  YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEG 513
            YG KVSGFHADTMHMARLWDSSRR  GGYSLEAL+GD++VMS     ++ D+        
Sbjct: 422  YGFKVSGFHADTMHMARLWDSSRRLVGGYSLEALSGDKEVMSRGNLNHETDL-------- 473

Query: 514  FMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
             +GK+SM  IFG+RK KKDGS GKI TI PVE LQREE   WI YSA D+ +TLKLY+SL
Sbjct: 474  -IGKVSMTTIFGQRKEKKDGSMGKIVTIEPVEVLQREEHIPWICYSALDARSTLKLYESL 532

Query: 574  KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARA 633
            K  L ++ WK+DG+ +  ++MFDFY+ Y QPFGE+LVKME EGMLVDR YL EIEKVA+A
Sbjct: 533  KSHLSDLPWKIDGELLR-ENMFDFYEIYLQPFGELLVKMECEGMLVDRLYLQEIEKVAKA 591

Query: 634  EQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNS-----------KDDSESL 682
            EQ+AA+NRFRKWAS++CPDAKYMNVGSDTQLR LLFGG  N            ++ +E++
Sbjct: 592  EQQAALNRFRKWASRYCPDAKYMNVGSDTQLRVLLFGGTVNRCTLFKSFVELLENHNEAI 651

Query: 683  PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLAR 742
            P ERIFKVPN + VI +GKK PSK R+I L SIG +L  ++YT +GWPS  G ALK LA 
Sbjct: 652  PTERIFKVPNVDKVIEKGKKIPSKLRDIKLNSIGCNLNVDIYTPSGWPSCSGPALKALAG 711

Query: 743  NISAEYDCVDGAHDL-DDSGCTEETEYKGAVASNNKI------FATEQEAREACDAISAL 795
             +SAEYD      DL D+ G   + E +     N+        F TE+E REAC AI+AL
Sbjct: 712  KVSAEYD-----FDLEDEDGNPSQREDEPLEIDNSAYGTAYFAFPTEEEGREACHAIAAL 766

Query: 796  CEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRY 855
            CE+CSIDSLISNFILPLQG N+SGK+ RVHCS+NINTETGRLSARRPNLQNQPALEKDRY
Sbjct: 767  CEICSIDSLISNFILPLQGHNISGKDQRVHCSININTETGRLSARRPNLQNQPALEKDRY 826

Query: 856  KIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRN 915
            KIRQAF+A PGNSLIVADYGQLELRILAHL +CKSML+AF+AGGDFHSRTAMNMYP+IR 
Sbjct: 827  KIRQAFVAAPGNSLIVADYGQLELRILAHLTDCKSMLEAFEAGGDFHSRTAMNMYPYIRE 886

Query: 916  AVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSV 972
            AVE  +VLLEWH   GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP GL++DWKVSV
Sbjct: 887  AVEKKEVLLEWHPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPQGLSKDWKVSV 946

Query: 973  EEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS-QRNHIE 1031
            +EAK TVDLWYN+R+EVL WQ+ RKKE+     V+TLLGRARRFP I    R+  + HIE
Sbjct: 947  KEAKNTVDLWYNDRKEVLKWQQKRKKEAFEFGCVYTLLGRARRFPEIFLGRRNYYKGHIE 1006

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            RAAINTPVQGSAADVAM AMLEISKN +LKELGWKLLLQV
Sbjct: 1007 RAAINTPVQGSAADVAMLAMLEISKNKQLKELGWKLLLQV 1046


>gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1047

 Score = 1066 bits (2757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/769 (67%), Positives = 612/769 (79%), Gaps = 32/769 (4%)

Query: 323  SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
            S+ E S +   +R  L   Y  V+VVDNV AAK  V  L N+Y++ VH+CDTEV+ I+VK
Sbjct: 239  SKVEKSTEPSNVRENLRKIYDKVLVVDNVQAAKDTVAKLVNQYRNHVHSCDTEVSGIEVK 298

Query: 383  QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWH 442
            +ETPVDHGE+ICFSIY GPEADFG GKSCIWVD+L   GR++L EF P+FED  I+KVWH
Sbjct: 299  EETPVDHGELICFSIYCGPEADFGYGKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWH 358

Query: 443  NYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502
            NYSFD+H++ N+G+++SGFHADTMHMARLWDS+RR EGGYSLEALT D KV+   +   +
Sbjct: 359  NYSFDSHIIRNHGIEISGFHADTMHMARLWDSARRIEGGYSLEALTSDPKVLGGTQTKEE 418

Query: 503  KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFD 562
             D         F+GKISMK IFG+RKLKKDGS GK+  I PVEELQRE+RE WISYSA D
Sbjct: 419  AD---------FLGKISMKTIFGKRKLKKDGSEGKMVVIPPVEELQREDREAWISYSALD 469

Query: 563  SINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDRE 622
            +I+TLKLY+S+ KKL  M W+LDGKPV  ++M DFY E+W+PFGE+LVKME EG+LVDRE
Sbjct: 470  AISTLKLYESMTKKLQMMDWRLDGKPVLERTMLDFYHEFWRPFGELLVKMEAEGILVDRE 529

Query: 623  YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESL 682
            YL+EIEKVA+AEQ+ A +RFR WASK+CPDAKYMN+GSDTQLRQL FGG  NS +  E L
Sbjct: 530  YLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGISNSVN-GEVL 588

Query: 683  PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG-VDLPTEMYTATGWPSVGGDALKTLA 741
            P+E++FK+PN + VI  GKKT +KFRNI L  I    L TE  TA+GWPS+ GD LK LA
Sbjct: 589  PVEKLFKIPNIDKVIEVGKKTATKFRNIKLHRISDSPLSTENLTASGWPSISGDVLKELA 648

Query: 742  RNISAEYDCVDGAHDL--------DDSGCTEETE-YKGAVASNNKI-------FATEQEA 785
              +SAEYD ++   D+        +D+  T +T+  K  V ++          F   +  
Sbjct: 649  GKVSAEYDFMEDVSDISLEEVAEDNDADQTSKTQKSKTDVQTDTSAYGIAYVAFGGGERG 708

Query: 786  REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQ 845
            +EAC AI++LCEVCSID+LISNFILPLQGSNVSGK+GRVHCSLNINTETGRLSARRPNLQ
Sbjct: 709  KEACHAIASLCEVCSIDALISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARRPNLQ 768

Query: 846  NQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
            NQPALEKDRYKIR+AF+A PGN+L+VADYGQLELRILAHL  CKSM++AFKAGGDFHSRT
Sbjct: 769  NQPALEKDRYKIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRT 828

Query: 906  AMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPV 962
            AMNMYPHIR AVE GQV+LEWH   GEDKPPVPLLKDAF SERRKAKMLNFSIAYGKT +
Sbjct: 829  AMNMYPHIREAVENGQVILEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAI 888

Query: 963  GLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSL 1022
            GL+RDWKVSVEEA+ TV LWYN+RQEV  WQE RKKE+  D +V TLLGR+RRFP  KS 
Sbjct: 889  GLSRDWKVSVEEAQDTVKLWYNDRQEVRKWQERRKKEAIEDGYVRTLLGRSRRFPRYKS- 947

Query: 1023 TRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             R+Q+NHI+RAAINTPVQGSAADVAMCAMLEIS N +LK+LGW+LLLQ+
Sbjct: 948  -RAQKNHIQRAAINTPVQGSAADVAMCAMLEISTNQQLKKLGWRLLLQI 995


>gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group]
          Length = 1032

 Score = 1028 bits (2657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/747 (67%), Positives = 597/747 (79%), Gaps = 25/747 (3%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R  LA+ Y  V+VVDNV +A+ VV +LT+KYK+ +HACDTEVA IDVKQETPV HGEVIC
Sbjct: 249  RKALATVYDKVLVVDNVKSARSVVQLLTSKYKNFIHACDTEVANIDVKQETPVSHGEVIC 308

Query: 395  FSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
            FSIYSG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSI+KVWHNYSFD+HV+
Sbjct: 309  FSIYSGNSDAEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIRKVWHNYSFDSHVI 367

Query: 452  ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
            ENYG+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D +VM    K  QK        
Sbjct: 368  ENYGIKVAGFHADTMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQK-------- 419

Query: 512  EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
               +GK SMK IFG +K+KKDGSAGKI ++ PVE LQR++RE+WI YS+ DS++TL+LY+
Sbjct: 420  ---IGKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYE 476

Query: 572  SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVA 631
            SLK KL +  W  DG   P  SM+DFY+EYW+PFG +LVKMET GMLVDR YLSEIEKVA
Sbjct: 477  SLKSKLEKKHWTFDG--CPRGSMYDFYEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVA 534

Query: 632  RAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP 691
             A+++ A ++FRKWASK+CPDAKYMNV SDTQ+RQL FGG  N     E+LP  R  KVP
Sbjct: 535  VAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIENRCKPGETLPKSRTIKVP 594

Query: 692  NTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCV 751
            N   +IAEGKKTP K+R I L SI  DL T+++TA+GWPSV GDAL++LA  +  +    
Sbjct: 595  NDGSLIAEGKKTP-KYRTIELFSIVEDLKTDLFTASGWPSVSGDALRSLAGKLPTDLVYT 653

Query: 752  DGAHDLDDSGCTEETEY----KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISN 807
                + DDSG +E +E+      +  +  + F   ++ +EAC AI+ALCE+CSIDSLISN
Sbjct: 654  TDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHAIAALCEICSIDSLISN 713

Query: 808  FILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN 867
            FILPLQG+++S   GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQAF+A PGN
Sbjct: 714  FILPLQGNHISCDEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGN 773

Query: 868  SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
            SLIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHSRTAMNMY HIR+AVE  +VLLEWH
Sbjct: 774  SLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWH 833

Query: 928  ---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYN 984
               G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKTPVGLARDWKVSV+EAK T+ LWY 
Sbjct: 834  PQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYR 893

Query: 985  ERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAA 1044
            +R+EVL WQ  +K+ ++    V+TLLGR+RRFP +   T  QR HIERAAIN PVQGSAA
Sbjct: 894  DRKEVLAWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAA 953

Query: 1045 DVAMCAMLEISKNARLKELGWKLLLQV 1071
            DVAMCAMLEI +NARLKELGW+LLLQV
Sbjct: 954  DVAMCAMLEIDRNARLKELGWRLLLQV 980


>gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group]
          Length = 885

 Score = 1025 bits (2650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/747 (67%), Positives = 596/747 (79%), Gaps = 25/747 (3%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R  LA+ Y  V+VVDNV +A+ VV +LT+KYK+ +HACDTEVA IDVKQETPV HGEVIC
Sbjct: 102  RKALATVYDKVLVVDNVKSARSVVQLLTSKYKNFIHACDTEVANIDVKQETPVSHGEVIC 161

Query: 395  FSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
            FSIYSG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSI+KVWHNYSFD+HV+
Sbjct: 162  FSIYSGNSDAEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIRKVWHNYSFDSHVI 220

Query: 452  ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
            ENYG+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D +VM    K  QK        
Sbjct: 221  ENYGIKVAGFHADTMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQK-------- 272

Query: 512  EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
               +GK SMK IFG +K+KKDGSAGKI ++ PVE LQR++RE+WI YS+ DS++TL+LY+
Sbjct: 273  ---IGKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYE 329

Query: 572  SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVA 631
            SLK KL +  W  DG   P  SM+DFY+EYW+PFG +LVKMET GMLVDR YLSEIEKVA
Sbjct: 330  SLKSKLEKKHWTFDG--CPRGSMYDFYEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVA 387

Query: 632  RAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP 691
             A+++ A ++FRKWASK+CPDAKYMNV SDTQ+RQL FGG  N     E+LP  R  KVP
Sbjct: 388  VAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIENRCKPGETLPKSRTIKVP 447

Query: 692  NTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCV 751
            N   +IAEGKKTP K+  I L SI  DL T+++TA+GWPSV GDAL++LA  +  +    
Sbjct: 448  NDGSLIAEGKKTP-KYCTIELFSIVEDLKTDLFTASGWPSVSGDALRSLAGKLPTDLVYT 506

Query: 752  DGAHDLDDSGCTEETEY----KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISN 807
                + DDSG +E +E+      +  +  + F   ++ +EAC AI+ALCE+CSIDSLISN
Sbjct: 507  TDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHAIAALCEICSIDSLISN 566

Query: 808  FILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN 867
            FILPLQG+++S   GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQAF+A PGN
Sbjct: 567  FILPLQGNHISCDEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGN 626

Query: 868  SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
            SLIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHSRTAMNMY HIR+AVE  +VLLEWH
Sbjct: 627  SLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWH 686

Query: 928  ---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYN 984
               G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKTPVGLARDWKVSV+EAK T+ LWY 
Sbjct: 687  PQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYR 746

Query: 985  ERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAA 1044
            +R+EVL WQ  +K+ ++    V+TLLGR+RRFP +   T  QR HIERAAIN PVQGSAA
Sbjct: 747  DRKEVLAWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAA 806

Query: 1045 DVAMCAMLEISKNARLKELGWKLLLQV 1071
            DVAMCAMLEI +NARLKELGW+LLLQV
Sbjct: 807  DVAMCAMLEIDRNARLKELGWRLLLQV 833


>gi|413919673|gb|AFW59605.1| chloroplast DNA polymerase [Zea mays]
          Length = 1033

 Score = 1016 bits (2628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/771 (64%), Positives = 592/771 (76%), Gaps = 29/771 (3%)

Query: 314  EGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACD 373
            E T Q  +     + E L+  R  L++ Y  V+VVDNV +A+ VV +LT KY++ +HACD
Sbjct: 227  EETVQPSRTRAPSSQESLDA-RKALSTIYDKVLVVDNVMSARSVVQLLTTKYRNYIHACD 285

Query: 374  TEVAKIDVKQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAP 430
            TEVA I+VKQETPV HG+V CFSIYSG    EADFGNGK+CIWVD+LDGG  D+L EF P
Sbjct: 286  TEVANINVKQETPVGHGKVTCFSIYSGTKGAEADFGNGKTCIWVDVLDGGP-DVLMEFVP 344

Query: 431  FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490
            FFED SI+KVWHNYSFD+HV+ENYG+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D
Sbjct: 345  FFEDSSIRKVWHNYSFDSHVIENYGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTND 404

Query: 491  RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQRE 550
             +VM    K  QK           +GK SMK IFGR+K+KKDGS GKI+ I PVE LQRE
Sbjct: 405  HRVMGVVPKELQK-----------IGKRSMKTIFGRKKIKKDGSEGKITAIEPVEILQRE 453

Query: 551  ERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
            +RELWI YS+ DS++TL+LY+SLK KL    W  DG P PG S++DFY+EYW PFG ILV
Sbjct: 454  DRELWICYSSLDSMSTLRLYESLKSKLERKPWTFDGYPRPGGSLYDFYEEYWCPFGAILV 513

Query: 611  KMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
            KMET GMLVDR YLSEIEKVA A++E+A ++FRKWASK+CPDAKYMNV SDTQ+RQL FG
Sbjct: 514  KMETAGMLVDRAYLSEIEKVAVAQRESAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFG 573

Query: 671  GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWP 730
            G  N     + LP  +  KVPN E  ++EGKK P K+R I L SI  DL T+++TA+GWP
Sbjct: 574  GIENIYKSGDFLPKSKAIKVPNNETAVSEGKKVP-KYRTIDLFSIVEDLKTDIFTASGWP 632

Query: 731  SVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYK-------GAVASNNKIFATEQ 783
            SV G AL+ LA  + +  D V    D++D  C   +E          +  +    F   +
Sbjct: 633  SVSGAALRNLAGKVPS--DLVYSTDDVNDDECGIHSEISHCDLEDTSSYGTAYDAFGGGK 690

Query: 784  EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPN 843
            E +EAC AI+ALCE+CSI+SLISNFILPLQG+++S K GR+HCSLNINTETGRLSAR PN
Sbjct: 691  EGKEACHAIAALCEICSINSLISNFILPLQGNHISCKEGRIHCSLNINTETGRLSARAPN 750

Query: 844  LQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
            LQNQPALEKDRYKIRQAF+A PGN+LIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHS
Sbjct: 751  LQNQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLADCKSMLDAFKAGGDFHS 810

Query: 904  RTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
            RTAMNMY HIR AVE  +V+LEWH   G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKT
Sbjct: 811  RTAMNMYQHIREAVEEEKVILEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKT 870

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLARDWKVSV+EAK T+ LWY++R+EVL WQ  +K+ +     V+TLLGR+RRFP + 
Sbjct: 871  AHGLARDWKVSVKEAKDTLKLWYSDRKEVLAWQMKQKQLAHEKREVYTLLGRSRRFPNMA 930

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              T  QR HIERAAIN PVQGSAADVAMCAMLEI +N RLKELGW LLLQV
Sbjct: 931  HATSGQRGHIERAAINAPVQGSAADVAMCAMLEIDRNTRLKELGWTLLLQV 981


>gi|242080755|ref|XP_002445146.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
 gi|241941496|gb|EES14641.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
          Length = 1178

 Score = 1014 bits (2621), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/746 (66%), Positives = 583/746 (78%), Gaps = 24/746 (3%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R  LAS Y  V+VVDN+ +A+ +V +LT KYK  +HACDTEVA I+ K+ETPV HGEVIC
Sbjct: 396  RKALASIYDKVLVVDNIESARSIVKLLTTKYKSFIHACDTEVANIEAKEETPVGHGEVIC 455

Query: 395  FSIYSG----PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHV 450
            FSIYS       ADFGNGK+CIWVD+LDGG R +L EFAPFFEDPSIKKVWHNYSFDNHV
Sbjct: 456  FSIYSANSDVQAADFGNGKTCIWVDVLDGG-RGVLMEFAPFFEDPSIKKVWHNYSFDNHV 514

Query: 451  LENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNT 510
            +ENYG+KV+GF ADTMH+ARLWDSSR+ +GGYSLE LT DR+VM        +D+ K   
Sbjct: 515  IENYGIKVAGFRADTMHLARLWDSSRKIDGGYSLEGLTNDRRVMD----TVPEDLPKP-- 568

Query: 511  DEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLY 570
                 GKISMK IFGR+K++KDGS GK+ +I PV+ELQRE+RELWI YS+ DS++TL+LY
Sbjct: 569  -----GKISMKTIFGRKKVRKDGSEGKVVSIDPVKELQREDRELWICYSSLDSMSTLRLY 623

Query: 571  KSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKV 630
            +SLK+KL    W LDG   P  +M+DFY++YW PFG +LVKMETEGMLVDR YLSEIEK 
Sbjct: 624  ESLKRKLETRRWVLDG--CPRGTMYDFYEQYWCPFGALLVKMETEGMLVDRGYLSEIEKA 681

Query: 631  ARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKV 690
            A AE+E A ++FRKWASK+CPDAKYMNV SDTQ+RQLLFGG  N     E+ P  + FKV
Sbjct: 682  AIAERELAADKFRKWASKYCPDAKYMNVNSDTQIRQLLFGGIENRHKSGETWPQSKTFKV 741

Query: 691  PNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDC 750
             N E V  EGKKT SK+R I L SI  DL T+M+T +GWPS  GDAL++LA  I  EY  
Sbjct: 742  LNEENVATEGKKT-SKYRTIKLCSIVEDLKTDMFTPSGWPSASGDALRSLAGKIPTEYIY 800

Query: 751  VDG--AHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNF 808
              G    D +DS  +E  +   +  +  + F   +  +EAC AI+ALCE+CSIDSLISNF
Sbjct: 801  TMGDIQEDDEDSSGSENPDGDSSYGTAYEAFGGGKNGKEACHAIAALCEICSIDSLISNF 860

Query: 809  ILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            ILPLQG  +S   GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQAF+A PGNS
Sbjct: 861  ILPLQGDRISCAEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNS 920

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH- 927
            LIVADYGQLELRILAHL NCKSMLDAFKAGGDFHSRTAMNMY HIR+AV   +VLLEWH 
Sbjct: 921  LIVADYGQLELRILAHLTNCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVHEKKVLLEWHP 980

Query: 928  --GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNE 985
              G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKT +GL+RDWKVSV+EA+ T+ LWY +
Sbjct: 981  QPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTALGLSRDWKVSVKEARDTLKLWYGD 1040

Query: 986  RQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAAD 1045
            R+EVL WQ+++KK +R    V+TLLGR+R FP +      QR HIERAAIN PVQGSAAD
Sbjct: 1041 RKEVLAWQKSQKKLAREKCEVYTLLGRSRHFPNLTQFGPGQRGHIERAAINAPVQGSAAD 1100

Query: 1046 VAMCAMLEISKNARLKELGWKLLLQV 1071
            VAMCAMLEI +NARLKELGW+LLLQV
Sbjct: 1101 VAMCAMLEIERNARLKELGWRLLLQV 1126


>gi|357162284|ref|XP_003579362.1| PREDICTED: uncharacterized protein LOC100823216 [Brachypodium
            distachyon]
          Length = 1031

 Score = 1009 bits (2608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/755 (65%), Positives = 586/755 (77%), Gaps = 26/755 (3%)

Query: 328  SEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPV 387
            S++ E  R  LA+ Y  V+VVD V +A+ VV +LT KYK  +HACDTEVA IDVKQETPV
Sbjct: 240  SKEAEDARKALATIYDKVLVVDTVKSARSVVQLLTTKYKSFIHACDTEVANIDVKQETPV 299

Query: 388  DHGEVICFSIY---SGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNY 444
             HGE+ CFSIY   S  EADFGNGK CIWVD+LDGG RD+L EF PFFEDPSI+KVWHNY
Sbjct: 300  GHGEITCFSIYCASSDAEADFGNGKKCIWVDVLDGG-RDVLMEFVPFFEDPSIRKVWHNY 358

Query: 445  SFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKD 504
            SFD+HV+ENYG+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D +VM    K  Q  
Sbjct: 359  SFDSHVIENYGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDSRVMGAVPKELQN- 417

Query: 505  MSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSI 564
                      +GK SMK IFGR+K+KKDG+ GKI++I  V+ LQRE+RELWISYS+ DS+
Sbjct: 418  ----------IGKRSMKTIFGRKKIKKDGTEGKITSIESVDILQREDRELWISYSSLDSM 467

Query: 565  NTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL 624
            +TL+LY+SLK KL +  W  DG   P  SM+DFY+EYW+PFG ILVKMET GMLVDR YL
Sbjct: 468  STLRLYESLKSKLEKKHWTFDG--CPRGSMYDFYEEYWRPFGAILVKMETAGMLVDRSYL 525

Query: 625  SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPI 684
            SEIEKVA A+++ A ++F+KWASKHCPDAKYMNV SDTQ+RQL FGG  N     E LP 
Sbjct: 526  SEIEKVAVAQRKLAADKFQKWASKHCPDAKYMNVNSDTQIRQLFFGGIENRCKPGEFLPK 585

Query: 685  ERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLA--- 741
             R  KVPN +  + EGKK P K+R I L SI  DL T+++TA+GWPSV GDAL+ LA   
Sbjct: 586  SRAIKVPNDDNTVTEGKKAP-KYRTIELFSIVEDLKTDIFTASGWPSVSGDALRNLAGKL 644

Query: 742  -RNISAEYDCVDGAHDLDDSGCTEE-TEYKGAVASNNKIFATEQEAREACDAISALCEVC 799
              +++   D  +G     DS  +E+  E   +  +  + F   ++ +EAC AI+ALCE+C
Sbjct: 645  KTDLAYPMDDAEGDRYGSDSEISEDDVEDTTSYGTAYEAFGGGRKGKEACYAIAALCEIC 704

Query: 800  SIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQ 859
            SIDSLISNFILPLQG+ +S   GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQ
Sbjct: 705  SIDSLISNFILPLQGNRISCNEGRIHCSLNINTETGRLSARAPNLQNQPALEKDRYKIRQ 764

Query: 860  AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
            AF+A PGNSLIVADYGQLELRILAHLA+C+SMLDAFKAGGDFHSRTAMNMY HIR+AVE 
Sbjct: 765  AFVAAPGNSLIVADYGQLELRILAHLADCRSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE 824

Query: 920  GQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAK 976
              VLLEWH   G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKT VGLARDWKVSV+EAK
Sbjct: 825  KTVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLARDWKVSVKEAK 884

Query: 977  KTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAIN 1036
             T+ LWY +R+EVLTWQ  +++ +     V+TLLGR+RRFP +   +  QR HIERAAIN
Sbjct: 885  DTLKLWYRDRKEVLTWQMKQRELAEEKCEVYTLLGRSRRFPNMAYASPGQRGHIERAAIN 944

Query: 1037 TPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             PVQGSAADVAMCAMLEI +N RLKELGW LLLQV
Sbjct: 945  APVQGSAADVAMCAMLEIDRNTRLKELGWTLLLQV 979


>gi|125560330|gb|EAZ05778.1| hypothetical protein OsI_28011 [Oryza sativa Indica Group]
          Length = 1033

 Score =  990 bits (2560), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/762 (64%), Positives = 582/762 (76%), Gaps = 33/762 (4%)

Query: 322  ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
            ++E++N+ KL      LA+ Y  V+VVDNV +A+ VV +LT KYK  +HACDTEVA IDV
Sbjct: 241  STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 294

Query: 382  KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
            K+ETPV HGEVICFSI SG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSIK
Sbjct: 295  KEETPVGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIK 353

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
            KVWHNYSFD+HV+EN G+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D +VM    
Sbjct: 354  KVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDHRVMD--- 410

Query: 499  KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
             A  KD+ K        GK+SMK IFGR+K++KDGS GK  +I PVE+LQRE+RELWI Y
Sbjct: 411  -AVVKDIPK-------TGKVSMKTIFGRKKVRKDGSEGKTISIEPVEKLQREDRELWICY 462

Query: 559  SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
            S+ DS++TLKLY+SLK KL    W  D    P  +M+DFY+EYW+PFG +LVKMETEG+L
Sbjct: 463  SSLDSMSTLKLYESLKNKLEAKEWIFDD--CPRGTMYDFYEEYWRPFGALLVKMETEGVL 520

Query: 619  VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
            VDR YLSEIEK A  E+E A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG  N    
Sbjct: 521  VDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIENRNKR 580

Query: 679  SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALK 738
             E+ P  + FKVPN EG+  EGKKTP K R I L +I  DL  +M+T TGWPSV GD L+
Sbjct: 581  GETWPQSKTFKVPNDEGITTEGKKTP-KSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLR 639

Query: 739  TLARNI-SAEYDCVDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEAREACDAI 792
            +LA  I +     +D   + D+ G +     ++ E      +  + F    + REAC AI
Sbjct: 640  SLAGKIPTNRIYKIDDGQEFDEDGSSLELPEQDIEDTSLYGTAYEAFGGGNKGREACHAI 699

Query: 793  SALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEK 852
            +ALCEV SID LIS FI+PLQG  +S K GR+HCSLNINTETGRLSAR PNLQNQPALEK
Sbjct: 700  AALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNINTETGRLSARTPNLQNQPALEK 759

Query: 853  DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
            DRYKIRQAF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTAMNMY H
Sbjct: 760  DRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 819

Query: 913  IRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +R+AVE  +VLLEWH   G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKT VGL+ DWK
Sbjct: 820  VRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWK 879

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            V V EA+ T+ LWY +R+EV  WQ+ +K  +     V+TLLGR+R+FP +      Q+ H
Sbjct: 880  VEVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQKGH 939

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +ERAAIN PVQGSAADVAMCAMLEI +NARLKELGW+LLLQV
Sbjct: 940  VERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQV 981


>gi|115475031|ref|NP_001061112.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|40253292|dbj|BAD05227.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253609|dbj|BAD05554.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|113623081|dbj|BAF23026.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|215737038|dbj|BAG95967.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640001|gb|EEE68133.1| hypothetical protein OsJ_26226 [Oryza sativa Japonica Group]
          Length = 1033

 Score =  989 bits (2557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/762 (64%), Positives = 582/762 (76%), Gaps = 33/762 (4%)

Query: 322  ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
            ++E++N+ KL      LA+ Y  V+VVDNV +A+ VV +LT KYK  +HACDTEVA IDV
Sbjct: 241  STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 294

Query: 382  KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
            K+ETPV HGEVICFSI SG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDP IK
Sbjct: 295  KEETPVGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPFIK 353

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
            KVWHNYSFD HV+EN G+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D +VM    
Sbjct: 354  KVWHNYSFDIHVIENCGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDYRVMD--- 410

Query: 499  KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
             A  KD+ K        GK+SMK IFGR+K++KDGS GK  +I PVE+LQRE+RELWI Y
Sbjct: 411  -AVLKDIPK-------TGKVSMKTIFGRKKVRKDGSEGKTISIEPVEKLQREDRELWICY 462

Query: 559  SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
            S+ DS++TLKLY+SLK KL    W  D    P  +M+DFY+EYW+PFG +LVKMETEG+L
Sbjct: 463  SSLDSMSTLKLYESLKNKLEAKEWIFDD--CPRGTMYDFYEEYWRPFGALLVKMETEGVL 520

Query: 619  VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
            VDR YLSEIEK A  E+E A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG  N    
Sbjct: 521  VDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIENRNKR 580

Query: 679  SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALK 738
             E+ P  + FKVPN EG+  EGKKTP K R I L +I  DL  +M+T TGWPSV GD L+
Sbjct: 581  GETWPQSKTFKVPNDEGIATEGKKTP-KSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLR 639

Query: 739  TLARNISAEYDC-VDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEAREACDAI 792
            +LA  I  ++   +D   + D+ G +     ++ E      +  + F   ++ REAC AI
Sbjct: 640  SLAGKIPTDHIYKIDDGQEFDEDGSSLELPEQDIEDTSPYGTAYEAFGGGKKGREACHAI 699

Query: 793  SALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEK 852
            +ALCEV SID LIS FI+PLQG  +S K GR+HCSLNINTETGRLSAR PNLQNQPALEK
Sbjct: 700  AALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNINTETGRLSARTPNLQNQPALEK 759

Query: 853  DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
            DRYKIR AF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTAMNMY H
Sbjct: 760  DRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 819

Query: 913  IRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +R+AVE  +VLLEWH   G+DKPPVPLLKDAF +ERRKAKMLNFSIAYGKT VGL+ DWK
Sbjct: 820  VRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWK 879

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            VSV EA+ T+ LWY +R+EV  WQ+ +K  +     V+TLLGR+R+FP +      Q+ H
Sbjct: 880  VSVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQKGH 939

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +ERAAIN PVQGSAADVAMCAMLEI +NARLKELGW+LLLQV
Sbjct: 940  VERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQV 981


>gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa]
          Length = 976

 Score =  987 bits (2552), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/762 (64%), Positives = 581/762 (76%), Gaps = 33/762 (4%)

Query: 322  ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
            ++E++N+ KL      LA+ Y  V+VVDNV +A+ VV +LT KYK  +HACDTEVA IDV
Sbjct: 184  STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 237

Query: 382  KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
            K+ETPV HGEVICFSI SG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDP IK
Sbjct: 238  KEETPVGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPFIK 296

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
            KVWHNYSFD HV+EN G+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D +VM    
Sbjct: 297  KVWHNYSFDIHVIENCGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDYRVMD--- 353

Query: 499  KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
             A  KD+ K        GK+SMK IFGR+K++KDGS GK  +I PVE+LQRE+RELWI Y
Sbjct: 354  -AVLKDIPK-------TGKVSMKTIFGRKKVRKDGSEGKTISIEPVEKLQREDRELWICY 405

Query: 559  SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
            S+ DS++TLKLY+SLK KL    W  D    P  +M+DFY+EYW+PFG +LVKMETEG+L
Sbjct: 406  SSLDSMSTLKLYESLKNKLEAKEWIFDD--CPRGTMYDFYEEYWRPFGALLVKMETEGVL 463

Query: 619  VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
            VDR YLSEIEK A  E+E A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG  N    
Sbjct: 464  VDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIENRNKR 523

Query: 679  SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALK 738
             E+ P  + FKVPN EG+  EGKKTP K R I L +I  DL  +M+T TGWPSV GD L+
Sbjct: 524  GETWPQSKTFKVPNDEGIATEGKKTP-KSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLR 582

Query: 739  TLARNISAEYDC-VDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEAREACDAI 792
            +LA  I  ++   +D   + D+ G +     ++ E      +  + F   ++ REAC AI
Sbjct: 583  SLAGKIPTDHIYKIDDGQEFDEDGSSLELPEQDIEDTSPYGTAYEAFGGGKKGREACHAI 642

Query: 793  SALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEK 852
            +ALCEV SID LIS FI+PLQG  +S K GR+HCSLNINTETGRLSAR PNLQNQP LEK
Sbjct: 643  AALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNINTETGRLSARTPNLQNQPVLEK 702

Query: 853  DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
            DRYKIR AF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTAMNMY H
Sbjct: 703  DRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQH 762

Query: 913  IRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +R+AVE  +VLLEWH   G+DKPPVPLLKDAF +ERRKAKMLNFSIAYGKT VGL+ DWK
Sbjct: 763  VRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWK 822

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            VSV EA+ T+ LWY +R+EV  WQ+ +K  +     V+TLLGR+R+FP +      Q+ H
Sbjct: 823  VSVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQKGH 882

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +ERAAIN PVQGSAADVAMCAMLEI +NARLKELGW+LLLQV
Sbjct: 883  VERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQV 924


>gi|218200555|gb|EEC82982.1| hypothetical protein OsI_28013 [Oryza sativa Indica Group]
          Length = 1028

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/767 (62%), Positives = 576/767 (75%), Gaps = 38/767 (4%)

Query: 322  ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
            ++E++N+ KL      LA+ Y  V+VVDNV +A+ VV +LT KYK  +HACDTEVA IDV
Sbjct: 231  STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 284

Query: 382  KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
            K+ETPV HGEVICFSI SG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSIK
Sbjct: 285  KEETPVGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIK 343

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
            KVWHNYSFDNHV+EN G+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D ++M+   
Sbjct: 344  KVWHNYSFDNHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMN--- 400

Query: 499  KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
             A  KD+ K        GK+SMK IFGR+K++K+GS GK  +I PVE+LQRE+RELWI Y
Sbjct: 401  -AVLKDIHK-------TGKVSMKTIFGRKKVRKNGSEGKTISIEPVEKLQREDRELWICY 452

Query: 559  SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
            S+ DS++TLKLY+SLK KL    W  DG   P  +M+DFY+EYW+PFG +LVKMETEGML
Sbjct: 453  SSLDSMSTLKLYESLKNKLEAKEWIFDG--CPRGTMYDFYEEYWRPFGALLVKMETEGML 510

Query: 619  VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
            VDR YLSEIEK A  E++ A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG  N    
Sbjct: 511  VDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIKNRNKP 570

Query: 679  SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLP-----TEMYTATGWPSVG 733
             E+ P  + FKVPN E +  EGKKT SK R I L +I  DL       +  T TGW  V 
Sbjct: 571  GETWPQSKTFKVPNDESIATEGKKT-SKSRTIKLFTIVEDLKLFTTEGKKTTKTGWLKVR 629

Query: 734  GDALKTLARNISAEYDC-VDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEARE 787
            GD L +LA  I  ++   +D   + D+ G +     ++ E      +  + F   ++ RE
Sbjct: 630  GDVLWSLAGKIPTDHIYKIDDGQEFDEDGSSVELPEQDIENTSPYGTAYEAFGGGKKGRE 689

Query: 788  ACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQ 847
            AC AI+ALCE  SID LIS FI+PLQG  +S K GR+HCSLNINTETGRLSAR PNLQNQ
Sbjct: 690  ACHAIAALCEAFSIDKLISGFIIPLQGDRISCKEGRIHCSLNINTETGRLSARTPNLQNQ 749

Query: 848  PALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
            PALEKDRYKIRQAF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTAM
Sbjct: 750  PALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAM 809

Query: 908  NMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGL 964
            NMY H+R+AVE  +VLLEWH   G+DKPPVPLLKD F +ERRKAKMLNFSIAYGKT VGL
Sbjct: 810  NMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDTFGAERRKAKMLNFSIAYGKTAVGL 869

Query: 965  ARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTR 1024
            ++DW V V EA+ T+ LWY +R+EV  WQ+ +K  +     V+TLLGR+R+FP +     
Sbjct: 870  SQDWNVEVREARDTLKLWYRDRKEVSAWQKKQKALALEKCEVYTLLGRSRQFPNMTHAGP 929

Query: 1025 SQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             Q+ H+ERAAIN P QGSAADVAMCAMLEI +NARLKELGW+LLLQV
Sbjct: 930  GQKGHVERAAINAPGQGSAADVAMCAMLEIERNARLKELGWRLLLQV 976


>gi|40253294|dbj|BAD05229.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253611|dbj|BAD05556.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 1035

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/768 (62%), Positives = 578/768 (75%), Gaps = 39/768 (5%)

Query: 322  ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
            ++E++N+ KL      LA+ Y  V+VVDNV +A+ VV +LT KYK  +HACDTEVA IDV
Sbjct: 237  STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 290

Query: 382  KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
            K+ETPV HGEVICFSIYSG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSIK
Sbjct: 291  KEETPVGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIK 349

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
            KVWHNYSFD+HV+EN G+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D ++M+   
Sbjct: 350  KVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMN--- 406

Query: 499  KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
             A  KD+ K        GK+SMK IFGR+ ++K+GS GK  +I PV++LQRE+RELWI Y
Sbjct: 407  -AVLKDIHK-------TGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDRELWICY 458

Query: 559  SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
            S+ DS++TLKLY+SLK KL    W  DG   P  +M+DFY+EYW+PFG +LVKMETEGM 
Sbjct: 459  SSLDSMSTLKLYESLKNKLEAKEWIFDG--CPRGTMYDFYEEYWRPFGALLVKMETEGMF 516

Query: 619  VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
            VDR YLSEIEK A  E++ A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG  N    
Sbjct: 517  VDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIKNRNKP 576

Query: 679  SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLP-----TEMYTATGWPSVG 733
             E+ P  + FKVPN E +  EGKK P K R I L +I  DL       +  T TGW  V 
Sbjct: 577  GETWPQSKAFKVPNDESIATEGKKIP-KSRTIKLFTIVEDLKLFTTEGKKTTKTGWLKVR 635

Query: 734  GDALKTLARNISAE--YDCVDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEAR 786
            GD L +LA  I  +  Y   D   + D+ G +     ++ E      +  + F   ++ R
Sbjct: 636  GDVLWSLAGKIPTDHIYKIDDDGQEFDEDGSSVELPEQDIEDTSPYGTAYEAFGGGKKGR 695

Query: 787  EACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQN 846
            EAC AI+ALCEV SID LIS FI+PLQG ++S K GR+HCSLNINTETGRLSAR P+LQN
Sbjct: 696  EACHAIAALCEVFSIDKLISGFIVPLQGDHISCKEGRIHCSLNINTETGRLSARTPSLQN 755

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
            QPALEKDRYKIRQAF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTA
Sbjct: 756  QPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTA 815

Query: 907  MNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVG 963
            MNMY H+R+AVE  +VLLEWH   G+DKPPVPLLKDAF +ERRKAKMLNFSIAYGKT VG
Sbjct: 816  MNMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVG 875

Query: 964  LARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLT 1023
            L++DW V V EA+ T+ LW+ +R+E+  WQ+ +K  +     V+TLLGR+R+FP +    
Sbjct: 876  LSQDWNVEVREARDTLKLWHRDRKEISAWQKKQKALAFEKCEVYTLLGRSRQFPNMTHAG 935

Query: 1024 RSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              Q++H+ERAAIN PVQGSAADVAMCAMLEI +NARLKELGW+LLLQV
Sbjct: 936  PGQKSHVERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQV 983


>gi|222640002|gb|EEE68134.1| hypothetical protein OsJ_26228 [Oryza sativa Japonica Group]
          Length = 982

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/768 (62%), Positives = 578/768 (75%), Gaps = 39/768 (5%)

Query: 322  ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
            ++E++N+ KL      LA+ Y  V+VVDNV +A+ VV +LT KYK  +HACDTEVA IDV
Sbjct: 184  STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 237

Query: 382  KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
            K+ETPV HGEVICFSIYSG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSIK
Sbjct: 238  KEETPVGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIK 296

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
            KVWHNYSFD+HV+EN G+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D ++M+   
Sbjct: 297  KVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMN--- 353

Query: 499  KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
             A  KD+ K        GK+SMK IFGR+ ++K+GS GK  +I PV++LQRE+RELWI Y
Sbjct: 354  -AVLKDIHK-------TGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDRELWICY 405

Query: 559  SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
            S+ DS++TLKLY+SLK KL    W  DG   P  +M+DFY+EYW+PFG +LVKMETEGM 
Sbjct: 406  SSLDSMSTLKLYESLKNKLEAKEWIFDG--CPRGTMYDFYEEYWRPFGALLVKMETEGMF 463

Query: 619  VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDD 678
            VDR YLSEIEK A  E++ A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG  N    
Sbjct: 464  VDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIKNRNKP 523

Query: 679  SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLP-----TEMYTATGWPSVG 733
             E+ P  + FKVPN E +  EGKK P K R I L +I  DL       +  T TGW  V 
Sbjct: 524  GETWPQSKAFKVPNDESIATEGKKIP-KSRTIKLFTIVEDLKLFTTEGKKTTKTGWLKVR 582

Query: 734  GDALKTLARNISAE--YDCVDGAHDLDDSGCT-----EETEYKGAVASNNKIFATEQEAR 786
            GD L +LA  I  +  Y   D   + D+ G +     ++ E      +  + F   ++ R
Sbjct: 583  GDVLWSLAGKIPTDHIYKIDDDGQEFDEDGSSVELPEQDIEDTSPYGTAYEAFGGGKKGR 642

Query: 787  EACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQN 846
            EAC AI+ALCEV SID LIS FI+PLQG ++S K GR+HCSLNINTETGRLSAR P+LQN
Sbjct: 643  EACHAIAALCEVFSIDKLISGFIVPLQGDHISCKEGRIHCSLNINTETGRLSARTPSLQN 702

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
            QPALEKDRYKIRQAF+A PGN+LIVADYGQLELRILAHL NCKSML+AFKAGGDFHSRTA
Sbjct: 703  QPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTA 762

Query: 907  MNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVG 963
            MNMY H+R+AVE  +VLLEWH   G+DKPPVPLLKDAF +ERRKAKMLNFSIAYGKT VG
Sbjct: 763  MNMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVG 822

Query: 964  LARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLT 1023
            L++DW V V EA+ T+ LW+ +R+E+  WQ+ +K  +     V+TLLGR+R+FP +    
Sbjct: 823  LSQDWNVEVREARDTLKLWHRDRKEISAWQKKQKALAFEKCEVYTLLGRSRQFPNMTHAG 882

Query: 1024 RSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              Q++H+ERAAIN PVQGSAADVAMCAMLEI +NARLKELGW+LLLQV
Sbjct: 883  PGQKSHVERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQV 930


>gi|39545749|emb|CAE04166.3| OSJNBb0034I13.15 [Oryza sativa Japonica Group]
          Length = 1000

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/747 (64%), Positives = 568/747 (76%), Gaps = 57/747 (7%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R  LA+ Y  V+VVDNV +A+ VV +LT+KYK+ +HACDTEVA IDVKQETPV HGEVIC
Sbjct: 249  RKALATVYDKVLVVDNVKSARSVVQLLTSKYKNFIHACDTEVANIDVKQETPVSHGEVIC 308

Query: 395  FSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
            FSIYSG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSI+KVWHNYSFD+HV+
Sbjct: 309  FSIYSGNSDAEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIRKVWHNYSFDSHVI 367

Query: 452  ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
            ENYG+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D +VM    K  QK        
Sbjct: 368  ENYGIKVAGFHADTMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQK-------- 419

Query: 512  EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
               +GK SMK IFG +K+KKDGSAGKI ++ PVE LQR++RE+WI YS+ DS++TL+LY+
Sbjct: 420  ---IGKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYE 476

Query: 572  SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVA 631
            SLK KL +  W  DG   P  SM+DFY+EYW+PFG +LVKMET GMLVDR YLSEIEKVA
Sbjct: 477  SLKSKLEKKHWTFDG--CPRGSMYDFYEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVA 534

Query: 632  RAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP 691
             A+++ A ++FRKWASK+CPDAKYMNV SDTQ+RQL FGG  N     E+LP  R  KVP
Sbjct: 535  VAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIENRCKPGETLPKSRTIKVP 594

Query: 692  NTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCV 751
            N   +IAEGKKTP K+  I L SI  DL T+++TA+GWPSV GDAL++LA  +  +    
Sbjct: 595  NDGSLIAEGKKTP-KYCTIELFSIVEDLKTDLFTASGWPSVSGDALRSLAGKLPTDLVYT 653

Query: 752  DGAHDLDDSGCTEETEY----KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISN 807
                + DDSG +E +E+      +  +  + F   ++ +EAC AI+ALCE+CSIDSLISN
Sbjct: 654  TDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHAIAALCEICSIDSLISN 713

Query: 808  FILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN 867
            FILP                                LQNQPALEKDRYKIRQAF+A PGN
Sbjct: 714  FILP--------------------------------LQNQPALEKDRYKIRQAFVAAPGN 741

Query: 868  SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
            SLIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHSRTAMNMY HIR+AVE  +VLLEWH
Sbjct: 742  SLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWH 801

Query: 928  ---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYN 984
               G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKTPVGLARDWKVSV+EAK T+ LWY 
Sbjct: 802  PQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYR 861

Query: 985  ERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAA 1044
            +R+EVL WQ  +K+ ++    V+TLLGR+RRFP +   T  QR HIERAAIN PVQGSAA
Sbjct: 862  DRKEVLAWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAA 921

Query: 1045 DVAMCAMLEISKNARLKELGWKLLLQV 1071
            DVAMCAMLEI +NARLKELGW+LLLQV
Sbjct: 922  DVAMCAMLEIDRNARLKELGWRLLLQV 948


>gi|242074498|ref|XP_002447185.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
 gi|241938368|gb|EES11513.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
          Length = 992

 Score =  934 bits (2415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/747 (63%), Positives = 558/747 (74%), Gaps = 61/747 (8%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R  LA+ Y  V+VVDNV +A+ VV +LT KY++ +HACDTEV  IDVKQETPV HG+V C
Sbjct: 245  RKALATIYDKVLVVDNVMSARSVVQLLTTKYRNYIHACDTEV-DIDVKQETPVGHGKVTC 303

Query: 395  FSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
            FSIYSG    EADFGNGK+CIWVD+LDGG  D+L EFAPFFED SI+KVWHNYSFD+HV+
Sbjct: 304  FSIYSGTKGAEADFGNGKTCIWVDVLDGGP-DVLMEFAPFFEDSSIRKVWHNYSFDSHVI 362

Query: 452  ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
            ENYG+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D +VM    K  +K        
Sbjct: 363  ENYGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDHRVMGVVSKELRK-------- 414

Query: 512  EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
               +GK SMK IFGR+K+KKDGS GKI+ I PVE LQRE+RELWI YS+ DS++TLKLY+
Sbjct: 415  ---IGKRSMKTIFGRKKIKKDGSEGKITAIEPVEILQREDRELWICYSSLDSMSTLKLYE 471

Query: 572  SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVA 631
            SLK KL    W  DG   P  S++DFY+EYW+PFG ILVKMET GMLVDR YLSEIEKVA
Sbjct: 472  SLKSKLERKPWTFDG--CPRGSLYDFYEEYWRPFGAILVKMETAGMLVDRAYLSEIEKVA 529

Query: 632  RAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP 691
             A+++ A ++FR WASK+CPDAKYMNV SDTQ+RQL FGG  N     + LP  +  KVP
Sbjct: 530  VAQRKLAADKFRNWASKYCPDAKYMNVNSDTQIRQLFFGGIENICKPGDFLPKSKAIKVP 589

Query: 692  NTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAE--YD 749
            N E  ++EGKK P K+R I L +I  DL T+++TA+GWPSV GDAL+ LA  + ++  Y 
Sbjct: 590  NDETAVSEGKKVP-KYRTIELFNIVEDLKTDIFTASGWPSVSGDALRNLAGKVPSDLVYS 648

Query: 750  CVD--GAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISN 807
              D  G+H  + S C  + E   +  +    F   +E +EAC AI+ALCE+CSIDSLISN
Sbjct: 649  TDDECGSHS-EISNC--DLEDTSSYGTAYDAFGGGKEGKEACHAIAALCEICSIDSLISN 705

Query: 808  FILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN 867
            FILP                                LQNQPALEKDRYKIRQAF+A PGN
Sbjct: 706  FILP--------------------------------LQNQPALEKDRYKIRQAFVAAPGN 733

Query: 868  SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
            +LIVADYGQLELRILAHLA+CKSMLDAF+AGGDFHSRTAMNMYPHIR AV+  +V+LEWH
Sbjct: 734  TLIVADYGQLELRILAHLADCKSMLDAFRAGGDFHSRTAMNMYPHIREAVDEEKVILEWH 793

Query: 928  ---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYN 984
               G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKTP GLARDWKVSV+EAK T+ LWY+
Sbjct: 794  PQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPHGLARDWKVSVKEAKDTLKLWYS 853

Query: 985  ERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAA 1044
            +R+EVL WQ  +K+ +   + V+TLLGR+RRFP +   T  QR HIERAAIN PVQGSAA
Sbjct: 854  DRKEVLAWQMKQKQLAHEKSEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAA 913

Query: 1045 DVAMCAMLEISKNARLKELGWKLLLQV 1071
            DVAMCAMLEI +N RLKELGW LLLQV
Sbjct: 914  DVAMCAMLEIDRNTRLKELGWTLLLQV 940


>gi|168066821|ref|XP_001785330.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663085|gb|EDQ49871.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/747 (60%), Positives = 562/747 (75%), Gaps = 28/747 (3%)

Query: 346  MVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADF 405
            MV+D+V  AK VV  L  +YK  VHACDTEVA+IDVK+E+PV HG + CFSIY GP A+F
Sbjct: 1    MVIDSVDKAKMVVKQLMREYKDAVHACDTEVAEIDVKKESPVGHGRMTCFSIYCGPSANF 60

Query: 406  GNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADT 465
            GNGK+ +WVD+LDGG   +L  F  +FEDPSIKKVWHNYSFD H+L  +G+   GF+ADT
Sbjct: 61   GNGKNRLWVDVLDGGD-GILEVFRRYFEDPSIKKVWHNYSFDKHILSRHGIHPQGFYADT 119

Query: 466  MHMARLWDSSRR-TEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIF 524
            MH+ARL DS+RR  +GGYSLE L+ D KVM      Y   +++ + D   +GK SMK++F
Sbjct: 120  MHLARLHDSARRGAKGGYSLEVLSADEKVMD----GYLGHLTEED-DITLVGKKSMKELF 174

Query: 525  GRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLKKKLLEMSW 582
            G+  LKKDGS GKI TI PV+ELQR  E R+ WI YS FD++ T +L+ SL+ KL    W
Sbjct: 175  GKANLKKDGSPGKIKTIPPVDELQRDGELRDAWIHYSTFDTVCTWRLFVSLQHKLSNTPW 234

Query: 583  KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRF 642
             +      G SM+DFY++YW+PFGE+LV+ME +GMLVD ++L+ +EKVARA+QE +V+RF
Sbjct: 235  NVVDLKEKG-SMYDFYEKYWRPFGEVLVQMEADGMLVDCDHLATVEKVARAQQEISVSRF 293

Query: 643  RKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKK 702
            RKWA+K+CPDA  MNVGSD Q+RQ LFGG  N K+  + LP+ER+F VPNT+G I EGKK
Sbjct: 294  RKWAAKYCPDAAMMNVGSDAQIRQFLFGGTANRKNAEQVLPMERVFSVPNTDGFIEEGKK 353

Query: 703  TPSKFRNITLRSIG---VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDG---AHD 756
               + R I +R +    + +P E YT++GWP+VGG A+K LA  ++ +Y  ++      D
Sbjct: 354  VAKQTRPIVIRGLANFNIRIPVETYTSSGWPAVGGAAIKALAGKVAIDYAALEEDSEVED 413

Query: 757  LDDSGCTE--------ETEYKGAVASNNKI---FATEQEAREACDAISALCEVCSIDSLI 805
            +DD   +E        ETE++  ++   K    F    E +EAC A++ALCEV SI++L+
Sbjct: 414  MDDIEESESLLTSAGVETEHEEDLSVYGKAYQAFGGGLEGKEACMALAALCEVASINTLL 473

Query: 806  SNFILPLQGSNV-SGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
            SNFI PLQG+++ S  +GRVHCSLNINTETGRLSARRP+LQNQPALEKDRYKIRQAF+A 
Sbjct: 474  SNFIEPLQGNDIKSASDGRVHCSLNINTETGRLSARRPSLQNQPALEKDRYKIRQAFVAA 533

Query: 865  PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLL 924
            PG SL+VADYGQLELR+LAHLA+CKSM  AFKAGGDFHSRTAMNMYPH+R AVE  +VLL
Sbjct: 534  PGKSLVVADYGQLELRLLAHLADCKSMKAAFKAGGDFHSRTAMNMYPHVREAVEKERVLL 593

Query: 925  EWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYN 984
            EW    KPP PLLKD F SERRKAKMLNFSIAYGKT +GLA+DWKV V+EAK TVDLWY+
Sbjct: 594  EWESHGKPPAPLLKDIFGSERRKAKMLNFSIAYGKTAMGLAKDWKVKVDEAKATVDLWYS 653

Query: 985  ERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAA 1044
            +R EVL WQ+ RK+E+     VHTLLGRAR  P I S     R+H+ERAAINTPVQGSAA
Sbjct: 654  DRPEVLAWQKERKQEAHTSLRVHTLLGRARHLPDINSSNALLRSHMERAAINTPVQGSAA 713

Query: 1045 DVAMCAMLEISKNARLKELGWKLLLQV 1071
            DVAMCAMLEI++N++L+ELGWKLLLQV
Sbjct: 714  DVAMCAMLEINRNSKLRELGWKLLLQV 740


>gi|357139699|ref|XP_003571415.1| PREDICTED: uncharacterized protein LOC100833898 [Brachypodium
            distachyon]
          Length = 986

 Score =  909 bits (2348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/753 (61%), Positives = 559/753 (74%), Gaps = 41/753 (5%)

Query: 335  RSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
            R  LA  Y  V+VVD++ +AK VV +LT KYK+ VHAC TEV  IDVK+ETPVDHGEVIC
Sbjct: 207  RKALAGIYDKVLVVDSIESAKNVVQLLTTKYKNFVHACGTEVTNIDVKEETPVDHGEVIC 266

Query: 395  FSIYS---GPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
            FSIYS   G +ADFGNGK+CIWVD+LDG  RD+L EFAPFFEDPSIKKVWHNYSFD+HV+
Sbjct: 267  FSIYSENSGSQADFGNGKTCIWVDVLDGQ-RDVLMEFAPFFEDPSIKKVWHNYSFDSHVI 325

Query: 452  ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
            EN  +KV GFHADT H+ARLW+S+R+T+GGYSLE L+ D +VM++      KD+S+    
Sbjct: 326  ENCRIKVDGFHADTRHLARLWNSNRKTDGGYSLEGLSNDHRVMTD----VPKDLSE---- 377

Query: 512  EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
               +GK S K IFG++K++KDG+ GKI  + PVE+LQRE+R +WI YS+ DS+NTLKLY+
Sbjct: 378  ---IGKASKKTIFGKKKIRKDGAEGKIVNVEPVEKLQREDRNMWICYSSRDSMNTLKLYE 434

Query: 572  SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVA 631
            SLK KL    W  DG   P  +M+DFY+EY +PFG +LVKME EGMLVDR YLSEIEK+A
Sbjct: 435  SLKSKLEAKEWIFDG--CPRGTMYDFYEEYLRPFGALLVKMEREGMLVDRGYLSEIEKIA 492

Query: 632  RAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVP 691
             AE+  A ++FRKWASK+CPDAKYMN+ SD Q+ QL F G+ N     E+LP  + F+VP
Sbjct: 493  VAERNLAADKFRKWASKYCPDAKYMNINSDAQILQLFFAGRENRDTPGETLPQSKTFRVP 552

Query: 692  NTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISA----- 746
            N + V  EGK+T SKFR I L  I V+ P   +++    SV  D LKT    I       
Sbjct: 553  NDQSVAPEGKRT-SKFRTIKLCGI-VENPEVTFSS----SVSLDTLKTWPGKIPTDQIYR 606

Query: 747  -----EYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSI 801
                 E+D      +L D    E + Y  A     ++F   ++ +EAC AI+AL E  SI
Sbjct: 607  TDDDQEHDEYSNGSELPDQDVEEVSLYGTAY----EVFGGGKKGKEACHAIAALFETRSI 662

Query: 802  DSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAF 861
              LIS+FI+PLQ  ++S K GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQAF
Sbjct: 663  AKLISSFIVPLQEDHISCKEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAF 722

Query: 862  IAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
            +A PGNSL+VADYGQLELRILAHL NCKSMLDAFKAGGDFHSRTAMNMY HIR+AV   +
Sbjct: 723  VAAPGNSLVVADYGQLELRILAHLTNCKSMLDAFKAGGDFHSRTAMNMYEHIRDAVHEKK 782

Query: 922  VLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKT 978
            VLLEWH   G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKT  GL+ DWKV+V+EA+ T
Sbjct: 783  VLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAKGLSDDWKVTVDEARDT 842

Query: 979  VDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTP 1038
            + LWY +R+EV  WQ+ +K+  R    V+TLLGR+R FP +     S++  +ERAAIN P
Sbjct: 843  LKLWYRDRKEVSAWQKRQKELVREKCEVYTLLGRSRHFPNMTHAGSSKKG-VERAAINAP 901

Query: 1039 VQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            VQGSAADVAMCAMLEI +N RLKELGW+LLLQV
Sbjct: 902  VQGSAADVAMCAMLEIERNVRLKELGWRLLLQV 934


>gi|168060384|ref|XP_001782176.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666342|gb|EDQ52999.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 808

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/750 (58%), Positives = 566/750 (75%), Gaps = 29/750 (3%)

Query: 344  NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
            +VM+VD+V  A+ VV  L ++YK++VHACDTEVA IDVK+E+PV HG++ CFSIY GP A
Sbjct: 14   SVMIVDSVEKAEMVVEQLMSEYKNVVHACDTEVAGIDVKKESPVGHGQITCFSIYCGPGA 73

Query: 404  DFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHA 463
            DFG GK+ +WVD+LDGG  D+L  F  +FEDPSI+KVWHNYSFD H+L  +G+   GF+A
Sbjct: 74   DFGYGKNRLWVDVLDGGD-DVLRVFKRYFEDPSIQKVWHNYSFDKHILSRHGIHPQGFYA 132

Query: 464  DTMHMARLWDSSRR-TEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
            DTMH+ARL DS+RR ++GGY+LE L+ DRKVM    K + ++   G+    F+GK SMK+
Sbjct: 133  DTMHLARLNDSARRGSKGGYALEVLSADRKVMDYCSKNFTEE--DGSV---FVGKKSMKE 187

Query: 523  IFGRRKLKKDGSAGKISTIAPVEELQREE--RELWISYSAFDSINTLKLYKSLKKKLLEM 580
            +FG+ KLKKDG+ GKI  + PV+ELQR+E  R+ WI YS  D++ T +L+ SL+ KL   
Sbjct: 188  LFGKAKLKKDGTPGKIKVVPPVDELQRDEELRDAWIHYSTLDAVCTWRLFVSLQHKLSNT 247

Query: 581  SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
             W +      G SM+DFY++YW+PFGE+LV+ME  GMLVD ++L+ +EK+ARA+Q+ +V+
Sbjct: 248  PWSVAELRHKG-SMYDFYEKYWRPFGEVLVQMEAYGMLVDYDHLATVEKLARAQQKISVS 306

Query: 641  RFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
            RFRKWA+++CP+A  MNVGSD Q+RQ LFGG  N KD  ++LP+ER+F  PNT+G I EG
Sbjct: 307  RFRKWAARYCPNAARMNVGSDAQIRQFLFGGTANRKDADQALPMERVFSTPNTDGFIEEG 366

Query: 701  KKTPSKFRNITLRSI---GVDLPTEMYTATGWPSVGGDALKTLARNISAEYDC------- 750
            KK   K + + +  +   G+ +P E YT++GWP+VGG A++ LA  +S +Y         
Sbjct: 367  KKIAKKTKPMVITGLANHGIKIPVETYTSSGWPAVGGAAIRALAGKVSIDYSDIDDDAAE 426

Query: 751  ----VDGAHDLDDSGCTEETEYK---GAVASNNKIFATEQEAREACDAISALCEVCSIDS 803
                VD   ++  +    ET+++          K F   QE +EAC A++ALCEV SI++
Sbjct: 427  GVLEVDTEPEVSLTSAGVETDHEEDLSVYGKAYKAFLGGQEGKEACMALAALCEVASINT 486

Query: 804  LISNFILPLQGSNV-SGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFI 862
            L+SNFI PLQG+++ S  +GRVHCSLNINTETGRLSARRP+LQNQPALEKDRYKIRQAF+
Sbjct: 487  LLSNFIEPLQGNDIKSVSDGRVHCSLNINTETGRLSARRPSLQNQPALEKDRYKIRQAFV 546

Query: 863  AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
            A PG +L+VADYGQLELR+LAHLA+CKSM  AF AGGDFHSRTAMNMYPH+R AVE  +V
Sbjct: 547  AAPGKALVVADYGQLELRLLAHLADCKSMKAAFIAGGDFHSRTAMNMYPHVREAVEKDRV 606

Query: 923  LLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLW 982
            LLEW G +KPPVPLLKD F SERRKAKMLNFSIAYGKT +GLA+DW V ++EAK TVDLW
Sbjct: 607  LLEWEGLEKPPVPLLKDMFGSERRKAKMLNFSIAYGKTAMGLAKDWNVKLDEAKATVDLW 666

Query: 983  YNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPV-QG 1041
            Y++R EVL WQ+ RK+E+     VHTLLGRAR  P I S     R+H+ERAAINTPV QG
Sbjct: 667  YSDRPEVLAWQKERKQEAHETLRVHTLLGRARHLPDINSSNSLLRSHMERAAINTPVQQG 726

Query: 1042 SAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            SAADVAMCAMLEI++NARL+ELGWKLLLQV
Sbjct: 727  SAADVAMCAMLEINQNARLRELGWKLLLQV 756


>gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
 gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
          Length = 788

 Score =  875 bits (2261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/757 (57%), Positives = 544/757 (71%), Gaps = 51/757 (6%)

Query: 344  NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
            +++VV+   +A+KVV +L  KYK  VHACDTEVA IDVK+E+PV HG++ CFSIY G   
Sbjct: 2    DILVVETEKSAEKVVKLLMEKYKDEVHACDTEVADIDVKKESPVGHGKLTCFSIYCGVNV 61

Query: 404  DFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHA 463
            DFG GKS +WVDLL+GG   +L+ F P+FE+  IKK+WHNYSFD H+L NYG+K +GF+A
Sbjct: 62   DFGGGKSRVWVDLLNGG-PGILDVFRPYFENAEIKKIWHNYSFDKHILGNYGIKAAGFYA 120

Query: 464  DTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDI 523
            DTMH+ARLWDS+R   G YSLEALT D KVM  D +  Q             GK SMKD+
Sbjct: 121  DTMHLARLWDSARGGLG-YSLEALTADPKVM--DDRPLQN------------GKTSMKDL 165

Query: 524  FGRRKLKKDGSAGKISTIAPVEELQ--REERELWISYSAFDSINTLKLYKSLKKKLLEMS 581
            F    +KKDGS GK+  I PVEELQ  ++ R+ WI YSA DS+ T  L+ SLKKKLL+ S
Sbjct: 166  FAITNVKKDGSEGKLKVIPPVEELQTSKDTRDKWIYYSAHDSVCTWHLWSSLKKKLLKAS 225

Query: 582  WKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNR 641
            W ++G      +M+ FY+ YW+ FG++LV+ME EGM VD  +L+E+EKVA  +++ +V+R
Sbjct: 226  WYMEGDKR--GNMYQFYELYWRHFGDVLVRMEAEGMRVDTVHLAEVEKVALNQKQLSVSR 283

Query: 642  FRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGK 701
            F+KWAS++CPDA YMNV SD Q+RQ+LFGG  N KD S S P ER FKVPN++  +  G 
Sbjct: 284  FQKWASQYCPDAMYMNVCSDVQIRQILFGGTSNKKDPSVSYPKERTFKVPNSDNYLEPGA 343

Query: 702  KTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNI----------------S 745
            KT  K+R+I+L  I V LP E +T +GWP+V G  LK+LA N+                +
Sbjct: 344  KTVKKYRSISLEGIDVQLPVETFTPSGWPAVSGAVLKSLAGNVVTDYDEEEDEAEFSPEA 403

Query: 746  AEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLI 805
            + +    G    D     + + Y  A  +    F   +E ++AC AI+ALCE+ SID+LI
Sbjct: 404  STFITSGGVEGTDGDKSEDLSAYGKAYGA----FGGGEEGKKACMAIAALCELSSIDTLI 459

Query: 806  SNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQ-----------NQPALEKDR 854
            SNFI PLQ   + G +GRVHCSLNINTETGRLSARRPNLQ           NQPALEKDR
Sbjct: 460  SNFIQPLQNGQILGPDGRVHCSLNINTETGRLSARRPNLQASLQRSSFLNINQPALEKDR 519

Query: 855  YKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIR 914
            YKIR+AFIA PG SLIVADYGQLELRILAH++ CKSML+AF+AGGDFHSRTA+NMYPH+R
Sbjct: 520  YKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRTALNMYPHVR 579

Query: 915  NAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEE 974
             AVETG+VLLEW GE K PVPLLKD F SERRKAKMLNFSIAYGKT +GL++DWKVS+ E
Sbjct: 580  KAVETGEVLLEWSGEGKSPVPLLKDKFGSERRKAKMLNFSIAYGKTAMGLSKDWKVSLYE 639

Query: 975  AKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAA 1034
            A++T+DLWYN+R EV  WQ    + +RI   VHTLLGR+R  P I +     R H+ERAA
Sbjct: 640  AQQTLDLWYNDRSEVKEWQTDTIERARITKRVHTLLGRSRHLPDINTSISVLRGHLERAA 699

Query: 1035 INTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            INTPVQGSAADVAMCAMLEI +N+RL+ELGWKL+LQV
Sbjct: 700  INTPVQGSAADVAMCAMLEIDRNSRLRELGWKLILQV 736


>gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
 gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
          Length = 788

 Score =  875 bits (2261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/757 (57%), Positives = 544/757 (71%), Gaps = 51/757 (6%)

Query: 344  NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
            +++VV+N  +A+KVV +L  KYK  VHACDTEVA IDVK+E+PV HG++ CFSIY G   
Sbjct: 2    DILVVENEKSAEKVVKLLMEKYKDEVHACDTEVADIDVKKESPVGHGKLTCFSIYCGVNV 61

Query: 404  DFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHA 463
            DFG GKS +WVDLL+GG   +L+ F P+FE+  IKK+WHNYSFD H+L NYG+K +GF+A
Sbjct: 62   DFGGGKSRVWVDLLNGG-PGILDVFRPYFENAEIKKIWHNYSFDKHILGNYGIKAAGFYA 120

Query: 464  DTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDI 523
            DTMH+ARLWDS+R   G YSLEALT D KVM  D +  Q             GK SMKD+
Sbjct: 121  DTMHLARLWDSARGGLG-YSLEALTADPKVM--DDRPLQN------------GKTSMKDL 165

Query: 524  FGRRKLKKDGSAGKISTIAPVEELQ--REERELWISYSAFDSINTLKLYKSLKKKLLEMS 581
            F    +KKDGS GK+  I PVEELQ  ++ R+ WI YSA DS+ T  L+ SLKKKL + S
Sbjct: 166  FAITNVKKDGSEGKLKVIPPVEELQTSKDTRDKWIYYSAHDSVCTWHLWSSLKKKLQKAS 225

Query: 582  WKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNR 641
            W ++G      +M+ FY+ YW+ FG++LV+ME EGM VD  +L+E+EKVA  +++ +V+R
Sbjct: 226  WYMEGDKR--GNMYQFYELYWRHFGDVLVQMEAEGMRVDTVHLAEVEKVALNQKQLSVSR 283

Query: 642  FRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGK 701
            F+KWAS++CPDA YMNV SD Q+RQ+LFGG  N KD S S P ER FKVPN++  +  G 
Sbjct: 284  FQKWASQYCPDAMYMNVCSDVQIRQILFGGTSNKKDPSVSYPKERTFKVPNSDNYLEPGA 343

Query: 702  KTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNI----------------S 745
            KT  K+R+I+L  I V LP E +T +GWP+V G  LK+LA N+                +
Sbjct: 344  KTVKKYRSISLEGIDVQLPVETFTPSGWPAVSGAVLKSLAGNVVTDYDEEEDEAEFSPEA 403

Query: 746  AEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLI 805
            + +    G    D     + + Y  A  +    F   +E ++AC AI+ALCE+ SID+LI
Sbjct: 404  STFITSGGVEGTDGDKSEDLSAYGKAYGA----FGGGEEGKKACMAIAALCELSSIDTLI 459

Query: 806  SNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQ-----------NQPALEKDR 854
            SNFI PLQ   + G +GRVHCSLNINTETGRLSARRPNLQ           NQPALEKDR
Sbjct: 460  SNFIQPLQNGQILGPDGRVHCSLNINTETGRLSARRPNLQASLQRSSFLNINQPALEKDR 519

Query: 855  YKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIR 914
            YKIR+AFIA PG SLIVADYGQLELRILAH++ CKSML+AF+AGGDFHSRTA+NMYPH+R
Sbjct: 520  YKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRTALNMYPHVR 579

Query: 915  NAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEE 974
             AVETG+VLLEW GE K PVPLLKD F SERRKAKMLNFSIAYGKT +GL++DWKVS+ E
Sbjct: 580  KAVETGEVLLEWSGEGKSPVPLLKDKFGSERRKAKMLNFSIAYGKTAMGLSKDWKVSLYE 639

Query: 975  AKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAA 1034
            A++T+DLWYN+R EV  WQ    + +RI   VHTLLGR+R  P I +     R H+ERAA
Sbjct: 640  AQQTLDLWYNDRSEVKEWQTDTIERARITKRVHTLLGRSRHLPDINTSISVLRGHLERAA 699

Query: 1035 INTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            INTPVQGSAADVAMCAMLEI +N+RL+ELGWKL+LQV
Sbjct: 700  INTPVQGSAADVAMCAMLEIDRNSRLRELGWKLILQV 736


>gi|413917188|gb|AFW57120.1| hypothetical protein ZEAMMB73_274601 [Zea mays]
          Length = 715

 Score =  868 bits (2244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/706 (61%), Positives = 521/706 (73%), Gaps = 55/706 (7%)

Query: 375  EVAKIDVKQETPVDHGEVICFSIYSG----PEADFGNGKSCIWVDLLDGGGRDLLNEFAP 430
            +VA I+ K+ETPV HGEVICFSIYS       ADFGNGK+CIWVD+LDGG R +L EFAP
Sbjct: 4    QVANINAKEETPVGHGEVICFSIYSANSDVQAADFGNGKTCIWVDVLDGG-RGVLMEFAP 62

Query: 431  FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490
            FFED SIKKVWHNYSFD+HV+ENYG+K++GFHADTMH+ARLWDSSR+ +GGYSLE LT D
Sbjct: 63   FFEDSSIKKVWHNYSFDSHVIENYGIKIAGFHADTMHLARLWDSSRKIDGGYSLEGLTND 122

Query: 491  RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQRE 550
            R+VM        +D+ K        GK SMK IFGR+ ++KDGS GK+ ++ PV++LQRE
Sbjct: 123  RRVMD----TVPEDLPKP-------GKTSMKTIFGRKNIRKDGSEGKVVSVEPVKKLQRE 171

Query: 551  ERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
            +RELWI YS+ DS++TL+LY SLK KL    W LDG   P  +M+DFY++YW+PFG +LV
Sbjct: 172  DRELWICYSSLDSMSTLRLYDSLKSKLTTRRWILDG--CPRGTMYDFYEQYWRPFGALLV 229

Query: 611  KMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
            KMETEGMLVDR YLSEIEK A AE++ A ++FRKWASK+CPDAKYMNV SD Q+RQLLFG
Sbjct: 230  KMETEGMLVDRGYLSEIEKAAIAERKLAADKFRKWASKYCPDAKYMNVNSDIQIRQLLFG 289

Query: 671  GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWP 730
            G  N     E+ P  + FKV N E V  EGKKT SK+R I L SI  DL  +M+T +GWP
Sbjct: 290  GIENRHKSGETWPHSKTFKVLNEESVATEGKKT-SKYRTIKLCSIVEDLKIDMFTPSGWP 348

Query: 731  SVGGDALKTLARNISAEYD-CVDGAHDLDD-SGCTEETEYKGAVASNNKIFATEQEAREA 788
            +V GDAL++LA  I  EY   +D   D D+ +  +E  +   +  +  + F   +  +EA
Sbjct: 349  TVSGDALRSLAGKIPTEYIYTIDDIQDDDEYTSGSENPDGNSSYGTAYEAFGGGKNGKEA 408

Query: 789  CDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQP 848
            C AI+ALCE+CSIDSLISNFILPLQG ++S   GR+HCSLNINTETGRLSAR PNLQNQP
Sbjct: 409  CHAIAALCEICSIDSLISNFILPLQGDHISCAEGRIHCSLNINTETGRLSARTPNLQNQP 468

Query: 849  ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            ALEKDRY+IRQAF+A PGNSLIVADYGQLELRILAHL NCKSML AFKAGGDFHSRTAMN
Sbjct: 469  ALEKDRYRIRQAFVAAPGNSLIVADYGQLELRILAHLTNCKSMLHAFKAGGDFHSRTAMN 528

Query: 909  MYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            MY HIR+AV+  +VLLEWH   G++KPPVPLLK                           
Sbjct: 529  MYQHIRDAVQEKKVLLEWHPQPGQEKPPVPLLK--------------------------- 561

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
                VSV+EA+ T+ LWY +R+EVL WQ+++KK +     V+TLLGR+R FP +      
Sbjct: 562  ----VSVKEARDTLKLWYRDRKEVLAWQKSQKKLASEKGEVYTLLGRSRHFPYLTQYGPG 617

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            QR HIERAAIN PVQGSAADVAMCAMLEI +N RLKELGW+LLLQV
Sbjct: 618  QRGHIERAAINAPVQGSAADVAMCAMLEIERNVRLKELGWRLLLQV 663


>gi|413917189|gb|AFW57121.1| hypothetical protein ZEAMMB73_274601 [Zea mays]
          Length = 647

 Score =  811 bits (2096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/675 (60%), Positives = 492/675 (72%), Gaps = 55/675 (8%)

Query: 375  EVAKIDVKQETPVDHGEVICFSIYSG----PEADFGNGKSCIWVDLLDGGGRDLLNEFAP 430
            +VA I+ K+ETPV HGEVICFSIYS       ADFGNGK+CIWVD+LDGG R +L EFAP
Sbjct: 4    QVANINAKEETPVGHGEVICFSIYSANSDVQAADFGNGKTCIWVDVLDGG-RGVLMEFAP 62

Query: 431  FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490
            FFED SIKKVWHNYSFD+HV+ENYG+K++GFHADTMH+ARLWDSSR+ +GGYSLE LT D
Sbjct: 63   FFEDSSIKKVWHNYSFDSHVIENYGIKIAGFHADTMHLARLWDSSRKIDGGYSLEGLTND 122

Query: 491  RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQRE 550
            R+VM        +D+ K        GK SMK IFGR+ ++KDGS GK+ ++ PV++LQRE
Sbjct: 123  RRVMD----TVPEDLPKP-------GKTSMKTIFGRKNIRKDGSEGKVVSVEPVKKLQRE 171

Query: 551  ERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
            +RELWI YS+ DS++TL+LY SLK KL    W LDG   P  +M+DFY++YW+PFG +LV
Sbjct: 172  DRELWICYSSLDSMSTLRLYDSLKSKLTTRRWILDG--CPRGTMYDFYEQYWRPFGALLV 229

Query: 611  KMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
            KMETEGMLVDR YLSEIEK A AE++ A ++FRKWASK+CPDAKYMNV SD Q+RQLLFG
Sbjct: 230  KMETEGMLVDRGYLSEIEKAAIAERKLAADKFRKWASKYCPDAKYMNVNSDIQIRQLLFG 289

Query: 671  GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWP 730
            G  N     E+ P  + FKV N E V  EGKKT SK+R I L SI  DL  +M+T +GWP
Sbjct: 290  GIENRHKSGETWPHSKTFKVLNEESVATEGKKT-SKYRTIKLCSIVEDLKIDMFTPSGWP 348

Query: 731  SVGGDALKTLARNISAEYD-CVDGAHDLDD-SGCTEETEYKGAVASNNKIFATEQEAREA 788
            +V GDAL++LA  I  EY   +D   D D+ +  +E  +   +  +  + F   +  +EA
Sbjct: 349  TVSGDALRSLAGKIPTEYIYTIDDIQDDDEYTSGSENPDGNSSYGTAYEAFGGGKNGKEA 408

Query: 789  CDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQP 848
            C AI+ALCE+CSIDSLISNFILPLQG ++S   GR+HCSLNINTETGRLSAR PNLQNQP
Sbjct: 409  CHAIAALCEICSIDSLISNFILPLQGDHISCAEGRIHCSLNINTETGRLSARTPNLQNQP 468

Query: 849  ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            ALEKDRY+IRQAF+A PGNSLIVADYGQLELRILAHL NCKSML AFKAGGDFHSRTAMN
Sbjct: 469  ALEKDRYRIRQAFVAAPGNSLIVADYGQLELRILAHLTNCKSMLHAFKAGGDFHSRTAMN 528

Query: 909  MYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            MY HIR+AV+  +VLLEWH   G++KPPVPLLK                           
Sbjct: 529  MYQHIRDAVQEKKVLLEWHPQPGQEKPPVPLLK--------------------------- 561

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
                VSV+EA+ T+ LWY +R+EVL WQ+++KK +     V+TLLGR+R FP +      
Sbjct: 562  ----VSVKEARDTLKLWYRDRKEVLAWQKSQKKLASEKGEVYTLLGRSRHFPYLTQYGPG 617

Query: 1026 QRNHIERAAINTPVQ 1040
            QR HIERAAIN PVQ
Sbjct: 618  QRGHIERAAINAPVQ 632


>gi|356573597|ref|XP_003554944.1| PREDICTED: uncharacterized protein LOC100787569 [Glycine max]
          Length = 1521

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/581 (69%), Positives = 460/581 (79%), Gaps = 24/581 (4%)

Query: 417  LDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
            LDGGG+++L +FA FF D SIKKVWHNYSFD HV+ENYG KVSGFHADTMHMARLWDSSR
Sbjct: 783  LDGGGKEILEKFAEFFSDSSIKKVWHNYSFDCHVIENYGFKVSGFHADTMHMARLWDSSR 842

Query: 477  RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAG 536
              +GGYSLE LTGDR+VMS  +  ++KD+         +GK+SMK IF ++KLKKDGS G
Sbjct: 843  HLDGGYSLEGLTGDRRVMSRAQLNHEKDL---------IGKVSMKTIFSKKKLKKDGSEG 893

Query: 537  KISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
            K S IAPVEELQR+ER  WI YSA D+ +TLKLY+SLK  L +M WK DG PV GK+M+D
Sbjct: 894  KTSIIAPVEELQRDERIPWICYSALDASSTLKLYESLKSHLSDMPWKFDGVPVYGKTMYD 953

Query: 597  FYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
            FY EYW+PFGE+LV ME+EGMLVDR YL  IEKVA+ EQE AVNRFRKWA+++CPDA+YM
Sbjct: 954  FYNEYWRPFGELLVMMESEGMLVDRAYLESIEKVAKEEQEVAVNRFRKWATRYCPDAQYM 1013

Query: 657  NVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG 716
            NVGSD+QLRQLLFGG  N KD +++LP ERIFK+PN   VI EGKK P +F +I L S+G
Sbjct: 1014 NVGSDSQLRQLLFGGIVNRKDSNQTLPTERIFKIPNVNNVIEEGKKAPKRFCDIKLTSLG 1073

Query: 717  VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCV--DGAHDLDD-------SGCTEETE 767
             +L TEMYTATGWPSV G ALK LA +ISA+YD    D   DLDD       S       
Sbjct: 1074 YNLETEMYTATGWPSVSGHALKALAGSISADYDFFDEDCNLDLDDEDENPSQSEVAPVKI 1133

Query: 768  YKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS 827
             K A  +    F TE+E REAC AI+ALC+VCSI+SLISNFILPLQG N+SGK+ RVHCS
Sbjct: 1134 DKSAYGTAYAAFPTEEEGREACHAIAALCQVCSINSLISNFILPLQGHNISGKDLRVHCS 1193

Query: 828  LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA P NSLIVADYGQLELRILAHLA+
Sbjct: 1194 LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPKNSLIVADYGQLELRILAHLAD 1253

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASE 944
            CKSML+AF+AGGDFHSRTAMNMYPHIR A+E  +VLLEWH   GEDKPPVPLLKDAFASE
Sbjct: 1254 CKSMLEAFEAGGDFHSRTAMNMYPHIREALEKKEVLLEWHPQPGEDKPPVPLLKDAFASE 1313

Query: 945  RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNE 985
            RRKAKMLNFSIAY KTPVG     K+ ++ AK  ++   NE
Sbjct: 1314 RRKAKMLNFSIAYEKTPVGHG---KIYLKAAKNYLEKKTNE 1351



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 124/145 (85%), Gaps = 6/145 (4%)

Query: 844  LQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
            LQNQPALEKDRYKIRQAFIA P NSLIVADYGQLELRILAHLA+CKSML+AF+AGGDFHS
Sbjct: 1360 LQNQPALEKDRYKIRQAFIAAPKNSLIVADYGQLELRILAHLADCKSMLEAFEAGGDFHS 1419

Query: 904  RTAMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
            RTAMNMYPHIR A+E  +VLLEWH   GEDKPPVPLLKDAFASERRKAKMLNFSIAY KT
Sbjct: 1420 RTAMNMYPHIREALEKKEVLLEWHPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYEKT 1479

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNE 985
            PVG     K+ ++ AK  ++   NE
Sbjct: 1480 PVGHG---KIYLKAAKNYLEKKTNE 1501


>gi|50725504|dbj|BAD32974.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|50725832|dbj|BAD33362.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 551

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/554 (63%), Positives = 421/554 (75%), Gaps = 12/554 (2%)

Query: 520  MKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLE 579
            MK IFGR+K++KDGS GK  +I PVE+LQRE+RELWI YS+ DS++TLKLY+SLK KL  
Sbjct: 1    MKTIFGRKKVRKDGSEGKTISIEPVEKLQREDRELWICYSSLDSMSTLKLYESLKNKLEA 60

Query: 580  MSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAV 639
              W  D    P  +M+DFY+EYW+PFG +LVKMETEG+LVDR YLSEIEK A  E+E A 
Sbjct: 61   KEWIFDD--CPRGTMYDFYEEYWRPFGALLVKMETEGVLVDRAYLSEIEKAAVTERELAA 118

Query: 640  NRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAE 699
            ++FRKWASKHCPDAKYMNV SD Q+RQL FGG  N     E+ P  + FKVPN EG+  E
Sbjct: 119  DKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIENRNKRGETWPQSKTFKVPNDEGIATE 178

Query: 700  GKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDC-VDGAHDLD 758
            GKKTP K R I L +I  DL  +M+T TGWPSV GD L++LA  I  ++   +D   + D
Sbjct: 179  GKKTP-KSRTIKLFTIVEDLKIDMFTPTGWPSVSGDVLRSLAGKIPTDHIYKIDDGQEFD 237

Query: 759  DSGCT-----EETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQ 813
            + G +     ++ E      +  + F   ++ REAC AI+ALCEV SID LIS FI+PLQ
Sbjct: 238  EDGSSLELPEQDIEDTSPYGTAYEAFGGGKKGREACHAIAALCEVFSIDKLISGFIVPLQ 297

Query: 814  GSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            G  +S K GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIR AF+A PGN+LIVAD
Sbjct: 298  GDRISCKEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRHAFVAAPGNTLIVAD 357

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH---GED 930
            YGQLELRILAHL NCKSML+AFKAGGDFHSRTAMNMY H+R+AVE  +VLLEWH   G+D
Sbjct: 358  YGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPGQD 417

Query: 931  KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
            KPPVPLLKDAF +ERRKAKMLNFSIAYGKT VGL+ DWKVSV EA+ T+ LWY +R+EV 
Sbjct: 418  KPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVSVREARDTLKLWYRDRKEVS 477

Query: 991  TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
             WQ+ +K  +     V+TLLGR+R+FP +      Q+ H+ERAAIN PVQGSAADVAMCA
Sbjct: 478  AWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQKGHVERAAINAPVQGSAADVAMCA 537

Query: 1051 MLEISKNARLKELG 1064
            MLEI +NARLKELG
Sbjct: 538  MLEIERNARLKELG 551


>gi|281205135|gb|EFA79328.1| mitochondrial DNA polymerase A [Polysphondylium pallidum PN500]
          Length = 1411

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/730 (48%), Positives = 478/730 (65%), Gaps = 51/730 (6%)

Query: 344  NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
            NV VV++V  AK +V  L +   +L HACDTEV  +D+K+++P+ HG +ICFS+Y GP+ 
Sbjct: 681  NVTVVNDVEKAKAIVNQLLS-LTYLYHACDTEVVDLDLKKQSPIGHGRIICFSVYCGPDI 739

Query: 404  DFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHA 463
            DFG G S +WVD +   G ++L  F P+FE  SI KVWHNY FD H+  N+ + V GF  
Sbjct: 740  DFGTG-SRLWVDTMGEQGNEILEVFRPYFESESIYKVWHNYGFDRHIFYNHNIDVKGFGG 798

Query: 464  DTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDI 523
            DT+HMARLWD++R   GGYSLE L+              K++   +       K S+KD+
Sbjct: 799  DTLHMARLWDAARNGRGGYSLEGLS--------------KELLDNH-------KTSIKDL 837

Query: 524  FGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTLKLYKSLKKKLLEMS 581
            FG+ K+K DG  GK   + P+E +QR  + L  WI YS+ D+  T  L ++L+ KL  M 
Sbjct: 838  FGKNKIKADGLPGKDIIVPPLEVIQRHPKHLETWIEYSSLDAELTWNLRENLQAKLQNMV 897

Query: 582  WKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNR 641
            W  D       +M+DFY   W+PFG +L  ME  GM VD E+L  +E VA  + +  ++ 
Sbjct: 898  WMND------TNMWDFYHNLWRPFGHLLTDMERRGMKVDIEHLKTVEGVATKDIQDNMDA 951

Query: 642  FRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGK 701
            F++WA K+CP+AKYMN  SD Q++QLLF    N K   E +P+ER F+  NTEG I EGK
Sbjct: 952  FQQWAVKYCPNAKYMNPSSDAQIQQLLFAPTKNVKT-KEEMPLEREFETENTEGFIEEGK 1010

Query: 702  KTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSG 761
            K P K R   L  +G  LP   +TA+GWP+V   +L+ LA N S         H  D S 
Sbjct: 1011 KKPKKMRPFLLSGLG--LPFGSHTASGWPAVDSASLRDLAGNPSKGKYGKIFNHFKDKS- 1067

Query: 762  CTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKN 821
               E + KG           EQE  EA  AI++L E+ S+ +L+S+FI+PLQ   +   N
Sbjct: 1068 ---EDKEKG-----------EQEGIEASKAITSLLEIGSVGTLLSSFIIPLQ--KLCDSN 1111

Query: 822  GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
             RVH S+N+NTETGRLS++RPNLQNQPALEKDRYKIR+AF   PGN+L+VADYGQLELR+
Sbjct: 1112 HRVHTSVNVNTETGRLSSKRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVADYGQLELRL 1171

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+ NC+SM++AFK GGDFHSRTAM MYPH++ AV+ G VLLEW G+ +PP PLLKD+F
Sbjct: 1172 LAHITNCRSMINAFKIGGDFHSRTAMGMYPHVKEAVDRGDVLLEWDGDGEPPKPLLKDSF 1231

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
             +ERRKAK LNFSIAYGKT  GL++DW V+++EA++T+D WY++R EVL WQ    + + 
Sbjct: 1232 GAERRKAKTLNFSIAYGKTAHGLSKDWGVTLKEAQETLDRWYSDRPEVLLWQRKTIQIAN 1291

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
                  TL+GR R  P I +  +  + H ERA+INTP+QG AAD+ M AML I ++ RLK
Sbjct: 1292 THKWTRTLMGRYRMLPDIDNPAKGMKGHSERASINTPLQGGAADIVMKAMLMIEEDKRLK 1351

Query: 1062 ELGWKLLLQV 1071
            ELG++L++Q+
Sbjct: 1352 ELGFQLIMQI 1361


>gi|115460848|ref|NP_001054024.1| Os04g0637400 [Oryza sativa Japonica Group]
 gi|113565595|dbj|BAF15938.1| Os04g0637400, partial [Oryza sativa Japonica Group]
          Length = 560

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/511 (67%), Positives = 406/511 (79%), Gaps = 10/511 (1%)

Query: 568  KLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI 627
            +LY+SLK KL +  W  DG   P  SM+DFY+EYW+PFG +LVKMET GMLVDR YLSEI
Sbjct: 1    RLYESLKSKLEKKHWTFDG--CPRGSMYDFYEEYWRPFGALLVKMETAGMLVDRGYLSEI 58

Query: 628  EKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERI 687
            EKVA A+++ A ++FRKWASK+CPDAKYMNV SDTQ+RQL FGG  N     E+LP  R 
Sbjct: 59   EKVAVAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIENRCKPGETLPKSRT 118

Query: 688  FKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAE 747
             KVPN   +IAEGKKTP K+  I L SI  DL T+++TA+GWPSV GDAL++LA  +  +
Sbjct: 119  IKVPNDGSLIAEGKKTP-KYCTIELFSIVEDLKTDLFTASGWPSVSGDALRSLAGKLPTD 177

Query: 748  YDCVDGAHDLDDSGCTEETEY----KGAVASNNKIFATEQEAREACDAISALCEVCSIDS 803
                    + DDSG +E +E+      +  +  + F   ++ +EAC AI+ALCE+CSIDS
Sbjct: 178  LVYTTDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHAIAALCEICSIDS 237

Query: 804  LISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            LISNFILPLQG+++S   GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIRQAF+A
Sbjct: 238  LISNFILPLQGNHISCDEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAFVA 297

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
             PGNSLIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHSRTAMNMY HIR+AVE  +VL
Sbjct: 298  APGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVL 357

Query: 924  LEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVD 980
            LEWH   G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKTPVGLARDWKVSV+EAK T+ 
Sbjct: 358  LEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLK 417

Query: 981  LWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQ 1040
            LWY +R+EVL WQ  +K+ ++    V+TLLGR+RRFP +   T  QR HIERAAIN PVQ
Sbjct: 418  LWYRDRKEVLAWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQ 477

Query: 1041 GSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            GSAADVAMCAMLEI +NARLKELGW+LLLQV
Sbjct: 478  GSAADVAMCAMLEIDRNARLKELGWRLLLQV 508


>gi|308807921|ref|XP_003081271.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
 gi|116059733|emb|CAL55440.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
          Length = 968

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/778 (49%), Positives = 504/778 (64%), Gaps = 42/778 (5%)

Query: 321  KASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKY----KHLVHACDTEV 376
            +A  NE+ E    LR +       V  V+ V  A++V+ +L +      + L HACDTEV
Sbjct: 153  EAQVNEDEEIATGLRDE-------VQTVETVEEARRVLKILLDNAGTAKRPLYHACDTEV 205

Query: 377  AKIDVKQETPVDHGEVICFSIYSGPEADFG----NGKSCIWVDLLDGGGRDLLNEFAPFF 432
            A IDV  +TPV HG+V CFS++ GP+ +F     + +S +WVD L GG   +   F  +F
Sbjct: 206  AYIDVSDQTPVGHGQVTCFSVFCGPDVNFAPEGESKRSLLWVDTLRGG-EGVWEVFKEYF 264

Query: 433  EDPSIKKVWHNYSFDNHVLENY-GLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDR 491
            E+P++KKVWHNYSFD HV+EN+ G+K++GF ADTMHMARLW+S+R  +GGYSLEAL+   
Sbjct: 265  ENPNVKKVWHNYSFDRHVVENHHGIKLAGFAADTMHMARLWNSNRGLDGGYSLEALSSSA 324

Query: 492  KVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR-- 549
            +VMS+  +        G   E    K  MK IFG+ KLKKDG+ GK   + PVEE+Q   
Sbjct: 325  EVMSDCAEML------GAGAEMMRAKRGMKKIFGKPKLKKDGTPGKTIILPPVEEIQEDV 378

Query: 550  EERELWISYSAFDSINTLKLYKSLKKKLLEMSWK----LDGKPVPGK--SMFDFYQEYWQ 603
            E+R+ WI YSA D+  T  L +SL+ KL  MS +    L  KP   K  +++DFY  Y  
Sbjct: 379  EQRDKWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYRKCVTLWDFYTFYLA 438

Query: 604  PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
             FG +L +ME  G+LVD+E+L+  EK+A  ++  A   FR WAS  C  AK MNVGS  Q
Sbjct: 439  EFGNLLTQMERNGLLVDKEHLANAEKMALEDKRVAEEYFRTWASAKCEGAKLMNVGSGLQ 498

Query: 664  LRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVI--AEGK--KTPSKFRNITLRSIGVD- 718
            +RQLLF G  N + D   + + R F   +TE +   A G+  K P K   + L  I V  
Sbjct: 499  IRQLLFAGAKNKRRDKPGVELVREFTQESTEWLAWDAAGREGKAPKKTMKVALHGITVKP 558

Query: 719  LPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKI 778
            +P + +TATG P+V    L++LA    A    +D    L D   +EE   K A       
Sbjct: 559  IPVQTFTATGLPAVSSVVLRSLAGKPGAARAIMDAWDTLSDEEKSEEA-LKKACGGAFDA 617

Query: 779  FATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLS 838
            F   QE  +AC AI AL +V +ID+L+SNFI+PLQG ++ G  GRVH +LNINTETGRLS
Sbjct: 618  FGGGQEGVQACAAIDALNDVAAIDTLLSNFIIPLQGDDIRGPEGRVHGALNINTETGRLS 677

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            ARRP+LQNQPALEKDRY IR+AF A PGN L+VADYGQLELR+LAH+A CKSM +AF+AG
Sbjct: 678  ARRPSLQNQPALEKDRYGIRKAFTAGPGNVLVVADYGQLELRLLAHMAGCKSMQEAFEAG 737

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEW----HGEDKPPVP-LLKDAFASERRKAKMLNF 953
            GDFHSRTA+ MY +I++A+  G+V+LE+     G D+   P L+KD FASERRKAK+LNF
Sbjct: 738  GDFHSRTALGMYSNIKDAIAKGEVVLEYGEQEEGVDEKDRPALVKDVFASERRKAKVLNF 797

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
            SIAYGKT  GL++DW  S+EEA  TV+LWY++R EV  WQE +KK +   N V TLLGR 
Sbjct: 798  SIAYGKTAHGLSKDWGTSLEEAANTVELWYSDRPEVRDWQEVQKKMAVEKNLVRTLLGRV 857

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R  P   S   + ++H  RA+INTP+QG AAD+AM AML+I +  RLKELG+KLL+Q+
Sbjct: 858  RNLPDASSKNEAFKSHALRASINTPIQGGAADIAMLAMLQIQRCPRLKELGYKLLMQI 915


>gi|330843207|ref|XP_003293552.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
 gi|325076115|gb|EGC29930.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
          Length = 1334

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/733 (48%), Positives = 474/733 (64%), Gaps = 54/733 (7%)

Query: 344  NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
            NV +V +V  AKK V  L  ++K+  HACDTE   ID+K+ +P+ HG +ICFSIY GP+ 
Sbjct: 601  NVTMVRDVETAKKAVATLM-QHKNKYHACDTETIAIDLKKVSPIGHGRMICFSIYCGPDV 659

Query: 404  DFGNGKSCIWVDLLDG-GGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
             F +G + +WVD++D   G  +L EF  +FED SI KVWHNY+FD H+  N+ + V GF 
Sbjct: 660  KFFDGNTRLWVDVMDDINGEAVLQEFKEYFEDESILKVWHNYAFDRHIFYNHNINVKGFG 719

Query: 463  ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
             DT+HMARLW+++R+  GGYSLEAL   R+++++                    K  +KD
Sbjct: 720  GDTLHMARLWNAARQNSGGYSLEALC--RELLNK-------------------TKTPIKD 758

Query: 523  IFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTLKLYKSLKKKLLEM 580
            +FG++K+K +G AGK  TI P++ +QR+ R +  WI YS+ DS  T  L ++L  KL +M
Sbjct: 759  LFGQKKIKANGEAGKAITIPPLQRIQRDRRSILDWIEYSSLDSELTWSLRENLHMKLEDM 818

Query: 581  SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
             W          +M+DFY   W+PFG +L +ME  GM +D +YL  +E  A  + E   N
Sbjct: 819  VW------TQNSTMWDFYYLNWRPFGHLLTEMEQRGMKIDIDYLKNLESTAFKDMEENRN 872

Query: 641  RFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
            RF  WASKH   AKYMN  SD Q++QLLF    N K   E +P  + F+  N EG+I EG
Sbjct: 873  RFISWASKHSEGAKYMNPDSDAQIQQLLFAPVTNKKT-KEEMPKSKDFETENVEGIIEEG 931

Query: 701  KKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHD--LD 758
            +  P K  N++    G+  P+   T +GWPSV   AL+ LA   S E      A+   +D
Sbjct: 932  RTKPKK--NMSFILDGLGFPSNSVTTSGWPSVDASALRELAGK-SPENGKFGTAYQFFVD 988

Query: 759  DSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVS 818
             S   EE E  G               +EAC AI++L E+ +I +L++ FI+PLQ   ++
Sbjct: 989  KSENKEEGEALG---------------KEACLAIASLLELGTIGTLLNTFIIPLQ--KLA 1031

Query: 819  GKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
             KN R+H S+N+NTETGRLS+R+PNLQNQPALEKDRYKIR+AF   PGN+LIVADYGQLE
Sbjct: 1032 DKNSRLHTSVNVNTETGRLSSRKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADYGQLE 1091

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+ NCKSM+ AFK GGDFHSRTAM MYPH++ AV+ G+VLLEW G+ +PP PLLK
Sbjct: 1092 LRLLAHITNCKSMISAFKVGGDFHSRTAMGMYPHVKEAVDKGEVLLEWDGDGEPPKPLLK 1151

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            + FASERRKAK LNFSIAYGKT  GL+ DW V+++EA++T++ WY +R EVL WQ     
Sbjct: 1152 NIFASERRKAKTLNFSIAYGKTAHGLSTDWGVTLKEAQETLNRWYEDRPEVLVWQRKTIA 1211

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +       TL+GR R  P I +  +  +NH ERA+INTP+QG AAD+ M AML I  N 
Sbjct: 1212 TAHSHKWTRTLMGRYRHLPDIDNSAKGMKNHAERASINTPLQGGAADIVMKAMLIIEDNK 1271

Query: 1059 RLKELGWKLLLQV 1071
            R+KELG+KL++Q+
Sbjct: 1272 RIKELGYKLIMQI 1284


>gi|384253732|gb|EIE27206.1| DNA/RNA polymerase [Coccomyxa subellipsoidea C-169]
          Length = 924

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/787 (48%), Positives = 488/787 (62%), Gaps = 52/787 (6%)

Query: 333  ILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKH---LVHACDTEVAKIDVKQETPVDH 389
            +L   ++     V VVD +  A +    L   +     +  ACDTEV+ IDV +E+P  H
Sbjct: 90   LLEGDISVVPREVFVVDTLEKAHQAAARLRALHAANPSMFFACDTEVSHIDVTKESPCGH 149

Query: 390  GEVICFSIYSGPEADFGNG------KSCIWVDLLDGGGRDLLNE-FAPFFEDPSIKKVWH 442
            G VICFS+Y G + DFG        ++ +WVD +  G  D + E F  FFED S+ KVWH
Sbjct: 150  GTVICFSVYCGEDIDFGGSGDGDIRQNQLWVDTM--GTVDAIWEAFRDFFEDKSVLKVWH 207

Query: 443  NYSFDNHVLENY-----GLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSED 497
            NYSFD HVL N       ++  GFHADTMHMARLWDSSRR +G YSLEAL+GD  V    
Sbjct: 208  NYSFDRHVLANVFVGGRPIEARGFHADTMHMARLWDSSRRGKG-YSLEALSGDEIVPGVH 266

Query: 498  KKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGK------------ISTIAPVE 545
            ++        GN       K  MK++F   K+KKDG+  K            I  + P+E
Sbjct: 267  RENVLVPRRLGNGSSP-SAKTGMKELFAEPKVKKDGTLSKACLYTPFLSRVQIKELPPME 325

Query: 546  ELQR--EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLD---GKPVPGKSMFDFYQE 600
            ELQ     R  WI YSA D+  T  L   L+++L  M        G    G +++D YQ+
Sbjct: 326  ELQACVRRRGKWIRYSALDAKATHDLALGLQRQLAAMPCPPQLYLGMDPAGYTLWDLYQD 385

Query: 601  YWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
            YW+PFGE+L  ME EGM+VDRE+L   E+ A  +QE A  RFR+W     PDA+YMN+ S
Sbjct: 386  YWKPFGELLTDMEKEGMMVDREHLRAAEEKAVEDQERAKKRFREWVRTKVPDAEYMNICS 445

Query: 661  DTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSI-GVD- 718
              Q+RQLLF G PN K D   L ++R FK PN  G I EGKK   K  +I +  + GVD 
Sbjct: 446  GPQIRQLLFPGVPNMKADKGRLELQRTFKAPNVLGRIEEGKKIAKKQMDIVIHGLWGVDA 505

Query: 719  ---LPTEMYTATGWPSVGGDALKTLARNISAEYDCV---DGAHDLDDSGCTE-ETEYKGA 771
               L  E++TA+GWP+V    L+ LA    A    +     A  L D    E E   K A
Sbjct: 506  VSPLVPEVFTASGWPAVSTPVLRGLAGKPGAAKRALLELAAARVLADMQSLEYEANMKEA 565

Query: 772  VASNN----KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKN-GRVHC 826
             A        +F   +E   AC A+ ALCEV ++D+L+SNFI PLQG  ++     RVHC
Sbjct: 566  AACGYGKLYAVFGGGREGLHACAAVDALCEVSAVDTLLSNFIRPLQGGAIATPVLHRVHC 625

Query: 827  SLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLA 886
            SLNINTETGRLSARRPNLQNQPALEKDRYK+R+AF A PG +L+VADYGQLELR+LAH+A
Sbjct: 626  SLNINTETGRLSARRPNLQNQPALEKDRYKVRKAFRAEPGKTLVVADYGQLELRLLAHMA 685

Query: 887  NCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED--KPPVPLLKDAFASE 944
            +C+SML AF+ GGDFHSRTA+ MY HI+ A++ G+ LLEW   +  K PVPLLKD F SE
Sbjct: 686  DCESMLRAFRLGGDFHSRTALGMYDHIKAAIDRGECLLEWDSVEGQKAPVPLLKDMFGSE 745

Query: 945  RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDN 1004
            RRKAK+LNFSIAYGKT  GL+RDW  S+EEAK TV+ WY++R EV  WQ+ +++ + ++ 
Sbjct: 746  RRKAKVLNFSIAYGKTAHGLSRDWGTSLEEAKDTVERWYSDRPEVEQWQKEQRRLAEMEG 805

Query: 1005 HVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELG 1064
            +V T+LGR R+ P  +S  +  + H  RAAINTP+QGSAADVA  AML I++   LKE+G
Sbjct: 806  YVCTILGRRRQLPDAQSANQKAKGHALRAAINTPIQGSAADVATAAMLSIARCPELKEMG 865

Query: 1065 WKLLLQV 1071
            W +LLQV
Sbjct: 866  WTMLLQV 872


>gi|412990863|emb|CCO18235.1| predicted protein [Bathycoccus prasinos]
          Length = 1016

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/789 (47%), Positives = 499/789 (63%), Gaps = 46/789 (5%)

Query: 316  TGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKY----KHLVHA 371
            TG    AS +E++E L             V  V  V  AK  V +L        +   HA
Sbjct: 184  TGDEDGASVDESNETL-----IPTGLREEVFCVTTVEDAKHAVAILNENLGTDEEPKYHA 238

Query: 372  CDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFG----NGKSCIWVDLLDGGG----RD 423
             DTEV+ IDV  +TPV HG VICFS+++GP+ +F     + KS +WVDLLD       ++
Sbjct: 239  LDTEVSHIDVTCQTPVGHGNVICFSVFAGPDVNFAKPGESKKSLLWVDLLDKDNVRFNQE 298

Query: 424  LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
            + + F  + E+   KKVWHNYSFD HV+EN+G+++ GF ADTMHMARLW+++R+ +GGYS
Sbjct: 299  IFDVFTSYLENEKAKKVWHNYSFDRHVVENHGIQLGGFAADTMHMARLWNTNRKLDGGYS 358

Query: 484  LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFM-GKISMKDIFGRRKLKKDGSAGKISTIA 542
            LEALT D +VM++  +         +  E  M  K+ MK IFG+ KLKKDG+ GK   + 
Sbjct: 359  LEALTSDAEVMADCGEML-------SASETMMRAKLGMKKIFGKPKLKKDGTPGKTIELP 411

Query: 543  PVEELQR--EERELWISYSAFDSINTLKLYKSLKKKLLEMSWK----LDGKPVPGKS--M 594
            P+E +Q   + R+ WI Y+A D++ T  L +SL+ KL  +S      L GKP   KS  +
Sbjct: 412  PMEVIQTTDDSRDRWIEYAALDAMATWFLRESLEAKLRGISCDACPILSGKPQFKKSTTL 471

Query: 595  FDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAK 654
            +DFY  Y +PFG +L +ME  GM VD E+L+  E++A ++++ A   FR+WA+  C DAK
Sbjct: 472  WDFYTRYTRPFGNLLTQMERNGMRVDLEHLANAEQLAMSDKKVAEEYFREWAASKCEDAK 531

Query: 655  YMNVGSDTQLRQLLFGGKPNSK-DDSESLPIERIFKVPNTEGVIAEGK----KTPSKFRN 709
            YMNVGS  Q+RQLLF G  N + +D   +   R F   + E +  + K    K P K   
Sbjct: 532  YMNVGSGLQIRQLLFAGARNKRGNDKPGVEKTREFTQESQEWLEWDAKGREGKAPKKTSK 591

Query: 710  ITLRSIGV-DLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEY 768
            ITL  I    LP   YTATG P+V    L+ LA    A  +  D    L ++    E   
Sbjct: 592  ITLHGITKRPLPVLTYTATGLPAVSSVVLRQLAGKPGAAREICDNWDSLPEADKKNEKLS 651

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K    +  + F    E   AC AI AL ++ ++D+L+SNFI+PLQG ++ G  GRVH ++
Sbjct: 652  K-ICGTAFEAFGRGFEGARACAAIDALNDLAAVDTLLSNFIIPLQGDDIRGPEGRVHGAV 710

Query: 829  NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
            NINTETGRLSARRP+LQNQPALEKDRY IR+AF A  G +LIV DYGQLELR+LAH+A+C
Sbjct: 711  NINTETGRLSARRPSLQNQPALEKDRYGIRRAFTAEEGKTLIVCDYGQLELRLLAHMADC 770

Query: 889  KSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW------HGEDKPPVPLLKDAFA 942
            KSM +AF AGGDFHSRTA+ MYP+IR A++ G+ LLE+        ED P  PLLKD FA
Sbjct: 771  KSMKEAFIAGGDFHSRTALGMYPNIREAMDKGECLLEYGPKREGEDEDAPQPPLLKDMFA 830

Query: 943  SERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRI 1002
            SERRKAK+LNFSIAYGKT  GLA+D+   +EEA KTVDLWY++R EV +WQE ++K +  
Sbjct: 831  SERRKAKVLNFSIAYGKTAHGLAKDFGTDLEEANKTVDLWYSDRPEVRSWQEVQRKHAEK 890

Query: 1003 DNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKE 1062
              HV TLLGR R  P  KS     ++H  RAAINTP+QG AAD+AM AML+I +  RLK+
Sbjct: 891  HGHVRTLLGRTRSLPDAKSRNEQFKSHALRAAINTPIQGGAADIAMLAMLKIQRCPRLKQ 950

Query: 1063 LGWKLLLQV 1071
            LG+KLL+Q+
Sbjct: 951  LGYKLLMQI 959


>gi|145350384|ref|XP_001419587.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579819|gb|ABO97880.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 824

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/755 (49%), Positives = 493/755 (65%), Gaps = 37/755 (4%)

Query: 345  VMVVDNVSAAKKVVWMLTNKY----KHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSG 400
            V  V+ V  A++V+ +L +      + + HACDTEVA I V  +TPV HG+V CFS+Y G
Sbjct: 26   VQTVETVEEARRVLKILLDNAGTEDQPMYHACDTEVAYISVADQTPVGHGQVTCFSVYVG 85

Query: 401  PEADFG----NGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY-G 455
            P+ +F     + +S +WVD L GG   +   F  +FE+ ++KKVWHNYSFD HV+EN+ G
Sbjct: 86   PDVNFAPEGESKRSLLWVDTLRGGD-GVWEVFKEYFENANVKKVWHNYSFDRHVVENHHG 144

Query: 456  LKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFM 515
            +K++GF ADTMHMARLW+S+R+ +GGYSLEAL+     MSE  +        G   E   
Sbjct: 145  IKLAGFAADTMHMARLWNSNRKLDGGYSLEALSSSADAMSECAEML------GAGAEMMR 198

Query: 516  GKISMKDIFGRRKLKKDGSAGKISTIAPVEELQ--REERELWISYSAFDSINTLKLYKSL 573
             K  MK IFG+ KLKKDG+ GK   + P+EE+Q  R+ R+ WI YSA D+  T  L +SL
Sbjct: 199  AKRGMKKIFGKPKLKKDGTPGKTMILPPIEEIQEARDSRDRWIEYSALDAQATWFLRESL 258

Query: 574  KKKLLEMSWK----LDGKPVPGK--SMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI 627
            + KL  MS +    L  KP   K  +++DFY  Y   FG +L +ME  G+LVD+ +L+  
Sbjct: 259  EAKLRGMSCEACPILASKPGYRKCVTLWDFYTFYLAEFGNLLTQMERNGLLVDKAHLAHA 318

Query: 628  EKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERI 687
            EK+A  ++  A + FR WA+  C  A+ MNVGS  Q+RQLLF G  N + D   + + R 
Sbjct: 319  EKMAHEDKRVAEDYFRNWAASKCEGARIMNVGSGLQVRQLLFAGAKNKRRDKPGVELTRE 378

Query: 688  FKVPNTEGVI--AEGK--KTPSKFRNITLRSIGVD-LPTEMYTATGWPSVGGDALKTLAR 742
            F   ++E +   A G+  K P K   + L  I V  +  + +TATG P+V    L+ LA 
Sbjct: 379  FTQESSEWIAWDAAGREGKAPKKTMKVALHGITVKPIQVQTFTATGLPAVSSVVLRALAG 438

Query: 743  NISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSID 802
               A    +D    L D+  TE+   K A  +  + F   +E  +AC AI AL +V +ID
Sbjct: 439  KPGAARAIMDTWDSLADAEKTEDV-LKKACGTAFEAFGGGKEGVQACAAIDALNDVAAID 497

Query: 803  SLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFI 862
            +L+SNFI+PLQG ++ G  GRVH +LNINTETGRLSARRP+LQNQPALEKDRY IR+AF 
Sbjct: 498  TLLSNFIIPLQGDDIRGPEGRVHGALNINTETGRLSARRPSLQNQPALEKDRYGIRKAFT 557

Query: 863  AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQV 922
            A PGN L+VADYGQLELR+LAH+A+CKSM +AF+AGGDFHSRTA+ MY +I+ A++ G+V
Sbjct: 558  AGPGNILVVADYGQLELRLLAHMADCKSMQEAFEAGGDFHSRTALGMYSNIKEAIDKGEV 617

Query: 923  LLEWHGEDKPPV------PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAK 976
            +LE +GE +  V       L+KD FASERRKAK+LNFSIAYGKT  GLA+DW  S+EEA 
Sbjct: 618  VLE-YGEQEETVDEKDRPALVKDVFASERRKAKVLNFSIAYGKTAHGLAKDWGTSLEEAA 676

Query: 977  KTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAIN 1036
             TV+LWY +R EV  WQE +KK +   N V TLLGR R  P   S   + ++H  RA+IN
Sbjct: 677  NTVELWYADRPEVREWQEVQKKMAVEKNLVRTLLGRVRNLPDASSKNEAFKSHALRASIN 736

Query: 1037 TPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            TP+QG AAD+AM AML+I +  RLKELG+KLL+Q+
Sbjct: 737  TPIQGGAADIAMLAMLQIQRCPRLKELGYKLLMQI 771


>gi|255088559|ref|XP_002506202.1| predicted protein [Micromonas sp. RCC299]
 gi|226521473|gb|ACO67460.1| predicted protein [Micromonas sp. RCC299]
          Length = 972

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/841 (46%), Positives = 512/841 (60%), Gaps = 79/841 (9%)

Query: 294  PPKL-------VSFKRSNQKNPKNDAAEGT------GQNKKASENENSEKLEILRSKLAS 340
            PPK+       +S  ++N       AA G         +K+A+ +   +      S LA 
Sbjct: 95   PPKILRFNGDKISLHKTNGNGNGRRAASGVYELDVDADDKRAASSATDDDKP---SNLAG 151

Query: 341  FYSNVMVVDNVSAAKKVVWMLT----NKYKHLVHACDTEVAKIDVKQETPVDHGEVICFS 396
                V +V++ + A++V+ +L     +  + + HA DTEV+ IDV ++ PV HG V CFS
Sbjct: 152  LIDEVAIVEDAAEARRVLKILMANTGDADRPVYHAVDTEVSHIDVSEQCPVGHGRVTCFS 211

Query: 397  IYSGPEADFG--------------NG---------KSCIWVDLLDGGGRDLLNEFAPFFE 433
            +Y GP+ DFG              NG         K+ +WVD +  G       F P+FE
Sbjct: 212  VYCGPDVDFGASQSGGNGSKNSRKNGSTGPAGGKPKTLLWVDTMSLGDEGW-KIFKPYFE 270

Query: 434  DPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKV 493
             P +KKVWHNY FD HV+EN+G+K++GF ADTMHMARLW+S+R+ EGGYSLEAL+ D KV
Sbjct: 271  SPDVKKVWHNYGFDRHVIENHGVKLAGFAADTMHMARLWNSNRKLEGGYSLEALSSDPKV 330

Query: 494  MSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EE 551
            MS+  + Y +       +E    K  MK IFG+ KLKKDG+ GK   + P++E+Q   E+
Sbjct: 331  MSDAGEMYSE-----AGEELIRSKRGMKKIFGKAKLKKDGTPGKTVILPPIDEIQTDPEQ 385

Query: 552  RELWISYSAFDSINTLKLYKSLKKKL----LEMSWKLDGKPVPGK--SMFDFYQEYWQPF 605
            RE WI YSA D+  T  L +SL+ KL     E    L  KP   +  +++DFY  Y + F
Sbjct: 386  RETWIEYSALDAQATWFLRESLEAKLRGIDCEACPVLSKKPTFRRCSNLWDFYVHYLREF 445

Query: 606  GEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLR 665
            GE+L  ME+ GM VD+ +L++ EK A  +++ A + FR WA+  CP A++MNVGS  Q+R
Sbjct: 446  GEVLTDMESNGMYVDKAHLADAEKRALEDKKVAEDYFRAWATGKCPAAEHMNVGSGIQVR 505

Query: 666  QLLFGGKPNSKDDSESLPIERIFKVPNTE-------GVIAEGKKTPSKF--RNITLRSIG 716
            QLLF G PN + D   +   R F + + E       G   +  K  +KF    IT R   
Sbjct: 506  QLLFAGAPNKRRDKPGVEKTREFAMVSKEWTEWDENGREGKAPKKAAKFELHGITKR--- 562

Query: 717  VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNN 776
             +L   +YT TG P+V    L+ LA    A  + VD    L D    +E   K    S  
Sbjct: 563  -NLQPPVYTTTGLPAVSSVVLRALAGKPGAARELVDNWDALADDQKKDEALAK-KCGSAF 620

Query: 777  KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGR 836
              F    +  EAC AI AL +V +ID+L+SNFI+PLQ  N+ G NGRVH +LNINTETGR
Sbjct: 621  LAFGGGFDGVEACAAIDALNDVAAIDTLLSNFIIPLQSDNLRGFNGRVHAALNINTETGR 680

Query: 837  LSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
            LSARRP+LQNQPALEKDRY IR+AF A PGN LIVADYGQLELR+LAH+A C SM +AF+
Sbjct: 681  LSARRPSLQNQPALEKDRYGIRKAFSAEPGNILIVADYGQLELRLLAHMAGCVSMREAFE 740

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEW------HGEDKPPVPLLKDAFASERRKAKM 950
            AGGDFHSRTAM MY  IR A+E G+ LLE+       G +KP   L+KD FASERRKAK+
Sbjct: 741  AGGDFHSRTAMGMYKEIREAMEQGKCLLEYGDIDDDAGGEKP--ALVKDMFASERRKAKV 798

Query: 951  LNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLL 1010
            LNFSIAYGKT  GLA+D+ VS  EA++TVDLWY++R EV  WQ  + K++     V+TLL
Sbjct: 799  LNFSIAYGKTAHGLAKDFGVSTREAEETVDLWYSDRPEVREWQAVQHKKAAEKGKVNTLL 858

Query: 1011 GRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQ 1070
            GR R  P   S    +R H  RA+INTP+QG AAD+AM AM++I +  RL+ELG+KLL+Q
Sbjct: 859  GRHRNLPEASSSDEMRRGHALRASINTPIQGGAADIAMLAMIQIHRCPRLRELGFKLLMQ 918

Query: 1071 V 1071
            +
Sbjct: 919  I 919


>gi|66828405|ref|XP_647557.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
 gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A [Dictyostelium discoideum]
 gi|60475250|gb|EAL73185.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
          Length = 1369

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/737 (47%), Positives = 473/737 (64%), Gaps = 57/737 (7%)

Query: 344  NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
            NV +V +V  A+ VV +L  K K   HACDTEV  ID+K+ +P+ HG++ICFSIY GP+ 
Sbjct: 631  NVTMVRDVETARMVVSILM-KQKDRFHACDTEVIDIDLKKFSPIGHGKMICFSIYCGPQV 689

Query: 404  DFGNGKSCIWVDLLDG-GGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
             F +G S +WVD++D   G ++L  F  +FED SI KVWHNY+FD H+  N+G+ V GF 
Sbjct: 690  KFHDGNSRVWVDVMDDIEGDEILQVFKEYFEDESILKVWHNYAFDRHIFYNHGINVKGFG 749

Query: 463  ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
             DT+HMARLW++SR   GGYSLEAL+         K+   K             K+ +KD
Sbjct: 750  GDTLHMARLWNASRMNSGGYSLEALS---------KELLNK------------PKVPIKD 788

Query: 523  IFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTLKLYKSLKKKLLEM 580
            +FG RK+K DG  GK   I P+E +QR+ + +  WI YS+ DS  T  L +++  KL +M
Sbjct: 789  LFGTRKIKADGEEGKSIVIPPLERIQRDSKFILNWIEYSSLDSELTWLLRENIHIKLRDM 848

Query: 581  SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
             W        G +M+DFY   W+PFG +L +ME  G+ VD +YL  +E+ A  + E    
Sbjct: 849  EWN------QGTTMWDFYYLMWRPFGHLLTEMEQRGLKVDIDYLKSLEEKAYTDMEENRK 902

Query: 641  RFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
             F  WA  H PDA+ MN  SD Q++QL F    N K   ESLP+E+ F+  N +G I  G
Sbjct: 903  VFLNWAKTHSPDAENMNPVSDAQIQQLFFAPVQNKKT-KESLPLEKDFECDNLDGTIEVG 961

Query: 701  KKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDS 760
            K  P K +   LR IG++  ++  T  GWPSV   +L+ LA       + +DG +     
Sbjct: 962  KTKPKKKKTFYLRGIGME--SKSLTTNGWPSVDSSSLRELAGK-----NPIDGKYG---- 1010

Query: 761  GCTEETEYKGAVASNNKIFAT------EQEAREACDAISALCEVCSIDSLISNFILPLQG 814
                 + Y   V S N+ +        EQ  REA  AI+AL E+ SI +L++ FI+PLQ 
Sbjct: 1011 -----SAYDFFVKSKNECYKDLPIEEREQMGREASIAINALLELGSIGTLLNTFIIPLQ- 1064

Query: 815  SNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
              ++  N R+H S+N+NTETGRLS+++PNLQNQPALEKDRYKIR+AF   PGN+LIVADY
Sbjct: 1065 -KLADSNSRLHTSINVNTETGRLSSKKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADY 1123

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
            GQLELR+LAH+ NCKSM+ AF+ GGDFHSRTAM MYPH++ A++ G+VLLEW GE +PP 
Sbjct: 1124 GQLELRLLAHITNCKSMITAFQVGGDFHSRTAMGMYPHVKEAIDRGEVLLEWDGEGEPPK 1183

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PLLK+ +ASERRKAK LNFSIAYGKT  GL++DW V++ EAK+T++ WY +R EVL WQ 
Sbjct: 1184 PLLKNVYASERRKAKTLNFSIAYGKTAHGLSQDWGVTLNEAKETLNRWYEDRPEVLVWQR 1243

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + +       TL+GR R+ P IK   +  + H ERA+INTP+QG AAD+ M AML I
Sbjct: 1244 KTIETAHKYGWTRTLMGRYRQLPDIKG-NKGMKGHAERASINTPLQGGAADIVMKAMLII 1302

Query: 1055 SKNARLKELGWKLLLQV 1071
              N RLKELG+KL++Q+
Sbjct: 1303 EDNKRLKELGFKLIMQI 1319


>gi|303274755|ref|XP_003056693.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461045|gb|EEH58338.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 912

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/821 (46%), Positives = 501/821 (61%), Gaps = 72/821 (8%)

Query: 311  DAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKY----K 366
            D A+ +   KK S+ E  +        LA     V  V+ V  AK+V+ +L +      +
Sbjct: 51   DVADDSKTEKKTSDLEGDKP-----DNLAGLIDEVQTVETVEEAKRVLGVLMSNLGSADR 105

Query: 367  HLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFG-------------------- 406
             + HA DTEVA IDV  +TPV HG V CFS++ GP+ DF                     
Sbjct: 106  PIYHAVDTEVADIDVADQTPVGHGVVTCFSVFCGPDVDFAPGAGGGGGGGDAAAADGKEN 165

Query: 407  -----------------NGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNH 449
                               KS +WVD L  G       F P+FE P  KKVWHNYSFD H
Sbjct: 166  DSGNGNGDGGGGTSTGAKRKSLLWVDTLKLGDEGWAI-FKPYFESPDAKKVWHNYSFDRH 224

Query: 450  VLENYG-LKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKG 508
            V+EN+G +K++GF ADTMHMARLW+S+R+ EGGYSLEALT D KVMSE  + + +     
Sbjct: 225  VIENHGGIKLAGFAADTMHMARLWNSNRKLEGGYSLEALTSDPKVMSEAGEMFSE----- 279

Query: 509  NTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINT 566
              +E    K  MK IFG+ K+KKDG+ GK   + P++++Q   E+RE WI YSA D+  T
Sbjct: 280  AGEELIRSKRGMKKIFGKPKIKKDGTPGKTIELPPIDQIQNDPEQRETWIEYSALDAQAT 339

Query: 567  LKLYKSLKKKLLEMSW----KLDGKPV--PGKSMFDFYQEYWQPFGEILVKMETEGMLVD 620
              L +SL+ KL  +S     +L  KP      ++++FY  Y + FGE+L  ME+ GM VD
Sbjct: 340  WFLRESLEAKLRGISCDACPRLSDKPTFHECANLWEFYTTYLREFGEVLTDMESAGMFVD 399

Query: 621  REYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSE 680
            +++L   EK A A+++ A + FR+WA K CP A++MNVGS  Q+RQLLF G  N + D  
Sbjct: 400  KKHLEGAEKQALADKKVAEDYFRRWAMKMCPAAEHMNVGSGIQVRQLLFAGARNKRPDKP 459

Query: 681  SLPIERIFKVPNTEGVI-AEGK---KTPSKFRNITLRSIGV-DLPTEMYTATGWPSVGGD 735
             +  ER F + + E     EG    K P K    TL  +   DL   +YTATG P+V   
Sbjct: 460  GVEKEREFAMVSPEWTAWDEGGREGKAPKKGAKFTLHGVTKRDLAVPVYTATGLPAVSSV 519

Query: 736  ALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISAL 795
             L++LA    A  + VD    L D+  T +   K   A+ +  F    +  EAC A+ AL
Sbjct: 520  VLRSLAGRPGAAREIVDTWDALTDAEKTNDALKKSCGAAYDA-FGGGYDGAEACAAVDAL 578

Query: 796  CEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRY 855
             +V +ID+L+SNFI+PLQ  N+ GK GRVH +LNINTETGRLSARRP+LQNQPALEKDRY
Sbjct: 579  NDVAAIDTLLSNFIIPLQSDNLRGKTGRVHTALNINTETGRLSARRPSLQNQPALEKDRY 638

Query: 856  KIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRN 915
             IR+AF   PGN L+VADYGQLELR+LAH+A C SM +AF+AGGDFHSRTAM MY  IR 
Sbjct: 639  GIRKAFTCRPGNILVVADYGQLELRLLAHMAGCASMREAFEAGGDFHSRTAMGMYKEIRE 698

Query: 916  AVETGQVLLEW----HGEDKPPVP-LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
            A++ G+ LLE+    + ED+   P L+KD FASERRKAK+LNFSIAYGKT  GLA+D+ V
Sbjct: 699  AMDEGKCLLEYGSEGYDEDEANRPALVKDMFASERRKAKVLNFSIAYGKTAHGLAKDFGV 758

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
            S +EA+ TV+LWY++R EV  WQE +   +     V TLLGR R  P   S    +R H 
Sbjct: 759  STKEAEDTVNLWYSDRPEVRAWQEVQHANATKLGKVSTLLGRHRNLPEASSRDEMRRQHA 818

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             RA+INTP+QG AAD+AM AM++I +  RLKE+G++LL+Q+
Sbjct: 819  LRASINTPIQGGAADIAMLAMMQIHRCPRLKEIGYELLMQI 859


>gi|328868272|gb|EGG16650.1| mitochondrial DNA polymerase A [Dictyostelium fasciculatum]
          Length = 1855

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/738 (48%), Positives = 466/738 (63%), Gaps = 64/738 (8%)

Query: 343  SNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPE 402
            ++V  V+ V  A+++          + HACDTEV  IDVK+++P+ HG++ICFSIY GP+
Sbjct: 1123 NDVTCVNTVEHAREI---------DVYHACDTEVIDIDVKEQSPIGHGKIICFSIYCGPD 1173

Query: 403  ADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
             DFG G S IWVD+L   G ++L  F  +FED SI KVWHNY+FD HV  N+ + V GF 
Sbjct: 1174 IDFGTG-SRIWVDILGSNGDEILQIFKEYFEDESIFKVWHNYAFDRHVFYNHNIDVVGFG 1232

Query: 463  ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKD 522
             DTM MARLWD+SR   GGYSLE LT D      DK                  K +M D
Sbjct: 1233 GDTMLMARLWDASRMMRGGYSLEGLTKDLL----DKH-----------------KTNMDD 1271

Query: 523  IFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTLKLYKSLKKKLLEM 580
            +FG+ KLK DG+ GK   + P+E LQR  + L  WI YS+ D+  T  L ++L KKL+ M
Sbjct: 1272 LFGQPKLKSDGTPGKGIILPPLEHLQRSSKHLTKWIEYSSRDAEVTWMLRENLHKKLMTM 1331

Query: 581  SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
             W       P  +M+DFY   W+PFG++L  ME  GM VD E+L  +E +A+ +      
Sbjct: 1332 EWI-----GPNSNMWDFYYMMWRPFGQLLTDMERRGMKVDLEHLKGVEVIAQRDITEHNE 1386

Query: 641  RFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
             FR+WA  +C + K+MN+ SD Q++Q LF    N K   E    E   +  N +G+I EG
Sbjct: 1387 NFRRWALGYCENVKHMNIDSDAQVQQFLFAPCRNVKTKEEMAREEEFERE-NVDGIIEEG 1445

Query: 701  KKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDS 760
             K     + I  +  G+ LP    T +GWPSV   +L+ L+       D  +G +     
Sbjct: 1446 AK--KAKKKIGFKLAGLGLPVPGVTNSGWPSVDAASLRLLSGK-----DPANGKYG---- 1494

Query: 761  GCTEETEYKG-AV------ASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQ 813
                 T Y   AV      A+  +I   ++E R+AC AI++L EV SI +LIS+FI+PLQ
Sbjct: 1495 -----TAYNHFAVDRLPPNATEEEIEKAKEEGRQACLAIASLLEVGSIGTLISSFIIPLQ 1549

Query: 814  GSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
               ++  N R+H S+N+NTETGRLS+RRPNLQNQPALEKDRYKIR+AF   PGN+L+VAD
Sbjct: 1550 --RLADSNHRLHTSVNVNTETGRLSSRRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVAD 1607

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            YGQLELR+L H+ NCKSMLDAF+ GGDFHSRTAM MYPH+R AV+ G+VLLEW GE  PP
Sbjct: 1608 YGQLELRLLGHITNCKSMLDAFRVGGDFHSRTAMGMYPHVRAAVDAGEVLLEWDGEGAPP 1667

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             PLLKD FASERRKAK LNFSIAYGKT  GL++DW V++ EA+ T++ WY +R EVL WQ
Sbjct: 1668 KPLLKDKFASERRKAKTLNFSIAYGKTAHGLSKDWNVTLSEAQNTLNRWYEDRPEVLLWQ 1727

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
             +  + +       TL+GR R  P I S  R    H ERA+INTP+QG AAD+ M AML 
Sbjct: 1728 RSTIQIAHQKKWTRTLMGRYRLLPDIDSKARGFVGHSERASINTPLQGGAADIVMKAMLI 1787

Query: 1054 ISKNARLKELGWKLLLQV 1071
            I ++ARLKELG++L++Q+
Sbjct: 1788 IEQDARLKELGYRLIMQI 1805


>gi|440799260|gb|ELR20315.1| 5'3' exonuclease, SAM domain containing protein [Acanthamoeba
            castellanii str. Neff]
          Length = 1070

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/733 (47%), Positives = 468/733 (63%), Gaps = 59/733 (8%)

Query: 344  NVMVVDNVSAAKKVVWMLTNK-YKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPE 402
             V +VD    A++V+ +L +   +   HACDTE  KI+VK ++P ++GEVIC S+Y GP+
Sbjct: 340  GVTIVDTPEEARRVLRILRSPGVRERYHACDTEAIKIEVKHQSPYNYGEVICASVYCGPD 399

Query: 403  ADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
             DFG G + +W+D +D   R +L+ F  +FED  IKKVWHNYSFD  ++  +G+ V GF 
Sbjct: 400  VDFGTGPN-LWIDNMDDA-RGVLDLFKEYFEDEGIKKVWHNYSFDRAMMWRHGIDVKGFG 457

Query: 463  ADTMHMARLWDSSRRTEGG-YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMK 521
             DT+HMARLWD++R + G  YSLEALTG+              + +G T      K S+K
Sbjct: 458  GDTIHMARLWDAARTSVGKKYSLEALTGE--------------LLEGET------KRSIK 497

Query: 522  DIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMS 581
            +IFGR K+ KDG+ GK   +A +E L       WI YS +D+  T +L   L+ +L EM 
Sbjct: 498  EIFGRNKVLKDGTLGK-EIVAGMEALNN-----WIYYSTYDTRGTYELRDKLEDQLREMP 551

Query: 582  WKLDGK-PVPG--KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAA 638
            W  +GK  +PG  ++M+D+YQ YW PFGE+L  ME EG+ V+ +YL+EIE+VA AE +  
Sbjct: 552  WVYEGKKALPGANRTMWDYYQNYWLPFGEVLTDMEREGIKVNVDYLAEIEQVAVAEGKKH 611

Query: 639  VNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIA 698
              RF++WAS++C DA+YMN  SD Q +QL F    N K D + +P ER+F + N EG+  
Sbjct: 612  QIRFKEWASEYCQDARYMNPTSDAQKQQLFFAPCKNLKTD-DMMPAERLFDIENDEGIPD 670

Query: 699  EGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLD 758
                   K R I +   G  LP   +T  GWP+ G + LK LA                 
Sbjct: 671  PVTGKVKKKRQIRISGFG--LPAIAHTGAGWPAAGAEVLKQLA----------------- 711

Query: 759  DSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVS 818
              G   +   K  VA   K F+  +   EAC AI +L ++ SID+L+SNFI+PLQ  +  
Sbjct: 712  --GKPFDNPPKYGVAY--KAFSEGEAGAEACQAIDSLVKMSSIDTLLSNFIVPLQ--HEV 765

Query: 819  GKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
              N R+H SLNINTETGRLS RRPNLQNQPALEKD +KIR +F    GN LIVADYGQLE
Sbjct: 766  DPNNRIHASLNINTETGRLSCRRPNLQNQPALEKDIFKIRSSFTCEKGNKLIVADYGQLE 825

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+  C+SM+DAF+ GGDFHSRTA+ MY H++ A++ G+VLLEW GE KPPVPLLK
Sbjct: 826  LRLLAHMTKCRSMIDAFQKGGDFHSRTALGMYSHVQEAIQKGEVLLEWGGEGKPPVPLLK 885

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D FA+ER++AK LNFSIAYGKT +GL++DW VS++EAK T+  WY++R EVL WQE   +
Sbjct: 886  DIFATERKRAKTLNFSIAYGKTAMGLSKDWGVSLQEAKDTLQRWYSDRPEVLQWQENTIR 945

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +  TL+GR R  P I       R H ERAAINTP+QG AAD+ + AM+    + 
Sbjct: 946  TARKTGYTKTLMGRYRPLPDISHSKPMMRGHAERAAINTPIQGGAADIVINAMVLAHHDE 1005

Query: 1059 RLKELGWKLLLQV 1071
             L+  GWK++LQV
Sbjct: 1006 LLRRWGWKMILQV 1018


>gi|413919674|gb|AFW59606.1| chloroplast DNA polymerase [Zea mays]
          Length = 1154

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/542 (59%), Positives = 396/542 (73%), Gaps = 26/542 (4%)

Query: 314 EGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACD 373
           E T Q  +     + E L+  R  L++ Y  V+VVDNV +A+ VV +LT KY++ +HACD
Sbjct: 197 EETVQPSRTRAPSSQESLDA-RKALSTIYDKVLVVDNVMSARSVVQLLTTKYRNYIHACD 255

Query: 374 TEVAKIDVKQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAP 430
           TEVA I+VKQETPV HG+V CFSIYSG    EADFGNGK+CIWVD+LDGG  D+L EF P
Sbjct: 256 TEVANINVKQETPVGHGKVTCFSIYSGTKGAEADFGNGKTCIWVDVLDGGP-DVLMEFVP 314

Query: 431 FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490
           FFED SI+KVWHNYSFD+HV+ENYG+KV+GFHADTMH+ARLWDSSRRT+GGYSLE LT D
Sbjct: 315 FFEDSSIRKVWHNYSFDSHVIENYGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTND 374

Query: 491 RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQRE 550
            +VM    K  QK           +GK SMK IFGR+K+KKDGS GKI+ I PVE LQRE
Sbjct: 375 HRVMGVVPKELQK-----------IGKRSMKTIFGRKKIKKDGSEGKITAIEPVEILQRE 423

Query: 551 ERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
           +RELWI YS+ DS++TL+LY+SLK KL    W  DG P PG S++DFY+EYW PFG ILV
Sbjct: 424 DRELWICYSSLDSMSTLRLYESLKSKLERKPWTFDGYPRPGGSLYDFYEEYWCPFGAILV 483

Query: 611 KMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
           KMET GMLVDR YLSEIEKVA A++E+A ++FRKWASK+CPDAKYMNV SDTQ+RQL FG
Sbjct: 484 KMETAGMLVDRAYLSEIEKVAVAQRESAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFG 543

Query: 671 GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWP 730
           G  N     + LP  +  KVPN E  ++EGKK P K+R I L SI  DL T+++TA+GWP
Sbjct: 544 GIENIYKSGDFLPKSKAIKVPNNETAVSEGKKVP-KYRTIDLFSIVEDLKTDIFTASGWP 602

Query: 731 SVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYK-------GAVASNNKIFATEQ 783
           SV G AL+ LA  + +  D V    D++D  C   +E          +  +    F   +
Sbjct: 603 SVSGAALRNLAGKVPS--DLVYSTDDVNDDECGIHSEISHCDLEDTSSYGTAYDAFGGGK 660

Query: 784 EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPN 843
           E +EAC AI+ALCE+CSI+SLISNFILPLQG+++S K GR+HCSLNINTETGRLSAR PN
Sbjct: 661 EGKEACHAIAALCEICSINSLISNFILPLQGNHISCKEGRIHCSLNINTETGRLSARAPN 720

Query: 844 LQ 845
           LQ
Sbjct: 721 LQ 722



 Score =  368 bits (945), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 176/229 (76%), Positives = 196/229 (85%), Gaps = 3/229 (1%)

Query: 846  NQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
            NQPALEKDRYKIRQAF+A PGN+LIVADYGQLELRILAHLA+CKSMLDAFKAGGDFHSRT
Sbjct: 874  NQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLADCKSMLDAFKAGGDFHSRT 933

Query: 906  AMNMYPHIRNAVETGQVLLEWH---GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPV 962
            AMNMY HIR AVE  +V+LEWH   G++KPPVPLLKDAF +ERRKAKMLNFSIAYGKT  
Sbjct: 934  AMNMYQHIREAVEEEKVILEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAH 993

Query: 963  GLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSL 1022
            GLARDWKVSV+EAK T+ LWY++R+EVL WQ  +K+ +     V+TLLGR+RRFP +   
Sbjct: 994  GLARDWKVSVKEAKDTLKLWYSDRKEVLAWQMKQKQLAHEKREVYTLLGRSRRFPNMAHA 1053

Query: 1023 TRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            T  QR HIERAAIN PVQGSAADVAMCAMLEI +N RLKELGW LLLQV
Sbjct: 1054 TSGQRGHIERAAINAPVQGSAADVAMCAMLEIDRNTRLKELGWTLLLQV 1102


>gi|301116858|ref|XP_002906157.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
 gi|262107506|gb|EEY65558.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
          Length = 1054

 Score =  633 bits (1633), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 348/738 (47%), Positives = 463/738 (62%), Gaps = 59/738 (7%)

Query: 345  VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
            V ++ +   A++V+  L     +  HACDTEVA+IDVK   PV +G V C S+YSGP+ D
Sbjct: 315  VNLIQDEEGARRVLQKLEELGPNHFHACDTEVAQIDVKAVGPVGNGVVTCLSLYSGPDVD 374

Query: 405  FGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHAD 464
            +GNG   +WVD LD      L  F  F E  +  KVWHNYSFD HVL N+G+ V G   D
Sbjct: 375  YGNG-PYVWVDNLDSA-EGTLQLFKEFLESKNYLKVWHNYSFDRHVLFNHGINVQGLGGD 432

Query: 465  TMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIF 524
            TMHMARLW+++R   GGYSLE+LT D  ++ + KK                    MK++F
Sbjct: 433  TMHMARLWNTARFQNGGYSLESLTAD--LLLQRKK-------------------PMKELF 471

Query: 525  GRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLKKKLLEMSW 582
            G  KLKKDGS GK   +  VEELQR  E R+ WI YS +D+ +T  L++ L+ KL +  W
Sbjct: 472  GIPKLKKDGSKGKERIMPTVEELQRFPEFRKRWIRYSVYDAESTWFLHRVLQDKLDQTFW 531

Query: 583  --KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
              K +G      SM++FY+EY  PFGE L  +E  GM VD EYL+ +EK A  ++     
Sbjct: 532  FEKPNGGESQVGSMYEFYREYIVPFGECLTDIERRGMHVDLEYLAGVEKQALEDRARLEK 591

Query: 641  RFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
               +WAS++C +++ +N+ S  Q +QLLF    N K   + LP ER F+V NTEG I EG
Sbjct: 592  LVLQWASRYCEESERINLYSAAQKQQLLFAPYFNKKKKEQVLPAERSFEVENTEGFIEEG 651

Query: 701  KKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDS 760
            K+   K RNIT+R +G+  P   +TA+G P+   + LK LA +  A              
Sbjct: 652  KQKAKKKRNITIRGLGI--PPTHFTASGLPAASAEVLKDLAGHPEAN------------- 696

Query: 761  GCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGK 820
                  +Y  A       F  ++E   AC A+ AL ++ SI+++++NFILPLQ   ++  
Sbjct: 697  ----PPQYGRAYGH----FEDKEEGAAACVALKALFDISSINTMLNNFILPLQ--ELADS 746

Query: 821  NGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELR 880
            N RVHCSLN+NT+TGRLS+R+PNLQNQPA+ KDRYKIR AF A PG  LIVADY QLELR
Sbjct: 747  NSRVHCSLNLNTDTGRLSSRKPNLQNQPAMGKDRYKIRDAFTAPPGKKLIVADYSQLELR 806

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDK-PPVPLLK 938
            ++AH+  CK+M++AFKAGGDFHSRTAM MYP++  AVE G+ LLEW H   K PP PLLK
Sbjct: 807  LMAHITQCKAMIEAFKAGGDFHSRTAMGMYPYVAKAVENGEALLEWDHTTGKEPPAPLLK 866

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D +  ER+ AK+LNFSIAYGKT  GLA+D+ VS +EA  T++ WY++R EV  WQ+   +
Sbjct: 867  DKYGDERKNAKVLNFSIAYGKTAFGLAKDFNVSRKEAADTLEKWYSDRGEVRDWQKKAIE 926

Query: 999  ESRIDNHVHTLLGRARRFPAI----KSLT-RSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
             +R   +  TLLGR RR P       S+T +  R H ERAAINTP+QG+AADV M AML+
Sbjct: 927  TARTFGYTRTLLGRYRRLPDAMLRDDSMTSKKARGHAERAAINTPIQGAAADVVMQAMLQ 986

Query: 1054 ISKNARLKELGWKLLLQV 1071
            +  + RL+ELGW ++ Q+
Sbjct: 987  VHHSPRLRELGWGMVSQI 1004


>gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14]
          Length = 855

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 357/766 (46%), Positives = 472/766 (61%), Gaps = 67/766 (8%)

Query: 323  SENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
            SE+  S  L  L    A  +   +V D  +A + V  +      H VHACDTEVA IDVK
Sbjct: 90   SEDIESHLLHGLSEADADHWPVNLVQDKQTADRLVQQIYALGPDH-VHACDTEVADIDVK 148

Query: 383  QETPVDHGEVIC----FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
               PV +G+V       ++Y GP+ ++GNG   IWVD LD      L  F  F ED S+K
Sbjct: 149  SVGPVGNGKVSLQFEDIALYDGPDVNYGNG-PYIWVDNLDNA-EGTLEYFRAFLEDSSLK 206

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
            KVWHNYSFD HVL N+G+ V G H DTMHMARLW+++R   GGYSL+ALT D  ++ + K
Sbjct: 207  KVWHNYSFDRHVLFNHGINVQGLHGDTMHMARLWNTARFKRGGYSLQALTSD--LLHQRK 264

Query: 499  KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EERELWI 556
            K                   +MK++FG  K +KDGS GK  TI  V +LQR  + R  WI
Sbjct: 265  K-------------------NMKELFGTPKPRKDGSPGKEKTIPNVADLQRCADFRSRWI 305

Query: 557  SYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG----KSMFDFYQEYWQPFGEILVKM 612
             YS FD+ +T  L++ L+ KL    W  D   + G    +SM++FY +Y  PFGE L  +
Sbjct: 306  RYSVFDAESTWFLHRVLQHKLELTHWIEDADVLTGQQVDRSMYEFYLKYLVPFGECLTDI 365

Query: 613  ETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGK 672
            E +GM VDR YL  +EK A  +++        WA ++C +A  MNV S  Q +QLLF   
Sbjct: 366  ERKGMNVDRAYLRRVEKTALNDRKRLEQHVLTWAKRYCEEADRMNVYSAAQKQQLLFAPY 425

Query: 673  PNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSV 732
             +++  +  LP ER F+V NTE  I  GK+ P K RNIT+R  G  L    +TA+G PSV
Sbjct: 426  SDAQGKA-ILPAERSFEVENTEQHIEPGKQRPKKKRNITIRGFG--LTPISFTASGLPSV 482

Query: 733  GGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAI 792
                L+ LA N  A       A+D                      FA ++E   AC A+
Sbjct: 483  TASVLEELAGNPEANPPKYGKAYDH---------------------FADKEEGAAACHAL 521

Query: 793  SALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEK 852
             AL E+ SI+++++NFILPLQ   ++   GRVHCSLN+NT+TGRLS+R+PNLQNQPALEK
Sbjct: 522  RALYEISSINTMLNNFILPLQ--ELADSAGRVHCSLNLNTDTGRLSSRKPNLQNQPALEK 579

Query: 853  DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
            DRYKIR AF+A  G  LIVADY QLELR+LAH+  CK+M++AF+AGGDFHSRTA+ MY +
Sbjct: 580  DRYKIRDAFVAPKGKKLIVADYSQLELRLLAHITQCKAMIEAFRAGGDFHSRTAVAMYDN 639

Query: 913  IRNAVETGQVLLEWHGED--KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
            +  AVE+G+VLLEW       PPVPLLK+ FA+ER+ AK+LNFSIAYGKTP GL++D+ V
Sbjct: 640  VAKAVESGEVLLEWDYTKGTSPPVPLLKEKFATERKNAKILNFSIAYGKTPFGLSKDFGV 699

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP--AIKS---LTRS 1025
               EA K +D WY  RQEV  WQE     +R   +  TL+GR RR P   +KS   ++R 
Sbjct: 700  RRVEASKILDKWYGGRQEVRKWQEQAIDTARKFGYTRTLMGRYRRLPDAMLKSNSFISRK 759

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             ++H ERAA+NTP+QG+AAD+ M AML I+KN+RL+ +GW+++ Q+
Sbjct: 760  AQSHAERAAVNTPIQGAAADLVMQAMLRINKNSRLRSMGWEMVCQI 805


>gi|224011788|ref|XP_002294547.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
            CCMP1335]
 gi|220969567|gb|EED87907.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
            CCMP1335]
          Length = 745

 Score =  613 bits (1581), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 333/716 (46%), Positives = 452/716 (63%), Gaps = 70/716 (9%)

Query: 369  VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGK---SCIWVDLLDGGGRDLL 425
            +HACDTEV  ID+K+  PV HG V C S+YSG + D+G G    + +W+D LD   +DLL
Sbjct: 33   IHACDTEVMDIDLKEVGPVGHGYVTCISVYSGEDFDYGLGDGPGTMLWIDNLDDA-KDLL 91

Query: 426  NEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLE 485
             EF P+ ED  + KVWHNY FD HVL N G+ V GF  DTMHMARL D+SR     YSLE
Sbjct: 92   QEFKPWLEDAKVMKVWHNYGFDRHVLFNEGINVLGFGGDTMHMARLSDTSRMK---YSLE 148

Query: 486  ALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVE 545
            +LT              +D+ K         K+ MK+IFG  +L+KDG+ G I  I PVE
Sbjct: 149  SLT--------------EDLLKQR-------KVPMKEIFGVPRLRKDGTDGAIVDIPPVE 187

Query: 546  ELQREE--RELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
             +QR+   RE WI YSA D+ +T  LY+ LKK+LL++ W      +   +M  +YQ + +
Sbjct: 188  VMQRDPKFRESWIKYSAMDAKSTYNLYQHLKKELLKVGW------IRQMNMMQYYQLHMR 241

Query: 604  PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC-PDAKYMNVGSDT 662
            PFGE+L  +E  GMLV ++YL+++E  AR ++E  V  FR+WA K   PD   MN+ S  
Sbjct: 242  PFGELLTDLERRGMLVAKDYLADVEVQARKDREGHVEAFRQWAFKQLGPDGLAMNLASSV 301

Query: 663  QLRQLLFGGKPNSKDDSESLPIERIFK-----VPNTEGVIAEGKKTPSKFRNITLRSIGV 717
            QL   LFGG  N+K    +  + R+FK     +P+         +   K+ ++T+RS+G 
Sbjct: 302  QLTTFLFGGAENAKTKEPTEKV-RVFKTAREDIPDDAMEAYPKNEQEPKYVDVTVRSLG- 359

Query: 718  DLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNK 777
             +  + +T +G PS   D L+ LA +  A+      A++                     
Sbjct: 360  -MTPDKFTVSGAPSATADVLRKLAGDPFADPPKYGAAYEF-------------------- 398

Query: 778  IFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRL 837
             F   +   EAC A  +L  + SID++I+NF+  LQ   ++    RVHCSLNINTETGRL
Sbjct: 399  -FGGGEAGHEACVAFFSLTAIGSIDTMIANFLTSLQ--TLADDQNRVHCSLNINTETGRL 455

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
            S+R+PN+QNQPALEKD+YKIRQAF+A PGN+LIVADYGQLELR+LA + +C SM+DAF+A
Sbjct: 456  SSRKPNMQNQPALEKDKYKIRQAFMASPGNNLIVADYGQLELRLLASMTDCTSMIDAFEA 515

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
            GGDFHSRTA+ M+ +I++AV  G VLLEW + + +PP P+LKD +ASERRKAK LNFSIA
Sbjct: 516  GGDFHSRTALGMFKYIQDAVANGDVLLEWDYSKGEPPKPMLKDQYASERRKAKTLNFSIA 575

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YGKT  GL++DW VS++EA++ +  WY+ R EV  WQ+  KK +R      TL+GR R  
Sbjct: 576  YGKTAHGLSQDWGVSLKEAEEMLRAWYDSRPEVEKWQQNTKKAARNYGITRTLMGRYRHL 635

Query: 1017 P-AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P A++   R +  H ERA+INTP+QG AADVAM AM++I+ +  LK+LGW LL+QV
Sbjct: 636  PHAMEGNNRKRLGHAERASINTPIQGGAADVAMMAMIKINDSLLLKKLGWILLMQV 691


>gi|449018209|dbj|BAM81611.1| plant organellar DNA polymerase [Cyanidioschyzon merolae strain 10D]
          Length = 948

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 328/719 (45%), Positives = 428/719 (59%), Gaps = 61/719 (8%)

Query: 359  WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
            WM   ++    HA DTE   ID  +++PV  G+VIC S + GP  DFGNG   +W+D   
Sbjct: 235  WM---EHSQCYHAWDTETIGIDPTEDSPVGKGQVICLSAFCGPRVDFGNGPR-LWIDNF- 289

Query: 419  GGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRT 478
            G  +  L+ F  +FE+  I KVWHNYSFD  VL N+G+   GF  DTMHM+RL D++R  
Sbjct: 290  GDAQGTLDYFKSYFENEEIPKVWHNYSFDRAVLYNHGIDCRGFGGDTMHMSRLLDAARLR 349

Query: 479  EGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKI 538
               YSLEALT D  +                       K SM+++FGR ++ K+G  GK 
Sbjct: 350  ---YSLEALTEDFLLRK---------------------KRSMRELFGRPRILKNGKPGKE 385

Query: 539  STIAPVEELQREEREL--WISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
              +    ELQ +   +  W+ YS +D+  T  L    ++ L E   ++ G     ++M+D
Sbjct: 386  IIVPSTSELQMDPETMYHWVQYSTYDAEATWYLRDKFERLLREQ--EILGSE---RTMYD 440

Query: 597  FYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
             Y E + PFG +L  ME  G  +D   L + ++VA A+++     FR+WA+++C DA +M
Sbjct: 441  LYTECFVPFGAVLTDMERIGFKIDIARLQDAQRVAEADRQRYTAMFREWAARYCADAIHM 500

Query: 657  NVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIG 716
            N  S+ Q RQ  F    N K D E LP ER F+V NTE V+    K P K R I +  +G
Sbjct: 501  NAESENQKRQFFFAPVRNKKTD-ELLPAERTFEVENTEQVVESAGKKPRKKRTIQISGLG 559

Query: 717  VDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNN 776
              LP   +TA+GWP+     L+ LA   SA        +D       E  E         
Sbjct: 560  --LPPVAFTASGWPACTAVVLRKLAGTPSASPAQGGLLYDFLTKERRESAE--------- 608

Query: 777  KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGR 836
                   +A  AC A+ AL E  ++ +L+ +FI PLQ   +  KN R+H SLN+NTETGR
Sbjct: 609  -------DALAACKAVEALLEAGAVGTLLDSFIDPLQ--KMVDKNHRIHASLNLNTETGR 659

Query: 837  LSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
            LS+RRPNLQNQPALEKDRY++R AF    GN+LIVADYGQLELR+LAH+ANC+SM++AFK
Sbjct: 660  LSSRRPNLQNQPALEKDRYRVRDAFTCEEGNTLIVADYGQLELRLLAHIANCRSMIEAFK 719

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLE----WHGEDKPPVPLLKDAFASERRKAKMLN 952
            AGGDFHSRTA +MYP+I  +V  G VLLE     +G+     PLLKD +A ERR+AK LN
Sbjct: 720  AGGDFHSRTASSMYPYIAESVARGDVLLEPEPNANGQATSSKPLLKDVYAGERRRAKTLN 779

Query: 953  FSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGR 1012
            FSIAYGKTP GLARDW  S++EA++TVD WY +R EV  WQE   K ++    V TLLGR
Sbjct: 780  FSIAYGKTPAGLARDWGTSLKEARETVDAWYRDRPEVRAWQERAIKFAQTHGFVKTLLGR 839

Query: 1013 ARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             R  P I S   +   H ERAAINTP+QGSAADV M AML I  NARL ELGW+++LQV
Sbjct: 840  RRPLPEINSPNTNAARHAERAAINTPLQGSAADVVMKAMLLIHSNARLAELGWRMILQV 898


>gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase, partial [Phaeodactylum tricornutum CCAP
            1055/1]
          Length = 774

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 330/757 (43%), Positives = 451/757 (59%), Gaps = 67/757 (8%)

Query: 345  VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
            V +V   + A+KV+  L      + HACDTEV  ID+K   PV +G V C S+YSGP+ D
Sbjct: 1    VTIVRTKAQAQKVLKRLFAADPSIFHACDTEVMAIDLKSVGPVGNGYVTCASVYSGPDFD 60

Query: 405  FGNGK---SCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGF 461
            +G G+   SC+W+D LD     +L EF  +FE+P   KVWHNY FD HV+ N G+ V G 
Sbjct: 61   YGLGEGPGSCLWIDNLDDAA-GILQEFKAWFENPRFLKVWHNYGFDRHVMWNEGIDVQGL 119

Query: 462  HADTMHMARLWDSSRRTE---GGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKI 518
              DTMHMARL D+ R      GGYSLEALT D  ++S  K+                   
Sbjct: 120  GGDTMHMARLQDTCRSKMAKGGGYSLEALTAD--LLSRRKQ------------------- 158

Query: 519  SMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLKKK 576
             MK++FG  +L+KDGS G +  I PVE +QR  E R +WI YS +D+  T  L + L+K+
Sbjct: 159  PMKELFGVHRLRKDGSEGALVDIPPVESMQRDPESRSMWIKYSCYDAEGTWLLREELEKR 218

Query: 577  LLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVD-REYLSEIEKVARAEQ 635
            L    W      +  K+++D+Y  + +PF E+L  ME  G+ V+ ++YL  +E+ AR ++
Sbjct: 219  LKMKPW------IGNKNLWDYYFLHMRPFAEVLTDMERRGVRVNAKDYLFNVERKAREDR 272

Query: 636  EAAVNRFRKWA-SKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTE 694
                  FR+WA SK  PD   +N+ S TQL+ L FGG  N K   +S  + R+ KVP  E
Sbjct: 273  VHHSKIFREWAASKIGPDGLALNLSSATQLQALFFGGSENLKTKEQSETV-RVVKVPRDE 331

Query: 695  -------GVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAE 747
                    +  + K    + R+  L       P +        ++  D L+ +      +
Sbjct: 332  IPEDALHALENQSKAEAQRIRDHLLA------PVQDKNIDDLETMSDDDLRDMLITRELQ 385

Query: 748  YDCVDGAH------DLD-DSG---CTEETEYKGAVASNNKIF--ATEQEAREACDAISAL 795
            +    G        DL+  SG       T+  G + +N  +F  A E   +E C+A+ +L
Sbjct: 386  FAGTRGEMLDRLRADLEFTSGVLNAVSPTDQDGHLFTNTTLFLQAYENFGKEGCEALFSL 445

Query: 796  CEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRY 855
            C + SID++I+ F+  LQ   V  K+ RVHCSLN+NTETGRLS+R PNLQNQPALEKD Y
Sbjct: 446  CAIKSIDTMIATFLTSLQ-ERVDNKS-RVHCSLNLNTETGRLSSRGPNLQNQPALEKDTY 503

Query: 856  KIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRN 915
            +IR+AF A PGN+LIVADYGQLELR+LA +  CKSM++AF+AGGDFHSRTAM+M+ +++ 
Sbjct: 504  QIRKAFEASPGNNLIVADYGQLELRLLASMTGCKSMIEAFEAGGDFHSRTAMDMFDYVKA 563

Query: 916  AVETGQVLLEW-HGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEE 974
             V++G+ LLEW + +  PP PL+KD FASERRKAK LNFSIAYGKT  GL+ DW V+++E
Sbjct: 564  KVDSGEALLEWDYAKGDPPKPLVKDLFASERRKAKTLNFSIAYGKTAFGLSDDWGVTLQE 623

Query: 975  AKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAA 1034
            A++ +  WY  R EV  WQ   K  +R   +  TL+GR R  P  KS  +      ERA+
Sbjct: 624  AEEMLKAWYKARPEVDVWQTQVKLTARNHGYTRTLMGRYRDLPEAKSKRQKFAKQAERAS 683

Query: 1035 INTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            INTP+QG AAD+AM AM +I+ N +LK LGW LLLQV
Sbjct: 684  INTPIQGGAADIAMMAMNKINANEKLKALGWILLLQV 720


>gi|403355195|gb|EJY77168.1| DNA polymerase I family protein [Oxytricha trifallax]
          Length = 887

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 315/756 (41%), Positives = 440/756 (58%), Gaps = 80/756 (10%)

Query: 347  VVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFG 406
            ++ +   A++VV +L   Y   +HA DTE   ID K+E+PV HG++IC +++ GP+ DFG
Sbjct: 131  IIRSREEARRVVQIL-KAYPDRIHAWDTETIHIDAKEESPVGHGQIICATVFIGPDVDFG 189

Query: 407  NGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
            NG      +  D    + + EF  + EDP+  K WHNY +D H+  N+G+ V GF ADTM
Sbjct: 190  NGPRLFIDNYADA--LNTIMEFKEYLEDPNYLKCWHNYGYDRHIFFNHGINVQGFGADTM 247

Query: 467  HMARLWDSSRRTEGGYSLEAL--------TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKI 518
            HMARL+D S +    YSL AL        T  +++M +D +  QK +     +E  +  +
Sbjct: 248  HMARLYDPS-KMPNQYSLSALSEILKGKITEQKQLMIQDLR--QKLLVDPQKNETQLSTL 304

Query: 519  SMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLL 578
                        KDG+ GK+ T   VE +   + E W+ YS +D+  T  L ++L K L+
Sbjct: 305  ------------KDGTKGKVLTFPDVEVIHTNKVEEWVGYSCYDAEITFFLRETLSKLLM 352

Query: 579  EMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAA 638
                  +G     + M   Y +YW+ FGE+L  ME EG+ +D EYL EI+ +A  ++   
Sbjct: 353  TQQTDEEGM----QDMLGLYSKYWRAFGEVLTDMEREGIKIDVEYLKEIQLIAEKDKSQY 408

Query: 639  VNRFRKWASKHCPDAKYMNVGSDTQLRQLLF------GGKPNSKDDSESL---PIERIFK 689
              +F +W  K   DAK  N  S  Q++QLLF      G KP   +D E +   P ER+FK
Sbjct: 409  EEKFLEWVYKIQEDAKEFNPASAHQIQQLLFAPFNKRGKKPTFDNDGEIMYEYPKERLFK 468

Query: 690  VPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYD 749
            V NT G I EGKK   K R + +  +G+  P   YT +  PS     +K LA        
Sbjct: 469  VENTAGFIKEGKKQALKQREMKITGLGI--PALDYTQSSLPSADTPVIKRLA-------- 518

Query: 750  CVDGAHDLDDSGCTEETEYKGAVASNNKIFA---TEQEAREACDAISALCEVCSIDSLIS 806
               G  D            KG        F     E+E +E C A+    +   I++L++
Sbjct: 519  ---GRPD------------KGEFGEAYNFFLRQDKEEEGKECCWALWNWIQYKGIETLLN 563

Query: 807  NFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG 866
             +ILPLQ      ++GR+HCS+N+NTETGRLS R+PNLQNQPAL+KD+YKIR+AF+A  G
Sbjct: 564  TYILPLQ--KAPDQHGRIHCSMNLNTETGRLSCRKPNLQNQPALDKDKYKIRRAFVADQG 621

Query: 867  NSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW 926
            N L+VADYGQLELR+LAH+ANCK M+DAFK GGDFHSRTA+ MYP I+  +E+G++LLEW
Sbjct: 622  NKLVVADYGQLELRVLAHMANCKGMIDAFKLGGDFHSRTALGMYPEIKKDLESGEILLEW 681

Query: 927  -HGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNE 985
             + + K P PLLKD +A+ER+KAK++NFSIAYGKT  G  +DW  S EEA+ TV+LWY++
Sbjct: 682  DNSKGKAPKPLLKDKYANERKKAKIMNFSIAYGKTVHGFMKDWNCSKEEAQATVELWYSD 741

Query: 986  RQEVLTWQEARKKESRIDNHVHTLLGRARRFPA--IKSLTRS--------QRNHIERAAI 1035
            R EV  WQ+  + ++       TLLGR R      I S T           + H  RAAI
Sbjct: 742  RPEVKEWQKMIQSKAITRGWTQTLLGRYRNLTKHFIMSSTNEGYSFKSNMMKEHGLRAAI 801

Query: 1036 NTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            NTP+QG AAD+ + AM+++ K+  LK+LG+KLLLQ+
Sbjct: 802  NTPIQGGAADIVIAAMVKLHKDQMLKDLGYKLLLQI 837


>gi|359817569|gb|AEV66614.1| mitochondrial DNA polymerase [Oxytricha trifallax]
          Length = 982

 Score =  540 bits (1391), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 315/784 (40%), Positives = 445/784 (56%), Gaps = 106/784 (13%)

Query: 347  VVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFG 406
            ++ +   A++VV +L   Y   +HA DTE   ID K+E+PV HG++IC +++ GP+ DFG
Sbjct: 196  IIRSREEARRVVQIL-KAYPDRIHAWDTETIHIDAKEESPVGHGQIICATVFIGPDVDFG 254

Query: 407  NGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
            NG      +  D    + + EF  + EDP+  K WHNY +D H+  N+G+ V GF ADTM
Sbjct: 255  NGPRLFIDNYADA--LNTIMEFKEYLEDPNYLKCWHNYGYDRHIFFNHGINVQGFGADTM 312

Query: 467  HMARLWDSSRRTEGGYSLEAL--------TGDRKVMSEDKK---------------AYQK 503
            HMARL+D S +    YSL AL        T  +++M +D +                 Q 
Sbjct: 313  HMARLYDPS-KMPNQYSLSALSEILKGKITEQKQLMIQDLRQKLLVDPQKNETQLSCIQS 371

Query: 504  DMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDS 563
             ++ G  DE    K+++ ++FG  +  KDG+ GK+ T   VE +   + E W+ YS +D+
Sbjct: 372  YLTTGIKDE----KVNIIELFGDYRTLKDGTKGKVLTFPDVEVIHTNKVEEWVGYSCYDA 427

Query: 564  INTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREY 623
              T  L ++L K L+      +G     + M   Y +YW+ FGE+L  ME EG+ +D EY
Sbjct: 428  EITFFLRETLSKLLMTQQTDEEGM----QDMLGLYSKYWRAFGEVLTDMEREGIKIDVEY 483

Query: 624  LSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF------GGKPNSKD 677
            L EI+ +A  ++     +F +W  K   DAK  N  S  Q++QLLF      G KP   +
Sbjct: 484  LKEIQLIAEKDKSQYEEKFLEWVYKIQEDAKEFNPASAHQIQQLLFAPFNKRGKKPTFDN 543

Query: 678  DSESL---PIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGG 734
            D E +   P ER+FKV NT G I EGKK   K R + +  +G+  P   YT +  PS   
Sbjct: 544  DGEIMYEYPKERLFKVENTAGFIKEGKKQALKQREMKITGLGI--PALDYTQSSLPSADT 601

Query: 735  DALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFA---TEQEAREACDA 791
              +K LA           G  D            KG        F     E+E +E C A
Sbjct: 602  PVIKRLA-----------GRPD------------KGEFGEAYNFFLRQDKEEEGKECCWA 638

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALE 851
            +    +   I++L++ +ILPLQ +    ++GR+HCS+N+NTETGRLS R+PNLQNQPAL+
Sbjct: 639  LWNWIQYKGIETLLNTYILPLQKA--PDQHGRIHCSMNLNTETGRLSCRKPNLQNQPALD 696

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
            KD+YKIR+AF+A  GN L+VADYGQLELR+LAH+ANCK M+DAFK GGDFHSRTA+++  
Sbjct: 697  KDKYKIRRAFVADQGNKLVVADYGQLELRVLAHMANCKGMIDAFKLGGDFHSRTALDL-- 754

Query: 912  HIRNAVETGQVLLEW-HGEDKPPVPLLKDA-------------FASERRKAKMLNFSIAY 957
                  E+G++LLEW + + K P PLLKD              +A+ER+KAK++NFSIAY
Sbjct: 755  ------ESGEILLEWDNSKGKAPKPLLKDKQVVLIFNLSTFIRYANERKKAKIMNFSIAY 808

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            GKT  G  +DW  S EEA+ TV+LWY++R EV  WQ+  + ++       TLLGR R   
Sbjct: 809  GKTVHGFMKDWNCSKEEAQATVELWYSDRPEVKEWQKMIQSKAITRGWTQTLLGRYRNLT 868

Query: 1018 A--IKSLTRS--------QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
               I S T           + H  RAAINTP+QG AAD+ + AM+++ K+  LK+LG+KL
Sbjct: 869  KHFIMSSTNEGYSFKSNMMKEHGLRAAINTPIQGGAADIVIAAMVKLHKDQMLKDLGYKL 928

Query: 1068 LLQV 1071
            LLQ+
Sbjct: 929  LLQI 932


>gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  534 bits (1375), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 317/786 (40%), Positives = 445/786 (56%), Gaps = 87/786 (11%)

Query: 345  VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
            V +V N++ AK+V+ +L NKYK   HA DTE   IDVK ETP++ G +IC S ++GPE +
Sbjct: 51   VTIVRNINDAKRVIDIL-NKYKKQPHAWDTETIDIDVKSETPINRGRLICASAFAGPEVN 109

Query: 405  FGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHAD 464
            FGNG   +++D       DL+  F  +FED  I K+WHNY FD H+  N G+ V GF  D
Sbjct: 110  FGNGPR-LFIDNF-AQNSDLIMLFKEYFEDEKILKIWHNYGFDKHIFGNNGINVRGFFGD 167

Query: 465  TMHMARLWDSSRRTEGGYSLE--ALTGDRKVMSEDKKAYQKDMSKGN-TDE-----GFMG 516
            TMHMARL D S++ +  YSL   +L  + ++     K  +  ++K N TDE        G
Sbjct: 168  TMHMARLLDPSKQPQE-YSLAKLSLAYEEEIKLVKTKRMECLLAKPNLTDEERSSLQLFG 226

Query: 517  --------KISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINT 566
                    K SMK IFG+ K  K+G   K+     + ++    + +  W+ YS  DS  T
Sbjct: 227  EHLLDINLKTSMKQIFGQNKELKNGQVSKLKVYPKILQMHCLPQYINQWVEYSTLDSEIT 286

Query: 567  LKLYKSLKKKLLEMSWKLDGKPVPG-----------KSMFDFYQEYWQPFGEILVKMETE 615
              L  +LK  L +     + KP               S+ D Y +YW   GEIL ++E E
Sbjct: 287  YFLCLTLKDLLNKTKIFYNLKPTDSDYQTKQNEFGINSLGDIYSKYWNSLGEILTELERE 346

Query: 616  GMLVDREYLSEIEKVARAEQEAAVNRFRKWA-SKHCPDAKYMNVGSDTQLRQLLF----- 669
            GM VD +++  I+  A  + +     F KW  +    D    N  S  QL+QL F     
Sbjct: 347  GMQVDMDHVKNIKVKAEEDMKQYEQNFIKWVQTTQEGDVSQFNCSSTQQLQQLFFAPCKK 406

Query: 670  ----------------------GGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKF 707
                                  G K + + + E LP  + F++ N   ++ E ++TP K+
Sbjct: 407  QQVKKTPQTMKEEEEEDEYLSDGRKKSVRKEVEDLPEVKGFQIDNIHQIVKENQRTPLKY 466

Query: 708  RNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETE 767
              + ++ +G++ P   YT +G P    +ALK LA                   G  E+ +
Sbjct: 467  TEMLIKGLGIE-PLS-YTPSGMPQADYNALKQLA-------------------GDVEKQQ 505

Query: 768  YKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS 827
            Y G +  +       Q+  +AC AI+ L E+ SI+ L+  FI+PL    ++  +GR+H S
Sbjct: 506  Y-GLIYHHFAGKGEPQKGIDACIAINDLLELKSIEVLLHTFIIPL--IELTDPSGRIHTS 562

Query: 828  LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            +NINTETGRLS+R PNL NQPALEKDRYKIR++FIA  GN LIVADYGQLELR+LAH+  
Sbjct: 563  ININTETGRLSSRNPNLLNQPALEKDRYKIRKSFIAKKGNKLIVADYGQLELRVLAHMTK 622

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKDAFASERR 946
            CK+M+DAF  GGDFHSRT + M+PHI+  ++ G++L+EW   + K P PL+KD +A+ERR
Sbjct: 623  CKAMIDAFLKGGDFHSRTVITMFPHIQEEIDKGELLIEWDKSKGKAPAPLVKDKYAAERR 682

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
            KAK+LNFSIAYGKT  G A+DW+  V+EA+KT+D W+ +R+EV  WQ   +  ++     
Sbjct: 683  KAKVLNFSIAYGKTATGFAKDWQCEVKEAQKTIDAWFAQRKEVEQWQYNVRMIAKNQFFT 742

Query: 1007 HTLLGRARRFPA-IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
             TLLGR R      +  TRS  NH  RAAINTP+QG AAD+ + AM++I KN  LK+LG+
Sbjct: 743  QTLLGRYRYLEKYFQQQTRSYINHGLRAAINTPIQGGAADIVIAAMVKIYKNQSLKDLGY 802

Query: 1066 KLLLQV 1071
            KLLLQV
Sbjct: 803  KLLLQV 808


>gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  533 bits (1374), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 317/786 (40%), Positives = 445/786 (56%), Gaps = 87/786 (11%)

Query: 345  VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
            V +V N++ AK+V+ +L NKYK   HA DTE   IDVK ETP++ G +IC S ++GPE +
Sbjct: 51   VTIVRNINDAKRVIDIL-NKYKKQPHAWDTETIDIDVKSETPINRGRLICASAFAGPEVN 109

Query: 405  FGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHAD 464
            FGNG   +++D       DL+  F  +FED  I K+WHNY FD H+  N G+ V GF  D
Sbjct: 110  FGNGPR-LFIDNF-AQNSDLIMLFKDYFEDEKILKIWHNYGFDKHIFGNNGINVRGFFGD 167

Query: 465  TMHMARLWDSSRRTEGGYSLE--ALTGDRKVMSEDKKAYQKDMSKGN-TDE-----GFMG 516
            TMHMARL D S++ +  YSL   +L  + ++     K  +  ++K N TDE        G
Sbjct: 168  TMHMARLLDPSKQPQE-YSLAKLSLAYEEEIKLVKTKRMECLLAKPNLTDEERSSLQLFG 226

Query: 517  --------KISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINT 566
                    K SMK IFG+ K  K+G   K+     + ++    + +  W+ YS  DS  T
Sbjct: 227  DHLLDINLKTSMKQIFGQNKELKNGQVSKLKVYPKILQMHCLPQYINQWVEYSTLDSEIT 286

Query: 567  LKLYKSLKKKLLEMSWKLDGKPVPG-----------KSMFDFYQEYWQPFGEILVKMETE 615
              L  +LK  L +     + KP               S+ D Y +YW   GEIL ++E E
Sbjct: 287  YFLCLTLKDLLNKTKIFYNLKPTDSDYKTKQNEFGINSLGDIYSKYWNSLGEILTELERE 346

Query: 616  GMLVDREYLSEIEKVARAEQEAAVNRFRKWA-SKHCPDAKYMNVGSDTQLRQLLF----- 669
            GM VD +++  I+  A  + +     F KW  +    D    N  S  QL+QL F     
Sbjct: 347  GMQVDMDHVKNIKVKAEEDMKQYEQNFIKWVQTTQEGDVSQFNCSSTQQLQQLFFAPCKK 406

Query: 670  ----------------------GGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKF 707
                                  G K + + + E LP  + F++ N   ++ E ++TP K+
Sbjct: 407  QQVKKTPQTMKEEEEEDEYLSDGRKKSVRKEVEDLPEVKGFQIDNINQIVKENQRTPLKY 466

Query: 708  RNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETE 767
              + ++ +G++ P   YT +G P    +ALK LA                   G  E+ +
Sbjct: 467  TEMLIKGLGIE-PLS-YTPSGMPQADYNALKQLA-------------------GDVEKQQ 505

Query: 768  YKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS 827
            Y G +  +       Q+  +AC AI+ L E+ SI+ L+  FI+PL    ++  +GR+H S
Sbjct: 506  Y-GLIYHHFAGKGEPQKGIDACVAINDLLELKSIEVLLHTFIIPL--IELTDPSGRIHTS 562

Query: 828  LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            +NINTETGRLS+R PNL NQPALEKDRYKIR++FIA  GN LIVADYGQLELR+LAH+  
Sbjct: 563  ININTETGRLSSRNPNLLNQPALEKDRYKIRKSFIAKKGNKLIVADYGQLELRVLAHMTK 622

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKDAFASERR 946
            CK+M+DAF  GGDFHSRT + M+PHI+  ++ G++L+EW   + K P PL+KD +A+ERR
Sbjct: 623  CKAMIDAFLKGGDFHSRTVITMFPHIQEEIDKGELLIEWDKSKGKAPAPLVKDKYAAERR 682

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
            KAK+LNFSIAYGKT  G A+DW+  V+EA+KT+D W+ +R+EV  WQ   +  ++     
Sbjct: 683  KAKVLNFSIAYGKTATGFAKDWQCEVKEAQKTIDAWFAQRKEVEQWQYNVRMIAKNQFFT 742

Query: 1007 HTLLGRARRFPA-IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
             TLLGR R      +  TRS  NH  RAAINTP+QG AAD+ + AM++I KN  LK+LG+
Sbjct: 743  QTLLGRYRYLEKYFQQQTRSYINHGLRAAINTPIQGGAADIVIAAMVKIYKNQSLKDLGY 802

Query: 1066 KLLLQV 1071
            KLLLQV
Sbjct: 803  KLLLQV 808


>gi|323451403|gb|EGB07280.1| hypothetical protein AURANDRAFT_27651 [Aureococcus anophagefferens]
          Length = 831

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 327/753 (43%), Positives = 455/753 (60%), Gaps = 76/753 (10%)

Query: 345  VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
            V V D+V AA+ V+  L      + HA DTEV  ID+ +E PV +G V CF++YSGP+  
Sbjct: 75   VYVCDSVGAAEAVLARLEAADPAIYHAVDTEVDDIDLSREGPVGNGRVTCFTVYSGPDFS 134

Query: 405  F---GNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGF 461
            +     GK+ ++VD +D     +L+ FAP+F D S +KVWHNY FD HV+EN+GL   GF
Sbjct: 135  YDGEAAGKA-LFVDCVDAA---VLDVFAPWFADESRRKVWHNYGFDRHVVENHGLACRGF 190

Query: 462  HADTMHMARLWDSSR-RTEGG--YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKI 518
              DTMHMARL DSSR RT GG  YSLEAL+ D              +S G        K+
Sbjct: 191  AGDTMHMARLHDSSRLRTHGGDGYSLEALSRDL-------------ISAGE------AKV 231

Query: 519  SMKDIFGR--RKL----KKDGSAGKISTIAPVEELQREE----RELWISYSAFDSINTLK 568
            SMK +F    RK     + +GSA + +    ++ L+ +     R+ ++ Y+A+D+ +T +
Sbjct: 232  SMKALFPEFFRKTAFADRANGSASRDAARRGLDILRMQTDDATRDAFVCYAAYDAKSTWQ 291

Query: 569  LYKSLKKKLLEMSWK--LDGKP----VPGKSMFDFYQEYWQPFGEILVKMETEGMLVDR- 621
            ++ +L+++L   +W    D  P     P K+M+DFY+ Y+ PFG++L  ME  G+ VD  
Sbjct: 292  VHDALRRRLERQAWAPMTDDPPRSPETP-KTMWDFYERYFVPFGKVLTDMEAAGIYVDAA 350

Query: 622  EYLSEIEKVARAEQEAAVNRFRKWA-SKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSE 680
             +L+++EK A A++ AA+  FR WA  +  PD   +N  S  Q++ LLFGG  N K   E
Sbjct: 351  SHLTDVEKAATADKAAALKTFRDWAVERMGPDGALLNPASSKQIQTLLFGGAMNQKT-GE 409

Query: 681  SLPIERIFKVPNTEGVIAEGKKTPS-KFRNITLRSIGVDLPTEMYTATGWPSVGGDALKT 739
             L  ER F V     ++ +G    S + R + +RS+G+  PT+ YT +G PS   D L+ 
Sbjct: 410  YLETEREFDVDLPPELLPDGDDGASDRTRKLLVRSVGL-TPTK-YTTSGAPSCTADVLRE 467

Query: 740  LARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVC 799
            LA                        T+      + +  F       EAC A+ ALC + 
Sbjct: 468  LA---------------------GRPTDDPPVYGAAHAGFGGGPAGEEACVALDALCNMG 506

Query: 800  SIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQ 859
            SID++++ FI PL+   ++    RVHCSLN+NTETGRLS+RRPNLQNQPALEKD+Y IR+
Sbjct: 507  SIDTMLNTFINPLR--LLADDESRVHCSLNLNTETGRLSSRRPNLQNQPALEKDQYFIRK 564

Query: 860  AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
            AF A  G +L+VADYGQLELR+LAH+A C+SML AF+ GG FHSRTA+ M+ H+R AVE+
Sbjct: 565  AFRAKEGCALVVADYGQLELRLLAHVARCESMLVAFREGGCFHSRTAVGMFDHVREAVES 624

Query: 920  GQVLLE-WHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKT 978
            G VLLE     +    PL+KD +ASERR+AK LNFSIAYGKT  GLA+DW V  EEA+  
Sbjct: 625  GAVLLEKGSSPEDSDKPLVKDVYASERRRAKTLNFSIAYGKTAHGLAKDWGVKQEEAQDM 684

Query: 979  VDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTP 1038
            +  WY++R EV  WQ+    +++   +  TL+GR R  P I    R+ +    RAAINTP
Sbjct: 685  LRAWYDDRPEVEAWQKRTIADAKRTGYTTTLMGRRRNLPDILEKNRALQGRGARAAINTP 744

Query: 1039 VQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +QGSAADV M AML+I+++  LK+LG+ LLLQ+
Sbjct: 745  IQGSAADVVMMAMLKIAESKTLKDLGYTLLLQI 777


>gi|428172321|gb|EKX41231.1| hypothetical protein GUITHDRAFT_74910, partial [Guillardia theta
            CCMP2712]
          Length = 664

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/659 (42%), Positives = 386/659 (58%), Gaps = 72/659 (10%)

Query: 439  KVWHNYSFDNHVLENYGLKVSGFHA-DTMHMARLWDSSRRTEGGYSLEALTGDRKVMSED 497
            +++HN+SFD H+L N+G+++ G  + DT+HMARLWD+SR+  GGY L +L  D       
Sbjct: 2    QIFHNWSFDGHLLANHGIEILGHRSGDTVHMARLWDTSRQGRGGYKLSSLMQDL------ 55

Query: 498  KKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREER----E 553
                   +  G TD        MK++FGR KLKKDG+ GK+  +     LQ +      E
Sbjct: 56   -------LGWGKTD--------MKEVFGRFKLKKDGTPGKVVYLPDSLTLQTDPNVTMFE 100

Query: 554  LWISYSAFDSINTLKLYKSLKKKLLEMSWKLDG--------KPVPGKSMFDFYQEYWQPF 605
             WI YS +D+I T  LY SL+K+L  MSW  D         K    +++F FY  +W+PF
Sbjct: 101  KWIHYSTYDTICTWYLYFSLRKELENMSWSPDAIVYENELLKMRADRTLFTFYDCFWRPF 160

Query: 606  GEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLR 665
            G+IL  ME +GM +D++YL +  + A+ ++E     F +W    CPD KY+N+ S+ Q R
Sbjct: 161  GQILTDMERKGMYIDKDYLYQQAEKAQEDKEKRTESFMQWVRSLCPDGKYININSNPQKR 220

Query: 666  QLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKT------------PSKFRNITLR 713
             LLF       D     P  R F+V N      E ++             P   R+I+L 
Sbjct: 221  HLLFSSITEPDDAGSREPHMRTFQVDNKVEEEEEREEEEGEEGEVLFLSPPRSKRSISL- 279

Query: 714  SIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVA 773
             +G+ L    YTATG  S  G  ++ LA    A       A    D G  E         
Sbjct: 280  -LGLALTPVAYTATGQASTAGQVIQKLAGKPFASPPSYGTA--FKDLGGGE--------- 327

Query: 774  SNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTE 833
                      E + AC+A+++L E  +I+ L+S F+LPL     + +  R+H SLNINTE
Sbjct: 328  ----------EGKAACEALASLLEGEAIEKLLSTFLLPL--PEQTDEASRIHTSLNINTE 375

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS++RPNLQNQPALEKD Y++R+AF A PG  LI+ DYGQLELRI+A +  C+SMLD
Sbjct: 376  TGRLSSQRPNLQNQPALEKDVYRMRKAFSAPPGRKLIIVDYGQLELRIMAQMTGCRSMLD 435

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED-KPPVPLLKDAFASERRKAKMLN 952
            AF+ GGDFHSRTA++MY +I  AVE  +VLLEW+  D  PP P+LKD FASERRKAK LN
Sbjct: 436  AFEQGGDFHSRTAIDMYRYIAEAVERKEVLLEWNSHDGAPPAPMLKDKFASERRKAKTLN 495

Query: 953  FSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGR 1012
            F IAYG T + +ARDW VS+EEA++T+  WY+ R+EV  WQE   + +R   +  T LGR
Sbjct: 496  FGIAYGMTKMKVARDWGVSLEEAEETIQTWYSARKEVKQWQEEVIERARRTGYTETFLGR 555

Query: 1013 ARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             R  P I       R H ERAAINTP+QG AAD+ M AML++    R++ LGW++++Q+
Sbjct: 556  RRYLPEINGRDGVGRGHAERAAINTPIQGGAADIVMMAMLKLRGEERIRRLGWRMVMQI 614


>gi|300176838|emb|CBK25407.2| unnamed protein product [Blastocystis hominis]
          Length = 627

 Score =  484 bits (1246), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 278/624 (44%), Positives = 378/624 (60%), Gaps = 65/624 (10%)

Query: 466  MHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFG 525
            MHMARLW+SSR  +G YSLE+L+                      +E ++ K   K+IFG
Sbjct: 1    MHMARLWESSRVGKGSYSLESLS----------------------EELYIRKRPYKEIFG 38

Query: 526  RRKLKKDGSAGKISTIAPV----------EELQR--EERELWISYSAFDSINTLKLYKSL 573
            +  +K+DG  GK   + PV          ++LQR    R  WI YSAFD+  T  + K L
Sbjct: 39   KPHIKRDGMQGKTIDVPPVIVAFSLSPHPQDLQRGSATRSAWIDYSAFDAEATWHVRKEL 98

Query: 574  KKKLLEMSW---KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVD-REYLSEIEK 629
            +  L EM W    L+G  +   SM+DFY+ Y++ FG++LV ME  G+ VD   +L EIE+
Sbjct: 99   ESLLREMFWTSESLNGA-LSELSMWDFYRRYYRDFGQLLVNMERRGIHVDVARHLPEIER 157

Query: 630  VARAEQEAAVNRFRKWA-SKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIF 688
             ARA  E A N+F+ WA ++   D  +MNV S  Q++QLLF   P  +     LP ER F
Sbjct: 158  EARAALEKARNQFKSWAVAEGGSDLLFMNVHSTAQIQQLLFA--PGFRGGRAGLPREREF 215

Query: 689  KVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEY 748
             V NT G +  GKK P K R I +R +G+  P   +T  G P      ++ LA  I    
Sbjct: 216  SVENTTGFVEPGKKKPLKNRTILIRGLGI--PPISFTEKGLPQCNAATIQELAGKI---- 269

Query: 749  DCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNF 808
                      D    E++E+  A  +           + AC A++AL  V SI+++++ F
Sbjct: 270  ----------DEENVEKSEFGKAFEA----LGGGDRGKAACLALNALSRVNSIETMLNTF 315

Query: 809  ILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            ILPLQ  +V+    RVHCSLN+NTETGRLS+R PNLQNQPALEKD Y IR+AF+A PGN 
Sbjct: 316  ILPLQ--SVADAEQRVHCSLNLNTETGRLSSRNPNLQNQPALEKDVYFIRKAFMAKPGNI 373

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-H 927
            L+V+DYGQLELR+LAH+  CK+M++AF+ GGDFHSRTA++MY +I+  +  G  LLEW  
Sbjct: 374  LLVSDYGQLELRVLAHMTKCKAMIEAFRLGGDFHSRTALSMYDYIKEDIAKGTCLLEWDS 433

Query: 928  GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
             + +PP PLLK  +ASERR+AK+LNFS+AYGKT  GL +D+ VS+EEAK+ +  WY ER 
Sbjct: 434  SKGEPPAPLLKHKYASERRQAKILNFSLAYGKTAHGLQKDFGVSLEEAKEVLAKWYKERP 493

Query: 988  EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
            EV  WQE   + ++      TL+GR R  P I S  + +  H  RAAINTP+QG AAD+ 
Sbjct: 494  EVKRWQELTIQTAKETGFTRTLMGRYRPLPDINSKNKWKEGHACRAAINTPIQGGAADIV 553

Query: 1048 MCAMLEISKNARLKELGWKLLLQV 1071
            M AML+I K+ RL+ LG+++LLQ+
Sbjct: 554  MMAMLKIEKDERLRRLGFEMLLQI 577


>gi|115475033|ref|NP_001061113.1| Os08g0175600 [Oryza sativa Japonica Group]
 gi|113623082|dbj|BAF23027.1| Os08g0175600, partial [Oryza sativa Japonica Group]
          Length = 570

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/353 (65%), Positives = 278/353 (78%), Gaps = 23/353 (6%)

Query: 322 ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
           ++E++N+ KL      LA+ Y  V+VVDNV +A+ VV +LT KYK  +HACDTEVA IDV
Sbjct: 237 STESKNARKL------LATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDV 290

Query: 382 KQETPVDHGEVICFSIYSG---PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
           K+ETPV HGEVICFSIYSG    EADFGNGK+CIWVD+LDGG RD+L EFAPFFEDPSIK
Sbjct: 291 KEETPVGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGG-RDVLMEFAPFFEDPSIK 349

Query: 439 KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
           KVWHNYSFD+HV+EN G+KV+GFHADTMH+ARLWDSSRR +GGYSLE LT D ++M+   
Sbjct: 350 KVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMN--- 406

Query: 499 KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
            A  KD+ K        GK+SMK IFGR+ ++K+GS GK  +I PV++LQRE+RELWI Y
Sbjct: 407 -AVLKDIHK-------TGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDRELWICY 458

Query: 559 SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
           S+ DS++TLKLY+SLK KL    W  DG   P  +M+DFY+EYW+PFG +LVKMETEGM 
Sbjct: 459 SSLDSMSTLKLYESLKNKLEAKEWIFDG--CPRGTMYDFYEEYWRPFGALLVKMETEGMF 516

Query: 619 VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGG 671
           VDR YLSEIEK A  E++ A ++FRKWASKHCPDAKYMNV SD Q+RQL FGG
Sbjct: 517 VDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGG 569


>gi|168037310|ref|XP_001771147.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677527|gb|EDQ63996.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1042

 Score =  468 bits (1203), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/421 (54%), Positives = 302/421 (71%), Gaps = 17/421 (4%)

Query: 342  YSN--VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
            +SN  VMVVD+V  A  VV  L +KYK +VHACDTEV +IDVK E+PV HG + CFSIY 
Sbjct: 604  FSNDLVMVVDSVEKASMVVEHLMSKYKDVVHACDTEVTEIDVKNESPVGHGRITCFSIYC 663

Query: 400  GPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVS 459
            GP ADFG+GK+ +W+D+LDGG  D+L  F  +FE PSIKKVWHNYSFD HVL  +G+   
Sbjct: 664  GPTADFGDGKNRLWIDVLDGG-EDVLKVFKRYFESPSIKKVWHNYSFDKHVLGRHGIHPQ 722

Query: 460  GFHADTMHMARLWDSSRR-TEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFM-GK 517
            GFHADT+H+ARL+DS+RR  +GGYSLE L+ D KVM      Y +  ++   DE  + GK
Sbjct: 723  GFHADTIHLARLYDSARRGAKGGYSLEVLSADEKVMD----GYIRHSTE--VDESVLAGK 776

Query: 518  ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREE--RELWISYSAFDSINTLKLYKSLKK 575
             SMK++FG+  LKKDG+ GKI TI PV ELQR+E  R+ WI YS FD++ T +L+ SL++
Sbjct: 777  KSMKELFGKANLKKDGTPGKIKTIPPVHELQRDEELRDAWIYYSTFDAVCTWRLFLSLQQ 836

Query: 576  KLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQ 635
            KL    W +      G SM+DFY++YW+PFGE+LV+ME +GMLVD  +L+ +EKVA+A+Q
Sbjct: 837  KLSSTPWNVADLKKKG-SMYDFYEKYWRPFGEVLVQMEADGMLVDCNHLATVEKVAKAQQ 895

Query: 636  EAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEG 695
            E +V+RFRKWA+K+C DA  MNVGSD Q+RQ L+GG  N KD  + LP+ER+F VPNT+G
Sbjct: 896  EISVSRFRKWAAKYCADAAQMNVGSDAQIRQFLYGGTANRKDKDQVLPMERVFSVPNTDG 955

Query: 696  VIAEGKKTPSKFRNIT---LRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVD 752
             I EGKK   K + I    L + G+ LP E YT++GWP+VGG A+K LA  ++ +Y  ++
Sbjct: 956  FIEEGKKVAKKTKPIVISGLANFGIKLPVETYTSSGWPAVGGAAIKVLAGKVAIDYSALE 1015

Query: 753  G 753
             
Sbjct: 1016 A 1016


>gi|340500466|gb|EGR27340.1| hypothetical protein IMG5_197550 [Ichthyophthirius multifiliis]
          Length = 876

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/607 (39%), Positives = 339/607 (55%), Gaps = 80/607 (13%)

Query: 517  KISMKDIFGRRKLKKDGSAGKISTIAPVEELQREEREL--WISYSAFDSINTLKLYKSLK 574
            K +MK +F ++K  KDG  GK      V  +  +   +  W++YSA D+  T  LY+ L 
Sbjct: 248  KTNMKQLFAKKKYLKDGREGKTLEFPTVIRMHSDTELINNWVNYSALDAEVTFFLYQVLM 307

Query: 575  KKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAE 634
             KL E+    +      K+M D Y +YW PFGE+L  +E +G  ++ ++L  I+  A  +
Sbjct: 308  TKLQELETNFENM----KNMKDLYHKYWLPFGELLTDLERKGFEINIQHLENIQVKANED 363

Query: 635  QEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGG---KPNSK--------------- 676
                  +F  W +   P  +  N  S  QL+ L F      P +K               
Sbjct: 364  IINYQKQFLDWVTHIQPQLEQFNPSSVQQLQHLFFAPFKRVPQAKAKGKKSLSILTEKEQ 423

Query: 677  --------DDSES---------------------LPIERIFKVPNTEGVIAEGKKTPSKF 707
                    DD E                      +P ++IFKV N + V+  GKK P K 
Sbjct: 424  NDINTIYEDDKEGEDNSGYHSDGRKKAVRQIIDEIPQKKIFKVLNIKNVLEIGKKRPLKH 483

Query: 708  RNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETE 767
             ++ +  +G+   +  YT TG P+V    LK LA                   G  E  +
Sbjct: 484  TDMEIEGLGLQAIS--YTETGMPAVDLPVLKILA-------------------GNPENGD 522

Query: 768  YKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS 827
            + G +    +    E+ A++A  +I AL ++   ++L+  FI+PL+ +  + KN R+HCS
Sbjct: 523  F-GKIGEFYRKQGQEELAQKASKSIQALIQLKQTETLLQTFIIPLRET--ADKNNRIHCS 579

Query: 828  LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            LNINTETGR+SAR+PNL NQPAL+KD YKIR AF A  GN LIVADYGQLELRILAH+  
Sbjct: 580  LNINTETGRISARKPNLLNQPALDKDVYKIRSAFQASKGNKLIVADYGQLELRILAHMTK 639

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKDAFASERR 946
            CK+MLDAF  GGDFHSRTAM MYP I+  +E G++LLEW   +  PP PLLKD ++SER+
Sbjct: 640  CKAMLDAFHKGGDFHSRTAMTMYPEIKKEIEEGKLLLEWDKNKGSPPAPLLKDKYSSERK 699

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
            KAKM+NFSIAYGK+  G ++DW  S++EA++T++ W++ERQEV TWQ   K  +      
Sbjct: 700  KAKMMNFSIAYGKSAHGFSKDWGCSLQEAQETLEKWFSERQEVKTWQTKTKNIALEKGCS 759

Query: 1007 HTLLGRARRFPAIKSLTR--SQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELG 1064
             TL+GR R    + +     S  +H  RAAINTP+QG AAD+ + AM++I +N  +KELG
Sbjct: 760  QTLMGRYRNLAKLLNSKSPDSIASHGLRAAINTPIQGGAADLVIAAMVKIQQNQEIKELG 819

Query: 1065 WKLLLQV 1071
            ++L+LQ+
Sbjct: 820  YELVLQI 826



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 77/128 (60%), Gaps = 3/128 (2%)

Query: 361 LTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGG 420
           L    K  VHA DTE   ID+K E+ V +G++IC S Y G + DFGNG   +++D     
Sbjct: 31  LLQSLKDRVHAWDTETIDIDLKTESAVGNGKIICASAYCGLDVDFGNGPR-LFIDNF-AQ 88

Query: 421 GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEG 480
             +L+N F  + ED   KKVWHNY FD H+  N+G+ V GF  DTMHM RL D SR  + 
Sbjct: 89  NTNLINIFKEYLEDEKYKKVWHNYGFDRHIFYNHGINVKGFGGDTMHMTRLIDPSRGPK- 147

Query: 481 GYSLEALT 488
            YSL +++
Sbjct: 148 EYSLSSIS 155


>gi|387192342|gb|AFJ68650.1| DNA polymerase I [Nannochloropsis gaditana CCMP526]
          Length = 470

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/374 (53%), Positives = 251/374 (67%), Gaps = 28/374 (7%)

Query: 699  EGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLD 758
            E +K   K+ N+T+  +G  L  E +TA G P+V    L+ LA N S             
Sbjct: 70   ETQKKARKYINLTIHGLG--LTPETFTAAGAPAVSAAVLRKLAGNPS------------- 114

Query: 759  DSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVS 818
                      +G   S  K F   +E  EAC A+ ALC + SID+++SNF+LPLQ  +++
Sbjct: 115  ----------EGVWGSAYKHFNEGKEGEEACVALDALCAMGSIDTMLSNFLLPLQ--DLA 162

Query: 819  GKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
              + RVHCSLN+NTETGRLSARRPNLQNQPALEKD+YKIR+AF++ P  SLIVADYGQLE
Sbjct: 163  DDDSRVHCSLNLNTETGRLSARRPNLQNQPALEKDQYKIRKAFVSEPNQSLIVADYGQLE 222

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLL 937
            LR+LAH+  C+SM+ AFK GG FHSRTA+ M+ H+R AVE+G+VLLEW + + KPP PLL
Sbjct: 223  LRLLAHITKCQSMIQAFKEGGCFHSRTAVGMFEHVRKAVESGEVLLEWDYAKGKPPAPLL 282

Query: 938  KDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARK 997
            KD F SERRKAK LNFSIAYGKT  GL++DW VS +EA+  ++ WY +R EV  WQE   
Sbjct: 283  KDKFGSERRKAKTLNFSIAYGKTAFGLSKDWGVSTKEAEAMLEAWYADRPEVKEWQEKAI 342

Query: 998  KESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKN 1057
             E+   +   TL+GR R+ P I S T   + H ERAAINTP+QG AADV M AML I  +
Sbjct: 343  AEAHRTSRTKTLMGRYRKLPEINSRTLRFQRHAERAAINTPIQGGAADVVMMAMLRIHNS 402

Query: 1058 ARLKELGWKLLLQV 1071
              L  LGWKLLLQ+
Sbjct: 403  QVLARLGWKLLLQI 416


>gi|118362992|ref|XP_001014571.1| DNA polymerase I family protein [Tetrahymena thermophila]
 gi|89296488|gb|EAR94476.1| DNA polymerase I family protein [Tetrahymena thermophila SB210]
          Length = 988

 Score =  357 bits (915), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 182/421 (43%), Positives = 274/421 (65%), Gaps = 42/421 (9%)

Query: 670  GGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGW 729
            G K + + + + +P  + FKV N +G+I EGKK P K  ++ +  +G+++ +   T +G 
Sbjct: 541  GRKKSVRKEEDDIPQTKAFKVLNIKGIIPEGKKKPPKQLDMNITGLGLEVIS--LTDSGM 598

Query: 730  PSVGGDALKTLARNIS-AEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFAT------- 781
            P+     LK LA N     Y  +                  G +  NN++ A        
Sbjct: 599  PAADLPVLKILAGNPKKGNYGAI------------------GKLLKNNQLAAKVYNQIGE 640

Query: 782  -------EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTET 834
                   E+  + A  AI +L ++  +++L++ FI+PL+   ++ K+GR+HCSLN+NTET
Sbjct: 641  YYKQKGDEEMGKRASHAIESLIQLKQVETLLTTFIIPLR--ELADKDGRIHCSLNMNTET 698

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GR+SAR+PNL NQP+ +KD YKIR AF A  GN LIVADYGQLELRILAH+ NCK+M++A
Sbjct: 699  GRISARKPNLMNQPSHDKDVYKIRSAFQAGKGNKLIVADYGQLELRILAHMTNCKAMIEA 758

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKDAFASERRKAKMLNF 953
            FK GGDFHSRTAM MYP ++  +E G++LLEW   + +PP PLLKD ++SER+KAKM+NF
Sbjct: 759  FKMGGDFHSRTAMGMYPKLKEEIEKGELLLEWDKSQGEPPAPLLKDKYSSERKKAKMMNF 818

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
            SIAYGK+  G ++DW  S++EA++ +D W+ +R+EV  WQE  KK +    +  T++GR 
Sbjct: 819  SIAYGKSAHGFSKDWNCSMKEAQEALDAWFADRKEVKEWQENTKKIALEHGYTQTMMGRY 878

Query: 1014 RRFPAIKSLTRSQRNHIE---RAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQ 1070
            R    + + ++S R+ ++   RA+INTP+QG AAD+ + AM+++S++ +L ELG+KLLLQ
Sbjct: 879  RNLERL-THSKSARHLVQHGLRASINTPIQGGAADLVIAAMVKVSQDPKLNELGYKLLLQ 937

Query: 1071 V 1071
            +
Sbjct: 938  I 938



 Score =  113 bits (282), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 97/191 (50%), Gaps = 16/191 (8%)

Query: 307 NPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYS---------NVMVVDNVSAAKKV 357
           NP N    G    K      +SE L     K  +FY+            +V N   A KV
Sbjct: 26  NPSNSQVLGDYVIKSKMSGHSSENL---YEKYKNFYNVQIEKINIPGTTIVKNRDQAHKV 82

Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL 417
           V +L +   +  HA DTE   +D K E+P+  G++IC S + G + DFGNG   +++D  
Sbjct: 83  VKILKS-LPNREHAWDTETIDVDAKLESPIGKGKIICASAFCGIDVDFGNGPR-LFIDNF 140

Query: 418 DGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
                DL+  F  + ED   KK+WHNY FD H+  N+G+ V GF  DTMH+ARL D SR 
Sbjct: 141 -AQNTDLIQIFKEYLEDSRYKKIWHNYGFDRHIFYNHGINVQGFGGDTMHLARLADPSRG 199

Query: 478 TEGGYSLEALT 488
            +  YSL  +T
Sbjct: 200 PK-EYSLANVT 209



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 6/156 (3%)

Query: 517 KISMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLK 574
           K +MK +FG++K  KDG  GK         +    E  E W+ YS  D+  T  +++ LK
Sbjct: 301 KTNMKQLFGKKKYLKDGKEGKTIEFPNTIRMHTDPELLEKWVHYSCLDAEITFFVFQVLK 360

Query: 575 KKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAE 634
            +L  +S   +      K+M D Y +YW+PFGEIL  +E  G  ++ E+L +I   A  +
Sbjct: 361 DELKSLSTNFEDM----KNMLDLYNKYWKPFGEILTDLERRGFELNLEHLDKIRVQAEND 416

Query: 635 QEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
                 +F  W        +  N  S  QL+QL F 
Sbjct: 417 MIKLEKQFLDWVCSTQQGLEQFNYSSAQQLQQLFFA 452


>gi|294887455|ref|XP_002772118.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239876056|gb|EER03934.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 940

 Score =  347 bits (891), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 242/768 (31%), Positives = 381/768 (49%), Gaps = 98/768 (12%)

Query: 371  ACDTEVAKIDVKQETPV-DHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFA 429
            A DTE   +++ + TP    GE++C + + G + DFG+G   ++VD   G  R +L+ F 
Sbjct: 148  AWDTEFWNVELTRNTPAHSSGELLCLTAFGGGKLDFGSG-PLLFVDC-KGPSRHVLDLFR 205

Query: 430  PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSS-------------- 475
             +FE+P+ +K++HN++ D HVL  +G+ V G  ADT ++ARL+DSS              
Sbjct: 206  SYFENPAKRKIFHNFAADAHVLYGHGITVRGLEADTRYLARLFDSSLSSWEDQVQPEKPP 265

Query: 476  ---RRTEGGYSLEALT---GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKL 529
               R+++   + EAL    GD  + S      ++    G   +G+  K  +  +FG    
Sbjct: 266  LLLRKSKTSTTKEALIDEGGD--IFSTPLNDCEQHSGPG---KGYQLK-RLVSLFGIAPK 319

Query: 530  K----KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW--K 583
            +    K+  AG++           E+   W+ Y+A D+  T  LY+ L   L    W  +
Sbjct: 320  EPPSFKEKFAGRLGIGGLEAHCSEEKFGEWLKYAADDAYFTFMLYRRLTDTLRGQEWCTE 379

Query: 584  LDGKPV--------------------PGKSMFDFYQEYWQPFGEILVKMETEGMLVDREY 623
            L  +P+                     G SM DF  ++++PF E+LV++E  G   +REY
Sbjct: 380  LHWQPIREKIRHGTTTFNGMNDPETYTGLSMSDFAVKFYRPFTELLVEIERRGFGANREY 439

Query: 624  LSEIEKVARAEQEAAVNRFRKWASKH--------CPDAKYMNVGSDTQLRQLLFGGKPNS 675
            L +    A+A+ +   + FR  A            P A+++N  S  Q+RQLLFG  P+ 
Sbjct: 440  LIQQLTAAQADLQRHKDAFRTIAQSLKDRRGQPLNPQAEFINPRSAKQIRQLLFG-NPDE 498

Query: 676  KDDSESLPIERIFKVPNTEGV--IAEGKKTPSKFRNITLRSIGVDLPTEMY--------T 725
             D    +   R+      E +    E    PS      ++ +G+     +Y         
Sbjct: 499  PDHLRWV-ARRVRAGEEAEWIQPFMEFPTAPSSKHRFIVKGLGLQPIAYLYGRERLSNYA 557

Query: 726  ATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEA 785
             +GWP V    L+  A                   G   E  Y  A      +   E  A
Sbjct: 558  PSGWPKVESAILRAFA-------------------GEPHEGNYGVAYQQLEPVRGHEHAA 598

Query: 786  REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNG--RVHCSLNINTETGRLSARRPN 843
               C  +  L     I + I++ + PL       ++G  R+H SL ++T TGRL  R+PN
Sbjct: 599  -SVCRLLWHLQRSIRISAAITSVLSPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPN 657

Query: 844  LQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
            LQN P+   D Y IR+AF A PGN+LIV DY QLELRILAH++ C+SM+     GGD HS
Sbjct: 658  LQNPPSAHNDLYSIRKAFSARPGNTLIVGDYSQLELRILAHMSRCESMIRQLNQGGDIHS 717

Query: 904  RTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVG 963
            + A++++P +  AV  G V+++   E  P +P +K  F+++R++AK++NFSIAYGKT   
Sbjct: 718  QCAVDLFPEVAEAVANGSVVID-DAEAHPGIPSVKTKFSTQRQQAKVMNFSIAYGKTERT 776

Query: 964  LARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLT 1023
            LA +  + V + +     W N ++ V  W+    +++R   H  ++LGR RRFP IK   
Sbjct: 777  LAEEMDLPVTDIRDMFTRWNNSKKGVERWKAEIIQQARDTQHATSVLGRHRRFPHIKHRL 836

Query: 1024 RSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R      ERAA+N  +QGSAAD+AM AML + ++ RL+ +G+K+++QV
Sbjct: 837  RKYSGRSERAAVNFVIQGSAADIAMMAMLRVDRDERLRRMGFKIVMQV 884


>gi|397615480|gb|EJK63460.1| hypothetical protein THAOC_15874 [Thalassiosira oceanica]
          Length = 676

 Score =  345 bits (884), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 186/377 (49%), Positives = 257/377 (68%), Gaps = 25/377 (6%)

Query: 696  VIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAH 755
            V A+ ++ P K+ ++T+ S+G+ +P + +T  G PS   D L+ LA +  A+      A+
Sbjct: 270  VKAKNEEEP-KWVDVTITSLGM-VP-DKFTVGGAPSATADVLRGLAGDPFADPPKYGKAY 326

Query: 756  DLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGS 815
            +          E K A + ++           AC A  +L  + SID++I+NF+  LQ +
Sbjct: 327  EF--------FEAKKAGSGHD-----------ACVAFYSLTAIGSIDTMIANFLTSLQ-A 366

Query: 816  NVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
             V  +N RVH S+NINTETGRLS+R+PNLQNQPALEKD+YKIRQAFIA PGN LIVADYG
Sbjct: 367  LVDDRN-RVHNSININTETGRLSSRKPNLQNQPALEKDKYKIRQAFIASPGNRLIVADYG 425

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPV 934
            QLELR+LA + NC SM++AFKAGGDFHSRTA++M+ +I++AVE+G+V+LEW +   +P  
Sbjct: 426  QLELRLLASMTNCVSMIEAFKAGGDFHSRTALDMFKYIQDAVESGEVILEWDYANGEPTK 485

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            P++KD +ASERR AK LNFSIAYGKT  GL++DW VS +EA+  +  WY+ R EV  WQ+
Sbjct: 486  PMVKDKYASERRNAKTLNFSIAYGKTAHGLSQDWGVSKKEAEGLLQAWYDSRPEVEKWQK 545

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              K  ++ +    TL+GR R  P  +  +  Q  H  RA+INTP+QG AADVAM AM++I
Sbjct: 546  TAKDTAKKEGTTRTLMGRYRHLPHARGGSMKQLGHALRASINTPIQGGAADVAMMAMIKI 605

Query: 1055 SKNARLKELGWKLLLQV 1071
            + + +LK LGW LL+QV
Sbjct: 606  NNSEKLKRLGWILLMQV 622



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 4/117 (3%)

Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC-PDAKYMNVGSD 661
           +PFGE+L  ME  G+L+  +YL+ +E  AR ++   V  FR+WA++   PD   MN+GS 
Sbjct: 2   RPFGELLTDMERRGILIATDYLAGVEVQARKDRVEHVETFRQWAAEQIGPDGLAMNLGSS 61

Query: 662 TQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVD 718
           TQL   LFGG  N K    S  ++R+F+    E  I +      + R+  LR    D
Sbjct: 62  TQLSTFLFGGAANPKTKEHS-EVQRVFRTKREE--IPDDAMEAYRERDAKLRETAPD 115


>gi|299116518|emb|CBN74706.1| pol1-like DNA polymerase [Ectocarpus siliculosus]
          Length = 1473

 Score =  343 bits (879), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 180/354 (50%), Positives = 239/354 (67%), Gaps = 26/354 (7%)

Query: 705  SKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTE 764
            +K+R +T+ S+ +  PT++ TA G P+V  D L  LA N                    E
Sbjct: 1077 TKYRELTISSVNMK-PTKV-TAAGSPAVSMDVLNHLAGNPH------------------E 1116

Query: 765  ETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRV 824
            +    GA   +   F    E +EAC+A+ ALC + S+D+++SNF+ PLQ   +  +  RV
Sbjct: 1117 DPPKYGAAYGH---FGGGLEGKEACEALYALCNMGSVDTMVSNFLQPLQ--ELVDEKSRV 1171

Query: 825  HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAH 884
            HCSLN+NTETGRLSAR+PNLQNQPALEKD+YKIR AF A  GN+L+VADYGQLELR+LAH
Sbjct: 1172 HCSLNLNTETGRLSARKPNLQNQPALEKDQYKIRAAFRAEEGNTLVVADYGQLELRLLAH 1231

Query: 885  LANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW-HGEDKPPVPLLKDAFAS 943
            + +CKSM+ AFK GG FHSRTA+ M+ H++ AV+ G+VLLEW + + +PP PL+KD FAS
Sbjct: 1232 ITDCKSMITAFKEGGCFHSRTAVGMFDHVKEAVDKGEVLLEWDYSKGEPPKPLVKDVFAS 1291

Query: 944  ERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRID 1003
            ERR+AK LNFSIAYGKT  GL +DW V+++EA+  V  WY +R EV  WQ+   + ++  
Sbjct: 1292 ERRQAKTLNFSIAYGKTGHGLFKDWGVTLKEAEDLVKAWYADRPEVKRWQKQVIQNAKDT 1351

Query: 1004 NHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKN 1057
                TL+GR R+ P I S  R +  H  RAAINTP+QG AADVAM AM+ I ++
Sbjct: 1352 GFSRTLMGRYRKLPDITSNDRGKVGHGTRAAINTPIQGGAADVAMVAMIGIVRS 1405



 Score =  253 bits (647), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 150/361 (41%), Positives = 204/361 (56%), Gaps = 42/361 (11%)

Query: 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA 403
            V +V     A+KVV +L +      +ACDTEV++I++K   PV HG V C SIY GP+ 
Sbjct: 624 GVQIVAGREKARKVVKILMDN-PDAFYACDTEVSEINLKDHGPVGHGRVTCISIYGGPDL 682

Query: 404 DFGNGKSCI-WVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL-------ENYG 455
           DFG G   I WVD L G     L EF PFF     KKVWHNY FD HV+       E   
Sbjct: 683 DFGEGPGKILWVDNL-GAAAGTLEEFLPFFASEKHKKVWHNYGFDRHVMFNSPDNREEQR 741

Query: 456 LKVSGFHADTMHMARLWDSSRRT---EGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDE 512
           +   GF  DTMHMARLWD+S      + G+SLEAL+   K++ E ++             
Sbjct: 742 IDCVGFAGDTMHMARLWDTSMEKYAGDTGFSLEALS--LKLLGEGQR------------- 786

Query: 513 GFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLY 570
               K  MK++FG  KLKKDG+ G +  + P++E+Q   E R  +I YSA+D+  T  ++
Sbjct: 787 ----KTPMKELFGIPKLKKDGTPGNLLVLPPIDEIQTRPEVRPRFIEYSAYDAQATWLVH 842

Query: 571 KSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVD-REYLSEIEK 629
           + L +KL EMSWK       G +M DFY+ Y+ PFGE+L  ME  G+ V+ ++YL +IE 
Sbjct: 843 RELMQKLREMSWK------DGMTMLDFYEMYYVPFGELLTDMERTGIYVEAKDYLQDIEV 896

Query: 630 VARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFK 689
            AR +++ A   F  W  K  P A+ +N  S TQ++ LLFGG  N K   E LP+ R+FK
Sbjct: 897 QARNDKKKAEETFLNWVKKIQPGAETLNPSSSTQIQTLLFGGATNPK-TKEKLPVRRVFK 955

Query: 690 V 690
           +
Sbjct: 956 I 956


>gi|428166784|gb|EKX35753.1| hypothetical protein GUITHDRAFT_79451 [Guillardia theta CCMP2712]
          Length = 825

 Score =  323 bits (827), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 195/523 (37%), Positives = 278/523 (53%), Gaps = 60/523 (11%)

Query: 345 VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSG--PE 402
           V   ++  AA +V  ++  + + ++ ACDTE   +D   E+PV+ G   CFS+Y G    
Sbjct: 72  VRTEEDARAALEVTRLMQKRMEKIIFACDTETYGVDPTVESPVEKGSCACFSLYGGRYTT 131

Query: 403 ADFGNGKSC-IWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGF 461
           A  G GKS  +WV+ L   G  +L  F  +FED   KK++HN+SFD+H+L N+G+ V GF
Sbjct: 132 ARRGKGKSNRLWVNTLGEEGEKVLAVFKVWFEDERFKKIFHNWSFDSHILRNHGITVRGF 191

Query: 462 HADTMHMARLWDSSRRTEG-GYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISM 520
             DT+HMARLWD+SR + G GY L  L+                    N   G+ GK  M
Sbjct: 192 AGDTIHMARLWDASRLSTGKGYKLSVLS--------------------NELLGW-GKTEM 230

Query: 521 KDIFGRRKLKKDGSAGKISTIAPVEELQREER----ELWISYSAFDSINTLKLYKSLKKK 576
           K++F  RKLKKDG+ GK+  +     +Q ++       W+ YS +DS+ T  LY  L+K+
Sbjct: 231 KEVFSVRKLKKDGTPGKVLILRDSCSIQTDDDPKIFRKWVHYSTYDSLCTWYLYYKLRKE 290

Query: 577 LLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQE 636
           L EMSW     P     MF FY+ +W+PFGEIL  +E  G+ +DR+YL +    A  ++E
Sbjct: 291 LEEMSW----SPDLLLCMFQFYERFWKPFGEILTDIERTGIFIDRDYLRQQAAAAERDKE 346

Query: 637 AAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIE--RIFKVPNTE 694
             +  FR+W  K CPD  YMN  S+   + LLF  K       E    E  + F + NTE
Sbjct: 347 EKLAGFRRWVGKLCPDGIYMNTRSNLHKKHLLFSSKRGLAKAVEEAEEEHYKTFTIDNTE 406

Query: 695 GVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGA 754
           G + EG+  P   R I L+ +G  L    YT  G  S  G  + TLA    A        
Sbjct: 407 GFLEEGRSEPRATREIRLKGLG--LSPVSYTPAGQASTSGSVISTLAGKPFA-------- 456

Query: 755 HDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQG 814
                    +   Y  A     K        +E C+A+  L E  +++ L+S F++PL  
Sbjct: 457 ---------DPPRYGTAF----KDLGEGDFGKEVCEALGFLLESENVEKLLSTFLIPL-- 501

Query: 815 SNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKI 857
             ++ ++GR+H +LN+NTETGRLS++RPNLQNQPALEKD YK+
Sbjct: 502 PEMTDQHGRIHTALNLNTETGRLSSKRPNLQNQPALEKDVYKV 544



 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 75/110 (68%)

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
            VGLA+DW V+ +EA++T+  WYN R+EV  WQE  KK++R   +  TLLGR R    ++S
Sbjct: 651  VGLAKDWGVTQKEAQETIKAWYNARKEVQDWQEGVKKKARRVGYTETLLGRRRNLADMRS 710

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
                 R H ERAAINTP+QG AADV + AML I +N  ++  GWK++LQ+
Sbjct: 711  NNTVLRGHAERAAINTPIQGGAADVVVMAMLNIWRNEEIRARGWKMVLQI 760


>gi|341609973|gb|AEK81399.1| RxL467 [Phytophthora sojae]
 gi|341609975|gb|AEK81400.1| RxL467 [Phytophthora sojae]
 gi|341609977|gb|AEK81401.1| RxL467 [Phytophthora sojae]
 gi|348687651|gb|EGZ27465.1| hypothetical protein PHYSODRAFT_284102 [Phytophthora sojae]
          Length = 471

 Score =  300 bits (768), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 176/421 (41%), Positives = 241/421 (57%), Gaps = 46/421 (10%)

Query: 345 VMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEAD 404
           V ++ +   A++V+  +        HACDTEVA+IDVK   PV +G V C S+YSGP+ D
Sbjct: 63  VNLIQDEEGARRVLAKIRELGPGHFHACDTEVAQIDVKAVGPVGNGVVTCLSLYSGPDVD 122

Query: 405 FGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHAD 464
           +GNG   +WVD LD      L  F  F E     KVWHNYSFD HVL N+G+ V G   D
Sbjct: 123 YGNG-PYVWVDNLDSA-EGTLQLFKDFLESREYLKVWHNYSFDRHVLYNHGINVQGLGGD 180

Query: 465 TMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIF 524
           TMHMARLW+++R   GGYSLEALT D  ++ + KK                    MK++F
Sbjct: 181 TMHMARLWNTARFQHGGYSLEALTAD--LLLQRKK-------------------PMKELF 219

Query: 525 GRRKLKKDGSAGKISTIAPVEELQR--EERELWISYSAFDSINTLKLYKSLKKKLLEMSW 582
           G  KL+KDGS GK   +  VEELQR  E R+ WI YS +D+ +T  L++ L+ KL +  W
Sbjct: 220 GIPKLRKDGSKGKERIMPTVEELQRFPEFRKRWIRYSVYDAESTWFLHRVLQHKLDQTFW 279

Query: 583 ------------------KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL 624
                              +D +P  G SM+DFY++Y   FGE L  +E +GM VD EYL
Sbjct: 280 FENAPKTNAAVNAAAAAAAVDEEPQTG-SMYDFYRQYIILFGECLTDIERKGMHVDLEYL 338

Query: 625 SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPI 684
           + +EK A  ++        KWAS++C +++ +N+ S  Q +QLLF    + K   + LP 
Sbjct: 339 AGVEKQALEDRARLERLVLKWASRYCDESERINLYSAAQKQQLLFAPYYDEKKKKQVLPA 398

Query: 685 ERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNI 744
           ER F+V NTEG I EGK+ P K RN+T+R +G+  P   +TA+G P+   + LK LA N+
Sbjct: 399 ERAFEVENTEGFIEEGKQKPKKKRNMTIRGLGI--PPTHFTASGLPAASAEVLKELAGNV 456

Query: 745 S 745
           S
Sbjct: 457 S 457


>gi|294892786|ref|XP_002774233.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239879450|gb|EER06049.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 842

 Score =  272 bits (696), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 206/696 (29%), Positives = 319/696 (45%), Gaps = 110/696 (15%)

Query: 371  ACDTEVAKIDVKQETPV-DHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFA 429
            A DTE   +++ + TP    GE++C + + G + DFG+G   ++VD   G  R +L+ F 
Sbjct: 96   AWDTEFWNVELTRNTPAHSSGELLCLTAFGGGKLDFGSG-PLLFVDC-KGPSRHVLDLFR 153

Query: 430  PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRT------EGGYS 483
             +FE+P+ +K++HN++ D HVL  +G+ V G  ADT ++ARL+DSS  +           
Sbjct: 154  SYFENPAKRKIFHNFAADAHVLYGHGITVRGLEADTRYLARLFDSSLSSWEDQVRVSNDL 213

Query: 484  LEALTGDRKVMSEDKKAYQ-KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
            L  L   RK     ++     D    N    F G++ +  +      +K G         
Sbjct: 214  LVCLASRRKNHRRQREVVGVSDGESENCLYRFAGRLGIGGLEAHCSEEKFGE-------- 265

Query: 543  PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW--KLDGKPV----------- 589
                        W+ Y+A D+  T  LY+ L   L    W  +L  +P+           
Sbjct: 266  ------------WLKYAADDAYFTFMLYRRLTDTLRGQEWCTELHWQPIREKIRHGTTTF 313

Query: 590  ---------PGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVN 640
                      G SM DF  ++++PF E+LV++E  G   +REYL +    A+A+ E    
Sbjct: 314  NGMNDPETYTGLSMSDFAVKFYRPFTELLVEIERRGFGANREYLIQQLTAAQADLERHKE 373

Query: 641  RFRKWASKH--------CPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPN 692
             FR  A            P A+++N  S  Q+RQLLFG  P+  D    +   R+     
Sbjct: 374  AFRMIAQSLKDRRGQPLNPQAEFINPRSAKQIRQLLFG-NPDEPDHLRWV-ARRVRAGEE 431

Query: 693  TEGV--IAEGKKTPSKFRNITLRSIGVDLPTEMY--------TATGWPSVGGDALKTLAR 742
             E +    E    PS      ++ +G+     +Y          +GWP V    L+  A 
Sbjct: 432  AEWIQPFMEFPTAPSSKHRFIVKGLGLQPIAYLYGRERLSNYAPSGWPKVESAILRAFA- 490

Query: 743  NISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSID 802
                              G   E  Y  A      +   E  A   C  +  L     I 
Sbjct: 491  ------------------GEPHEGNYGVAYQQLEPVRGHEHAA-SVCRLLWHLQRSIRIS 531

Query: 803  SLISNFILPLQGSNVSGKNG--RVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQA 860
            + I++ + PL       ++G  R+H SL ++T TGRL  R+PNLQN P+   D Y IR+A
Sbjct: 532  AAITSVLSPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPNLQNPPSAHNDLYSIRKA 591

Query: 861  FIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETG 920
            F A PGN+LIV DY QLELRILAH++ C+SM+     GGD HS+ A++++P +  AV  G
Sbjct: 592  FSARPGNTLIVGDYSQLELRILAHMSRCESMIRQLNQGGDIHSQCAVDLFPEVAEAVANG 651

Query: 921  ---------------QVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
                           QV+++   E  P +P +K  F+++R++AK++NFSIAYGKT   LA
Sbjct: 652  SVGRLHSRIDRRATVQVVID-DAEAHPGIPSVKTKFSTQRQQAKVMNFSIAYGKTERTLA 710

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
             +  + V + +     W N ++ V  W+    +E R
Sbjct: 711  EEMDLPVTDIRDMFTRWNNSKKGVERWKAEILREVR 746


>gi|159475854|ref|XP_001696029.1| hypothetical protein CHLREDRAFT_175586 [Chlamydomonas reinhardtii]
 gi|158275200|gb|EDP00978.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 259

 Score =  253 bits (645), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 131/246 (53%), Positives = 162/246 (65%), Gaps = 36/246 (14%)

Query: 797  EVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYK 856
            +V +ID L+S FI+PLQ                                  PALEKDRYK
Sbjct: 6    QVNAIDKLLSAFIIPLQ----------------------------------PALEKDRYK 31

Query: 857  IRQAFIA--VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIR 914
            +RQAF A    G++L+VADYGQLELR+LAH+ +CKSML+AF  GGDFHSRTA+ MY HI+
Sbjct: 32   VRQAFTADVAAGHTLVVADYGQLELRLLAHMTDCKSMLEAFVLGGDFHSRTAVGMYDHIK 91

Query: 915  NAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEE 974
            +A+   +VLLEW GE + P+PL+KD +ASERRKAK+LNFSIAYGKT  GLA D+K S EE
Sbjct: 92   DAIRDNKVLLEWDGEGESPLPLVKDLYASERRKAKVLNFSIAYGKTAHGLAADFKTSKEE 151

Query: 975  AKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAA 1034
            A+ TVD WY +R EV  WQE  K+ +R +  V TLLGR R  P I +     + H ERAA
Sbjct: 152  AQATVDKWYADRFEVRQWQEKTKEGARQEGKVRTLLGRTRPLPGINAPDFKSKGHSERAA 211

Query: 1035 INTPVQ 1040
            INTP+Q
Sbjct: 212  INTPIQ 217


>gi|356500355|ref|XP_003518998.1| PREDICTED: DNA polymerase I-like [Glycine max]
          Length = 174

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/122 (75%), Positives = 103/122 (84%)

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
            MLNFSIAYGKTPVGL++DWKV+V EA++TVDLWYN+R+EVL WQ+ RKKE+     VHTL
Sbjct: 1    MLNFSIAYGKTPVGLSKDWKVTVTEARRTVDLWYNDRKEVLKWQKERKKEACESQRVHTL 60

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            LGRARRFP I       + HIERAAINTPVQGSAADVAMCAMLEIS N +LKELGWKLLL
Sbjct: 61   LGRARRFPKIDLANNYHKGHIERAAINTPVQGSAADVAMCAMLEISNNMKLKELGWKLLL 120

Query: 1070 QV 1071
            QV
Sbjct: 121  QV 122


>gi|307106559|gb|EFN54804.1| hypothetical protein CHLNCDRAFT_134785 [Chlorella variabilis]
          Length = 471

 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 90/155 (58%), Positives = 119/155 (76%), Gaps = 1/155 (0%)

Query: 918  ETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKK 977
            E  + LLEW GE  PP+PLLKD FASERRKAK+LNFSIAYGKT  GL++DWKVS+EEAK 
Sbjct: 263  EKRRCLLEWEGEGSPPLPLLKDLFASERRKAKVLNFSIAYGKTAHGLSKDWKVSLEEAKD 322

Query: 978  TVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP-AIKSLTRSQRNHIERAAIN 1036
            TVD WY +R E+  WQ+ ++++++   +V T+LGR R+ P A  S  R+ ++H  RAAIN
Sbjct: 323  TVDRWYADRPEIRKWQDEQRRQAQQRGYVTTILGRRRQLPDAALSRNRAAQSHALRAAIN 382

Query: 1037 TPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            TP+QGSAAD+A  AML I+++  L+ +GW+LLLQV
Sbjct: 383  TPIQGSAADIATAAMLRINEDEALQSMGWRLLLQV 417



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 87/142 (61%), Gaps = 7/142 (4%)

Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDA 653
           M+D Y   W PFG +L  ME  GM VDR +L+  ++ A+A+Q+ A +RFR+WA++   DA
Sbjct: 31  MWDVYCRAWLPFGALLTDMEAVGMAVDRSHLAAAQQQAQADQQRAQDRFRRWAARKVGDA 90

Query: 654 KYMNVGSDTQLRQLLFGGKPNSKDD--SESLPIERIFKVPNTEGVIAEGKKTPSKFRNIT 711
           ++MNVGS  Q++ LLF G  N   D   + LP+ER+FK+PN  G++ E  K P K  +I 
Sbjct: 91  QHMNVGSGAQVQTLLFAGAENRDKDKGKDPLPLERVFKIPNAMGLMGEKDKRPKKMWDIR 150

Query: 712 LRSI---GVDLP--TEMYTATG 728
           L S+   G   P   E++T  G
Sbjct: 151 LHSVWGQGTKSPLTPEVFTPAG 172


>gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
 gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
          Length = 940

 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 183/636 (28%), Positives = 260/636 (40%), Gaps = 174/636 (27%)

Query: 424  LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
            +L +  P+ ED S  KV  N  FD+H+L N+G+ + G   DTM  + + DS         
Sbjct: 414  VLADLKPWLEDASRTKVMQNAKFDSHMLANHGITLRGVLFDTMLESYVLDS--------- 464

Query: 484  LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
                T  R  M      Y                       GR  +  +  AGK +    
Sbjct: 465  ----TATRHDMDSLAAKY----------------------LGRSTITFEDIAGKGAKALS 498

Query: 544  VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
              E+  E+      Y+A D+  T +L + L  KL   S + D + V        Y+   Q
Sbjct: 499  FPEIHLEQAG---PYAAEDADVTGQLQQCLWPKL---SVEPDLRSV--------YETIEQ 544

Query: 604  PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
            P  E+LV ME  G+ VDR  L+ I+  A  E+ AAV    + A K     +  N+GS  Q
Sbjct: 545  PLIEVLVAMERAGVRVDRGELA-IQGKAIGERIAAVE---QAAFKEA--GREFNLGSTKQ 598

Query: 664  LRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEM 723
            L++LLF        D   LP+               GKKTP                   
Sbjct: 599  LKELLF--------DELKLPV---------------GKKTPK------------------ 617

Query: 724  YTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQ 783
                G PS   +AL  L            G+H L         +Y+G             
Sbjct: 618  ----GEPSTDEEALGELV-----------GSHPLP----ALILDYRG------------- 645

Query: 784  EAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSAR 840
                             +  L S +I  LP    ++    GRVH + +   T TGRLS+ 
Sbjct: 646  -----------------LSKLKSTYIDRLP---EDIHTHTGRVHSAFHQAVTATGRLSSS 685

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
             PNLQN P   ++  +IRQAF+A PG  LI ADY Q+ELRI+AHL+  + +  AF AG D
Sbjct: 686  NPNLQNIPIRSEEGRRIRQAFVADPGCKLISADYSQIELRIMAHLSEDERLCAAFAAGED 745

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H  TA  ++      V   Q                       RR AK +NF + YG +
Sbjct: 746  IHRATAAEVFGVKEVEVSDNQ-----------------------RRAAKAINFGLIYGMS 782

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLA+   V   EA+  +DL++     V  + E  ++++R   +V T+ GR    P I 
Sbjct: 783  AFGLAKQLDVPRGEAQAYIDLYFARYPGVAKYMERMRQQARQMGYVETVFGRRLYLPEIH 842

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            S    +R + ER AIN P+QG+AAD+   AM+ + K
Sbjct: 843  SRNGQRRQYAERTAINAPMQGTAADIIKIAMIALHK 878


>gi|435853194|ref|YP_007314513.1| DNA polymerase I [Halobacteroides halobius DSM 5150]
 gi|433669605|gb|AGB40420.1| DNA polymerase I [Halobacteroides halobius DSM 5150]
          Length = 856

 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/283 (36%), Positives = 158/283 (55%), Gaps = 29/283 (10%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQP 848
            + I  + E  S+  L S ++ PL+ S ++ K GR+H +     T TGRLS+R PNLQN P
Sbjct: 552  EIIPLISEYRSLTKLKSTYVDPLE-SYINEKTGRIHTNFKQQVTATGRLSSREPNLQNIP 610

Query: 849  ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
               ++  KIRQ F+A  G  L+ ADY Q+ELR+LAH++  + +  A++ G D H++TA  
Sbjct: 611  IRTEEGRKIRQVFVAQEGYKLVAADYSQVELRVLAHISQDERLKKAYQQGLDIHTQTAKE 670

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      + T Q                       RRKAK +NF IAYG +  GLA   
Sbjct: 671  LF-----GISTKQT----------------------RRKAKAVNFGIAYGISDWGLADRL 703

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
            K++  EAK+ +DL+++   +V  + + + ++++   +V T+  R R  P I S    +R 
Sbjct: 704  KINKREAKEYIDLYFSRYPKVKEYIDDKIRQAKKQGYVTTIFDRKRYLPEINSRNYHKRQ 763

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              ER AINTP+QGSAAD+   AML+++K    +EL   +LLQV
Sbjct: 764  FAERTAINTPIQGSAADIMKLAMLDVAKALEKEELASDILLQV 806


>gi|302840030|ref|XP_002951571.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f. nagariensis]
 gi|300263180|gb|EFJ47382.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f. nagariensis]
          Length = 1758

 Score =  174 bits (441), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/184 (53%), Positives = 126/184 (68%), Gaps = 14/184 (7%)

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
            C+SM +AF+ GGDFHSRTA  MY +I+ AV+ G+  LEW G+ +P  PL+KD +ASERRK
Sbjct: 3    CRSMKEAFELGGDFHSRTAYGMYEYIQEAVKNGECYLEWEGQGEPDKPLVKDKYASERRK 62

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK+LNFSIAYGKT  GLA D+K + EEA++TVD WY++R     W+E +         V 
Sbjct: 63   AKVLNFSIAYGKTAHGLAVDFKTTKEEAQETVDKWYSDR-----WEEFK---------VR 108

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            TLLGR R  P I S       H  RAAINTP+QGSAADVA  AM+ I K+  L+  G+KL
Sbjct: 109  TLLGRTRPLPNISSPDFRLSGHSNRAAINTPIQGSAADVAAAAMVAIHKSEALRATGFKL 168

Query: 1068 LLQV 1071
            L+Q+
Sbjct: 169  LMQI 172


>gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
 gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
          Length = 861

 Score =  174 bits (441), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/281 (36%), Positives = 157/281 (55%), Gaps = 28/281 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            ++ + E    + L S ++ P+    ++ KNGR+H + N + T TGRLS+  PNLQN P  
Sbjct: 559  VADVLEFRMYEKLRSTYLEPM--PQLADKNGRIHTTFNQLATATGRLSSSNPNLQNIPIR 616

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
                 ++R  F+A PGN L+ ADY Q+ELR+LAH++  +++ +AF AG D H+RTA  ++
Sbjct: 617  GALGPRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHARTAGILF 676

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                   +T +V                   A ERRKAK +NF + YG  P  L R+  +
Sbjct: 677  -------DTTEV------------------SADERRKAKTINFGLLYGMGPQKLGRELGI 711

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
            S++EAK+ + +++++   V  + E  +  ++   +V TL GR R  P I S   +     
Sbjct: 712  SLKEAKEFIAVYFSKLSRVREFYEEIEAGAKSLGYVTTLAGRRRMLPEINSRNTNMAQQA 771

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             R AINT VQGSAAD+   AMLE+ K+  + ELG  L+LQ+
Sbjct: 772  RRMAINTVVQGSAADIIKKAMLEVDKSPVIGELGASLILQI 812


>gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
 gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
          Length = 891

 Score =  174 bits (440), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 174/663 (26%), Positives = 272/663 (41%), Gaps = 184/663 (27%)

Query: 419  GGG------RD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
            GGG      RD ++ +  P  ED ++ KV  N  +D  VL   G+ + G  ADTM  + L
Sbjct: 355  GGGAEEQLPRDEVVAQVQPLLEDATLAKVGQNLKYDALVLRRAGIALRGVVADTMLQSYL 414

Query: 472  WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
               + R+ G   L+AL  D   +     +Y +    G    GF                 
Sbjct: 415  LYPAARSHG---LDALAADH--LGYKMISYSEVAGTGKKQIGF----------------- 452

Query: 532  DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
            D  A  ++T                 Y+A D+  TL+LY+    +L       DG     
Sbjct: 453  DEVALDVAT----------------RYAAEDADITLQLYQRFDAEL-------DG----- 484

Query: 592  KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCP 651
             ++ + ++    P  ++L+ ME  G+ VDRE L                           
Sbjct: 485  -TLRELFETVEMPLLQVLIDMEWWGVRVDRERL--------------------------- 516

Query: 652  DAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNIT 711
            DA  ++ G  T ++QL                 ++I+++   E  I     +P +   I 
Sbjct: 517  DA--LSAGFSTSIKQLE----------------QQIYELAGEEFNI----NSPKQLGVIL 554

Query: 712  LRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGA 771
               +  DLP    T TGW S   D LK LA                              
Sbjct: 555  FEKL--DLPHGKKTKTGW-STAVDVLKNLA------------------------------ 581

Query: 772  VASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN 829
                           +  D ++ + +  S+  L   +   LPL    +   +GR+H S N
Sbjct: 582  ---------------DKHDVVALILQYRSLAKLKGTYTDALPLL---IHPDSGRIHTSFN 623

Query: 830  -INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
               T TGRLS+  PNLQN P   ++   IR+AF+   G  L+ ADY Q+ELR++AH+A+ 
Sbjct: 624  QAVTATGRLSSSDPNLQNIPIRSEEGRAIREAFVPDAGQVLLAADYSQIELRVMAHMADE 683

Query: 889  KSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKA 948
              + ++F+ G D H RTA  ++    + V++                         RR+A
Sbjct: 684  PILQESFRQGEDIHQRTASEIFSVFPDMVDS-----------------------EMRRRA 720

Query: 949  KMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHT 1008
            K +NF + YG     LA+D  +S +EAK+ +D ++     VL + E +K+  R   +V T
Sbjct: 721  KTINFGVLYGMGAFSLAKDLGISNKEAKQYIDHYFERYPAVLEFIEQQKQFGREHLYVET 780

Query: 1009 LLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLL 1068
            LLGR      I S     R++ ER A+N PVQGSAAD+   AM+ I +  +  +L  +++
Sbjct: 781  LLGRRCAVSDINSKNGQVRSYAERNAVNYPVQGSAADIIKVAMVRIHQRLQDLQLKTRMV 840

Query: 1069 LQV 1071
            LQV
Sbjct: 841  LQV 843


>gi|409400480|ref|ZP_11250543.1| DNA polymerase I [Acidocella sp. MX-AZ02]
 gi|409130543|gb|EKN00301.1| DNA polymerase I [Acidocella sp. MX-AZ02]
          Length = 901

 Score =  173 bits (439), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 100/258 (38%), Positives = 144/258 (55%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
              +  K GRVH +  +  T TGRLS+  PNLQN P   ++  +IR+AFIA PG+SLI AD
Sbjct: 619  GQIDEKTGRVHTNFQMAATTTGRLSSTDPNLQNIPIRTEEGARIRKAFIAAPGHSLISAD 678

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+  ++  +F+ G D H+RTA  ++         G  ++E  G     
Sbjct: 679  YSQIELRLLAHVADIPALKQSFETGEDIHARTASEVF---------GVPMVEMDG----- 724

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                     + RR+AK +NF I YG +  GLAR   +S  EAK  +D ++    E+  + 
Sbjct: 725  ---------ATRRRAKAINFGIIYGISAFGLARQLGISAGEAKSYIDAYFKRYPEIRAYM 775

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            +A K+++R D +V T  GR    P IK    + R + ER AIN P+QG A+D+   AM+ 
Sbjct: 776  DATKEQARTDGYVLTPFGRRCWVPRIKDKIPALRAYAERQAINAPLQGGASDIIKRAMVR 835

Query: 1054 ISKNARLKELGWKLLLQV 1071
            + K      L  KLLLQV
Sbjct: 836  LPKALADAGLSTKLLLQV 853


>gi|336407634|ref|ZP_08588130.1| hypothetical protein HMPREF1018_00145 [Bacteroides sp. 2_1_56FAA]
 gi|335944713|gb|EGN06530.1| hypothetical protein HMPREF1018_00145 [Bacteroides sp. 2_1_56FAA]
          Length = 964

 Score =  172 bits (435), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 160/305 (52%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+     D I  + E   +  L+S +I  L    ++ K GR+H S N   T 
Sbjct: 643  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP-QLINPKTGRIHTSFNQTVTA 701

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M+D
Sbjct: 702  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 761

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  NF
Sbjct: 762  AFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTANF 798

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++    +V ++ +   + +R   +V T+  R 
Sbjct: 799  GIIYGISIFGLAERMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRK 858

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV  
Sbjct: 859  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHD 918

Query: 1074 FFSFS 1078
              +FS
Sbjct: 919  ELNFS 923


>gi|60679700|ref|YP_209844.1| DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|375356484|ref|YP_005109255.1| putative DNA polymerase I [Bacteroides fragilis 638R]
 gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R]
          Length = 941

 Score =  172 bits (435), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 160/305 (52%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+     D I  + E   +  L+S +I  L    ++ K GR+H S N   T 
Sbjct: 620  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP-QLINPKTGRIHTSFNQTVTA 678

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M+D
Sbjct: 679  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 738

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  NF
Sbjct: 739  AFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTANF 775

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++    +V ++ +   + +R   +V T+  R 
Sbjct: 776  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRK 835

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV  
Sbjct: 836  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHD 895

Query: 1074 FFSFS 1078
              +FS
Sbjct: 896  ELNFS 900


>gi|423248112|ref|ZP_17229128.1| DNA polymerase I [Bacteroides fragilis CL03T00C08]
 gi|423253061|ref|ZP_17233992.1| DNA polymerase I [Bacteroides fragilis CL03T12C07]
 gi|392656961|gb|EIY50598.1| DNA polymerase I [Bacteroides fragilis CL03T12C07]
 gi|392660532|gb|EIY54142.1| DNA polymerase I [Bacteroides fragilis CL03T00C08]
          Length = 935

 Score =  172 bits (435), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 160/305 (52%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+     D I  + E   +  L+S +I  L    ++ K GR+H S N   T 
Sbjct: 614  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP-QLINPKTGRIHTSFNQTVTA 672

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M+D
Sbjct: 673  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 732

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  NF
Sbjct: 733  AFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTANF 769

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++    +V ++ +   + +R   +V T+  R 
Sbjct: 770  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRK 829

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV  
Sbjct: 830  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHD 889

Query: 1074 FFSFS 1078
              +FS
Sbjct: 890  ELNFS 894


>gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46]
 gi|383116450|ref|ZP_09937198.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|423259554|ref|ZP_17240477.1| DNA polymerase I [Bacteroides fragilis CL07T00C01]
 gi|423263472|ref|ZP_17242475.1| DNA polymerase I [Bacteroides fragilis CL07T12C05]
 gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46]
 gi|382973754|gb|EES88569.2| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|387777134|gb|EIK39234.1| DNA polymerase I [Bacteroides fragilis CL07T00C01]
 gi|392706894|gb|EIZ00014.1| DNA polymerase I [Bacteroides fragilis CL07T12C05]
          Length = 935

 Score =  172 bits (435), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 160/305 (52%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+     D I  + E   +  L+S +I  L    ++ K GR+H S N   T 
Sbjct: 614  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP-QLINPKTGRIHTSFNQTVTA 672

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M+D
Sbjct: 673  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 732

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  NF
Sbjct: 733  AFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTANF 769

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++    +V ++ +   + +R   +V T+  R 
Sbjct: 770  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRK 829

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV  
Sbjct: 830  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHD 889

Query: 1074 FFSFS 1078
              +FS
Sbjct: 890  ELNFS 894


>gi|423270007|ref|ZP_17248979.1| DNA polymerase I [Bacteroides fragilis CL05T00C42]
 gi|423272538|ref|ZP_17251485.1| DNA polymerase I [Bacteroides fragilis CL05T12C13]
 gi|392700049|gb|EIY93217.1| DNA polymerase I [Bacteroides fragilis CL05T00C42]
 gi|392708804|gb|EIZ01908.1| DNA polymerase I [Bacteroides fragilis CL05T12C13]
          Length = 935

 Score =  172 bits (435), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 160/305 (52%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+     D I  + E   +  L+S +I  L    ++ K GR+H S N   T 
Sbjct: 614  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP-QLINPKTGRIHTSFNQTVTA 672

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M+D
Sbjct: 673  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 732

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  NF
Sbjct: 733  AFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTANF 769

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++    +V ++ +   + +R   +V T+  R 
Sbjct: 770  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRK 829

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV  
Sbjct: 830  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHD 889

Query: 1074 FFSFS 1078
              +FS
Sbjct: 890  ELNFS 894


>gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16]
 gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16]
          Length = 941

 Score =  172 bits (435), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 160/305 (52%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+     D I  + E   +  L+S +I  L    ++ K GR+H S N   T 
Sbjct: 620  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP-QLINPKTGRIHTSFNQTVTA 678

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M+D
Sbjct: 679  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 738

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  NF
Sbjct: 739  AFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTANF 775

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++    +V ++ +   + +R   +V T+  R 
Sbjct: 776  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRK 835

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV  
Sbjct: 836  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHD 895

Query: 1074 FFSFS 1078
              +FS
Sbjct: 896  ELNFS 900


>gi|337287066|ref|YP_004626539.1| DNA polymerase I [Thermodesulfatator indicus DSM 15286]
 gi|335359894|gb|AEH45575.1| DNA polymerase I [Thermodesulfatator indicus DSM 15286]
          Length = 903

 Score =  172 bits (435), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/298 (35%), Positives = 156/298 (52%), Gaps = 29/298 (9%)

Query: 779  FATEQEAREACDAISAL----CEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            ++T+ E  E   A+  L     E  ++  L S ++  L    V+ + GR+H S N   T 
Sbjct: 581  YSTDNEVLEELSAVHELPRLILEYRTLAKLKSTYVDALP-KMVNPETGRLHTSFNQTVTA 639

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P   ++  KIRQAF+   G   + ADY Q++LR+LAH +  ++++ 
Sbjct: 640  TGRLSSSDPNLQNIPVRGEEGLKIRQAFVPEEGFLFLSADYSQIDLRVLAHYSGDETLIK 699

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF  G D H RTA  ++                     PP    ++     RR AK +NF
Sbjct: 700  AFWQGEDIHRRTAAEIF-------------------GIPP----EEVTPEMRRMAKTINF 736

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +P GLA++ K+   EAK  ++ ++     V  + E    E+R   +V TL GR 
Sbjct: 737  GIVYGMSPYGLAKELKIGRREAKAFIERYFERYPGVKRYMEQIVAEAREKGYVETLFGRK 796

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R  P I S  R+ R   ER AINTP+QG+AAD+   AM++I +  + K  G ++LLQV
Sbjct: 797  RPLPDINSPNRTAREFAERTAINTPIQGTAADIIKLAMIKIHRIFKEKGFGTRMLLQV 854



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 128/321 (39%), Gaps = 82/321 (25%)

Query: 363 NKYKHLVH-ACDTEVAKIDVKQET--PVDHGEVICFSI-YSGPEADF--------GNGKS 410
           +K K +V  A   EV  ID++ +T  P+  G+++  S+ ++ P+A +           K 
Sbjct: 312 DKVKEIVEKAKGAEVVAIDLESDTKDPM-RGKIVGVSLCFNPPKAYYFPFRHEGLEAQKQ 370

Query: 411 CIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMAR 470
             W         +     A   EDPS+KK+ HN  +D  +L  YG+ + G   DTM  + 
Sbjct: 371 LPW---------EAFTHLASLIEDPSVKKIGHNIKYDLIILARYGVTLKGLEGDTMLASY 421

Query: 471 LWDSSRRTEGGYSL-EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKL 529
           L D +RRT G   L E + G   +     K   K+++KG +             F R  L
Sbjct: 422 LLDPTRRTHGLDELAEEVLGHTMI---SYKEVTKELAKGES-------------FARVPL 465

Query: 530 KKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPV 589
           +K     K+                   Y+  D+  T  LY+    KL E          
Sbjct: 466 EK----AKV-------------------YACEDAHVTYLLYQYFWPKLKE---------- 492

Query: 590 PGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK- 648
             +S++  + E  +P  E+L  ME  G+ +D  YL       R        + ++   K 
Sbjct: 493 --ESLWKVFTEIDRPLIEVLAHMEMVGIKIDTAYL-------RGLSREMAEKLKELEEKI 543

Query: 649 HCPDAKYMNVGSDTQLRQLLF 669
           +    +  N+ S  QL Q+LF
Sbjct: 544 YTLAGEKFNINSSKQLGQILF 564


>gi|427384796|ref|ZP_18881301.1| DNA polymerase I [Bacteroides oleiciplenus YIT 12058]
 gi|425728057|gb|EKU90916.1| DNA polymerase I [Bacteroides oleiciplenus YIT 12058]
          Length = 952

 Score =  171 bits (434), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 159/307 (51%), Gaps = 33/307 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
            + T +E  E+     D I  + E   +  L+  ++  LPL    ++ + GR+H S N   
Sbjct: 631  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLGTYVDALPLL---INPRTGRIHTSFNQAV 687

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M
Sbjct: 688  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNM 747

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      ++                  +KD  A  RRKAK  
Sbjct: 748  IDAFLSGYDIHAATAAKIY-----KID------------------IKDVTADMRRKAKTA 784

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R   +V T+  
Sbjct: 785  NFGIIYGISIFGLAERMNVDRKEAKELIDGYFETYPQVREYMDKSIQVAREQGYVETIFH 844

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S   + R + ER AIN P+QGSAAD+   AM  I K  +   L  K++LQV
Sbjct: 845  RKRFLPDINSRNATVRGYAERNAINAPIQGSAADIIKVAMARIYKRFQAYNLKAKMILQV 904

Query: 1072 LFFFSFS 1078
                +FS
Sbjct: 905  HDELNFS 911


>gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 951

 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/297 (36%), Positives = 152/297 (51%), Gaps = 25/297 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
            Q  R   D I  + E   +  L+S +I  L    ++ + GR+H S N   T TGRLS+  
Sbjct: 638  QSYRSKHDIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTATGRLSSSN 696

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+DAF +G D 
Sbjct: 697  PNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGHDI 756

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA  +Y    N                       D  A  RRKAK  NF I YG + 
Sbjct: 757  HAATAAKIYKIDIN-----------------------DVTADMRRKAKTANFGIIYGISV 793

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA    VS +EAK+ +D ++    +V  + +   + +R + +V T+  R R  P I S
Sbjct: 794  FGLAERMGVSRQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDINS 853

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFS 1078
                 R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQV    +FS
Sbjct: 854  RNGVVRGYAERNAINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFS 910



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 125/318 (39%), Gaps = 77/318 (24%)

Query: 310 NDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVW-MLTNKYKHL 368
           N A EGTG     SEN N  +LE+L         +  ++D      +++  +LT++    
Sbjct: 335 NFAGEGTG----VSENSNLTRLEMLDV-------DYQLIDTEDKRAEIIQKLLTSE---- 379

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEF 428
           + + DTE    +     P+D  E++  S      +D  N    + V         ++NEF
Sbjct: 380 ILSIDTETTGTE-----PMD-AELVGMSF-----SDAENRAYYVPVPAEREEVLKIVNEF 428

Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALT 488
            P FE+    KV  N  +D  +L+NYG++V G   DTM    +     R    Y      
Sbjct: 429 RPLFENEKSMKVGQNIKYDMIILQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY------ 482

Query: 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQ 548
                ++E    YQ               I + ++ G R     G   K     P E++ 
Sbjct: 483 -----LAEIYLHYQ--------------TIHIDELIGAR-----GKNQKNMRDLPPEDVY 518

Query: 549 REERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI 608
           R        Y+  D+  TLKL   L+K+L E   +              + E   P   +
Sbjct: 519 R--------YACEDADVTLKLKNVLEKELKEQGAE------------HLFYEIEMPLVPV 558

Query: 609 LVKMETEGMLVDREYLSE 626
           LV +E+ G+L+D E L +
Sbjct: 559 LVNIESNGVLLDTEALKQ 576


>gi|423282583|ref|ZP_17261468.1| DNA polymerase I [Bacteroides fragilis HMW 615]
 gi|404582151|gb|EKA86846.1| DNA polymerase I [Bacteroides fragilis HMW 615]
          Length = 964

 Score =  171 bits (432), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 160/305 (52%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+     D I  + E   +  L+S +I  L    ++ + GR+H S N   T 
Sbjct: 643  YVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALP-QLINPQTGRIHTSFNQTVTA 701

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M+D
Sbjct: 702  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 761

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  NF
Sbjct: 762  AFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTANF 798

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++    +V ++ +   + +R   +V T+  R 
Sbjct: 799  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRK 858

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV  
Sbjct: 859  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHD 918

Query: 1074 FFSFS 1078
              +FS
Sbjct: 919  ELNFS 923


>gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
 gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
          Length = 872

 Score =  171 bits (432), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 160/283 (56%), Gaps = 25/283 (8%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQP 848
            + +  + E      L S ++ PL    ++ K  R+H S N + T TGRLS+  PNLQN P
Sbjct: 563  EIVPLILEYRKYQKLKSTYVDPLPDL-INPKTERIHTSFNQLVTATGRLSSTEPNLQNIP 621

Query: 849  ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
               ++  +IR+ F+A     L+  DY Q+ELR+LAH++  ++++ A++ G D H++TA  
Sbjct: 622  IRTEEGRRIRKVFVAEERKELLAVDYSQIELRVLAHISQDENLIAAYREGQDIHTKTAAE 681

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E  +V  +                  +RR+AK +NF IAYG +P GLA+D 
Sbjct: 682  VF-----GLEASEVSYQ------------------QRRRAKAINFGIAYGISPWGLAKDI 718

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             VS +EA+  ++ + N   +V  + + + K+++ + +V T+L R R  P I S    +R+
Sbjct: 719  NVSKQEAEDYINQYLNRYPKVKEYMDHQIKQAKEEGYVTTILNRRRYLPEINSSNYHRRS 778

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              ER AINTP+QGSAAD+   AMLE ++    +EL  K+LLQV
Sbjct: 779  FGERMAINTPIQGSAADIMKLAMLESARVLDERELDTKILLQV 821


>gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
 gi|156861999|gb|EDO55430.1| DNA-directed DNA polymerase [Bacteroides uniformis ATCC 8492]
          Length = 958

 Score =  171 bits (432), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/297 (36%), Positives = 152/297 (51%), Gaps = 25/297 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
            Q  R   D I  + E   +  L+S +I  L    ++ + GR+H S N   T TGRLS+  
Sbjct: 645  QSYRSKHDIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTATGRLSSSN 703

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+DAF +G D 
Sbjct: 704  PNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGHDI 763

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA  +Y    N                       D  A  RRKAK  NF I YG + 
Sbjct: 764  HAATAAKIYKIDIN-----------------------DVTADMRRKAKTANFGIIYGISV 800

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA    VS +EAK+ +D ++    +V  + +   + +R + +V T+  R R  P I S
Sbjct: 801  FGLAERMGVSRQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDINS 860

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFS 1078
                 R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQV    +FS
Sbjct: 861  RNGVVRGYAERNAINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFS 917



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 125/318 (39%), Gaps = 77/318 (24%)

Query: 310 NDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVW-MLTNKYKHL 368
           N A EGTG     SEN N  +LE+L         +  ++D      +++  +LT++    
Sbjct: 342 NFAGEGTG----VSENSNLTRLEMLDI-------DYQLIDTEDKRAEIIQKLLTSE---- 386

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEF 428
           + + DTE    +     P+D  E++  S      +D  N    + V         ++NEF
Sbjct: 387 ILSIDTETTGTE-----PMD-AELVGMSF-----SDAENRAYYVPVPAEREEVLKIVNEF 435

Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALT 488
            P FE+    KV  N  +D  +L+NYG++V G   DTM    +     R    Y      
Sbjct: 436 RPLFENEKSMKVGQNIKYDMIILQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY------ 489

Query: 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQ 548
                ++E    YQ               I + ++ G R     G   K     P E++ 
Sbjct: 490 -----LAEIYLHYQ--------------TIHIDELIGAR-----GKNQKNMRDLPPEDVY 525

Query: 549 REERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI 608
           R        Y+  D+  TLKL   L+K+L E   +              + E   P   +
Sbjct: 526 R--------YACEDADVTLKLKNVLEKELKEQGAE------------HLFYEIEMPLVPV 565

Query: 609 LVKMETEGMLVDREYLSE 626
           LV +E+ G+L+D E L +
Sbjct: 566 LVNIESNGVLLDTEALKQ 583


>gi|423281298|ref|ZP_17260209.1| DNA polymerase I [Bacteroides fragilis HMW 610]
 gi|404583206|gb|EKA87888.1| DNA polymerase I [Bacteroides fragilis HMW 610]
          Length = 964

 Score =  171 bits (432), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 159/305 (52%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+     D I  + E   +  L+S +I  L    ++ + GR+H S N   T 
Sbjct: 643  YVTSEEVLESLRNKHDVIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQTVTA 701

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M+D
Sbjct: 702  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 761

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  NF
Sbjct: 762  AFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTANF 798

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R   +V T+  R 
Sbjct: 799  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFHRK 858

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV  
Sbjct: 859  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHD 918

Query: 1074 FFSFS 1078
              +FS
Sbjct: 919  ELNFS 923


>gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
 gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 941

 Score =  171 bits (432), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 159/305 (52%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+     D I  + E   +  L+S +I  L    ++ + GR+H S N   T 
Sbjct: 620  YVTSEEVLESLRNKHDVIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQTVTA 678

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M+D
Sbjct: 679  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMID 738

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      V+                  +K+  A  RRKAK  NF
Sbjct: 739  AFLSGYDIHAATAAKIY-----KVD------------------IKEVTADMRRKAKTANF 775

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R   +V T+  R 
Sbjct: 776  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFHRK 835

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV  
Sbjct: 836  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHD 895

Query: 1074 FFSFS 1078
              +FS
Sbjct: 896  ELNFS 900


>gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150]
 gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150]
          Length = 894

 Score =  171 bits (432), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 183/698 (26%), Positives = 284/698 (40%), Gaps = 203/698 (29%)

Query: 372  CDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNE---- 427
             DTE   +DV         E++  S+          GK+       D G   LL E    
Sbjct: 323  IDTETTSLDVMM------AEIVGISL------AIEEGKAAYIPLTHDDGSPQLLREEVLT 370

Query: 428  -FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
               P  E+P+IKK+  N  +D  VL N+G+ + G + DTM  + + +S     G + +++
Sbjct: 371  ALNPILENPTIKKIGQNLKYDYSVLRNHGITLKGIYYDTMLESYVLNSG---SGRHDMDS 427

Query: 487  LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
            L    K +     +Y++   KG                  ++L+ D          PVE+
Sbjct: 428  LA--LKYLGHKTISYEEIAGKG-----------------AKQLRFDQ--------IPVEK 460

Query: 547  LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606
                      +Y+A D+  TL+L+  L              P+  +S+   +     P  
Sbjct: 461  AG--------AYAAEDADITLQLHHKLY-------------PLIPESVHHVFGNIEMPLV 499

Query: 607  EILVKMETEGMLVDREYLSE-----IEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
             +L  ME  G+L+D   L +      E++   E+EA           H    K  N+ S 
Sbjct: 500  TVLADMERMGVLIDSATLKQHGERLKERIRTLEEEAL----------HLA-GKPFNLNSP 548

Query: 662  TQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPT 721
             QL+++LF        DS  LP            +IA   KTP                 
Sbjct: 549  KQLQEILF--------DSHKLP------------IIA---KTP----------------- 568

Query: 722  EMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFAT 781
                 TG PS     L+ LA      YD                  Y+ A          
Sbjct: 569  -----TGQPSTAEAVLQELA------YD------------------YRLA---------- 589

Query: 782  EQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
                       + + E  S+  L+S +I  LP     ++ K  RVH S N   T TGRLS
Sbjct: 590  -----------AVILEYRSLTKLVSTYIDALP---KKINPKTNRVHTSYNQAVTATGRLS 635

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++   IR AFIA   N ++ ADY Q+ELRI+AHL+  +++L AF  G
Sbjct: 636  SSEPNLQNIPIRSEEGRLIRTAFIAPEDNIILAADYSQIELRIMAHLSQDENLLKAFANG 695

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  ++          Q+ LE             +    +RR+AK +NF + YG
Sbjct: 696  WDVHAATASEIF----------QIPLE-------------EINNEQRRRAKAINFGLIYG 732

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLA+   V  ++A+  +D ++    +VL +    ++++    +V TL GR    P 
Sbjct: 733  MSSFGLAKQIGVERQDAQYYIDTYFQRYPKVLEYMNRTRQQAHHQGYVETLFGRRLYLPE 792

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            I +    ++   ER AIN P+QG+AAD+   AM+ I+K
Sbjct: 793  INARNLMRQKAAERTAINAPMQGTAADIIKNAMICIAK 830


>gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
 gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
          Length = 929

 Score =  170 bits (431), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 144/263 (54%), Gaps = 28/263 (10%)

Query: 810  LPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    ++ KNGR+H S L   T TGRLS+R PNLQN P  ++   +IR AF AVPG  
Sbjct: 646  LPL----LADKNGRIHTSFLQTGTATGRLSSRDPNLQNIPVRDESGRRIRSAFTAVPGTV 701

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            LI ADY Q+EL +LAHL+  K++  AF  G D H  TA  +Y      +   QV      
Sbjct: 702  LISADYSQIELVVLAHLSGDKNLCSAFINGIDVHKSTAALIY-----GISPEQV------ 750

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
              KP           +RR AK +NF + YG +   LA +  +S  EAK  +D +++   +
Sbjct: 751  --KP----------EQRRFAKTVNFGVMYGMSAFRLANELNISRTEAKNFIDQYFSTYSD 798

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            V  + +  K+ +R + +V T+ GR R  P IKS ++      ER AINTP+QGSAAD+  
Sbjct: 799  VKKFLDETKRMARENGYVETITGRRRYIPEIKSSSKIVLQGAERIAINTPIQGSAADIVK 858

Query: 1049 CAMLEISKNARLKELGWKLLLQV 1071
             AM+++         G K+LLQV
Sbjct: 859  TAMIKVQAALEKSGTGAKMLLQV 881


>gi|424665766|ref|ZP_18102802.1| DNA polymerase I [Bacteroides fragilis HMW 616]
 gi|404574019|gb|EKA78770.1| DNA polymerase I [Bacteroides fragilis HMW 616]
          Length = 935

 Score =  170 bits (430), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/305 (35%), Positives = 159/305 (52%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+     D I  + E   +  L+S +I  L    ++ + GR+H S N   T 
Sbjct: 614  YVTSEEVLESLRNRHDVIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQTVTA 672

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G S   ADY Q+ELRI+AHL+  K+M+D
Sbjct: 673  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMID 732

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      ++                  +K+  A  RRKAK  NF
Sbjct: 733  AFLSGYDIHAATAAKIY-----KID------------------IKEVTADMRRKAKTANF 769

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R   +V T+  R 
Sbjct: 770  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFHRK 829

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV  
Sbjct: 830  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHD 889

Query: 1074 FFSFS 1078
              +FS
Sbjct: 890  ELNFS 894


>gi|392375299|ref|YP_003207132.1| DNA polymerase I [Candidatus Methylomirabilis oxyfera]
 gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [Candidatus Methylomirabilis oxyfera]
          Length = 873

 Score =  170 bits (430), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 99/252 (39%), Positives = 144/252 (57%), Gaps = 24/252 (9%)

Query: 821  NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            +GR+H S N   T TGRLS+  PNLQN P   +   +IRQAF+A  G+ L+ ADY Q+EL
Sbjct: 596  SGRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEVGRRIRQAFVASEGHRLLSADYSQIEL 655

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RILAHL+  ++++ AF AGGD H  TA  ++      V+   V +E              
Sbjct: 656  RILAHLSQDQALIAAFIAGGDVHRSTAAEVF-----GVQPEAVTVEM------------- 697

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RR+AK++NF I YG +P GLA + ++S EEA   +D ++     V  + +    E
Sbjct: 698  -----RRRAKVINFGIVYGMSPFGLAAELEISQEEAALYIDRYFQIYHGVKAFIDRTICE 752

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +R    V T  GR R  P +KS  ++ R   ER A+NTP+QGSAAD+   AM+ IS+  R
Sbjct: 753  ARELGFVSTFWGRRRAIPELKSSDQTVRQLGERLAVNTPIQGSAADLIKVAMIAISRRLR 812

Query: 1060 LKELGWKLLLQV 1071
             ++L  +++LQ+
Sbjct: 813  SEQLETRMILQI 824


>gi|374261140|ref|ZP_09619727.1| DNA polymerase I [Legionella drancourtii LLAP12]
 gi|363538527|gb|EHL31934.1| DNA polymerase I [Legionella drancourtii LLAP12]
          Length = 856

 Score =  170 bits (430), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 175/653 (26%), Positives = 271/653 (41%), Gaps = 194/653 (29%)

Query: 418  DGGGRDLLNE-FA---PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
            DG  + L +E FA   P  E+P+IKK+  N  +D  VL+N+G+ + G   DTM  + + +
Sbjct: 320  DGSVQLLRDEVFAAIKPILENPAIKKIGQNIKYDYSVLKNHGIHLQGLAYDTMLESYILN 379

Query: 474  SS--RRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
            S+  R      SL+ L G + +  ED                  GK       G ++L+ 
Sbjct: 380  SNAGRHDMDTLSLKYL-GHKTITFED----------------IAGK-------GAKQLRF 415

Query: 532  DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
            D          PV++           Y+A D+  TL+L+  L              P+  
Sbjct: 416  DQ--------IPVDKAS--------VYAAEDADITLQLHHKLY-------------PMMA 446

Query: 592  KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSE-----IEKVARAEQEAAVNRFRKWA 646
            +S+   + +   P   +L +ME  G+L+D   L +      E++   E+EA      + A
Sbjct: 447  ESLHSVFNDIEMPLIPVLAEMELRGVLIDANTLEQHGKRLKERIKILEEEAI-----QLA 501

Query: 647  SKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK 706
             K        N+ S  QL+++LF  +                K+P    VIA   KTP  
Sbjct: 502  GKP------FNLSSPKQLQEILFNEQ----------------KIP----VIA---KTP-- 530

Query: 707  FRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEET 766
                                TG PS     L+ LA      +D    A  L+  G T+  
Sbjct: 531  --------------------TGQPSTAESVLQELA------FDYRLAAVILEHRGLTK-- 562

Query: 767  EYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRV 824
                                                 L+S +I  LP     ++ + GRV
Sbjct: 563  -------------------------------------LVSTYIDALP---KKINAETGRV 582

Query: 825  HCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILA 883
            H S N     TGRLS+  PNLQN P   ++   IR AFIA P   ++ ADY Q+ELRI+A
Sbjct: 583  HTSYNQAVAATGRLSSSEPNLQNIPIRNEEGRLIRTAFIAPPEQVILAADYSQIELRIMA 642

Query: 884  HLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFAS 943
            HL+  +++L AF  G D H+ TA  ++   R  V + Q                      
Sbjct: 643  HLSQDENLLTAFANGWDIHTATAAEIFHIAREEVTSEQ---------------------- 680

Query: 944  ERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRID 1003
             RR+AK +NF + YG +  GLA+   V  ++A+  +D ++    +VL +    ++++   
Sbjct: 681  -RRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQNYIDTYFQRYPKVLEYMNRTRQQAHEQ 739

Query: 1004 NHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
             +V TL GR    P I +    ++   ER AIN P+QG+AAD+   AM+ I+K
Sbjct: 740  GYVETLCGRRLYLPEINTRNLMRQKAAERTAINAPMQGTAADIIKKAMINIAK 792


>gi|423223209|ref|ZP_17209678.1| DNA polymerase I [Bacteroides cellulosilyticus CL02T12C19]
 gi|392639310|gb|EIY33135.1| DNA polymerase I [Bacteroides cellulosilyticus CL02T12C19]
          Length = 952

 Score =  169 bits (428), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 159/307 (51%), Gaps = 33/307 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
            + T +E  E+     + I  + E   +  L+  +I  LPL    ++ + GR+H S N   
Sbjct: 631  YVTSEEVLESLRNKHEIIGKILEYRGLKKLLGTYIDALPLL---INPRTGRIHTSFNQAV 687

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M
Sbjct: 688  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNM 747

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      V+                  +KD  +  RRKAK  
Sbjct: 748  IDAFLSGYDIHAATAAKIY-----KVD------------------IKDVTSDMRRKAKTA 784

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R   +V T+  
Sbjct: 785  NFGIIYGISIFGLAERMNVDRKEAKELIDGYFETYPQVREYMDKSIQIAREQGYVETIFH 844

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S   + R + ER AIN P+QGSAAD+   AM  I K  +   L  K++LQV
Sbjct: 845  RKRFLPDINSRNATVRGYAERNAINAPIQGSAADIIKVAMARIYKRFQSNNLKAKMILQV 904

Query: 1072 LFFFSFS 1078
                +FS
Sbjct: 905  HDELNFS 911



 Score = 43.1 bits (100), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 50/203 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++NEF P +E+ +  KV  N  +D  VL+NYG++V G   DTM    +     R    Y 
Sbjct: 425 IVNEFRPLYENETSMKVGQNIKYDILVLQNYGMEVKGELFDTMIAHYVLQPELRHNMDY- 483

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
                     ++E    YQ               I + ++ G R     G   K     P
Sbjct: 484 ----------LAEIYLHYQ--------------TIHIDELIGPR-----GKNQKNMRDLP 514

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            EE+ +        Y+  D+  TLKL     K +LE   K  G       +   + E   
Sbjct: 515 PEEVYK--------YACEDADVTLKL-----KNVLEEELKKQG-------VEHLFYEIEM 554

Query: 604 PFGEILVKMETEGMLVDREYLSE 626
           P   +L  +E+ G+ +D E L +
Sbjct: 555 PLVRVLANLESNGVRIDTEALKQ 577


>gi|404492180|ref|YP_006716286.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
          Length = 891

 Score =  169 bits (428), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 98/252 (38%), Positives = 143/252 (56%), Gaps = 24/252 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GR+H S N   T TGRLS+  PNLQN P   ++  +IR+AF+   GN L+ ADY Q+EL
Sbjct: 615  TGRIHTSFNQAVTATGRLSSSDPNLQNIPIRTEEGRRIREAFVPAEGNLLLAADYSQVEL 674

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RILAH+A+  ++ ++F  G D H+RTA  ++           V LE              
Sbjct: 675  RILAHMADEPALKESFAHGEDIHARTASEIF----------GVFLEL------------- 711

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RR+AK +NF + YG +  GLA+   ++ +EA+  +D ++    +VL + EA+K E
Sbjct: 712  VTPEMRRQAKTINFGVLYGMSAFGLAKSLGIARKEAQTYIDNYFARYPKVLEFMEAKKAE 771

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +R   +V TLLGR    P I S   + R + ER AIN P+QGSAAD+   AML I +  +
Sbjct: 772  AREKQYVTTLLGRRCAVPEIASKNGAVRGYAERNAINYPIQGSAADIIKVAMLRIHERLK 831

Query: 1060 LKELGWKLLLQV 1071
             ++L  K++LQV
Sbjct: 832  AEKLETKMVLQV 843


>gi|418054846|ref|ZP_12692902.1| DNA polymerase I [Hyphomicrobium denitrificans 1NES1]
 gi|353212471|gb|EHB77871.1| DNA polymerase I [Hyphomicrobium denitrificans 1NES1]
          Length = 998

 Score =  169 bits (428), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 156/300 (52%), Gaps = 31/300 (10%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GR+H S  +  T TGRL++  PNLQN P   K+  +IR AFIA  G  L+ ADY 
Sbjct: 713  INAETGRIHTSYALGATTTGRLASSDPNLQNIPIRTKEGREIRTAFIADKGMKLVSADYS 772

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 773  QIELRVLAHVADIPQLKKAFAEGLDIHAMTASEMFG----------------------VP 810

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            + KD  A  RR+AK +NF I YG +  GLA    +S EEA   +  ++     +  + +A
Sbjct: 811  I-KDMPAEVRRRAKAINFGIIYGISAFGLANQLGISREEAGDYIKTYFQRFPGIRDYMDA 869

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             KK+     HV T+ GR   +P I +   S R  +ERAAIN P+QGSAAD+   AM+ + 
Sbjct: 870  TKKQVHAHGHVETIFGRRIHYPEINTKNPSMRGFLERAAINAPIQGSAADIIRRAMIRMP 929

Query: 1056 KNARLKEL-GWKLLLQV----LFFFSFSFFSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
               ++ +L   K+LLQV    +F  + S  S ++  +C+  V+  A  P    S  +H D
Sbjct: 930  AALKIAKLPSAKMLLQVHDELVFEVADSDASALIKTACR--VMETAAEPAVKLSVPIHVD 987


>gi|354594732|ref|ZP_09012769.1| DNA polymerase I [Commensalibacter intestini A911]
 gi|353671571|gb|EHD13273.1| DNA polymerase I [Commensalibacter intestini A911]
          Length = 927

 Score =  169 bits (427), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/257 (38%), Positives = 147/257 (57%), Gaps = 24/257 (9%)

Query: 816  NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
             ++ K GRVH S N + T TGRLS+  PNLQN P   ++  KIR AFIA PG+ L+ ADY
Sbjct: 646  QINPKTGRVHTSFNMVGTVTGRLSSTDPNLQNIPIRSEEGGKIRAAFIAAPGHVLVSADY 705

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+AN   + ++F  G D H+RTA  ++      +E         G D    
Sbjct: 706  SQIELRLLAHVANIPQLKNSFIHGEDIHARTASEVF---NTPIE---------GMD---- 749

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PL+       RR+AK +NF I YG +  GL +   VS   AK+ +D ++    E+ T+ +
Sbjct: 750  PLV-------RRQAKAINFGIIYGISAFGLGKQLGVSAGVAKQYIDTYFARYPEIKTYMQ 802

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              ++E++ + +V T  GR      I++    QR + ER AIN P+QG AAD+   AML++
Sbjct: 803  TTQEEAKENGYVLTPFGRKCWVSGIQTAKGPQRAYAERQAINAPLQGGAADIIKSAMLDM 862

Query: 1055 SKNARLKELGWKLLLQV 1071
            ++  + + L  K+LLQV
Sbjct: 863  NQAIKEQALQAKMLLQV 879


>gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 941

 Score =  169 bits (427), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 159/307 (51%), Gaps = 33/307 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
            + T +E  E+     + I  + E   +  L+  +I  LPL    ++ + GR+H S N   
Sbjct: 620  YVTSEEVLESLRNKHEIIGKILEYRGLKKLLGTYIDALPLL---INPRTGRIHTSFNQAV 676

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M
Sbjct: 677  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNM 736

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      V+                  +KD  +  RRKAK  
Sbjct: 737  IDAFLSGYDIHAATAAKIY-----KVD------------------IKDVTSDMRRKAKTA 773

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R   +V T+  
Sbjct: 774  NFGIIYGISIFGLAERMNVDRKEAKELIDGYFETYPQVREYMDKSIQIAREQGYVETIFH 833

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S   + R + ER AIN P+QGSAAD+   AM  I K  +   L  K++LQV
Sbjct: 834  RKRFLPDINSRNATVRGYAERNAINAPIQGSAADIIKVAMARIYKRFQSNNLKAKMILQV 893

Query: 1072 LFFFSFS 1078
                +FS
Sbjct: 894  HDELNFS 900



 Score = 43.5 bits (101), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 50/203 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++NEF P +E+ +  KV  N  +D  VL+NYG++V G   DTM    +     R    Y 
Sbjct: 414 IVNEFRPLYENETSMKVGQNIKYDILVLQNYGMEVKGELFDTMIAHYVLQPELRHNMDY- 472

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
                     ++E    YQ               I + ++ G R     G   K     P
Sbjct: 473 ----------LAEIYLHYQ--------------TIHIDELIGPR-----GKNQKNMRDLP 503

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            EE+ +        Y+  D+  TLKL     K +LE   K  G       +   + E   
Sbjct: 504 PEEVYK--------YACEDADVTLKL-----KNVLEEELKKQG-------VEHLFYEIEM 543

Query: 604 PFGEILVKMETEGMLVDREYLSE 626
           P   +L  +E+ G+ +D E L +
Sbjct: 544 PLVRVLANLESNGVRIDTEALKQ 566


>gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36]
 gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36]
          Length = 951

 Score =  168 bits (426), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/297 (36%), Positives = 151/297 (50%), Gaps = 25/297 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
            Q  R   D I  + E   +  L+S +I  L    ++ + GR+H S N   T TGRLS+  
Sbjct: 638  QSYRSKHDIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTATGRLSSSN 696

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M++AF +G D 
Sbjct: 697  PNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIEAFLSGHDI 756

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA  +Y    N                       D  A  RRKAK  NF I YG + 
Sbjct: 757  HAATAAKIYKIDIN-----------------------DVTADMRRKAKTANFGIIYGISV 793

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA    VS +EAK+ +D ++    +V  + +   + +R   +V T+  R R  P I S
Sbjct: 794  FGLAERMGVSRQEAKELIDGYFETYPQVKEYMDKSIQVAREQGYVETIFHRKRFLPDINS 853

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFS 1078
                 R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQV    +FS
Sbjct: 854  RNGVVRGYAERNAINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFS 910



 Score = 47.8 bits (112), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 129/319 (40%), Gaps = 79/319 (24%)

Query: 310 NDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVW-MLTNKYKHL 368
           N A EGTG     SEN N  +LE+L         +  ++D      +++  +LT++    
Sbjct: 335 NFAGEGTG----VSENSNLTRLEMLDV-------DYQLIDTEDKRAEIIQKLLTSE---- 379

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEF 428
           + + DTE    +     P+D  E++  S      +D  N    + V         ++NEF
Sbjct: 380 ILSIDTETTGTE-----PMD-AELVGMSF-----SDAENRAYYVPVPAEREEVLKIVNEF 428

Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALT 488
            P FE+    KV  N  +D  +L+NYG++V G   DTM    +     R    Y      
Sbjct: 429 RPLFENEKSMKVGQNIKYDMIILQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY------ 482

Query: 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR-KLKKDGSAGKISTIAPVEEL 547
                ++E    YQ               I +  + G R K +K+     +  ++P E++
Sbjct: 483 -----LAEIYLHYQ--------------TIHIDKLIGARGKNQKN-----MRDLSP-EDV 517

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
            R        Y+  D+  TLKL   L+K+L E   +              + E   P   
Sbjct: 518 YR--------YACEDADVTLKLKNVLEKELKEQGAE------------HLFYEIEMPLVP 557

Query: 608 ILVKMETEGMLVDREYLSE 626
           +LV +E+ G+L+D E L +
Sbjct: 558 VLVNIESNGVLLDTEALKQ 576


>gi|423304347|ref|ZP_17282346.1| DNA polymerase I [Bacteroides uniformis CL03T00C23]
 gi|423310539|ref|ZP_17288523.1| DNA polymerase I [Bacteroides uniformis CL03T12C37]
 gi|392681710|gb|EIY75067.1| DNA polymerase I [Bacteroides uniformis CL03T12C37]
 gi|392684933|gb|EIY78253.1| DNA polymerase I [Bacteroides uniformis CL03T00C23]
          Length = 951

 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/297 (36%), Positives = 151/297 (50%), Gaps = 25/297 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
            Q  R   D I  + E   +  L+S +I  L    ++ + GR+H S N   T TGRLS+  
Sbjct: 638  QSYRSKHDIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTATGRLSSSN 696

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M++AF +G D 
Sbjct: 697  PNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIEAFLSGHDI 756

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA  +Y    N                       D  A  RRKAK  NF I YG + 
Sbjct: 757  HAATAAKIYKIDIN-----------------------DVTADMRRKAKTANFGIIYGISV 793

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA    VS +EAK+ +D ++    +V  + +   + +R   +V T+  R R  P I S
Sbjct: 794  FGLAERMGVSRQEAKELIDGYFETYPQVKEYMDKSIQVAREQGYVETIFHRKRFLPDINS 853

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFS 1078
                 R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQV    +FS
Sbjct: 854  RNGVVRGYAERNAINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFS 910



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 124/318 (38%), Gaps = 77/318 (24%)

Query: 310 NDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVW-MLTNKYKHL 368
           N A EGTG     SEN N  +LE+L         +  ++D      +++  +LT +    
Sbjct: 335 NFAGEGTG----VSENSNLTRLEMLDV-------DYQLIDTEDKRAEIIQKLLTIE---- 379

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEF 428
           + + DTE    +     P+D  E++  S      +D  N    + V         ++NEF
Sbjct: 380 ILSIDTETTGTE-----PMD-AELVGMSF-----SDAENRAYYVPVPAEREEVLKIVNEF 428

Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALT 488
            P FE+    KV  N  +D  +L+NYG++V G   DTM    +     R    Y      
Sbjct: 429 RPLFENEKSMKVGQNIKYDMIILQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY------ 482

Query: 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQ 548
                ++E    YQ               I + ++ G R     G   K     P E++ 
Sbjct: 483 -----LAEIYLHYQ--------------TIHIDELIGAR-----GKNQKNMRDLPPEDVY 518

Query: 549 REERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI 608
           R        Y+  D+  TLKL   L+K+L E   +              + E   P   +
Sbjct: 519 R--------YACEDADVTLKLKNVLEKELKEQGAE------------HLFYEIEMPLVPV 558

Query: 609 LVKMETEGMLVDREYLSE 626
           LV +E+ G+L+D E L +
Sbjct: 559 LVNIESNGVLLDTEALKQ 576


>gi|374334321|ref|YP_005091008.1| DNA polymerase I [Oceanimonas sp. GK1]
 gi|372984008|gb|AEY00258.1| DNA polymerase I [Oceanimonas sp. GK1]
          Length = 911

 Score =  167 bits (423), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/281 (37%), Positives = 151/281 (53%), Gaps = 30/281 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            L E   +  L S +   LPL    V+  +GR+H S +  NT TGRLS+  PNLQN P   
Sbjct: 609  LMEYRGLSKLKSTYTDKLPLM---VNEHSGRIHTSYHQANTATGRLSSSDPNLQNIPIRT 665

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
             +  +IRQAF+A PG  L+ ADY Q+ELRI+AHL+  + +LDAF  G D H  TA  ++ 
Sbjct: 666  PEGRRIRQAFVAEPGYKLVAADYSQIELRIMAHLSQDQGLLDAFAHGQDIHKATAAEVF- 724

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
                 V   QV                   A +RR+AK +NF + YG +  GLAR   + 
Sbjct: 725  ----GVAVEQV------------------SAEQRRRAKAINFGLIYGMSAFGLARQLGIG 762

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
              EA+  +++++     VL + E  ++++    +V TL GR    P IKS   ++R   E
Sbjct: 763  RNEAQDYMNIYFERYPGVLRYMETTREQASEQGYVSTLFGRRLYLPEIKSKNGARRKGAE 822

Query: 1032 RAAINTPVQGSAADVAMCAMLEISK-NARLKELGWKLLLQV 1071
            RAAIN P+QG+AAD+   AM+ ++     L E   ++L+QV
Sbjct: 823  RAAINAPMQGTAADIIKQAMIRVNDWLGELPEGEVRMLMQV 863


>gi|335040619|ref|ZP_08533744.1| DNA polymerase I [Caldalkalibacillus thermarum TA2.A1]
 gi|334179483|gb|EGL82123.1| DNA polymerase I [Caldalkalibacillus thermarum TA2.A1]
          Length = 881

 Score =  167 bits (423), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/295 (35%), Positives = 166/295 (56%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLNIN-TETGRL 837
            + D +  L     I S I ++  ++ LQ + + G       + G+VH +     T TGRL
Sbjct: 562  SADVLEKLAPQHEIVSKILDYRQLVKLQTTYIEGLLKEINEQTGKVHTTFQQTITATGRL 621

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+    + +I+A DY Q+ELRILAHL+  + +++AF+
Sbjct: 622  SSTDPNLQNIPIRLEEGRKIRQAFVPSREDQVILAADYSQIELRILAHLSQDQGLVEAFR 681

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H++TAM+++   R+ V                 PL+       RR+AK +NF I 
Sbjct: 682  QGEDIHTKTAMDVFHVKRDEV----------------TPLM-------RRQAKAVNFGII 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  +S +EAK  ++ ++     V  + +   K++R D +V TLL R R  
Sbjct: 719  YGISDYGLSQNLNISRKEAKAFIERYFASYPGVKAYMDQIVKKAREDGYVTTLLHRRRYI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R+  ER A+NTP+QG+AAD+   AM+EI++  + ++L  KLLLQV
Sbjct: 779  PEINSCNFNLRSFAERTAMNTPIQGTAADIIKKAMVEIAERLKEEQLSSKLLLQV 833


>gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1]
 gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1]
          Length = 920

 Score =  167 bits (422), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 97/256 (37%), Positives = 145/256 (56%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ + GR+H S +     TGRLS+  PNLQN P   +   KIRQAFIA PG +++ ADY 
Sbjct: 640  VNPRTGRIHTSYHQAVASTGRLSSSDPNLQNIPIRNESGRKIRQAFIAEPGFTMVAADYS 699

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL++ +S++DAF  G D H  TA                  E  G     VP
Sbjct: 700  QIELRIMAHLSDDESLIDAFARGLDIHRATAA-----------------EVMG-----VP 737

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            L +D  +  RR AK +NF + YG +  GLAR   +S E+A+  +D +++    VL + E 
Sbjct: 738  L-EDVTSDMRRSAKAVNFGLIYGMSAFGLARQLGISREQAQAYMDRYFHRYPGVLRYMED 796

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +K++    +V TL GR    P +++ ++ +R   ER AIN P+QGSAAD+   AM++I 
Sbjct: 797  IRKQAHDQGYVETLFGRRLYLPEVRAASKMRRQAAERVAINAPMQGSAADIIKRAMIDID 856

Query: 1056 KNARLKELGWKLLLQV 1071
               R +    ++++QV
Sbjct: 857  TWLRTQPAKIRMIMQV 872


>gi|365859597|ref|ZP_09399453.1| DNA-directed DNA polymerase [Acetobacteraceae bacterium AT-5844]
 gi|363712070|gb|EHL95774.1| DNA-directed DNA polymerase [Acetobacteraceae bacterium AT-5844]
          Length = 963

 Score =  167 bits (422), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/258 (39%), Positives = 145/258 (56%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + +  ++GRVH   ++  T TGRLS+  PNLQN P   ++  +IR+AF+A PG+ L+ AD
Sbjct: 681  AQIDARDGRVHTDFSMAITSTGRLSSTEPNLQNIPIRTEEGVRIRRAFVARPGHVLLAAD 740

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAHLA+  S+  AF    D HSRTA +++ H+    E G+V       DK  
Sbjct: 741  YSQIELRLLAHLADVPSLRSAFAQDEDIHSRTAADIF-HL----EPGKV-------DK-- 786

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+AK +NF I YG +  GLA    ++  EAK  +D ++ +   + T  
Sbjct: 787  ---------EARRRAKTINFGIIYGMSAFGLAARLGIAPGEAKGIIDAYFAQYPGIRTEM 837

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K+E+RI+ +V T  GR      I S   ++R + ERAAIN P QG AA++   AM  
Sbjct: 838  ERLKEEARINGYVLTPFGRKLWIDGISSKDMARRGNAERAAINAPFQGGAAEIIKRAMAR 897

Query: 1054 ISKNARLKELGWKLLLQV 1071
            + K  R   L  K+LLQV
Sbjct: 898  MPKALREAGLQAKMLLQV 915



 Score = 48.9 bits (115), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 120/327 (36%), Gaps = 84/327 (25%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPE----ADFGNGKSCIWVDLLDGGGR---- 422
           A DTE   +D        H +++  S+   P        G+G      D+L+        
Sbjct: 371 ALDTETDSLDAL------HAKLVGISLAIAPGRACYIPLGHGPKPGNGDMLEAAPEAPVQ 424

Query: 423 ----DLLNEFAPFFEDPSIKKVWHNYSFDNHVL-------ENYGLKVSGFHADTMHMARL 471
               + L+   P  EDP   KV HN  +D  VL        N G+ VS    DTM ++  
Sbjct: 425 IPLAEALSALRPMLEDPGTLKVLHNAKYDLEVLGRPLAEGANTGIDVSPVD-DTMLISYS 483

Query: 472 WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
            D+ R   G                                  M ++S++ + G   +  
Sbjct: 484 MDAGRHGHG----------------------------------MDELSLRHL-GHSPIPY 508

Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
           D   G      P  +++ ++     +Y+A D+  TL+L++ LK +L     + DG     
Sbjct: 509 DQVTGTGRARIPFSQVELDK---ATAYAAEDADVTLRLWQLLKPRL-----RTDGA---- 556

Query: 592 KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCP 651
                 Y++  +    +L  ME EG+ VD   L+ I +   A       R  + A +   
Sbjct: 557 ---LALYEQVERRMIGVLRDMEMEGIKVDGTELARIGEDFSARMITLEQRIHELAGRP-- 611

Query: 652 DAKYMNVGSDTQLRQLLFG--GKPNSK 676
                NVGS  QL ++LF   G P  K
Sbjct: 612 ----FNVGSPKQLGEILFDEMGLPGGK 634


>gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
            UPII9-5]
 gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
            UPII9-5]
          Length = 922

 Score =  167 bits (422), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/272 (36%), Positives = 150/272 (55%), Gaps = 26/272 (9%)

Query: 801  IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
            +  L+S FI+ L        + R+H + +   T+TGRLS+  PNLQN PA  ++  +IR 
Sbjct: 627  LSKLLSTFIVGLH--KYIAADHRIHTTFHQTLTQTGRLSSSDPNLQNIPARTEEGRRIRA 684

Query: 860  AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
            AFIA PG  LI ADY Q+ELR+LAHL+   +ML AF A  D H+ TA  ++ H+      
Sbjct: 685  AFIAAPGCILIDADYSQIELRLLAHLSGDTAMLKAFAAKEDIHALTAARVF-HMD----- 738

Query: 920  GQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTV 979
                         PV    D  +  RR  K +NFSI YG +   LA+D  +SV EAK  +
Sbjct: 739  -------------PV----DVTSEHRRVGKTINFSIVYGISAFSLAQDLHISVAEAKNYI 781

Query: 980  DLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPV 1039
              +Y    ++  +     + ++ID +V T+  R R  P +KS   ++R   ER A+NTP+
Sbjct: 782  AEYYATYPQIKAYLNDLVERAKIDGYVETMFKRRRYIPELKSKNYNRRLFGERVAMNTPI 841

Query: 1040 QGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            QG+AAD+   AM+ +++  R K+L   ++LQ+
Sbjct: 842  QGTAADIMRLAMVNLARKLREKKLKSHMILQI 873


>gi|340347219|ref|ZP_08670331.1| DNA-directed DNA polymerase I [Prevotella dentalis DSM 3688]
 gi|433652418|ref|YP_007278797.1| DNA polymerase I [Prevotella dentalis DSM 3688]
 gi|339609789|gb|EGQ14652.1| DNA-directed DNA polymerase I [Prevotella dentalis DSM 3688]
 gi|433302951|gb|AGB28767.1| DNA polymerase I [Prevotella dentalis DSM 3688]
          Length = 920

 Score =  166 bits (421), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 161/317 (50%), Gaps = 32/317 (10%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
            Q+ R+    +  +     +  L+  ++  L    V+ + GR+H S N   T TGRLS+  
Sbjct: 607  QQLRDKAPIVDDILNYRGLKKLLGTYVEALP-KLVNPRTGRIHTSFNQAVTATGRLSSSD 665

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P  + D  +IR+ F+  PG     ADY Q+ELRI+AHL+  ++M++AF+ G D 
Sbjct: 666  PNLQNIPVRDDDGKEIRKCFVPEPGCRFFSADYSQIELRIMAHLSGDENMIEAFREGFDI 725

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H  TA  +                WH E    +  + DA   +R++AK  NF I YG T 
Sbjct: 726  HRATAAKI----------------WHKE----MAAVTDA---QRKQAKQANFGIIYGITT 762

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA+   +   EA++ +D ++    +V  + E  K+++R   +  TL GR R  P I S
Sbjct: 763  FGLAQRMNIGNNEARQLIDDYFATFPKVHAYMEQAKEQARQHGYAETLFGRRRYLPDIVS 822

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSFF- 1080
               + R   ER AIN P+QGS AD+   AM+ I +  + + L  K++LQV    +FS F 
Sbjct: 823  RNATVRGFAERNAINAPIQGSEADIIKLAMIRIWQRFKAEGLHSKMILQVHDELNFSVFP 882

Query: 1081 ------SIIVIVSCQGI 1091
                    IVI   QG+
Sbjct: 883  DEAERVERIVIEEMQGV 899



 Score = 44.3 bits (103), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 87/246 (35%), Gaps = 56/246 (22%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
           +N F   +EDP I KV  N  +D  VL  YG+ V G   DTM    +          Y  
Sbjct: 394 VNIFKSLYEDPEILKVGQNIKYDYEVLRQYGVDVQGPMFDTMLAHYVLQPELHHNMDYMA 453

Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
           E L   R V  E+        +KG       G+ +M+D+  R+  +              
Sbjct: 454 ETLLNYRTVHIEELIG-----AKGR------GQRNMRDLTPRQVYE-------------- 488

Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
                        Y+  D+  TL+L   L+ +L E   +              +++   P
Sbjct: 489 -------------YACEDADVTLRLKNVLEPRLAEAGAE------------RLFRDIEMP 523

Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
              +L  ME  G+ +D   L+   +      E   +   + A K        N+ S  Q+
Sbjct: 524 LVRVLADMELNGVCLDTAALAATRRSFTERMEQYEHHAYELAGKS------FNISSPKQV 577

Query: 665 RQLLFG 670
             +LFG
Sbjct: 578 GDILFG 583


>gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
 gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
          Length = 874

 Score =  166 bits (421), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 162/316 (51%), Gaps = 36/316 (11%)

Query: 761  GCTEETEYKGAVASNNKIFATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSN 816
            G T + +  G  AS      T Q+A E        +  + E   ++ L S ++ PL    
Sbjct: 542  GLTPKGKTPGGAAS------TSQDALERLAGSNPLVDRILEFRKLEKLRSTYLDPL--PK 593

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++  +GR+H +LN + T TGRLS+  PNLQN P       ++R+ F+A PG +L+ ADY 
Sbjct: 594  LADADGRIHTTLNNMATATGRLSSSNPNLQNIPIRGPLGRRMRECFVAGPGKTLVAADYS 653

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAHL+   ++L AF AG D H+RTA  ++                   DKP   
Sbjct: 654  QIELRVLAHLSGEPALLSAFAAGADIHARTASLLF-------------------DKPEAE 694

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            +  D    ERR+AK +NF + YG  P  L+RD  + ++ AK  +  ++     +  + + 
Sbjct: 695  IGPD----ERRQAKTINFGLLYGMGPQKLSRDLGIKLDAAKAFIAKYFERLSGLSAFYDN 750

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              + ++   +V TL GR R  P I+S      +   R AINT VQG AAD+   AML   
Sbjct: 751  IVESAKTQGYVTTLAGRRRLLPDIESKNSQLASQARRQAINTVVQGGAADIIKMAMLAAH 810

Query: 1056 KNARLKELGWKLLLQV 1071
            K+A LK  G  ++LQ+
Sbjct: 811  KDADLKRAGAVMVLQI 826


>gi|345888471|ref|ZP_08839555.1| hypothetical protein HMPREF0178_02329 [Bilophila sp. 4_1_30]
 gi|345040665|gb|EGW44901.1| hypothetical protein HMPREF0178_02329 [Bilophila sp. 4_1_30]
          Length = 874

 Score =  166 bits (421), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/281 (36%), Positives = 152/281 (54%), Gaps = 26/281 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            + AL E   ++ L S ++ PL    + G +GR+  + N + T TGRLS+  PNLQN P  
Sbjct: 567  VDALLEFRKLEKLRSTYLEPL--PRLMGGDGRIRTTFNQLATATGRLSSSNPNLQNIPVR 624

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
                 ++R  F A  G  LI ADY Q+ELR+LAHL+  +++L AF+ G D H+RTA  ++
Sbjct: 625  GALGRRMRACFTAPEGKKLISADYSQIELRVLAHLSRDETLLAAFREGADIHARTASLLF 684

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                               D PP  +  D    +RR AK +NF + YG  P  LA++ K+
Sbjct: 685  -------------------DAPPSEITPD----QRRNAKTINFGLIYGMGPQKLAQELKI 721

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
             + EAK  +  ++   Q +  + E  ++ +R   +V TL GR R  P I++ ++  R+  
Sbjct: 722  PLSEAKAFMARYFERLQGLKNFYENVEEMAREQGYVTTLAGRRRPLPDIQAESQQARSLA 781

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             R AINT +QGSAAD+   AML +  +  L+ L  KLLLQV
Sbjct: 782  RRQAINTLIQGSAADIIKLAMLAVHGDETLRALDAKLLLQV 822


>gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
 gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
          Length = 921

 Score =  166 bits (421), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 104/299 (34%), Positives = 152/299 (50%), Gaps = 25/299 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            Q+ R   + ++ + E   +  LI  +I  L    ++ K G +H S N   T TGRLS+  
Sbjct: 608  QQLRNKHEIVADILEHRGLKKLIGTYIDALP-KLINPKTGHIHTSFNQTITATGRLSSSD 666

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P   +D  +IR+AFI  PG     ADY Q+ELR++AHL+    M+  F  G D 
Sbjct: 667  PNLQNIPIRGEDGKEIRKAFIPEPGCLFFSADYSQIELRVMAHLSQDAEMIKVFSEGKDL 726

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA N+Y                    K P+   ++    ER K+K  NF I YG T 
Sbjct: 727  HAATAANIY--------------------KKPI---EEVTRDERTKSKRANFGIIYGITV 763

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA    +  +EAK  +D +++   +V  + E  K+ +R   +V TL GR R  P I S
Sbjct: 764  FGLAERLDIPRDEAKMLIDGYFDTFPQVHDYMEKSKEVAREKGYVTTLFGRRRYLPDINS 823

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSFF 1080
               + R   ER AIN P+QG+AAD+   AM+ I    + + +  K++LQV    +FS +
Sbjct: 824  HNATVRGFAERNAINAPIQGTAADIIKVAMIRIYNRFKAEGIRSKMILQVHDELNFSVY 882



 Score = 42.7 bits (99), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++N F P +E+P I KV  N  +D  VL NYG+++ G   DTM
Sbjct: 394 IVNIFKPAYENPEILKVGQNLKYDLEVLRNYGIELKGKMWDTM 436


>gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis]
          Length = 932

 Score =  166 bits (421), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 108/266 (40%), Positives = 150/266 (56%), Gaps = 31/266 (11%)

Query: 809  ILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA-LEKDRYKIRQAFIAV-P 865
            +LPL    + G  GR+H S N + T TGRLS+  PNLQN P  LE+ R+ IR+AFIA  P
Sbjct: 641  LLPL----IDGPEGRIHTSFNQSVTATGRLSSTEPNLQNIPVRLEQGRH-IRKAFIAPEP 695

Query: 866  GNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLE 925
            G +L+ ADY Q+ELRILAHL++  S  DAF    D H+RTA  ++      V  G V  E
Sbjct: 696  GWTLLAADYSQIELRILAHLSDDPSFKDAFAKNQDIHTRTASEVF-----DVPMGNVTRE 750

Query: 926  WHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNE 985
                               RR+AK +NF I YG +  GL+RD  V+  EAK+ ++ ++  
Sbjct: 751  M------------------RRRAKAVNFGIVYGISDFGLSRDLGVTRGEAKEYIEGYFRR 792

Query: 986  RQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAAD 1045
               V  + +    E+R    V TLLGR RR P +    + ++N  ER A+NTP+QG+AAD
Sbjct: 793  YHGVRGYIDRIIAEARQQGFVTTLLGRRRRLPDLFVKNKIRQNFGERTAMNTPIQGTAAD 852

Query: 1046 VAMCAMLEISKNARLKELGWKLLLQV 1071
            +   AM++I K  +   L  ++LLQV
Sbjct: 853  IIKAAMVKIPKALKDHGLKTRMLLQV 878


>gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB]
 gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB]
          Length = 901

 Score =  166 bits (421), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 101/278 (36%), Positives = 154/278 (55%), Gaps = 35/278 (12%)

Query: 800  SIDSLISNFI--LPLQGSNVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYK 856
            S+  L S +I  LP   S ++ + GR+H S N     TGRLS+  PNLQN P    +  +
Sbjct: 604  SMAKLKSTYIDALP---SLINIRTGRIHTSYNQTVAATGRLSSSNPNLQNIPIRTLEGKR 660

Query: 857  IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY---PHI 913
            IRQAFIA PG +++ ADY Q+ELR+LAHL+    +++AF AG D HSRTA +++   P +
Sbjct: 661  IRQAFIAPPGWAIVSADYSQIELRVLAHLSEDPVLINAFAAGEDIHSRTAADVFGVFPEM 720

Query: 914  RNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVE 973
             NA                            RR+AK++NF + YG +  GL+R+  +  +
Sbjct: 721  INA--------------------------EMRRQAKVINFGVLYGMSAFGLSRELGIPQK 754

Query: 974  EAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERA 1033
            +A+  +D ++ + + V T+ +   +++R   +V TLL R R  P I S+  + R   ER 
Sbjct: 755  QAQAYIDGYFKKYESVKTYLDGILQQARERGYVTTLLNRRRYLPEINSVNPAVRQLAERM 814

Query: 1034 AINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AIN P+QG+AAD+   AML I+   R K +   + +QV
Sbjct: 815  AINAPIQGTAADLIKMAMLRIADLIREKGMKSAMTMQV 852


>gi|410464497|ref|ZP_11317926.1| DNA polymerase I [Desulfovibrio magneticus str. Maddingley MBC34]
 gi|409982399|gb|EKO38859.1| DNA polymerase I [Desulfovibrio magneticus str. Maddingley MBC34]
          Length = 879

 Score =  166 bits (420), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 109/318 (34%), Positives = 159/318 (50%), Gaps = 36/318 (11%)

Query: 759  DSGCTEETEYKGAVASNNKIFATEQEARE----ACDAISALCEVCSIDSLISNFILPLQG 814
            D G     +  G  AS      T Q+A E    A   +  + E   ++ L S ++ P+  
Sbjct: 545  DLGLKAHGKTPGGAAS------TSQDALERLAGAHPLVDRILEFRKLEKLRSTYLAPMPA 598

Query: 815  SNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
              ++  + R+H +LN + T TGRLS+  PNLQN P   +   ++R  F A PGN L+ AD
Sbjct: 599  --LADADSRIHTTLNNMATATGRLSSSNPNLQNIPIRGEFGRRMRDCFTAGPGNQLVAAD 656

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAHL+   ++LDAF  G D H+RTA  ++                   DKP 
Sbjct: 657  YSQIELRVLAHLSGEPALLDAFAHGADIHARTAAILF-------------------DKPE 697

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
              +  D    ERR+AK +NF + YG  P  L+RD  + ++ AK  +  ++     +  + 
Sbjct: 698  EAIAPD----ERRQAKTINFGLLYGMGPQKLSRDLGIKLDAAKAFIARYFERLPGLSAFY 753

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E   + ++ D  V TL GR R  P I S      +   R AINT VQG AAD+   AML 
Sbjct: 754  EGIVEAAKRDGFVTTLAGRRRLLPDISSANSQLSSQARRQAINTVVQGGAADIIKMAMLA 813

Query: 1054 ISKNARLKELGWKLLLQV 1071
             + +A L  LG  L+LQ+
Sbjct: 814  AAGDAELAGLGAVLVLQI 831


>gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
 gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
          Length = 874

 Score =  166 bits (420), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 102/281 (36%), Positives = 152/281 (54%), Gaps = 26/281 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            + AL E   ++ L S ++ PL    + G +GR+  + N + T TGRLS+  PNLQN P  
Sbjct: 567  VDALLEFRKLEKLRSTYLEPL--PRLMGGDGRIRTTFNQLATATGRLSSSNPNLQNIPVR 624

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
                 ++R  F A  G  LI ADY Q+ELR+LAHL+  +++L AF+ G D H+RTA  ++
Sbjct: 625  GALGRRMRACFTAPEGKKLISADYSQIELRVLAHLSRDETLLAAFREGADIHARTASLLF 684

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                               D PP  +  D    +RR AK +NF + YG  P  LA++ K+
Sbjct: 685  -------------------DAPPSEITPD----QRRNAKTINFGLIYGMGPQKLAQELKI 721

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
             + EAK  +  ++   Q +  + E  ++ +R   +V TL GR R  P I++ ++  R+  
Sbjct: 722  PLSEAKAFMARYFERLQGLKHFYENVEEMAREQGYVTTLAGRRRPLPDIQAESQQARSLA 781

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             R AINT +QGSAAD+   AML +  +  L+ L  KLLLQV
Sbjct: 782  RRQAINTLIQGSAADIIKLAMLAVHGDETLRTLDAKLLLQV 822


>gi|387773168|ref|ZP_10128763.1| DNA-directed DNA polymerase [Haemophilus parahaemolyticus HK385]
 gi|386905208|gb|EIJ69979.1| DNA-directed DNA polymerase [Haemophilus parahaemolyticus HK385]
          Length = 950

 Score =  166 bits (420), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 160/306 (52%), Gaps = 32/306 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   E+ A+E       L E   +  L S +   LP     ++ K GRVH 
Sbjct: 626  KGAPSTNEEVL--EELAQEGHIVPKLLIEHRGLSKLKSTYTDKLP---QMINPKTGRVHT 680

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 681  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYKIVAADYSQIELRIMAHL 740

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            A+ + ML AF  G D H  TA  ++         G  L E   E              +R
Sbjct: 741  AHDEGMLKAFTEGKDIHRSTAAEIF---------GVSLEEVTNE--------------QR 777

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S +EA+  +D ++N    VL +    K ++    +
Sbjct: 778  RNAKAINFGLIYGMSEFGLSNQLGISRQEARSYMDAYFNRYPNVLQFMTDIKTKAAEQGY 837

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TLLGR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I K A L +   
Sbjct: 838  VETLLGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDK-AILGDENI 896

Query: 1066 KLLLQV 1071
            K+++QV
Sbjct: 897  KMIMQV 902



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 145/381 (38%), Gaps = 92/381 (24%)

Query: 325 NENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQE 384
            E+  K+EI RSK    Y  V +   ++      W+   + + LV A DTE   +DV   
Sbjct: 319 TESFAKVEIDRSK----YETVTIETQLTK-----WIKKIQKEKLV-AVDTETNALDVMSA 368

Query: 385 TPVD------HGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDL----------LNEF 428
             V        GE     +    E     G+  ++V+     G +L          L + 
Sbjct: 369 ELVGISFGLASGEACYIPLTHKEEVSEQAGQGDLFVESTATLGYELVKNQLDLTACLAQL 428

Query: 429 APFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALT 488
            P  ED  IKK+  N  +D  V  N+G++V G   DTM  +   +S+ R       E   
Sbjct: 429 KPILEDEQIKKIGQNIKYDLTVFANHGIEVQGVAFDTMLESYTQNSTGRHNMDDLAERYL 488

Query: 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQ 548
           G + +  E+                  GK       G+ +L  D  A  +++        
Sbjct: 489 GHKTIAFEE----------------IAGK-------GKNQLTFDKIALDVAS-------- 517

Query: 549 REERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI 608
                    Y+A D+  T+KL+++L  +L         +  P  ++   + +   P   +
Sbjct: 518 --------EYAAEDADVTMKLHQTLFPEL---------EKTP--TLLKLFNDIEMPLVRV 558

Query: 609 LVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
           L  +E  G+L+D + L     EIE+   AE EA V         H    +  N+ S  QL
Sbjct: 559 LSHIERNGVLIDPQKLLAQSQEIEQ-RLAEVEAEV---------HQAAGQEFNLASTKQL 608

Query: 665 RQLLFG--GKPNSKDDSESLP 683
           +++LF   G P  K   +  P
Sbjct: 609 QEILFEKLGLPVKKKTPKGAP 629


>gi|406990297|gb|EKE09975.1| hypothetical protein ACD_16C00099G0033 [uncultured bacterium]
          Length = 899

 Score =  166 bits (420), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 140/259 (54%), Gaps = 24/259 (9%)

Query: 814  GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA 872
               ++GK GRVH S  +  T TGRL++  PNLQN P   ++  KIR AF+A PG  L+  
Sbjct: 617  AQQINGKTGRVHTSYAMTATSTGRLASSEPNLQNIPIRTEEGKKIRSAFLAAPGKKLLSV 676

Query: 873  DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKP 932
            DY Q+ELR+LAH+AN   +  AFK G D H+ TA +++      V   +V  E       
Sbjct: 677  DYSQIELRLLAHMANLPELQKAFKEGKDIHAETASHVF-----GVSLSEVTPEL------ 725

Query: 933  PVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
                        R++AK +NF I YG +P GLAR   +S E A + +  ++     +  +
Sbjct: 726  ------------RQRAKAINFGIVYGISPFGLARQLGISKENAAEYIQTYFKCYPGIQDY 773

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             E  K+E+R   +V TLLGR    P I S   ++R+  ER AIN P+QG  AD+   AM+
Sbjct: 774  VERVKQEAREKGYVTTLLGRRCYIPDIHSRDPNRRSFAERQAINAPLQGGNADIIKKAMI 833

Query: 1053 EISKNARLKELGWKLLLQV 1071
            ++ +  + K L   +LLQV
Sbjct: 834  KLYRLLKEKHLEAHMLLQV 852


>gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
 gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
          Length = 953

 Score =  166 bits (419), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 157/305 (51%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
            + T +E  E+       I  + E   +  L+S +I  L    ++ + GR+H S N   T 
Sbjct: 632  YVTSEEVLESLRGKHAVIGKILEYRGLKKLLSTYIDALP-QLINSRTGRIHTSFNQAVTS 690

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 691  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNMID 750

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y          ++ +E    D              RRKAK  NF
Sbjct: 751  AFLSGHDIHAATAAKIY----------KIDIEEVTSDM-------------RRKAKTANF 787

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    VS +EAK+ +D ++    +V  + +   + +R + +V T+  R 
Sbjct: 788  GIIYGISVFGLAERLNVSRQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVETIFHRK 847

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +     +L  K++LQV  
Sbjct: 848  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMAHIYQRITSNKLKAKMILQVHD 907

Query: 1074 FFSFS 1078
              +FS
Sbjct: 908  ELNFS 912


>gi|336322733|ref|YP_004602700.1| DNA polymerase I [Flexistipes sinusarabici DSM 4947]
 gi|336106314|gb|AEI14132.1| DNA polymerase I [Flexistipes sinusarabici DSM 4947]
          Length = 793

 Score =  166 bits (419), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 144/259 (55%), Gaps = 24/259 (9%)

Query: 814  GSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA 872
            G  V+ K GRVH + N + T TGRLS+  PNLQN P   K   K+R AFI   G SLI  
Sbjct: 510  GDYVNSKTGRVHSTFNQVGTATGRLSSSNPNLQNIPQRGKIASKVRSAFIPEDGYSLISF 569

Query: 873  DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKP 932
            DY Q+ELR+LAHL+  +++L+A+K   D H +TA +++    N  E              
Sbjct: 570  DYSQIELRLLAHLSGDETLLEAYKKDADIHKKTAASIF----NIDE-------------- 611

Query: 933  PVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
                 KD  ++ RR AK +NF I YG +P GLARD  VS +EAK+ +D ++    +V ++
Sbjct: 612  -----KDVDSNLRRIAKAVNFGIIYGLSPYGLARDTGVSQKEAKEFIDKYFKLYPKVDSY 666

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             +   K ++   +  TL GR R    + S  ++  +  ER AIN P+QGSAAD+   AML
Sbjct: 667  IKDALKRAKEQGYTETLFGRKRFVKELSSKNKALSSRAERIAINAPIQGSAADIIKKAML 726

Query: 1053 EISKNARLKELGWKLLLQV 1071
            +       K++  +L+LQV
Sbjct: 727  DTFAYLADKKVNGRLILQV 745


>gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
 gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
          Length = 920

 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 157/307 (51%), Gaps = 29/307 (9%)

Query: 779  FATEQEAREACD----AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
            F T +E  +  +     ++ + E   +  L+  ++  L    ++ + G +H S N   T 
Sbjct: 599  FVTSEEVLQQLENKSPIVAKILEYRGLKKLLGTYVDALPKL-INPRTGHIHTSFNQAITA 657

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P   +D  +IR+ FI  PG     ADY Q+ELR++AHL++ K+M++
Sbjct: 658  TGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKNMIE 717

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF  G D H+ TA  +Y                    K P+   ++    ER KAK  NF
Sbjct: 718  AFMHGYDIHAATAAKIY--------------------KKPI---EEVTRDERNKAKRANF 754

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG T  GLA+   +   EAK+ ++ ++    +V  + E  K ++R   +  TL  R 
Sbjct: 755  GIIYGITTYGLAQRLDIDNREAKELIEGYFETFPQVYEYMERAKADARAKGYAETLFHRR 814

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S   + R + ER AIN P+QGSAAD+   AM+ IS   + + +  KL+LQV  
Sbjct: 815  RYLPDINSHNATVRGYAERNAINAPIQGSAADIIKVAMIRISDRFKRENIHSKLILQVHD 874

Query: 1074 FFSFSFF 1080
              +FS +
Sbjct: 875  ELNFSVY 881



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 92/254 (36%), Gaps = 64/254 (25%)

Query: 421 GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEG 480
            + ++N F P +E+P I KV  N  +D  VL NYG+ + G   DTM    +     R   
Sbjct: 390 AQKIVNIFKPIYENPDILKVGQNLKYDLEVLHNYGVTLKGKMFDTMLAHYVIQPELRHNM 449

Query: 481 GYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKIST 540
            Y  E L   R +               + DE                            
Sbjct: 450 DYMAETLLNYRTI---------------HIDE---------------------------L 467

Query: 541 IAPVEELQREEREL----WISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
           I P  + Q+  REL       Y+A D+  TL+L   L+ KL EM  +            D
Sbjct: 468 IGPRGKNQKSMRELDPKEVYEYAAEDADITLQLKNVLETKLKEMECE------------D 515

Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYM 656
            +     P   +L ++E  G+++D + L E   +     +   +   + A +        
Sbjct: 516 LFWNIEMPLMPVLAEIEMNGVVIDTDSLRETSAILTKRMQDYEHEIYQLAGEE------F 569

Query: 657 NVGSDTQLRQLLFG 670
           N+ S  Q+  +LFG
Sbjct: 570 NISSPKQVGDILFG 583


>gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
 gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
          Length = 920

 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 151/299 (50%), Gaps = 25/299 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            Q+ R     I  +     +  L+S ++  L    ++ + GR+H S N   T TGRLS+  
Sbjct: 607  QQLRSKSPIIDEILNYRGLKKLLSTYVDALP-KLINPRTGRIHTSFNQTVTATGRLSSSD 665

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P  + D  +IR+ FI  PG     ADY Q+ELRI+AHL+  ++M++AF+ G D 
Sbjct: 666  PNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENMIEAFREGFDI 725

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA  +                WH +     P       +ER+KAK  NF I YG T 
Sbjct: 726  HAATAARI----------------WHKDIGEVTP-------AERKKAKQANFGIIYGITT 762

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA+   +S  EA+  +D ++     V  + E  K+ +R   +  TL  R R  P I S
Sbjct: 763  YGLAQRMDISNGEARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINS 822

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSFF 1080
               + R   ER AIN P+QGS AD+   AM+ I +  + + +  K++LQV    +FS F
Sbjct: 823  HNATVRGFAERNAINAPIQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVF 881



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 85/243 (34%), Gaps = 56/243 (23%)

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
           F P +EDP I KV  N  +D  VL +YG++V+G   DTM    L     R    Y  E  
Sbjct: 397 FKPLYEDPEILKVGQNIKYDIEVLRHYGVEVAGPMFDTMIAHYLLQPELRHNMDYMAEVY 456

Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
            G R V  E+       +     ++  M  +S  DI+                       
Sbjct: 457 LGYRTVHIEEL------IGPRGRNQKNMRDLSPTDIY----------------------- 487

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
                     Y+  D+  TL+L   L+ KL E              +   + +   P   
Sbjct: 488 ---------EYACEDADITLRLKNVLEPKLDE------------AGVARLFHDIEMPLVG 526

Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
           +L  ME  G+ +D E L E  +V             + A +        N+ S  Q+  +
Sbjct: 527 VLADMELNGVCLDTEALHETSEVFNKRMTTIEQHIYELAGEQ------FNISSPRQVGDI 580

Query: 668 LFG 670
           LFG
Sbjct: 581 LFG 583


>gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17]
 gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17]
          Length = 920

 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 151/299 (50%), Gaps = 25/299 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            Q+ R     I  +     +  L+S ++  L    ++ + GR+H S N   T TGRLS+  
Sbjct: 607  QQLRSKSPIIDEILNYRGLKKLLSTYVDALP-KLINPRTGRIHTSFNQTVTATGRLSSSD 665

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P  + D  +IR+ FI  PG     ADY Q+ELRI+AHL+  ++M++AF+ G D 
Sbjct: 666  PNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENMIEAFREGFDI 725

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA  +                WH +     P       +ER+KAK  NF I YG T 
Sbjct: 726  HAATAARI----------------WHKDIGEVTP-------AERKKAKQANFGIIYGITT 762

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA+   +S  EA+  +D ++     V  + E  K+ +R   +  TL  R R  P I S
Sbjct: 763  YGLAQRMDISNGEARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINS 822

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSFF 1080
               + R   ER AIN P+QGS AD+   AM+ I +  + + +  K++LQV    +FS F
Sbjct: 823  HNATVRGFAERNAINAPIQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVF 881



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 87/243 (35%), Gaps = 56/243 (23%)

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
           F P +EDP I KV  N  +D  VL +YG++V+G   DTM    L     R    Y  E  
Sbjct: 397 FKPLYEDPEILKVGQNIKYDIEVLRHYGVEVAGPMFDTMIAHYLLQPELRHNMDYMAEVY 456

Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
            G R V  E+       +     ++  M  +S  DI+                       
Sbjct: 457 LGYRTVHIEEL------IGPRGRNQKNMRDLSPTDIY----------------------- 487

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
                     Y+  D+  TL+L   L+ KL E              +   +++   P   
Sbjct: 488 ---------EYACEDADITLRLKNVLEPKLDE------------AGVARLFRDIEMPLVG 526

Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
           +L  ME  G+ +D E L E  +V      A      + A +        N+ S  Q+  +
Sbjct: 527 VLADMELNGVCLDTEALHETSEVFNKRMTAIEQHIYELAGEQ------FNISSPRQVGDI 580

Query: 668 LFG 670
           LFG
Sbjct: 581 LFG 583


>gi|402308918|ref|ZP_10827920.1| DNA-directed DNA polymerase [Prevotella sp. MSX73]
 gi|400374497|gb|EJP27415.1| DNA-directed DNA polymerase [Prevotella sp. MSX73]
          Length = 920

 Score =  165 bits (418), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 151/299 (50%), Gaps = 25/299 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            Q+ R     I  +     +  L+S ++  L    ++ + GR+H S N   T TGRLS+  
Sbjct: 607  QQLRSKSPIIDEILNYRGLKKLLSTYVDALP-KLINPRTGRIHTSFNQTVTATGRLSSSD 665

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P  + D  +IR+ FI  PG     ADY Q+ELRI+AHL+  ++M++AF+ G D 
Sbjct: 666  PNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENMIEAFREGFDI 725

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA  +                WH +     P       +ER+KAK  NF I YG T 
Sbjct: 726  HAATAARI----------------WHKDIGEVTP-------AERKKAKQANFGIIYGITT 762

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA+   +S  EA+  +D ++     V  + E  K+ +R   +  TL  R R  P I S
Sbjct: 763  YGLAQRMDISNGEARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINS 822

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSFF 1080
               + R   ER AIN P+QGS AD+   AM+ I +  + + +  K++LQV    +FS F
Sbjct: 823  HNATVRGFAERNAINAPIQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVF 881



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 87/243 (35%), Gaps = 56/243 (23%)

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
           F P +EDP I KV  N  +D  VL +YG++V+G   DTM    L     R    Y  E  
Sbjct: 397 FKPLYEDPEILKVGQNIKYDIEVLRHYGVEVAGPMFDTMIAHYLLQPELRHNMDYMAEVY 456

Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
            G R V  E+       +     ++  M  +S  DI+                       
Sbjct: 457 LGYRTVHIEEL------IGPRGRNQKNMRDLSPTDIY----------------------- 487

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
                     Y+  D+  TL+L   L+ KL E    L             +++   P   
Sbjct: 488 ---------EYACEDADITLRLKNVLEPKLDEAGVTL------------LFRDIEMPLVG 526

Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
           +L  ME  G+ +D E L E  +V      A      + A +        N+ S  Q+  +
Sbjct: 527 VLADMELNGVCLDTEALHETSEVFNKRMTAIEQHIYELAGEQ------FNISSPRQVGDI 580

Query: 668 LFG 670
           LFG
Sbjct: 581 LFG 583


>gi|374814633|ref|ZP_09718370.1| DNA polymerase I [Treponema primitia ZAS-1]
          Length = 975

 Score =  165 bits (418), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/398 (31%), Positives = 200/398 (50%), Gaps = 44/398 (11%)

Query: 679  SESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALK 738
            S SL + R  ++P    ++AE +    K     LR  GV+L TE+        +  D  K
Sbjct: 569  SGSLGLFRDLEMPLLP-ILAEMEGLGIKIEPKVLRDFGVELSTEL------DQIQADTYK 621

Query: 739  TLARNISAEYDCVDGAHDLDDSGCTEETEYKGA---VASNNKIFATEQEAREACDAISA- 794
             +    +     +     L D   TE     G       +  +   E+ ARE  D + A 
Sbjct: 622  LVGHEFN-----LASPKQLQDVLFTERKLKPGKKTKTGYSTDVSVLEELARE--DPVPAK 674

Query: 795  LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKD 853
            +    ++  L S ++  L  ++++ K GR+H + +   T TGRLS+R PNLQN P  +++
Sbjct: 675  ILRHRTLAKLKSTYVDAL--ADIADKEGRLHTNFVQTGTATGRLSSREPNLQNIPIRDEE 732

Query: 854  RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
              +IR+AFIA PG  LI ADY Q+EL +LAHL+  ++++ AFK G D H+RTA  ++   
Sbjct: 733  GRRIREAFIAKPGCVLISADYSQIELVVLAHLSQDENLIAAFKGGKDVHARTAALIF--- 789

Query: 914  RNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVE 973
                          G D+      KD  + +RR AK +NF + YG +   L+ +  +S  
Sbjct: 790  --------------GIDE------KDVQSDQRRIAKTINFGVMYGMSAFRLSNELNISRT 829

Query: 974  EAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERA 1033
            EA   ++ ++     + ++ +   +++    +  T+LGR R  PAI S  ++++   ER 
Sbjct: 830  EAASFIEAYFKTYAGIRSFIDELIRKTEETGYASTILGRRRYIPAINSRNKTEKAGAERV 889

Query: 1034 AINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            A+NTP+QGSAAD+   AML + K    ++   KLLLQV
Sbjct: 890  AVNTPIQGSAADIVKTAMLNLDKRLTKEKSTAKLLLQV 927


>gi|423711912|ref|ZP_17686217.1| DNA polymerase I [Bartonella washoensis Sb944nv]
 gi|395412760|gb|EJF79240.1| DNA polymerase I [Bartonella washoensis Sb944nv]
          Length = 968

 Score =  165 bits (418), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/268 (37%), Positives = 146/268 (54%), Gaps = 32/268 (11%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIRQAFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRQAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+AN  ++ +AF  G D H+ TA  M+             
Sbjct: 732  PEGHVLLSADYSQIELRILAHIANIDALKEAFAQGQDIHAITASQMFG------------ 779

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                      +P+ K+  +  RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 780  ----------MPI-KEMPSDIRRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R   +V T+ GR   +P IK+  +  R   ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMETTKAFARQHGYVQTIFGRRIHYPEIKANNQQVRAFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AD+   AM+ +      ++L  K+LLQV
Sbjct: 889  ADIIRRAMIHMEDALEKEKLSAKMLLQV 916



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 99/246 (40%), Gaps = 57/246 (23%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
           L    P  ++ ++ K+  N  +D  V++  G+ +  F  DTM ++   D+          
Sbjct: 439 LKLLKPILQNQAVLKIGQNMKYDWLVMKQQGIVMRSFD-DTMLLSYALDAG--------- 488

Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
            ALT +   +SE    Y+               I+ KD+    K        KIS+ A V
Sbjct: 489 -ALTHNMDALSERWLGYKP--------------IAYKDLTHNGK--------KISSFAQV 525

Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
           +  Q         Y+A D+  TL+L++ LK +L+             K M   Y+   +P
Sbjct: 526 DLKQAT------FYAAEDADITLRLWQVLKPQLV------------AKGMTKIYERLDRP 567

Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
             E+L +ME  G+L+DR+ L       R   E A   F      +    +  N+ S  QL
Sbjct: 568 LIEVLARMEERGILIDRQIL------LRLSGELAQAAFILEEEIYQLAGEKFNIASPKQL 621

Query: 665 RQLLFG 670
             +LFG
Sbjct: 622 GNILFG 627


>gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
 gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
          Length = 924

 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 154/302 (50%), Gaps = 34/302 (11%)

Query: 777  KIFATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN- 829
            K+ +T Q+  E      D    + E   +  L SN++  LPL    ++   GRVH + + 
Sbjct: 602  KVISTAQDVLEELAAHNDVPRLVLEFRQLAKLKSNYVDSLPL----LADSQGRVHTTFHQ 657

Query: 830  INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCK 889
            + T TGRLS+  PNLQN P       +IR AFIA PG  L+ ADY Q+ELR++AH +   
Sbjct: 658  VGTATGRLSSTNPNLQNIPVRTALGREIRAAFIAAPGRKLLSADYSQIELRLMAHFSEDP 717

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
             +L+A+  G D H+ TA  ++     A++                          R +AK
Sbjct: 718  LLLNAYSTGQDIHTLTASEVFGVAPEAMDK-----------------------ETRNRAK 754

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
             +NF I YG +P GLA+   +   EA++ +D ++   Q V  + +   +++R +  V TL
Sbjct: 755  AVNFGIVYGISPFGLAQQLGIDQHEARQYIDTYFARYQGVRAYIDRVLEQTRREQRVRTL 814

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
             GR R  P I+S   +QR   ER A+NTP+QG+AAD+   AM+ I    + K L   + L
Sbjct: 815  FGRVRPIPDIQSRNANQRGFAERTAVNTPLQGTAADLIKLAMIRIDARIKKKNLQTLMTL 874

Query: 1070 QV 1071
            QV
Sbjct: 875  QV 876


>gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
 gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
          Length = 952

 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 155/305 (50%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
            + T +E  E+  +    I  + E   +  L+S +I  L    ++ + GR+H S N   T 
Sbjct: 631  YVTSEEVLESLRSKHAIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTA 689

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 690  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMID 749

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y    N                       D  A  RRKAK  NF
Sbjct: 750  AFLSGYDIHAATAAKIYKVDIN-----------------------DVTADMRRKAKTANF 786

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R + +V T+  R 
Sbjct: 787  GIIYGISVFGLAERMNVPRQEAKELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHRK 846

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQV  
Sbjct: 847  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMSLICQRLQSNNLKAKMILQVHD 906

Query: 1074 FFSFS 1078
              +FS
Sbjct: 907  ELNFS 911



 Score = 47.8 bits (112), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 80/203 (39%), Gaps = 50/203 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++NE  P +E+ +  KV  N  +D  VL+NYG++V G   DTM    +     R    Y 
Sbjct: 424 IVNELRPLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY- 482

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
                     ++E    YQ               I + ++ G R     G   K     P
Sbjct: 483 ----------LAEIYLQYQ--------------TIHIDELIGAR-----GKNQKNMRDLP 513

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            E++ R        Y+  D+  TLKL   L+K+L E S +              + E   
Sbjct: 514 AEDVYR--------YACEDADVTLKLKNVLEKELKEQSAE------------HLFYEIEM 553

Query: 604 PFGEILVKMETEGMLVDREYLSE 626
           P   +LV +E+ G+ +D E L +
Sbjct: 554 PLVPVLVNIESNGVRIDTEALRQ 576


>gi|398344473|ref|ZP_10529176.1| DNA polymerase I [Leptospira inadai serovar Lyme str. 10]
          Length = 871

 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 156/301 (51%), Gaps = 34/301 (11%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            ++T+ E  E        I  L +      LIS ++  L  + VS K+GR+H + N+    
Sbjct: 549  YSTDHEVLEELLGEHPIIEKLLDYRKYTKLISTYVETLP-TMVSAKDGRIHTNYNMTIAA 607

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLANCKSML 892
            TGRLS+  PNLQN P  EK+   IR+ FI+   +  L+  DY Q+ELRI+AH++   +ML
Sbjct: 608  TGRLSSTDPNLQNIPIREKEGRLIRKGFISGHKDFELLSLDYSQIELRIMAHVSGDPAML 667

Query: 893  DAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLN 952
            DA+K G D H RTA  +Y      V    V  E                   R KAK++N
Sbjct: 668  DAYKKGIDIHKRTASALY-----GVSESDVTPEM------------------RDKAKVVN 704

Query: 953  FSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGR 1012
            FS+ YG TP GL+R+ +VS +EAK  ++ +  +   V  + +          +V TL GR
Sbjct: 705  FSVIYGVTPYGLSRNLRVSRDEAKGFIERYLTQYPGVQKYMDETIAFCEEKGYVETLKGR 764

Query: 1013 ARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQ 1070
             R  P I S  R  +    R AINTP+QG+ AD+   AM+ I K  R+ + GW  KLLLQ
Sbjct: 765  RRPVPDINSTNRMSKEAARRVAINTPIQGTCADMIKIAMMHIHK--RIADQGWKSKLLLQ 822

Query: 1071 V 1071
            V
Sbjct: 823  V 823



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 97/242 (40%), Gaps = 56/242 (23%)

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
             P   DPSI KV  N  +D  VLEN+G +V     DTM  + +     R    ++++ L
Sbjct: 349 LGPVLSDPSIPKVGQNIKYDLIVLENHGFEVGNIVFDTMLASYILQPESRH---HNMDDL 405

Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
                  +++   YQ               I   D+ G  K KK+              L
Sbjct: 406 -------AKELLNYQT--------------IHYSDLVGTGKNKKN--------------L 430

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
              E E    Y++ D+  TL+LY SL+K            PV    M   Y+E   P   
Sbjct: 431 WEVELEKVSEYASEDADITLRLYNSLRK------------PVKDSGMESVYKEIDLPLIR 478

Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
           +L  ME  G+ +D  Y +E+ K  + E +  V    K+A +        N+ S  +L+++
Sbjct: 479 VLADMEKAGIAIDAGYFAELSKDFQREVKDLVRHIHKYAGRE------FNIASTKELQKV 532

Query: 668 LF 669
           LF
Sbjct: 533 LF 534


>gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
 gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
          Length = 855

 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/256 (37%), Positives = 138/256 (53%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH   N   T TGR+S+  PNLQN P   ++  KIR+AFIA  G   +  DY 
Sbjct: 575  INSQTGRVHTKFNPTGTATGRISSSEPNLQNIPIKSEEGRKIRRAFIADDGYYFVSLDYS 634

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+    ++ AF+ G D H RTA  ++    + V+                 
Sbjct: 635  QIELRIMAHLSQEPKLISAFQKGEDIHRRTAAEIFGVPEDEVDD---------------- 678

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            LL       R +AK +NF I YG +  GL+    ++ EEA+K +D ++     V  + + 
Sbjct: 679  LL-------RSRAKAVNFGIIYGISSFGLSETASITPEEAEKFIDSYFKHYPRVKLFIDK 731

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
               E+R   +V TL GR R  P I+S+ +  RN  ER AIN P+QG+AAD+   AM+EI 
Sbjct: 732  TIYEAREKLYVKTLFGRKRYIPEIRSINKQVRNAYERIAINAPIQGTAADIIKLAMIEIY 791

Query: 1056 KNARLKELGWKLLLQV 1071
            K    K L  ++LLQ+
Sbjct: 792  KEIEEKNLKSRILLQI 807


>gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99]
 gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99]
          Length = 917

 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/247 (39%), Positives = 135/247 (54%), Gaps = 27/247 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ ++GR+H S +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 632  LPLM---VNAQSGRIHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAREGKK 688

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF AG D H  TA  ++    + V T Q       
Sbjct: 689  VLAADYSQIELRIMAHLSQDKGLLTAFAAGKDIHRATAAEVFDVDFDEVTTEQ------- 741

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR+AK +NF + YG +  GLA+   +S  EA+K +D ++     
Sbjct: 742  ----------------RRRAKAVNFGLIYGMSAFGLAKQLDISRPEAQKYIDTYFKRYPG 785

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  + E+    +V TL GR    PAIK     +R   ERAAIN P+QG+AAD+  
Sbjct: 786  VLKYMEETRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIK 845

Query: 1049 CAMLEIS 1055
             AM+ I+
Sbjct: 846  KAMINIA 852



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 104/402 (25%)

Query: 278 RNSEIECFEDGSSYTPPPKLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSK 337
           R+  I+CF +          + FKR   +   N    G+G+++K ++ E      +++  
Sbjct: 272 RDELIKCFAE----------MEFKRWLAEVLDNKT--GSGKDEKTTDEE------VIKQD 313

Query: 338 LASFYSNVMVVDNVSAAKKVVWM--LTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICF 395
           + + Y+ +   + +      +W+  LTN    L+ A DTE   ++  +   V     I F
Sbjct: 314 IKTEYTTIYTHEELD-----LWIDKLTNA--DLI-AIDTETTSLNYMEAKLVG----ISF 361

Query: 396 SIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
           +I +G  A    G      D LD   +    + L +  P  E+P +KKV  N  +D  + 
Sbjct: 362 AIEAGKAAYLPLGH-----DYLDAPKQLDQAEALAKLKPLLENPELKKVGQNLKYDISIF 416

Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
            N G+K+ G   DTM  + +++S                               +K N D
Sbjct: 417 ANVGIKLQGIAFDTMLESYVFNSV-----------------------------ATKHNMD 447

Query: 512 EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWIS--YSAFDSINTLKL 569
           +     +++K   G + +  +  AGK      V++L   + +L I+  Y+A D+  TL+L
Sbjct: 448 D-----LALK-YLGHKNISFEEIAGK-----GVKQLTFNQIDLEIAAPYAAEDADITLRL 496

Query: 570 YKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLS-EI 627
           ++ L        W +L+ +P     +   + +   P  +IL  +E  G+L+D   L  + 
Sbjct: 497 HQHL--------WPRLEKEP----QLAAVFTDIELPLIQILSDIERGGVLIDGMMLGQQS 544

Query: 628 EKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
           E++AR   E     F     K        N+ S  QL+ L F
Sbjct: 545 EELARTIDELEQKAFEIAGEK-------FNLSSPKQLQALFF 579


>gi|408421334|ref|YP_006762748.1| DNA polymerase I PolA [Desulfobacula toluolica Tol2]
 gi|405108547|emb|CCK82044.1| PolA: DNA polymerase I [Desulfobacula toluolica Tol2]
          Length = 911

 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/256 (37%), Positives = 142/256 (55%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GR+H S N   T TGRLS+  PNLQN P  +K+  +IR+AFI   G++LI ADY 
Sbjct: 631  INKETGRIHTSFNQTITVTGRLSSSHPNLQNIPIRKKEGKEIRKAFIPKKGHTLISADYS 690

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH A    +++AF  G D H+RTA+ ++          QVL E+         
Sbjct: 691  QIELRILAHYAEDDILIEAFNEGEDIHTRTALEVF----------QVLPEF--------- 731

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                  A  R +AK +NF I YG +   L+ +  +S + AK  +D ++     V  + + 
Sbjct: 732  ----VTADLRSQAKAINFGIVYGMSGFRLSNELSISRKMAKAYIDNYFKRYAGVKKFIDT 787

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+R    V TL GR RR   I S   + RN  +RAAINTP+QGSAAD+   AM++++
Sbjct: 788  TIEETRKTGEVSTLFGRKRRLDDINSSNANVRNFAQRAAINTPIQGSAADLIKMAMIKMA 847

Query: 1056 KNARLKELGWKLLLQV 1071
               +   +  K+LL V
Sbjct: 848  DALKANNMASKMLLSV 863



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 56/247 (22%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D+L  F P  E+P IKKV  N  +D  VL  +G+ + G   DTM  + L + + R   G+
Sbjct: 383 DILRIFKPILENPDIKKVGQNIKYDYIVLSRFGITLQGIAFDTMIASYLLNPATR---GH 439

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
           SL+ +  +  +      +Y+    KG    GF      +D+                   
Sbjct: 440 SLDRIAMN--LFGYKTISYEDVTGKGKNQIGF------QDV------------------- 472

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
           P+ +         ++Y++ D+  T   Y+  KK+            +  +++ D  ++  
Sbjct: 473 PIAQ--------AVNYASEDADITFMAYQQFKKQ------------IQDQNLSDLMEKIE 512

Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
            P   +L  ME EG+ VD + L  + +    E ++        A +        N+ S  
Sbjct: 513 IPLITVLANMEMEGIKVDEDALQHLSQTFDLELKSLEKEIYALAGEE------FNINSSQ 566

Query: 663 QLRQLLF 669
           QL  +LF
Sbjct: 567 QLGVILF 573


>gi|395785269|ref|ZP_10465001.1| DNA polymerase I [Bartonella tamiae Th239]
 gi|423717832|ref|ZP_17692022.1| DNA polymerase I [Bartonella tamiae Th307]
 gi|395424816|gb|EJF90987.1| DNA polymerase I [Bartonella tamiae Th239]
 gi|395427232|gb|EJF93348.1| DNA polymerase I [Bartonella tamiae Th307]
          Length = 978

 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/294 (36%), Positives = 149/294 (50%), Gaps = 28/294 (9%)

Query: 821  NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH + ++  T TGRLS+  PNLQN P   K+  KIR AF+A P  SL+ ADY Q+EL
Sbjct: 698  TGRVHTNYSMAATSTGRLSSSEPNLQNIPIRTKEGRKIRAAFVAAPHYSLLSADYSQIEL 757

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAH+A+ K++  AF  G D H+ TA  M+                       VP+  +
Sbjct: 758  RVLAHIADIKALKKAFDEGLDIHAMTASEMFG----------------------VPI--E 793

Query: 940  AFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               SE RR+AK +NF I YG +  GLA    +S EEA   +  ++     +  + EA K 
Sbjct: 794  GMPSEIRRRAKAINFGIIYGISAFGLANQLGISREEAGSYIRTYFERFPGIKDYMEATKT 853

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +V T+ GR   +P I +     R   ERAAIN P+QGSAAD+   AM+ +    
Sbjct: 854  FAREHGYVETIFGRRAHYPEINASNPQIRAFNERAAINAPIQGSAADIIRRAMIHMEDAL 913

Query: 1059 RLKELGWKLLLQVL--FFFSFSFFSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
            ++ +L  K+LLQV     F  +   I   +     V+ NA  P    S  L  D
Sbjct: 914  KIADLSAKMLLQVHDELIFEVANDEIDKTIQLVKDVMENATMPALSLSVPLKVD 967



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 130/318 (40%), Gaps = 90/318 (28%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP------EADFGNGKSCIWVDLLDGGGR-- 422
           A DTE   +D  Q       E++ FS+   P        +   GK+    DLL G GR  
Sbjct: 392 AFDTETTSLDPMQ------AELVGFSLALRPGKAAYIPLNHVKGKN----DLL-GNGRLE 440

Query: 423 ------DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
                   L    P  E+ +I K+  N  +D  V++ YG+++  F  DTM ++ + D+  
Sbjct: 441 AQITVEKALKFIKPLLENTAILKIAQNMKYDWLVMKQYGIEIRSFD-DTMLLSYVLDAGT 499

Query: 477 RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAG 536
            T G   ++AL+  ++ +      Y++    G T       IS  ++             
Sbjct: 500 LTHG---MDALS--QRWLGHKPITYKELTGSGKT------AISFAEV------------- 535

Query: 537 KISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
                         + E    Y+A D+  TL+L++ LK +L+             K +  
Sbjct: 536 --------------DLEKATHYAAEDADVTLRLWQVLKPQLV------------AKGLSR 569

Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYLS----EIEKVARAEQEAAVNRFRKWASKHCPD 652
            Y+   +P  E+L +ME  G+LVDR+ LS    E+ + A AE++            +   
Sbjct: 570 VYERLERPLVEVLARMEQRGILVDRQVLSQLSGELAQSAAAEEDEI----------YTLA 619

Query: 653 AKYMNVGSDTQLRQLLFG 670
            +  N+GS  QL  +LFG
Sbjct: 620 GEKFNIGSPKQLGDILFG 637


>gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 915

 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/264 (37%), Positives = 146/264 (55%), Gaps = 27/264 (10%)

Query: 809  ILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN 867
            ILP   + VS ++GR+H S N   T TGRLS+  PNLQN P   +   +IRQAF+A PG+
Sbjct: 630  ILP---AMVSARDGRLHTSFNQARTATGRLSSSDPNLQNIPVRGQYGREIRQAFVAPPGH 686

Query: 868  SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
             L+ ADY Q++LR LAHL+   +++ AF A  D H+ TAM++Y   R+            
Sbjct: 687  FLLAADYSQIDLRALAHLSGDSALIAAFNAEEDIHTATAMSLYGLPRD------------ 734

Query: 928  GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
             E  P +          RR AK +NF + YG +  GL +  ++S EE+ + +  ++    
Sbjct: 735  -EITPEM----------RRFAKTVNFGVIYGMSGYGLEQATEMSREESTRFIQTYFERYP 783

Query: 988  EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
             V  +    K+++R   +V T+LGR R  P I +  R  R   ER AIN PVQG++AD+ 
Sbjct: 784  GVRAYLNLTKEQARSRGYVETILGRRRYIPDINAANRQVREAAERMAINMPVQGTSADII 843

Query: 1048 MCAMLEISKNARLKELGWKLLLQV 1071
              AMLE+ +    + L  +LLLQV
Sbjct: 844  KVAMLEVRREMDSQGLESRLLLQV 867


>gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
 gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
          Length = 1060

 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 158/301 (52%), Gaps = 36/301 (11%)

Query: 779  FATEQEAREACDAISALCE-VCSIDSLISNFILPLQGSNVSG------KNGRVHCSLNIN 831
            ++T+ E  E   A   + E V    SL+      LQG+ V G       +GRVH +    
Sbjct: 734  YSTDAEVLETLAARHPIAELVLEYRSLVK-----LQGTYVDGLAEHIGPDGRVHTTFQQT 788

Query: 832  TE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKS 890
               TGRLS+ +PNLQN P  ++    +R+AF+A PG+ L+ ADY Q+ELR+LAH +  + 
Sbjct: 789  VAATGRLSSTQPNLQNIPIRDEPGRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDEG 848

Query: 891  MLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKM 950
            +L+AF  G D H+RTA  ++      V   QV  E                  +RR AK 
Sbjct: 849  LLEAFARGQDVHARTASEIF-----GVPLEQVTPE------------------QRRVAKA 885

Query: 951  LNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLL 1010
            +NF +AYG+T  GLAR  ++   +A++ +D ++     V  + E   + +R    V TLL
Sbjct: 886  VNFGLAYGQTDYGLARALRIDRADARRFMDRYFERYPGVKRYMEETIRRARQHGEVTTLL 945

Query: 1011 GRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQ 1070
            GR R  P I+      R + ER AINTP+QG+AAD+   AM+ + +    + L  +++LQ
Sbjct: 946  GRRRPVPEIRHRVYHIRQNAERVAINTPIQGTAADIMKLAMIRVYRALAGEGLRARIVLQ 1005

Query: 1071 V 1071
            V
Sbjct: 1006 V 1006


>gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202]
 gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202]
          Length = 950

 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/291 (37%), Positives = 151/291 (51%), Gaps = 31/291 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   E+ A         L E   +  L S +   LPL    ++ K GRVH 
Sbjct: 626  KGAASTNEEVL--EELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLM---INAKTGRVHT 680

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 681  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQIELRIMAHL 740

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN K ML AF  G D H  TA  ++         G  L E  GE              +R
Sbjct: 741  ANDKGMLKAFAEGKDIHRSTASEIF---------GVPLDEVTGE--------------QR 777

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S  +AK+ ++ ++N    VL +    K ++    +
Sbjct: 778  RNAKAINFGLIYGMSEFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAAEKGY 837

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            V TLLGR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I +
Sbjct: 838  VETLLGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKIAMIGIDR 888


>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 925

 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/258 (38%), Positives = 140/258 (54%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + ++ + GRVH S  +  T TGRLS+  PNLQN P   ++  KIR AFIA PG+ L+ AD
Sbjct: 643  AQINPRTGRVHTSFALALTTTGRLSSSDPNLQNIPIRSEEGRKIRHAFIAEPGHVLLSAD 702

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR++AH+A  K ++ AF  G D H+ TA  ++             +   G D   
Sbjct: 703  YSQIELRLVAHVACIKGLIQAFHDGADIHAITAAQVFG------------VPVEGMD--- 747

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             P+L       RR+AK +NF I YG +  GLA+   +S  EAK  +D ++    E+  + 
Sbjct: 748  -PML-------RRRAKAINFGIIYGISAFGLAQQLGISNGEAKSYIDAYFGRYPEIRDFM 799

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K+E+R +  V T  GR    P IK    + R   ERAAIN P+QG AAD+   AM+ 
Sbjct: 800  ERTKEEARANGFVLTPFGRKVFTPGIKDKNGAMRAFAERAAINGPIQGGAADIIKRAMIR 859

Query: 1054 ISKNARLKELGWKLLLQV 1071
            +      + L  +LLLQV
Sbjct: 860  LPAALAAEGLKARLLLQV 877


>gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC 43183]
 gi|167698145|gb|EDS14724.1| DNA-directed DNA polymerase [Bacteroides stercoris ATCC 43183]
          Length = 952

 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 156/305 (51%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREACD----AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
            + T +E  E+       I  + E   +  L+S +I  L    ++ + GR+H S N   T 
Sbjct: 631  YVTSEEVLESLRNKHAIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTA 689

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 690  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMID 749

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      V+                  + D  A  RRKAK  NF
Sbjct: 750  AFLSGYDIHAATAAKIY-----KVD------------------INDVTADMRRKAKTANF 786

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R + +V T+  R 
Sbjct: 787  GIIYGISVFGLAERMNVPRQEAKELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHRK 846

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQV  
Sbjct: 847  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMSLIYQRLQSNNLKAKMILQVHD 906

Query: 1074 FFSFS 1078
              +FS
Sbjct: 907  ELNFS 911



 Score = 46.2 bits (108), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 137/362 (37%), Gaps = 84/362 (23%)

Query: 310 NDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLV 369
           N A  GTG  K +           + ++L  F  +  ++D     KK++  L  K    +
Sbjct: 335 NFADNGTGDAKNS-----------ILTRLEMFDVDYQLIDTEEKRKKIIQKLLTKE---I 380

Query: 370 HACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFA 429
            + DTE    +     P++  E++  S      +D  N    + V         ++NEF 
Sbjct: 381 LSIDTETTGTE-----PME-AELVGMSF-----SDAENQAYYVPVPANRDEALKIVNEFR 429

Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
           P +E+ +  KV  N  +D  VL+NYG++V G   DTM    +     R    Y       
Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQPELRHNMDY------- 482

Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
               ++E    YQ               I + ++ G +     G   K     P E++ R
Sbjct: 483 ----LAEIYLHYQ--------------TIHIDELIGAK-----GKNQKNMRDLPPEDVYR 519

Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
                   Y+  D+  TLKL   L+K+L E + +              + E   P   +L
Sbjct: 520 --------YACEDADVTLKLKNVLEKELKEHAAE------------HLFYEIEMPLVPVL 559

Query: 610 VKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK--HCPDAKYMNVGSDTQLRQL 667
           V +E+ G+ +D E L +         E    R ++   +       +  N+GS  Q+ ++
Sbjct: 560 VNIESNGVRIDTEALKQ-------SSEHFTLRLQEIEKEIYALAGGETFNIGSPKQVGEV 612

Query: 668 LF 669
           LF
Sbjct: 613 LF 614


>gi|423714748|ref|ZP_17688972.1| DNA polymerase I [Bartonella elizabethae F9251]
 gi|395430967|gb|EJF96995.1| DNA polymerase I [Bartonella elizabethae F9251]
          Length = 969

 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 160/314 (50%), Gaps = 40/314 (12%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 681  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTVEGRKIRTAFIA 732

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+ K++ +AF  G D H+ TA  M+           V 
Sbjct: 733  SKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASEMF----------GVA 782

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
            +E    D              RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 783  IEGMPSDT-------------RRRAKAINFGIIYGISAFGLANQLGISRQEAGRYIQLYF 829

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSA
Sbjct: 830  ERFPGIKNYMEKTKSFARENGYVETIFGRRIHYPEIKAENVKIRSLNERAAINAPIQGSA 889

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSF-----FSIIVIVSCQGIVLANAMH 1098
            AD+   AM+++    + + L  K+LLQV     F          I IV     V+ NA  
Sbjct: 890  ADIIRRAMIQMEDALKEESLSAKMLLQVHDELIFEVPEEESKKTIAIVKN---VMENATM 946

Query: 1099 PMFGKSSRLHYDVL 1112
            P+   S  L   V+
Sbjct: 947  PILSLSVPLEVKVM 960



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 129/320 (40%), Gaps = 93/320 (29%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA-------DFGNGKSCIWVDLLDGG--- 420
           A DTE   +D  Q       +++ FS+   P          F  G+     DLL GG   
Sbjct: 382 AFDTETTSLDPMQ------AKLVGFSLALQPGKAAYIPLEHFDEGEE----DLLRGGRIA 431

Query: 421 ----GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
                R  L    P  ED ++ K+  N  +D  V++ Y + +  F  DTM ++       
Sbjct: 432 SQIETRKALAFLKPILEDSAVLKIGQNIKYDWLVMKQYDIVIRSFD-DTMLLS------- 483

Query: 477 RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGS 534
                Y+L+A T    +          D+S     E ++G   I+ KD+    K      
Sbjct: 484 -----YALDAGTLTHNM---------DDLS-----ERWLGHKPIAYKDLTHNGK------ 518

Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
             KI++ A V+  Q         Y+A D+  TL+L++ LK +L+             + M
Sbjct: 519 --KITSFAQVDLRQA------TLYAAEDADITLRLWQVLKPQLV------------SRGM 558

Query: 595 FDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHC 650
              Y+   +P  E+L +ME  G+L+DR+ L     E+ + A   +E    +         
Sbjct: 559 TKIYERLDRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIYKQ--------- 609

Query: 651 PDAKYMNVGSDTQLRQLLFG 670
            D K+ N+ S  QL  +LFG
Sbjct: 610 ADEKF-NLASPKQLGDILFG 628


>gi|395778900|ref|ZP_10459411.1| DNA polymerase I [Bartonella elizabethae Re6043vi]
 gi|395417075|gb|EJF83427.1| DNA polymerase I [Bartonella elizabethae Re6043vi]
          Length = 969

 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 160/314 (50%), Gaps = 40/314 (12%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 681  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTVEGRKIRTAFIA 732

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+ K++ +AF  G D H+ TA  M+           V 
Sbjct: 733  SKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASEMF----------GVA 782

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
            +E    D              RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 783  IEGMPSDT-------------RRRAKAINFGIIYGISAFGLANQLGISRQEAGRYIQLYF 829

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSA
Sbjct: 830  ERFPGIKNYMEKTKSFARENGYVETIFGRRIHYPEIKAENVKIRSLNERAAINAPIQGSA 889

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSF-----FSIIVIVSCQGIVLANAMH 1098
            AD+   AM+++    + + L  K+LLQV     F          I IV     V+ NA  
Sbjct: 890  ADIIRRAMIQMEDALKEESLSAKMLLQVHDELIFEVPEEESKKTIAIVKN---VMENATM 946

Query: 1099 PMFGKSSRLHYDVL 1112
            P+   S  L   V+
Sbjct: 947  PILSLSVPLEVKVM 960



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 129/320 (40%), Gaps = 93/320 (29%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA-------DFGNGKSCIWVDLLDGG--- 420
           A DTE   +D  Q       +++ FS+   P          F  G+     DLL GG   
Sbjct: 382 AFDTETTSLDPMQ------AKLVGFSLALQPGKAAYIPLEHFDEGEE----DLLRGGRIA 431

Query: 421 ----GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
                R  L    P  ED ++ K+  N  +D  V++ Y + +  F  DTM ++       
Sbjct: 432 SQIETRKALAFLKPILEDSAVLKIGQNIKYDWLVMKQYDIVIRSFD-DTMLLS------- 483

Query: 477 RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGS 534
                Y+L+A T    +          D+S     E ++G   I+ KD+    K      
Sbjct: 484 -----YALDAGTLTHNM---------DDLS-----ERWLGHKPIAYKDLTHNGK------ 518

Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
             KI++ A V+  Q         Y+A D+  TL+L++ LK +L+             + M
Sbjct: 519 --KITSFAQVDLRQA------TLYAAEDADITLRLWQVLKPQLV------------SRGM 558

Query: 595 FDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHC 650
              Y+   +P  E+L +ME  G+L+DR+ L     E+ + A   +E    +         
Sbjct: 559 TKIYERLDRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIYKQ--------- 609

Query: 651 PDAKYMNVGSDTQLRQLLFG 670
            D K+ N+ S  QL  +LFG
Sbjct: 610 ADEKF-NLASPKQLGDILFG 628


>gi|332653862|ref|ZP_08419606.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
 gi|332516948|gb|EGJ46553.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
          Length = 900

 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/256 (35%), Positives = 141/256 (55%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V   +GR+H C  N  T TGRLS+  PNLQN P   +   ++R+ F+A PG  L+ ADY 
Sbjct: 620  VIAPDGRIHTCFQNTVTATGRLSSTEPNLQNIPIRTQLGAQLREMFVAAPGKVLVDADYS 679

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A  ++M++ F +G D H+ TA  ++      V   QV  +          
Sbjct: 680  QIELRLLAHMAGDQAMIEGFHSGADIHTITASQVF-----GVTPDQVTPQM--------- 725

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR AK +NF I YG +P  L++D  VSV++AK+ +D ++     V  + + 
Sbjct: 726  ---------RRSAKAVNFGIVYGISPFSLSQDIGVSVQQAKEYMDKYFAHYSGVRAYMDG 776

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              ++ + D +V TL GR R  P +KS   + R+  ER A+N P+QG+AAD+   AM+ + 
Sbjct: 777  VVEQGKQDGYVATLFGRRRWLPELKSSNFNTRSFGERVALNMPIQGTAADIIKLAMIRVR 836

Query: 1056 KNARLKELGWKLLLQV 1071
                 + L  +L+LQV
Sbjct: 837  DRLLREGLEGRLVLQV 852


>gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
 gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum]
 gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
          Length = 856

 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/256 (37%), Positives = 138/256 (53%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ + GRVH   N   T TGR+S+  PNLQN P   ++  KIR+AF++  G  L+  DY 
Sbjct: 576  VNPQTGRVHTKFNPTGTATGRISSSEPNLQNIPIKSEEGRKIRRAFVSEDGYFLVSLDYS 635

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+    ++ AF+ G D H RTA  ++      V+                 
Sbjct: 636  QIELRIMAHLSQEPKLISAFQKGEDIHRRTASEIFGVPEEEVDD---------------- 679

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            LL       R +AK +NF I YG +  GL+    ++ EEA+K +D ++     V  + + 
Sbjct: 680  LL-------RSRAKAVNFGIIYGISSFGLSETVSITPEEAEKFIDSYFKHYPRVKLFIDK 732

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
               E+R   +V TL GR R  P IKS+ +  RN  ER AIN P+QG+AAD+   AM+EI 
Sbjct: 733  TIHEAREKLYVKTLFGRKRYIPEIKSINKQVRNAYERIAINAPIQGTAADIIKLAMIEIY 792

Query: 1056 KNARLKELGWKLLLQV 1071
            K    K L  ++LLQ+
Sbjct: 793  KEIENKNLKSRILLQI 808


>gi|398797234|ref|ZP_10556557.1| DNA polymerase I [Pantoea sp. GM01]
 gi|398103354|gb|EJL93524.1| DNA polymerase I [Pantoea sp. GM01]
          Length = 930

 Score =  164 bits (415), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/259 (39%), Positives = 138/259 (53%), Gaps = 35/259 (13%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + V+G   RVH S +   T TGRLS+  PNLQN P   ++  +IRQAFIA PGN 
Sbjct: 645  LPLMINPVTG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAGPGNI 701

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++         G  L +  G
Sbjct: 702  IVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVF---------GVTLSKVSG 752

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 753  E--------------QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 798

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  + ++    +V TL GR    P I S    +R   ERAAIN P+QG+AAD+  
Sbjct: 799  VLRYMEETRSKAAEKGYVETLDGRRLWLPDITSSNAIRRKAAERAAINAPMQGTAADIIK 858

Query: 1049 CAMLEISKNARLKELGWKL 1067
             AM+ +         GW L
Sbjct: 859  RAMIAVD--------GWLL 869



 Score = 49.3 bits (116), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 153/392 (39%), Gaps = 83/392 (21%)

Query: 300 FKRSNQKNPKNDAAEGT--GQNKKA-SENENSEKLEIL-----RSKLASFYSNVMVVDNV 351
           F R   K    D  +GT   Q KK+ S+ + S+  E++      + + S    V ++D  
Sbjct: 279 FSRYEFKRWIADLQDGTWLQQGKKSNSQTQKSQLSEVVAPVTETTSVLSADGYVTILDEA 338

Query: 352 SAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSC 411
           + A+   W+   K   L  A D E   +D      V     I F++  G  A    G   
Sbjct: 339 TFAE---WLKKLKSAELF-AFDLETDSLDTLSANIVG----IAFAVAPGEAAYLPVGH-- 388

Query: 412 IWVDLLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
              D LD   +    D+L +  P  ED +  KV  N  +D  VL+NY ++++G   DTM 
Sbjct: 389 ---DYLDAPEQLDRNDVLKQLKPLLEDGNAAKVGQNLKYDRGVLKNYDIELNGIKFDTML 445

Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527
            +            Y L ++ G   +   D  A +    K  T E   GK   +  F + 
Sbjct: 446 ES------------YCLNSVGGKHDM---DSLAARWLNHKTVTFEEIAGKGKNQLTFNQI 490

Query: 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGK 587
            L++ G                        Y+A D+  TL+L+       L+M  KL+ +
Sbjct: 491 ALEQAG-----------------------HYAAEDADVTLQLH-------LKMWAKLEPE 520

Query: 588 PVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWAS 647
             P +     ++E   P  +++ ++E  G+L+D+  L      A+  QE           
Sbjct: 521 AGPKQ----VFEEIEMPLLKVISRIERNGVLIDQNIL------AKHSQELTTRVAELELK 570

Query: 648 KHCPDAKYMNVGSDTQLRQLLF---GGKPNSK 676
            H    +  N+ S  QL+ +LF   G KP  K
Sbjct: 571 AHELAGEPFNLSSPKQLQTILFEKQGIKPTKK 602


>gi|395780492|ref|ZP_10460954.1| DNA polymerase I [Bartonella washoensis 085-0475]
 gi|395418838|gb|EJF85155.1| DNA polymerase I [Bartonella washoensis 085-0475]
          Length = 968

 Score =  164 bits (415), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/268 (36%), Positives = 146/268 (54%), Gaps = 32/268 (11%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIRQAFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRQAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELR+LAH+A+  ++ +AF  G D H+ TA  M+             
Sbjct: 732  PEGHVLLSADYSQIELRVLAHIADIDALKEAFAQGQDIHAITASQMFG------------ 779

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                      +P+ K+  +  RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 780  ----------IPI-KEMPSDIRRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R   +V T+ GR   +P IK+  +  R   ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMETTKAFARQHGYVQTIFGRRIHYPEIKANNQQVRAFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AD+   AM+ +      ++L  K+LLQV
Sbjct: 889  ADIIRRAMIHMEDALEKEKLSAKMLLQV 916



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 125/315 (39%), Gaps = 84/315 (26%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSC-IWVDLLDGG------GR- 422
           A DTE   +D  Q       +++ FS+   P      GK+  I ++ ++GG      GR 
Sbjct: 382 AFDTETTSLDPLQ------AKLVGFSLALQP------GKAAYIPLEHIEGGDDLLGCGRI 429

Query: 423 -------DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSS 475
                    L    P  ++ ++ K+  N  +D  V++  G+ +  F  DTM ++   D+ 
Sbjct: 430 AEQIETKKALKLLKPILQNQAVLKIGQNMKYDWLVMKQQGIVMRSFD-DTMLLSYALDAG 488

Query: 476 RRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSA 535
                     ALT +   +SE    Y+               I+ KD+    K       
Sbjct: 489 ----------ALTHNMDALSERWLGYKP--------------IAYKDLTHNGK------- 517

Query: 536 GKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMF 595
            KIS+ A V+  Q         Y+A D+  TL+L++ LK +L+             K M 
Sbjct: 518 -KISSFAQVDLKQA------TFYAAEDADITLRLWQVLKPQLV------------AKGMT 558

Query: 596 DFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKY 655
             Y+   +P  E+L +ME  G+L+D++ L       R   E A   F      +    + 
Sbjct: 559 KIYERLDRPLIEVLARMEERGILIDQQIL------LRLSGELAQAAFILEEEIYQLAGEK 612

Query: 656 MNVGSDTQLRQLLFG 670
            N+ S  QL  +LFG
Sbjct: 613 FNIASPKQLGNILFG 627


>gi|374309980|ref|YP_005056410.1| DNA polymerase I [Granulicella mallensis MP5ACTX8]
 gi|358751990|gb|AEU35380.1| DNA polymerase I [Granulicella mallensis MP5ACTX8]
          Length = 1022

 Score =  164 bits (414), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/260 (36%), Positives = 138/260 (53%), Gaps = 24/260 (9%)

Query: 813  QGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV 871
            Q  +++  NGR+H + N + T TGRLS+  PNLQN P       +IR AFIA PGN L+ 
Sbjct: 738  QLPSLTDVNGRIHTTFNQVGTATGRLSSINPNLQNIPIRTAVGREIRAAFIAAPGNLLMS 797

Query: 872  ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDK 931
            ADY Q+ELR++AH +    +LDA++ G D H+ TA  ++             ++    DK
Sbjct: 798  ADYSQIELRLMAHFSQDPLLLDAYRTGKDIHTLTAAEVFE------------VDAATMDK 845

Query: 932  PPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLT 991
                         R +AK +NF I YG +P GLA    +  + AK  ++ +++  + V T
Sbjct: 846  -----------ETRARAKAVNFGIVYGISPFGLAAQLGIDQKVAKAYIERYFDRYKGVAT 894

Query: 992  WQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAM 1051
            + E   +  R D  V T  GR R  P I+S   +QR   ER A+NTP+QG+AAD+   AM
Sbjct: 895  FIEQTLETVRRDQAVKTAFGRVRPIPDIQSRNPNQRGFAERTAVNTPLQGTAADLIKIAM 954

Query: 1052 LEISKNARLKELGWKLLLQV 1071
            L I    R + L   + LQV
Sbjct: 955  LRIDAAIRTRNLRSLMTLQV 974


>gi|451947544|ref|YP_007468139.1| DNA polymerase I [Desulfocapsa sulfexigens DSM 10523]
 gi|451906892|gb|AGF78486.1| DNA polymerase I [Desulfocapsa sulfexigens DSM 10523]
          Length = 890

 Score =  164 bits (414), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/253 (38%), Positives = 141/253 (55%), Gaps = 26/253 (10%)

Query: 821  NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            +GRVH S N   T TGRLS+  PN+QN P   ++  +IR AF+   G   + ADY Q++L
Sbjct: 615  SGRVHTSFNQTVTATGRLSSSNPNMQNIPIRTEEGNRIRHAFVPAKGLVFLSADYSQIDL 674

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAH +   ++L AF+ G D H+RTA  ++     AV                 PLL  
Sbjct: 675  RVLAHYSQDAALLHAFRNGEDIHARTAAELF-----AVS----------------PLL-- 711

Query: 940  AFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               SE RR AK +NF I YG +  GL+    +S  EA + ++ +++    V T+ E   +
Sbjct: 712  -LTSEMRRVAKSINFGIVYGMSSFGLSNQLNISRREASRFIEKYFHLYGGVKTFMEKVVE 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++RID +V TLL R R  P I    ++QR   ER AINTP+QGSAAD+   AM+++    
Sbjct: 771  QARIDEYVTTLLNRRRMLPEINVKNKTQREFAERTAINTPIQGSAADIIKLAMVKVVPAL 830

Query: 1059 RLKELGWKLLLQV 1071
            + + L  +LLLQ+
Sbjct: 831  QRENLSARLLLQI 843


>gi|423317224|ref|ZP_17295129.1| DNA polymerase I [Bergeyella zoohelcum ATCC 43767]
 gi|405581696|gb|EKB55710.1| DNA polymerase I [Bergeyella zoohelcum ATCC 43767]
          Length = 938

 Score =  164 bits (414), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/283 (36%), Positives = 152/283 (53%), Gaps = 29/283 (10%)

Query: 792  ISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQP 848
            I  + E  +   L S ++  LP Q S +   +GRVH S +  T  TGRL++  PNLQN P
Sbjct: 634  IPLILEYRTYQKLKSTYVDALPTQISKI---DGRVHTSFSQTTAATGRLASLNPNLQNIP 690

Query: 849  ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
               +   +IR AF A  G  +I ADY Q+ELR++A ++  K+M++AF+ G D H+ TA  
Sbjct: 691  IRTERGQQIRGAFRAEKGKKIISADYSQIELRLIAEISGEKNMIEAFQKGEDIHASTAAK 750

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                    K P+    +   ++R +AK +NF I YG+    LA   
Sbjct: 751  LF--------------------KIPI---DEVNKTQRSQAKTVNFGIIYGQGAFALAEQT 787

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S  EAK+ +D ++     +  W  A+ K++R   +V TLLGR R    I+S     R+
Sbjct: 788  GLSRAEAKQMIDAYFQTYPTMKEWMTAQVKKARELGYVETLLGRKRHLKDIQSNNFVVRS 847

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            H ER A+N P+QGSAAD+   AM+EISK  + +    K+LLQV
Sbjct: 848  HAERNAVNAPIQGSAADIIKIAMIEISKKLKEENRATKMLLQV 890



 Score = 46.2 bits (108), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
           F PFFE  ++ K+ HN+ +D  VL+NYG+   G   DTM    L +   R
Sbjct: 415 FKPFFEAKTVMKIAHNFKYDYKVLKNYGVHFDGVLFDTMIAHYLLNPDGR 464


>gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795]
 gi|164603147|gb|EDQ96612.1| DNA-directed DNA polymerase [Clostridium bartlettii DSM 16795]
          Length = 882

 Score =  164 bits (414), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 160/304 (52%), Gaps = 28/304 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N ++    ++  E  D I+   ++  ++S     +L +    ++ K GR+H S 
Sbjct: 558  KTGYSTNAEVLEKLRDKHEIIDKITEYRQIVKLNSTYVEGLLKI----INPKTGRIHSSF 613

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PN+QN P   +    IR+ F+A     L+ ADY Q+ELR+LAH++ 
Sbjct: 614  NQTITTTGRISSTEPNMQNIPVKTEMGRDIRKVFVADENCKLVDADYSQVELRVLAHMSG 673

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M+DAFK G D HS+TA  ++      V+                  +KD  + +R +
Sbjct: 674  DENMIDAFKHGEDIHSKTASQIFD-----VD------------------IKDVTSKQRIE 710

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGKT  GL++D  + V  AK  +D ++N+  ++  + +   + +    +  
Sbjct: 711  AKAINFGIIYGKTDFGLSQDLNIPVATAKAYIDSYFNKYPKIKEFMDEAVESATETGYAT 770

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+L R R  P IK+     RN  +R A+N P+QGSAAD+   AM+ +    +   +  KL
Sbjct: 771  TILNRRRYIPEIKASNFIVRNQGKRFAMNAPIQGSAADIIKVAMVNVYNKLKENNMKSKL 830

Query: 1068 LLQV 1071
            +LQV
Sbjct: 831  ILQV 834


>gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
 gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
          Length = 968

 Score =  164 bits (414), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 146/268 (54%), Gaps = 32/268 (11%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+ K++ +AF  G D H+ TA  M+         G  +
Sbjct: 732  PKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASQMF---------GVAI 782

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
               H +               RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 783  EGMHSDI--------------RRRAKAINFGIIYGISAFGLANQLGISRQEAGRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMEKTKSFARENGYVETIFGRRIHYPEIKAKNVKIRSLNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AD+   AM+++    + + L  K+LLQV
Sbjct: 889  ADIIRRAMIQMEDALKEENLSAKMLLQV 916



 Score = 42.7 bits (99), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 125/316 (39%), Gaps = 88/316 (27%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP------EADFGNGKSCIWVDLLDGG---- 420
           A DTE   +D  Q       +++ FS+   P        +   GK     DLL GG    
Sbjct: 382 AFDTETTSLDPMQ------AKLVGFSLALQPGKAAYIPLEHFEGKE----DLLKGGRIAS 431

Query: 421 ---GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
               R  L    P  ED ++ K+  N  +D  V++ Y + +  F  DTM ++   D+   
Sbjct: 432 QIETRKALALLKPLLEDSAVLKIGQNIKYDWLVVKQYDIVIRSFD-DTMLLSYALDAG-- 488

Query: 478 TEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGK 537
                   ALT +   +SE    ++               I+ KD+    K        K
Sbjct: 489 --------ALTHNMDDLSERWLEHKP--------------IAYKDLTHNGK--------K 518

Query: 538 ISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDF 597
           I++ A V+  Q         Y+A D+  TL+L++ LK +L+             + M   
Sbjct: 519 ITSFAQVDLKQA------TLYAAEDADITLRLWQVLKPQLV------------ARGMTKI 560

Query: 598 YQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHCPDA 653
           Y+   +P  E+L +ME  G+LVDR+ L     E+ + A   +E    +          D 
Sbjct: 561 YERLDRPLVEVLARMEERGILVDRQILLRLSGELAQAALILEEEIYKQ---------ADE 611

Query: 654 KYMNVGSDTQLRQLLF 669
           K+ N+ S  QL  +LF
Sbjct: 612 KF-NLASPKQLGDILF 626


>gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup]
 gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup]
          Length = 969

 Score =  164 bits (414), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/258 (37%), Positives = 143/258 (55%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +  K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA  G+ L+ AD
Sbjct: 683  SYIFSKTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSAD 742

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELRILAH+A+ K++ +AF  G D H+ TA  M+         G  +   H +    
Sbjct: 743  YSQIELRILAHIADIKALKEAFAKGHDIHAITASQMF---------GVAIEGMHSDI--- 790

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+AK +NF I YG +  GLA    +S +EA + + L++     +  + 
Sbjct: 791  -----------RRRAKAINFGIIYGISAFGLANQLGISRQEAGRYIQLYFERFPGIKDYM 839

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K  +R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSAAD+   AM++
Sbjct: 840  EKTKIFARENGYVETIFGRRIHYPEIKAKNVKIRSLNERAAINAPIQGSAADIIRRAMIQ 899

Query: 1054 ISKNARLKELGWKLLLQV 1071
            +    + ++L  K+LLQV
Sbjct: 900  MENALKEEKLSAKMLLQV 917



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 155/386 (40%), Gaps = 105/386 (27%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA-------DFGNGKSCIWVDLLDGG--- 420
           A +TE   +D  Q       +++ FS+   PE         F  G+     DLL GG   
Sbjct: 382 AFNTETTSLDPMQ------AKLVGFSLALQPEKAAYIPLEHFDEGEE----DLLRGGHIA 431

Query: 421 ----GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSR 476
                R  L    P  ED S+ K+  N  +D  V++ Y + +S F  DTM ++  +D+  
Sbjct: 432 SQIETRKALALLKPILEDSSVLKIGQNIKYDWLVMKQYDIIISSFD-DTMLLSYAFDAG- 489

Query: 477 RTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAG 536
                     LT +   +SE    ++               IS KD+    K        
Sbjct: 490 ---------ILTHNMDDLSERWLKHKP--------------ISYKDLTHNGK-------- 518

Query: 537 KISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFD 596
           KI++ A V+  Q         Y+A  +  TL+L++ LK +L+             + M  
Sbjct: 519 KITSFAQVDLKQA------TLYAAERADITLRLWQVLKPQLV------------ARGMTK 560

Query: 597 FYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHCPD 652
            Y+   +P  E+L +ME  G+L+DR+ L     E+ + A   +E    +          D
Sbjct: 561 IYERLDRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIYKQ---------AD 611

Query: 653 AKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK- 706
            K+ N+ S  QL  +LFG     G   +K    S   + +      E + AEG   P K 
Sbjct: 612 EKF-NLASPKQLGDILFGKMGLSGGAKTKGGQWSTSAQTL------EELAAEGHVLPRKI 664

Query: 707 --FRNIT-LRSIGVD-LPTEMYTATG 728
             +R +  L+S   D LP+ +++ TG
Sbjct: 665 IEWRQLAKLKSTYTDALPSYIFSKTG 690


>gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Magnetospirillum magnetotacticum MS-1]
          Length = 926

 Score =  164 bits (414), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/259 (38%), Positives = 137/259 (52%), Gaps = 26/259 (10%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + ++   GRVH S  +  T TGRLS+  PNLQN P   ++  KIR AF+A PG  LI AD
Sbjct: 644  AQINPATGRVHTSYALAATTTGRLSSSDPNLQNIPIRTEEGRKIRHAFVAEPGKRLISAD 703

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR++AH+A  + + DAF  G D H+ TA  ++                       
Sbjct: 704  YSQIELRLVAHVAEIEGLRDAFADGADIHAITASQVFG---------------------- 741

Query: 934  VPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
            VPL  D   S  RR+AK +NF I YG +P GLA    +   EAK  ++ ++    E+ T+
Sbjct: 742  VPL--DGMDSALRRRAKAINFGIIYGISPFGLAAQLGIPQGEAKAYIEAYFARYPEIRTF 799

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             E  K+E+R    V TL GR    P IK    + R   ERAAIN P+QG AAD+   AM+
Sbjct: 800  MERTKEEAREKGFVTTLFGRKVFTPGIKDKNGAMRAFAERAAINGPIQGGAADIIKRAMI 859

Query: 1053 EISKNARLKELGWKLLLQV 1071
             +      + L  +LLLQV
Sbjct: 860  RLPAALVAEGLKARLLLQV 878


>gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583]
 gi|421760161|ref|ZP_16196982.1| DNA polymerase I [Bartonella bacilliformis INS]
 gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583]
 gi|411176633|gb|EKS46650.1| DNA polymerase I [Bartonella bacilliformis INS]
          Length = 968

 Score =  164 bits (414), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 100/258 (38%), Positives = 140/258 (54%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +S K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA  G  L+ AD
Sbjct: 682  SYISPKTGRVHTNYSLATTSTGRLSSSEPNLQNIPIRTIEGRKIRTAFIASEGCLLLSAD 741

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+  ++ +AF  G D H+ TA  M+           V +E    D   
Sbjct: 742  YSQIELRLLAHIADITALKEAFAQGQDIHAMTASQMF----------GVAIERMSSDV-- 789

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+AK +NF I YG +  GLA    +S EEA   + +++     + ++ 
Sbjct: 790  -----------RRRAKAINFGIIYGISAFGLANQLGISREEASHYIRVYFERFPGIQSYM 838

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            EA K  +R   +V T+ GR   +P IK+  R  R   ERAAIN P+QGSAAD+   AM++
Sbjct: 839  EATKIFARQHGYVETIFGRRIHYPEIKARDRQVRAFNERAAINAPIQGSAADIIRRAMIQ 898

Query: 1054 ISKNARLKELGWKLLLQV 1071
            +      + L  K+LLQV
Sbjct: 899  MEGALEKEGLSAKMLLQV 916


>gi|451940050|ref|YP_007460688.1| DNA polymerase I [Bartonella australis Aust/NH1]
 gi|451899437|gb|AGF73900.1| DNA polymerase I [Bartonella australis Aust/NH1]
          Length = 969

 Score =  164 bits (414), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/268 (37%), Positives = 144/268 (53%), Gaps = 32/268 (11%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        + GRVH S ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 681  LPHYILP--------RTGRVHTSYSLATTSTGRLSSSEPNLQNIPVRTAEGRKIRAAFIA 732

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+SL+ ADY Q+ELR+LAH+A+  ++ +AF  G D H+ TA  M+           V 
Sbjct: 733  PRGHSLLSADYSQIELRVLAHIADITALKEAFAQGKDIHTITASQMF----------GVA 782

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
            +E    D              RR+AK +NF I YG +  GLA    +S +EA   + L++
Sbjct: 783  IEGMPSDI-------------RRRAKAINFGIIYGISAFGLANQLGISRKEAGHYIQLYF 829

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R   +V T+ GR   +P IK+     R+  ERAAIN P+QGSA
Sbjct: 830  ERFPGIKEYMEEIKIFARQHGYVETIFGRRIHYPEIKAANSQVRSFNERAAINAPIQGSA 889

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AD+   AM++I      ++L  K+LLQV
Sbjct: 890  ADIIRRAMIQIETALEKEKLSAKMLLQV 917



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 128/310 (41%), Gaps = 74/310 (23%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP-EADFGNGKSCIWVDLLDGGGR------- 422
           A DTE   +D  Q       E++ FS+   P +A +   +     D L G GR       
Sbjct: 383 AFDTETTSLDPMQ------AELVGFSLALRPNKAAYIPLEHVEGRDDLLGDGRIAAQIET 436

Query: 423 -DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
              L    P  E+ ++ K+  N  +D  +++ +G+ +  F  DTM ++ + D+   T G 
Sbjct: 437 QKALALLKPILENQAVLKIGQNIKYDWLMMKQHGIVMRPFD-DTMLLSYVLDAGTLTHG- 494

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
                      V+S+           G+T       IS KD+    K        KI++ 
Sbjct: 495 ---------MDVLSQH--------WLGHT------PISYKDLTHNGK--------KITSF 523

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
           A V+  Q         Y+A D+  TL+L++ LK +L+             + +   Y+  
Sbjct: 524 AQVDLKQAT------LYAAEDADVTLRLWEVLKPQLV------------AQGLTKIYERL 565

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIE-KVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
            +P  E+L KME  G+LVDR+ LS +  ++ARA        ++    K        NV S
Sbjct: 566 DRPLIEVLAKMEERGVLVDRQILSRLSGELARAASVLEEEIYQLVGEK-------FNVAS 618

Query: 661 DTQLRQLLFG 670
             QL  ++FG
Sbjct: 619 PKQLGDIIFG 628


>gi|395792664|ref|ZP_10472088.1| DNA polymerase I [Bartonella vinsonii subsp. arupensis Pm136co]
 gi|395432221|gb|EJF98210.1| DNA polymerase I [Bartonella vinsonii subsp. arupensis Pm136co]
          Length = 968

 Score =  164 bits (414), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 145/268 (54%), Gaps = 32/268 (11%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRAAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+AN  ++ +AF  G D H+ TA  M+             
Sbjct: 732  PKGHLLLSADYSQIELRILAHIANITALKEAFAQGQDIHAITASQMFG------------ 779

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                      VP+ +   +  RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 780  ----------VPI-EGMHSDVRRRAKAINFGIIYGISAFGLANQLGLSRQEASRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R +  V T+ GR   +P IK+ +   R   ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMETTKTFARENGFVETIFGRRIHYPEIKAASLRVRAFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AD+   AM+++      ++L  K+LLQV
Sbjct: 889  ADIIRRAMIQMEAALEKEKLSAKMLLQV 916


>gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
            17393]
 gi|189437164|gb|EDV06149.1| DNA-directed DNA polymerase [Bacteroides intestinalis DSM 17393]
          Length = 941

 Score =  164 bits (414), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 158/307 (51%), Gaps = 33/307 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
            + T +E  E+     + I  + E   +  L+  ++  LPL    ++ + GR+H S N   
Sbjct: 620  YVTSEEVLESLRNKHEVIGKILEYRGLKKLLGTYVDALPLL---INPRTGRIHTSFNQAV 676

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  ++D  +IR+AFI         ADY Q+ELRI+AHL+  K+M
Sbjct: 677  TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDDCEFFSADYSQIELRIMAHLSEDKNM 736

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y      ++                  +KD     RRKAK  
Sbjct: 737  IDAFLSGYDIHAATAAKIY-----KID------------------IKDVTPDMRRKAKTA 773

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    +V  + +   + +R   +V T+  
Sbjct: 774  NFGIIYGISIFGLAERMNVDRKEAKELIDGYFETYPQVREYMDKSIQVAREQGYVETIFH 833

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S   + R + ER AIN P+QGSAAD+   AM  I +  +  +L  K++LQV
Sbjct: 834  RKRFLPDINSRNATVRGYAERNAINAPIQGSAADIIKVAMARIYERFQSYKLKAKMILQV 893

Query: 1072 LFFFSFS 1078
                +FS
Sbjct: 894  HDELNFS 900



 Score = 42.7 bits (99), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 50/203 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++NEF P +E+ +  KV  N  +D  VL+NYG++V G   DTM    +     R    Y 
Sbjct: 414 IVNEFRPLYENENSMKVGQNIKYDILVLQNYGVEVKGELFDTMLAHYVLQPELRHNMDY- 472

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
                     ++E    YQ               I + ++ G +     G   K     P
Sbjct: 473 ----------LAEIYLHYQ--------------TIHIDELIGPK-----GKNQKNMRDLP 503

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            EE+ +        Y+  D+  TLKL     K +LE   K  G       +   + E   
Sbjct: 504 PEEVYK--------YACEDADITLKL-----KNVLEEELKKQG-------VEHLFYEIEM 543

Query: 604 PFGEILVKMETEGMLVDREYLSE 626
           P   +L  ME+ G+ +D E L +
Sbjct: 544 PLVRVLANMESNGVRIDTETLKQ 566


>gi|423713326|ref|ZP_17687586.1| DNA polymerase I [Bartonella vinsonii subsp. arupensis OK-94-513]
 gi|395423367|gb|EJF89562.1| DNA polymerase I [Bartonella vinsonii subsp. arupensis OK-94-513]
          Length = 968

 Score =  164 bits (414), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 145/268 (54%), Gaps = 32/268 (11%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRAAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+AN  ++ +AF  G D H+ TA  M+             
Sbjct: 732  PKGHLLLSADYSQIELRILAHIANITALKEAFAQGQDIHAITASQMFG------------ 779

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                      VP+ +   +  RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 780  ----------VPI-EGMHSDVRRRAKAINFGIIYGISAFGLANQLGLSRQEASRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R +  V T+ GR   +P IK+ +   R   ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMETTKTFARENGFVETIFGRRIHYPEIKAASLRVRAFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AD+   AM+++      ++L  K+LLQV
Sbjct: 889  ADIIRRAMIQMEAALEKEKLSAKMLLQV 916



 Score = 47.8 bits (112), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 51/195 (26%)

Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
           P  E+ ++ K+  N  +D  V++ +G+ +S F  DTM ++   D+   T           
Sbjct: 444 PILENQAVLKIGQNIKYDWLVMKQHGIVISSFD-DTMLLSYALDAGTLTHN--------- 493

Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
               M +  + + +  S    D  + GK                   KI++ A V+  Q 
Sbjct: 494 ----MDDLSERWLRHKSIAYKDLTYNGK-------------------KITSFAQVDLKQA 530

Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
                   Y+A D+  TL L+K LK +L+             + M   Y+   +P  E+L
Sbjct: 531 ------TLYAAEDADVTLHLWKVLKPQLV------------ARGMTKIYERLDRPLIEVL 572

Query: 610 VKMETEGMLVDREYL 624
            +ME  G+L+DR+ L
Sbjct: 573 ARMEERGILIDRQVL 587


>gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12]
 gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12]
          Length = 917

 Score =  163 bits (413), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/247 (39%), Positives = 136/247 (55%), Gaps = 27/247 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K+GRVH S +  N  TGRLS+  PNLQN P   ++  +IR AFIA  G  
Sbjct: 632  LPLM---VNAKSGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGKK 688

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  + +L AF AG D H  TA  ++      V+ G+V  E   
Sbjct: 689  VLAADYSQIELRIMAHLSQDEGLLTAFAAGKDIHRATAAEVFD-----VDFGEVTTE--- 740

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                           +RR+AK +NF + YG +  GLA+   +   EA+K +D ++     
Sbjct: 741  ---------------QRRRAKAVNFGLIYGMSAFGLAKQLDIPRPEAQKYIDTYFKRYPG 785

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  + E+    +V TL GR    PAIK     +R   ERAAIN P+QG+AAD+  
Sbjct: 786  VLKYMEETRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIK 845

Query: 1049 CAMLEIS 1055
             AM+ I+
Sbjct: 846  KAMINIA 852



 Score = 43.5 bits (101), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 158/405 (39%), Gaps = 110/405 (27%)

Query: 278 RNSEIECFEDGSSYTPPPKLVSFKR--SNQKNPKNDAAEGTGQNKKASENENSEKLEILR 335
           R+  IECF +          + FKR  ++  + K D    +G+++K ++ E      +++
Sbjct: 272 RDELIECFGE----------MEFKRWLADVLDNKTD----SGKSEKNTDEE------VIK 311

Query: 336 SKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICF 395
             + + Y+ +   + +      +W+       L+ A DTE   ++      V     I F
Sbjct: 312 QDIQTEYTTIYTHEELD-----LWIDKLANADLI-AIDTETTSLNYMDAKLVG----ISF 361

Query: 396 SIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
           +I +G  A    G      D LD   +    + L +  P  E+P +KKV  N  +D  + 
Sbjct: 362 AIEAGKAAYLPLGH-----DYLDAPEQLDQAEALAKLKPLLENPELKKVGQNLKYDISIF 416

Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
            N G+K+ G   DTM  + +++S                               +K N D
Sbjct: 417 ANVGIKLQGIAFDTMLESYVFNSV-----------------------------ATKHNMD 447

Query: 512 E---GFMG--KISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINT 566
           +    ++G   IS ++I G+   +   +   + T AP              Y+A D+  T
Sbjct: 448 DLALKYLGHKNISFEEIAGKGVKQLTFNQIDLETAAP--------------YAAEDADIT 493

Query: 567 LKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLS 625
           L+L++ L        W +L+ +P     +   + +   P  ++L  +E  G+L+D   L 
Sbjct: 494 LRLHQHL--------WPRLEKEP----ELASVFTDIELPLIQVLSDIERGGVLIDSMMLG 541

Query: 626 EIE-KVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
           +   ++AR   E     F     K        N+ S  QL+ L F
Sbjct: 542 QQSGELARTIDELEQKAFEIAGEK-------FNLSSPKQLQVLFF 579


>gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
 gi|217986035|gb|EEC52374.1| DNA-directed DNA polymerase [Bacteroides eggerthii DSM 20697]
          Length = 952

 Score =  163 bits (413), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 157/305 (51%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREACD----AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
            + T +E  E+       I  + E   +  L+S +I  L    ++ + GR+H S N   T 
Sbjct: 631  YVTSEEVLESLRNKHAIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTA 689

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  ++M+D
Sbjct: 690  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMID 749

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      V+  +V  +                   RRKAK  NF
Sbjct: 750  AFLSGYDIHAATAAKIY-----KVDISEVTTDM------------------RRKAKTANF 786

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    VS +EAK+ +D ++    ++  + +   + +R + +V T+  R 
Sbjct: 787  GIIYGISVFGLAERMNVSRQEAKELIDGYFETYPQIKEYMDKSIQVARENGYVETIFHRK 846

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQV  
Sbjct: 847  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHD 906

Query: 1074 FFSFS 1078
              +FS
Sbjct: 907  ELNFS 911



 Score = 46.6 bits (109), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++NEF P +E+ +  KV  N  +D  VL+NYG++V G   DTM    +     R    Y 
Sbjct: 424 IVNEFRPLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQPELRHNMDYL 483

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
            E     R +  ++        S+G   +      SM+D+                   P
Sbjct: 484 AEIYLRYRTIHIDELIG-----SRGKNQK------SMRDL-------------------P 513

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            E++ R        Y+  D+  TLKL   L+K+L + S +              + E   
Sbjct: 514 PEDVYR--------YACEDADVTLKLKNVLEKELKKQSAE------------HLFYEIEM 553

Query: 604 PFGEILVKMETEGMLVDREYLSE 626
           P   +LV +E+ G+ +D E L +
Sbjct: 554 PLVPVLVNIESNGVRIDTEALKQ 576


>gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
 gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
          Length = 952

 Score =  163 bits (413), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 157/305 (51%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREACD----AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
            + T +E  E+       I  + E   +  L+S +I  L    ++ + GR+H S N   T 
Sbjct: 631  YVTSEEVLESLRNKHAIIGKILEYRGLKKLLSTYIDALP-QLINPRTGRIHTSFNQAVTA 689

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  ++D  +IR+AFI   G     ADY Q+ELRI+AHL+  ++M+D
Sbjct: 690  TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMID 749

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +G D H+ TA  +Y      V+  +V  +                   RRKAK  NF
Sbjct: 750  AFLSGYDIHAATAAKIY-----KVDISEVTTDM------------------RRKAKTANF 786

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    VS +EAK+ +D ++    ++  + +   + +R + +V T+  R 
Sbjct: 787  GIIYGISVFGLAERMNVSRQEAKELIDGYFETYPQIKEYMDKSIQVARENGYVETIFHRK 846

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  +   L  K++LQV  
Sbjct: 847  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHD 906

Query: 1074 FFSFS 1078
              +FS
Sbjct: 907  ELNFS 911



 Score = 46.6 bits (109), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++NEF P +E+ +  KV  N  +D  VL+NYG++V G   DTM    +     R    Y 
Sbjct: 424 IVNEFRPLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQPELRHNMDYL 483

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
            E     R +  ++        S+G   +      SM+D+                   P
Sbjct: 484 AEIYLRYRTIHIDELIG-----SRGKNQK------SMRDL-------------------P 513

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            E++ R        Y+  D+  TLKL   L+K+L + S +              + E   
Sbjct: 514 PEDVYR--------YACEDADVTLKLKNVLEKELKKQSAE------------HLFYEIEM 553

Query: 604 PFGEILVKMETEGMLVDREYLSE 626
           P   +LV +E+ G+ +D E L +
Sbjct: 554 PLVPVLVNIESNGVRIDTEALKQ 576


>gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
 gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
          Length = 883

 Score =  163 bits (413), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/258 (39%), Positives = 148/258 (57%), Gaps = 27/258 (10%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVP-GNSLIVADY 874
            V  + GR+H + +   T TGRLS+  PNLQN P   +   KIR+ FI    GN ++ ADY
Sbjct: 600  VDPQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLETGRKIRKVFIPRQRGNLILTADY 659

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  +S LDAF+ G D H+RTA  ++                       V
Sbjct: 660  SQIELRVLAHMSQDESFLDAFRQGQDIHTRTASEVFG----------------------V 697

Query: 935  PLLKDAFASERR-KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
            P+  D   SE R +AK +NF I YG +  GLARD KVS +EA+  +D ++     V  + 
Sbjct: 698  PM--DQVTSEMRSRAKAVNFGIVYGISDFGLARDLKVSRKEAQGYIDHYFARCPGVRQYI 755

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            +   KE++   +V+TLL R R  P + S   + RN  ERAA+NTP+QG+AAD+   AM++
Sbjct: 756  DRVIKEAKETGYVNTLLNRRRYLPELFSKNFNIRNFGERAAMNTPIQGTAADIIKLAMVK 815

Query: 1054 ISKNARLKELGWKLLLQV 1071
            IS+  + + L  +++LQV
Sbjct: 816  ISQQLKEQNLSSQMVLQV 833


>gi|395789048|ref|ZP_10468578.1| DNA polymerase I [Bartonella taylorii 8TBB]
 gi|395431182|gb|EJF97209.1| DNA polymerase I [Bartonella taylorii 8TBB]
          Length = 968

 Score =  163 bits (413), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/311 (35%), Positives = 159/311 (51%), Gaps = 34/311 (10%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLATTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+  ++  AF  G D H+ TA  M+          +V 
Sbjct: 732  PKGHVLLSADYSQIELRILAHIADITALKKAFSQGQDIHAITASQMF----------EVP 781

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
            +E    D              RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 782  IEGMHSDI-------------RRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K   R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMETTKTFVRQNGYVETIFGRRIHYPEIKAANLQVRSFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQVL--FFFSFSFFSIIVIVSCQGIVLANAMHPMF 1101
            AD+   AM+++ +    ++L  K+LLQV     F          ++    V+ NA  P+F
Sbjct: 889  ADIIRRAMIQMGEALEKEKLSAKMLLQVHDELIFEVPEDESEKTMAVVKKVMENATMPVF 948

Query: 1102 GKSSRLHYDVL 1112
              S  L   V+
Sbjct: 949  SLSVPLEVKVM 959


>gi|451941315|ref|YP_007461952.1| DNA polymerase I [Bartonella vinsonii subsp. berkhoffii str. Winnie]
 gi|451900702|gb|AGF75164.1| DNA polymerase I [Bartonella vinsonii subsp. berkhoffii str. Winnie]
          Length = 968

 Score =  163 bits (412), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 144/268 (53%), Gaps = 32/268 (11%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GR+H + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 680  LPSYILP--------KTGRIHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRAAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+AN  ++ +AF  G D H+ TA  M+         G  +
Sbjct: 732  PKGHLLLSADYSQIELRILAHIANITALKEAFAQGQDIHAITASQMF---------GVPI 782

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
             E H +               RR+AK +NF I YG +  GLA     S +EA + + L++
Sbjct: 783  EEMHSD--------------VRRRAKAINFGIIYGISAFGLANQLGFSRQEASRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R +  V T+ GR   +P IK+     R   ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMETTKTFARQNGFVETIFGRRIHYPEIKASNPQVRAFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AD+   AM+++    + ++L  K+LLQV
Sbjct: 889  ADIIRRAMIQMEDALKKEKLLAKMLLQV 916



 Score = 49.3 bits (116), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 57/240 (23%)

Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
           P  E+ +I K+  N  +D  V++ +G+ +S F  DTM  +   D+   T           
Sbjct: 444 PILENQAILKIGQNIKYDWLVMKQHGIVISSFD-DTMLFSYALDAGTLTH---------- 492

Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
                              N D+  +  +  K I   + L  +G   KI++ A V+ LQ+
Sbjct: 493 -------------------NMDDLSVRWLGHKPI-AYKDLTHNGK--KITSFAQVD-LQQ 529

Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
                   Y+A D+  TL+L++ LK +L+             + M   Y+ + +P  E+L
Sbjct: 530 ATL-----YAAEDADVTLRLWQVLKPQLV------------AQGMTKIYERFDRPLIEVL 572

Query: 610 VKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
            +ME  G+L+DR+ L       R  +E A   F      +    +  N+ S  QL  +LF
Sbjct: 573 ARMEERGILIDRQIL------LRLSEELAQAAFILEEEIYQLAGEKFNLASPKQLGDILF 626


>gi|389856247|ref|YP_006358490.1| DNA polymerase I [Streptococcus suis ST1]
 gi|353739965|gb|AER20972.1| DNA polymerase I [Streptococcus suis ST1]
          Length = 878

 Score =  163 bits (412), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 158/284 (55%), Gaps = 28/284 (9%)

Query: 791  AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
             +S + E   I  L S +++ LQ + +  ++G++H   +   T+TGRLS+  PNLQN P 
Sbjct: 572  VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629

Query: 850  -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
             LE+ R  IR+AF+    NS+++A DY Q+ELR+LAH++  K +++AF+ G D H+ TAM
Sbjct: 630  RLEQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++      +E          ED  P         ++RR AK +NF + YG +  GL+ +
Sbjct: 689  RVF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLSNN 726

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAK  +D ++     +  + E   +E+R   +V T+  R R  P I S   + R
Sbjct: 727  LGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVR 786

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            N  ER AIN+P+QGSAAD+   AM+ + K      L  ++LLQV
Sbjct: 787  NFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQV 830


>gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
 gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
          Length = 874

 Score =  163 bits (412), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 95/257 (36%), Positives = 154/257 (59%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADY 874
            +  K+G++H   N   T+TGRLS+  PNLQN P   ++  KIR+AF+    N++I  ADY
Sbjct: 593  IHQKSGKIHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRRAFVPERENAVIFAADY 652

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++N +++ +AFK   D H++TAM+++ H+ +A E   ++           
Sbjct: 653  SQIELRVLAHISNDENLTNAFKENMDVHTKTAMDVF-HV-SADEVTSLM----------- 699

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                      RR AK +NF I YG +  GL+++  ++ +EAKK +D +++    V  + E
Sbjct: 700  ----------RRTAKAVNFGIVYGISDYGLSQNLGITRKEAKKFIDRYFDSYPGVKEYME 749

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            +  +E+R++ +V T+L R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 750  SIVEEARVNGYVTTMLHRRRYLPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMVKM 809

Query: 1055 SKNARLKELGWKLLLQV 1071
             +  + K L   LLLQV
Sbjct: 810  EEEMKEKGLKSTLLLQV 826


>gi|386390037|ref|ZP_10074834.1| DNA-directed DNA polymerase [Haemophilus paraphrohaemolyticus HK411]
 gi|385694079|gb|EIG24705.1| DNA-directed DNA polymerase [Haemophilus paraphrohaemolyticus HK411]
          Length = 950

 Score =  163 bits (412), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 149/291 (51%), Gaps = 31/291 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   E+ A+E       L E   +  L S +   LP     ++ K GRVH 
Sbjct: 626  KGAPSTNEEVL--EELAQEGHIVPKLLIEHRGLSKLKSTYTDKLP---QMINPKTGRVHT 680

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 681  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYKVVAADYSQIELRIMAHL 740

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN   M  AF  G D H  TA  ++                         LL++    +R
Sbjct: 741  ANDAGMQKAFAEGKDIHRSTAAEIFG-----------------------VLLEEVTNEQR 777

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S +EA+  +D ++N    VL +    K ++    +
Sbjct: 778  RNAKAINFGLIYGMSEFGLSNQLGISRQEARSYMDAYFNRYPNVLQFMTDIKAKAAEQGY 837

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            V TLLGR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I K
Sbjct: 838  VETLLGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDK 888



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 154/403 (38%), Gaps = 97/403 (24%)

Query: 303 SNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLT 362
           + ++ P N AA      +   + E+  K+EI RSK    Y  V      + A+   W+  
Sbjct: 302 TKERMPNNYAA-----TQAVEKTESFAKVEIDRSK----YETVR-----TEAQLEKWIEK 347

Query: 363 NKYKHLVHACDTEVAKIDVKQETPVD------HGEVICFSIYSGPEADFGNGKSCIWVDL 416
            + + LV A DTE   +DV     V        GE     +    E     G+  ++ + 
Sbjct: 348 IQAEKLV-AVDTETNALDVMSAELVGISFGLASGEACYIPLTHKEEVSEQAGQGDLFAEN 406

Query: 417 LDGGGRDL----------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
               G +L          L    P  ED  IKK+  N  +D  V  N+G++V G   DTM
Sbjct: 407 TANVGYELVKNQINLTACLAALKPILEDKQIKKIGQNIKYDLTVFANHGIEVQGVEFDTM 466

Query: 467 HMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGR 526
               L   ++ + G ++++ L    + +     A+++   KG     F  KI +      
Sbjct: 467 ----LESYTQNSTGRHNMDDLA--ERYLGHKTIAFEEIAGKGKNQLTF-DKIVL------ 513

Query: 527 RKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDG 586
                                     ++   Y+A D+  T+KL+++L  +L         
Sbjct: 514 --------------------------DVASEYAAEDADVTMKLHQTLFPEL--------- 538

Query: 587 KPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRF 642
           +  P  ++   + E   P   +L  +E  G+L+D + L     EIE+   AE EA V   
Sbjct: 539 EKTP--TLLKLFNEIEMPLVRVLSHIERNGVLIDPQKLLAQSQEIEQ-RLAEVEAEV--- 592

Query: 643 RKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSKDDSESLP 683
                 H    +  N+ S  QL+++LF   G P  K   +  P
Sbjct: 593 ------HQVAGQEFNLASTKQLQEILFEKLGLPVKKKTPKGAP 629


>gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae
            bacterium]
          Length = 894

 Score =  162 bits (411), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/257 (35%), Positives = 142/257 (55%), Gaps = 24/257 (9%)

Query: 816  NVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
            ++    GRVH S N     TGRLS+  PNLQN P   +   +IR+AF+A   N L+ ADY
Sbjct: 613  DIFNNTGRVHTSFNQTVAATGRLSSSNPNLQNIPIRTEMGREIRKAFVAEGNNHLLSADY 672

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAHL+  ++++DAF+ G D H+RTA  ++      ++                
Sbjct: 673  SQVELRVLAHLSEDEALVDAFQMGEDIHTRTACEIFGTTPERLD---------------- 716

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                   A  RR AK +NF I YG +  GL++  K+  ++AKK +D ++   ++V  +  
Sbjct: 717  -------AEARRMAKAVNFGIVYGLSAFGLSKQLKIYPKDAKKFIDQYFALYKKVKVYMV 769

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
                +++   +  TL+ R R  P +KS  R  R   ER AIN+PVQGSAAD+   AM+ +
Sbjct: 770  ETVAQAKEVGYTLTLMNRRRYLPDLKSQNRQVRESAERIAINSPVQGSAADLIKLAMIRL 829

Query: 1055 SKNARLKELGWKLLLQV 1071
            ++  R K+L  +++LQV
Sbjct: 830  AEQIRTKKLKSRMILQV 846


>gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305]
 gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305]
          Length = 950

 Score =  162 bits (411), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 108/291 (37%), Positives = 151/291 (51%), Gaps = 31/291 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   E+ A         L E   +  L S +   LPL    ++ K GRVH 
Sbjct: 626  KGAASTNEEVL--EELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLM---INAKTGRVHT 680

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 681  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQIELRIMAHL 740

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN + ML AF  G D H  TA  ++         G  L E  GE              +R
Sbjct: 741  ANDEGMLKAFAEGKDIHRSTASEIF---------GVPLDEVTGE--------------QR 777

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S  +AK+ ++ ++N    VL +    K ++    +
Sbjct: 778  RNAKAINFGLIYGMSEFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAAEKGY 837

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            V TLLGR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I +
Sbjct: 838  VETLLGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKIAMIGIDR 888


>gi|386580284|ref|YP_006076689.1| DNA polymerase I [Streptococcus suis JS14]
 gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14]
          Length = 878

 Score =  162 bits (411), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 158/284 (55%), Gaps = 28/284 (9%)

Query: 791  AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
             +S + E   I  L S +++ LQ + +  ++G++H   +   T+TGRLS+  PNLQN P 
Sbjct: 572  VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629

Query: 850  -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
             LE+ R  IR+AF+    NS+++A DY Q+ELR+LAH++  K +++AF+ G D H+ TAM
Sbjct: 630  RLEQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++      +E          ED  P         ++RR AK +NF + YG +  GL+ +
Sbjct: 689  RVF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLSNN 726

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAK  +D ++     +  + E   +E+R   +V T+  R R  P I S   + R
Sbjct: 727  LGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVR 786

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            N  ER AIN+P+QGSAAD+   AM+ + K      L  ++LLQV
Sbjct: 787  NFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQV 830


>gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3]
 gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3]
          Length = 878

 Score =  162 bits (411), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 158/284 (55%), Gaps = 28/284 (9%)

Query: 791  AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
             +S + E   I  L S +++ LQ + +  ++G++H   +   T+TGRLS+  PNLQN P 
Sbjct: 572  VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629

Query: 850  -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
             LE+ R  IR+AF+    NS+++A DY Q+ELR+LAH++  K +++AF+ G D H+ TAM
Sbjct: 630  RLEQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++      +E          ED  P         ++RR AK +NF + YG +  GL+ +
Sbjct: 689  RVF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLSNN 726

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAK  +D ++     +  + E   +E+R   +V T+  R R  P I S   + R
Sbjct: 727  LGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVR 786

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            N  ER AIN+P+QGSAAD+   AM+ + K      L  ++LLQV
Sbjct: 787  NFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQV 830


>gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591]
 gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68]
 gi|386583689|ref|YP_006080092.1| DNA polymerase I [Streptococcus suis D9]
 gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591]
 gi|353735835|gb|AER16844.1| DNA polymerase I [Streptococcus suis D9]
          Length = 878

 Score =  162 bits (411), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 158/284 (55%), Gaps = 28/284 (9%)

Query: 791  AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
             +S + E   I  L S +++ LQ + +  ++G++H   +   T+TGRLS+  PNLQN P 
Sbjct: 572  VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629

Query: 850  -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
             LE+ R  IR+AF+    NS+++A DY Q+ELR+LAH++  K +++AF+ G D H+ TAM
Sbjct: 630  RLEQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++      +E          ED  P         ++RR AK +NF + YG +  GL+ +
Sbjct: 689  RVF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLSNN 726

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAK  +D ++     +  + E   +E+R   +V T+  R R  P I S   + R
Sbjct: 727  LGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVR 786

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            N  ER AIN+P+QGSAAD+   AM+ + K      L  ++LLQV
Sbjct: 787  NFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQV 830


>gi|410620668|ref|ZP_11331528.1| DNA polymerase I [Glaciecola pallidula DSM 14239 = ACAM 615]
 gi|410159775|dbj|GAC26902.1| DNA polymerase I [Glaciecola pallidula DSM 14239 = ACAM 615]
          Length = 932

 Score =  162 bits (411), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 93/264 (35%), Positives = 147/264 (55%), Gaps = 26/264 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            + GRVH S +   T TGRLS+  PNLQN P    +   +RQAFIA PG  ++ ADY Q+E
Sbjct: 654  RTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRTSEGRLVRQAFIARPGYKVVAADYSQIE 713

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LRI+AHL+  K ++ AF +G D HS TA  ++                       VPL K
Sbjct: 714  LRIMAHLSKDKGLVSAFSSGKDIHSATAAEVFD----------------------VPLEK 751

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
             +  +ERR AK +NF + YG +  GL++   +   +A++ +DL++     VLT+ E+ ++
Sbjct: 752  VS-VNERRSAKAINFGLIYGMSAFGLSKQLNIGRHDAQQYMDLYFERYPGVLTYMESTRE 810

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +++  +V T+ GR    P IK+    +R   ERAAIN P+QG+AAD+   AM+++  +A
Sbjct: 811  GAKLAGYVSTVFGRRLYLPDIKASNAMRRKGAERAAINAPMQGTAADIIKKAMIDV--DA 868

Query: 1059 RLKELGWKLLLQVLFFFSFSFFSI 1082
             + ++  + +L ++       F I
Sbjct: 869  WINDINDQAILMIMQVHDELVFEI 892



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 24/138 (17%)

Query: 370 HACDTEVAKIDVKQETPVDHGEVICFSIYSG-------PEA-DFGNGKSCIWVDLLDGGG 421
           +A DTE   +D  Q       E++ FS  +G       P A D+      +  D      
Sbjct: 355 YALDTETTSVDYMQ------AELVGFSFATGENTACYIPVAHDYPGAPEQLKRD------ 402

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTE 479
            D+L +  P  EDPS KK+  +  +D +VL NYG+K+ G  +DTM  + + +S  +R   
Sbjct: 403 -DVLAQLKPILEDPSAKKIGQHIKYDKNVLANYGIKLQGILSDTMLASYVLNSVATRHNM 461

Query: 480 GGYSLEALTGDRKVMSED 497
              SL+ L G   +  ED
Sbjct: 462 DSLSLKYL-GHNTIHFED 478


>gi|406673495|ref|ZP_11080716.1| DNA polymerase I [Bergeyella zoohelcum CCUG 30536]
 gi|405585960|gb|EKB59752.1| DNA polymerase I [Bergeyella zoohelcum CCUG 30536]
          Length = 938

 Score =  162 bits (411), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 152/283 (53%), Gaps = 29/283 (10%)

Query: 792  ISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQP 848
            I  + E  +   L S ++  LP Q S +   +GRVH S +  T  TGRL++  PNLQN P
Sbjct: 634  IPLILEYRTYQKLKSTYVDALPTQISKI---DGRVHTSFSQTTAATGRLASLNPNLQNIP 690

Query: 849  ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
               +   +IR AF A  G  +I ADY Q+ELR++A ++  K+M++AF+ G D H+ TA  
Sbjct: 691  IRTERGQQIRGAFRAEKGKKIISADYSQIELRLIAEISGEKNMIEAFQKGEDIHASTAAK 750

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                    K P+    +   ++R +AK +NF I YG+    LA   
Sbjct: 751  LF--------------------KIPI---DEVNKTQRSQAKTVNFGIIYGQGAFALAEQT 787

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S  E+K+ +D ++     +  W  A+ K++R   +V TLLGR R    I+S     R+
Sbjct: 788  GLSRAESKQMIDAYFQTYPTMKEWMTAQVKKARELGYVETLLGRKRHLKDIQSNNFVVRS 847

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            H ER A+N P+QGSAAD+   AM+EISK  + +    K+LLQV
Sbjct: 848  HAERNAVNAPIQGSAADIIKIAMIEISKKLKEENRATKMLLQV 890



 Score = 46.6 bits (109), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
           F PFFE  +I K+ HN+ +D  VL+NYG+   G   DTM    L +   R
Sbjct: 415 FKPFFEAKTIMKIAHNFKYDYKVLKNYGVHFDGVLFDTMIAHYLLNPDGR 464


>gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 901

 Score =  162 bits (411), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 139/253 (54%), Gaps = 25/253 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GR+H + N I   TGRLS+ +PNLQN P    +  +IRQ F+  PG  +L+ ADY Q+E
Sbjct: 623  DGRIHTTFNQIVAATGRLSSEKPNLQNIPIRTVEGRRIRQGFVVGPGYETLLTADYSQIE 682

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LRI+AHL+  +S++ AF++G DFH  TA  ++      +E  QV  E             
Sbjct: 683  LRIMAHLSGDESLIAAFESGHDFHKTTAARVFD-----IEPEQVTGEM------------ 725

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  R K K +N+ +AYG +  GLA    + V+EAK   + ++ E   V  +  A   
Sbjct: 726  ------RAKIKAMNYGLAYGLSDFGLAGQLNIPVQEAKALKEEYFEEFGGVRDFLNAIVA 779

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R D +  T++GR R  P + S  R +R   ER A+N P+QGSAAD+   AML +    
Sbjct: 780  QARQDGYTETIMGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVQSAV 839

Query: 1059 RLKELGWKLLLQV 1071
            +   LG ++LLQV
Sbjct: 840  KEAALGSRMLLQV 852


>gi|378765067|ref|YP_005193526.1| DNA polymerase I [Pantoea ananatis LMG 5342]
 gi|386017735|ref|YP_005936034.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
 gi|386077330|ref|YP_005990855.1| DNA polymerase I PolA [Pantoea ananatis PA13]
 gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
 gi|354986511|gb|AER30635.1| DNA polymerase I PolA [Pantoea ananatis PA13]
 gi|365184539|emb|CCF07489.1| DNA polymerase I [Pantoea ananatis LMG 5342]
          Length = 928

 Score =  162 bits (410), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 99/246 (40%), Positives = 134/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+  PNLQN P    +  +IRQAF+A  GN 
Sbjct: 643  LPLMINPVSG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNR 699

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                  
Sbjct: 700  IVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATASEVF------------------ 741

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 VPL K     +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 742  ----GVPLSK-VTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 796

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++ +  + +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+  
Sbjct: 797  VLRYMENTRQLAASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIK 856

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 857  RAMIAV 862



 Score = 43.9 bits (102), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 108/257 (42%), Gaps = 60/257 (23%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L +  P  EDP   KV  N  +D  VL+NY ++++G   DTM  + + +S     G + 
Sbjct: 400 VLAQLKPLLEDPDASKVGQNLKYDRGVLKNYDIELAGIKYDTMLESYILNS---VVGKHD 456

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+   + ++     +++   KG     F  +I++                       
Sbjct: 457 MDSLSA--RWLNHKTITFEEIAGKGKNQLTF-NQIAL----------------------- 490

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
                    E    Y+A D+  TL+L+       L+M  +L+ +  P K     +++   
Sbjct: 491 ---------EQAAHYAAEDADVTLQLH-------LKMWPELEKEAGPKK----VFEQIEM 530

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK-HCPDAKYMNVGSDT 662
           P  +++ ++E  G+L+D+  L++  K          +R  +   K H    +  N+ S  
Sbjct: 531 PLLKVISRVERNGVLIDQAILAQHSK-------ELTSRLAELELKAHELAGEPFNLSSTK 583

Query: 663 QLRQLLF---GGKPNSK 676
           QL+ +LF   G KP  K
Sbjct: 584 QLQVILFEKQGIKPTKK 600


>gi|410859668|ref|YP_006974902.1| DNA polymerase I [Alteromonas macleodii AltDE1]
 gi|410816930|gb|AFV83547.1| DNA polymerase I [Alteromonas macleodii AltDE1]
          Length = 930

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/247 (37%), Positives = 137/247 (55%), Gaps = 28/247 (11%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S +   T TGRLS+  PNLQN P   ++  ++RQAF+   GN  + ADY 
Sbjct: 649  INHRTGRVHTSYHQAITATGRLSSTDPNLQNIPIRNEEGRRVRQAFVPRKGNKFVAADYS 708

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                       VP
Sbjct: 709  QIELRIMAHLSGDKGLLDAFAHGKDIHKATASEVFG----------------------VP 746

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            L  +    +RR AK +NF + YG +  GLA+   +   EA+K +DL++     VL + ++
Sbjct: 747  L-DEVTTEQRRSAKAINFGLIYGMSAFGLAKQLNIPRNEAQKYMDLYFERYPGVLEYMDS 805

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE-- 1053
             ++ ++   +V T+ GR    P IK+   ++R   ERAAIN P+QG+AAD+   AM++  
Sbjct: 806  TRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINAPMQGTAADIIKMAMIKVD 865

Query: 1054 --ISKNA 1058
              ISKNA
Sbjct: 866  DWISKNA 872


>gi|374287093|ref|YP_005034178.1| DNA polymerase I [Bacteriovorax marinus SJ]
 gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ]
          Length = 883

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/252 (37%), Positives = 140/252 (55%), Gaps = 24/252 (9%)

Query: 821  NGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            +G++H   N N   TGRLS+  PNLQN P   +   ++R+ FIA PG  L+ ADY Q+EL
Sbjct: 607  SGKIHTHFNQNVAATGRLSSNHPNLQNIPIRSELGRRVRKGFIAGPGKILLAADYSQVEL 666

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAH +N K+M+DAFK G D H RTA  +                        VP +++
Sbjct: 667  RLLAHFSNDKTMIDAFKKGVDIHRRTASEIM----------------------GVP-VEE 703

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
              +++R KAK +NF + YG++  GLA   K+  +EAK+ +  ++     V  + +  K+E
Sbjct: 704  VGSNDRSKAKAVNFGLMYGQSSFGLAAALKIPRKEAKEYITNYFERFSSVKGYLDHLKEE 763

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
                 +  TL GR R    I S  R+ + + ER AIN+P+QG+AAD+   AM+ I K   
Sbjct: 764  CEKTGYAITLKGRKRYLADIHSTNRTIKANAERVAINSPIQGTAADIIKLAMINIQKVLD 823

Query: 1060 LKELGWKLLLQV 1071
             K+L  K++LQV
Sbjct: 824  DKKLKSKMILQV 835


>gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 939

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/267 (39%), Positives = 152/267 (56%), Gaps = 33/267 (12%)

Query: 809  ILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPA-LEKDRYKIRQAFIAVPG 866
            +LPL    + G++GR+H S N   T TGRLS+  PNLQN P  LE+ R +IR+AF A PG
Sbjct: 651  LLPL----IDGEDGRIHTSFNQAVTATGRLSSTEPNLQNIPVRLEQGR-RIRKAFTA-PG 704

Query: 867  N--SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLL 924
            +  +L+ ADY Q+ELRILAHL+   S  DAF    D H+RTA  ++              
Sbjct: 705  DDWTLLAADYSQIELRILAHLSGDPSFKDAFAKNQDIHTRTASEVFG------------- 751

Query: 925  EWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYN 984
                     VP+ ++  +  RR+AK +NF I YG +  GL+RD  V   EA++ +D +++
Sbjct: 752  ---------VPM-ENVTSEMRRRAKAVNFGIVYGISDFGLSRDLGVLRAEARQYIDGYFD 801

Query: 985  ERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAA 1044
                V  + +    E+R   +V TLLGR RR P +    + ++N  ERAA+NTP+QG+AA
Sbjct: 802  RYSGVKGYIDEIIAEARRQGYVTTLLGRRRRLPDLFVKNKIRQNFGERAAMNTPIQGTAA 861

Query: 1045 DVAMCAMLEISKNARLKELGWKLLLQV 1071
            D+   AM+ I      K L  ++LLQV
Sbjct: 862  DIIKAAMVRIPGLLAAKGLKTRMLLQV 888


>gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
 gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
          Length = 944

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/259 (36%), Positives = 143/259 (55%), Gaps = 26/259 (10%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + +S + GRVH S ++ +T TGRLS+  PNL N P   ++  KIR+AF+A PG  LI AD
Sbjct: 658  AAISEQTGRVHTSFSLASTTTGRLSSSDPNLMNIPIRTEEGRKIRRAFVAEPGKVLISAD 717

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+ +   +  AF+ G D H+ TA  M+                       
Sbjct: 718  YSQIELRLLAHIGDIPQLKRAFREGLDIHAMTASEMFG---------------------- 755

Query: 934  VPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
            VP+  +   SE RR+AK +NF I YG +  GLA    +  +EA   +  ++     +  +
Sbjct: 756  VPV--EGMPSETRRRAKAINFGIIYGISAFGLANQLGIPQDEAGAYIKTYFERFPGIRAY 813

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             +  K+ +R    VHT+ GR    PA+KS ++++R   +RAAIN P+QGSAADV   AM+
Sbjct: 814  MDRTKQAARSQGFVHTIFGRKVNIPAVKSKSQAERAFGDRAAINAPIQGSAADVMRRAMI 873

Query: 1053 EISKNARLKELGWKLLLQV 1071
             +    + + L  ++LLQV
Sbjct: 874  RMPGALKAEGLTARMLLQV 892


>gi|395788138|ref|ZP_10467714.1| DNA polymerase I [Bartonella birtlesii LL-WM9]
 gi|395409920|gb|EJF76505.1| DNA polymerase I [Bartonella birtlesii LL-WM9]
          Length = 968

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 144/268 (53%), Gaps = 32/268 (11%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLATTSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+           V 
Sbjct: 732  PKGHVLLSADYSQIELRILAHIADITALKEAFAKGQDIHAMTASQMF----------GVA 781

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
            +E    D              RR+AK +NF I YG +  GLA     S +EA + + L++
Sbjct: 782  IEGMDSDI-------------RRRAKAINFGIIYGISAFGLANQLGFSRQEAGRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYMEKTKIFARQNGYVETIFGRRIHYPEIKATNLQVRSFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AD+   AM+ +    + ++L  K+LLQV
Sbjct: 889  ADIIRRAMIHMEDALQKEKLSAKMLLQV 916



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 127/313 (40%), Gaps = 80/313 (25%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP-EADFGNGKSCIWVDLLDGGGRDL----- 424
           A DTE   +D  Q       +++ FS+   P +A +   +     D L GG R +     
Sbjct: 382 AFDTETTSLDPLQ------AKLVGFSLALKPGKAAYVPLEHVEGEDDLLGGARIVGQIEP 435

Query: 425 ---LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
              L    P  E+ ++ K+  N  +D  V++  G+ +  F  DTM ++ + D+   T   
Sbjct: 436 QKALALLKPILENQAVLKIGQNIKYDWLVMKQKGIVIRSFD-DTMLLSYVLDAGSLTHN- 493

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSK---GNTDEGFMGKISMKDIFGRRKLKKDGSAGKI 538
                                 D+SK   G+T       I+ KD+    K        KI
Sbjct: 494 --------------------MDDLSKRWLGHT------PIAYKDLTHNGK--------KI 519

Query: 539 STIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFY 598
           ++ A V+  Q         Y+A D+  TL+L++ LK +L+             + M   Y
Sbjct: 520 TSFAKVDLKQAT------LYAAEDADVTLRLWQVLKPQLV------------SQRMTKIY 561

Query: 599 QEYWQPFGEILVKMETEGMLVDREYLSEIE-KVARAEQEAAVNRFRKWASKHCPDAKYMN 657
           + + +P  E+L +ME  G+LVDR+ L  +  ++A+A        ++    K        N
Sbjct: 562 ERFDRPLIEVLARMEERGILVDRQILLRLSGELAQAALILEEEIYQLAGEK-------FN 614

Query: 658 VGSDTQLRQLLFG 670
           + S  QL  +LFG
Sbjct: 615 IASPKQLGDILFG 627


>gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
          Length = 930

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/247 (37%), Positives = 137/247 (55%), Gaps = 28/247 (11%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S +   T TGRLS+  PNLQN P   ++  ++RQAF+   GN  + ADY 
Sbjct: 649  INHRTGRVHTSYHQAITATGRLSSTDPNLQNIPIRNEEGRRVRQAFVPRKGNKFVAADYS 708

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                       VP
Sbjct: 709  QIELRIMAHLSGDKGLLDAFAHGKDIHKATASEVFG----------------------VP 746

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            L  +    +RR AK +NF + YG +  GLA+   +   EA+K +DL++     VL + ++
Sbjct: 747  L-DEVTTEQRRSAKAINFGLIYGMSAFGLAKQLNIPRNEAQKYMDLYFERYPGVLEYMDS 805

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE-- 1053
             ++ ++   +V T+ GR    P IK+   ++R   ERAAIN P+QG+AAD+   AM++  
Sbjct: 806  TRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINAPMQGTAADIIKMAMIKVD 865

Query: 1054 --ISKNA 1058
              ISKNA
Sbjct: 866  DWISKNA 872


>gi|395782170|ref|ZP_10462574.1| DNA polymerase I [Bartonella rattimassiliensis 15908]
 gi|395419109|gb|EJF85410.1| DNA polymerase I [Bartonella rattimassiliensis 15908]
          Length = 967

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 145/268 (54%), Gaps = 32/268 (11%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 679  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIA 730

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+ K++ +AF  G D H+ TA  M+         G  +
Sbjct: 731  PKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASQMF---------GIAI 781

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
               H +               RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 782  EGMHSDI--------------RRRAKAINFGIIYGISAFGLANQLGISRQEAGRYIQLYF 827

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K   R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSA
Sbjct: 828  ERFPGIKDYMEKTKNFVRENGYVETIFGRRIHYPEIKTKNVKIRSLNERAAINAPIQGSA 887

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AD+   AM+++    + + L  K+LLQV
Sbjct: 888  ADIIRRAMIKMEDALKGESLSAKMLLQV 915



 Score = 48.9 bits (115), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 151/390 (38%), Gaps = 113/390 (28%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNE--- 427
           A DTE   +D  Q       +++ FS+   PE       + I ++  D G  DLL +   
Sbjct: 380 AFDTETTSLDPMQ------AKLVGFSLALQPEK-----AAYIPLEHFDEGEGDLLRDGRI 428

Query: 428 ------------FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSS 475
                         P  ED ++ K+  N  +D  V++ Y +++  F  DTM ++ + D+ 
Sbjct: 429 ASQIEIQKALALLKPLLEDSAVLKIGQNIKYDWLVMKQYDIEIRSFD-DTMLLSYVLDAG 487

Query: 476 RRTEGGYSL-EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
             T     L E   G + +      AY+  M KG                          
Sbjct: 488 TLTHNMDDLSERWLGHKPI------AYKDLMHKGK------------------------- 516

Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSM 594
             KI++ A V+  Q         Y+A D+  TL+L++ LK +L+             + M
Sbjct: 517 --KITSFAQVDLKQAT------LYAAEDADITLRLWQVLKPQLV------------AQGM 556

Query: 595 FDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKHC 650
              Y+   +P  E+L +ME  G+L+DR+ L     E+ + A   +E    +         
Sbjct: 557 VKIYERLDRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIYKQ--------- 607

Query: 651 PDAKYMNVGSDTQLRQLLF-------GGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKT 703
            D K+ N+ S  QL  +LF       G K      S S  +         E + AEG   
Sbjct: 608 ADEKF-NLASPKQLGDILFDKMGLPGGTKTKGGQWSTSAQV--------LEELAAEGHIL 658

Query: 704 PSK---FRNIT-LRSIGVD-LPTEMYTATG 728
           P K   +R +T L+S   D LP+ +   TG
Sbjct: 659 PRKIIEWRQLTKLKSTYADALPSYILPKTG 688


>gi|406675197|ref|ZP_11082387.1| DNA polymerase I [Aeromonas veronii AMC35]
 gi|404627967|gb|EKB24756.1| DNA polymerase I [Aeromonas veronii AMC35]
          Length = 921

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 155/307 (50%), Gaps = 33/307 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 596  KGAPSTAEEVLA---ELAETYELPRLLMEHRGLAKLKSTYTDKLPLM---IKPRTGRVHT 649

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 650  SYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 709

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++    +AV T                         R
Sbjct: 710  SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTTDM-----------------------R 746

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL+++    VL + E  ++++    +
Sbjct: 747  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFDRYPGVLEYMERTRQQAEAQGY 806

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 807  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDSWIRGIEDES 866

Query: 1065 WKLLLQV 1071
             ++L+QV
Sbjct: 867  IRMLMQV 873


>gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
 gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
          Length = 920

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 136/265 (51%), Gaps = 24/265 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + G +H S N   T TGRLS+  PNLQN P   +D  +IR+ FI   G     ADY 
Sbjct: 640  INPRTGHIHTSFNQTVTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEDGCLFFSADYS 699

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR++AHL+  K M++AF+ G D H+ TA  +Y                 G+D     
Sbjct: 700  QIELRVMAHLSGDKHMIEAFQHGYDIHAATAAKIY-----------------GKD----- 737

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD    ER KAK  NF I YG T  GLA    +   EAK+ +D ++    +V  + E 
Sbjct: 738  -MKDVTRDERTKAKRANFGIIYGITVFGLAERLGIDRNEAKQLIDGYFTTFPQVYDYMEQ 796

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K  +R   +V T   R R  P I S   + R   ER AIN P+QGSAAD+   AM+ I 
Sbjct: 797  AKATAREQGYVETFFHRRRYLPDINSRNATVRGFAERNAINAPIQGSAADIIKVAMIRIY 856

Query: 1056 KNARLKELGWKLLLQVLFFFSFSFF 1080
            K  + + +  K++LQV    +FS  
Sbjct: 857  KRFKRENIQSKMILQVHDELNFSVL 881


>gi|410610880|ref|ZP_11321985.1| DNA polymerase I [Glaciecola psychrophila 170]
 gi|410169591|dbj|GAC35874.1| DNA polymerase I [Glaciecola psychrophila 170]
          Length = 916

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 136/239 (56%), Gaps = 24/239 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S +   T TGRLS+  PNLQN P   ++  ++RQAFIA  G  ++ ADY 
Sbjct: 635  INARTGRVHTSYHQAITATGRLSSTEPNLQNIPIRTEEGRRVRQAFIAREGYKIVAADYS 694

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL++ K +L+AF  G D H+ TA  ++                   D P   
Sbjct: 695  QIELRIMAHLSSDKGLLNAFATGQDIHTATASEVF-------------------DTP--- 732

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             LK+    +RR AK +NF + YG +  GL++   +S  +A+K +DL++     VLT+ E+
Sbjct: 733  -LKEVSIEQRRNAKAINFGLIYGMSAFGLSKQLNISRFDAQKYMDLYFERYPSVLTYMES 791

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             ++ ++   +V T+ GR    P I +    +R   ERAAIN P+QG+AAD+   AML +
Sbjct: 792  TRQIAKEKGYVSTVFGRRLYLPEINASNGMRRKGAERAAINAPMQGTAADIIKKAMLAV 850



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 59/248 (23%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L    P  E+P IKKV  +  +D +VL NY + + G   DTM  +            Y 
Sbjct: 388 VLATLKPLLENPDIKKVGQHLKYDKNVLANYDINLQGIAFDTMLES------------YV 435

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTI 541
           L ++T             + DM   +  E ++G+  I  +DI G+   +   +   +   
Sbjct: 436 LNSVTT------------RHDMD--SLAEKYLGQSTIHFEDIAGKGVKQVTFNQIPLDKA 481

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
           +P              Y+A D+  TL+L+K + +KL E            K + + ++E 
Sbjct: 482 SP--------------YAAEDADITLRLHKVIWRKLSE-----------EKDLVNVFKEI 516

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
             P   +L KME  G+L+D       +K+A+  Q+ AV         H    +  N+GS 
Sbjct: 517 ELPLSPVLAKMEQFGVLIDS------QKLAQQSQDLAVRILELEKEVHTLAGEEFNLGSP 570

Query: 662 TQLRQLLF 669
            QL+++L+
Sbjct: 571 KQLQEILY 578


>gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1043

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/257 (38%), Positives = 142/257 (55%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++  +GRVH S  +  T TGRLS+  PNLQN P   +   KIR+AFIA PG  L+ ADY 
Sbjct: 759  INPSSGRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRRAFIAPPGRKLVSADYS 818

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+ KS+ +AF    D H+ TA  M+                       VP
Sbjct: 819  QIELRLLAHIADIKSLKNAFAENLDIHAMTASEMFG----------------------VP 856

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA   +  ++     +  + +
Sbjct: 857  V--EGMPSEIRRRAKAINFGIIYGISAFGLANQLAIPREEAAAYIKKYFERFPGIRAYMD 914

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              KK++R + +V T+ GR   +P IK+   S+R   ERAAIN P+QGSAAD+   AM+ +
Sbjct: 915  DTKKKARENGYVETIFGRKCHYPRIKASNPSERALNERAAINAPIQGSAADIIRRAMIHM 974

Query: 1055 SKNARLKELGWKLLLQV 1071
                  ++L  ++LLQV
Sbjct: 975  EAALAAEKLSAQMLLQV 991



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 109/280 (38%), Gaps = 62/280 (22%)

Query: 399 SGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
           SG   D   GK  +   L  G    +L    P  EDPSI K+  N  +D  VL+ +G+++
Sbjct: 491 SGEGQDLFEGKGLLPGQLPIG---VVLERLKPLLEDPSILKIGQNVKYDWIVLKQHGVEM 547

Query: 459 SGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKI 518
                DT+ ++ + D+                                 G TD G M  +
Sbjct: 548 RPLD-DTLLLSYVLDA---------------------------------GLTDHG-MDVL 572

Query: 519 SMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLL 578
           S K + G + +     AG   T        R   +    Y+A D+  TL+L++ LK +L 
Sbjct: 573 SEKHL-GHKPIPFSAVAGSGRTFI---GFARVAIDKATEYAAEDADVTLRLWRVLKPRL- 627

Query: 579 EMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAA 638
                      P + M   Y+   +P  ++L +ME  G+ +D   L       R   + A
Sbjct: 628 -----------PAEKMTTVYETLERPMIDVLARMERRGVAIDPPLLG------RLSSDFA 670

Query: 639 VNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSK 676
            +  R  A  +    +  N+GS  QL  +LFG  G P +K
Sbjct: 671 QDMARYEAEIYELAGEKFNLGSPKQLGDILFGKLGLPGAK 710


>gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580]
 gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580]
          Length = 951

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 151/296 (51%), Gaps = 43/296 (14%)

Query: 792  ISALCEVCSIDSLISNFI---------------LPLQGSNVSGKNGRVHCS-LNINTETG 835
            IS L E+ +ID L +  +               LPL    ++  NGR+H S +   T TG
Sbjct: 635  ISVLEELAAIDELPAKILDYRASAKLKSGYADALPL----LADANGRIHTSFIQTGTATG 690

Query: 836  RLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAF 895
            RLS+R PNLQN P   ++  KIR+AF A  G  LI ADY Q+EL ILAH +  ++++ AF
Sbjct: 691  RLSSRDPNLQNIPIRGEEGRKIRKAFYAADGCKLISADYAQIELVILAHFSQDENLVKAF 750

Query: 896  KAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSI 955
            + G D H+ TA  ++                       VP+ ++     RR AK++NF +
Sbjct: 751  RQGTDVHAATAALIFN----------------------VPV-ENVVPDMRRIAKVINFGV 787

Query: 956  AYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARR 1015
             YG +   LA   ++S  EA   +  ++     V  + E  K+ +     V TL+GR R 
Sbjct: 788  MYGMSAFRLANQLRISRTEAADFITRYFTTYSGVAAFMETLKESAAEKGFVETLMGRRRY 847

Query: 1016 FPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              AI S  ++QR   ER AINTP+QGSAAD+   AML + +  + + L   LLLQV
Sbjct: 848  IRAINSRNQTQRAAAERIAINTPIQGSAADIVKTAMLHVDRALKRQHLSAHLLLQV 903


>gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
 gi|444309209|ref|ZP_21144849.1| DNA polymerase I [Ochrobactrum intermedium M86]
 gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
 gi|443487600|gb|ELT50362.1| DNA polymerase I [Ochrobactrum intermedium M86]
          Length = 985

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/292 (36%), Positives = 146/292 (50%), Gaps = 28/292 (9%)

Query: 823  RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH C    +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY Q+ELR+
Sbjct: 707  RVHTCYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 766

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 767  LAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVPV--EGM 802

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + EA K  +
Sbjct: 803  PSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFA 862

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   +P I++     R   ERAAIN P+QGSAAD+   AM+ +      
Sbjct: 863  REHGYVETIFGRRAHYPDIRASNPQIRAFNERAAINAPIQGSAADIIRRAMIRMEDALAK 922

Query: 1061 KELGWKLLLQVL--FFFSFSFFSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
            ++L  ++LLQV     F      +   VS    V+ NA  P    +  LH D
Sbjct: 923  EKLAARMLLQVHDELIFEVPENEVEKTVSVVRHVMENAAMPAVSLAVPLHVD 974



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 127/324 (39%), Gaps = 90/324 (27%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP--------EADFGNGKSCIWVDLLDGG-- 420
           A DTE   +D  Q       E++ FS+   P        +   G G      DLL GG  
Sbjct: 399 AFDTETTSVDPMQ------AELVGFSLALAPGRAAYIPLQHKSGAG------DLLGGGTV 446

Query: 421 -GRDLLNE----FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSS 475
            G+  L E         ED S+ K+  N  +D  ++  YG+    F  DTM ++ + D+ 
Sbjct: 447 EGQIPLGEALAALKTVLEDASVLKIAQNMKYDWLIMRRYGINTVSFD-DTMLISYVLDAG 505

Query: 476 RRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDG 533
               G + ++ L+                       E ++G   I+ KD+ G        
Sbjct: 506 ---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG-------- 531

Query: 534 SAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKS 593
            +GK S    + ++ R       +Y+A D+  TL+L++ LK +L              + 
Sbjct: 532 -SGKSSVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------AAEG 573

Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDA 653
           +   Y+   +P  ++L +ME  G+ VDR+ LS +         A  +   + A +     
Sbjct: 574 LMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYELAGER---- 629

Query: 654 KYMNVGSDTQLRQLLFG--GKPNS 675
               +GS  QL  +LFG  G P +
Sbjct: 630 --FTIGSPKQLGDILFGKMGLPGA 651


>gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
 gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
          Length = 897

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/236 (39%), Positives = 130/236 (55%), Gaps = 24/236 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            NGRVH S N   T TGRLS+  PNLQN P    +  KIR+AFIA  G  ++ ADY Q+EL
Sbjct: 620  NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIEL 679

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K++L AF    D HS TA  +     + V + Q                  
Sbjct: 680  RIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQ------------------ 721

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RRKAK +NF + YG +  GLAR  ++   EA++ +D+++N    V  +    K+ 
Sbjct: 722  -----RRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEF 776

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            ++ + +V T+LGR    P I S    QRN  ERAAIN P+QG+AAD+   AM+ ++
Sbjct: 777  AKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADIIKKAMINVN 832



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L++  P F D    KV HN+ FD  VL  Y ++++G   DTM MA +  SS    G + 
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+                                K+  G   +     AG   T   
Sbjct: 427 MDSLS--------------------------------KEHLGIEPIAYTVIAG---TGKQ 451

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            + L + + E+   Y+A D+  T +L+    K LLE            K +F  Y E   
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNHF-KALLEQD----------KVLFKLYCELEM 500

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
           P   IL +ME  G+ +D   L         +Q A++    K     C +   +  N+ S 
Sbjct: 501 PLTIILNQMEKTGVKIDATKL--------IQQSASLETSIKELESKCYNLAGQEFNLSSP 552

Query: 662 TQLRQLLF 669
            QLR++LF
Sbjct: 553 VQLREILF 560


>gi|385793571|ref|YP_005826547.1| hypothetical protein [Francisella cf. novicida Fx1]
 gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1]
          Length = 897

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/236 (39%), Positives = 130/236 (55%), Gaps = 24/236 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            NGRVH S N   T TGRLS+  PNLQN P    +  KIR+AFIA  G  ++ ADY Q+EL
Sbjct: 620  NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIEL 679

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K++L AF    D HS TA  +     + V + Q                  
Sbjct: 680  RIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQ------------------ 721

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RRKAK +NF + YG +  GLAR  ++   EA++ +D+++N    V  +    K+ 
Sbjct: 722  -----RRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEF 776

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            ++ + +V T+LGR    P I S    QRN  ERAAIN P+QG+AAD+   AM+ ++
Sbjct: 777  AKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADIIKKAMINVN 832



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L++  P F D    KV HN+ FD  VL  Y ++++G   DTM MA +  SS    G + 
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+                                K+  G   +     AG   T   
Sbjct: 427 MDSLS--------------------------------KEHLGIEPIAYTAIAG---TGKQ 451

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            + L + + E+   Y+A D+  T +L+    K LLE            K +F  Y E   
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNHF-KALLEQD----------KVLFKLYCELEM 500

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
           P   IL +ME  G+ +D   L         +Q A++    K     C +   +  N+ S 
Sbjct: 501 PLTIILNQMEKTGVKIDATKL--------IQQSASLETSIKELESKCYNLAGQEFNLSSP 552

Query: 662 TQLRQLLF 669
            QLR++LF
Sbjct: 553 VQLREILF 560


>gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103]
 gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103]
          Length = 928

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/246 (40%), Positives = 134/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+  PNLQN P    +  +IRQAF+A  GN 
Sbjct: 643  LPLMINPVSG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNR 699

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                  
Sbjct: 700  IVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATASEVF------------------ 741

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 VPL K     +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 742  ----GVPLSK-VTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 796

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++ +  + +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+  
Sbjct: 797  VLRYMENTRQLAASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIK 856

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 857  RAMIAL 862



 Score = 43.9 bits (102), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 108/257 (42%), Gaps = 60/257 (23%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L +  P  EDP   KV  N  +D  VL+NY ++++G   DTM  + + +S     G + 
Sbjct: 400 VLAQLKPLLEDPDASKVGQNLKYDRGVLKNYDIELAGIKYDTMLESYILNS---VVGKHD 456

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+   + ++     +++   KG     F  +I++                       
Sbjct: 457 MDSLSA--RWLNHKTITFEEIAGKGKNQLTF-NQIAL----------------------- 490

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
                    E    Y+A D+  TL+L+       L+M  +L+ +  P K     +++   
Sbjct: 491 ---------EQAAHYAAEDADVTLQLH-------LKMWPELEKEAGPKK----VFEQIEM 530

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK-HCPDAKYMNVGSDT 662
           P  +++ ++E  G+L+D+  L++  K          +R  +   K H    +  N+ S  
Sbjct: 531 PLLKVISRVERNGVLIDQAILAQHSK-------ELTSRLAELELKAHELAGEPFNLSSTK 583

Query: 663 QLRQLLF---GGKPNSK 676
           QL+ +LF   G KP  K
Sbjct: 584 QLQVILFEKQGIKPTKK 600


>gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
 gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
          Length = 892

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/268 (36%), Positives = 143/268 (53%), Gaps = 32/268 (11%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            ++  ILP        + GR+H S N   T TGRLS+  PNLQN P   ++  +IR+AF+ 
Sbjct: 608  LAELILP--------ETGRIHTSFNQTATATGRLSSTDPNLQNIPIRTEEGRQIRKAFVP 659

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
             PG + + ADY Q+ELRILAH +    +++AF+   D H+RTA  ++          Q+ 
Sbjct: 660  RPGWTFVSADYSQVELRILAHYSQDPILIEAFENDEDIHTRTASEVF----------QLF 709

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
             E   ED              RR+AK +NF I YG +P GLARD  +S + AK  +D ++
Sbjct: 710  PEMITEDV-------------RRQAKAINFGIVYGISPFGLARDLGISQKMAKNYMDSYF 756

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
            +    V  + +    ++R      T+ GR R  P I S  R+ + + ERAAINTP+QG+A
Sbjct: 757  SRYSRVKEFMDKAIADARETGQTRTMFGRIRYLPDIDSPNRTLQGYAERAAINTPIQGTA 816

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AD+   AM+   K    ++L   +LL V
Sbjct: 817  ADIMKLAMIATEKALAKEKLVSVMLLSV 844



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 97/248 (39%), Gaps = 60/248 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L   AP FE+  I K+  N  +D  VL   G K+ G   DTM  A L + +RR+   Y 
Sbjct: 365 VLRILAPAFENTKITKIGQNVKYDWTVLSRCGFKIDGPVFDTMIAAYLLNPTRRS---YG 421

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKISTI 541
           L+ L  D                       ++    IS +D+ G       G   K  + 
Sbjct: 422 LDRLAAD-----------------------YLNHRMISYQDVTGT------GKNAKCFSA 452

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
            P+EE         I Y+A D+  T  L++ L+K+L +              +F+  +  
Sbjct: 453 VPLEE--------AIPYAAEDADITFSLHRLLEKELKQ------------GGLFELLETI 492

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
             P   +L+ ME  G+ VDRE L+ + K    + E         A +        N+ S 
Sbjct: 493 EMPLVPVLMHMEMAGVAVDREALAALSKELEGQLEKLEGEIYGLAGET------FNINSP 546

Query: 662 TQLRQLLF 669
            QL  +LF
Sbjct: 547 QQLGVILF 554


>gi|359404893|ref|ZP_09197700.1| DNA-directed DNA polymerase [Prevotella stercorea DSM 18206]
 gi|357559871|gb|EHJ41298.1| DNA-directed DNA polymerase [Prevotella stercorea DSM 18206]
          Length = 878

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/299 (33%), Positives = 150/299 (50%), Gaps = 25/299 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
            Q+ R     +  + E   +  L+  ++  L    ++ + G +H + N   T TGRLS+  
Sbjct: 565  QQLRSKAPIVDHILEHRGLKKLLGTYVDALP-KLINPRTGHIHTTFNQAVTATGRLSSSN 623

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P   +D  +IR+ FI  PG     ADY Q+ELR++AHL+  ++M++AF+ G D 
Sbjct: 624  PNLQNIPVRGEDGKEIRKCFIPEPGQLFFSADYSQIELRVMAHLSGDENMIEAFREGYDI 683

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA  +Y    N+V   Q                       R KAK  NF I YG T 
Sbjct: 684  HAATAARIYKEDINSVSRDQ-----------------------RTKAKRANFGIIYGITV 720

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA    +S +EAK+ ++ ++N    V  + E  K+ +R   +  T   R R  P I S
Sbjct: 721  FGLAERLDISRDEAKQLIEGYFNTFPGVHAYMEKAKETAREHGYAETFFHRRRYLPDITS 780

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSFF 1080
               + RN  ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV    +FS  
Sbjct: 781  HNATVRNFAERNAINAPIQGSAADIIKIAMVRIYERFQREGIRSKMILQVHDELNFSVL 839


>gi|347360119|ref|YP_389938.2| DNA polymerase I [Desulfovibrio alaskensis G20]
 gi|342906655|gb|ABB40243.2| DNA polymerase I [Desulfovibrio alaskensis G20]
          Length = 865

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 164/312 (52%), Gaps = 28/312 (8%)

Query: 761  GCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGK 820
            G    ++ KG  AS ++    +   +     I  + E   ++ L S ++ PL    ++ +
Sbjct: 529  GLKAGSKTKGGQASTSQAVLEKLAGKHPV--IDTILEYRKLEKLRSTYLEPL--PRLAQE 584

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            N R+H + N + T TGRLS+ +PNLQN P       ++R+ F A PGN L+ ADY Q+EL
Sbjct: 585  NDRIHTTFNQLATATGRLSSSQPNLQNIPVRGPMGQRMRRCFTAAPGNKLVAADYSQIEL 644

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAH++   +++++F    D HSRTA  +Y              +    D  P      
Sbjct: 645  RVLAHVSADPTLIESFTRNEDIHSRTAGLLY--------------DVTAADVTP------ 684

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                +RR AK +NF + YG  P  LA++ KV++ EAK+ ++ ++++   +  + +  ++ 
Sbjct: 685  ---DQRRNAKTINFGLIYGMGPQKLAQELKVTLNEAKEFIERYFSKLSHLKEFYDNVEQS 741

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +R    V TL GR R  P I S     R+   R AINT VQGSAAD+   AML+ + +  
Sbjct: 742  AREHGFVTTLAGRRRLLPEIHSDNNQLRSQARRQAINTVVQGSAADIIKIAMLKAAADET 801

Query: 1060 LKELGWKLLLQV 1071
            L++L   L+LQV
Sbjct: 802  LQQLNAALILQV 813


>gi|348027482|ref|YP_004870168.1| DNA polymerase I [Glaciecola nitratireducens FR1064]
 gi|347944825|gb|AEP28175.1| DNA polymerase I [Glaciecola nitratireducens FR1064]
          Length = 932

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 134/236 (56%), Gaps = 24/236 (10%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            + GRVH S +   T TGRLS+  PNLQN P    +  ++RQAFIA PG  ++ ADY Q+E
Sbjct: 654  RTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRTAEGRQVRQAFIARPGYKVVAADYSQIE 713

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LRI+AHL+  K ++ AF  G D HS TA  ++                   D P    L+
Sbjct: 714  LRIMAHLSKDKGLVSAFSEGKDIHSATAAEVF-------------------DVP----LE 750

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                +ERR AK +NF + YG +  GL++   +S  +A++ +DL++     VLT+ E+ ++
Sbjct: 751  QVSVNERRSAKAINFGLIYGMSAFGLSKQLNISRYDAQQYMDLYFERYPGVLTYMESTRE 810

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             ++   +V T+ GR    P IK+    +R   ERAAIN P+QG+AAD+   AM+++
Sbjct: 811  GAKETGYVSTVFGRRLYLPDIKASNAMRRKGAERAAINAPMQGTAADIIKKAMIDV 866


>gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG]
 gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG]
          Length = 897

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/236 (39%), Positives = 130/236 (55%), Gaps = 24/236 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            NGRVH S N   T TGRLS+  PNLQN P    +  KIR+AFIA  G  ++ ADY Q+EL
Sbjct: 620  NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIEL 679

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K++L AF    D HS TA  +     + V + Q                  
Sbjct: 680  RIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQ------------------ 721

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RRKAK +NF + YG +  GLAR  ++   EA++ +D+++N    V  +    K+ 
Sbjct: 722  -----RRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEF 776

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            ++ + +V T+LGR    P I S    QRN  ERAAIN P+QG+AAD+   AM+ ++
Sbjct: 777  AKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADIIKKAMINVN 832



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 97/248 (39%), Gaps = 60/248 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L++  P F D    KV HN+ FD  VL  Y ++++G   DTM MA +  SS    G + 
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+                                K+  G   +     AG   T   
Sbjct: 427 MDSLS--------------------------------KEHLGIEPIAYTAIAG---TGKQ 451

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            + L + + E+   Y+A D+  T +L+    K LLE            K ++  Y E   
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNYF-KALLEQD----------KVLYKLYCELEM 500

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
           P   IL +ME  G+ +D   L         +Q A++    K     C +   +   + S 
Sbjct: 501 PLTIILNQMEKTGVKIDAAKL--------IQQSASLETSIKELESKCYNLAGQEFKLSSP 552

Query: 662 TQLRQLLF 669
            QLR++LF
Sbjct: 553 VQLREILF 560


>gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
 gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
          Length = 968

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 144/258 (55%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + +  ++GRVH   ++  T TGRLS+  PNLQN P   ++  +IR+AF+A PG+ L+ AD
Sbjct: 686  AQIDRRDGRVHTDFSMAVTSTGRLSSTEPNLQNIPIRTEEGVRIRRAFVAEPGHVLLAAD 745

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAHLA+  S+ DAF  G D HSRTA +++    + V+               
Sbjct: 746  YSQIELRLLAHLADVPSLRDAFAKGEDIHSRTAADIFGLAPDKVD--------------- 790

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                K+A    RR+AK +NF I YG +  GLA    +   EA+  +D ++++   +L   
Sbjct: 791  ----KEA----RRRAKTINFGIIYGMSAFGLAARLGIGPGEARGIIDAYFSQYPGILEEM 842

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K E+R   +V +  GR      I++  +++R + ERAAIN P QG AA++   AM+ 
Sbjct: 843  ERLKSEAREKGYVLSPFGRKLWIDGIQAKEQARRGNAERAAINAPFQGGAAEIIKRAMVR 902

Query: 1054 ISKNARLKELGWKLLLQV 1071
            +    R   L  ++LLQV
Sbjct: 903  MPAALRAAGLSARMLLQV 920


>gi|423203112|ref|ZP_17189690.1| DNA polymerase I [Aeromonas veronii AER39]
 gi|404613755|gb|EKB10774.1| DNA polymerase I [Aeromonas veronii AER39]
          Length = 921

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 154/307 (50%), Gaps = 33/307 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 596  KGAPSTAEEVLA---ELAETYELPQLLMEHRGLAKLKSTYTDKLPLM---IKPRTGRVHT 649

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 650  SYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 709

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++    +AV T                         R
Sbjct: 710  SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTTDM-----------------------R 746

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    +
Sbjct: 747  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAEAQGY 806

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 807  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDSWIRGIEDES 866

Query: 1065 WKLLLQV 1071
             ++L+QV
Sbjct: 867  IRMLMQV 873


>gi|395767572|ref|ZP_10448105.1| DNA polymerase I [Bartonella doshiae NCTC 12862]
 gi|395413935|gb|EJF80388.1| DNA polymerase I [Bartonella doshiae NCTC 12862]
          Length = 968

 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/258 (37%), Positives = 140/258 (54%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +  K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA  G+ L+ AD
Sbjct: 682  SYIFPKTGRVHTNYSLATTSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHLLLSAD 741

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+           V +E    D   
Sbjct: 742  YSQIELRILAHVADITALKEAFAQGQDIHAITASQMF----------GVAIEGMPSDI-- 789

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+AK +NF I YG +  GLA    +S +EA + + L++     +  + 
Sbjct: 790  -----------RRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQLYFERFPGIKDYM 838

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K  +R + +V T+ GR   +P IK+     R   ERAAIN P+QGSAAD+   AM++
Sbjct: 839  EETKDFARKNGYVETIFGRRIHYPEIKAANLQVRAFNERAAINAPIQGSAADIIRRAMIQ 898

Query: 1054 ISKNARLKELGWKLLLQV 1071
            +      ++L  K+LLQV
Sbjct: 899  MEDTLEKEKLSAKMLLQV 916



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 152/379 (40%), Gaps = 92/379 (24%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPE-ADFGNGKSCIWVDLLDGGGRDL----- 424
           A DTE   +D  Q       +++ FS+   PE A +         D L G GR +     
Sbjct: 382 AFDTETTSLDPLQ------AKLVGFSLALQPEKAAYVPLAHIEGGDDLLGSGRIVGQIEI 435

Query: 425 ---LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
              L    P  E+ ++ K+  N  +D  V++ Y + +  F  DTM ++   D+   T   
Sbjct: 436 EKALALLKPILENDAVLKIGQNIKYDWLVMKQYDIVIRSFD-DTMLLSYALDAGVLT--- 491

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
           +S++AL+                       E ++G   +S KD+    K        KI+
Sbjct: 492 HSMDALS-----------------------ERWLGHKPVSYKDLTHNGK--------KIT 520

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
           + A V+  Q         Y+A D+  TL+L++ LK +++             + M   Y+
Sbjct: 521 SFAQVDLKQA------TLYAAEDADITLRLWQVLKPQIV------------AQGMTRIYE 562

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P  E+L +ME  G+LVDR+ L       R   E A   F      +    +  N+ 
Sbjct: 563 RLDRPLIEVLARMEERGILVDRQIL------LRLSGELAQAAFILEEEIYQLAGERFNLA 616

Query: 660 SDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK---FRNIT 711
           S  QL  +LFG     G   +K    S   + +      E + AEG   P K   +R + 
Sbjct: 617 SPKQLGDILFGKMGLLGGAKTKGGQWSTSAQTL------EELAAEGHILPRKVIDWRQLA 670

Query: 712 -LRSIGVD-LPTEMYTATG 728
            L+S   D LP+ ++  TG
Sbjct: 671 KLKSTYADALPSYIFPKTG 689


>gi|378581671|ref|ZP_09830315.1| DNA polymerase I [Pantoea stewartii subsp. stewartii DC283]
 gi|377815585|gb|EHT98696.1| DNA polymerase I [Pantoea stewartii subsp. stewartii DC283]
          Length = 927

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/246 (39%), Positives = 134/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + V+G   RVH S +   T TGRLS+  PNLQN P    +  +IRQAF+A  GN 
Sbjct: 642  LPLMINPVTG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNR 698

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                  
Sbjct: 699  IVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATAAEVF------------------ 740

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 VPL K     +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 741  ----GVPLSK-VTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 795

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++ +  + +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+  
Sbjct: 796  VLRYMENTRQLAASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIK 855

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 856  RAMIAV 861



 Score = 48.5 bits (114), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 110/261 (42%), Gaps = 68/261 (26%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L +  P  EDP + KV  N  +D  VL+NY ++++G   DTM  + + +S     G + 
Sbjct: 399 VLAQLKPLLEDPDVSKVGQNLKYDRGVLKNYDIELAGIKYDTMLESYILNS---VVGKHD 455

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+   + ++     +++   KG     F  +I++                       
Sbjct: 456 MDSLSA--RWLNHKTVTFEEIAGKGKNQLTF-NQIAL----------------------- 489

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
                    E    Y+A D+  TL+L+       L+M  +L+ +  P K     +++   
Sbjct: 490 ---------EQAAHYAAEDADVTLQLH-------LKMWPELEKEAGPKK----VFEQIEM 529

Query: 604 PFGEILVKMETEGMLVDREYLSEIEK-----VARAEQEAAVNRFRKWASKHCPDAKYMNV 658
           P   ++ ++E  G+L+D+  L++  K     +A  E+EA           H    +  N+
Sbjct: 530 PLLRVISRIERNGVLIDQAILAQHSKELTARLAELEREA-----------HELAGEPFNL 578

Query: 659 GSDTQLRQLLF---GGKPNSK 676
            S  QL+ +LF   G KP  K
Sbjct: 579 SSTKQLQVILFEKQGIKPTKK 599


>gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp.
            novicida GA99-3549]
 gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
 gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549]
 gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
          Length = 897

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/236 (39%), Positives = 130/236 (55%), Gaps = 24/236 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            NGRVH S N   T TGRLS+  PNLQN P    +  KIR+AFIA  G  ++ ADY Q+EL
Sbjct: 620  NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIEL 679

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K++L AF    D HS TA  +     + V + Q                  
Sbjct: 680  RIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQ------------------ 721

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RRKAK +NF + YG +  GLAR  ++   EA++ +D+++N    V  +    K+ 
Sbjct: 722  -----RRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEF 776

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            ++ + +V T+LGR    P I S    QRN  ERAAIN P+QG+AAD+   AM+ ++
Sbjct: 777  AKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADIIKKAMINVN 832


>gi|423204492|ref|ZP_17191048.1| DNA polymerase I [Aeromonas veronii AMC34]
 gi|404626846|gb|EKB23654.1| DNA polymerase I [Aeromonas veronii AMC34]
          Length = 921

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 154/307 (50%), Gaps = 33/307 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 596  KGAPSTAEEVLA---ELAETYELPQLLMEHRGLAKLKSTYTDKLPLM---IKPRTGRVHT 649

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 650  SYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 709

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++    +AV T                         R
Sbjct: 710  SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTTDM-----------------------R 746

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    +
Sbjct: 747  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAEAQGY 806

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 807  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDSWIRGIEDES 866

Query: 1065 WKLLLQV 1071
             ++L+QV
Sbjct: 867  IRMLMQV 873


>gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
 gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
          Length = 945

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/247 (38%), Positives = 135/247 (54%), Gaps = 27/247 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ ++GRVH S +  N  TGRLS+  PNLQN P   ++  +IR AFIA  G  
Sbjct: 660  LPLM---VNAQSGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAQEGKK 716

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF  G D H  TA  ++      V+  +V  E   
Sbjct: 717  VLAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVF-----GVDFSEVTTE--- 768

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                           +RR+AK +NF + YG +  GLAR   +   EA+K +D +++    
Sbjct: 769  ---------------QRRRAKAVNFGLIYGMSAFGLARQLDIPRGEAQKYIDTYFDRYPG 813

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  + E+    +V TL GR    PAIK     +R   ERAAIN P+QG+AAD+  
Sbjct: 814  VLKYMEDTRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIK 873

Query: 1049 CAMLEIS 1055
             AM+ I+
Sbjct: 874  KAMINIA 880



 Score = 47.8 bits (112), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 144/363 (39%), Gaps = 87/363 (23%)

Query: 317 GQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEV 376
           G + ++S+N   E+ E++   + + Y  ++  +   A  K +  LT   K  + A DTE 
Sbjct: 322 GSSAQSSDNSADEE-EVVPQAIDAEYETILTHE---ALDKWIEQLT---KADLIAIDTET 374

Query: 377 AKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFF 432
             +D      V     I F++  G  A        +  D LD   +    + + +  P  
Sbjct: 375 TSLDYMTAKLVG----ISFAVEVGKAAYL-----PLAHDYLDAPEQLDFDEAIAKLKPLL 425

Query: 433 EDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRK 492
           EDP +KKV  N  +D  +  N G+K+ G   DTM  + +++S                  
Sbjct: 426 EDPKLKKVGQNLKYDISIFANVGIKLQGVAFDTMLESYVFNSVA---------------- 469

Query: 493 VMSEDKKAYQKDMSKGNTDE---GFMG--KISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
                        SK N D+    ++G   IS ++I G+   +   +   + T AP    
Sbjct: 470 -------------SKHNMDDLALKYLGHKNISFEEIAGKGAKQLTFNQIDLETAAP---- 512

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFG 606
                     Y+A D+  TL+L++ L        W +L+ +P     +   + +   P  
Sbjct: 513 ----------YAAEDADITLRLHQHL--------WARLEKEP----KLASVFTDIELPLV 550

Query: 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQ 666
           ++L K+E +G+L+D   L +        QE A++  +          +  N+ S  QL+ 
Sbjct: 551 QVLSKIERQGVLIDSMMLGQ------QSQEIAISIDKLEQDAFEIAGETFNLSSPKQLQA 604

Query: 667 LLF 669
           L F
Sbjct: 605 LFF 607


>gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
 gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
          Length = 884

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 156/294 (53%), Gaps = 32/294 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCSLNIN-TETGRLS 838
            A D +  L     I  LI  +  +  L  + V G      ++G++H     N T+TGRLS
Sbjct: 565  AVDVLEKLAHQAPIVELILEYRQLAKLNSTYVEGLQAYIQEDGKIHTRFIQNLTQTGRLS 624

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P   K+  +IR AF+    +  ++ +DY Q+ELR+LAH+A  K M++AFK 
Sbjct: 625  SVDPNLQNIPIRTKEGRRIRYAFLPEHDDWKILSSDYSQIELRVLAHIAGDKHMIEAFKN 684

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
              D H+ TAM ++                 G   P      D  +  RR+AK +NF I Y
Sbjct: 685  NVDIHTNTAMRVF-----------------GISNP-----DDVTSEMRRQAKAVNFGIVY 722

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + AK+ +D +  E Q V  + E+  KE+R  ++V TL  R R  P
Sbjct: 723  GISDYGLSQNLNISRKRAKEFIDRYLEEFQGVKDFMESIVKEAREKDYVETLFHRRRYLP 782

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             I S   + R+  ER A+N+P+QGSAAD+   AM+E+ +  R ++    LLLQV
Sbjct: 783  DIHSSNFNLRSFAERTAMNSPIQGSAADILKMAMIELDREMRERKFKANLLLQV 836


>gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella novicida U112]
 gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella novicida FTE]
 gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112]
 gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
          Length = 897

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/236 (39%), Positives = 130/236 (55%), Gaps = 24/236 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            NGRVH S N   T TGRLS+  PNLQN P    +  KIR+AFIA  G  ++ ADY Q+EL
Sbjct: 620  NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIEL 679

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K++L AF    D HS TA  +     + V + Q                  
Sbjct: 680  RIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQ------------------ 721

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RRKAK +NF + YG +  GLAR  ++   EA++ +D+++N    V  +    K+ 
Sbjct: 722  -----RRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEF 776

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            ++ + +V T+LGR    P I S    QRN  ERAAIN P+QG+AAD+   AM+ ++
Sbjct: 777  AKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADIIKKAMINVN 832


>gi|359687343|ref|ZP_09257344.1| DNA polymerase I [Leptospira licerasiae serovar Varillal str.
            MMD0835]
 gi|418751263|ref|ZP_13307549.1| DNA-directed DNA polymerase [Leptospira licerasiae str. MMD4847]
 gi|418756194|ref|ZP_13312382.1| 5'-3' exonuclease, N-terminal resolvase-like domain / 5'-3'
            exonuclease, SAM domain / 3'-5' exonuclease /
            DNA-directed DNA polymerase multi-domain protein
            [Leptospira licerasiae serovar Varillal str. VAR 010]
 gi|384115865|gb|EIE02122.1| 5'-3' exonuclease, N-terminal resolvase-like domain / 5'-3'
            exonuclease, SAM domain / 3'-5' exonuclease /
            DNA-directed DNA polymerase multi-domain protein
            [Leptospira licerasiae serovar Varillal str. VAR 010]
 gi|404273866|gb|EJZ41186.1| DNA-directed DNA polymerase [Leptospira licerasiae str. MMD4847]
          Length = 920

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/299 (35%), Positives = 156/299 (52%), Gaps = 30/299 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            ++T+ E  E        I  L +      LIS ++  L  S  S K+GR+H S N+    
Sbjct: 598  YSTDHEVLEELLGEHPIIEKLLDYRKYTKLISTYVDTLP-SMASPKDGRIHTSYNMTIAA 656

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSML 892
            TGRLS+  PNLQN P  EK+   IR+ FI+   +  I++ DY Q+ELRI+AH++   +M+
Sbjct: 657  TGRLSSTDPNLQNIPIREKEGRLIRKGFISGHKDFEILSLDYSQIELRIMAHISKDPAMM 716

Query: 893  DAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLN 952
            DA+K G D H RTA  +Y    + V                 P ++D       KAK++N
Sbjct: 717  DAYKKGIDIHKRTAAAIYGVAEDKV----------------TPEMRD-------KAKVVN 753

Query: 953  FSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGR 1012
            FS+ YG TP GL+R+ ++S EEAK  +D +  +   V  + +          +V T+ GR
Sbjct: 754  FSVIYGVTPYGLSRNLRISREEAKNFIDRYLTQYPGVQKYMDDMIAFCEEKGYVETMKGR 813

Query: 1013 ARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             R  P I S  R  +   +R AINTP+QG+ AD+   AM++I      ++   KLLLQV
Sbjct: 814  RRPVPDITSTHRQAKEGAKRVAINTPIQGTCADMIKIAMIQIQDEIEKRKWKSKLLLQV 872



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 154/377 (40%), Gaps = 91/377 (24%)

Query: 301 KRSNQKNPKNDAAEGTGQNKKASENENS-----EKLEILRSKLASFY--SNVMVVDNVSA 353
           K   ++ PK++  EG   + KAS  +       E +E L +KLA  +  S ++ VD  + 
Sbjct: 290 KSVGKEPPKDEPEEGPAGSAKASNAKKGIYKRVESVEEL-TKLARAWKKSPILSVDTETT 348

Query: 354 AKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIW 413
           ++              +A D E+  I +  +     G      +    E  F N    + 
Sbjct: 349 SQ--------------YAFDAELLGISLCNQ----EGTGFYIPVTHNQEGLFTNKDQLLP 390

Query: 414 VDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMAR-LW 472
           +D +    R++L    P   DP+I KV  N  +D  VL+N+G +++    DTM +A  L 
Sbjct: 391 LDQV----REIL---GPVLADPNIPKVGQNIKYDLIVLQNHGFEIANIVFDTMIVAYILA 443

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKD 532
             SRR    ++++ L       +ED   Y+               I+  ++ G  K KK+
Sbjct: 444 PESRR----FNMDDL-------AEDLLNYKT--------------ITYAELVGTGKNKKN 478

Query: 533 GSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGK 592
               ++  +A               Y+A D+  TL+LY  L+K L +             
Sbjct: 479 LWEVELDKVA--------------EYAAEDADITLRLYNVLRKSLKQ------------S 512

Query: 593 SMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD 652
            +   ++E   P   +L +ME  G+ VD +Y +E+ K  + E +       + A K    
Sbjct: 513 GLESVFKEIDLPLIPVLTQMEKAGIAVDAKYFAELSKDFQREVKDLEKGIYRAAGKE--- 569

Query: 653 AKYMNVGSDTQLRQLLF 669
               N+ S  +L+++LF
Sbjct: 570 ---FNIASTKELQKILF 583


>gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
 gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
          Length = 1060

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/278 (37%), Positives = 147/278 (52%), Gaps = 25/278 (8%)

Query: 795  LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKD 853
            + E   +  L S +   LQ ++   +  RVH S ++  T TGRLS+  PNLQN P   ++
Sbjct: 755  ILEWRQLSKLKSTYTDALQ-AHADRETARVHTSFSLAATTTGRLSSSEPNLQNIPIRTEE 813

Query: 854  RYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHI 913
              +IR+AF+A PGN LI ADY Q+ELR+LAH+A+   +  AF+ G D H+ TA  M+   
Sbjct: 814  GRRIRRAFVAAPGNRLISADYSQIELRLLAHMADIPELRKAFEDGIDIHAATASAMFG-- 871

Query: 914  RNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVE 973
                                VPL K+     RR+AK +NF I YG +  GLA    +  E
Sbjct: 872  --------------------VPL-KEMTPDLRRRAKTINFGIIYGISAFGLADRLGIGRE 910

Query: 974  EAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERA 1033
            EA   +  ++ +   +  + E  KK  R   +V TL GR   +P I+S   S+R  +ER 
Sbjct: 911  EASAFIKQYFEQFPGIRDYIETTKKSCRDKGYVTTLFGRVCHYPQIRSNNPSERASVERQ 970

Query: 1034 AINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AIN P+QGSAAD+   AM  +      K+L  ++LLQV
Sbjct: 971  AINAPIQGSAADIIRRAMTRMEAALAAKKLNARMLLQV 1008


>gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
 gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
          Length = 919

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/252 (37%), Positives = 137/252 (54%), Gaps = 24/252 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GR+H S +   T TGRLS+  PNLQN P   ++  +IRQAF+A  G+ L+ ADY Q+EL
Sbjct: 643  TGRIHTSYHQAVTATGRLSSTDPNLQNIPIRTQEGRRIRQAFVAPEGHKLVAADYSQIEL 702

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K +LDAF    D H  TA  ++     AV+                    D
Sbjct: 703  RIMAHLSQDKGLLDAFAHDEDVHKATAAEVF---EVAVD--------------------D 739

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
              A +RR+AK +NF + YG +  GLA+   +S  EA+K V  ++     V T+ E  ++ 
Sbjct: 740  VTAEQRRRAKAINFGLIYGMSAFGLAKQLGISRPEAQKYVQRYFERYPGVRTYMETTREN 799

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            ++   +V T+ GR    P IK+     R   ER AIN P+QGSAAD+   AM+++     
Sbjct: 800  AKEKGYVETIFGRRLYLPEIKARNAMMRQAAERTAINAPMQGSAADIIKRAMIKMHNWLA 859

Query: 1060 LKELGWKLLLQV 1071
              +LG K+++QV
Sbjct: 860  DTDLGVKMIMQV 871


>gi|119946792|ref|YP_944472.1| multifunctional 5'-3' exonuclease/3'-5' polymerase/3'-5' exonuclease
            [Psychromonas ingrahamii 37]
 gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
            3'->5' exonuclease [Psychromonas ingrahamii 37]
          Length = 938

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/265 (37%), Positives = 140/265 (52%), Gaps = 25/265 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ K GR+H S     T TGRLS+  PNLQN P    +  +IRQAFIA PG  ++ ADY 
Sbjct: 657  VNEKTGRLHTSYQQAVTVTGRLSSTDPNLQNIPIRSAEGRRIRQAFIAQPGYKIVAADYS 716

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                       VP
Sbjct: 717  QIELRIMAHLSQDKGLLDAFSTGKDIHKATASEVF----------------------SVP 754

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             L +    +RR AK +NF + YG +  GLA+   +   EA+  +D ++N    VL + E 
Sbjct: 755  -LDEVTTEQRRSAKAINFGLIYGMSAFGLAKQLNIGRHEAQLYMDKYFNRYPGVLIYMED 813

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  +    +V T+LGR  + P IKS     +   ERAAIN P+QG+AAD+   AM++++
Sbjct: 814  TRSLANEKAYVETILGRRLQLPNIKSRNGMLKKAAERAAINAPMQGTAADIIKKAMIDMA 873

Query: 1056 KNARLKELG-WKLLLQVLFFFSFSF 1079
                 K  G  ++L+QV     FS 
Sbjct: 874  DWIAQKSPGSVQMLMQVHDELVFSI 898


>gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
 gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
          Length = 942

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/256 (37%), Positives = 142/256 (55%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGRVH S +   T TGRLS+R PNLQN P  ++   +IR+AF A  G +LI ADY 
Sbjct: 662  LADKNGRVHTSFIQTGTATGRLSSRDPNLQNIPIRDEAGRRIRKAFQAEKGKNLISADYA 721

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  K+++ AF+ G D H+ TA  ++      +  G+VL +          
Sbjct: 722  QIELVILAHLSQDKNLVQAFQEGTDVHAATAALIF-----GMPIGEVLPDM--------- 767

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR AK +NF + YG +   L+   ++   +A   ++ ++     V  + E 
Sbjct: 768  ---------RRIAKTINFGVMYGMSAFRLSNALRIPRRQAADFIETYFKTYSGVHIFMEE 818

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K+ +R   +V TL+GR R   AI S  + ++   ER AINTP+QGSAAD+   AML++ 
Sbjct: 819  LKESARRKGYVETLMGRRRYIYAINSANKLEQAGAERVAINTPIQGSAADIVKTAMLKVQ 878

Query: 1056 KNARLKELGWKLLLQV 1071
               +  +L  KLLLQV
Sbjct: 879  NALQAHKLQAKLLLQV 894


>gi|347732571|ref|ZP_08865648.1| DNA polymerase I, thermostable [Desulfovibrio sp. A2]
 gi|347518684|gb|EGY25852.1| DNA polymerase I, thermostable [Desulfovibrio sp. A2]
          Length = 872

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 149/281 (53%), Gaps = 26/281 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            + A+ E   ++ L S ++ PL    +    GR+H + N + T TGRLS+  PNLQN P  
Sbjct: 565  VDAILEFRKLEKLRSTYLEPL--PRLVDDAGRIHTTFNQLATATGRLSSSNPNLQNIPVR 622

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
                 ++R  F A PG  L+ ADY Q+ELR+LAH++   ++L AF+ G D HSRTA  +Y
Sbjct: 623  GDLGRRMRTCFTAAPGLRLVSADYSQVELRVLAHMSQDPTLLAAFREGADIHSRTASLLY 682

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
               ++ V T Q                       RR AK +NF + YG  P  LA++ ++
Sbjct: 683  DVAQDQVSTDQ-----------------------RRNAKTINFGLIYGMGPQKLAQELRI 719

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
             + EAK  ++ ++++ Q++  + +  +  +R   +V T+ GR R  P I S     ++  
Sbjct: 720  PLTEAKAFIERYFSKLQKLRAFYDEAETTARELGYVTTMAGRRRLLPEIHSENTQLKSQA 779

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             R AINT +QGSAAD+   AML    +  L+ L  +L+LQV
Sbjct: 780  RRQAINTLIQGSAADIIKLAMLAAHADPDLRALNARLILQV 820


>gi|385831716|ref|YP_005869529.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56]
 gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56]
          Length = 877

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 157/293 (53%), Gaps = 31/293 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 559  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 619  SVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHG 678

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TAM ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 679  ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 717  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQV
Sbjct: 777  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQV 829


>gi|374674227|dbj|BAL52118.1| DNA polymerase I [Lactococcus lactis subsp. lactis IO-1]
          Length = 884

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 157/293 (53%), Gaps = 31/293 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 566  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 625

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 626  SVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHG 685

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TAM ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 686  ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 723

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 724  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 783

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQV
Sbjct: 784  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQV 836


>gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
 gi|418363147|ref|ZP_12963742.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida 01-B526]
 gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
 gi|356685587|gb|EHI50229.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida 01-B526]
          Length = 918

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 155/307 (50%), Gaps = 33/307 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E  ++  L S +   LPL    +  + GRVH 
Sbjct: 593  KGAPSTAEEVLA---ELAETYELPRLLMEHRTLAKLKSTYTDKLPLM---IKPQTGRVHT 646

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 647  SYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 706

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++    +AV T                         R
Sbjct: 707  SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTTDM-----------------------R 743

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    +
Sbjct: 744  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAEAQGY 803

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 804  VETLFGRRLYLPDIKSRNAGLRKGAERAAINAPMQGTAADIIKRAMINVDGWIRGIEDES 863

Query: 1065 WKLLLQV 1071
             ++L+QV
Sbjct: 864  IRMLMQV 870


>gi|418037832|ref|ZP_12676194.1| DNA-directed DNA polymerase [Lactococcus lactis subsp. cremoris CNCM
            I-1631]
 gi|354694041|gb|EHE93743.1| DNA-directed DNA polymerase [Lactococcus lactis subsp. cremoris CNCM
            I-1631]
          Length = 884

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 157/293 (53%), Gaps = 31/293 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 566  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 625

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 626  SVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHG 685

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TAM ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 686  ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 723

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 724  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 783

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQV
Sbjct: 784  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQV 836


>gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
 gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
          Length = 920

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 150/299 (50%), Gaps = 25/299 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            Q+ R   + +  + +   +  L+  ++  L    ++ + GR+H S N   T TGRLS+  
Sbjct: 607  QQLRGKHEIVGDILDYRGLKKLLGTYVDALP-KLINTRTGRIHTSFNQTVTATGRLSSSE 665

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P   +D  +IR+AFI   G     ADY Q+ELR++AHL+    M++AF+ G D 
Sbjct: 666  PNLQNIPVRGEDGKEIRKAFIPEEGCLFFSADYSQIELRVMAHLSGDAHMIEAFREGYDI 725

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA  +Y     AVE                    D    ER KAK  NF I YG T 
Sbjct: 726  HAATAAKIYG---RAVE--------------------DVTRDERTKAKRANFGIIYGITV 762

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA    +   EAK+ +D ++    +V  + E  K+ +R   +V T+  R R  P I S
Sbjct: 763  FGLAERLDIDRNEAKQLIDGYFMMFPQVKDYMEHSKEVARTHGYVETIFHRRRYLPDINS 822

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSFF 1080
               + R   ER AIN P+QGSAAD+   AM+ I +    + +  K++LQV    +FS F
Sbjct: 823  HNATVRGFAERNAINAPIQGSAADIIKVAMIRIYRRFMKEGIRSKMILQVHDELNFSVF 881


>gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
 gi|18202780|sp|Q9CDS1.1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I
 gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
          Length = 877

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 157/293 (53%), Gaps = 31/293 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 559  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 619  SVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHG 678

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TAM ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 679  ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 717  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQV
Sbjct: 777  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQV 829


>gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 872

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 149/281 (53%), Gaps = 26/281 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            + A+ E   ++ L S ++ PL    +    GR+H + N + T TGRLS+  PNLQN P  
Sbjct: 565  VDAILEFRKLEKLRSTYLEPL--PRLVDGAGRIHTTFNQLATATGRLSSSNPNLQNIPVR 622

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
                 ++R  F A PG  L+ ADY Q+ELR+LAH++   ++L AF+ G D HSRTA  +Y
Sbjct: 623  GDLGRRMRTCFTAAPGLRLVSADYSQVELRVLAHMSQDPTLLAAFREGADIHSRTASLLY 682

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
               ++ V T Q                       RR AK +NF + YG  P  LA++ ++
Sbjct: 683  DVAQDQVSTDQ-----------------------RRNAKTINFGLIYGMGPQKLAQELRI 719

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
             + EAK  ++ ++++ Q++  + +  +  +R   +V T+ GR R  P I S     ++  
Sbjct: 720  PLTEAKAFIERYFSKLQKLREFYDEAETTARELGYVTTMAGRRRLLPEIHSENTQLKSQA 779

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             R AINT +QGSAAD+   AML    +  L+ L  +L+LQV
Sbjct: 780  RRQAINTLIQGSAADIIKLAMLAAHADPELRALNARLILQV 820


>gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
 gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
          Length = 880

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/292 (34%), Positives = 160/292 (54%), Gaps = 29/292 (9%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            ++ R+  + I+ + E  S+  L S ++  ++   V+ K+GR+H S N   T TGR+S+  
Sbjct: 567  EKLRDKHEIINMITEYRSVVKLKSTYVDGIEAL-VNAKDGRIHSSFNQTITTTGRISSTD 625

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PN+QN P       +IR+ FIA    SL+ ADY Q+ELR+LAH++    M++AF +G D 
Sbjct: 626  PNMQNIPVRTDMGRQIRKVFIAGDSMSLVDADYSQVELRVLAHMSQDPHMIEAFNSGEDI 685

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H +TA  ++      V+  QV  E                   R  AK +NF I YGK+ 
Sbjct: 686  HRKTASQVFN-----VDFNQVTPEL------------------RSAAKAVNFGIIYGKSD 722

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA+D  +S ++AK+ ++ ++N+ + +  + +    E+    +  T+  R R  P IKS
Sbjct: 723  FGLAQDLNISQKKAKEYIESYFNKYETIKAFMDHIVSEAEEKGYSTTIFNRRRYIPEIKS 782

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
                ++N  +RAA+N P+QGSAAD+   AM+ +    RLKE G K  L+LQV
Sbjct: 783  SNFVEKNRGKRAAMNAPIQGSAADIIKIAMVNVYN--RLKEKGLKSRLILQV 832


>gi|338740726|ref|YP_004677688.1| DNA polymerase I [Hyphomicrobium sp. MC1]
 gi|337761289|emb|CCB67122.1| DNA polymerase I [Hyphomicrobium sp. MC1]
          Length = 993

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/299 (35%), Positives = 153/299 (51%), Gaps = 29/299 (9%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GR+H S  + +T TGRL++  PNLQN P   K+  +IR AFIA  G  L+ ADY 
Sbjct: 708  INPETGRIHTSYALASTTTGRLASSEPNLQNIPIRNKEGREIRTAFIAEKGMKLVSADYS 767

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 768  QIELRVLAHVADIPQLKKAFADGLDIHAMTASEMFG----------------------VP 805

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            + KD  A  RR+AK +NF I YG +  GLA    +S EEA   +  ++     +  + +A
Sbjct: 806  V-KDMPAEVRRRAKAINFGIIYGISAFGLANQLSISREEAGDYIKTYFQRFPGIRDYMDA 864

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             KK++    HV T+ GR   +P I +   S R  +ERAAIN P+QGSAAD+   AM+ + 
Sbjct: 865  TKKQAHAHGHVETIFGRRIHYPEINTKNPSMRGFLERAAINAPIQGSAADIIRRAMIRMP 924

Query: 1056 KNARLKEL-GWKLLLQV---LFFFSFSFFSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
                   L   ++LLQV   L F      +  +I++ +  V+  A  P    S  +H D
Sbjct: 925  DALVAANLSSARMLLQVHDELVFEVPQDQADALIITARH-VMETAAEPAIKLSVPIHVD 982



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 138/343 (40%), Gaps = 103/343 (30%)

Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
           W+   +   LV A DTE +++   +       +++ FS+   P      G++C       
Sbjct: 385 WIAKAQSAGLV-AFDTETSRLSATE------ADLVGFSLSVTP------GEACYVPVGHQ 431

Query: 419 GGGRDLLNE---------------FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHA 463
            GG DL  +                 P  EDPS+ K+  N  +D  VL+ YG++V+ F  
Sbjct: 432 SGGGDLFGDGNRPPQLAVAEAVALMKPLLEDPSVLKIGQNIKYDVLVLKRYGVEVAPFD- 490

Query: 464 DTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDI 523
           DT+ ++   D  R   G + ++ L+ +R +              G+T   F   I     
Sbjct: 491 DTLLLSYALDGGR---GQHGMDVLS-ERHL--------------GHTCLSFSEVIEHAP- 531

Query: 524 FGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWK 583
            G +K  K  +        P+++           Y+A D+  TL+L+ +LK +L      
Sbjct: 532 -GAKKADKSFAG------VPIDK--------ATEYAAEDADITLRLWMALKPRL------ 570

Query: 584 LDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEA- 637
                   + M   Y+   +P   ++V ME  G+ VDR+ L+ +     ++  + E+E  
Sbjct: 571 ------AAEHMATVYETLERPLVPVIVAMEHAGIKVDRDILARLSSTFAQRTVQLEEEIY 624

Query: 638 --AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF------GGK 672
             A ++F              N+GS  QL +LLF      GGK
Sbjct: 625 GLAGHKF--------------NLGSPKQLGELLFDRLKLPGGK 653


>gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565]
 gi|423211776|ref|ZP_17198309.1| DNA polymerase I [Aeromonas veronii AER397]
 gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565]
 gi|404612997|gb|EKB10041.1| DNA polymerase I [Aeromonas veronii AER397]
          Length = 921

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 154/307 (50%), Gaps = 33/307 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 596  KGAPSTAEEVLA---ELAETYELPQLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 649

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 650  SYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 709

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++    +AV T                         R
Sbjct: 710  SGDKGLLTAFAEGKDIHKATAAEVFGVAIDAVTTDM-----------------------R 746

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    +
Sbjct: 747  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAEAQGY 806

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 807  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDSWIRGIEDES 866

Query: 1065 WKLLLQV 1071
             ++L+QV
Sbjct: 867  IRMLMQV 873


>gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
 gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
          Length = 877

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 157/293 (53%), Gaps = 31/293 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 559  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 619  SVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHG 678

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TAM ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 679  ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 717  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQV
Sbjct: 777  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQV 829


>gi|333997453|ref|YP_004530065.1| DNA-directed DNA polymerase [Treponema primitia ZAS-2]
 gi|333740823|gb|AEF86313.1| DNA-directed DNA polymerase [Treponema primitia ZAS-2]
          Length = 1003

 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/257 (35%), Positives = 142/257 (55%), Gaps = 24/257 (9%)

Query: 816  NVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
            +++ + GR+H + +   T TGRLS+R PNLQN P  +++  +IR+AFIA PGN LI ADY
Sbjct: 722  DLADREGRLHTNFVQTGTATGRLSSREPNLQNIPIRDEEGRRIREAFIAKPGNVLISADY 781

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+EL +LAHL+  +++L AF  G D H+RTA  ++                 G  +   
Sbjct: 782  SQIELVVLAHLSQDENLLAAFNEGKDVHARTAALIF-----------------GVSE--- 821

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               KD    +RR AK +NF + YG +   LAR+  ++  +A   ++ ++     +    E
Sbjct: 822  ---KDVHPDQRRMAKTINFGVMYGMSAFRLARELNITRTDAANFIEAYFKTYAGIRRLIE 878

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
                 +    +  T+LGR R  PAI S  ++++   ER A+NTP+QGSAAD+   AML +
Sbjct: 879  ELITNTEQTGYASTILGRRRYIPAINSRNKTEKAGAERVAVNTPIQGSAADIVKTAMLHL 938

Query: 1055 SKNARLKELGWKLLLQV 1071
             +    ++   KLLLQV
Sbjct: 939  DERLTKEKSPAKLLLQV 955


>gi|440758546|ref|ZP_20937710.1| DNA polymerase I [Pantoea agglomerans 299R]
 gi|436427720|gb|ELP25393.1| DNA polymerase I [Pantoea agglomerans 299R]
          Length = 928

 Score =  160 bits (406), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/248 (39%), Positives = 136/248 (54%), Gaps = 27/248 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + +SG   RVH S +   T TGRLS+  PNLQN P    +  +IRQAF+A  G+ 
Sbjct: 643  LPLMINPISG---RVHTSYHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFVAAKGHR 699

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++         G  L +  G
Sbjct: 700  IVAADYSQIELRIMAHLSQDKGLLDAFAQGDDIHRATASEVF---------GVALDKVSG 750

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 751  E--------------QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 796

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++ +  + +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+  
Sbjct: 797  VLRYMENTRQLAASNGYVETLEGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIK 856

Query: 1049 CAMLEISK 1056
             AM+ + +
Sbjct: 857  RAMIAVDE 864


>gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3]
          Length = 925

 Score =  160 bits (406), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/269 (37%), Positives = 143/269 (53%), Gaps = 34/269 (12%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA
Sbjct: 637  LPSYILP--------KTGRVHTNYSLATTSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIA 688

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G  L+ ADY Q+ELR+LAH A+  ++ +AF  G D H+ TA  M+     AVE     
Sbjct: 689  SKGYLLLSADYSQIELRVLAHFADITALKEAFAQGQDIHAMTAAQMFG---VAVE----- 740

Query: 924  LEWHGEDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLW 982
                              +SE RR+AK +NF I YG +P GLA    +S +EA   + L+
Sbjct: 741  ----------------GMSSEIRRRAKAINFGIIYGISPFGLANQLGISRKEASHYIQLY 784

Query: 983  YNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGS 1042
            +     +  + E  K  +R   +V T+ GR    P IK++    R   ERAAIN P+QGS
Sbjct: 785  FERFPGIKDYMEKTKMFARHHGYVETIFGRRIHCPEIKAVNPQVRAFNERAAINAPIQGS 844

Query: 1043 AADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AAD+   AM+++      ++L  K+LLQV
Sbjct: 845  AADIIRRAMIQMENALEKEKLSAKMLLQV 873



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 160/392 (40%), Gaps = 95/392 (24%)

Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGP------EADFGNGKSCI 412
           W+L  K +    + DTE   +D  Q       ++I FS+   P        +   G+  +
Sbjct: 328 WLLEAKEQG-YFSFDTETTSLDPMQ------AKLIGFSLALQPGKAAYIPLEHVAGEDDL 380

Query: 413 WVD---LLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMA 469
           W D   +     +  L    P  E+ +I K+  N  +D  V++ Y + +  F  DTM ++
Sbjct: 381 WGDRRIVQQIETQKALALLKPILENQAILKIGQNIKYDWLVMKQYNIVMRSFD-DTMLLS 439

Query: 470 RLWDSSRRTEGGYSLEA--LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527
                       Y+LEA   T    ++SE    ++               I+ KD     
Sbjct: 440 ------------YALEAGISTHGMDILSERWLGHKS--------------ITYKD----- 468

Query: 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGK 587
            L  +G   K+++ A ++  Q         Y+A D+  TL+L++ LK +L+         
Sbjct: 469 -LTYNGR--KVNSFAQIDLKQAT------LYAAEDADITLRLWQVLKPQLV--------- 510

Query: 588 PVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIE-KVARAEQEAAVNRFRKWA 646
               + M   Y+   +P  EIL +ME  G+LVDR+ LS +  ++A+A        ++   
Sbjct: 511 ---AQRMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQLVG 567

Query: 647 SKHCPDAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGK 701
            K        N+ S  QL  +LFG     G   +K+   S   + +      E + AEG 
Sbjct: 568 EK-------FNIASPKQLGDILFGKIGLPGGSKTKNGQWSTSAQTL------EELAAEGH 614

Query: 702 KTPSK---FRNIT-LRSIGVD-LPTEMYTATG 728
             P K   +R +T L+S   D LP+ +   TG
Sbjct: 615 ILPRKIVNWRQLTKLKSTYTDALPSYILPKTG 646


>gi|387132501|ref|YP_006298473.1| DNA-directed DNA polymerase [Prevotella intermedia 17]
 gi|386375349|gb|AFJ08547.1| DNA-directed DNA polymerase [Prevotella intermedia 17]
          Length = 920

 Score =  160 bits (406), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/290 (35%), Positives = 150/290 (51%), Gaps = 25/290 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            +  + E   I  L+S +I  L    +  + G +H S N   T TGRLS+  PNLQN P  
Sbjct: 616  VHKILEYRGIKKLLSTYIDALPKL-IKPETGHIHTSFNQALTATGRLSSSDPNLQNIPVR 674

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
              D  +IR+ FI  PG     ADY Q+ELRI+AHL+  ++M++AF+ G D H  TA  + 
Sbjct: 675  TDDGKEIRKCFIPEPGCEFFSADYSQIELRIMAHLSKDENMMEAFRKGFDIHRATAAKI- 733

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                           WH ED      +++   ++R+KAK  NF I YG T  GLA+   +
Sbjct: 734  ---------------WH-ED------MENVTDTQRKKAKQANFGIIYGITTYGLAQRMDI 771

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
               EAK+ +D ++N   +V  + E  K+E+R   +  T+  R R    I S   + R   
Sbjct: 772  PNGEAKELIDGYFNTFPKVKAYMERAKEEARQKGYAETIFHRRRYLADINSRNATVRGFA 831

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSFF 1080
            ER AIN P+QGS AD+   AM+ I +  + + +  K++LQV    +FS F
Sbjct: 832  ERNAINAPIQGSEADIIKVAMVRIWQRFKRENIRSKMILQVHDELNFSVF 881



 Score = 42.7 bits (99), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 84/251 (33%), Gaps = 64/251 (25%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++N F P +ED  I K+  N  +D  VL  YG+ + G   DTM    L     R    Y 
Sbjct: 393 IVNIFKPLYEDEKILKIGQNIKYDYEVLHKYGVTLKGKLFDTMIAHYLIQPELRHNMDYM 452

Query: 484 LEALTGDRKVMSED----KKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKIS 539
            E L   + +  E     K  +QK+M      E +                         
Sbjct: 453 AETLLNYKTIPIESLIGAKGKHQKNMRDLQPSEIY------------------------- 487

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
                             Y+  D+  TL+L   L+ KL E+  +            D + 
Sbjct: 488 -----------------EYACEDADITLQLKHVLEPKLKEVEAE------------DLFW 518

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
               P   +L  ME  G+ +D   L E  ++             ++A +        N+ 
Sbjct: 519 NIEMPLVPVLADMELHGVRLDTAALEETSRIFTERMNQYEQEIYEFAGES------FNIS 572

Query: 660 SDTQLRQLLFG 670
           S  Q+ ++LFG
Sbjct: 573 SPKQVGEMLFG 583


>gi|386289429|ref|ZP_10066559.1| DNA polymerase I [gamma proteobacterium BDW918]
 gi|385277492|gb|EIF41474.1| DNA polymerase I [gamma proteobacterium BDW918]
          Length = 894

 Score =  160 bits (406), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 139/263 (52%), Gaps = 27/263 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPLQ   +  K GR+H S +     TGRLS+  PNLQN P    +  +IRQAFIA PG  
Sbjct: 610  LPLQ---IDPKTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRSAEGRRIRQAFIAPPGYV 666

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  + ++DAF  G D H  TA  ++      V T +V  E   
Sbjct: 667  ILAADYSQIELRIMAHLSGDRGLVDAFSRGEDIHRATAAEVF-----GVSTDEVSDE--- 718

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                           +RR AK +NF + YG +  GLAR   +  +EA++ +DL++     
Sbjct: 719  ---------------QRRNAKAINFGLIYGMSAFGLARQLHLGRKEAQQYIDLYFERYPG 763

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + +  +  +    +V TL GR    P I +    +R   ER AIN P+QG+AAD+  
Sbjct: 764  VLRYMDETRVSASEKGYVETLFGRRLHLPEINARNGMRRQAAERTAINAPMQGTAADIIK 823

Query: 1049 CAMLEISKNARLKELGWKLLLQV 1071
             AM+ + K      +  K+++QV
Sbjct: 824  RAMIAVDKYLSGSSVDAKMIMQV 846



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 104/259 (40%), Gaps = 56/259 (21%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV-DLLDGGGRDLLNE 427
           + A DTE   ++  Q   V     + F++ +G  A    G   + V D LD     +L +
Sbjct: 317 IFAFDTETTSLNYMQARIVG----VSFAVKAGEAAYLPFGHDYLDVPDQLDEA--HVLAQ 370

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
             P  EDP + KV  N  +D +VL N+G+ + G H DTM  + + DS             
Sbjct: 371 LKPLLEDPELYKVGQNLKYDANVLLNHGIALRGIHDDTMLASYVLDS------------- 417

Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
           TG R  M      Y  D S  +  E   GK + +  F +  L++ G              
Sbjct: 418 TGSRHDMDTLALKYL-DHSTIHF-EDIAGKGAKQITFNQIALEQAG-------------- 461

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
                     Y+A D+  TL+LY++L  K+ +            + +   Y+    P   
Sbjct: 462 ---------PYAAEDADITLRLYQALLPKIQQH-----------EGLLAVYRNIELPLVP 501

Query: 608 ILVKMETEGMLVDREYLSE 626
           +L ++E  G  VDRE L +
Sbjct: 502 VLSRIERNGAYVDRELLGK 520


>gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis sp. HTCC2633]
 gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
          Length = 924

 Score =  160 bits (406), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 139/256 (54%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++   GRVH S ++  T TGRLS+  PNLQN P   ++  KIR+AF A PG+ ++ ADY 
Sbjct: 640  INPNTGRVHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRKIREAFTAEPGHVIVAADYS 699

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+ +++  AF+ G D H+ TA  M+                       VP
Sbjct: 700  QIELRLLAHIADVEALKQAFREGQDIHALTASEMF----------------------GVP 737

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             L++   + RR AK +NF I YG +  GLA +  +  +EAK  +D ++ +   +  + +A
Sbjct: 738  -LENMDPTTRRNAKAINFGIIYGISAFGLANNLGIGRDEAKSYIDSYFKKFPGIKDYMDA 796

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K E++    V T+ GR    P IK    S R   ER AIN P+QG+AAD+   AM+ + 
Sbjct: 797  MKDEAKAKGCVSTIFGRRIHLPGIKDKNPSVRQFTERQAINAPIQGAAADIIRRAMVRMP 856

Query: 1056 KNARLKELGWKLLLQV 1071
                   L  ++LLQV
Sbjct: 857  GALSDAGLKTRMLLQV 872



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 110/276 (39%), Gaps = 76/276 (27%)

Query: 415 DLLDGGGR-------DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
           DL DGG +       + L       E+ +I KV  N+ +D  V + YG++V+ +  DTM 
Sbjct: 378 DLADGGMKPDQIDESEALGRLKAILENDAILKVGQNFKYDLAVFQRYGVRVAPYD-DTML 436

Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527
           ++ +  +     G   L     +R +              G+T       IS K++ G  
Sbjct: 437 ISYVQAAGLHNHGMDEL----AERHL--------------GHT------CISFKEVCGTG 472

Query: 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGK 587
           K +K  S   + T                 Y+A D+  TL+L++ LK  L          
Sbjct: 473 KSQKRFSEIDLKTAT--------------EYAAEDADITLRLWELLKAGL---------- 508

Query: 588 PVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRF 642
              GK +   Y+   +P  ++L  ME  G+ VD   LS +     +K+A AE+ A     
Sbjct: 509 --AGKGLSTVYETLERPLPQVLTDMELAGVKVDVAQLSRLSSDFAQKMAEAEETA----- 561

Query: 643 RKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSK 676
                 H       N+GS  Q+ ++LFG  G P  K
Sbjct: 562 ------HKLAGTKFNLGSPKQIGEILFGEMGLPGGK 591


>gi|398349463|ref|ZP_10534166.1| DNA polymerase I [Leptospira broomii str. 5399]
          Length = 913

 Score =  160 bits (406), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 154/301 (51%), Gaps = 34/301 (11%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            ++T+ E  E        I  L +      LIS ++  L  + VS K+GR+H + N+    
Sbjct: 591  YSTDHEVLEELLGEHPIIEKLLDYRKYTKLISTYVETLP-TMVSAKDGRIHTNYNMTIAA 649

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLANCKSML 892
            TGRLS+  PNLQN P  EK+   IR+ FI+   +  L+  DY Q+ELRI+AH++   +M+
Sbjct: 650  TGRLSSTDPNLQNIPIREKEGRLIRKGFISGHKDFELLSLDYSQIELRIMAHVSGDPAMV 709

Query: 893  DAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLN 952
            DA+K G D H RTA  +Y       ET                   D     R KAK++N
Sbjct: 710  DAYKKGIDIHKRTASALY----GVSET-------------------DVTPEMRDKAKVVN 746

Query: 953  FSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGR 1012
            FS+ YG TP GL+R+ +V  +EAK  ++ +  +   V  + +          +V TL GR
Sbjct: 747  FSVIYGVTPYGLSRNLRVPRDEAKGFIERYLTQYPGVQKYMDETIAFCEQKGYVETLKGR 806

Query: 1013 ARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQ 1070
             R  P I S  R  +    R AINTP+QG+ AD+   AM+ I K  R+ +  W  KLLLQ
Sbjct: 807  RRPVPDINSTNRMSKEAARRVAINTPIQGTCADMIKIAMMHIHK--RIADQSWKSKLLLQ 864

Query: 1071 V 1071
            V
Sbjct: 865  V 865



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 98/242 (40%), Gaps = 56/242 (23%)

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
             P   DPSI KV  N  +D  VLEN+G +V     DTM  + +     R    ++++ L
Sbjct: 391 LGPVLSDPSIPKVGQNIKYDLIVLENHGFEVGNIVFDTMLASYILQPESRH---HNMDDL 447

Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
                  +++   YQ               I   D+ G  K KK+              L
Sbjct: 448 -------AKELLNYQT--------------IHYSDLVGTGKNKKN--------------L 472

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
              E E    Y++ D+  TL+LY SL+K            PV    M   Y+E   P   
Sbjct: 473 WEVELEKVSEYASEDADITLRLYNSLRK------------PVKDSGMESVYKEIDLPLIR 520

Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
           +L  ME  G+ +D EY +E+ K  + E +  V    K+A +        N+ S  +L+++
Sbjct: 521 VLADMEKAGIAIDTEYFAELSKDFQREVKDLVRHIHKYAGRE------FNIASTKELQKV 574

Query: 668 LF 669
           LF
Sbjct: 575 LF 576


>gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
 gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
          Length = 903

 Score =  160 bits (406), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/250 (36%), Positives = 139/250 (55%), Gaps = 24/250 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            R+H S N   T TGRLS+  PNLQN P   +   +IR+AFIA PG  L+  DY Q++LR+
Sbjct: 629  RLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPPGTVLLAGDYSQIDLRV 688

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAHL+   ++++AF++  D H+ TA  +                    + PP  + K+  
Sbjct: 689  LAHLSQDPALIEAFQSDQDIHTATAARLL-------------------NIPPSKVTKE-- 727

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
              +RR AK +NF + YG +  GL +  ++S+EEA K +  ++ +   V  +    K++ R
Sbjct: 728  --QRRLAKTVNFGVIYGMSSYGLEQATELSLEEADKFIKAYFEKYPRVAVYFSEIKQQVR 785

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V TLLGR R  P I S  R  R   ER AIN PVQG++AD+   AM+ + +  + +
Sbjct: 786  TQGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKLAMVRLDEKLKEE 845

Query: 1062 ELGWKLLLQV 1071
            +L  +LLLQV
Sbjct: 846  KLKSRLLLQV 855


>gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
 gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
          Length = 937

 Score =  160 bits (406), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/241 (39%), Positives = 133/241 (55%), Gaps = 24/241 (9%)

Query: 815  SNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S ++  +GRVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA PG  +I AD
Sbjct: 638  SMINPTSGRVHTSYHQAVTVTGRLSSREPNLQNIPIRSEEGRRIRQAFIAPPGYQIIAAD 697

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELRI+AHL+    ++ AF A  D H  TA  ++     +VET              
Sbjct: 698  YSQIELRIMAHLSQDSGLIKAFTADKDIHRATAAEVF---NVSVET-------------- 740

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                  A   +RR AK +NF + YG +  GLAR   ++  EA+  +DL++     V  + 
Sbjct: 741  ------ATDEQRRSAKAINFGLIYGMSAFGLARQLGIARVEAQHYIDLYFARYPGVANYM 794

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            EA +K++    +V TL GR    P I + +  +R   ER AIN P+QG+AAD+   AM+E
Sbjct: 795  EAIRKQAATQGYVTTLSGRRLYLPDINASSAMRRKAAEREAINAPMQGTAADIIKSAMIE 854

Query: 1054 I 1054
            I
Sbjct: 855  I 855


>gi|395764875|ref|ZP_10445495.1| DNA polymerase I [Bartonella sp. DB5-6]
 gi|395413692|gb|EJF80154.1| DNA polymerase I [Bartonella sp. DB5-6]
          Length = 968

 Score =  160 bits (406), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/259 (38%), Positives = 140/259 (54%), Gaps = 26/259 (10%)

Query: 815  SNVSGKNGRVHC--SLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA 872
            S +  K GRVH   SL I T TGRLS+  PNLQN P    +  KIR AFIA  G+ L+ A
Sbjct: 682  SYIFPKTGRVHTNYSLAITT-TGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSA 740

Query: 873  DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKP 932
            DY Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+           V +E    D  
Sbjct: 741  DYSQIELRILAHIADITALKEAFAQGQDIHAITASQMF----------GVSIEGMSSDI- 789

Query: 933  PVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
                        RR+AK +NF I YG +  GLA    +S +EA + + L++     +  +
Sbjct: 790  ------------RRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQLYFERFPGIKDY 837

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             E  K   R + +V T+ GR   +P IK+     R+  ERAAIN P+QGSAAD+   AM+
Sbjct: 838  MEKTKTFVRQNGYVETIFGRRVHYPEIKAANLQIRSFNERAAINAPIQGSAADIIRRAMI 897

Query: 1053 EISKNARLKELGWKLLLQV 1071
            ++      ++L  K+LLQV
Sbjct: 898  QMEGALEKEKLSAKMLLQV 916


>gi|444921443|ref|ZP_21241279.1| DNA polymerase I [Wohlfahrtiimonas chitiniclastica SH04]
 gi|444507481|gb|ELV07657.1| DNA polymerase I [Wohlfahrtiimonas chitiniclastica SH04]
          Length = 914

 Score =  160 bits (406), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/259 (36%), Positives = 144/259 (55%), Gaps = 26/259 (10%)

Query: 815  SNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + V+ + GR+H S N   T TGRLS+ +PNLQN P   ++  KIR+AFIA PG  +I AD
Sbjct: 632  AEVNPQTGRIHTSFNQALTSTGRLSSSKPNLQNIPVRTEEGRKIREAFIAKPGYRMISAD 691

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR++AH +  +++++AFK   D H  TA  ++                H      
Sbjct: 692  YSQIELRLMAHFSGDETLINAFKNDLDIHRATASEVF----------------H------ 729

Query: 934  VPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
             PL  D  + E RR AK +NF + YG    GLA+   +S  +A++ +  +++    +L +
Sbjct: 730  TPL--DEVSGELRRSAKAINFGLIYGMGAFGLAKQLGISRGQAQEYIQRYFSRYPTILQF 787

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             E  K+++R + +V TLLGR    P I S    Q+   ER A+N P+QG+AAD+   AM+
Sbjct: 788  MEDAKEKARANGYVETLLGRRLPLPEINSSNGMQKAGAERIAVNAPLQGTAADIIKLAMI 847

Query: 1053 EISKNARLKELGWKLLLQV 1071
            E+ +      L  K+LLQV
Sbjct: 848  EVDQKLNETGLDAKVLLQV 866



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 129/315 (40%), Gaps = 63/315 (20%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAP 430
           A DTE   +D  Q   V     I  +I +G EA +   +  + V       +D+L+  AP
Sbjct: 340 AVDTETDGLDAMQAKLVG----ISLAI-TGGEAIYIPLQHDLLVAPEQLPMQDVLDRLAP 394

Query: 431 FFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490
             EDP++  V  N  +D H+ + YG+ ++G   DTM  + +WD++ +    ++++ L   
Sbjct: 395 LLEDPNVALVGQNIKYDWHIFKRYGITLNGIADDTMLASYVWDATEK----HNMDDLA-- 448

Query: 491 RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQRE 550
              +      +++   KG                     KK  +  +I    P+E     
Sbjct: 449 LNYLEHTTTPFEEIAGKG---------------------KKQKTFNEI----PIETATH- 482

Query: 551 ERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILV 610
                  Y+A D+  TL+LY +L  ++  +            ++   YQ    P   +L 
Sbjct: 483 -------YAAEDADITLRLYHALSPRVASID-----------TLQKLYQTIEMPLLTVLA 524

Query: 611 KMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
           KME EG+LV+  +L  + +      +A   +  + A +        N+GS  QL  +LF 
Sbjct: 525 KMEHEGILVNVPHLEALSRELSQRLDALEAQAYELAGET------FNLGSPKQLGTILFE 578

Query: 671 --GKPNSKDDSESLP 683
             G P  K  ++  P
Sbjct: 579 KLGLPVVKKTAKGQP 593


>gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB]
 gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB]
          Length = 928

 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/248 (39%), Positives = 136/248 (54%), Gaps = 27/248 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + +SG   RVH S +   T TGRLS+  PNLQN P    +  +IRQAF+A  G+ 
Sbjct: 643  LPLMINPISG---RVHTSYHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFVAAKGHR 699

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++         G  L +  G
Sbjct: 700  IVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVF---------GVALDKVSG 750

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 751  E--------------QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 796

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++ +  + +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+  
Sbjct: 797  VLRYMENTRQLAASNGYVETLEGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIK 856

Query: 1049 CAMLEISK 1056
             AM+ + +
Sbjct: 857  RAMIAVDE 864


>gi|398796189|ref|ZP_10555817.1| DNA polymerase I [Pantoea sp. YR343]
 gi|398204041|gb|EJM90853.1| DNA polymerase I [Pantoea sp. YR343]
          Length = 930

 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/259 (38%), Positives = 137/259 (52%), Gaps = 35/259 (13%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + V+G   RVH S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  GN 
Sbjct: 645  LPLMINPVTG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAGSGNR 701

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++         G  L +  G
Sbjct: 702  IVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVF---------GVALSKVSG 752

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 753  E--------------QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 798

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  + ++    +V TL GR    P I S    +R   ERAAIN P+QG+AAD+  
Sbjct: 799  VLRYMEETRAKAAEKGYVETLDGRRLWLPDITSSNAIRRKAAERAAINAPMQGTAADIIK 858

Query: 1049 CAMLEISKNARLKELGWKL 1067
             AM+ +         GW L
Sbjct: 859  RAMIAVD--------GWLL 869


>gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205]
 gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205]
          Length = 923

 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 150/299 (50%), Gaps = 25/299 (8%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARR 841
            Q+ R     I  +     +  L+  +I  L    ++ + G +H S N   T TGRLS+  
Sbjct: 610  QQLRSKSPIIDEILNYRGLKKLLGTYIDALPKL-INSRTGHIHASFNQAITATGRLSSSD 668

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            PNLQN P  + D  +IR+ FI  PG     ADY Q+ELRI+AHL+   +M++AF+ G D 
Sbjct: 669  PNLQNIPVRDDDGKEIRRCFIPEPGCLFFSADYSQIELRIMAHLSQDPNMVEAFREGSDI 728

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TA  +                WH ED      +K+   ++R+KAK  NF I YG T 
Sbjct: 729  HAATAAKI----------------WH-ED------IKEVTDAQRKKAKTANFGIIYGITT 765

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GLA+   +   EAK+ ++ ++     V  + E  K+ +R   +  TL  R R  P I S
Sbjct: 766  FGLAQRMNIENREAKQIIEDYFRTFPGVQAYMEKAKEMAREKGYAETLFHRRRYLPDINS 825

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSFF 1080
               + R   ER AIN P+QGS AD+   AM+ I    R + +  K+++QV    +FS +
Sbjct: 826  KNGTVRGFAERNAINAPIQGSEADIIKVAMIRIFNRFRAEGIRSKMIIQVHDELNFSVY 884



 Score = 48.5 bits (114), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 92/249 (36%), Gaps = 60/249 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++N F P +E+P I KV  N  +D  VL NYG+++ G   DTM    L          Y 
Sbjct: 396 IVNIFKPLYENPEILKVGQNIKYDYEVLINYGIEIQGKMFDTMLAHYLIQPELYHNMDYL 455

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
            E     + +  E+         KG   +      SM+D                  +AP
Sbjct: 456 AEVFLNYQTIHIEELIG-----PKGKNQK------SMRD------------------LAP 486

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            +            Y+A D+  TL+L   L+ KL E+  +            D +     
Sbjct: 487 SD---------IYEYAAEDADITLRLKNVLESKLKEIDCE------------DLFWNVEM 525

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
           P   +L  ME  G+ +D + L E         E   NR  +    H  +   +  N+ S 
Sbjct: 526 PLVPVLAHMEMTGVCIDTDTLKET-------SENLTNRLNE-IEHHIYELAGESFNIASP 577

Query: 662 TQLRQLLFG 670
            Q+ ++LFG
Sbjct: 578 RQVGEILFG 586


>gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
 gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
          Length = 933

 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/257 (36%), Positives = 139/257 (54%), Gaps = 24/257 (9%)

Query: 816  NVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
            +V+ + GRVH S  +  T TGRLS+  PNLQN P   ++  +IR+AFIA PG+ LI ADY
Sbjct: 652  DVNPRTGRVHTSFQMAITTTGRLSSNEPNLQNIPIRTEEGSRIRRAFIADPGHVLISADY 711

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+   + D+F  G D H+RTA  ++             +   G D    
Sbjct: 712  SQIELRLLAHVADIPQLKDSFANGEDIHARTASEVFG------------VPMQGMD---- 755

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                   +  RR+AK +NF I YG +  GLAR   +S  EA++ +D ++     +  + E
Sbjct: 756  -------SLTRRRAKAINFGIIYGISAFGLARSLAISPGEARQYIDAYFARYPGIRDYME 808

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              K+E+RI+  V T  GR    P I     ++R + ER AIN P+QG AAD+   AM+ +
Sbjct: 809  RTKEEARINGFVVTPFGRRCWVPGIADRNPARRGYAERQAINAPLQGGAADIIKRAMVRL 868

Query: 1055 SKNARLKELGWKLLLQV 1071
                       ++LLQV
Sbjct: 869  PAVLADNSFQTRMLLQV 885


>gi|422939217|ref|YP_007012364.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
 gi|407294368|gb|AFT93274.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
          Length = 897

 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/236 (38%), Positives = 129/236 (54%), Gaps = 24/236 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            NGRVH S N   T TGRLS+  PNLQN P    +  KIR+AFIA  G  ++ ADY Q+EL
Sbjct: 620  NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIEL 679

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K++L  F    D HS TA  +     + V + Q                  
Sbjct: 680  RIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQ------------------ 721

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RRKAK +NF + YG +  GLAR  ++   EA++ +D+++N    V  +    K+ 
Sbjct: 722  -----RRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEF 776

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            ++ + +V T+LGR    P I S    QRN  ERAAIN P+QG+AAD+   AM+ ++
Sbjct: 777  AKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADIIKKAMINVN 832



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L++  P F D    KV HN+ FD  VL  Y ++++G   DTM MA +  SS    G + 
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+                                K+  G   +     AG   T   
Sbjct: 427 MDSLS--------------------------------KEHLGIEPIAYTAIAG---TGKQ 451

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            + L + + E+   Y+A D+  T +L+    K LLE            K +F  Y E   
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNHF-KALLEQD----------KVLFKLYCELEM 500

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
           P   IL +ME  G+ +D   L         +Q A++    K     C +   +  N+ S 
Sbjct: 501 PLTIILNQMEKTGVKIDATKL--------IQQSASLETSIKELESKCYNLAGQEFNLSSP 552

Query: 662 TQLRQLLF 669
            QLR++LF
Sbjct: 553 VQLREILF 560


>gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418]
 gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica
            FTNF002-00]
 gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|421751048|ref|ZP_16188106.1| DNA polymerase I [Francisella tularensis subsp. tularensis AS_713]
 gi|421752904|ref|ZP_16189914.1| DNA polymerase I [Francisella tularensis subsp. tularensis 831]
 gi|421756636|ref|ZP_16193539.1| DNA polymerase I [Francisella tularensis subsp. tularensis 80700103]
 gi|421758503|ref|ZP_16195349.1| DNA polymerase I [Francisella tularensis subsp. tularensis 70102010]
 gi|423051306|ref|YP_007009740.1| DNA polymerase I [Francisella tularensis subsp. holarctica F92]
 gi|424673771|ref|ZP_18110702.1| DNA polymerase I [Francisella tularensis subsp. tularensis 70001275]
 gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
            tularensis WY96-3418]
 gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
            holarctica FTNF002-00]
 gi|409088923|gb|EKM88979.1| DNA polymerase I [Francisella tularensis subsp. tularensis 831]
 gi|409089034|gb|EKM89088.1| DNA polymerase I [Francisella tularensis subsp. tularensis AS_713]
 gi|409092195|gb|EKM92173.1| DNA polymerase I [Francisella tularensis subsp. tularensis 70102010]
 gi|409093375|gb|EKM93321.1| DNA polymerase I [Francisella tularensis subsp. tularensis 80700103]
 gi|417435546|gb|EKT90436.1| DNA polymerase I [Francisella tularensis subsp. tularensis 70001275]
 gi|421952028|gb|AFX71277.1| DNA polymerase I [Francisella tularensis subsp. holarctica F92]
          Length = 897

 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/236 (38%), Positives = 129/236 (54%), Gaps = 24/236 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            NGRVH S N   T TGRLS+  PNLQN P    +  KIR+AFIA  G  ++ ADY Q+EL
Sbjct: 620  NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIEL 679

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K++L  F    D HS TA  +     + V + Q                  
Sbjct: 680  RIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQ------------------ 721

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RRKAK +NF + YG +  GLAR  ++   EA++ +D+++N    V  +    K+ 
Sbjct: 722  -----RRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEF 776

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            ++ + +V T+LGR    P I S    QRN  ERAAIN P+QG+AAD+   AM+ ++
Sbjct: 777  AKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADIIKKAMINVN 832



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L++  P F D    KV HN+ FD  VL  Y ++++G   DTM MA +  SS    G + 
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+                                K+  G   +     AG   T   
Sbjct: 427 MDSLS--------------------------------KEHLGIEPIAYTAIAG---TGKQ 451

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            + L + + E+   Y+A D+  T +L+    K LLE            K +F  Y E   
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNHF-KALLEQD----------KVLFKLYCELEM 500

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
           P   IL +ME  G+ +D   L         +Q A++    K     C +   +  N+ S 
Sbjct: 501 PLTIILNQMEKTGVKIDATKL--------IQQSASLETSIKELESKCYNLAGQEFNLSSP 552

Query: 662 TQLRQLLF 669
            QLR++LF
Sbjct: 553 VQLREILF 560


>gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
 gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
          Length = 882

 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 155/282 (54%), Gaps = 26/282 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            I A+     +  L S +I  L    +  K  +VH   N   T TGRLS+  PNLQN P  
Sbjct: 577  IDAILTFRQLGKLRSTYIEGLT-KEIHTKTSKVHTLYNQATTATGRLSSTDPNLQNIPIR 635

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  KIR+AFI +  G  ++ ADY Q+ELRILAH++  ++++DAF+ G D H+RTAM++
Sbjct: 636  MEEGRKIREAFIPSEDGWYMLAADYSQIELRILAHISQDENLIDAFQKGMDIHTRTAMDV 695

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +                 G  +  V  L       RR+AK +NF I YG +  GL+++  
Sbjct: 696  F-----------------GVSEEEVTSLM------RRQAKAVNFGIVYGISDYGLSQNLN 732

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ +EA   ++ +++    V  W +   ++++ D HV TLL R R  P I+S   + R+ 
Sbjct: 733  ITRKEAGDFIERYFDVFSGVKRWMDEIVQQAKADGHVTTLLNRRRYLPDIRSSNFNLRSF 792

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             ER A+NTP+QG+AADV   AM+ + +    K L  ++LLQV
Sbjct: 793  AERTAMNTPIQGTAADVIKLAMIRMQEALEEKGLASRMLLQV 834


>gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
 gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
          Length = 1009

 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 134/257 (52%), Gaps = 24/257 (9%)

Query: 816  NVSGKNGRVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
            ++    GR+H C    +T TGRLS+  PNLQN P   ++   IR AFIA PG  LI ADY
Sbjct: 724  HIDADTGRIHTCYSLASTSTGRLSSTEPNLQNIPIRTREGRMIRSAFIAAPGKKLISADY 783

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++  AF  G D H+ TA  M+                       V
Sbjct: 784  SQIELRVLAHMADIPALKHAFAEGLDIHAMTASEMF----------------------GV 821

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            P +KD     RR+AK +NF I YG +  GL++   +  +EA   +  ++     +  + +
Sbjct: 822  P-VKDMPGEVRRRAKAINFGIIYGISAFGLSQQLGIPRQEAGDYIAKYFERFPGIRAYMD 880

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A + +   D HV TL GR   FP IK+   + R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 881  AMRSKVHEDGHVETLFGRKIHFPEIKTPKWNMRQFFERAAINAPIQGTAADIIRRAMVRV 940

Query: 1055 SKNARLKELGWKLLLQV 1071
                    +  ++LLQV
Sbjct: 941  PAALEQAGVRARMLLQV 957


>gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18]
 gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica
            OSU18]
          Length = 897

 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/236 (38%), Positives = 129/236 (54%), Gaps = 24/236 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            NGRVH S N   T TGRLS+  PNLQN P    +  KIR+AFIA  G  ++ ADY Q+EL
Sbjct: 620  NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIEL 679

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K++L  F    D HS TA  +     + V + Q                  
Sbjct: 680  RIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQ------------------ 721

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RRKAK +NF + YG +  GLAR  ++   EA++ +D+++N    V  +    K+ 
Sbjct: 722  -----RRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEF 776

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            ++ + +V T+LGR    P I S    QRN  ERAAIN P+QG+AAD+   AM+ ++
Sbjct: 777  AKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADIIKKAMINVN 832



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L++  P F D    KV HN+ FD  VL  Y ++++G   DTM MA +  SS    G + 
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+                                K+  G   +     AG   T   
Sbjct: 427 IDSLS--------------------------------KEHLGIEPIAYTAIAG---TGKQ 451

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            + L + + E+   Y+A D+  T +L+    K LLE            K +F  Y E   
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNHF-KALLEQD----------KVLFKLYCELEM 500

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
           P   IL +ME  G+ +D   L         +Q A++    K     C +   +  N+ S 
Sbjct: 501 PLTIILNQMEKTGVKIDATKL--------IQQSASLETSIKELESKCYNLAGQEFNLSSP 552

Query: 662 TQLRQLLF 669
            QLR++LF
Sbjct: 553 VQLREILF 560


>gi|386585743|ref|YP_006082145.1| DNA polymerase I [Streptococcus suis D12]
 gi|353737889|gb|AER18897.1| DNA polymerase I [Streptococcus suis D12]
          Length = 878

 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 158/284 (55%), Gaps = 28/284 (9%)

Query: 791  AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
             +S + E   I  L S +++ LQ + +  ++G++H   +   T+TGRLS+  PNLQN P 
Sbjct: 572  VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629

Query: 850  -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
             L++ R  IR+AF+    NS+++A DY Q+ELR+LAH++  + +++AF+ G D H+ TAM
Sbjct: 630  RLDQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDQHLIEAFQQGADIHTSTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++      +E          ED  P         ++RR AK +NF + YG +  GL+ +
Sbjct: 689  RVF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLSNN 726

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAK  +D ++     +  + E   +E+R   +V T+  R R  P I S   + R
Sbjct: 727  LGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVR 786

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            N  ER AIN+P+QGSAAD+   AM+ + K      L  ++LLQV
Sbjct: 787  NFAERTAINSPIQGSAADILKVAMINLDKALTETGLATRMLLQV 830


>gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147]
 gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 897

 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/236 (38%), Positives = 129/236 (54%), Gaps = 24/236 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            NGRVH S N   T TGRLS+  PNLQN P    +  KIR+AFIA  G  ++ ADY Q+EL
Sbjct: 620  NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIEL 679

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K++L  F    D HS TA  +     + V + Q                  
Sbjct: 680  RIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQ------------------ 721

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RRKAK +NF + YG +  GLAR  ++   EA++ +D+++N    V  +    K+ 
Sbjct: 722  -----RRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEF 776

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            ++ + +V T+LGR    P I S    QRN  ERAAIN P+QG+AAD+   AM+ ++
Sbjct: 777  AKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADIIKKAMINVN 832



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L++  P F D    KV HN+ FD  VL  Y ++++G   DTM MA +  SS    G + 
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+                                K+  G   +     AG   T   
Sbjct: 427 MDSLS--------------------------------KEHLGIEPIAYTAIAG---TGKQ 451

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            + L + + E+   Y+A D+  T +L+    K LLE            K +F  Y E   
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNHF-KALLEQD----------KVLFKLYCELEM 500

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
           P   IL +ME  G+ +D   L         +Q A++    K     C +   +  N+ S 
Sbjct: 501 PLTTILNQMEKTGVKIDATKL--------IQQSASLETSIKELESKCYNLAGQEFNLSSP 552

Query: 662 TQLRQLLF 669
            QLR++LF
Sbjct: 553 VQLREILF 560


>gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987]
 gi|379716484|ref|YP_005304820.1| DNA polymerase I [Francisella tularensis subsp. tularensis TIGB03]
 gi|379725167|ref|YP_005317353.1| DNA polymerase I [Francisella tularensis subsp. tularensis TI0902]
 gi|385793869|ref|YP_005830275.1| DNA polymerase I [Francisella tularensis subsp. tularensis NE061598]
 gi|421754721|ref|ZP_16191687.1| DNA polymerase I [Francisella tularensis subsp. tularensis 80700075]
 gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis NE061598]
 gi|377826616|gb|AFB79864.1| DNA polymerase I [Francisella tularensis subsp. tularensis TI0902]
 gi|377828161|gb|AFB78240.1| DNA polymerase I [Francisella tularensis subsp. tularensis TIGB03]
 gi|409090484|gb|EKM90500.1| DNA polymerase I [Francisella tularensis subsp. tularensis 80700075]
          Length = 897

 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/236 (38%), Positives = 129/236 (54%), Gaps = 24/236 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            NGRVH S N   T TGRLS+  PNLQN P    +  KIR+AFIA  G  ++ ADY Q+EL
Sbjct: 620  NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIEL 679

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K++L  F    D HS TA  +     + V + Q                  
Sbjct: 680  RIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQ------------------ 721

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RRKAK +NF + YG +  GLAR  ++   EA++ +D+++N    V  +    K+ 
Sbjct: 722  -----RRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEF 776

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            ++ + +V T+LGR    P I S    QRN  ERAAIN P+QG+AAD+   AM+ ++
Sbjct: 777  AKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADIIKKAMINVN 832



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L++  P F D    KV HN+ FD  VL  Y ++++G   DTM MA +  SS    G + 
Sbjct: 371 VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+                                K+  G   +     AG   T   
Sbjct: 427 MDSLS--------------------------------KEHLGIEPIAYTAIAG---TGKQ 451

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            + L + + E+   Y+A D+  T +L+    K LLE            K +F  Y E   
Sbjct: 452 QQTLDQVDIEIVAKYAAEDADITFRLFNHF-KALLEQD----------KVLFKLYCELEM 500

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
           P   IL +ME  G+ +D   L         +Q A++    K     C +   +  N+ S 
Sbjct: 501 PLTIILNQMEKTGVKIDATKL--------IQQSASLETSIKELESKCYNLAGQEFNLSSP 552

Query: 662 TQLRQLLF 669
            QLR++LF
Sbjct: 553 VQLREILF 560


>gi|410629495|ref|ZP_11340195.1| DNA polymerase I [Glaciecola arctica BSs20135]
 gi|410150980|dbj|GAC17062.1| DNA polymerase I [Glaciecola arctica BSs20135]
          Length = 916

 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 135/241 (56%), Gaps = 24/241 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S +     TGRLS+  PNLQN P   ++  ++RQAFIA PG  ++ ADY 
Sbjct: 635  INARTGRVHTSYHQAIAATGRLSSTDPNLQNIPIRTEEGRRVRQAFIARPGYKIVAADYS 694

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +L+AF  G D H+ TA  ++                   D P   
Sbjct: 695  QIELRIMAHLSRDKGLLNAFATGQDIHTATASEVF-------------------DTP--- 732

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             L++    +RR AK +NF + YG +  GL++   +S  +A+K +DL++     VL + E 
Sbjct: 733  -LEEVSIEQRRNAKAINFGLIYGMSAFGLSKQLNISRHDAQKYMDLYFERYPLVLKYMED 791

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             ++ ++ + +V T+ GR    P I +    +R   ERAAIN P+QG+AAD+   AML + 
Sbjct: 792  TRQIAKENGYVSTVFGRRLYLPEINASNGMRRKGAERAAINAPMQGTAADIIKKAMLAVD 851

Query: 1056 K 1056
            K
Sbjct: 852  K 852


>gi|357030774|ref|ZP_09092718.1| DNA polymerase I [Gluconobacter morbifer G707]
 gi|356415468|gb|EHH69111.1| DNA polymerase I [Gluconobacter morbifer G707]
          Length = 924

 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/252 (38%), Positives = 142/252 (56%), Gaps = 28/252 (11%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  +  T TGRLS+  PNLQN P   ++  +IR+AF+A PG  L+ ADY Q+ELR+
Sbjct: 650  RVHTSYQMAVTTTGRLSSNEPNLQNIPIRTEEGGRIRKAFVAAPGYVLLSADYSQIELRL 709

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A  + +L+AF+ G D H+RTA  ++             +   G D    PL     
Sbjct: 710  LAHVAKIEPLLEAFRLGQDIHARTASEVFG------------IPLEGMD----PL----- 748

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLAR  ++S  EA+  +D ++     +  + E  K+E++
Sbjct: 749  --TRRRAKAINFGIIYGISAFGLARQLQISAGEARSYIDAYFARYPGIRDYMERTKEEAK 806

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T  GR    P I+  +  +R + ER AIN P+QG AAD+   AM+ +++  RL 
Sbjct: 807  KHGYVMTPFGRRCYVPGIREKSGVRRAYAERQAINAPLQGGAADIIKRAMVHLAR--RLP 864

Query: 1062 ELGW--KLLLQV 1071
            E G   ++LLQV
Sbjct: 865  ETGLNARMLLQV 876


>gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
 gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
          Length = 901

 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/280 (36%), Positives = 151/280 (53%), Gaps = 29/280 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            L E  ++  L S +   LPLQ   V+ + GRVH S +   T TGRLS+  PNLQN P   
Sbjct: 600  LLEYRALSKLKSTYTDRLPLQ---VNPRTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRS 656

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
             +  +IRQAFIA PG  L+ ADY Q+ELRI+AHL++ + +L AF+AG D H RTA  ++ 
Sbjct: 657  AEGRRIRQAFIAPPGYCLLAADYSQIELRIMAHLSDDEGLLAAFEAGEDIHQRTAAEIF- 715

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
                               + P   L+     +RR AK +NF + YG +  GLA+   +S
Sbjct: 716  -------------------RTP---LEGVTPEQRRSAKAINFGLIYGMSAHGLAQQLGIS 753

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
               A+  ++ +++    V  + +A  +++R   +V TL GR    P I S    +RN  E
Sbjct: 754  RSAAQHYIERYFHRYPGVKAYMDAICQQARQKGYVETLFGRRLYLPEIHSRQAQRRNQAE 813

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R AIN P+QG+AAD+   AML   +  + +    ++++QV
Sbjct: 814  RMAINAPMQGTAADIIKRAMLRADQWLQKQGSNARMIMQV 853


>gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
 gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
          Length = 914

 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 138/256 (53%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++  +GR+H S N   T TGRLS+  PNLQN P   ++  +IR AFIA PG+  + ADY 
Sbjct: 634  INPADGRIHTSFNQTVTATGRLSSSNPNLQNIPVRTQEGRRIRGAFIAAPGHRFLAADYS 693

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q++LR+LAH +    +L+AF+   D H RTA  ++  +  A+ T                
Sbjct: 694  QIDLRVLAHYSADPMLLEAFQQDQDIHRRTAAEIF-RVNPAMVT---------------- 736

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                  A  RR AK +NF I YG +  GLA   + S +EA+  +D ++   + V T+ E 
Sbjct: 737  ------ADMRRVAKTINFGIIYGMSAFGLAEQLRCSRKEAQVFIDRYFELYRGVKTFMEE 790

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +++R D  V TLL R R+ P I S  + +R   ER AINTP+QG+AAD+   A +   
Sbjct: 791  IVEQARRDGFVRTLLKRRRQLPEINSSNKLRREFAERTAINTPIQGTAADIIKLAAIACD 850

Query: 1056 KNARLKELGWKLLLQV 1071
            +  R K    + LLQ+
Sbjct: 851  RELRRKNFNTEALLQI 866


>gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
          Length = 995

 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 151/300 (50%), Gaps = 31/300 (10%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GR+H S  +  T TGRL++  PNLQN P   K+  +IR AFIA  G  LI ADY 
Sbjct: 710  INAETGRIHTSYALGATTTGRLASSDPNLQNIPIRTKEGREIRTAFIADKGMQLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRVLAHVADIPQLKKAFAEGLDIHAMTASEMFG----------------------VP 807

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            + KD  +  RR+AK +NF I YG +  GLA    +S EEA   +  ++     +  + +A
Sbjct: 808  V-KDMPSEVRRRAKAINFGIIYGISAFGLANQLSISREEASDYIKTYFQRFPGIRDYMDA 866

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             KK+     HV T+ GR   +P I +   S R  +ERAAIN P+QGSAAD+   AM+ + 
Sbjct: 867  TKKQVHAHGHVETIFGRRIHYPEINTKNPSMRGFLERAAINAPIQGSAADIIRRAMIRMP 926

Query: 1056 K---NARLKELGWKLLLQVL--FFFSFSFFSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
                +A+L     ++LLQV     F  +      +++    V+  A  P    +  +H D
Sbjct: 927  AALVDAKLSS--ARMLLQVHDELVFEVADNEASALITTARRVMETAAEPALKLAVPIHVD 984


>gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct]
 gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct]
          Length = 829

 Score =  160 bits (404), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 162/312 (51%), Gaps = 33/312 (10%)

Query: 761  GCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGK 820
            G TE+T  +   A      A  +  REA   +  + +   +  L S +I PL    +  +
Sbjct: 501  GKTEKTGKRSTSA------AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPR 553

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GR+H   N   T TGRLS+  PNLQN P       +IR+AFIA  G  L+  DY Q+EL
Sbjct: 554  TGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIEL 613

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAHL+  ++++  F+ G D H+ TA  M+   R AV+                PL+  
Sbjct: 614  RVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVD----------------PLM-- 655

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RR AK +NF + YG +   L+++  +  EEA+  ++ ++    +V  W E   +E
Sbjct: 656  -----RRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 710

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
             R   +V TL GR R  P +++  +S R   ER A N PVQG+AAD+   AM+++    R
Sbjct: 711  GRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PR 768

Query: 1060 LKELGWKLLLQV 1071
            L+E+G ++LLQV
Sbjct: 769  LEEMGARMLLQV 780


>gi|410584031|ref|ZP_11321136.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
 gi|410504893|gb|EKP94403.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
          Length = 1072

 Score =  160 bits (404), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 157/300 (52%), Gaps = 34/300 (11%)

Query: 779  FATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSG------KNGRVHCSLNINT 832
            ++T+ E  E   A   + E+     L    ++ LQG+ V G       +GR+H +     
Sbjct: 746  YSTDAEVLETLAARHPIAELV----LEYRSLVKLQGTYVDGLAEHIGPDGRIHTTFQQTV 801

Query: 833  E-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
              TGRLS+ +PNLQN P  ++    +R+AF+A PG+ L+ ADY Q+ELR+LAH +    +
Sbjct: 802  AATGRLSSTQPNLQNIPIRDEPGRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDPGL 861

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AF  G D H+RTA  ++                       VPL +     +RR AK +
Sbjct: 862  VEAFAQGQDVHARTASEIFG----------------------VPL-EQVTPEQRRVAKAV 898

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF +AYG+T  GLAR  ++   +A++ ++ ++     V  + E   + +R    V TLLG
Sbjct: 899  NFGLAYGQTDFGLARALRIDRADARRFMERYFERYPGVKRYMEETVRRARQQGEVTTLLG 958

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I+      R + ER AINTP+QG+AAD+   AM+ + +    + L  +++LQV
Sbjct: 959  RRRPVPEIRHRVFHIRQNAERVAINTPIQGTAADIMKLAMIRVHRALAEEGLRARIVLQV 1018


>gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 833

 Score =  160 bits (404), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 162/312 (51%), Gaps = 33/312 (10%)

Query: 761  GCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGK 820
            G TE+T  +   A      A  +  REA   +  + +   +  L S +I PL    +  +
Sbjct: 505  GKTEKTGKRSTSA------AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPR 557

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GR+H   N   T TGRLS+  PNLQN P       +IR+AFIA  G  L+  DY Q+EL
Sbjct: 558  TGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIEL 617

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAHL+  ++++  F+ G D H+ TA  M+   R AV+                PL+  
Sbjct: 618  RVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVD----------------PLM-- 659

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RR AK +NF + YG +   L+++  +  EEA+  ++ ++    +V  W E   +E
Sbjct: 660  -----RRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 714

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
             R   +V TL GR R  P +++  +S R   ER A N PVQG+AAD+   AM+++    R
Sbjct: 715  GRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PR 772

Query: 1060 LKELGWKLLLQV 1071
            L+E+G ++LLQV
Sbjct: 773  LEEMGARMLLQV 784


>gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus]
          Length = 832

 Score =  160 bits (404), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 162/312 (51%), Gaps = 33/312 (10%)

Query: 761  GCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGK 820
            G TE+T  +   A      A  +  REA   +  + +   +  L S +I PL    +  +
Sbjct: 504  GKTEKTGKRSTSA------AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPR 556

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GR+H   N   T TGRLS+  PNLQN P       +IR+AFIA  G  L+  DY Q+EL
Sbjct: 557  TGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIEL 616

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAHL+  ++++  F+ G D H+ TA  M+   R AV+                PL+  
Sbjct: 617  RVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVD----------------PLM-- 658

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RR AK +NF + YG +   L+++  +  EEA+  ++ ++    +V  W E   +E
Sbjct: 659  -----RRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 713

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
             R   +V TL GR R  P +++  +S R   ER A N PVQG+AAD+   AM+++    R
Sbjct: 714  GRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PR 771

Query: 1060 LKELGWKLLLQV 1071
            L+E+G ++LLQV
Sbjct: 772  LEEMGARMLLQV 783


>gi|423199084|ref|ZP_17185667.1| DNA polymerase I [Aeromonas hydrophila SSU]
 gi|404629621|gb|EKB26366.1| DNA polymerase I [Aeromonas hydrophila SSU]
          Length = 918

 Score =  160 bits (404), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 155/307 (50%), Gaps = 33/307 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 593  KGAPSTAEEVLA---ELAETYELPRLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 646

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 647  SYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCAGYKLVAADYSQIELRIMAHL 706

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++    +AV +                         R
Sbjct: 707  SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTSDM-----------------------R 743

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  +++++   +
Sbjct: 744  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAKAQGY 803

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 804  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDDWIRGIEDES 863

Query: 1065 WKLLLQV 1071
             ++L+QV
Sbjct: 864  IRMLMQV 870



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 118/303 (38%), Gaps = 64/303 (21%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA--DFGNGKSCIWVDLLDGGGRDLLN 426
           + A DTE   +D  +   V     + F+I  G  A   FG+      V L +     +L 
Sbjct: 340 LFAFDTETTSLDYMEARVVG----VSFAIEPGKAAYVPFGHDYLGAPVQLTEAV---VLG 392

Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
           +  P  EDP+  KV  N  +D +VL N+G+++ G   DTM  + + +S            
Sbjct: 393 KLKPLLEDPTRLKVGQNLKYDRNVLLNHGIELQGIAYDTMLESYVLNS------------ 440

Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
            T  R  M    + Y             +  IS +DI G+   +   +  ++   AP   
Sbjct: 441 -TASRHDMDSLARRYLN-----------VETISFEDIAGKGVKQLTFNQIELEQAAP--- 485

Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606
                      Y+A D+  TL+L+++L        W   GK      +   + E   P  
Sbjct: 486 -----------YAAEDADITLRLHQAL--------W---GKLAAEPGLARVFSEIELPLL 523

Query: 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQ 666
            +L +ME  G  ++ + L +  +    E E  +    K A K     +  N+ S  QL +
Sbjct: 524 PVLARMERLGTTIEPKLLHQQSQ----EIEVRLAELEKQAHKLA--GQEFNLSSPKQLGE 577

Query: 667 LLF 669
           +LF
Sbjct: 578 ILF 580


>gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
 gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
          Length = 928

 Score =  160 bits (404), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 136/256 (53%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ K G++H S N   T TGRLS+  PNLQN P  + D  +IR+AFI    +    ADY 
Sbjct: 648  INKKTGKIHTSFNQTVTATGRLSSSNPNLQNIPIRDSDGKEIRKAFIPDQDSLFFSADYS 707

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL++  +M++AF  G D H+ TA  +Y    N + + Q              
Sbjct: 708  QIELRIMAHLSHDNNMMEAFLHGDDIHAATAAKVYKQDINTITSDQ-------------- 753

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RRKAK  NF I YG +  GLA   +V  +EAK+ ++ ++    +V  + + 
Sbjct: 754  ---------RRKAKTANFGIIYGISVFGLAERMQVERKEAKELIEGYFETYPQVKEYMDQ 804

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
               E+R   +V T+  R R  P I S     R   ER AIN P+QGSAAD+   AM+ I 
Sbjct: 805  SIVEAREKGYVETIFNRKRYLPDINSRNAVVRGFSERNAINAPIQGSAADIIKVAMVNIH 864

Query: 1056 KNARLKELGWKLLLQV 1071
            K  + ++L  K++LQV
Sbjct: 865  KRFKEEKLLSKMILQV 880


>gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302]
 gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302]
          Length = 920

 Score =  160 bits (404), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 158/312 (50%), Gaps = 28/312 (8%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
            G   +N ++    Q  R     ++ + +   +  L+  ++  L    ++ + G +H S N
Sbjct: 597  GQYVTNEEVL---QSLRAKHPIVADILDYRGLKKLLGTYVEALP-KLINKRTGHIHTSFN 652

Query: 830  -INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
               T TGRLS+  PNLQN P   +D  +IR+ F+         ADY Q+ELRI+AHL+  
Sbjct: 653  QALTATGRLSSSDPNLQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIMAHLSGD 712

Query: 889  KSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKA 948
            ++M++AF+ G D H+ TA  +                WH +       + D  + ER+KA
Sbjct: 713  ENMIEAFRQGFDIHAATAAKI----------------WHKD-------IADVTSEERKKA 749

Query: 949  KMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHT 1008
            K  NF I YG T  GLA+  ++   EA++ ++ ++    +V  + E  K+E+R   +  T
Sbjct: 750  KQANFGIIYGITTYGLAQRMEIDNREARELIEGYFATFPKVRAYMEQAKEEARRKGYAET 809

Query: 1009 LLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLL 1068
            L GR R  P I S   + R   ER AIN P+QGS AD+   AM+ I +  R + +  K++
Sbjct: 810  LFGRRRYLPDITSKNGTVRGFAERNAINAPIQGSEADIIKIAMIRIWQRFRAENIRSKMI 869

Query: 1069 LQVLFFFSFSFF 1080
            LQV    +FS +
Sbjct: 870  LQVHDELNFSVY 881



 Score = 46.6 bits (109), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           +N F P +EDPSI K+  N  +D  VL+NYG+ + G   DTM
Sbjct: 394 VNIFKPVYEDPSILKIGQNLKYDYEVLKNYGVTLGGKMFDTM 435


>gi|118828|sp|P19821.1|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq
            polymerase 1
 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
 gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
 gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus]
          Length = 832

 Score =  160 bits (404), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 162/312 (51%), Gaps = 33/312 (10%)

Query: 761  GCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGK 820
            G TE+T  +   A      A  +  REA   +  + +   +  L S +I PL    +  +
Sbjct: 504  GKTEKTGKRSTSA------AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPR 556

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GR+H   N   T TGRLS+  PNLQN P       +IR+AFIA  G  L+  DY Q+EL
Sbjct: 557  TGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIEL 616

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAHL+  ++++  F+ G D H+ TA  M+   R AV+                PL+  
Sbjct: 617  RVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVD----------------PLM-- 658

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RR AK +NF + YG +   L+++  +  EEA+  ++ ++    +V  W E   +E
Sbjct: 659  -----RRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 713

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
             R   +V TL GR R  P +++  +S R   ER A N PVQG+AAD+   AM+++    R
Sbjct: 714  GRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PR 771

Query: 1060 LKELGWKLLLQV 1071
            L+E+G ++LLQV
Sbjct: 772  LEEMGARMLLQV 783


>gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3]
 gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3]
          Length = 936

 Score =  160 bits (404), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/240 (37%), Positives = 132/240 (55%), Gaps = 24/240 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S +   T TGRLS+  PNLQN P   +   +IRQAFIA  G  ++ ADY 
Sbjct: 655  INAQTGRVHTSYHQAVTVTGRLSSSDPNLQNIPIRSEQGRRIRQAFIAPQGYKIVAADYS 714

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +L+AF  G D H  TA  ++    + V T Q              
Sbjct: 715  QIELRIMAHLSQDKGLLEAFSTGLDIHKATASEVFSVSVDEVTTNQ-------------- 760

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR AK +NF + YG +  GLA+  K+S  +AK  +D +++    VLT+ + 
Sbjct: 761  ---------RRSAKAINFGLIYGMSAFGLAKQLKISRSDAKLYMDKYFHRYPGVLTYMQT 811

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             + ++R    V T+LGR  + P I S     +   ERAAIN P+QG+AAD+   AML+++
Sbjct: 812  TRDKAREQGFVETILGRRLQLPHINSRNGILKKASERAAINAPMQGTAADIIKKAMLDVA 871


>gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
          Length = 927

 Score =  160 bits (404), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 138/265 (52%), Gaps = 24/265 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + G +H S N   T TGRLS+  PNLQN P   +D  +IR+ FI   G     ADY 
Sbjct: 647  INPRTGHIHTSFNQAVTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEEGCEFFSADYS 706

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR++AHL+   +MLDAF+ G D HS TA  +Y                   DKP   
Sbjct: 707  QIELRVMAHLSQDANMLDAFREGYDIHSATAAKIY-------------------DKPVSE 747

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            + +D    ER KAK  NF I YG T  GLA    +   EAK+ +D ++    +V  + E 
Sbjct: 748  VTRD----ERTKAKRANFGIIYGITVFGLADRLNIERAEAKQLIDGYFKMFPQVRDYMEQ 803

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K+ ++ + +V T   R R  P I S   + R   ER AIN P+QGSAAD+   AM+ I 
Sbjct: 804  AKETAKANGYVETFFHRRRYLPDINSSNATVRGIAERNAINAPIQGSAADIIKVAMVRIF 863

Query: 1056 KNARLKELGWKLLLQVLFFFSFSFF 1080
            +  + + +  K++LQV    +FS  
Sbjct: 864  QRFQRENIRSKMILQVHDELNFSVL 888


>gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405]
 gi|449111795|ref|ZP_21748364.1| DNA polymerase I [Treponema denticola ATCC 33521]
 gi|449113398|ref|ZP_21749903.1| DNA polymerase I [Treponema denticola ATCC 35404]
 gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405]
 gi|448957066|gb|EMB37819.1| DNA polymerase I [Treponema denticola ATCC 33521]
 gi|448959608|gb|EMB40327.1| DNA polymerase I [Treponema denticola ATCC 35404]
          Length = 936

 Score =  160 bits (404), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 141/256 (55%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 656  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 715

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 716  QIELVILAHLSKDQNLVEAFNTGIDVHAKTASLIF-----AVD----------------- 753

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 754  -IKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAN 812

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V TL+GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 813  VCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 872

Query: 1056 KNARLKELGWKLLLQV 1071
            K  + ++L   +LLQV
Sbjct: 873  KALKKQKLDASILLQV 888


>gi|357041237|ref|ZP_09103016.1| DNA polymerase I [Desulfotomaculum gibsoniae DSM 7213]
 gi|355355574|gb|EHG03384.1| DNA polymerase I [Desulfotomaculum gibsoniae DSM 7213]
          Length = 882

 Score =  160 bits (404), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/257 (37%), Positives = 140/257 (54%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADY 874
            ++   GR+H + + + T TGRLS+  PNLQN P   ++  +IR+ FI   PGN ++ ADY
Sbjct: 599  INPTTGRIHTTFHQDVTATGRLSSSNPNLQNIPIRLQEGRRIRRVFIPHQPGNLILTADY 658

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRILAH++   +++ AFK G D H+RTA  ++      V   QV  E         
Sbjct: 659  SQIELRILAHMSGDLNLISAFKQGQDIHTRTAAEVF-----NVPMEQVTPEM-------- 705

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                      R +AK +NF I YG +  GL+RD KVS  EA K +  ++     V  + +
Sbjct: 706  ----------RSRAKAVNFGIVYGISDFGLSRDIKVSRAEAGKYIRSYFERYSGVKEFID 755

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             +  E+R   +  TLL R R  P I S  R  R   ER AINTP+QGSAAD+   AM+ I
Sbjct: 756  RKIAEARDKGYATTLLNRRRYLPDISSRNRVTRAFGERTAINTPIQGSAADIIKLAMVRI 815

Query: 1055 SKNARLKELGWKLLLQV 1071
                + +++  K++LQV
Sbjct: 816  HNELKKRQMATKMILQV 832


>gi|417092589|ref|ZP_11957205.1| DNA polymerase I [Streptococcus suis R61]
 gi|353532268|gb|EHC01940.1| DNA polymerase I [Streptococcus suis R61]
          Length = 878

 Score =  160 bits (404), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 158/284 (55%), Gaps = 28/284 (9%)

Query: 791  AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
             +S + E   I  L S +++ LQ + +  ++G++H   +   T+TGRLS+  PNLQN P 
Sbjct: 572  VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629

Query: 850  -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
             LE+ R  IR+AF+    +S+++A DY Q+ELR+LAH++  + +++AF+ G D H+ TAM
Sbjct: 630  RLEQGRL-IRKAFVPSLEDSVLLASDYSQIELRVLAHISQDQHLIEAFQQGADIHTSTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++      +E          ED  P         ++RR AK +NF + YG +  GL+ +
Sbjct: 689  RVF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLSNN 726

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAK  +D ++     +  + E   +E+R   +V T+  R R  P I S   + R
Sbjct: 727  LGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVR 786

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            N  ER AIN+P+QGSAAD+   AM+ + K      L  ++LLQV
Sbjct: 787  NFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQV 830


>gi|238921711|ref|YP_002935226.1| DNA polymerase I, putative [Edwardsiella ictaluri 93-146]
 gi|238871280|gb|ACR70991.1| DNA polymerase I, putative [Edwardsiella ictaluri 93-146]
          Length = 930

 Score =  160 bits (404), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 105/305 (34%), Positives = 156/305 (51%), Gaps = 31/305 (10%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCS 827
            GA ++N ++     E   A   +  + E  ++  L S +   LPL    V+   GRVH S
Sbjct: 606  GAPSTNEEVLVELAEQGYALPQV--ILEYRTLAKLKSTYTDKLPLM---VNPLTGRVHTS 660

Query: 828  LN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLA 886
             +   T TGRLS+  PNLQN P    +  +IRQAFIA  G+ ++ ADY Q+ELRI+AHL+
Sbjct: 661  YHQAVTATGRLSSSDPNLQNIPVRSDEGRRIRQAFIAPVGSRIVAADYSQIELRIMAHLS 720

Query: 887  NCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERR 946
              K +L AF AG D H  TA  ++     AV                        A +RR
Sbjct: 721  GDKGLLQAFAAGKDIHRATAAEVFGLPLEAVS-----------------------ADQRR 757

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
             AK +NF + YG +  GLAR   +   EA++ +DL++     VL + E  ++ +    +V
Sbjct: 758  SAKAINFGLIYGMSAFGLARQLNIGRGEAQRYMDLYFERYPGVLAYMERTRQLASDQGYV 817

Query: 1007 HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK 1066
             TL GR    P I +    +R   ERAAIN P+QG+AAD+   AM+ +    +  +L  +
Sbjct: 818  ETLDGRRLYLPEINARNGMRRKAAERAAINAPMQGTAADIIKRAMIAVDGWLQETQLEVR 877

Query: 1067 LLLQV 1071
            +++QV
Sbjct: 878  MIMQV 882


>gi|339499087|ref|YP_004697122.1| DNA polymerase I [Spirochaeta caldaria DSM 7334]
 gi|338833436|gb|AEJ18614.1| DNA polymerase I [Spirochaeta caldaria DSM 7334]
          Length = 984

 Score =  160 bits (404), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 101/300 (33%), Positives = 164/300 (54%), Gaps = 31/300 (10%)

Query: 775  NNKIFATEQEAREACDAISA-LCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINT 832
            +  +   E+ ARE  D + A +    ++  L S ++  L  ++ +G++GR+H   +   T
Sbjct: 665  STDVAVLEELARE--DPVPAYILRYRTLAKLKSTYVDTL--ADQAGRDGRLHTHFVQTGT 720

Query: 833  ETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSML 892
             TGRLS+R PNLQN P  +++  +IRQAF+A PG  LI ADY Q+EL +LAHL+    ++
Sbjct: 721  ATGRLSSRDPNLQNIPIRDEEGRRIRQAFVAEPGTLLISADYSQIELVVLAHLSQDPGLI 780

Query: 893  DAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASE-RRKAKML 951
            +AF  G D H RTA  ++                       VP  +D  +SE RR AK +
Sbjct: 781  EAFLKGVDVHRRTASLIF----------------------GVP--EDQVSSEQRRIAKTI 816

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF + YG +   L+ +  +S  EA+  ++ ++   + + ++ +   +E+    +  T+LG
Sbjct: 817  NFGVMYGMSAFRLSNELGISRTEAQTFINTYFTTYKGIRSFIDTTIQETERTGYSQTILG 876

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S  ++++   ER AINTP+QGSAAD+   AM+ + +  R K    ++LLQV
Sbjct: 877  RRRYIPTINSRNKTEKAAAERVAINTPIQGSAADIVKLAMIRLDRALRKKGNPAQMLLQV 936


>gi|430762992|ref|YP_007218849.1| DNA polymerase I [Thioalkalivibrio nitratireducens DSM 14787]
 gi|430012616|gb|AGA35368.1| DNA polymerase I [Thioalkalivibrio nitratireducens DSM 14787]
          Length = 902

 Score =  159 bits (403), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 98/258 (37%), Positives = 144/258 (55%), Gaps = 28/258 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +  + GRVH S +     TGRLS+  PNLQN P    +  +IRQAFIA PG  L+ ADY 
Sbjct: 622  IHPETGRVHTSYHQAVAATGRLSSSDPNLQNIPVRTDEGRRIRQAFIAEPGQVLLAADYS 681

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  + +L+AF AG D H  TA  ++      +E   V     G D     
Sbjct: 682  QIELRIMAHLSRDRGLLEAFAAGEDIHRATAAEVF-----GLEPASV-----GPD----- 726

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                    +RR AK +NF + YG +  GLAR+  +   +A++ +D ++     V  + E 
Sbjct: 727  --------QRRAAKAINFGLIYGMSAFGLARNLGIEQSQAREYIDRYFARYPGVKDYMER 778

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K+++R   +V TL GR    P I S   ++R   ER AIN P+QG+AAD+   AML+++
Sbjct: 779  AKEQARDQGYVETLFGRRLYLPEIGSRNPARRAQSERVAINAPMQGTAADIIKRAMLKVA 838

Query: 1056 KNARLKE--LGWKLLLQV 1071
              ARL+E  L  ++++QV
Sbjct: 839  --ARLEEGVLHARMIMQV 854


>gi|333376898|ref|ZP_08468634.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM 22836]
 gi|332886111|gb|EGK06355.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM 22836]
          Length = 933

 Score =  159 bits (403), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 153/301 (50%), Gaps = 35/301 (11%)

Query: 779  FATEQEAREACD----AISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+       ++ + E   +  L+S +I  LPL    V  K+G++H S N   
Sbjct: 612  YVTSEETLESIKNTHPIVNKILEYRGLKKLLSTYIDALPLL---VEPKDGKIHTSFNQTV 668

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  +    +IR++FIA  G     ADY Q+ELRI+AHL+   SM
Sbjct: 669  TATGRLSSTNPNLQNIPIRDAQGREIRKSFIADEGCLFFSADYSQIELRIMAHLSQDPSM 728

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASE-RRKAKM 950
            ++AF +G D H+ TA  +Y                         L  D   S+ RRKAK 
Sbjct: 729  VEAFNSGEDIHAATAAKIYK------------------------LKIDEVTSDMRRKAKT 764

Query: 951  LNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLL 1010
             NF I YG +  GLA    +   EAK+ +D ++    +V  + +    ++R   +V T+ 
Sbjct: 765  ANFGIIYGISVFGLAERLTIPRGEAKELIDGYFETYPKVKEYMDKCITDAREKTYVETVF 824

Query: 1011 GRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQ 1070
            GR R  P I S   + R + ER AIN P+QGSAAD+   AM  I K    + +  K++LQ
Sbjct: 825  GRKRYLPDINSRNATVRGYAERNAINAPIQGSAADIIKVAMNNIFKRFEKENIKSKMILQ 884

Query: 1071 V 1071
            V
Sbjct: 885  V 885


>gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 996

 Score =  159 bits (403), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 108/291 (37%), Positives = 146/291 (50%), Gaps = 25/291 (8%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
            E  A E  D    + +   +  L S +   L G  V+ + GRVH S  +  T TGRLS+ 
Sbjct: 678  EDLANEGNDFARRILDWRQLSKLKSTYTDALPGF-VNKETGRVHTSYALAATTTGRLSSS 736

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
             PNLQN P   +   KIR+AF+A PG+ LI ADY Q+ELR+LAH+A+   +  AF  G D
Sbjct: 737  DPNLQNIPVRNEAGRKIRKAFVASPGHVLISADYSQIELRLLAHIADIPQLKKAFADGID 796

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  M+                       VP+ KD     RR+AK +NF I YG +
Sbjct: 797  IHAMTASEMFG----------------------VPV-KDMPPEVRRRAKAINFGIIYGIS 833

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLA    +  EEA   +  ++     +  + EA KK  R    V T+ GR   FP I 
Sbjct: 834  AFGLANQLSIPREEAGAYIKRYFERFPGIRDYMEATKKLVREKGAVTTIFGRVCHFPRIG 893

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            S   S R   ERAAIN P+QG+AAD+   AM+ +      + L  ++LLQV
Sbjct: 894  SANASDRAFYERAAINAPIQGAAADIIRRAMVRMDDALASEGLKAQMLLQV 944


>gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
 gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
          Length = 940

 Score =  159 bits (403), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 137/257 (53%), Gaps = 24/257 (9%)

Query: 816  NVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
            ++  K GRVH S ++ +T TGRLS+  PNLQN P   +D  KIR+AFI   GN LI ADY
Sbjct: 655  SIHPKTGRVHTSFSLASTTTGRLSSNDPNLQNIPIRTEDGRKIREAFIPEDGNVLISADY 714

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A    +++AF  G D H+ TA  ++                       V
Sbjct: 715  SQIELRLLAHIAEIGPLIEAFHQGLDIHAMTAAEVF----------------------GV 752

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            P L+    S RR+AK +NF I YG +  GLAR+  +  +EA   +  ++     +  + +
Sbjct: 753  P-LEGMDPSIRRQAKAINFGIIYGISAFGLARNLGIGRDEASLFIKRYFERFPGIKAYMD 811

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + +R+  +V TL GR    P IK+   + R   ER AIN P+QGSAAD+   AM+ +
Sbjct: 812  ETIEGARVHGYVETLFGRRSHTPNIKAKQPNIRMGAERQAINAPIQGSAADIVKRAMIRV 871

Query: 1055 SKNARLKELGWKLLLQV 1071
                    L  K+LLQV
Sbjct: 872  PAALAAHRLSAKMLLQV 888


>gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
            25015]
 gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
            25015]
          Length = 896

 Score =  159 bits (403), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/236 (38%), Positives = 131/236 (55%), Gaps = 24/236 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            NGRVH S N   T TGRLS+  PNLQN P    +  KIRQAFIA     ++ ADY Q+EL
Sbjct: 619  NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIRQAFIAEQEFCVVAADYSQIEL 678

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K++L AF  G D HS TA  +     + V + Q                  
Sbjct: 679  RIMAHLSKDKNLLKAFNQGLDIHSATAAEVLGISLDMVTSEQ------------------ 720

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RR+AK +NF + YG +  GLA+  ++   EA++ +D+++N    V  +    K+ 
Sbjct: 721  -----RRRAKAINFGLIYGMSAFGLAKQLEIPRGEAQEYIDVYFNRYPSVKEYMTTAKEF 775

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            ++ + +V T+LGR    P I S    QRN  ERAAIN P+QG+AAD+   AM++++
Sbjct: 776  AKQNGYVETILGRRLYLPDISSKNVIQRNAAERAAINAPMQGTAADIIKKAMIDVN 831



 Score = 49.3 bits (116), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 96/248 (38%), Gaps = 60/248 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L+   P F D    KV HN+ FD  +L  YG+K+     DTM MA +  SS    G + 
Sbjct: 370 VLDSLKPVFVDSQKSKVAHNFKFDEKILSKYGVKIVNQVNDTMIMAYVLKSS----GKHD 425

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+ +   +  +  AY        T  G           GR +L  D           
Sbjct: 426 MDSLSKEH--LGIEPIAY-------TTLAG----------TGRNQLTLDQ--------ID 458

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
           +E++ +        Y+A D+  T +LY    K L +            + ++  Y     
Sbjct: 459 IEKVAK--------YAAEDADITFRLYNHFLKMLKD-----------DEVLYSLYSNVEM 499

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
           P   IL  ME  G+ +D   L         EQ A +    K     C D   +  N+ S 
Sbjct: 500 PLTIILNNMEKVGVKIDAAKL--------IEQSANLEDSIKELEIKCYDLAGQEFNLSSP 551

Query: 662 TQLRQLLF 669
            QLR++LF
Sbjct: 552 VQLREILF 559


>gi|337754632|ref|YP_004647143.1| DNA polymerase I [Francisella sp. TX077308]
 gi|336446237|gb|AEI35543.1| DNA polymerase I [Francisella sp. TX077308]
          Length = 896

 Score =  159 bits (403), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/236 (38%), Positives = 133/236 (56%), Gaps = 24/236 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            NGRVH S N   T TGRLS+  PNLQN P    +  KIRQAFIA     ++ ADY Q+EL
Sbjct: 619  NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIRQAFIAENDFCVVAADYSQIEL 678

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K++L AF  G D HS TA  +       +  G                L +
Sbjct: 679  RIMAHLSKDKNLLKAFNQGLDIHSATAAEV-------LGIG----------------LDE 715

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
              + +RR+AK +NF + YG +  GLA+  ++   EA++ +D+++N    V  +    K+ 
Sbjct: 716  VTSEQRRRAKAINFGLIYGMSAFGLAKQLEIPRAEAQEYIDVYFNRYPSVKEYMTTAKEF 775

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            ++ + +V T+LGR    P I +    QRN  ERAA+N P+QG+AAD+   AM++++
Sbjct: 776  AKQNGYVETILGRRLYLPEISAKNAIQRNAAERAAVNAPMQGTAADIIKKAMIDVN 831



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 98/248 (39%), Gaps = 60/248 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L+   P F D    KV HN+ FD  VL  YG+K+     DTM MA +  SS    G + 
Sbjct: 370 VLDSLKPIFVDSQKSKVAHNFKFDEKVLSKYGVKIVNLVNDTMIMAYVLKSS----GKHD 425

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+ +   +  +  AY        T  G           GR +L  D           
Sbjct: 426 MDSLSKEH--LGIEPIAY-------TTLAG----------TGRNQLILDQ--------ID 458

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
           +E++ +        Y+A D+  T +LY    K L +            + ++  Y +   
Sbjct: 459 IEKVAK--------YAAEDADITFRLYNHFLKMLKD-----------DEVLYSLYSKVEM 499

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
           P   IL  ME  G+ +D + L         EQ A +    K     C D   +  N+ S 
Sbjct: 500 PLTIILNNMEKTGVKIDADKL--------IEQSANLEDSIKELEVKCYDLAGQEFNLASP 551

Query: 662 TQLRQLLF 669
            QLR++LF
Sbjct: 552 VQLREILF 559


>gi|404317021|ref|ZP_10964954.1| DNA polymerase I [Ochrobactrum anthropi CTS-325]
          Length = 976

 Score =  159 bits (403), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/292 (35%), Positives = 146/292 (50%), Gaps = 28/292 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN L+ ADY Q+ELR+
Sbjct: 698  RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLVSADYSQIELRV 757

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 758  LAHVADIAQLKQAFADGMDIHAMTASEMF----------------------GVPV--EGM 793

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + EA K  +
Sbjct: 794  PSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFA 853

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I++     R   ERAAIN P+QGSAAD+   AM+ +      
Sbjct: 854  RENGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGSAADIIRRAMIRMEDALAE 913

Query: 1061 KELGWKLLLQVL--FFFSFSFFSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
            + L  ++LLQV     F      +   +     ++ NA  P    +  LH D
Sbjct: 914  QNLAARMLLQVHDELIFEVPDSEVEKTIPVVRHIMENAAMPAVSLAVPLHVD 965



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 126/319 (39%), Gaps = 88/319 (27%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGP--------EADFGNGKSCIWVDLLDGG 420
           V A DTE   +D  Q       E++ FS+   P        +   G G      DLL GG
Sbjct: 388 VLAFDTETTSLDPMQ------AELVGFSLALAPGRAAYIPLQHKSGAG------DLLGGG 435

Query: 421 ---GRDLLNE----FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
              G+  L+E         ED S+ K+  N  +D  V+  +G+    F  DTM ++ + D
Sbjct: 436 MVEGQIPLDEALAALKIVLEDASVLKIAQNMKYDWLVMRRHGINTVSFD-DTMLISYVLD 494

Query: 474 SSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKK 531
           +     G + ++ L+                       E ++G   I  KD+ G      
Sbjct: 495 AG---TGSHGMDPLS-----------------------ERWLGHTPIPYKDVAG------ 522

Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
              +GK +    + +L R       +Y+A D+  TL+L++ LK +L              
Sbjct: 523 ---SGKSAVSFDMVDLDRA-----TAYAAEDADVTLRLWQVLKPRL------------AA 562

Query: 592 KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCP 651
           + +   Y+   +P  ++L +ME  G+ VDR+ LS +         A  +   + A +   
Sbjct: 563 EGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYELAGER-- 620

Query: 652 DAKYMNVGSDTQLRQLLFG 670
                N+GS  QL  +LFG
Sbjct: 621 ----FNIGSPKQLGDILFG 635


>gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum]
          Length = 831

 Score =  159 bits (403), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 159/297 (53%), Gaps = 33/297 (11%)

Query: 780  ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLNINTE-T 834
            +T++EA E   A+  L ++      +   +S ++LP++     G +GR+H   N     T
Sbjct: 513  STDEEALEGLAALHPLPKLILSFRQLRKFLSTYLLPMEEGR--GSDGRLHGQFNQTVAAT 570

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+ RPNLQN PA  +    +R+ F+A  G  L+ ADY Q+ELR+LAH +    + +A
Sbjct: 571  GRLSSSRPNLQNIPARTELGLLVRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREA 630

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F  G D H+RTA  ++                 GE   PV       +  RR+AK +NF 
Sbjct: 631  FSRGEDIHARTAALLF-----------------GE---PV------TSESRRRAKTINFG 664

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            I YG +   L++D  V   EA+  +D +++    V  + E  ++E+R    + TLLGR R
Sbjct: 665  ILYGMSAYSLSQDLGVEPAEAQGIIDRYFSVVAGVGPYFEKIREEARRTGRIRTLLGRIR 724

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              P I+S  R+ R + ER A+N+ +QGSAAD+   AM+++S+      L  +LLLQV
Sbjct: 725  PIPEIRSDNRNVREYGERMAVNSVLQGSAADLVKKAMVDLSQAVASSGLKARLLLQV 781


>gi|411011289|ref|ZP_11387618.1| DNA polymerase I [Aeromonas aquariorum AAK1]
          Length = 916

 Score =  159 bits (403), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 156/308 (50%), Gaps = 35/308 (11%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 591  KGAPSTAEEVLA---ELAETYELPRLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 644

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 645  SYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCTGYKLVAADYSQIELRIMAHL 704

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASE- 944
            +  K +L AF  G D H  TA  ++      VE                    DA  S+ 
Sbjct: 705  SGDKGLLTAFAEGKDIHKATAAEVF-----GVEL-------------------DAVTSDM 740

Query: 945  RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDN 1004
            RR AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    
Sbjct: 741  RRSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAEAQG 800

Query: 1005 HVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKEL 1063
            +V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++ 
Sbjct: 801  YVETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDGWIRGIEDQ 860

Query: 1064 GWKLLLQV 1071
              ++L+QV
Sbjct: 861  SIRMLMQV 868



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 118/303 (38%), Gaps = 64/303 (21%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA--DFGNGKSCIWVDLLDGGGRDLLN 426
           + A DTE   +D  +   V     + F+I  G  A   FG+      V L +     +L 
Sbjct: 338 LFAFDTETTSLDYMEARIVG----VSFAIEPGKAAYVPFGHDYLGAPVQLTEAV---VLG 390

Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
           +  P  EDP+  KV  N  +D +VL N+G+++ G   DTM  + + +S            
Sbjct: 391 KLKPLLEDPARLKVGQNLKYDRNVLLNHGIELQGIAYDTMLESYVLNS------------ 438

Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
            T  R  M    + Y    +           IS +DI G+   +   +  ++   AP   
Sbjct: 439 -TASRHDMDSLARRYLNAET-----------ISFEDIAGKGVKQLTFNQIELEQAAP--- 483

Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606
                      Y+A D+  TL+L+++L        W   GK      +   + E   P  
Sbjct: 484 -----------YAAEDADITLRLHQAL--------W---GKLAAEPGLAKVFSEIELPLL 521

Query: 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQ 666
            +L +ME  G  ++ + L +  +    E E  +    K A  H    +  N+ S  QL +
Sbjct: 522 PVLARMERLGTTIEPQLLHQQSQ----EIEVRLAELEKQA--HELAGQEFNLSSPKQLGE 575

Query: 667 LLF 669
           +LF
Sbjct: 576 ILF 578


>gi|423230541|ref|ZP_17216945.1| DNA polymerase I [Bacteroides dorei CL02T00C15]
 gi|423244250|ref|ZP_17225325.1| DNA polymerase I [Bacteroides dorei CL02T12C06]
 gi|392630685|gb|EIY24671.1| DNA polymerase I [Bacteroides dorei CL02T00C15]
 gi|392642431|gb|EIY36197.1| DNA polymerase I [Bacteroides dorei CL02T12C06]
          Length = 971

 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 156/309 (50%), Gaps = 33/309 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQV 923

Query: 1072 LFFFSFSFF 1080
                +FS  
Sbjct: 924  HDELNFSVL 932


>gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
 gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
          Length = 971

 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 156/309 (50%), Gaps = 33/309 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQV 923

Query: 1072 LFFFSFSFF 1080
                +FS  
Sbjct: 924  HDELNFSVL 932


>gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
 gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
          Length = 971

 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 156/309 (50%), Gaps = 33/309 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQV 923

Query: 1072 LFFFSFSFF 1080
                +FS  
Sbjct: 924  HDELNFSVL 932


>gi|345514278|ref|ZP_08793791.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
 gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
          Length = 971

 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 156/309 (50%), Gaps = 33/309 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQV 923

Query: 1072 LFFFSFSFF 1080
                +FS  
Sbjct: 924  HDELNFSVL 932


>gi|401564732|ref|ZP_10805603.1| DNA-directed DNA polymerase [Selenomonas sp. FOBRC6]
 gi|400188555|gb|EJO22713.1| DNA-directed DNA polymerase [Selenomonas sp. FOBRC6]
          Length = 877

 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 96/260 (36%), Positives = 141/260 (54%), Gaps = 25/260 (9%)

Query: 814  GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIV 871
            G+ +    GRVH S N   T TGRLS+  PNLQN P   ++   +R  F    G ++L+ 
Sbjct: 593  GALIRPATGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRAVRALFEPGAGYDALLS 652

Query: 872  ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDK 931
            ADY Q+ELRILAH++  ++M+DAF+ G D H+RTA  ++         G  L E  GE  
Sbjct: 653  ADYSQIELRILAHMSGDETMIDAFRTGQDIHARTASEVF---------GVPLAEVTGE-- 701

Query: 932  PPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLT 991
                        +RR+AK +NF I YG +  GL+RD  +S +EA   ++ ++     V  
Sbjct: 702  ------------QRRRAKAVNFGIVYGLSDFGLSRDLGISRKEAGGYIERYFERYHGVRA 749

Query: 992  WQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAM 1051
            + +    ++  + +V TL GR R  PAI S    QR+  ER A+NTP+QG+AAD+   AM
Sbjct: 750  FLDKMVSDAHANGYVTTLYGRRRDLPAINSRNFMQRSFAERMAMNTPIQGTAADLIKIAM 809

Query: 1052 LEISKNARLKELGWKLLLQV 1071
            +      R   +  ++LLQV
Sbjct: 810  IRAHDALRAAGVQSRILLQV 829


>gi|325970645|ref|YP_004246836.1| DNA polymerase I [Sphaerochaeta globus str. Buddy]
 gi|324025883|gb|ADY12642.1| DNA polymerase I [Sphaerochaeta globus str. Buddy]
          Length = 948

 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/289 (35%), Positives = 149/289 (51%), Gaps = 29/289 (10%)

Query: 786  REACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSL-NINTETGRLSARRP 842
            R+    +  + +  +++ L + +I  LPLQ   ++ K  R+H S     TETGRLS + P
Sbjct: 638  RDDYPEVELILQYRTLNKLKTTYIDKLPLQ---INEKTHRIHPSFAQTGTETGRLSCKDP 694

Query: 843  NLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFH 902
            NLQN P   ++  +IR AF+   G+  + ADY Q+EL +LAH+A+   +  AF AG D H
Sbjct: 695  NLQNIPVRTEEGRRIRSAFVPQAGHVFLSADYSQIELVVLAHMADDPGLKGAFAAGIDVH 754

Query: 903  SRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPV 962
            S TA  ++                   D P    L      +RR AK +NF + YG    
Sbjct: 755  SSTASLIF-------------------DVP----LDQVTPVQRRIAKTINFGVMYGMGTH 791

Query: 963  GLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSL 1022
             LA D K+   EAK+ +D ++     V ++ EA K  S+    V TLLG  R    I S 
Sbjct: 792  SLAMDLKIPHSEAKQFIDQYFERYSSVRSFVEATKTMSQQVGSVSTLLGHVRTITEINSR 851

Query: 1023 TRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +  +R   ER A+NT +QGSAAD+   AML +    + K+LG +LLLQ+
Sbjct: 852  SAVERAKAERIAVNTVIQGSAADIVKLAMLRVDSLLKQKKLGARLLLQI 900


>gi|449115967|ref|ZP_21752427.1| DNA polymerase I [Treponema denticola H-22]
 gi|448955453|gb|EMB36220.1| DNA polymerase I [Treponema denticola H-22]
          Length = 944

 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 141/256 (55%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 664  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 724  QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF-----AVD----------------- 761

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 762  -IKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAQ 820

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V TL+GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 821  VCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 880

Query: 1056 KNARLKELGWKLLLQV 1071
            K  + ++L   +LLQV
Sbjct: 881  KALKKQKLDASILLQV 896


>gi|399052867|ref|ZP_10742074.1| DNA polymerase I [Brevibacillus sp. CF112]
 gi|433545911|ref|ZP_20502252.1| DNA polymerase I [Brevibacillus agri BAB-2500]
 gi|398049239|gb|EJL41670.1| DNA polymerase I [Brevibacillus sp. CF112]
 gi|432182800|gb|ELK40360.1| DNA polymerase I [Brevibacillus agri BAB-2500]
          Length = 883

 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 157/282 (55%), Gaps = 26/282 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            I A+     +  L S +I  L    +  K  +VH   N   T TGRLS+  PNLQN P  
Sbjct: 578  IDAILNFRQLGKLRSTYIEGLT-KEIHTKTSKVHTLYNQATTATGRLSSTEPNLQNIPIR 636

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  KIR+AFI +  G  ++ ADY Q+ELRILAH++  ++++DAF+ G D H+RTAM++
Sbjct: 637  MEEGRKIREAFIPSEDGWYMLAADYSQIELRILAHISGDENLIDAFRKGMDIHTRTAMDV 696

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +      V  G+V                   +  RR+AK +NF I YG +  GL+++  
Sbjct: 697  F-----GVSEGEVT------------------SLMRRQAKAVNFGIVYGISDYGLSQNLN 733

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ +EA + ++ ++     V  W +   ++++ D +V TLL R R  P I+S   + R+ 
Sbjct: 734  ITRKEAAEFIERYFAVFSGVKRWMDEIVQQAKQDGYVTTLLHRRRYLPDIRSSNFNLRSF 793

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             ER A+NTP+QG+AADV   AM+ + ++   K L  ++LLQV
Sbjct: 794  AERTAMNTPIQGTAADVIKLAMIRMQESLEQKGLSSRMLLQV 835


>gi|422342121|ref|ZP_16423061.1| DNA polymerase I [Treponema denticola F0402]
 gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402]
          Length = 944

 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 141/256 (55%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 664  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 724  QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF-----AVD----------------- 761

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 762  -IKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAQ 820

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V TL+GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 821  VCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 880

Query: 1056 KNARLKELGWKLLLQV 1071
            K  + ++L   +LLQV
Sbjct: 881  KALKKQKLDASILLQV 896


>gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna Polymerase
            I From Thermus Aquaticus
          Length = 538

 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 155/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 223  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 281

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 282  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 341

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 342  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 378

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 379  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 438

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 439  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLEEMGARMLLQV 489


>gi|449107484|ref|ZP_21744138.1| DNA polymerase I [Treponema denticola ASLM]
 gi|451969176|ref|ZP_21922405.1| DNA polymerase I [Treponema denticola US-Trep]
 gi|448961684|gb|EMB42379.1| DNA polymerase I [Treponema denticola ASLM]
 gi|451702044|gb|EMD56478.1| DNA polymerase I [Treponema denticola US-Trep]
          Length = 944

 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 141/256 (55%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 664  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 724  QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF-----AVD----------------- 761

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 762  -IKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAQ 820

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V TL+GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 821  VCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 880

Query: 1056 KNARLKELGWKLLLQV 1071
            K  + ++L   +LLQV
Sbjct: 881  KALKKQKLDASILLQV 896


>gi|423313082|ref|ZP_17291018.1| DNA polymerase I [Bacteroides vulgatus CL09T03C04]
 gi|392686296|gb|EIY79602.1| DNA polymerase I [Bacteroides vulgatus CL09T03C04]
          Length = 971

 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 156/309 (50%), Gaps = 33/309 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQV 923

Query: 1072 LFFFSFSFF 1080
                +FS  
Sbjct: 924  HDELNFSVL 932



 Score = 43.9 bits (102), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 18/132 (13%)

Query: 342 YSNVMVVDN-------VSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
           YSN+  +DN       V   +K   +L N     + + DTE    D     P+   E++ 
Sbjct: 366 YSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDTETTGTD-----PIT-AELVG 419

Query: 395 FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
            S        F      + V       + ++NEF P FE   + KV  N  +D  VL NY
Sbjct: 420 MSFSYAENQAF-----YVPVPADRAEAQKIVNEFRPAFEKEGVLKVGQNIKYDMLVLGNY 474

Query: 455 GLKVSGFHADTM 466
           G +V G   DTM
Sbjct: 475 GTEVRGPLFDTM 486


>gi|449131373|ref|ZP_21767589.1| DNA polymerase I [Treponema denticola SP37]
 gi|448940206|gb|EMB21117.1| DNA polymerase I [Treponema denticola SP37]
          Length = 944

 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 141/256 (55%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 664  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 724  QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF-----AVD----------------- 761

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 762  -IKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAQ 820

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V TL+GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 821  VCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 880

Query: 1056 KNARLKELGWKLLLQV 1071
            K  + ++L   +LLQV
Sbjct: 881  KALKKQKLDASILLQV 896


>gi|333382951|ref|ZP_08474616.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC
            BAA-286]
 gi|332828281|gb|EGK00993.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 931

 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 149/294 (50%), Gaps = 29/294 (9%)

Query: 781  TEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN-TETGRL 837
            T +  ++A   +  + E   +  L+S +I  LPL    VS  + ++H S N   T TGRL
Sbjct: 616  TLESMKDAHSIVGKILEYRGLKKLLSTYIDALPLL---VSPLDDKLHTSYNQTVTATGRL 672

Query: 838  SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
            S+  PNLQN P  +    +IR+AFIA        ADY Q+ELRI+AHL+   +M+DAF +
Sbjct: 673  SSSNPNLQNIPIRDAQGKEIRKAFIADEACIFFSADYSQIELRIMAHLSQDPTMIDAFNS 732

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TA  +Y                    K P+    +     RRKAK  NF I Y
Sbjct: 733  GEDIHAATAAKIY--------------------KIPI---SEVTGDMRRKAKTANFGIIY 769

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GLA    +   EAK+ +D ++    +V  + +     +R +N+V T+ GR R  P
Sbjct: 770  GISVFGLAERLSIPRGEAKELIDGYFATYPKVKEYMDKSISVARTNNYVETVFGRKRYLP 829

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             I S   + R + ER AIN P+QGSAAD+   AM  I      + +  K++LQV
Sbjct: 830  DINSRNTTVRGYAERNAINAPIQGSAADIIKVAMNRIFDRFERENIKSKMILQV 883


>gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
 gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
          Length = 971

 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 156/309 (50%), Gaps = 33/309 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQV 923

Query: 1072 LFFFSFSFF 1080
                +FS  
Sbjct: 924  HDELNFSVL 932



 Score = 43.9 bits (102), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 18/132 (13%)

Query: 342 YSNVMVVDN-------VSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
           YSN+  +DN       V   +K   +L N     + + DTE    D     P+   E++ 
Sbjct: 366 YSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDTETTGTD-----PIT-AELVG 419

Query: 395 FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
            S        F      + V       + ++NEF P FE   + KV  N  +D  VL NY
Sbjct: 420 MSFSYAENQAF-----YVPVPADRAEAQKIVNEFRPAFEKEGVLKVGQNIKYDMLVLGNY 474

Query: 455 GLKVSGFHADTM 466
           G +V G   DTM
Sbjct: 475 GTEVRGPLFDTM 486


>gi|429737101|ref|ZP_19270974.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 138 str.
            F0429]
 gi|429153541|gb|EKX96323.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 138 str.
            F0429]
          Length = 877

 Score =  159 bits (402), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 96/260 (36%), Positives = 141/260 (54%), Gaps = 25/260 (9%)

Query: 814  GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIV 871
            G+ +    GRVH S N   T TGRLS+  PNLQN P   ++   +R  F    G ++L+ 
Sbjct: 593  GALIRPATGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRAVRALFEPGAGYDALLS 652

Query: 872  ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDK 931
            ADY Q+ELRILAH++  ++M+DAF+ G D H+RTA  ++         G  L E  GE  
Sbjct: 653  ADYSQIELRILAHMSGDETMIDAFRTGQDIHARTASEVF---------GVPLAEVTGE-- 701

Query: 932  PPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLT 991
                        +RR+AK +NF I YG +  GL+RD  +S +EA   ++ ++     V  
Sbjct: 702  ------------QRRRAKAVNFGIVYGLSDFGLSRDLGISRKEAGGYIERYFERYHGVRA 749

Query: 992  WQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAM 1051
            + +    ++  + +V TL GR R  PAI S    QR+  ER A+NTP+QG+AAD+   AM
Sbjct: 750  FLDKMVSDAHANGYVTTLYGRRRDLPAINSRNFMQRSFAERMAMNTPIQGTAADLIKIAM 809

Query: 1052 LEISKNARLKELGWKLLLQV 1071
            +      R   +  ++LLQV
Sbjct: 810  IRAHDALRAAGVQSRILLQV 829


>gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
 gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
          Length = 904

 Score =  159 bits (402), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 158/304 (51%), Gaps = 29/304 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            KGA+++ N +        E    I+ + E   ++ L S ++ PL    +   NGR+H + 
Sbjct: 581  KGALSTANSVLEKLSGQHEI---ITDILEYRKMEKLRSTYLEPL--PKLVNANGRIHTNF 635

Query: 829  N-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N + T TGRLS+  PNLQN P       ++R  F A  G  L  ADY Q+ELR+LAH + 
Sbjct: 636  NQLATATGRLSSSGPNLQNIPIRGDQGKRMRACFTAGEGLRLAAADYSQVELRVLAHFSG 695

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
              +++ AF+   D HSRTA  ++                   D+ P     D  + ERR 
Sbjct: 696  DPALVSAFEHDEDIHSRTAALLF-------------------DRDPA----DVTSDERRN 732

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF + YG  P  L+R+  + + EAK+ +  ++ +   +  + ++  ++ R   +V 
Sbjct: 733  AKTINFGLIYGMGPQKLSRELGIKINEAKEFIAKYFEKLDVLKEFYDSVVEQGREKGYVT 792

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            TL GR R  P + S +    +   R AINT +QGSAAD+   AM++++ NA +K LG +L
Sbjct: 793  TLSGRRRLLPELHSTSPQILSQARRQAINTVIQGSAADIIKMAMIKVADNAEIKHLGGRL 852

Query: 1068 LLQV 1071
            +LQ+
Sbjct: 853  ILQI 856


>gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
 gi|423240816|ref|ZP_17221930.1| DNA polymerase I [Bacteroides dorei CL03T12C01]
 gi|212664838|gb|EEB25410.1| DNA-directed DNA polymerase [Bacteroides dorei DSM 17855]
 gi|392643778|gb|EIY37527.1| DNA polymerase I [Bacteroides dorei CL03T12C01]
          Length = 971

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 156/309 (50%), Gaps = 33/309 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQV 923

Query: 1072 LFFFSFSFF 1080
                +FS  
Sbjct: 924  HDELNFSVL 932


>gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
 gi|158450485|gb|EDP27480.1| DNA-directed DNA polymerase [Coprococcus eutactus ATCC 27759]
          Length = 886

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 104/283 (36%), Positives = 157/283 (55%), Gaps = 30/283 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            I+ + E   +  L S + + L GS +S  +GR+H + N   T TGR+S+  PNLQN P  
Sbjct: 583  INDILEYRQLSKLNSTYAIGL-GSFISS-DGRIHGTFNQTITATGRISSTDPNLQNIPMR 640

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
             +    IR+AFI   G   + ADY Q+ELR+LAHL++   M +AF+   D HS TA  ++
Sbjct: 641  MELGRLIRKAFIPQDGFVFVDADYSQVELRVLAHLSDDSVMKNAFQNNIDIHSTTASEVF 700

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                  V   +V            PL       +RR AK +NF I YG +  GL+ D  +
Sbjct: 701  -----GVPIDEV-----------TPL-------QRRHAKAVNFGIVYGISAFGLSEDLGI 737

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
            S +EA   ++ +Y+  + + T+ + + K ++ + +V T+ GR R  P +KS    QR+  
Sbjct: 738  SRKEASDFIEKYYDTYKSIKTYLDGQVKFAKENGYVKTMFGRIRPIPELKSSNFMQRSFG 797

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
            ER A+N+P+QGSAAD+   AML +  N +LKELG K  L+LQ+
Sbjct: 798  ERVAMNSPIQGSAADIIKIAMLHV--NIKLKELGLKSRLILQI 838


>gi|407698276|ref|YP_006823063.1| DNA polymerase I [Alteromonas macleodii str. 'Black Sea 11']
 gi|407247423|gb|AFT76608.1| DNA polymerase I [Alteromonas macleodii str. 'Black Sea 11']
          Length = 929

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 91/247 (36%), Positives = 136/247 (55%), Gaps = 28/247 (11%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S +   T TGRLS+  PNLQN P   ++  ++RQAFI   GN  + ADY 
Sbjct: 648  INHRTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRVRQAFIPREGNKFVAADYS 707

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                       VP
Sbjct: 708  QIELRIMAHLSGDKGLLDAFAHGKDIHKATASEVFG----------------------VP 745

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            L  +    +RR AK +NF + YG +  GL++   +   EA+K +DL++     VL + ++
Sbjct: 746  L-DEVTTEQRRSAKAINFGLIYGMSAFGLSKQLNIPRNEAQKYMDLYFERYPGVLEYMDS 804

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE-- 1053
             ++ ++   +V T+ GR    P IK+   ++R   ERAAIN P+QG+AAD+   AM++  
Sbjct: 805  TRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINAPMQGTAADIIKMAMIKVD 864

Query: 1054 --ISKNA 1058
              I KNA
Sbjct: 865  DWIRKNA 871


>gi|449102534|ref|ZP_21739282.1| DNA polymerase I [Treponema denticola AL-2]
 gi|448966123|gb|EMB46781.1| DNA polymerase I [Treponema denticola AL-2]
          Length = 943

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 141/256 (55%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 663  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 722

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 723  QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF-----AVD----------------- 760

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 761  -IKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAQ 819

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V TL+GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 820  VCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 879

Query: 1056 KNARLKELGWKLLLQV 1071
            K  + ++L   +LLQV
Sbjct: 880  KALKKQKLDASILLQV 895


>gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
            Of Dna Polymerase I From Thermus Aquaticus
 gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
            Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 155/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 225  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 283

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 284  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 343

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 344  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 380

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 381  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 440

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 441  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLEEMGARMLLQV 491


>gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
            From T. Aquaticus Bound To A PrimerTEMPLATE DNA
          Length = 539

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 155/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 224  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 282

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 283  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 342

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 343  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 379

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 380  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 439

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 440  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLEEMGARMLLQV 490


>gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
 gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
          Length = 971

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 156/309 (50%), Gaps = 33/309 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQV 923

Query: 1072 LFFFSFSFF 1080
                +FS  
Sbjct: 924  HDELNFSVL 932



 Score = 43.9 bits (102), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 18/132 (13%)

Query: 342 YSNVMVVDN-------VSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
           YSN+  +DN       V   +K   +L N     + + DTE    D     P+   E++ 
Sbjct: 366 YSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDTETTGTD-----PIT-AELVG 419

Query: 395 FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
            S        F      + V       + ++NEF P FE   + KV  N  +D  VL NY
Sbjct: 420 MSFSYAENQAF-----YVPVPADRAEAQKIVNEFRPAFEKEGVLKVGQNIKYDMLVLGNY 474

Query: 455 GLKVSGFHADTM 466
           G +V G   DTM
Sbjct: 475 GTEVRGPLFDTM 486


>gi|421498484|ref|ZP_15945589.1| polA [Aeromonas media WS]
 gi|407182528|gb|EKE56480.1| polA [Aeromonas media WS]
          Length = 918

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 151/307 (49%), Gaps = 33/307 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  D    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 593  KGAPSTAEEVLA---ELAETYDLPRLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 646

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 647  SYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHL 706

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  + +L AF  G D H  TA  ++     AV T                         R
Sbjct: 707  SGDQGLLTAFAEGKDIHKATAAEVFGVALEAVTTDM-----------------------R 743

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    +
Sbjct: 744  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAEAQGY 803

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R + +  
Sbjct: 804  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMIAVDGWIRGITDGS 863

Query: 1065 WKLLLQV 1071
              +L+QV
Sbjct: 864  IHMLMQV 870



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 123/308 (39%), Gaps = 74/308 (24%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA--DFGNGKSCIWVDLLDGGGRDLLN 426
           + A DTE   +D  +   V     + F+I  G  A   FG+        L +   + +L 
Sbjct: 340 LFAFDTETTSLDYMEARVVG----VSFAIEPGKAAYVPFGHDYLGAPTQLTE---QQVLG 392

Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
           +  P  EDP+  KV  N  +D +VL+N+G+ + G   DTM  + + +S+           
Sbjct: 393 KLKPLLEDPARLKVGQNLKYDRNVLQNHGIDLQGIAFDTMLESYVLNST----------- 441

Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
                        A + DM    +    +  IS +DI G+   +   +  ++   AP   
Sbjct: 442 -------------ASRHDMDSLASKYLGVETISFEDIAGKGAKQLTFNQIELEQAAP--- 485

Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606
                      Y+A D+  TL+L+++L  +L ++             +   + E   P  
Sbjct: 486 -----------YAAEDADITLRLHQTLWGELSKLP-----------ELAKVFTEIELPLL 523

Query: 607 EILVKMETEGMLVDREYL----SEIE-KVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            +L +ME  G  +D + L     EIE ++A  E++A           H    +  N+ S 
Sbjct: 524 PVLARMELLGTTIDPKLLHQQSQEIEVRLAELERQA-----------HELAGQEFNLSSP 572

Query: 662 TQLRQLLF 669
            QL ++LF
Sbjct: 573 KQLGEILF 580


>gi|451981579|ref|ZP_21929931.1| DNA polymerase I [Nitrospina gracilis 3/211]
 gi|451761252|emb|CCQ91195.1| DNA polymerase I [Nitrospina gracilis 3/211]
          Length = 900

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 100/267 (37%), Positives = 145/267 (54%), Gaps = 25/267 (9%)

Query: 806  SNFILPLQGSNVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
            S ++  LQG  V  + GR+H S N     TGRLS+  PNLQN P   +   +IR+AF+A 
Sbjct: 610  STYVDALQG-EVFKETGRIHTSYNQTVAATGRLSSSDPNLQNIPIRSEVGREIRKAFLAD 668

Query: 865  PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLL 924
             G  L+ ADY Q+ELR+LAHL+   +++ AFK   D HSRTA  ++         GQ + 
Sbjct: 669  KGCWLLSADYSQIELRLLAHLSGDPALIRAFKNNEDIHSRTAAEIF---------GQPID 719

Query: 925  EWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYN 984
            +   E               RR AK +NF I YG +  GL+R  K++ +EAK  +D +++
Sbjct: 720  QVDPEG--------------RRMAKAVNFGIVYGLSAYGLSRQLKITPKEAKTFIDQYFD 765

Query: 985  ERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAA 1044
              + V T+ +   + +R + +  T++ R R  P I S  R  R   ER AIN+PVQGSAA
Sbjct: 766  LYKNVKTFMDETIEMARHNGYTKTMMNRRRYMPDINSKNRQVREAAERTAINSPVQGSAA 825

Query: 1045 DVAMCAMLEISKNARLKELGWKLLLQV 1071
            D    AML I      ++L  +++LQV
Sbjct: 826  DYIKMAMLHIHDKMLKEKLESRMILQV 852



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 51/200 (25%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L++  P  EDP ++K  HN  +D  VL N G+++ G   D+M  + + D SRR+   +S
Sbjct: 376 VLDKLKPLLEDPKLEKYGHNIKYDLIVLHNEGVQLQGIVFDSMLASYVLDPSRRS---HS 432

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           L+ L                                  + F    +K    AG  S    
Sbjct: 433 LDDLA--------------------------------LETFQHTTIKYSDVAGSASKQVG 460

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            +E++ E       Y+A DS  T +L +  +K+L             G+ + + Y+    
Sbjct: 461 FDEVEIERAS---EYAAEDSDVTYRLTRHFEKQL------------KGEDL-ELYETIEL 504

Query: 604 PFGEILVKMETEGMLVDREY 623
           P  E+L +ME  G+L+D ++
Sbjct: 505 PLLEVLAEMELTGVLLDTDH 524


>gi|372277221|ref|ZP_09513257.1| DNA polymerase I [Pantoea sp. SL1_M5]
          Length = 928

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 97/246 (39%), Positives = 134/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + +SG   RVH S +   T TGRLS+  PNLQN P    +  +IRQAF+A  G+ 
Sbjct: 643  LPLMINPISG---RVHTSYHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFVAAKGHR 699

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++         G  L +  G
Sbjct: 700  IVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVF---------GVALDKVSG 750

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 751  E--------------QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 796

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++ +    +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+  
Sbjct: 797  VLRYMENTRQLAASKGYVETLEGRRLWLPDIKSGNAIRRKAAERAAINAPMQGTAADIIK 856

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 857  RAMIAV 862


>gi|373501409|ref|ZP_09591766.1| hypothetical protein HMPREF9140_01884 [Prevotella micans F0438]
 gi|371949065|gb|EHO66939.1| hypothetical protein HMPREF9140_01884 [Prevotella micans F0438]
          Length = 920

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 152/305 (49%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
            + T +E  ++  A   + E       +  L+S +I  L    ++ + GR+H S N   T 
Sbjct: 599  YVTNEEVLQSLKAKHPIVENILAYRGMKKLLSTYIDALPKL-INKRTGRIHTSFNQAATS 657

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P    D  +IR+ FI   G     ADY Q+ELRI+AHL+   +M++
Sbjct: 658  TGRLSSSEPNLQNIPVRTDDGKEIRKCFIPEKGCLFFSADYSQIELRIMAHLSEDPNMIE 717

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF+   D H  TA  +                WH         + D   ++R+KAK  NF
Sbjct: 718  AFRNNIDIHKVTAAKI----------------WHEN-------IDDVTETQRKKAKQANF 754

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG T  GLA+   +S  EA+K +D ++N   +V  + +   K++R   +V TL  R 
Sbjct: 755  GIIYGITTFGLAQRMGISNLEARKIIDGYFNTYPKVREFIDKSIKDARKKGYVETLFNRK 814

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S   + R   ER AIN P+QGS AD+   AM+ I +    + +  K++LQV  
Sbjct: 815  RYLPDINSHNATVRGFAERNAINAPIQGSEADIIKVAMINIQQRFERENIRSKMILQVHD 874

Query: 1074 FFSFS 1078
              +FS
Sbjct: 875  ELNFS 879



 Score = 47.8 bits (112), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 89/243 (36%), Gaps = 56/243 (23%)

Query: 428 FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEAL 487
           F P +E+  I+K+  N  +D  VL NYG+ + G   DTM    +     R    Y  E L
Sbjct: 397 FKPLYENEEIEKIGQNIKYDYEVLRNYGITIRGEFFDTMIAHYVIQPELRHNMDYLAETL 456

Query: 488 TGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
            G +                          I + ++ G     K  +   + +++P E  
Sbjct: 457 LGYK-------------------------TIHIDELIG----PKGKNQKNMRSLSPTE-- 485

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
                     Y+  D+  TL+L   LK KL     K  G         + +++   P   
Sbjct: 486 -------VCDYACEDADITLRLKNVLKDKL-----KKSGAD-------ELFRKIEMPLIP 526

Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
           +L +ME  G+ +D E L+E  ++             + A +        N+ S  Q+  +
Sbjct: 527 VLAEMEINGVCLDTEALNETSRIFNERMNGYEQNIYELAGES------FNISSPRQVGNI 580

Query: 668 LFG 670
           LFG
Sbjct: 581 LFG 583


>gi|352107004|ref|ZP_08961725.1| DNA polymerase I [Halomonas sp. HAL1]
 gi|350597455|gb|EHA13594.1| DNA polymerase I [Halomonas sp. HAL1]
          Length = 929

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 93/252 (36%), Positives = 138/252 (54%), Gaps = 24/252 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH S +   T TGRLS+  PNLQN P   ++  KIRQAFIA PG  ++ ADY Q+EL
Sbjct: 653  TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFIARPGYRIVAADYSQIEL 712

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K +L+AF  G D H+ TA  ++         G  L +  G+          
Sbjct: 713  RIMAHLSEDKGLLEAFAEGRDIHTATAAEVF---------GTSLEKVSGD---------- 753

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                +RR AK +NF + YG +  GLAR  ++   +A+  +D +++    V  + E  + +
Sbjct: 754  ----QRRSAKAINFGLIYGMSAWGLARQLRIERNQAQTYIDRYFDRYPGVARYMERIRSQ 809

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +  D  V T+LGR    P I+S  R++R   ER AIN P+QG+AAD+   AM+++     
Sbjct: 810  AAEDGFVETVLGRRLYLPEIQSQNRNRRQGAERTAINAPMQGTAADIIKQAMIDVDAWLE 869

Query: 1060 LKELGWKLLLQV 1071
              E    +++QV
Sbjct: 870  EGEFDALMVMQV 881


>gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
 gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase
          Length = 543

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 155/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 228  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 286

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 287  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 346

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 347  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 383

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 384  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 443

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 444  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLEEMGARMLLQV 494


>gi|390437335|ref|ZP_10225873.1| DNA polymerase I [Pantoea agglomerans IG1]
          Length = 928

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 97/246 (39%), Positives = 134/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + +SG   RVH S +   T TGRLS+  PNLQN P    +  +IRQAF+A  G+ 
Sbjct: 643  LPLMINPISG---RVHTSYHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFVAAKGHR 699

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++         G  L +  G
Sbjct: 700  IVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVF---------GVALDKVSG 750

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 751  E--------------QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 796

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++ +    +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+  
Sbjct: 797  VLRYMENTRQLAASKGYVETLEGRRLWLPDIKSGNAIRRKAAERAAINAPMQGTAADIIK 856

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 857  RAMIAV 862


>gi|342216871|ref|ZP_08709518.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 375 str.
            F0436]
 gi|341587761|gb|EGS31161.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 375 str.
            F0436]
          Length = 437

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/273 (34%), Positives = 149/273 (54%), Gaps = 26/273 (9%)

Query: 800  SIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIR 858
            S+  L S ++  L  +++ G++GR+H +    NT TGR+S+  PNLQN P   K+   IR
Sbjct: 142  SLTKLKSTYLESL--ADLIGEDGRIHSTFKQTNTATGRISSNDPNLQNIPVRTKEGRLIR 199

Query: 859  QAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVE 918
            +AF+A  G+  + ADY Q+ELRILAH++    MLDAF+ G D H RTA  ++        
Sbjct: 200  KAFVAPEGSCFVDADYSQIELRILAHISKDDHMLDAFRQGQDIHRRTAAQVF-------- 251

Query: 919  TGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKT 978
                    H + +    L       ERR+AK +NF I YG +  GL+RD  +  +EAK  
Sbjct: 252  --------HKDQEEITDL-------ERRRAKAVNFGIVYGISDYGLSRDLNIPRKEAKDY 296

Query: 979  VDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTP 1038
            +D + +    V  + +      +   +V T+  R R  P +K+   + R+  ER A+NTP
Sbjct: 297  IDRYLDNFSGVQKFMKDIVALGKKQGYVETIFHRRRYVPELKAKNFNIRSFGERIALNTP 356

Query: 1039 VQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +QGSAAD+   AM+++ +  +  +   KL+LQ+
Sbjct: 357  IQGSAADIIKIAMIKVYQALKDSKSQAKLILQI 389


>gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
 gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
          Length = 976

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 103/292 (35%), Positives = 146/292 (50%), Gaps = 28/292 (9%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN L+ ADY Q+ELR+
Sbjct: 698  RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLVSADYSQIELRV 757

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 758  LAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVPV--EGM 793

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + EA K  +
Sbjct: 794  PSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFA 853

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I++     R   ERAAIN P+QGSAAD+   AM+ +      
Sbjct: 854  RENGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGSAADIIRRAMIRMEDALAE 913

Query: 1061 KELGWKLLLQVL--FFFSFSFFSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
            + L  ++LLQV     F      +   +     ++ NA  P    +  LH D
Sbjct: 914  QNLAARMLLQVHDELIFEVPDNEVEKTIPVVRHIMENAAMPAVSLAVPLHVD 965



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 125/319 (39%), Gaps = 88/319 (27%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGP--------EADFGNGKSCIWVDLLDGG 420
           V A DTE   +D  Q       E++ FS+   P        +   G G      DLL GG
Sbjct: 388 VLAFDTETTSLDPMQ------AELVGFSLALAPGRAAYIPLQHKSGAG------DLLGGG 435

Query: 421 ---GRDLLNE----FAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
              G+  L+E         ED S+ K+  N  +D  V+  +G+    F  DTM ++ + D
Sbjct: 436 MVEGQIPLDEALAALKIVLEDASVLKIAQNMKYDWLVMRRHGINTVSFD-DTMLISYVLD 494

Query: 474 SSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKK 531
           +     G + ++ L+                       E ++G   I  KD+ G      
Sbjct: 495 AG---TGSHGMDPLS-----------------------ERWLGHTPIPYKDVAG------ 522

Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPG 591
              +GK +    + +L R       +Y+A D+  TL+L++ LK +L              
Sbjct: 523 ---SGKSAVSFDMVDLDRA-----TAYAAEDADVTLRLWQVLKPRL------------AA 562

Query: 592 KSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCP 651
           + +   Y+   +P  ++L  ME  G+ VDR+ LS +         A  +   + A +   
Sbjct: 563 EGLMSVYERLERPLVDVLACMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYELAGER-- 620

Query: 652 DAKYMNVGSDTQLRQLLFG 670
                N+GS  QL  +LFG
Sbjct: 621 ----FNIGSPKQLGDILFG 635


>gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
 gi|158433853|gb|EDP12142.1| DNA-directed DNA polymerase [Eubacterium dolichum DSM 3991]
          Length = 861

 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 142/253 (56%), Gaps = 24/253 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            K+G++H   N I T+TGRLS+  PNLQN    +++   IR+AF+A P ++L+ ADY Q+E
Sbjct: 584  KDGKIHTIFNQIQTQTGRLSSSEPNLQNISVRDEEGKVIRKAFVASPQHTLMSADYSQIE 643

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+AN K+M+ AF  G D H++TAM ++    + V++                   
Sbjct: 644  LRMLAHMANEKTMIQAFNQGIDIHNQTAMQIFDVDHDHVDSNM----------------- 686

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG++  GL+    ++++EAK+ +D ++     + T+ +    
Sbjct: 687  ------RRSAKTVNFGIVYGQSDFGLSEQLGITMKEAKRFIDKYFASYPNIKTFMDDTIA 740

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
                + +V T+ GR R    I       R   +RAA+N P+QGSAAD+   AM+ I +  
Sbjct: 741  FCEENGYVKTMFGRRRYIKEINDKNYMMREFGKRAAMNAPIQGSAADLIKLAMVHIYQTM 800

Query: 1059 RLKELGWKLLLQV 1071
            + K++  +++LQ+
Sbjct: 801  KEKKVKSRMILQI 813


>gi|423071660|ref|ZP_17060433.1| DNA polymerase I [Streptococcus intermedius F0413]
 gi|355363434|gb|EHG11171.1| DNA polymerase I [Streptococcus intermedius F0413]
          Length = 905

 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 101/295 (34%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I  +  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 586  AVDVLERLAPIAPIVEKILEYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 645

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  K +++AF+
Sbjct: 646  SVDPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDKHLIEAFR 704

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 705  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 742

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 743  YGISDFGLANNLGISRKEAKSYIDTYFERYPRIKNYMENVVREARDKGYVETLFHRRREI 802

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +  R +    ++LLQV
Sbjct: 803  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALRAERFKSRMLLQV 857


>gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
 gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
          Length = 887

 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 148/281 (52%), Gaps = 26/281 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            +  + E   ++ L S ++ PL    + G++ R+H   N + T TGRLS+ +PNLQN P  
Sbjct: 584  VEDILEYRMLEKLRSTYLEPL--PKLVGEDSRLHTHFNQLATATGRLSSSQPNLQNIPIR 641

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
             K   ++R  FIA PG  L  ADY Q+ELR+LAH +   +++DAF+   D H+RTA  + 
Sbjct: 642  GKHGPRMRACFIAGPGAMLAAADYSQIELRVLAHFSGDPALIDAFRNDEDIHTRTAALL- 700

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                               DK P    +D  A ERR AK +NF + YG  P  LAR+  +
Sbjct: 701  ------------------TDKQP----QDVLADERRNAKTINFGLIYGMGPQKLARELDI 738

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
            +V +AK+ ++ ++++   +  + +   K++     V TL GR R  P + S      +  
Sbjct: 739  TVNQAKEFIERYFDKLATLKAYYDTIVKDAESHGFVTTLAGRRRLLPELHSRNTQLVSQA 798

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             R A+NT +QGSAAD+   AM+   K+  L  LG  ++LQV
Sbjct: 799  RRQAVNTVIQGSAADIIKMAMVAAHKDKDLAALGAHVILQV 839


>gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1]
          Length = 832

 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 161/312 (51%), Gaps = 33/312 (10%)

Query: 761  GCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGK 820
            G TE+T  +   A      A  +  REA   +  + +   +  L S +I PL    +  +
Sbjct: 504  GKTEKTGKRSTSA------AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPR 556

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GR+H   N   T TGRLS+  PNLQN P       +IR+AFIA  G  L+  DY Q+EL
Sbjct: 557  TGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIEL 616

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAHL+  ++++  F+ G D H+ TA  M+   R AV+                PL+  
Sbjct: 617  RVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVD----------------PLM-- 658

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RR AK +NF + YG +   L+++  +  EEA+  +  ++    +V  W E   +E
Sbjct: 659  -----RRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIGRYFQSFPKVRAWIEKTLEE 713

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
             R   +V TL GR R  P +++  +S R   ER A N PVQG+AAD+   AM+++    R
Sbjct: 714  GRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PR 771

Query: 1060 LKELGWKLLLQV 1071
            L+E+G ++LLQV
Sbjct: 772  LEEMGARMLLQV 783


>gi|5822373|pdb|1QTM|A Chain A, Ddttp-trapped Closed Ternary Complex Of The Large Fragment
            Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 155/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 225  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 283

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 284  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 343

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 344  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 380

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 381  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 440

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 441  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLEEMGARMLLQV 491


>gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The Large
            Fragment Of Dna Polymerase I From Thermus Aquaticus
 gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I
 gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex Wi
            Abasic Site
 gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna Pol
            In Complex With A Blunt-Ended Dna And Ddatp
 gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In A Closed Ternary Complex With
            Trapped 4'- Ethylated Dttp
 gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In A Closed Ternary Complex With
            Trapped 4'- Methylated Dttp
 gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From
            Thermus Aquaticus Processing C5 Modified Thymidines
 gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From
            Thermus Aquaticus Processing C5 Modified Thymidies
 gi|375332397|pdb|3RR7|A Chain A, Binary Structure Of The Large Fragment Of Taq Dna Polymerase
            Bound To An Abasic Site
 gi|375332400|pdb|3RR8|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
            Polymerase Bound To An Abasic Site And A Ddgtp
 gi|375332403|pdb|3RRG|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
            Polymerase Bound To An Abasic Site And A Ddgtp
 gi|375332406|pdb|3RRH|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
            Polymerase Bound To An Abasic Site And A Ddttp
 gi|375332444|pdb|3T3F|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
            Polymerase Bound To An Abasic Site And Dnitp
 gi|387766300|pdb|4DF4|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In A Closed Ternary Complex With
            7-(N-(10- Hydroxydecanoyl)-Aminopentinyl)-7-Deaza-2 -Datp
 gi|387766303|pdb|4DF8|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In A Closed Ternary Complex With
            Aminopentinyl-7- Deaza-2-Datp
 gi|387766306|pdb|4DFJ|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In A Closed Ternary Complex With
            5-(Aminopentinyl)- Dttp
 gi|387766309|pdb|4DFK|A Chain A, Large Fragment Of Dna Polymerase I From Thermus Aquaticus In
            A Closed Ternary Complex With
            5-(N-(10-Hydroxydecanoyl)-Aminopentinyl)-2-Dutp
 gi|387766312|pdb|4DFM|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In Ternary Complex With
            5-(Aminopentinyl)-2-Dctp
 gi|387766315|pdb|4DFP|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aqauticus In A Ternary Complex With
            7-(Aminopentinyl)-7- Deaza-Dgtp
 gi|388603902|pdb|3RTV|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In A Closed Ternary Complex With
            Natural PrimerTEMPLATE DNA
 gi|390136217|pdb|3SV3|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In A Closed Ternary Complex With
            The Artificial Base Pair Dnam-D5sicstp
 gi|390136220|pdb|3SV4|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In An Open Binary Complex With Dt
            As Templating Nucleobase
 gi|390136223|pdb|3SYZ|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In An Open Binary Complex With
            Dnam As Templating Nucleobase
 gi|390136226|pdb|3SZ2|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I
            From Thermus Aquaticus In An Open Binary Complex With Dg
            As Templating Nucleobase
 gi|428698144|pdb|4DLG|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
            Polymerase
          Length = 540

 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 155/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 225  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 283

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 284  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 343

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 344  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 380

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 381  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 440

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 441  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLEEMGARMLLQV 491


>gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
 gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
          Length = 945

 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 158/307 (51%), Gaps = 29/307 (9%)

Query: 779  FATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
            + T +E  ++ +A S +         I  L+  ++  L    ++ + GR+H S N   T 
Sbjct: 624  YVTNEEVLQSLEASSPIVRNILNYRGIKKLLGTYVDALPKL-INKRTGRIHTSFNQALTA 682

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P    D  +IR+ FI  P      ADY Q+ELRI+AHL+  ++M++
Sbjct: 683  TGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEPECVFFSADYSQIELRIMAHLSKDENMIE 742

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF++G D H  TA  +                WH      +P+ +D   ++R+KAK  NF
Sbjct: 743  AFRSGYDIHRATAAKI----------------WH------IPM-EDVTDTQRKKAKQANF 779

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG T  GLA+   +   EAKK ++ ++N   +V  + E+ K+ +R   +  T+ GR 
Sbjct: 780  GIIYGITTYGLAQRMGIPNNEAKKLIEDYFNTFPKVHDFMESAKELARKKGYAETIFGRR 839

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R    I S   + R   ER AIN P+QG+ AD+   AM+ I +    + +  K++LQV  
Sbjct: 840  RYLNDINSKNSTVRGFAERNAINAPIQGTEADIIKVAMIRIYERFCRENIRSKMILQVHD 899

Query: 1074 FFSFSFF 1080
              +FS F
Sbjct: 900  ELNFSVF 906



 Score = 44.7 bits (104), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 123/352 (34%), Gaps = 71/352 (20%)

Query: 319 NKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAK 378
           N+   E+ NS  L   +S L S +    ++DN   A +V   L   +   + + DTE   
Sbjct: 328 NENTGEDTNSSILSDFKS-LKSVHYEYQLIDNEEEAIRVCDFL---FTSDILSLDTETTS 383

Query: 379 IDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIK 438
            +  Q       E++  S    P   F      I +       + ++N F P +E+  I 
Sbjct: 384 TNTMQ------AELVGLSFSIEPNKAF-----YIAIPSDRDKAQKMVNIFKPLYEEDKIL 432

Query: 439 KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
           K+  N  +D  VL  YG+ + G   DTM    L          Y  E L  + K +  D+
Sbjct: 433 KIGQNIKYDYEVLAQYGINIKGKMFDTMIAHYLIQPELHHNMDYMAETLL-NYKTIHIDE 491

Query: 499 KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
               K   + N     M  +S   I+                                 Y
Sbjct: 492 LIGAKGKEQKN-----MRNLSPTSIY--------------------------------EY 514

Query: 559 SAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGML 618
           +  D+  TL+LY  L  KL         K V  + +F    +   P   +L  ME  G+ 
Sbjct: 515 ACEDADITLQLYNVLLPKL---------KDVNAEKLF---WDIEMPLVRVLANMEMNGVC 562

Query: 619 VDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
           +D + L E   +     +    +  + A +        N+ S  Q+  +LFG
Sbjct: 563 LDTDALQETSNIFTKRMQTYEAQIYEQAGEK------FNISSPKQVGDILFG 608


>gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|352685447|ref|YP_004897432.1| DNA polymerase I [Acidaminococcus intestini RyC-MR95]
 gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|350280102|gb|AEQ23292.1| DNA polymerase I [Acidaminococcus intestini RyC-MR95]
          Length = 873

 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 101/284 (35%), Positives = 153/284 (53%), Gaps = 30/284 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            I  + E  ++  L+S +++ L    ++   GR+H   N + T TGRLS+  PNLQN P  
Sbjct: 568  IETIMEYRTLSKLLSTYLVALH-PLINPNTGRIHTHFNQMATVTGRLSSTDPNLQNIPTR 626

Query: 851  EKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             +   ++R+ F+   G  L+++ DY Q+ELR++A +A  + ++DAF+ G D HSRTA  +
Sbjct: 627  TEVGKQMRRMFVPGKGYDLLMSCDYSQVELRVMASIAGDERLIDAFRHGQDIHSRTASEI 686

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +                       VP+ +D     R KAK +NF I YG +  GL R   
Sbjct: 687  FG----------------------VPI-EDVTPFMRSKAKTVNFGIIYGISDFGLGRQLG 723

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            V   EA + +D ++     V  + E  KK++R   +V TL GR R  P I +   ++R+ 
Sbjct: 724  VPRSEAAQYIDSYFARYTGVKEYMEGEKKKAREMGYVETLFGRRRYLPDIHAKNFNRRSF 783

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             ER AINTP+QG+AAD+   AML ++K   LKE G K  +LLQV
Sbjct: 784  AERTAINTPIQGTAADIIKIAMLHVAK--ELKEAGVKSRVLLQV 825


>gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
 gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
          Length = 920

 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 97/265 (36%), Positives = 137/265 (51%), Gaps = 24/265 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + G +H S N   T TGRLS+  PNLQN P   +D  +IR+ FI   G     ADY 
Sbjct: 640  INPQTGHIHTSFNQTVTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEDGCLFFSADYS 699

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR++AHL+  K M++AF+ G D H+ TA  MY                 G++     
Sbjct: 700  QIELRVMAHLSGDKHMIEAFQEGYDIHAATAAKMY-----------------GKE----- 737

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD    ER KAK  NF I YG T  GLA    +   EAK+ +D ++    +V ++ E 
Sbjct: 738  -MKDVTRDERTKAKRANFGIIYGITVFGLAERLGIDRGEAKQLIDGYFTTFPQVQSYMEQ 796

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K  +R   +V T   R R  P I S   + R   ER AIN P+QGSAAD+   AM+ I 
Sbjct: 797  AKDMAREKGYVETFFHRRRYLPDINSQNATVRGFAERNAINAPIQGSAADIIKVAMIRIY 856

Query: 1056 KNARLKELGWKLLLQVLFFFSFSFF 1080
            +  + + +  K++LQV    +FS  
Sbjct: 857  ERFKRENIQSKMILQVHDELNFSVL 881


>gi|407685815|ref|YP_006800988.1| DNA polymerase I [Alteromonas macleodii str. 'Balearic Sea AD45']
 gi|407289195|gb|AFT93507.1| DNA polymerase I [Alteromonas macleodii str. 'Balearic Sea AD45']
          Length = 930

 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 90/247 (36%), Positives = 136/247 (55%), Gaps = 28/247 (11%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S +   T TGRLS+  PNLQN P   ++  ++RQAF+   GN  + ADY 
Sbjct: 649  INHRTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRVRQAFVPREGNKFVAADYS 708

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                       VP
Sbjct: 709  QIELRIMAHLSGDKGLLDAFAHGKDIHKATAAEVFG----------------------VP 746

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            L  +    +RR AK +NF + YG +  GL++   +   EA+K +DL++     VL + ++
Sbjct: 747  L-DEVTTEQRRSAKAINFGLIYGMSAFGLSKQLNIPRNEAQKYMDLYFERYPGVLEYMDS 805

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE-- 1053
             ++ ++   +V T+ GR    P IK+   ++R   ERAAIN P+QG+AAD+   AM++  
Sbjct: 806  TRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINAPMQGTAADIIKMAMIKVD 865

Query: 1054 --ISKNA 1058
              I KNA
Sbjct: 866  DWIRKNA 872


>gi|333923229|ref|YP_004496809.1| DNA polymerase I [Desulfotomaculum carboxydivorans CO-1-SRB]
 gi|333748790|gb|AEF93897.1| DNA polymerase I [Desulfotomaculum carboxydivorans CO-1-SRB]
          Length = 882

 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 97/257 (37%), Positives = 143/257 (55%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADY 874
            V  + GR+H + +   T TGRLS+  PNLQN P   +   +IR+ F+    GN ++ ADY
Sbjct: 599  VDPQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLESGRRIRKVFVPRQKGNLILTADY 658

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++   S L+AF+ G D H+RTA  ++                       V
Sbjct: 659  SQIELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFG----------------------V 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            P+ ++     R +AK +NF I YG +  GLARD KVS  EAK  +D ++     V  + +
Sbjct: 697  PM-EEVTPDMRSRAKAVNFGIVYGISDFGLARDLKVSRREAKSYIDNYFARCPGVKDYID 755

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               KE++   +V TLL R R  P + S   + R+  ERAA+NTP+QGSAAD+   AM+ +
Sbjct: 756  RVIKEAKHTGYVTTLLNRRRYLPDLFSPNYNARSFGERAAMNTPIQGSAADIIKLAMVRV 815

Query: 1055 SKNARLKELGWKLLLQV 1071
            ++  R + L  KL+LQV
Sbjct: 816  ARELRERNLQAKLVLQV 832


>gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
 gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
          Length = 1015

 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 96/272 (35%), Positives = 143/272 (52%), Gaps = 26/272 (9%)

Query: 801  IDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQ 859
            ++ L S ++ PL    +    GR+H + N + T TGRLS+  PNLQN PA      ++R 
Sbjct: 717  LEKLRSTYLEPL--PKLVDDAGRIHSTFNQLATATGRLSSSNPNLQNIPARGDLGRRMRS 774

Query: 860  AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
             F A  GN L+ ADY Q+ELR+LAH++   ++L AF+ G D H RTA  +Y         
Sbjct: 775  CFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLY--------- 825

Query: 920  GQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTV 979
                      D  P    +D    +RR AK +NF + YG  P  L ++ +++V EAK+ +
Sbjct: 826  ----------DTAP----EDVTPDQRRNAKTINFGLIYGMGPQKLGQELRITVNEAKQFI 871

Query: 980  DLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPV 1039
            + +++  Q +  + +  +  +R   HV TL GR R  P + S     R+   R AINT +
Sbjct: 872  ERYFSRLQHLRNFYDNVEAAAREQGHVTTLAGRRRLLPEMHSENTQLRSQARRQAINTLI 931

Query: 1040 QGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            QGSAAD+   AML    +  L  L  +L+LQV
Sbjct: 932  QGSAADIIKLAMLAAHDDPVLHGLKARLILQV 963


>gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00]
 gi|442555361|ref|YP_007365186.1| DNA polymerase I [Lawsonia intracellularis N343]
 gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia
            intracellularis PHE/MN1-00]
 gi|441492808|gb|AGC49502.1| DNA polymerase I [Lawsonia intracellularis N343]
          Length = 868

 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 151/297 (50%), Gaps = 30/297 (10%)

Query: 780  ATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T QE  E        I  + E   ++ L S ++ PL    + GK+GRVH + N + T T
Sbjct: 545  STSQEVLEKLSGQHPIIDTILEYRKLEKLRSTYLEPL--PRLIGKDGRVHTTFNQLATAT 602

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       ++R  F A  GN LI ADY Q+ELR+LAH +   ++L A
Sbjct: 603  GRLSSSNPNLQNIPIRGSLGQRMRSCFTASQGNLLISADYSQVELRVLAHYSKDPTLLTA 662

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F  G D H+RTA  +Y       E  Q                ++  A ERR AK +NF 
Sbjct: 663  FLEGADIHTRTASLLY-------EKSQ----------------EEVTADERRNAKTINFG 699

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG  P  LA++   ++ EAKK +  ++   Q +  + +  +  ++   +V T+ GR R
Sbjct: 700  LIYGMGPQKLAQELNTTLNEAKKFIQRYFEHLQAIKKFYDQVEHSAKEYGYVTTIAGRRR 759

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              P I S     +    R AINT +QGSAAD+   AML +  +  L ++  +L+LQV
Sbjct: 760  LLPDIHSENIQLQALARRQAINTIIQGSAADIIKIAMLTVHGDTTLAKMDAQLILQV 816


>gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis]
          Length = 871

 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 162/302 (53%), Gaps = 37/302 (12%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSL-NI 830
            ++T+ E  E      D +S + E   +  L S +I   LPL       +N RVH +   +
Sbjct: 550  YSTDSEVLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMD-----ENDRVHSNFKQM 604

Query: 831  NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCK 889
               TGR+S+  PNLQN P  E+   +IR+AFI    +  IV ADY Q+ELR+LAHL+  +
Sbjct: 605  VAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHLSEDE 664

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
             +++AF    D H RTA  ++                     PP    ++     RR AK
Sbjct: 665  KLIEAFMNNEDIHLRTASEVFKV-------------------PP----QNVTPEMRRAAK 701

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
            ++NF I YG +  GLA+D K+S +EAK+ +D ++ + + V  + E   + ++ + +V T+
Sbjct: 702  VVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTI 761

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            + R R  P I S   +QR+  ER A+NTP+QGSAAD+   AM+++ +  +   L  +L+L
Sbjct: 762  MNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLIL 821

Query: 1070 QV 1071
            QV
Sbjct: 822  QV 823


>gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
 gi|451967432|ref|ZP_21920674.1| DNA polymerase I [Edwardsiella tarda NBRC 105688]
 gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
 gi|451313753|dbj|GAC66036.1| DNA polymerase I [Edwardsiella tarda NBRC 105688]
          Length = 930

 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 137/256 (53%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            VS   GRVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA  G+ ++ ADY 
Sbjct: 650  VSPLTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSKIVAADYS 709

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  + +L+AF AG D H  TA  ++     AV                  
Sbjct: 710  QIELRIMAHLSGDRGLLEAFAAGKDIHRATAAEVFGLPLEAVT----------------- 752

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                  A +RR AK +NF + YG +  GLAR   +   EA++ +DL++     VL + E 
Sbjct: 753  ------ADQRRSAKAINFGLIYGMSAFGLARQLNIGRNEAQRYMDLYFERYPGVLAYMER 806

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             ++++    +V TL GR    P I +    +R   ERAAIN P+QG+AAD+   AM+ + 
Sbjct: 807  TRQQASEQGYVETLDGRRLYLPEINARNAMRRKAAERAAINAPMQGTAADIIKRAMIAVD 866

Query: 1056 KNARLKELGWKLLLQV 1071
               +  +   ++++QV
Sbjct: 867  AWLQQSQPQVRMIMQV 882


>gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
 gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
          Length = 882

 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/257 (37%), Positives = 143/257 (55%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADY 874
            V  + GR+H + +   T TGRLS+  PNLQN P   +   +IR+ F+    GN ++ ADY
Sbjct: 599  VDPQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLESGRRIRKVFVPRQKGNLILTADY 658

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++   S L+AF+ G D H+RTA  ++                       V
Sbjct: 659  SQIELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFG----------------------V 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            P+ ++     R +AK +NF I YG +  GLARD KVS  EAK  +D ++     V  + +
Sbjct: 697  PM-EEVTPDMRSRAKAVNFGIVYGISDFGLARDLKVSRREAKSYIDNYFARCPGVKDYID 755

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               KE++   +V TLL R R  P + S   + R+  ERAA+NTP+QGSAAD+   AM+ +
Sbjct: 756  RVIKEAKHTGYVTTLLNRRRYLPDLFSPNYNARSFGERAAMNTPIQGSAADIIKLAMVRV 815

Query: 1055 SKNARLKELGWKLLLQV 1071
            ++  R + L  KL+LQV
Sbjct: 816  ARELRERNLQAKLVLQV 832


>gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus]
 gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/259 (37%), Positives = 152/259 (58%), Gaps = 29/259 (11%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  ADY
Sbjct: 597  VHHDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 657  SQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIF-HVSE------------------- 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 697  ---EEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R FP I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  TIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKE--LGWKLLLQV 1071
            +  ARLKE  L  +LLLQV
Sbjct: 814  A--ARLKEERLQARLLLQV 830


>gi|393782517|ref|ZP_10370700.1| DNA polymerase I [Bacteroides salyersiae CL02T12C01]
 gi|392672744|gb|EIY66210.1| DNA polymerase I [Bacteroides salyersiae CL02T12C01]
          Length = 935

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 157/307 (51%), Gaps = 33/307 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+       +  + E   +  L+  +I  LPL    ++ + GRVH S N   
Sbjct: 614  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLL---INPRTGRVHTSFNQTV 670

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M
Sbjct: 671  TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 730

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +G D H+ TA  +Y   +  +E                    D  +  RRKAK  
Sbjct: 731  IDAFLSGYDIHAATAAKVY---KTNIE--------------------DVNSDMRRKAKTA 767

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ ++ ++    +V  + +   + +R   +V T+  
Sbjct: 768  NFGIIYGISVFGLAERMNVDRKEAKELIEGYFETYPQVKAYMDKSIEVAREKGYVETIFH 827

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + L  K++LQV
Sbjct: 828  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKREGLKAKMILQV 887

Query: 1072 LFFFSFS 1078
                +FS
Sbjct: 888  HDELNFS 894


>gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
 gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
          Length = 950

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 154/294 (52%), Gaps = 32/294 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N  +    +E   + +    L E   +  L S +   LP     V+ + GRVH 
Sbjct: 627  KGAPSTNEDVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 680

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  +I ADY Q+ELRI+AHL
Sbjct: 681  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 740

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +N   +++AF  G D H  TA  ++                       +PL +   + +R
Sbjct: 741  SNDAGLINAFAQGKDIHRSTAAEIFG----------------------LPL-EQVTSEQR 777

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+R   +S  +A++ +DL++     V T+    +++++   +
Sbjct: 778  RNAKAINFGLIYGMSSFGLSRQLGISRADAQRYMDLYFQRYPGVQTFMHDIREKAKAQGY 837

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            V TL GR    P I S    +R   ER AIN P+QG+AAD+  CAM+++ +  R
Sbjct: 838  VETLFGRRLYLPEINSSNAMRRKGAERVAINAPMQGTAADIIKCAMIKLDEITR 891


>gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB]
          Length = 878

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/259 (37%), Positives = 152/259 (58%), Gaps = 29/259 (11%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  ADY
Sbjct: 597  VHHDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 657  SQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIF-HVSE------------------- 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 697  ---EEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R FP I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  TIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKE--LGWKLLLQV 1071
            +  ARLKE  L  +LLLQV
Sbjct: 814  A--ARLKEERLQARLLLQV 830


>gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1
            (Paris)']
 gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain
            'Patoc 1 (Ames)']
 gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain
            'Patoc 1 (Ames)']
 gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain
            'Patoc 1 (Paris)']
          Length = 942

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 166/316 (52%), Gaps = 28/316 (8%)

Query: 757  LDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSN 816
             +D     E + +   ++++ +  + Q      D + ++ +   + S  ++  LPL    
Sbjct: 606  FEDLRLPAEKKTQTGYSTDHSVLESLQGTHPIIDDLLSIRKFSKLKSTYTD-TLPLL--- 661

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ K  R+H S N     TGRLS+  PNLQN P  +++   +R+ FIA  G  ++  DY 
Sbjct: 662  VNPKTKRIHTSYNQTIAATGRLSSTNPNLQNIPIKDEEGRLLRKGFIAKKGYEILSLDYS 721

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AH +N  +M+DA+ +G D H RTA  ++      V   QV  +          
Sbjct: 722  QIELRIMAHFSNDPNMIDAYNSGADIHKRTAAGIF-----GVPEDQVTPDM--------- 767

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     R KAK++NFS+ YG T  GL+ + ++S +EAK+ ++ ++   + V T+ E 
Sbjct: 768  ---------RNKAKVVNFSVIYGVTSFGLSNNLRISRKEAKEFIEKYFAAYKGVATYMEE 818

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +  + + +V TLLGR R  P I S  +      +R AIN+P+QG++AD+   AM++I 
Sbjct: 819  IVEFCKQNGYVETLLGRRRYLPDIHSSHKMVSEGAKRVAINSPIQGTSADMIKIAMIQIH 878

Query: 1056 KNARLKELGWKLLLQV 1071
            +  + +    KLLLQV
Sbjct: 879  EKIKKESFRSKLLLQV 894



 Score = 40.8 bits (94), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
           L    P  ED + KK+  N  +D  VL+NYG+++ G + DTM  + L +   R
Sbjct: 418 LKILKPMLEDSNWKKIGQNIKYDLLVLKNYGIELKGIYFDTMLASYLLNPGER 470


>gi|357237551|ref|ZP_09124892.1| DNA-directed DNA polymerase [Streptococcus ictaluri 707-05]
 gi|356753741|gb|EHI70844.1| DNA-directed DNA polymerase [Streptococcus ictaluri 707-05]
          Length = 880

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/295 (34%), Positives = 161/295 (54%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMSDGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     +SL+++ DY Q+ELR+LAH++  + ++ AFK
Sbjct: 621  SVDPNLQNIPIRLEQGRL-IRKAFTPSQADSLLLSSDYSQIELRVLAHISGDEHLIAAFK 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D  A++RR AK +NF I 
Sbjct: 680  EGADIHTATAMRVF-----------------GIEKP-----EDVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S ++AK+ +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGISRKQAKQYIDTYFERYPGIKDYMERVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + +  +  +   K+LLQV
Sbjct: 778  PDINSRNFNLRSFAERTAINSPIQGSAADILKIAMINLDQALQDGQFEAKMLLQV 832


>gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2]
 gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2]
          Length = 1013

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/299 (35%), Positives = 148/299 (49%), Gaps = 26/299 (8%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S V+ + GRVH S  +  T TGRLS+  PNLQN P   +   KIR+AFIA PG  LI AD
Sbjct: 727  SYVNPETGRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFIAPPGRKLISAD 786

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+   +  AF    D H+ TA  M+      V           E  PP
Sbjct: 787  YSQIELRLLAHIADISQLRAAFAENLDIHAMTASEMF-----GVPV---------EGMPP 832

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+AK +NF I YG +  GLA    +  EEA   +  ++     +  + 
Sbjct: 833  ---------EVRRRAKAINFGIIYGISAFGLANQLAIPREEAGAYIKRYFERFPGIRAYM 883

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            +A K+ +R + +V T+ GR   +P I +   S+R   ERAAIN P+QGSAAD+   AM+ 
Sbjct: 884  DATKQFARENGYVTTIFGRKCHYPRITASNPSERAFNERAAINAPIQGSAADIIRRAMVR 943

Query: 1054 ISKNARLKELGWKLLLQVL--FFFSFSFFSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
            + +      L  ++LLQV     F      I   +     V+ +A HP    +  L  D
Sbjct: 944  MDEALEKAGLSAQMLLQVHDELVFEAPDEEIDATIDVVRKVMVDAPHPFLQLAVPLQVD 1002



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 115/309 (37%), Gaps = 66/309 (21%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSG---PEADFGNGKSCIW--VDLLDG--GG 421
           + A DTE + +D  Q   V  G  +C +       P    G G   ++   DL+ G    
Sbjct: 423 IIAIDTETSSLDPMQAELV--GLSLCLAPGRAAYVPLRHRGEGAGDLFGGADLVPGQLDS 480

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
            + L    P  E P + K+  N  FD  VL   G++++    DT+ ++ + D+       
Sbjct: 481 DETLARLKPMLEAPDVLKIAQNAKFDQLVLAQRGIRLAPVD-DTLLLSYVLDA------- 532

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
                                     G TD G    +  +  FG R ++    AG   T 
Sbjct: 533 --------------------------GRTDHGM--DVLAEKYFGHRPIQFGAVAGSGRTF 564

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
                  R   +    YSA D+  TL+L++ LK +L              + M   Y+  
Sbjct: 565 I---GFARVALDKATEYSAEDADVTLRLWRVLKPRLA------------AERMSAVYETL 609

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            +P  E L +ME  G+ +DR  LS      R   E A +  R  A       +  N+GS 
Sbjct: 610 ERPMVETLARMERRGVSIDRAILS------RLSGEFAQDMARLEAVIFELAGESFNLGSP 663

Query: 662 TQLRQLLFG 670
            QL  +LFG
Sbjct: 664 KQLGDILFG 672


>gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/259 (37%), Positives = 152/259 (58%), Gaps = 29/259 (11%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  ADY
Sbjct: 597  VHHDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 657  SQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIF-HVSE------------------- 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 697  ---EEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R FP I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  TIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKE--LGWKLLLQV 1071
            +  ARLKE  L  +LLLQV
Sbjct: 814  A--ARLKEERLQARLLLQV 830


>gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95]
 gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95]
          Length = 896

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 165/309 (53%), Gaps = 37/309 (11%)

Query: 769  KGAVASNNKIFATEQEAREACD----AISALCEVCSIDSLISNFILPLQGSNVSGKNGRV 824
            KG   + +  ++T+ ++ EA       I  L E      L+S +I+ +    V+ K GRV
Sbjct: 573  KGKRKTKSGSYSTDADSLEALRDEHPIIEKLLEYRKYQKLLSTYIIAIPKL-VNKKTGRV 631

Query: 825  HCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN-SLIVADYGQLELRIL 882
            H S N   T TGRLS+  PNLQN P  E+D  +IR    A   +  L+ ADY Q+ELR+L
Sbjct: 632  HTSFNQTGTATGRLSSSEPNLQNLPIREEDGERIRSTVKAQKDDYVLLSADYSQIELRVL 691

Query: 883  AHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFA 942
            AHL N +++++AF  G D H+ TA  ++      V+                  + D   
Sbjct: 692  AHLTNDETLINAFNNGEDIHALTAAAIF-----GVK------------------IDDVDY 728

Query: 943  SERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRI 1002
            + RR  K++NFS+ YG +P GLA + K+ VE+AK  ++ ++   Q+V  +QE+  K +  
Sbjct: 729  NMRRVGKVVNFSLVYGSSPYGLAENLKIPVEDAKDFMNRYFKTYQKVKEYQESSLKIATQ 788

Query: 1003 DNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKE 1062
              +V T+ GR R    IK    + ++ ++R  INTP+QGSAAD+   AM+ + K    KE
Sbjct: 789  KGYVETIFGRKRFLKNIK----TGKSELKRIVINTPIQGSAADIMKLAMINLYKKLP-KE 843

Query: 1063 LGWKLLLQV 1071
               KL+LQV
Sbjct: 844  --AKLILQV 850


>gi|406595017|ref|YP_006746147.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
 gi|406372338|gb|AFS35593.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
          Length = 930

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/247 (36%), Positives = 136/247 (55%), Gaps = 28/247 (11%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S +   T TGRLS+  PNLQN P   ++  ++RQAF+   GN  + ADY 
Sbjct: 649  INHRTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRVRQAFVPREGNKFVAADYS 708

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                       VP
Sbjct: 709  QIELRIMAHLSGDKGLLDAFAHGKDIHKATAAEVFG----------------------VP 746

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            L  +    +RR AK +NF + YG +  GL++   +   EA+K +DL++     VL + ++
Sbjct: 747  L-DEVTTEQRRSAKAINFGLIYGMSAFGLSKQLNIPRNEAQKYMDLYFERYPGVLEYMDS 805

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE-- 1053
             ++ ++   +V T+ GR    P IK+   ++R   ERAAIN P+QG+AAD+   AM++  
Sbjct: 806  TRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINAPMQGTAADIIKMAMIKVD 865

Query: 1054 --ISKNA 1058
              I KNA
Sbjct: 866  DWIRKNA 872


>gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33]
 gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33]
 gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84]
 gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407]
 gi|386578217|ref|YP_006074623.1| DNA polymerase I [Streptococcus suis GZ1]
 gi|386582296|ref|YP_006078700.1| DNA polymerase I [Streptococcus suis SS12]
 gi|386588483|ref|YP_006084884.1| DNA polymerase I [Streptococcus suis A7]
 gi|403061853|ref|YP_006650069.1| DNA polymerase I [Streptococcus suis S735]
 gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
            [Streptococcus suis 05ZYH33]
 gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
            [Streptococcus suis 98HAH33]
 gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84]
 gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407]
 gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1]
 gi|353734442|gb|AER15452.1| DNA polymerase I [Streptococcus suis SS12]
 gi|354985644|gb|AER44542.1| DNA polymerase I [Streptococcus suis A7]
 gi|402809179|gb|AFR00671.1| DNA polymerase I [Streptococcus suis S735]
          Length = 878

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 157/284 (55%), Gaps = 28/284 (9%)

Query: 791  AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
             +S + E   I  L S +++ LQ + +  ++G++H   +   T+TGRLS+  PNLQN P 
Sbjct: 572  VVSKILEYRQITKLQSTYVVGLQDAIL--EDGKIHTRYVQDLTQTGRLSSTDPNLQNIPV 629

Query: 850  -LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
             LE+ R  IR+AF+    NS+++A DY Q+ELR+LAH++  + +++AF+ G D H+ TAM
Sbjct: 630  RLEQGRL-IRKAFVPSLENSVLLASDYSQIELRVLAHISQDQHLIEAFQQGADIHTSTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++      +E  + +                   ++RR AK +NF + YG +  GL+ +
Sbjct: 689  RVF-----GIEKAEYVT-----------------PNDRRNAKAVNFGVVYGISDFGLSNN 726

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAK  +D ++     +  + E   +E+R   +V T+  R R  P I S   + R
Sbjct: 727  LGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVR 786

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            N  ER AIN+P+QGSAAD+   AM+ + K      L  ++LLQV
Sbjct: 787  NFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQV 830


>gi|334702620|ref|ZP_08518486.1| DNA polymerase I [Aeromonas caviae Ae398]
          Length = 916

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 154/307 (50%), Gaps = 33/307 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 591  KGAPSTAEEVLA---ELAETYELPRLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 644

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 645  SYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCAGYKLVAADYSQIELRIMAHL 704

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++    +AV +                         R
Sbjct: 705  SGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTSDM-----------------------R 741

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    +
Sbjct: 742  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQAEAQGY 801

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 802  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDGWIRGIEDES 861

Query: 1065 WKLLLQV 1071
             ++L+QV
Sbjct: 862  IRMLMQV 868



 Score = 47.8 bits (112), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 125/304 (41%), Gaps = 66/304 (21%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA--DFGNGKSCIWVDLLDGGGRDLLN 426
           + A DTE   +D  +   V     + F++  G  A   FG+      V L +     +L 
Sbjct: 338 LFAFDTETTSLDYMEARVVG----VSFAVEPGKAAYVPFGHDYLGAPVQLTEAV---VLG 390

Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
           +  P  EDP+  KV  N  +D +VL N+G+++ G   DTM  + + +S   T   + +++
Sbjct: 391 KLKPLLEDPARLKVGQNLKYDRNVLLNHGIELQGIAYDTMLESYVLNS---TASRHDMDS 447

Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
           L   R+ ++ +  ++++   KG      + +++   I                       
Sbjct: 448 LA--RRYLNVETISFEEIAGKG------VKQLTFNQI----------------------- 476

Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPF 605
               E E    Y+A D+  TL+L+++L        W KL  +P     +   + E   P 
Sbjct: 477 ----ELEQAAPYAAEDADITLRLHQTL--------WGKLSAEP----GLAKVFSEIELPL 520

Query: 606 GEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLR 665
             +L +ME  G  ++ + L +  +    E E  +    K A  H    +  N+ S  QL 
Sbjct: 521 LPVLARMERLGTTIEPKLLHQQSQ----EIEVRLAELEKQA--HELAGQEFNLSSPKQLG 574

Query: 666 QLLF 669
           ++LF
Sbjct: 575 EILF 578


>gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4]
 gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Thermoanaerobacter tengcongensis MB4]
          Length = 871

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 162/302 (53%), Gaps = 37/302 (12%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSL-NI 830
            ++T+ E  E      D +S + E   +  L S +I   LPL       +N RVH +   +
Sbjct: 550  YSTDSEVLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMD-----ENDRVHSNFKQM 604

Query: 831  NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCK 889
               TGR+S+  PNLQN P  E+   +IR+AFI    +  IV ADY Q+ELR+LAHL+  +
Sbjct: 605  VAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHLSEDE 664

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
             +++AF    D H RTA  ++                     PP    ++     RR AK
Sbjct: 665  KLIEAFMNNEDIHLRTASEVFKV-------------------PP----QNVTPEMRRAAK 701

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
            ++NF I YG +  GLA+D K+S +EAK+ +D ++ + + V  + E   + ++ + +V T+
Sbjct: 702  VVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTI 761

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            + R R  P I S   +QR+  ER A+NTP+QGSAAD+   AM+++ +  +   L  +L+L
Sbjct: 762  MNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLIL 821

Query: 1070 QV 1071
            QV
Sbjct: 822  QV 823


>gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498]
          Length = 968

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/269 (37%), Positives = 142/269 (52%), Gaps = 34/269 (12%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP          GRVH + ++ T  TGRLS+  PNLQN P    +  KIR+AF+A
Sbjct: 680  LPSYILP--------TTGRVHTNYSLATTLTGRLSSSEPNLQNIPVRTAEGRKIRKAFVA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G  L+ ADY Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+     AVE     
Sbjct: 732  SKGYLLLSADYSQIELRILAHVADITALKEAFTKGQDIHTMTASQMFG---VAVE----- 783

Query: 924  LEWHGEDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLW 982
                               SE RR+AK +NF I YG +P GLA    +S +EA   + L+
Sbjct: 784  ----------------GMTSEIRRRAKAINFGIIYGISPFGLASQLGISRKEASDYIQLY 827

Query: 983  YNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGS 1042
            +     +  + E  K  +R   +V T+ GR   +P IK+     R   ERAAIN P+QGS
Sbjct: 828  FERFPGIEDYMERTKIFARHHGYVETIFGRRIHYPEIKTAKSQIRAFNERAAINAPIQGS 887

Query: 1043 AADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AAD+   AM+++      + L  K+LLQV
Sbjct: 888  AADIIRRAMIQMENALEKERLSAKMLLQV 916



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 136/333 (40%), Gaps = 87/333 (26%)

Query: 417 LDGGGRDL--------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHM 468
           L GGGR +        L    P  E+ ++ K+  N  +D  V++ Y + +  F  DTM +
Sbjct: 423 LLGGGRIVPQIETQKALALLKPILENQAVLKIGQNIKYDWLVMKQYNIVMCSFD-DTMLL 481

Query: 469 ARLWDSSRRTEGGYSLEA--LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGR 526
           +            Y+LEA   T    V+S+    ++               IS KD+   
Sbjct: 482 S------------YALEAGISTHGMDVLSKRWLGHKP--------------ISYKDL--- 512

Query: 527 RKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDG 586
                  S  KI + A V+  Q         Y+A D+  TL+L++ LK +L+        
Sbjct: 513 -----THSGRKIVSFAQVDLKQAT------LYAAEDADITLRLWQVLKPQLV-------- 553

Query: 587 KPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIE-KVARAEQEAAVNRFRKW 645
                + M   Y+   +P  EIL +ME  G+LVDR+ LS +  ++A+A        ++  
Sbjct: 554 ----AQKMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQLV 609

Query: 646 ASKHCPDAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEG 700
             K        N+ S  QL  +LFG     G   +K    S   + +      E + AEG
Sbjct: 610 GEK-------FNIASPKQLGDILFGKMGLLGGAKTKSGQWSTSAQTL------EELAAEG 656

Query: 701 KKTPSK---FRNIT-LRSIGVD-LPTEMYTATG 728
              P K   +R +T L+S   D LP+ +   TG
Sbjct: 657 HILPRKIIDWRQLTKLKSTYTDALPSYILPTTG 689


>gi|375091430|ref|ZP_09737723.1| DNA polymerase I [Helcococcus kunzii ATCC 51366]
 gi|374563530|gb|EHR34843.1| DNA polymerase I [Helcococcus kunzii ATCC 51366]
          Length = 878

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 154/292 (52%), Gaps = 32/292 (10%)

Query: 789  CDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCSLNINTE-TGRLSA 839
             D +S L     I  LI  +  +  L+G+ + G      K+GR+H   N     TGRLS+
Sbjct: 563  IDVLSKLRNEHEIIPLIEQYRQVSKLKGTYIDGLIKVISKDGRIHSKFNQTVAATGRLSS 622

Query: 840  RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
              PNLQN P   ++   IR+AF+A     L+ ADY Q+ELR+LA L   K+MLDAF+ G 
Sbjct: 623  TDPNLQNIPIKTEEGRMIRKAFVAGEDKLLVSADYSQIELRVLAALTKDKNMLDAFEHGI 682

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H++TA  ++    + V   Q                       R +AK +NF I YG 
Sbjct: 683  DIHTKTASEVFKVDLDKVTKLQ-----------------------RSEAKAVNFGIVYGI 719

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            +  GL+ D  +  ++AK+ ++ +     E+  + E+  K+++ D +V TL  R R  P +
Sbjct: 720  SDYGLSEDLSIPRKQAKQYIEEYLASYPEISKYMESIVKKAKEDGYVETLFNRRRYIPEL 779

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            KS   + R+  ER A+NTP+QG+AAD+   AM+ + +  + ++L  KL+LQ+
Sbjct: 780  KSSNFNVRSFGERIALNTPIQGTAADIIKIAMINVYERLKKEKLNSKLILQI 831


>gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus]
          Length = 878

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/259 (37%), Positives = 152/259 (58%), Gaps = 29/259 (11%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  ADY
Sbjct: 597  VHHDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 657  SQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIF-HVSE------------------- 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 697  ---EEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R FP I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  TIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKE--LGWKLLLQV 1071
            +  ARLKE  L  +LLLQV
Sbjct: 814  A--ARLKEERLQARLLLQV 830


>gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10]
 gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10]
          Length = 928

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 139/258 (53%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            ++++    RVH S ++  T TGRLS+  PNLQN P   +   +IR+ FIA PG+ L+ AD
Sbjct: 642  AHINRDTKRVHTSFSLAATTTGRLSSTEPNLQNIPIRTEAGRQIREVFIAEPGHVLVAAD 701

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+AN +S+  AF+ G D H+ TA  ++             +   G D   
Sbjct: 702  YSQVELRLLAHIANVESLKQAFRDGTDIHAMTASEVFG------------VPIEGMD--- 746

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             P++       RRKAK +NF + YG +  GLA    V  +EAK  +D ++ +   +  + 
Sbjct: 747  -PMV-------RRKAKAINFGVIYGISAFGLANQIGVKRDEAKAFIDAYFEKFPGIRAYM 798

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            +  K ++    +V T+ GR   FP I+    + R   ER AIN P+QGSAADV   AM+ 
Sbjct: 799  DEMKAKAAETGYVETIFGRRAHFPGIRDKNPNMRMFAERQAINAPIQGSAADVIRRAMIR 858

Query: 1054 ISKNARLKELGWKLLLQV 1071
            +        L  K+LLQV
Sbjct: 859  MDDALNAANLDAKMLLQV 876



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 59/254 (23%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
           L    P  EDP++ K+  N+ +D  VL  YG+ V+ +  DTM ++ + ++      G+ +
Sbjct: 399 LKVLKPLLEDPAVLKIGQNFKYDLGVLSRYGIDVAPYD-DTMLISYVMEAGLH---GHGM 454

Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
           +AL                ++  G+T       I  K+I G  K        +I+     
Sbjct: 455 DALA---------------ELHLGHT------CIPFKEICGTGK-------NQIT----F 482

Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
           +++  ++  L   Y+A D+  TL+L++ LK  L+             K M   Y+   +P
Sbjct: 483 DKVPLDKATL---YAAEDADITLRLWEILKPALV------------AKKMATVYETLERP 527

Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
             ++L KME  G+ VD + L+      R   +         A  H    +  NV S  Q+
Sbjct: 528 MADVLSKMERVGIKVDPDQLN------RLSSDFGQKMMAAEAEAHEAAGRDFNVASPKQI 581

Query: 665 RQLLFG--GKPNSK 676
            ++LFG  G P  K
Sbjct: 582 GEILFGEMGLPGGK 595


>gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|387152325|ref|YP_005701261.1| DNA polymerase I [Desulfovibrio vulgaris RCH1]
 gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1]
          Length = 1015

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/272 (35%), Positives = 143/272 (52%), Gaps = 26/272 (9%)

Query: 801  IDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQ 859
            ++ L S ++ PL    +    GR+H + N + T TGRLS+  PNLQN PA      ++R 
Sbjct: 717  LEKLRSTYLEPL--PKLVDAAGRIHSTFNQLATATGRLSSSNPNLQNIPARGDLGRRMRS 774

Query: 860  AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
             F A  GN L+ ADY Q+ELR+LAH++   ++L AF+ G D H RTA  +Y         
Sbjct: 775  CFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLY--------- 825

Query: 920  GQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTV 979
                      D  P    +D    +RR AK +NF + YG  P  L ++ +++V EAK+ +
Sbjct: 826  ----------DTAP----EDVTPDQRRNAKTINFGLIYGMGPQKLGQELRITVNEAKQFI 871

Query: 980  DLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPV 1039
            + +++  Q +  + +  +  +R   HV TL GR R  P + S     R+   R AINT +
Sbjct: 872  ERYFSRLQHLRNFYDNVEAAAREQGHVTTLAGRRRLLPEMHSENTQLRSQARRQAINTLI 931

Query: 1040 QGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            QGSAAD+   AML    +  L  L  +L+LQV
Sbjct: 932  QGSAADIIKLAMLAAHDDPVLHGLKARLILQV 963


>gi|407892765|ref|ZP_11151795.1| DNA polymerase I [Diplorickettsia massiliensis 20B]
          Length = 901

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/263 (37%), Positives = 137/263 (52%), Gaps = 27/263 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LP Q   ++ K GR+H S +     TGRLS+  PNLQN P   ++  KIR+AFIA PG  
Sbjct: 617  LPQQ---INPKTGRIHTSYHQAAVVTGRLSSSDPNLQNIPIRHEEGRKIRKAFIAAPGYR 673

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            LI ADY Q+ELRI+AH +    +L AF+   D H  TA  ++    +AV T Q       
Sbjct: 674  LIAADYSQIELRIMAHFSQDAGLLHAFQQNLDIHQATASEIFKTPLDAVTTEQ------- 726

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR AK +NF + YG +  GLAR   +   EAK  +D ++     
Sbjct: 727  ----------------RRCAKAVNFGLIYGMSAFGLARQLGIDRTEAKAYIDRYFKRYPG 770

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            V  + E  ++E++   +V TL GR    P I S    Q+   ERAAIN P+QGSAAD+  
Sbjct: 771  VKAYMERTRQEAKAQGYVTTLFGRRLHLPHILSQQTLQQKASERAAINAPLQGSAADIIK 830

Query: 1049 CAMLEISKNARLKELGWKLLLQV 1071
             AM+   +  R ++L   +++QV
Sbjct: 831  KAMIATDQCLRSQKLDATIIMQV 853



 Score = 43.5 bits (101), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 32/52 (61%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSS 475
           +L +  P  E+P+++K+ H+  +D +VL N G+ + G   DT+  + L DS+
Sbjct: 374 VLAQLKPLLENPTLQKIGHHLKYDMNVLANQGITLQGIAFDTLLESYLLDSA 425


>gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|389855570|ref|YP_006357814.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000]
 gi|146345413|sp|O32801.2|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I
 gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 877

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 157/293 (53%), Gaps = 31/293 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 559  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 619  SVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHG 678

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TAM ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 679  ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 717  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQV
Sbjct: 777  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALTERQSKSKLLLQV 829


>gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 917

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 153/307 (49%), Gaps = 33/307 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++  ++ A   E  E  +    L E   +  L S +   LPL    +  + GRVH 
Sbjct: 592  KGAPSTAEEVLA---ELAETYELPQLLMEHRGLAKLKSTYTDKLPLM---IKPQTGRVHT 645

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +     TGRLS+  PNLQN P   +   +IRQAFI   G  L+ ADY Q+ELRI+AHL
Sbjct: 646  SYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCAGYKLVAADYSQIELRIMAHL 705

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +L AF  G D H  TA  ++     AV +                         R
Sbjct: 706  SGDKGLLTAFAEGKDIHKATAAEVFGVALEAVTSDM-----------------------R 742

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA+   +   EA+K +DL++     VL + E  ++++    +
Sbjct: 743  RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQADAQGY 802

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR-LKELG 1064
            V TL GR    P IKS     R   ERAAIN P+QG+AAD+   AM+ +    R +++  
Sbjct: 803  VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDGWIRGIEDQS 862

Query: 1065 WKLLLQV 1071
             ++L+QV
Sbjct: 863  IRMLMQV 869



 Score = 49.3 bits (116), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 66/304 (21%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEA--DFGNGKSCIWVDLLDGGGRDLLN 426
           + A DTE   +D  +   V     + F+I  G  A   FG+      V L +     +L 
Sbjct: 339 LFAFDTETTSLDYMEARVVG----VSFAIEPGKAAYVPFGHDYLGAPVQLTEAV---VLG 391

Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
           +  P  EDP+  KV  N  +D +VL N+G+++ G   DTM  + + +S   T   + +++
Sbjct: 392 KLKPLLEDPARLKVGQNLKYDRNVLLNHGIELQGIAYDTMLESYVLNS---TASRHDMDS 448

Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
           L   R+ ++ +  ++++   KG      + +++   I                       
Sbjct: 449 LA--RRYLNAETISFEEIAGKG------VKQLTFNQI----------------------- 477

Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPF 605
               E E    Y+A D+  TL+L+++L        W KL  +P     +   + E   P 
Sbjct: 478 ----ELEQAAPYAAEDADITLRLHQAL--------WGKLSAEP----GLAKVFSEIELPL 521

Query: 606 GEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLR 665
             +L +ME  G  ++ + L +  +    E E  +    K A  H    +  N+ S  QL 
Sbjct: 522 LPVLARMERLGTTIEPKLLHQQSQ----EIEVRLAELEKQA--HELAGQEFNLSSPKQLG 575

Query: 666 QLLF 669
           ++LF
Sbjct: 576 EILF 579


>gi|407681925|ref|YP_006797099.1| DNA polymerase I [Alteromonas macleodii str. 'English Channel 673']
 gi|407243536|gb|AFT72722.1| DNA polymerase I [Alteromonas macleodii str. 'English Channel 673']
          Length = 930

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/247 (36%), Positives = 136/247 (55%), Gaps = 28/247 (11%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S +   T TGRLS+  PNLQN P   ++  ++RQAF+   GN  + ADY 
Sbjct: 649  INHRTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRVRQAFVPREGNKFVAADYS 708

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                       VP
Sbjct: 709  QIELRIMAHLSGDKGLLDAFAHGKDIHKATASEVFG----------------------VP 746

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            L  +    +RR AK +NF + YG +  GL++   +   EA+K +DL++     VL + ++
Sbjct: 747  L-DEVTTEQRRSAKAINFGLIYGMSAFGLSKQLNIPRNEAQKYMDLYFERYPGVLEYMDS 805

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE-- 1053
             ++ ++   +V T+ GR    P IK+   ++R   ERAAIN P+QG+AAD+   AM++  
Sbjct: 806  TRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINAPMQGTAADIIKMAMIKVD 865

Query: 1054 --ISKNA 1058
              I KNA
Sbjct: 866  DWIRKNA 872


>gi|339007842|ref|ZP_08640416.1| DNA polymerase I [Brevibacillus laterosporus LMG 15441]
 gi|338775045|gb|EGP34574.1| DNA polymerase I [Brevibacillus laterosporus LMG 15441]
          Length = 897

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/257 (35%), Positives = 142/257 (55%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DY 874
            + GK GRVH   N   T TGRLS+  PNLQN P   ++  KIR+AF+    N  I+A DY
Sbjct: 616  IHGKTGRVHTRFNQATTATGRLSSTEPNLQNIPIRLEEGRKIRKAFVPTNDNCYILAADY 675

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRILAH++   +++DAF    D H+RTAM+++    + V +               
Sbjct: 676  SQIELRILAHISKDPNLIDAFVNNMDIHTRTAMDVFGVSEDEVTSNM------------- 722

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                      RR+AK +NF I YG +  GL+++  +  +EA + +  +++    V  + E
Sbjct: 723  ----------RRQAKAVNFGIVYGISDFGLSQNLNIPRKEAAEFIARYFDVFSGVQNYME 772

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              K +++ D +V TLL R R  P I S   + R+  ER A+NTP+QG+AAD+   AM+++
Sbjct: 773  EIKHQAKKDGYVTTLLHRRRYLPDIASRNFNLRSFAERTAMNTPIQGTAADIIKLAMIQM 832

Query: 1055 SKNARLKELGWKLLLQV 1071
             +     +L  ++LLQV
Sbjct: 833  QEALVRNQLKSRMLLQV 849


>gi|387825251|ref|YP_005824722.1| DNA polymerase I [Francisella cf. novicida 3523]
 gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523]
          Length = 897

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/236 (39%), Positives = 133/236 (56%), Gaps = 24/236 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            N RVH S N   T TGRLS+  PNLQN P    +  KIR+AFIA  G  ++ ADY Q+EL
Sbjct: 620  NSRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIEL 679

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K++L AF    D HS TA              +VL    G D        +
Sbjct: 680  RIMAHLSKDKNLLKAFNQSLDIHSATA-------------AEVL--GIGID--------E 716

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
              + +RRKAK +NF + YG +  GLA+  ++   EA++ +D+++N    V  +    K+ 
Sbjct: 717  VSSEQRRKAKAINFGLIYGMSAFGLAKQLEIPRAEAQEYIDIYFNRYPSVKEYMTTAKEF 776

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            ++ + +V T+LGR    P I S    QRN  ERAAIN P+QG+AAD+   AM++++
Sbjct: 777  AKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADIIKKAMIDVN 832



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 99/248 (39%), Gaps = 60/248 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L++  P F D    KV HN+ FD  VL  Y ++++G   DTM MA +  SS    G + 
Sbjct: 371 VLDKLKPLFADVKKAKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSS----GKHD 426

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+                                K+  G   +     AG   T   
Sbjct: 427 MDSLS--------------------------------KEHLGIEPIAYTAIAG---TGKH 451

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            + L + + E+   Y+A D+  T +L+    K LLE            ++++  Y E   
Sbjct: 452 QQTLDQIDIEIVAKYAAEDADITFRLFNHF-KALLEQD----------ETLYKLYCEIEM 500

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
           P   IL +ME  G+ +D   L         +Q A++    K     C +   +  N+ S 
Sbjct: 501 PLTIILNQMEKTGVKIDATKL--------IQQSASLETSIKELESKCYNLAGQEFNLSSP 552

Query: 662 TQLRQLLF 669
            QLR++LF
Sbjct: 553 VQLREILF 560


>gi|381190626|ref|ZP_09898144.1| DNA polymerase I [Thermus sp. RL]
 gi|380451509|gb|EIA39115.1| DNA polymerase I [Thermus sp. RL]
          Length = 831

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 155/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL G  V  + GR+H   N   T TGRLS
Sbjct: 516  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLPGL-VHPRTGRLHTRFNQTATATGRLS 574

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 575  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 634

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 635  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 671

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   +D ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 672  MSAHRLSQELSIPYEEAVAFIDRYFKSFPKVKAWIERTLEEGRQRGYVETLFGRRRYVPD 731

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 732  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLREMGARMLLQV 782


>gi|398830519|ref|ZP_10588705.1| DNA polymerase I [Phyllobacterium sp. YR531]
 gi|398213956|gb|EJN00540.1| DNA polymerase I [Phyllobacterium sp. YR531]
          Length = 1002

 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/292 (36%), Positives = 143/292 (48%), Gaps = 28/292 (9%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  +  T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY Q+ELR+
Sbjct: 724  RVHTSYAMAATSTGRLSSSEPNLQNIPVRTSEGRKIRTAFIAAPGNKLISADYSQIELRV 783

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF    D H+ TA  M+                       VP+  +  
Sbjct: 784  LAHVAEIPQLTQAFADSIDIHAMTASEMF----------------------GVPV--EGM 819

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +  EEA + +  +++    +  + EA K  +
Sbjct: 820  PSEVRRRAKAINFGIIYGISAFGLANQLSIPREEASQYIRTYFDRFPGIKDYMEATKAFA 879

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   +P I+S     R   ERAAIN P+QGSAAD+   AM+ +      
Sbjct: 880  RQHGYVETIFGRRAHYPEIRSSNPQLRAFNERAAINAPIQGSAADIIRRAMVRMDAALVE 939

Query: 1061 KELGWKLLLQVL--FFFSFSFFSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
             +L  ++LLQV     F  S   +   +     V+ NA  P    S  L  D
Sbjct: 940  AKLSARMLLQVHDELVFETSDEEVDATLPVIREVMENAAMPAISLSVPLQVD 991



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 104/243 (42%), Gaps = 61/243 (25%)

Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
           P  ED S+ K+ H+  ++  V+  +G+ +     DTM ++ + D+    EG +S+++L  
Sbjct: 478 PMLEDASVLKIAHSMKYEWLVMHRHGIDLRPVD-DTMLISYVLDAG---EGHHSMDSLC- 532

Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
           DR                      ++G   ++ KD+ G         +GK S      E+
Sbjct: 533 DR----------------------WLGHKPLAYKDLIG---------SGKSSLTFDKVEI 561

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
           +R        Y+A D+  TL+L++ LK +L+      DG       +   Y+   +P   
Sbjct: 562 ERA-----TEYAAEDADVTLRLWRLLKPRLVA-----DG-------LASVYERLERPLIP 604

Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
           +L +ME  G+ VDR+ LS +         A      K A +       +N+GS  Q+  +
Sbjct: 605 VLARMEERGISVDRQILSRLSGDLAQSAAAIEEEIYKLAGEK------INIGSPKQMGDI 658

Query: 668 LFG 670
           LFG
Sbjct: 659 LFG 661


>gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
            25017]
 gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
            25017]
          Length = 896

 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/236 (38%), Positives = 131/236 (55%), Gaps = 24/236 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            NGRVH S N   T TGRLS+  PNLQN P    +  KIRQAF+A     ++ ADY Q+EL
Sbjct: 619  NGRVHTSYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIRQAFVAEQEFCVVAADYSQIEL 678

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K++L AF  G D HS TA  +     + V + Q                  
Sbjct: 679  RIMAHLSKDKNLLKAFNQGLDIHSATAAEVLGISLDMVTSEQ------------------ 720

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RR+AK +NF + YG +  GLA+  ++   EA++ +D+++N    V  +    K+ 
Sbjct: 721  -----RRRAKAINFGLIYGMSAFGLAKQLEIPRGEAQEYIDVYFNRYPSVKEYMTTAKEF 775

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            ++ + +V T+LGR    P I S    QRN  ERAAIN P+QG+AAD+   AM++++
Sbjct: 776  AKQNGYVETILGRRLYLPDISSKNVIQRNAAERAAINAPMQGTAADIIKKAMIDVN 831



 Score = 48.5 bits (114), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 96/248 (38%), Gaps = 60/248 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L+   P F D    KV HN+ FD  VL  YG+K+     DTM MA +  SS    G + 
Sbjct: 370 VLDILKPIFVDSQKSKVAHNFKFDEKVLSKYGVKIVNQVNDTMIMAYVLKSS----GKHD 425

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+ +   +  +  AY        T  G           GR +L  D           
Sbjct: 426 MDSLSKEH--LGIEPIAY-------TTLAG----------TGRNQLTLDQ--------ID 458

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
           +E++ +        Y+A D+  T +LY    K L +            + ++  Y     
Sbjct: 459 IEKVAK--------YAAEDADITFRLYNHFLKMLKD-----------DEVLYSLYSNVEM 499

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
           P   IL  ME  G+ +D   L         EQ A +    K     C D   +  N+ S 
Sbjct: 500 PLTIILNNMERIGVKIDATKL--------IEQSANLEDSIKELEIKCYDLAGQEFNLSSP 551

Query: 662 TQLRQLLF 669
            QLR++LF
Sbjct: 552 VQLREILF 559


>gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
          Length = 949

 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 149/292 (51%), Gaps = 25/292 (8%)

Query: 781  TEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNINT-ETGRLSA 839
            T Q+ R     I  + E   +  L+S ++  L    ++ K  ++H S N     TGRLS+
Sbjct: 634  TLQKLRNRHPIIKLILEHRGLKKLLSTYVEALP-KLINPKTNKIHTSFNQTVVSTGRLSS 692

Query: 840  RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
              PNLQN P  +    +IR+AFIA PG  L+ ADY Q+ELRI+AHL+  ++ML AF +G 
Sbjct: 693  SNPNLQNIPVRDDYGREIRKAFIAEPGCVLLSADYSQVELRIMAHLSGDRNMLSAFASGQ 752

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H+ TA  ++                    K P+   ++  +  RRKAK  NF I YG 
Sbjct: 753  DIHAATAARIF--------------------KVPI---EEVTSDMRRKAKTANFGIIYGI 789

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            +  GL+    +  +EA   +D ++    +V  + E   +E+R +  V TL GR    P I
Sbjct: 790  SAFGLSERLDIPRKEAAALIDGYFESFPDVKRYMEQAIEEARRNGSVQTLFGRKLYLPDI 849

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             S     R   ER AIN P+QG+AAD+   AM+++ +  R      +++LQV
Sbjct: 850  NSQNAGVRGFAERIAINAPIQGTAADIIKIAMIKVDEAIRHHNYRSQMMLQV 901



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 95/247 (38%), Gaps = 51/247 (20%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           ++L  FAP  ED SI+K   N  +D  VL NYG+ V G   DTM    L     R    Y
Sbjct: 416 EILRRFAPLLEDASIEKTGQNMKYDISVLGNYGIGVGGRMFDTMIAHYLLQPELRHNMDY 475

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
             E   G R                          I   ++F   K KK G         
Sbjct: 476 MAEVFLGYR-------------------------TIHFGELFDDDKTKKSGK-------- 502

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
           P+E++++ E      Y+  D+  TL+L     +KL E S K            + + +  
Sbjct: 503 PIEDIRKVELGKLKDYACEDADITLQLKNIFGQKLCESSLK------------NLFFDIE 550

Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
            P   IL KME+ G+L+D   L+   +  + E +        +     P    +N+ S  
Sbjct: 551 MPLVPILAKMESNGVLIDDFALASYAETLKRELQKIERDILAYVD--LP----INISSPK 604

Query: 663 QLRQLLF 669
           Q+ +LLF
Sbjct: 605 QIGELLF 611


>gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
            12653]
 gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
            12653]
          Length = 635

 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 162/302 (53%), Gaps = 37/302 (12%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSL-NI 830
            ++T+ E  E      D +S + E   +  L S +I   LPL       +N RVH +   +
Sbjct: 314  YSTDSEVLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMD-----ENDRVHSNFKQM 368

Query: 831  NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCK 889
               TGR+S+  PNLQN P  E+   +IR+AFI    +  IV ADY Q+ELR+LAHL+  +
Sbjct: 369  VAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHLSEDE 428

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
             +++AF    D H RTA  ++                     PP    ++     RR AK
Sbjct: 429  KLIEAFMNNEDIHLRTASEVFKV-------------------PP----QNVTPEMRRAAK 465

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
            ++NF I YG +  GLA+D K+S +EAK+ +D ++ + + V  + E   + ++ + +V T+
Sbjct: 466  VVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTI 525

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            + R R  P I S   +QR+  ER A+NTP+QGSAAD+   AM+++ +  +   L  +L+L
Sbjct: 526  MNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLIL 585

Query: 1070 QV 1071
            QV
Sbjct: 586  QV 587


>gi|410943843|ref|ZP_11375584.1| DNA polymerase I [Gluconobacter frateurii NBRC 101659]
          Length = 930

 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/250 (36%), Positives = 139/250 (55%), Gaps = 24/250 (9%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  +  T TGRLS+  PNLQN P   ++   IR+AF+A PG+ L+ ADY Q+ELR+
Sbjct: 656  RVHTSFQMAITTTGRLSSNEPNLQNIPIRTEEGALIRKAFVAAPGHVLVSADYSQIELRL 715

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A  + +L+AF  G D H+RTA  ++             +   G D    PL     
Sbjct: 716  LAHVAKIEPLLEAFHLGQDIHARTASEVFG------------IPIEGMD----PL----- 754

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GL R  ++S  EA+  +D ++     +  + +  K+E++
Sbjct: 755  --TRRRAKAINFGIIYGISAFGLGRQLQISPGEARSYIDAYFARYPGIRAYMDRTKEEAK 812

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T  GR    P IK    ++R++ ER AIN P+QG AAD+   AM+ +++     
Sbjct: 813  EHGYVLTPFGRRCYVPGIKDKNGARRSYAERQAINAPLQGGAADIIKRAMVRLARKLPET 872

Query: 1062 ELGWKLLLQV 1071
            +L  ++LLQV
Sbjct: 873  DLKAQMLLQV 882


>gi|398813590|ref|ZP_10572284.1| DNA polymerase I [Brevibacillus sp. BC25]
 gi|398038396|gb|EJL31560.1| DNA polymerase I [Brevibacillus sp. BC25]
          Length = 882

 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 155/282 (54%), Gaps = 26/282 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            I A+     +  L S +I  L    +  K  +VH   N   T TGRLS+  PNLQN P  
Sbjct: 577  IDAILIFRQLGKLRSTYIEGLT-KEIHTKTSKVHTLYNQATTATGRLSSTDPNLQNIPIR 635

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  KIR+AFI +  G  ++ ADY Q+ELRILAH++  ++++DAF+ G D H+RTAM++
Sbjct: 636  MEEGRKIREAFIPSEDGWYMLAADYSQIELRILAHISQDENLIDAFQKGMDIHTRTAMDV 695

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +                 G  K  V  L       RR+AK +NF I YG +  GL+++  
Sbjct: 696  F-----------------GVSKEEVTSLM------RRQAKAVNFGIVYGISDYGLSQNLN 732

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ +EA   ++ +++    V  W +   ++++ D +V TLL R R  P I+S   + R+ 
Sbjct: 733  ITRKEAGDFIERYFDVFSGVKRWMDEIVQQAKADGYVTTLLNRRRYLPDIRSSNFNLRSF 792

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             ER A+NTP+QG+AADV   AM+ + +    K L  ++LLQV
Sbjct: 793  AERTAMNTPIQGTAADVIKLAMIRMQEAIEEKGLASRMLLQV 834


>gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14]
 gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14]
          Length = 920

 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 156/309 (50%), Gaps = 33/309 (10%)

Query: 779  FATEQEAREACDAISALCEVC----SIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-IN 831
            + T +E  ++  A + + E       +  L+S ++  LP   + ++ + G +H S N   
Sbjct: 599  YVTSEEVLQSIRAKNPIVENILNYRGMKKLLSTYVDNLP---TLINKRTGHIHTSFNQAL 655

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P    D  +IR+ FI  PG     ADY Q+ELRI+AHL+  ++M
Sbjct: 656  TATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSGDENM 715

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AF+ G D H  TA  +                WH E       +     S+R+KAK  
Sbjct: 716  IEAFREGFDIHRATAAKI----------------WHEE-------IDKVTDSQRKKAKQA 752

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG T  GLA+   +S  EAK  +  ++    +V  + E  K+ +R + +  T+ G
Sbjct: 753  NFGIIYGITTYGLAQRMNISNSEAKDLITDYFKTFPKVQAYMEKAKEAARKNGYAETIFG 812

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R    I S   + R   ER AIN P+QGS AD+   AM++I    R + +  K++LQV
Sbjct: 813  RRRYLADINSHNGTVRGFAERNAINAPIQGSEADIIKVAMIKIWNRFRQEGIKSKMILQV 872

Query: 1072 LFFFSFSFF 1080
                +FS +
Sbjct: 873  HDELNFSVY 881


>gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1]
          Length = 968

 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 140/265 (52%), Gaps = 32/265 (12%)

Query: 808  FILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG 866
            +ILP        + GRVH + ++  T TGRLS+  PNLQN P    +  KIR AFIA  G
Sbjct: 683  YILP--------ETGRVHTNYSLATTSTGRLSSSEPNLQNIPIRTPEGRKIRTAFIAPKG 734

Query: 867  NSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW 926
              L+ ADY Q+ELRILAH+AN  ++ +AF    D H+ TA  ++           V +E 
Sbjct: 735  CVLLSADYSQIELRILAHIANITALKEAFAQDQDIHAITASQIF----------GVAVEG 784

Query: 927  HGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNER 986
               D              RR+AK +NF I YG +  GLA    +S  EA + +D+++   
Sbjct: 785  MPSDI-------------RRRAKAINFGIIYGISAFGLANQLSISRNEASRYIDIYFERF 831

Query: 987  QEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADV 1046
              +  + E  K  +R   +V T+ GR   +P IK+     R   ERAAIN P+QGSAAD+
Sbjct: 832  PGIKDYMETTKSFARQHGYVETIFGRRIHYPEIKATNSQIRTFNERAAINAPIQGSAADI 891

Query: 1047 AMCAMLEISKNARLKELGWKLLLQV 1071
               AM+++    + ++L  K+LLQV
Sbjct: 892  IRRAMIQMEGALKKEKLSAKMLLQV 916



 Score = 48.9 bits (115), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 135/332 (40%), Gaps = 82/332 (24%)

Query: 415 DLLDGG-------GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
           DLL GG        + +L    P  ED ++ K+ +N  ++  +++ Y +    F  D M 
Sbjct: 422 DLLGGGCVVTQIETQKVLALLKPILEDQAVLKIGYNMKYNWLIMKQYAIVTQPFD-DIML 480

Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527
           ++   D+   T           +R ++SE    ++               I+ KD+    
Sbjct: 481 ISYALDAGTSTH----------NRDILSERWLKHKP--------------IAYKDLTHNG 516

Query: 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGK 587
           K        KI++ A V+  Q         Y+A  +  TL+L++ LK +L+         
Sbjct: 517 K--------KITSFAQVDLKQAT------FYAAEGADITLRLWQVLKPQLV--------- 553

Query: 588 PVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIE-KVARAEQEAAVNRFRKWA 646
               + +   Y+   +P  E+L KME  G+LVDR+ LS +  ++A+A        ++   
Sbjct: 554 ---AQGVTKIYERLDRPLIEVLAKMEERGILVDRQILSRLSCELAQAALSLEEEIYQLVG 610

Query: 647 SKHCPDAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGK 701
            +        N+ S  QL  +LFG     G   +K+   S   + +      E + AEG 
Sbjct: 611 ER-------FNIASPKQLSDILFGKMGLPGGVKTKNGQWSTSAQIL------EELAAEGH 657

Query: 702 KTPSK---FRNIT-LRSIGVD-LPTEMYTATG 728
             P K   +R +T L+S   D LP  +   TG
Sbjct: 658 TLPRKIVDWRQLTKLKSTYTDALPYYILPETG 689


>gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
 gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
          Length = 920

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/265 (35%), Positives = 139/265 (52%), Gaps = 24/265 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +  +   +H S N   T TGRLS+  PNLQN P   +D  +IR+ F+  PG     ADY 
Sbjct: 640  IHKRTQHIHTSFNQALTATGRLSSSDPNLQNIPVRSEDGKEIRKCFVPEPGCLFFSADYS 699

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  ++M++AF+ G D H+ TA  +                WH +      
Sbjct: 700  QIELRIMAHLSGDENMIEAFREGFDIHAATAAKI----------------WHKQ------ 737

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             + D    ER+KAK  NF I YG T  GLA+   +  +EA+  ++ ++    +V  + E 
Sbjct: 738  -IADVTPEERKKAKQANFGIIYGITTYGLAQRMGIDNKEARMLIEDYFTTFPKVKAYMEQ 796

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K+E+R   +  TL GR R  P I S   + R   ER AIN P+QGS AD+   AM+ I 
Sbjct: 797  AKEEARQKGYAVTLFGRRRYLPDINSKNGTVRGFAERNAINAPIQGSEADIIKIAMIRIW 856

Query: 1056 KNARLKELGWKLLLQVLFFFSFSFF 1080
            +  + + +  K++LQV    +FS +
Sbjct: 857  QRFKAENIRSKMILQVHDELNFSVY 881



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 146/393 (37%), Gaps = 84/393 (21%)

Query: 283 ECFEDGSSYTPPPKLVSFKRSNQK--NPKNDA-AEGTGQNKKASENENSEKLEILRSKLA 339
           E F D    T   K+++     QK  N + D  A+    ++ +SEN + E L+ ++ +  
Sbjct: 270 EIFADLEFKTLANKILNKTEQKQKSVNVERDLFADIPSNSQVSSENASFESLKTIKHEYK 329

Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
                  ++DN   A+++      K    + + DTE    D  +   V     +CF++  
Sbjct: 330 -------LIDNQEEAQRICDFFKTKQ---ILSLDTETTSTDAIEAELVG----LCFAV-- 373

Query: 400 GPEADFGNGKSCIWVDLLDGGGRDL--LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLK 457
                        +V + +   + L  +N F   +EDPSI K+  N  +D  VL+NYG+ 
Sbjct: 374 -------EEHKAFYVAIPNDRKQALQYVNIFKSVYEDPSILKIGQNIKYDYEVLKNYGVT 426

Query: 458 VSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK 517
           + G   DTM    +     R    Y  E L   + +  E+         K          
Sbjct: 427 LQGKMFDTMLAHYVLQPELRHNMDYMAETLLNYKTIHIEELIGAPGKHQK---------- 476

Query: 518 ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKL 577
            SM+D                  IAP         E    Y A D+  TL+L   L+ KL
Sbjct: 477 -SMRD------------------IAP---------EDAYEYGAEDADITLQLRNVLEPKL 508

Query: 578 LEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEA 637
            E+            +M   + +   P   +L  ME  G+ VD   L +  ++       
Sbjct: 509 KEV------------AMEALFWDIETPLIPVLADMELNGVRVDTATLHDTAEIFTER--- 553

Query: 638 AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
            +NR  +   +   +    N+ S  Q+  +LFG
Sbjct: 554 -MNRLERHIYEEAGET--FNIASPKQVGDILFG 583


>gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
 gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
          Length = 1001

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 167/344 (48%), Gaps = 29/344 (8%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
            GA +++ ++   E  A E     S + E   +  L S +   L G  ++ +  RVH S +
Sbjct: 673  GAWSTSAQVL--EDLAAEGHPLPSKIVEWRQLSKLKSTYTDALPGY-INPETKRVHTSYS 729

Query: 830  IN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
            +  T TGRLS+  PNLQN P   +   KIRQAFIA  G  LI ADY Q+ELR+LAH+A+ 
Sbjct: 730  LAATTTGRLSSSEPNLQNIPVRTEAGRKIRQAFIAEKGQKLISADYSQIELRVLAHMADI 789

Query: 889  KSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKA 948
              +  AF+ G D H+ TA  M+      +E         G D    P++       RR+A
Sbjct: 790  PQLKKAFEDGLDIHAMTASEMF---GTPIE---------GMD----PMV-------RRQA 826

Query: 949  KMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHT 1008
            K +NF I YG +  GLA    +S  EA   +  ++     +  + EA KK+   D +V T
Sbjct: 827  KAINFGIIYGISAFGLANQLGISRGEAGDYIKTYFQRFPGIKDYMEAVKKQVHADGYVTT 886

Query: 1009 LLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLL 1068
            + GR   +P + +   + R   ERAAIN P+QGSAAD+   AM+ +       +L  ++L
Sbjct: 887  IFGRKAHYPEVNTKNPNMRAFYERAAINAPIQGSAADILRRAMVRMEDRLTASKLDAQML 946

Query: 1069 LQVL--FFFSFSFFSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
            LQV     F      +   +     V+ NA  P    S  L  D
Sbjct: 947  LQVHDELIFEVPEDQVEATIPLIKDVMENACDPALKFSVPLQVD 990



 Score = 48.5 bits (114), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 99/258 (38%), Gaps = 63/258 (24%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D L    P  ED  I K+  N  +D  V+  +G+ V  +  DTM ++   D+ +   GG 
Sbjct: 470 DALKALKPMLEDRGILKIAQNLKYDWLVMTRHGVDVDPYD-DTMLLSYTVDAGK---GGN 525

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIST 540
            ++ L+                       E ++G   I  K++ G  K          S 
Sbjct: 526 GMDELS-----------------------ERWLGHKPIPFKEVCGSGK----------SM 552

Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
           I       +   +   +Y+A D+  TL+L+ +LK +L                M   Y+ 
Sbjct: 553 IT----FDKVAIDKATAYAAEDADVTLRLWLTLKPRLAS------------DHMATVYET 596

Query: 601 YWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
             +P   +L +ME  G+ VDR+ LS +         A  +   + A       +  NVGS
Sbjct: 597 LERPMVPVLARMEKRGISVDRQMLSRLSGDFAQGAAALESEIYELA------GETFNVGS 650

Query: 661 DTQLRQLLFG--GKPNSK 676
             QL  +LFG  G P  K
Sbjct: 651 PKQLGDILFGKMGLPGGK 668


>gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium hydrogeniformans]
 gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium hydrogeniformans]
          Length = 880

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 155/282 (54%), Gaps = 29/282 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            IS   E+  + S   + + PL    ++ + G++H S N + T TGRLS+  PNLQN P  
Sbjct: 570  ISEYRELAKLKSTYIDSLPPL----INSETGKIHTSFNQMVTATGRLSSTNPNLQNIPIR 625

Query: 851  EKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AFI    N +++A DY Q+ELR+ AHL+  K + +AF +G D H+ TA  +
Sbjct: 626  TEEGREIRKAFIPSSDNMILLAVDYSQIELRVFAHLSGDKRLKEAFNSGRDIHTETASEI 685

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +      VE  QV         P +          RR AK++NF +AYG +  GL++D  
Sbjct: 686  F-----EVEAEQV--------SPNL----------RRHAKVINFGLAYGMSAYGLSQDLD 722

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            + VEEA+  +D ++     V  + +   ++ +   +  TL GR R  P I S    +R+ 
Sbjct: 723  IPVEEAQDYIDKYFERFSGVKKYMDETIQKVKEKGYAETLYGRKRYIPEINSSNYHRRSF 782

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             ER+AINTPVQG+AAD+   +ML++  + +  +L   +LLQV
Sbjct: 783  AERSAINTPVQGTAADIMKKSMLDVYDSLKDIDLEINILLQV 824


>gi|408792976|ref|ZP_11204586.1| DNA-directed DNA polymerase [Leptospira meyeri serovar Hardjo str.
            Went 5]
 gi|408464386|gb|EKJ88111.1| DNA-directed DNA polymerase [Leptospira meyeri serovar Hardjo str.
            Went 5]
          Length = 939

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 161/300 (53%), Gaps = 33/300 (11%)

Query: 779  FATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            ++T+    E+       I  L E+     L S +   L  + ++ K GR+H S N     
Sbjct: 618  YSTDHSVLESLQGTHPIIDDLLEIRKFSKLKSTYTDTLP-TLINPKTGRIHTSYNQTIAA 676

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  +++   +R+ FIA  G  ++  DY Q+ELRI+AH AN   M+D
Sbjct: 677  TGRLSSTNPNLQNIPIKDEEGRLLRKGFIAKKGFEILSLDYSQIELRIMAHFANDPQMMD 736

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            A+K+G D H RTA  ++      V   +V  +                   R KAK++NF
Sbjct: 737  AYKSGVDIHKRTAAGIF-----GVPEDKVTPDM------------------RNKAKVVNF 773

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
            S+ YG T  GL+ + ++S +EAK+ ++ ++   + V T+ E   +  +   +V TLLGR 
Sbjct: 774  SVIYGVTSFGLSNNLRISRKEAKEFIEKYFATYKGVQTYMEEIVEFCKEHGYVETLLGRR 833

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
            R  P I S  +      +R AIN+P+QG++AD+   AM++I  + ++K+ G+  KLLLQV
Sbjct: 834  RYLPDIHSKHKMASEAAKRVAINSPIQGTSADMIKLAMIQI--HNKIKKNGYRSKLLLQV 891



 Score = 42.4 bits (98), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 35/296 (11%)

Query: 205 GAVGGHPKNHPGSVMAVTKQVTGSEEKSEDFVNDQI---PLDKMTN---MECLRYEKEVA 258
           G +G    N PG V  V ++  G+ +  ++F N +     LD++ N   ++ L  +KE A
Sbjct: 184 GLLGDASDNIPG-VKGVGEK--GAAKLIQEFGNLETIYKKLDQVKNKSLIDKLAADKENA 240

Query: 259 EYQERKGATVLTVPNLSDFRNSEIECFEDGSSYTPPPKLVSFKRSNQKNPKNDAAEGTG- 317
            +  RK AT++T   L D + ++++      +Y  P K+  FK         D A+  G 
Sbjct: 241 -FLSRKLATIVTNLKL-DIKKNDLKL----PNYHEPAKVQYFKDEGYNVLHRDLAKQAGI 294

Query: 318 --QNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHL--VHACD 373
              +   S+++++EK    + K ++   +V+  +  +   K   +    YK +  +    
Sbjct: 295 PIASDGDSKDKSAEKEPTKKGKKST--KDVVDAETENKPNKGSAVTKKNYKRIQTLDELK 352

Query: 374 TEVAKIDVKQETPVDH---------GEVICFSIYSGPEADFGNGKS---CIWVDLLDGGG 421
             VAK+D K+   VD           E++  S    P   +    S    I+  LL    
Sbjct: 353 KIVAKLDPKKPISVDTETTSQDPMLAELLGLSFSQEPGVGYYIAFSHPESIYSHLLPSP- 411

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
            + L    P   D   KKV  N  +D  VL NYG++++G H DTM  + L +   R
Sbjct: 412 EEGLGVLKPMLSDSKWKKVGQNIKYDLLVLRNYGVELAGIHFDTMLASYLLNPGER 467


>gi|392539918|ref|ZP_10287055.1| DNA polymerase I [Pseudoalteromonas marina mano4]
          Length = 911

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/248 (38%), Positives = 135/248 (54%), Gaps = 27/248 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  
Sbjct: 626  LPLM---VNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L+AF  G D HS TA  ++                 G
Sbjct: 683  IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF-----------------G 725

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
             D      L D     RRKAK +NF + YG +  GLAR   V   EA+  +D ++     
Sbjct: 726  VD------LDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPG 779

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+  
Sbjct: 780  VLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIK 839

Query: 1049 CAMLEISK 1056
             AML +++
Sbjct: 840  KAMLSVNQ 847


>gi|359451863|ref|ZP_09241241.1| DNA polymerase I [Pseudoalteromonas sp. BSi20480]
 gi|358042321|dbj|GAA77490.1| DNA polymerase I [Pseudoalteromonas sp. BSi20480]
          Length = 911

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/248 (38%), Positives = 135/248 (54%), Gaps = 27/248 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  
Sbjct: 626  LPLM---VNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L+AF  G D HS TA  ++                 G
Sbjct: 683  IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF-----------------G 725

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
             D      L D     RRKAK +NF + YG +  GLAR   V   EA+  +D ++     
Sbjct: 726  VD------LDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPG 779

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+  
Sbjct: 780  VLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIK 839

Query: 1049 CAMLEISK 1056
             AML +++
Sbjct: 840  KAMLSVNQ 847


>gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
 gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
          Length = 874

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/263 (36%), Positives = 141/263 (53%), Gaps = 31/263 (11%)

Query: 814  GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG---NSL 869
            G+ +    GRVH S N   T TGRLS+  PNLQN P   ++   +R  F   PG   ++L
Sbjct: 590  GALIRPATGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRAVRALF--TPGEGYDAL 647

Query: 870  IVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGE 929
            + ADY Q+ELRILAH++   +++DAF+ G D H+RTA  ++                   
Sbjct: 648  LSADYSQIELRILAHMSGDATLIDAFRHGQDIHARTAAEVFG------------------ 689

Query: 930  DKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                VPL  DA   E RR+AK +NF I YG +  GLARD  +   EA   +D ++     
Sbjct: 690  ----VPL--DAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREAGGYIDRYFERYHG 743

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            V T+ +    ++  + +V TL GR R  PA+ S    QR+  ER A+NTP+QG+AAD+  
Sbjct: 744  VRTFLDKIVADAHTNGYVTTLYGRRRALPALASRNYMQRSFAERMAMNTPIQGTAADLIK 803

Query: 1049 CAMLEISKNARLKELGWKLLLQV 1071
             AM+      +  ++  ++LLQV
Sbjct: 804  IAMVRAYDALQAADVKSRILLQV 826


>gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
 gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
          Length = 932

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/246 (39%), Positives = 134/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  S VSG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLMISPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYR 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF AG D H  TA  ++                  
Sbjct: 704  IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVF------------------ 745

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 +PL K     +RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 746  ----GLPLEK-VTHEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 801  VLEYMERTRKQAADQGYVTTLDGRRLYLPEIHSRNATRRKAAEREAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 861  RAMIAV 866


>gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
            3'->5' polymerase; 3'->5' exonuclease (C-terminal)
            [Alteromonadales bacterium TW-7]
 gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
            3'->5' polymerase; 3'->5' exonuclease (C-terminal)
            [Alteromonadales bacterium TW-7]
          Length = 911

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/248 (38%), Positives = 135/248 (54%), Gaps = 27/248 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  
Sbjct: 626  LPLM---VNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L+AF  G D HS TA  ++                 G
Sbjct: 683  IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF-----------------G 725

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
             D      L D     RRKAK +NF + YG +  GLAR   V   EA+  +D ++     
Sbjct: 726  VD------LDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPG 779

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+  
Sbjct: 780  VLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIK 839

Query: 1049 CAMLEISK 1056
             AML +++
Sbjct: 840  KAMLSVNQ 847


>gi|429124206|ref|ZP_19184738.1| DNA polymerase I [Brachyspira hampsonii 30446]
 gi|426279936|gb|EKV56955.1| DNA polymerase I [Brachyspira hampsonii 30446]
          Length = 926

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 138/257 (53%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ K GR+H S N   T TGRLS+  PNLQN P   ++  +IR  FIA  GN LI ADY 
Sbjct: 645  INEKTGRIHASFNQTVTATGRLSSSEPNLQNIPVRGEEGREIRNTFIAEKGNLLIAADYS 704

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH +N  ++++AFK   D H +TAM +Y   ++ V                  
Sbjct: 705  QIELRLLAHFSNDPALVEAFKNNDDIHRKTAMKIYSVSKDHVT----------------- 747

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                  AS R  AK++NFSI YGKT  GL+++  +  +EA+  +  +++    V  + E 
Sbjct: 748  ------ASMRNTAKIINFSIIYGKTAFGLSKELGIKRKEAEDFIKGYFSTYSRVKPFCEE 801

Query: 996  RKKESRIDNHVHTLLGRARRFP-AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              +E R   +V T+ GR R     I S     RN  ER A+NT +QGSAAD+   AM+ I
Sbjct: 802  VVEEVRNKGYVRTMCGRIRDLSKTINSSNSMARNEAERMALNTLIQGSAADMIKVAMVAI 861

Query: 1055 SKNARLKELGWKLLLQV 1071
             K  +      K+++QV
Sbjct: 862  HKEFKNHLKTAKIVMQV 878


>gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1]
 gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1]
          Length = 968

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 145/268 (54%), Gaps = 32/268 (11%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR AF+A
Sbjct: 680  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFVA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
               + L+ ADY Q+ELRILAH+AN  ++ +AF  G D H+ TA  ++           V 
Sbjct: 732  PKRHVLLSADYSQIELRILAHIANITALKEAFSRGQDIHAITASQIF----------GVA 781

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
            +E    D              RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 782  IEGMPSDI-------------RRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R + +V T+ GR   +P IK+ +   R+  ERAAIN P+QGSA
Sbjct: 829  ERFPGIKDYIETTKTFARQNGYVETIFGRRIHYPEIKAASPQVRSFNERAAINAPIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AD+   AM+++      ++L  K+LLQV
Sbjct: 889  ADIIRRAMIQMEDALEKEKLSAKMLLQV 916



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 128/315 (40%), Gaps = 84/315 (26%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPE------ADFGNGKSCIWVDLLDGG---- 420
           A DTE   +D     P+   +++ FS+   PE       +   G++    DLL GG    
Sbjct: 382 AFDTETTSLD-----PI-QAKLVGFSLALQPEKAAYVPLEHVEGEN----DLLKGGRIVS 431

Query: 421 ---GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
               +  L    P  ED ++ K+  N  +D  V++ YG+ +  F  DTM ++        
Sbjct: 432 QIETQKALTLLKPILEDQAVLKIGQNIKYDWLVMKQYGIVIHCFD-DTMLLS-------- 482

Query: 478 TEGGYSLEA--LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSA 535
               Y+LEA  LT +   +SE    ++               I+ KD+    K       
Sbjct: 483 ----YALEAGTLTHNMNALSERWLGHKP--------------IAYKDLTHNGK------- 517

Query: 536 GKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMF 595
            KI++ A V+  Q         Y+A D+  TL+L++ LK +L+             + M 
Sbjct: 518 -KITSFAEVDLKQA------TLYAAEDADITLRLWQVLKPQLV------------AQGMT 558

Query: 596 DFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKY 655
             Y+   +P  E+L +ME  G+LVDR+ L       R   E A   F      +    + 
Sbjct: 559 RIYERLDRPLIEVLARMEERGILVDRQIL------LRLSGELAQAAFILEEEIYQLSGEK 612

Query: 656 MNVGSDTQLRQLLFG 670
            N+ S  QL  +LFG
Sbjct: 613 FNLASPKQLGDILFG 627


>gi|392429448|ref|YP_006470462.1| DNA polymerase I [Streptococcus intermedius JTH08]
 gi|419776905|ref|ZP_14302824.1| DNA-directed DNA polymerase [Streptococcus intermedius SK54]
 gi|383845590|gb|EID82993.1| DNA-directed DNA polymerase [Streptococcus intermedius SK54]
 gi|391758597|dbj|BAM24214.1| DNA polymerase I [Streptococcus intermedius JTH08]
          Length = 881

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/295 (34%), Positives = 157/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I  +  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVEKILEYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  K +++AF+
Sbjct: 622  SVYPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDKHLIEAFR 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDQGYVETLFHRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +  R      ++LLQV
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALRAGRFKSRMLLQV 833


>gi|417858475|ref|ZP_12503532.1| DNA polymerase I [Agrobacterium tumefaciens F2]
 gi|338824479|gb|EGP58446.1| DNA polymerase I [Agrobacterium tumefaciens F2]
          Length = 998

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/251 (37%), Positives = 138/251 (54%), Gaps = 26/251 (10%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 720  RVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRV 779

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   + +AF+ G D H+ TA  M+                       VP+  +  
Sbjct: 780  LAHVADIPQLRNAFENGIDIHAMTASEMFG----------------------VPV--EGM 815

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    ++  EA + +  ++     +  + EA K  +
Sbjct: 816  PSEVRRRAKAINFGIIYGISAFGLANQLSIARSEAGEYIKKYFERFPGIRDYMEATKAFA 875

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+ I      
Sbjct: 876  RENGYVETIFGRRAHYPEIRSSNPSVKAFNERAAINAPIQGSAADIIRRAMVRIEPALEA 935

Query: 1061 KELGWKLLLQV 1071
            ++L  ++LLQV
Sbjct: 936  EKLSARMLLQV 946


>gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus]
          Length = 554

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 155/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 239  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 297

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 298  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 357

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +N+ + YG
Sbjct: 358  RDIHTETASWMFGVPREAVD----------------PLM-------RRTAKTINYGVLYG 394

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 395  MSAHHLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 454

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 455  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLLP--RLEEMGARMLLQV 505


>gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
 gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
          Length = 903

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/280 (35%), Positives = 147/280 (52%), Gaps = 29/280 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            L E  ++  L S +   LPLQ   V+   GRVH S +   T TGRLS+  PNLQN P   
Sbjct: 602  LLEYRTLSKLKSTYTDRLPLQ---VNSHTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRS 658

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
             +  +IRQAFIA PG  L+ ADY Q+ELRI+AHL+  + +L AF+A  D H RTA  ++ 
Sbjct: 659  TEGRRIRQAFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEEDIHQRTATEIF- 717

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
                               + P   L+D    +RR AK +NF + YG +  GL R   ++
Sbjct: 718  -------------------RTP---LEDVTPEQRRSAKAINFGLIYGMSAHGLGRQLGIN 755

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
               A+  ++ ++     V  + E   +++R   +V TL GR    P I S    +RN  E
Sbjct: 756  RTAAQHYIERYFQRYPGVKAYMENICQQARQKGYVETLFGRRLYLPEIHSRQTQRRNQAE 815

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R AIN P+QGSAAD+   AM+   +  + ++   ++++QV
Sbjct: 816  RTAINAPMQGSAADIIKRAMIHADRWLQEQKANARMIMQV 855



 Score = 46.2 bits (108), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 108/276 (39%), Gaps = 65/276 (23%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L    P  EDP   KV  N  FD +VL NYG+++ G   D+M  + + DS+        
Sbjct: 376 VLARLKPLLEDPRHGKVGQNLKFDCNVLANYGIELQGIRHDSMLESYVLDST-------- 427

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
                                 ++ N D      +++K    R  +  +  AGK +   P
Sbjct: 428 ---------------------ATRHNMD-----SLALK-YLQRTTITYEMVAGKGAKQLP 460

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
             ++  E+      Y+A D+  +L+L+     +L +            + +   YQE   
Sbjct: 461 FNQVTIEKAA---PYAAEDADISLQLHHCFWPRLQQ-----------EEGLRQLYQELEI 506

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
           P   +L +ME  G+ V+ E L    K    E  A + R  + A +   ++   N+ S  Q
Sbjct: 507 PLIPVLSRMERNGVQVNTEQL----KAQSDELAARLKRLEQEAFELAGES--FNLASPKQ 560

Query: 664 LRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAE 699
           ++ +L+        +   LP+ R  K P  +   AE
Sbjct: 561 IQAILY--------EKLKLPVTR--KTPTGQPSTAE 586


>gi|350560184|ref|ZP_08929024.1| DNA polymerase I [Thioalkalivibrio thiocyanoxidans ARh 4]
 gi|349782452|gb|EGZ36735.1| DNA polymerase I [Thioalkalivibrio thiocyanoxidans ARh 4]
          Length = 902

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/256 (37%), Positives = 139/256 (54%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  + GRVH S +     TGRLS+  PNLQN P    +  +IRQAFIA PG  L+ ADY 
Sbjct: 622  VHPETGRVHTSYHQAVAATGRLSSSDPNLQNIPVRTDEGRRIRQAFIAEPGQLLLAADYS 681

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  + +L+AF AG D H  TA  ++     AV          G D     
Sbjct: 682  QIELRIMAHLSQDRGLLEAFAAGEDIHRATAAEVFGLEPEAV----------GPD----- 726

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                    +RR AK +NF + YG +  GLAR+  +   +A++ +D ++     V  + E 
Sbjct: 727  --------QRRAAKAINFGLIYGMSAFGLARNLGIEQGQAREYIDRYFARYPGVKDYMER 778

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K+ +R   +V TL GR    P I+S   ++R   ER AIN P+QG+AAD+   AML+++
Sbjct: 779  AKELARDQGYVETLFGRRLYLPEIRSRNPARRAQSERVAINAPMQGTAADIIKRAMLKVA 838

Query: 1056 KNARLKELGWKLLLQV 1071
                  +L  ++++QV
Sbjct: 839  ARLEDGDLPARMIMQV 854


>gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735]
 gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735]
          Length = 920

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/265 (34%), Positives = 141/265 (53%), Gaps = 24/265 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + G +H S N   T TGRLS+  PNLQN P   +D  +IR+ F+         ADY 
Sbjct: 640  INKRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRSEDGKEIRKCFVPEQDCMFFSADYS 699

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  ++M++AF+ G D H+ TA  +                WH +      
Sbjct: 700  QIELRIMAHLSGDENMIEAFRQGFDIHAATAAKI----------------WHKD------ 737

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             + D  + ER+KAK  NF I YG T  GLA+  ++   EA++ ++ ++    +V  + E 
Sbjct: 738  -IADVTSEERKKAKQANFGIIYGITTYGLAQRMEIDNREARELIEGYFATFPKVRAYMEQ 796

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K+E+R   +  TL GR R  P I S   + R   ER AIN P+QGS AD+   AM+ I 
Sbjct: 797  AKEEARRKGYAETLFGRRRYLPDITSKNGTVRGFAERNAINAPIQGSEADIIKIAMIRIW 856

Query: 1056 KNARLKELGWKLLLQVLFFFSFSFF 1080
            +  + + +  K++LQV    +FS +
Sbjct: 857  QRFKAENIRSKMILQVHDELNFSVY 881



 Score = 46.2 bits (108), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           +N F P +EDPSI K+  N  +D  VL+NYG+ + G   DTM
Sbjct: 394 VNIFKPVYEDPSILKIGQNLKYDYEVLKNYGVTLGGKMFDTM 435


>gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium fabrum str. C58]
 gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium fabrum str. C58]
          Length = 998

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/259 (37%), Positives = 140/259 (54%), Gaps = 26/259 (10%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +  +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ AD
Sbjct: 712  SYIHPETKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSAD 771

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+   + +AF+ G D H+ TA  M+                       
Sbjct: 772  YSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMFG---------------------- 809

Query: 934  VPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
            VP+  +   SE RR+AK +NF I YG +  GLA    ++  EA   +  ++     +  +
Sbjct: 810  VPV--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIARSEAGDYIKKYFERFPGIRDY 867

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             EA K  +R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+
Sbjct: 868  MEATKAFARENGYVETIFGRRAHYPEIRSSNPSVKAFNERAAINAPIQGSAADIIRRAMI 927

Query: 1053 EISKNARLKELGWKLLLQV 1071
             I      ++L  ++LLQV
Sbjct: 928  RIEPALEAEKLSARMLLQV 946



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 182/469 (38%), Gaps = 143/469 (30%)

Query: 317 GQNKKASE--------NENSEKLEILRSKLASFYSNVMVVDNVSAAKKV----VWMLTNK 364
           G N+ AS          E S   ++  ++ A F +  +     +A + +    +W+   +
Sbjct: 335 GNNRPASAVAPAKRMIGEGSTPADLTTARQALFAATKIDTTAYTAIRDIATLDLWIAAAR 394

Query: 365 YKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL------- 417
              +V A DTE   +D  Q       E++ FS+     A   NGK     D+        
Sbjct: 395 EAGVV-AFDTETTSLDPMQ------AELVGFSL-----AIADNGKDASGTDIRAAYVPLT 442

Query: 418 --DGGGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYGLKV 458
              G G DL ++        APF           ED ++ KV  N  +D  +++ +G+ +
Sbjct: 443 HKTGSGGDLFSDGIKLAEGQAPFAEALERLKDLLEDEAVLKVAQNLKYDYLLMKRHGVVM 502

Query: 459 SGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK- 517
             F  DTM ++ + ++ + T G  +L                           E ++G  
Sbjct: 503 RSFD-DTMLISYVLEAGKTTHGMDTLS--------------------------ERWLGHT 535

Query: 518 -ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKK 576
            I+ KD+ G         +GK S       + +       +Y+A D+  TL+L+ +LK +
Sbjct: 536 PIAYKDVTG---------SGKSSITFDFVNIDKA-----TAYAAEDADVTLRLWMALKPR 581

Query: 577 LLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVA 631
           L+             + +   Y+   +P   +L  ME  G+ VDR+ LS +     +K A
Sbjct: 582 LV------------SERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAA 629

Query: 632 RAEQEA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLP 683
             E+E    A  RF              N+GS  QL  +LFG     G   +K    S  
Sbjct: 630 SFEEEIYELAGERF--------------NIGSPKQLGDILFGRMGLPGGSKTKTGQWSTS 675

Query: 684 IERIFKVPNTEGVIAEGKKTPSK---FRNIT-LRSIGVD-LPTEMYTAT 727
            + +      E + AEG + P K   +R +T L+S   D LP+ ++  T
Sbjct: 676 AQVL------EDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPET 718


>gi|421849808|ref|ZP_16282782.1| DNA polymerase I [Acetobacter pasteurianus NBRC 101655]
 gi|371459425|dbj|GAB27985.1| DNA polymerase I [Acetobacter pasteurianus NBRC 101655]
          Length = 933

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/256 (37%), Positives = 140/256 (54%), Gaps = 25/256 (9%)

Query: 818  SGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQ 876
            +G+N RVH S  +  T TGRLS+  PNLQN P   ++  +IRQAFIA PG  LI ADY Q
Sbjct: 653  AGRNDRVHTSFQMAITSTGRLSSTDPNLQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQ 712

Query: 877  LELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPL 936
            +ELR+LA +AN  ++ +AF+ G D H+RTA  ++           + LE  G D      
Sbjct: 713  IELRLLADVANIPALREAFQLGQDIHARTASEVF----------NIPLE--GMD------ 754

Query: 937  LKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEAR 996
                 A  RR+AK +NF I YG +  GL++   +   EA+  +D ++     +  + E  
Sbjct: 755  -----ALTRRRAKAINFGIIYGISAFGLSKQLGIPAGEARTYIDAYFARYPGIRDYMERM 809

Query: 997  KKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            ++E+R   +V T  GR    P I   + ++R + ER AIN P+QG AAD+   AM+ +  
Sbjct: 810  REEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAPLQGGAADIIKRAMVHLPL 869

Query: 1057 NARLKELG-WKLLLQV 1071
              +    G  ++LLQV
Sbjct: 870  ALQKAGFGETRMLLQV 885


>gi|335032839|ref|ZP_08526211.1| DNA polymerase I [Agrobacterium sp. ATCC 31749]
 gi|333795515|gb|EGL66840.1| DNA polymerase I [Agrobacterium sp. ATCC 31749]
          Length = 1001

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/259 (37%), Positives = 140/259 (54%), Gaps = 26/259 (10%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +  +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ AD
Sbjct: 715  SYIHPETKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSAD 774

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+   + +AF+ G D H+ TA  M+                       
Sbjct: 775  YSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMFG---------------------- 812

Query: 934  VPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
            VP+  +   SE RR+AK +NF I YG +  GLA    ++  EA   +  ++     +  +
Sbjct: 813  VPV--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIARSEAGDYIKKYFERFPGIRDY 870

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             EA K  +R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+
Sbjct: 871  MEATKAFARENGYVETIFGRRAHYPEIRSSNPSVKAFNERAAINAPIQGSAADIIRRAMI 930

Query: 1053 EISKNARLKELGWKLLLQV 1071
             I      ++L  ++LLQV
Sbjct: 931  RIEPALEAEKLSARMLLQV 949



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 164/416 (39%), Gaps = 131/416 (31%)

Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL 417
           +W+   +   +V A DTE   +D  Q       E++ FS+     A   NGK     D+ 
Sbjct: 391 LWIAAAREAGVV-AFDTETTSLDPMQ------AELVGFSL-----AIADNGKDASGTDIR 438

Query: 418 ---------DGGGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVL 451
                     G G DL ++        APF           ED ++ KV  N  +D  ++
Sbjct: 439 AAYVPLTHKTGSGGDLFSDGIKLAEGQAPFAEALERLKDLHEDEAVLKVAQNLKYDYLLM 498

Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
           + +G+ +  F  DTM ++ + ++ + T G  +L                           
Sbjct: 499 KRHGVVMRSFD-DTMLISYVLEAGKTTHGMDTLS-------------------------- 531

Query: 512 EGFMGK--ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKL 569
           E ++G   I+ KD+ G         +GK S      ++ +       +Y+A D+  TL+L
Sbjct: 532 ERWLGHTPIAYKDVAG---------SGKSSITFDFVDIDKA-----TAYAAEDADVTLRL 577

Query: 570 YKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-- 627
           + +LK +L+             + +   Y+   +P   +L  ME  G+ VDR+ LS +  
Sbjct: 578 WMALKPRLV------------SERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSG 625

Query: 628 ---EKVARAEQEA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG-----GKPNSK 676
              +K A  E+E    A  RF              N+GS  QL  +LFG     G   +K
Sbjct: 626 ELAQKAASFEEEIYELAGERF--------------NIGSPKQLGDILFGRMGLPGGSKTK 671

Query: 677 DDSESLPIERIFKVPNTEGVIAEGKKTPSK---FRNIT-LRSIGVD-LPTEMYTAT 727
               S   + +      E + AEG + P K   +R +T L+S   D LP+ ++  T
Sbjct: 672 TGQWSTSAQVL------EDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPET 721


>gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 876

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/282 (35%), Positives = 151/282 (53%), Gaps = 27/282 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            I  + E   +  L S +I  LQ   V   + R+H   N    +TGRLS+  PNLQN P  
Sbjct: 572  IDDILEYRQLSKLQSTYIEGLQ--KVIQNDHRIHTHFNQTLAQTGRLSSVDPNLQNIPVR 629

Query: 851  EKDRYKIRQAF-IAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF  A PGN ++ ADY Q+ELR+LAH+   +SM+ AF+ G D H+ TAM +
Sbjct: 630  LEEGRRIRKAFKPAEPGNVILSADYSQIELRVLAHITQDESMIKAFREGHDIHTATAMKV 689

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +      VE  +V                D+    RR+AK +NF I YG +  GL++   
Sbjct: 690  F-----GVEPDEV----------------DSLM--RRQAKAVNFGIVYGISDYGLSQSLG 726

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ + AK+ +D + +    V  +     K+++   +V TLL R R  P I S   ++R+ 
Sbjct: 727  ITRKAAKQFIDDYLDSFPGVKQYMSDIVKDAKAKGYVETLLHRRRYIPDITSRNFNRRSF 786

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             ER A+NTP+QGSAAD+   AM+   K  + K+    LLLQV
Sbjct: 787  AERTAMNTPIQGSAADIIKLAMVNFDKEIKNKDFHAHLLLQV 828


>gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4]
 gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4]
          Length = 930

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 140/265 (52%), Gaps = 29/265 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            + E  S+  L S +   LPL    V GK GRVH S +     TGRLS+  PNLQN P   
Sbjct: 628  ILEHRSLSKLKSTYTDKLPLM---VDGKTGRVHTSYHQAIAATGRLSSSEPNLQNIPIRT 684

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
            ++  +IR AF+A  G  ++ ADY Q+ELRI+AHL+  K +L AF  G D H  TA  ++ 
Sbjct: 685  EEGRRIRHAFVAPEGRKILAADYSQIELRIMAHLSQDKGLLSAFAEGKDIHRATAAEVFD 744

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
                 V+  +V  E                  +RR+AK +NF + YG +  GLAR   + 
Sbjct: 745  -----VDFSEVTSE------------------QRRRAKAVNFGLIYGMSAFGLARQLDIP 781

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
              EA++ +D+++     VL + E  +  +    +V TL GR    PAIK     +R   E
Sbjct: 782  RHEAQQYIDIYFKRYPGVLKYMEDTRAAAAEQGYVSTLYGRRLYLPAIKDRNAMRRQAAE 841

Query: 1032 RAAINTPVQGSAADVAMCAMLEISK 1056
            RAAIN P+QG+AAD+   AM+ I++
Sbjct: 842  RAAINAPMQGTAADIIKKAMINIAQ 866


>gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
            serovar 1 str. 4074]
 gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
            serovar 1 str. 4074]
          Length = 957

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 156/306 (50%), Gaps = 32/306 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   ++ A +       L E   +  L S +   LPL    ++ K GRVH 
Sbjct: 633  KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INQKTGRVHT 687

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 688  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHL 747

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN + M+ AF  G D H  TA  ++    + V + Q                       R
Sbjct: 748  ANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ-----------------------R 784

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S  +AKK ++L++     V  +    ++ +    +
Sbjct: 785  RSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMELYFQRYPAVQQFMTDIRESASKKGY 844

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TL GR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I K  R  E   
Sbjct: 845  VETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NI 903

Query: 1066 KLLLQV 1071
            K+++QV
Sbjct: 904  KMIMQV 909


>gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1]
 gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1]
          Length = 928

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/246 (39%), Positives = 134/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + +SG   RVH S +   T TGRLS+  PNLQN P    +  +IRQAF+A  G  
Sbjct: 643  LPLMINPLSG---RVHTSYHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFVAAKGYR 699

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                  
Sbjct: 700  IVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFG----------------- 742

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 VPL K + A +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 743  -----VPLDKVS-AEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 796

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++ +    +V T+ GR    P IKS    +R   ERAAIN P+QG+AAD+  
Sbjct: 797  VLRYMENTRQLAASKGYVETIEGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIK 856

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 857  RAMIAV 862


>gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661]
 gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661]
          Length = 928

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/246 (38%), Positives = 135/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + ++G   RVH S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G+ 
Sbjct: 643  LPLMINPITG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIASKGHK 699

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF  G D H  TA  ++         G  L +  G
Sbjct: 700  IVAADYSQIELRIMAHLSQDKGLLSAFAEGMDIHRATAAEVF---------GMALDKVTG 750

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 751  E--------------QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 796

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E+ ++++    +V TL GR    P I +    +R   ERAAIN P+QG+AAD+  
Sbjct: 797  VLEYMESTRQQAAEKGYVSTLDGRRLYLPDINASNAMRRKAAERAAINAPMQGTAADIIK 856

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 857  KAMIAV 862



 Score = 42.7 bits (99), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           +L    P  EDP++ KV  N  +D  VL+NY +++ G   DTM
Sbjct: 400 VLERLKPLLEDPALLKVGQNLKYDRGVLKNYDIELQGIKFDTM 442


>gi|445382615|ref|ZP_21427301.1| DNA polymerase I [Streptococcus thermophilus MTCC 5460]
 gi|445395408|ref|ZP_21429034.1| DNA polymerase I [Streptococcus thermophilus MTCC 5461]
 gi|444748485|gb|ELW73451.1| DNA polymerase I [Streptococcus thermophilus MTCC 5461]
 gi|444748653|gb|ELW73612.1| DNA polymerase I [Streptococcus thermophilus MTCC 5460]
          Length = 879

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 161/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  K ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDKHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 831


>gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|384043126|ref|YP_005481870.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
 gi|384051643|ref|YP_005478706.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
 gi|384054750|ref|YP_005487844.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
 gi|384057985|ref|YP_005490652.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
 gi|384060626|ref|YP_005499754.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
 gi|384063918|ref|YP_005484560.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
 gi|384119927|ref|YP_005502551.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
 gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
 gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
 gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
 gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
 gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
          Length = 933

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/256 (37%), Positives = 139/256 (54%), Gaps = 25/256 (9%)

Query: 818  SGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQ 876
            +G+N RVH S  +  T TGRLS+  PNLQN P   ++  +IRQAFIA PG  LI ADY Q
Sbjct: 653  AGRNDRVHTSFQMAITSTGRLSSTDPNLQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQ 712

Query: 877  LELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPL 936
            +ELR+LA +AN  ++ +AF+ G D H+RTA  ++           + LE  G D      
Sbjct: 713  IELRLLADVANIPALREAFQLGQDIHARTASEVF----------NIPLE--GMD------ 754

Query: 937  LKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEAR 996
                 A  RR+AK +NF I YG +  GL +   +   EA+  +D ++     +  + E  
Sbjct: 755  -----ALTRRRAKAINFGIIYGISAFGLGKQLGIPAGEARTYIDAYFARYPGIRDYMERM 809

Query: 997  KKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            ++E+R   +V T  GR    P I   + ++R + ER AIN P+QG AAD+   AM+ +  
Sbjct: 810  REEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAPLQGGAADIIKRAMVHLPL 869

Query: 1057 NARLKELG-WKLLLQV 1071
              +    G  ++LLQV
Sbjct: 870  ALQKAGFGETRMLLQV 885


>gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
 gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
          Length = 956

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 131/239 (54%), Gaps = 24/239 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++   GRVH S +   T TGRLS+  PNLQN P   ++  +IRQAF+A  G  +I ADY 
Sbjct: 677  INPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVARDGYRIIAADYS 736

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +  AF  G D H  TA  ++                       +P
Sbjct: 737  QIELRIMAHLSGDKGLTTAFVEGRDIHRSTASEIFG----------------------IP 774

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            L +D  A +RR AK +NF + YG +  GL+R   +S  EAKK +DL++     V T+   
Sbjct: 775  L-EDVSAEQRRSAKAINFGLIYGMSAFGLSRQLAISRMEAKKYMDLYFQRYPNVQTFMHD 833

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             +++++    V TL GR    P IKS   S+R   ER AIN P+QG+AAD+   AM++I
Sbjct: 834  IQEKAKAQGFVETLFGRRLYLPDIKSGNASRRKGAERVAINAPMQGTAADIIKRAMIDI 892


>gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
 gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
          Length = 932

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/246 (39%), Positives = 132/246 (53%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYR 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF AG D H  TA  ++      V T Q       
Sbjct: 704  IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGTPLEKVTTEQ------- 756

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 757  ----------------RRSAKAINFGLIYGMSAFGLARQLSIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 801  VLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 861  RAMIAV 866


>gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3]
 gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3]
          Length = 995

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 139/257 (54%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY 
Sbjct: 711  VHPQTKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYS 770

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF+ G D H+ TA  M+                       VP
Sbjct: 771  QIELRVLAHVADIPQLRSAFENGIDIHAMTASEMFG----------------------VP 808

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    ++  EA + +  ++     +  + E
Sbjct: 809  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIARSEAGEYIKKYFERFPGIRDYME 866

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+ I
Sbjct: 867  ATKAFARENGYVETIFGRRAHYPEIRSSNPSMKAFNERAAINAPIQGSAADIIRRAMVRI 926

Query: 1055 SKNARLKELGWKLLLQV 1071
                  ++L  ++LLQV
Sbjct: 927  EPVLEAEKLSARMLLQV 943



 Score = 48.9 bits (115), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 128/338 (37%), Gaps = 114/338 (33%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL---------DG 419
           V A DTE   +D  Q       E++ FS+     A   NGK     D+           G
Sbjct: 395 VVAFDTETTSLDPMQ------AELVGFSL-----AIADNGKDASGTDIRAAYVPLTHKTG 443

Query: 420 GGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
            G DL ++         PF           ED ++ K+  N  +D  +++ +G+ +  F 
Sbjct: 444 SGGDLFSDGIRLAEGQVPFAEALARLKDLLEDEAVLKIAQNLKYDYLLMKRHGVVMQSFD 503

Query: 463 ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISM 520
            DTM ++ + ++ + T G  +L                           E ++G   I+ 
Sbjct: 504 -DTMLISYVLEAGKTTHGMDTLS--------------------------ERWLGHTPIAY 536

Query: 521 KDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEM 580
           KD+ G         +GK S      ++ +       +Y+A D+  TL+L+  LK +L   
Sbjct: 537 KDVAG---------SGKSSITFDFVDIDKA-----TAYAAEDADVTLRLWMVLKPRL--- 579

Query: 581 SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQ 635
                      + +   Y+   +P   +L  ME  G+ VDR+ LS +     +K A  E+
Sbjct: 580 ---------AAERLTSVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAAAFEE 630

Query: 636 EA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
           E    A  RF              N+GS  QL  +LFG
Sbjct: 631 EVYQLAGERF--------------NIGSPKQLGDILFG 654


>gi|418407646|ref|ZP_12980963.1| DNA polymerase I [Agrobacterium tumefaciens 5A]
 gi|358005632|gb|EHJ97957.1| DNA polymerase I [Agrobacterium tumefaciens 5A]
          Length = 995

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 139/257 (54%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY 
Sbjct: 711  VHPQTKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYS 770

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF+ G D H+ TA  M+                       VP
Sbjct: 771  QIELRVLAHVADIPQLRSAFENGIDIHAMTASEMFG----------------------VP 808

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    ++  EA + +  ++     +  + E
Sbjct: 809  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIARSEAGEYIKKYFERFPGIRDYME 866

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+ I
Sbjct: 867  ATKAFARENGYVETIFGRRAHYPEIRSSNPSMKAFNERAAINAPIQGSAADIIRRAMVRI 926

Query: 1055 SKNARLKELGWKLLLQV 1071
                  ++L  ++LLQV
Sbjct: 927  EPVLEAEKLSARMLLQV 943



 Score = 48.9 bits (115), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 128/338 (37%), Gaps = 114/338 (33%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL---------DG 419
           V A DTE   +D  Q       E++ FS+     A   NGK     D+           G
Sbjct: 395 VVAFDTETTSLDPMQ------AELVGFSL-----AIADNGKDASGTDIRAAYVPLTHKTG 443

Query: 420 GGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
            G DL ++         PF           ED ++ K+  N  +D  +++ +G+ +  F 
Sbjct: 444 SGGDLFSDGIRLAEGQVPFAEALARLKDLLEDEAVLKIAQNLKYDYLLMKRHGVVMQSFD 503

Query: 463 ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISM 520
            DTM ++ + ++ + T G  +L                           E ++G   I+ 
Sbjct: 504 -DTMLISYVLEAGKTTHGMDTLS--------------------------ERWLGHTPIAY 536

Query: 521 KDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEM 580
           KD+ G         +GK S      ++ +       +Y+A D+  TL+L+  LK +L   
Sbjct: 537 KDVAG---------SGKSSITFDFVDIDKA-----TAYAAEDADVTLRLWMVLKPRL--- 579

Query: 581 SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQ 635
                      + +   Y+   +P   +L  ME  G+ VDR+ LS +     +K A  E+
Sbjct: 580 ---------AAERLTSVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAAAFEE 630

Query: 636 EA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
           E    A  RF              N+GS  QL  +LFG
Sbjct: 631 EVYQLAGERF--------------NIGSPKQLGDILFG 654


>gi|392534064|ref|ZP_10281201.1| DNA polymerase I [Pseudoalteromonas arctica A 37-1-2]
          Length = 911

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/264 (37%), Positives = 142/264 (53%), Gaps = 28/264 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  
Sbjct: 626  LPLM---VNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L+AF  G D HS TA  ++      VE          
Sbjct: 683  IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF-----GVE---------- 727

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                    L D     RRKAK +NF + YG +  GLAR   V   EA+  +D ++     
Sbjct: 728  --------LDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPG 779

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+  
Sbjct: 780  VLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIK 839

Query: 1049 CAMLEISKNARLKELG-WKLLLQV 1071
             AML +++    +     KLL+QV
Sbjct: 840  KAMLSVNRWVHEQAPNTIKLLMQV 863


>gi|359431675|ref|ZP_09222097.1| DNA polymerase I [Pseudoalteromonas sp. BSi20652]
 gi|357921674|dbj|GAA58346.1| DNA polymerase I [Pseudoalteromonas sp. BSi20652]
          Length = 911

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/264 (37%), Positives = 142/264 (53%), Gaps = 28/264 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  
Sbjct: 626  LPLM---VNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L+AF  G D HS TA  ++      VE          
Sbjct: 683  IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF-----GVE---------- 727

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                    L D     RRKAK +NF + YG +  GLAR   V   EA+  +D ++     
Sbjct: 728  --------LDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPG 779

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+  
Sbjct: 780  VLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIK 839

Query: 1049 CAMLEISKNARLKELG-WKLLLQV 1071
             AML +++    +     KLL+QV
Sbjct: 840  KAMLSVNRWVHEQAPNTIKLLMQV 863


>gi|359441073|ref|ZP_09230978.1| DNA polymerase I [Pseudoalteromonas sp. BSi20429]
 gi|358037086|dbj|GAA67227.1| DNA polymerase I [Pseudoalteromonas sp. BSi20429]
          Length = 911

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/264 (37%), Positives = 142/264 (53%), Gaps = 28/264 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  
Sbjct: 626  LPLM---VNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L+AF  G D HS TA  ++      VE          
Sbjct: 683  IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF-----GVE---------- 727

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                    L D     RRKAK +NF + YG +  GLAR   V   EA+  +D ++     
Sbjct: 728  --------LDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPG 779

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+  
Sbjct: 780  VLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIK 839

Query: 1049 CAMLEISKNARLKELG-WKLLLQV 1071
             AML +++    +     KLL+QV
Sbjct: 840  KAMLSVNRWVHEQAPNTIKLLMQV 863


>gi|414071039|ref|ZP_11407015.1| DNA polymerase I [Pseudoalteromonas sp. Bsw20308]
 gi|410806545|gb|EKS12535.1| DNA polymerase I [Pseudoalteromonas sp. Bsw20308]
          Length = 911

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/264 (37%), Positives = 142/264 (53%), Gaps = 28/264 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  
Sbjct: 626  LPLM---VNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L+AF  G D HS TA  ++      VE          
Sbjct: 683  IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF-----GVE---------- 727

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                    L D     RRKAK +NF + YG +  GLAR   V   EA+  +D ++     
Sbjct: 728  --------LDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPG 779

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+  
Sbjct: 780  VLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIK 839

Query: 1049 CAMLEISKNARLKELG-WKLLLQV 1071
             AML +++    +     KLL+QV
Sbjct: 840  KAMLSVNRWVHEQAPNTIKLLMQV 863


>gi|421852648|ref|ZP_16285334.1| DNA polymerase I [Acetobacter pasteurianus subsp. pasteurianus LMG
            1262 = NBRC 106471]
 gi|371479152|dbj|GAB30537.1| DNA polymerase I [Acetobacter pasteurianus subsp. pasteurianus LMG
            1262 = NBRC 106471]
          Length = 933

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/256 (37%), Positives = 139/256 (54%), Gaps = 25/256 (9%)

Query: 818  SGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQ 876
            +G+N RVH S  +  T TGRLS+  PNLQN P   ++  +IRQAFIA PG  LI ADY Q
Sbjct: 653  AGRNDRVHTSFQMAITSTGRLSSTDPNLQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQ 712

Query: 877  LELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPL 936
            +ELR+LA +AN  ++ +AF+ G D H+RTA  ++           + LE  G D      
Sbjct: 713  IELRLLADVANIPALREAFQLGQDIHARTASEVF----------NIPLE--GMD------ 754

Query: 937  LKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEAR 996
                 A  RR+AK +NF I YG +  GL +   +   EA+  +D ++     +  + E  
Sbjct: 755  -----ALTRRRAKAINFGIIYGISAFGLGKQLGIPAGEARTYIDAYFARYPGIRDYMERM 809

Query: 997  KKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            ++E+R   +V T  GR    P I   + ++R + ER AIN P+QG AAD+   AM+ +  
Sbjct: 810  REEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAPLQGGAADIIKRAMVHLPL 869

Query: 1057 NARLKELG-WKLLLQV 1071
              +    G  ++LLQV
Sbjct: 870  ALQKAGFGETRMLLQV 885


>gi|445116818|ref|ZP_21378649.1| DNA polymerase I [Prevotella nigrescens F0103]
 gi|444839987|gb|ELX67031.1| DNA polymerase I [Prevotella nigrescens F0103]
          Length = 942

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/290 (34%), Positives = 149/290 (51%), Gaps = 25/290 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            +  + E   I  L+S +I  L    +  + G +H S N   T TGRLS+  PNLQN P  
Sbjct: 638  VHKILEYRGIKKLLSTYIDALPKL-IKPETGHIHTSFNQALTATGRLSSSDPNLQNIPVR 696

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
              D  +IR+ FI  PG     ADY Q+ELRI+AHL+  ++M++AF+ G D H  TA  + 
Sbjct: 697  TDDGKEIRKCFIPEPGCEFFSADYSQIELRIMAHLSEDENMMEAFRKGFDIHRATAAKI- 755

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                           WH ED      +++   ++R+KAK  NF I YG T  GLA+   +
Sbjct: 756  ---------------WH-ED------MENVTDTQRKKAKQANFGIIYGITTYGLAQRMDI 793

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
               EA++ +D ++    +V  + E  K+E+R   +  T+  R R    I S   + R   
Sbjct: 794  PNSEARELIDDYFKTFPKVKAYMERAKEEARQKGYAETIFHRRRYLADINSRNATVRGFA 853

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSFF 1080
            ER AIN P+QGS AD+   AM+ I +  + + +  K++LQV    +FS F
Sbjct: 854  ERNAINAPIQGSEADIIKVAMVRIWQRFKRENIRSKMILQVHDELNFSVF 903



 Score = 43.9 bits (102), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 87/250 (34%), Gaps = 61/250 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++N F P +ED SI K+  N  +D  VL  YG+ + G   DTM    L     R    Y 
Sbjct: 414 IVNIFKPLYEDESILKIGQNIKYDYEVLHKYGVTLKGKLFDTMIAHYLIQPELRHNMDYM 473

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
            E L   + +  E         +KG   +  M  +   +I+                   
Sbjct: 474 AETLLNYKTIPIESLIG-----AKGKQQQKNMRDLQPSEIY------------------- 509

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW- 602
                         Y+  D+  TL+L   L+ KL         K V  +++F      W 
Sbjct: 510 -------------EYACEDADITLQLKHVLEPKL---------KEVEAENLF------WN 541

Query: 603 --QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
              P   +L  ME  G+ +D   L E  ++             + A +        N+ S
Sbjct: 542 IEMPLVPVLADMELHGVRLDTAALEETSRIFTQRMNQYEQEIYELAGES------FNISS 595

Query: 661 DTQLRQLLFG 670
             Q+ ++LFG
Sbjct: 596 PKQVGEMLFG 605


>gi|332533751|ref|ZP_08409609.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
          Length = 911

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/264 (37%), Positives = 142/264 (53%), Gaps = 28/264 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  
Sbjct: 626  LPLM---VNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L+AF  G D HS TA  ++      VE          
Sbjct: 683  IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF-----GVE---------- 727

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                    L D     RRKAK +NF + YG +  GLAR   V   EA+  +D ++     
Sbjct: 728  --------LDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPG 779

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+  
Sbjct: 780  VLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIK 839

Query: 1049 CAMLEISKNARLKELG-WKLLLQV 1071
             AML +++    +     KLL+QV
Sbjct: 840  KAMLSVNRWVHEQAPNTIKLLMQV 863


>gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
 gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
          Length = 894

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 137/253 (54%), Gaps = 24/253 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            + GRVH S N   T TGRLS+  PNLQN P   ++  +IR AFIA  G  L+ ADY Q++
Sbjct: 617  RTGRVHTSFNQCGTATGRLSSSSPNLQNIPIRTEEGRRIRSAFIAADGCLLLAADYSQID 676

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH +  + ++ AF+ G D H RTA  ++ ++   + T ++                
Sbjct: 677  LRVLAHYSQDRELIAAFQGGQDIHRRTAAEIF-NVSPELVTAEM---------------- 719

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GL+    VS ++A+  +D ++     +  +  +  +
Sbjct: 720  ------RRVAKTINFGIVYGMSSFGLSSQLHVSRKDAQLFIDRYFAHFSGIKDFMASTIQ 773

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            +++ D  V TLLGR R    I S  R QR   ER AINTP+QG+AAD+   AML I +  
Sbjct: 774  QAKKDGFVTTLLGRRRPLAEINSANRVQREFAERTAINTPIQGTAADIIKLAMLRIHREL 833

Query: 1059 RLKELGWKLLLQV 1071
              ++   ++LLQ+
Sbjct: 834  LRRDFRARMLLQI 846


>gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
 gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
          Length = 877

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 147/257 (57%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            V+ + G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ + PG ++  ADY
Sbjct: 596  VNYETGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEPGWAIFAADY 655

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+AN + +++AF    D H++TAM ++ H+ NA E                
Sbjct: 656  SQIELRVLAHIANDEKLIEAFIEDMDIHTKTAMEVF-HV-NANEVT-------------- 699

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                   ++ RR AK +NF I YG +  GL++   ++ +EA K +D +      V  + +
Sbjct: 700  -------SNMRRHAKAVNFGIVYGISDYGLSQSLGITRKEAGKFIDRYLESYPGVKQYMD 752

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
                +++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 753  DIIHDAKQKGYVSTLLHRRRYLPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDM 812

Query: 1055 SKNARLKELGWKLLLQV 1071
            +   R +EL  +LLLQV
Sbjct: 813  ADRLRKEELKARLLLQV 829


>gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
 gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
          Length = 850

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/261 (37%), Positives = 144/261 (55%), Gaps = 26/261 (9%)

Query: 812  LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            LQ  N S   GRVH + +   T TGRL++  PNLQN P    +   IR+ FI   G+ LI
Sbjct: 567  LQAINPSS--GRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGRLIRKVFIPEEGHVLI 624

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
             ADY Q+ELRILAH++  + +++AFK   D HS+TA  ++                 G D
Sbjct: 625  DADYSQIELRILAHISEDERLINAFKNNVDIHSQTAAEVF-----------------GVD 667

Query: 931  KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
                  + D     R +AK +NF I YG +  GLARD K+S +EA + ++ ++    +V 
Sbjct: 668  ------IDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKVK 721

Query: 991  TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
             + +   K +R + +V TL  R R    IKS  R+ RN+ ER A+N+P+QGSAAD+   A
Sbjct: 722  EYLDNIVKFARDNGYVLTLFNRRRYVKDIKSANRNARNYAERIAMNSPIQGSAADIMKLA 781

Query: 1051 MLEISKNARLKELGWKLLLQV 1071
            M+++ +  +   L  K++LQV
Sbjct: 782  MIKVYQKLKENNLKSKIILQV 802


>gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
 gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
          Length = 903

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/250 (36%), Positives = 139/250 (55%), Gaps = 24/250 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            R+H S N   T TGRLS+  PNLQN P   +   +IR+AFIA PG  L+  DY Q++LR+
Sbjct: 629  RLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPPGTVLLAGDYSQIDLRV 688

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAHL+   ++++AF++  D H+ TA  +                    +  P  + K+  
Sbjct: 689  LAHLSQDPALIEAFQSDQDIHTATAARLL-------------------NVSPSKVTKE-- 727

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
              +RR AK +NF + YG +  GL +  ++S+EEA K +  ++ +   V  +    K+++R
Sbjct: 728  --QRRLAKTVNFGVIYGMSSYGLEQATELSLEEADKFIKAYFEKYPRVAVYFAEIKQQAR 785

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V TLLGR R  P I S  R  R   ER AIN PVQG++AD+   AM+ + +  + +
Sbjct: 786  TQGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKLAMVRLDEKIKEE 845

Query: 1062 ELGWKLLLQV 1071
            +L  +LLLQV
Sbjct: 846  KLKSRLLLQV 855


>gi|359455121|ref|ZP_09244368.1| DNA polymerase I [Pseudoalteromonas sp. BSi20495]
 gi|358047836|dbj|GAA80617.1| DNA polymerase I [Pseudoalteromonas sp. BSi20495]
          Length = 911

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/264 (37%), Positives = 142/264 (53%), Gaps = 28/264 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  
Sbjct: 626  LPLM---VNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L+AF  G D HS TA  ++      VE          
Sbjct: 683  IVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF-----GVE---------- 727

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                    L D     RRKAK +NF + YG +  GLAR   V   EA+  +D ++     
Sbjct: 728  --------LDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPG 779

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+  
Sbjct: 780  VLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIK 839

Query: 1049 CAMLEISKNARLKELG-WKLLLQV 1071
             AML +++    +     KLL+QV
Sbjct: 840  KAMLSVNRWVHEQAPNTIKLLMQV 863


>gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
 gi|345517007|ref|ZP_08796487.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
          Length = 971

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 155/309 (50%), Gaps = 33/309 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ + G++H S N   
Sbjct: 650  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INKETGKIHTSFNQTV 706

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+   +M
Sbjct: 707  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANM 766

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AFK G D H+ TA  +Y      +   +V  E                  +R KAK  
Sbjct: 767  IEAFKEGDDIHAATAAKVY-----KISIDKVTRE------------------QRSKAKTA 803

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++    ++  + +     +R   ++ T+ G
Sbjct: 804  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFG 863

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QG AAD+   AM+ I +  + + +  K++LQV
Sbjct: 864  RKRYLPDINSRNSVVRGYAERNAINAPIQGGAADIIKVAMVRIYQRFQSESIKSKMILQV 923

Query: 1072 LFFFSFSFF 1080
                +FS  
Sbjct: 924  HDELNFSVL 932



 Score = 43.5 bits (101), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 18/132 (13%)

Query: 342 YSNVMVVDN-------VSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVIC 394
           YSN+  +DN       V   +K   +L N     + + DTE    D     P+   E++ 
Sbjct: 366 YSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDTETTGTD-----PIT-AELVG 419

Query: 395 FSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENY 454
            S        F      + V       + ++NEF P FE   + KV  N  +D  VL NY
Sbjct: 420 MSFSYAENQAF-----YVPVPADRAEAQKIVNEFRPAFEKEGVLKVGQNIKYDMLVLGNY 474

Query: 455 GLKVSGFHADTM 466
           G +V G   DTM
Sbjct: 475 GTEVRGPLFDTM 486


>gi|384431242|ref|YP_005640602.1| DNA polymerase I [Thermus thermophilus SG0.5JP17-16]
 gi|333966710|gb|AEG33475.1| DNA polymerase I [Thermus thermophilus SG0.5JP17-16]
          Length = 831

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 155/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL G  V  + GR+H   N   T TGRLS
Sbjct: 516  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLPGL-VHPRTGRLHTRFNQTATATGRLS 574

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 575  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 634

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 635  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 671

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 672  MSAHRLSQELAIPYEEASAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 731

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 732  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLREMGARMLLQV 782


>gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
 gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
          Length = 979

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GR+H C    +T TGRL++  PNLQN P   +D  KIR AF+A  GN LI ADY 
Sbjct: 695  INPETGRIHTCYSLASTSTGRLASTEPNLQNIPVRTEDGRKIRTAFVAEKGNLLISADYS 754

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+ +++  AF  G D H+ TA  M+      +E+                
Sbjct: 755  QIELRLLAHIADIEALKKAFAEGLDIHAMTASEMFGVPIEGMES---------------- 798

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                   S RR+AK +NF I YG +  GLA    +  +EA + +D ++     +  + + 
Sbjct: 799  -------SVRRRAKAINFGIIYGISAFGLANQLGIPRQEAGEYIDRYFKRFPGIRAYMDD 851

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  +  + +V T+ GR    PAI S   ++++ +ERAAIN P+QGSAAD+   AM+ + 
Sbjct: 852  TRDFAHKNGYVETIFGRRIHLPAINSKNPAEKSFMERAAINAPIQGSAADIIRRAMIRMP 911

Query: 1056 KNARLKELGWKLLLQV 1071
            +     +L  ++LLQV
Sbjct: 912  QALADAKLAARMLLQV 927



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 103/270 (38%), Gaps = 79/270 (29%)

Query: 414 VDLLDGGG------RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
           +D  D GG      ++ +    P  EDPSI K+  N  FD  VL  +G+++ G   DTM 
Sbjct: 433 LDFADAGGQPQIPLKEAIARLKPLLEDPSILKIGQNLKFDMTVLRQHGIQLKGLD-DTML 491

Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527
           M+   D+     G   L  L    K                         IS  ++ G+ 
Sbjct: 492 MSYALDAGVHGHGMDELSELHLGHK------------------------PISFAEVAGK- 526

Query: 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGK 587
                G A       PV+           +Y+A D+  TL+L+  LK +L+         
Sbjct: 527 -----GKAQITFDQVPVDR--------ATAYAAEDADVTLRLWHILKPRLV--------- 564

Query: 588 PVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEA---AV 639
               +     Y+   +P   +L +ME  G+ VD+  L+ +     +K+A+ E E    A 
Sbjct: 565 ---AERRVTVYETLERPLVSVLAEMERAGVKVDKAVLARLSGDFSQKMAQYEDEIYELAG 621

Query: 640 NRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
            RF              N+GS  QL ++LF
Sbjct: 622 ERF--------------NIGSPKQLGEILF 637


>gi|410634866|ref|ZP_11345493.1| DNA polymerase I [Glaciecola lipolytica E3]
 gi|410145610|dbj|GAC12698.1| DNA polymerase I [Glaciecola lipolytica E3]
          Length = 926

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 133/239 (55%), Gaps = 24/239 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S +     TGRLS+  PNLQN P   ++  K+R+AF+A  G  ++ ADY 
Sbjct: 645  INPRTGRVHTSYHQAIAATGRLSSTDPNLQNIPIRNEEGRKVRKAFVARKGYKIVAADYS 704

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +LDAF +G D H  TA  ++           V LE          
Sbjct: 705  QIELRIMAHLSEDKGLLDAFSSGKDVHKATAAEVF----------GVALE---------- 744

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
               D  A +RR AK +NF + YG +  GLAR   +  ++A+K ++L++     VL + E 
Sbjct: 745  ---DVSAEQRRSAKAINFGLIYGMSAFGLARQLNIPRQDAQKYMNLYFERYPGVLKYMEQ 801

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             +  ++ D +V T+ GR    P I +    +R   ERAAIN P+QG+AAD+   AML++
Sbjct: 802  TRVAAKEDGYVSTVFGRRLYLPDINASNGMRRQGAERAAINAPMQGTAADIIKKAMLKV 860



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 101/246 (41%), Gaps = 55/246 (22%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +LN+F    E  S KKV  +  +D +VL NYG+ + G   DTM                 
Sbjct: 398 VLNKFKTLLESESHKKVGQHLKYDKNVLANYGITLRGIAFDTM----------------- 440

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           LE+   +  V   D  +  K   + NT       IS ++I G+      G+        P
Sbjct: 441 LESYVLNSVVTRHDMDSLSKYYLEHNT-------ISFEEIAGK------GAKQLTFNQIP 487

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
           +E+           Y+A D+  TL+L++ L  +L E            +S+ D  QE   
Sbjct: 488 LEKAS--------PYAAEDADITLRLHQKLWPQLCE-----------HESLKDVLQEIEV 528

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
           P   +L KME  G+L+D + L       +  Q+ A    +     H    +  N+GS  Q
Sbjct: 529 PLASVLSKMEQRGVLIDSQTL------LQQSQDLASRIMQLEKEVHDLAGEEFNLGSTKQ 582

Query: 664 LRQLLF 669
           L+++LF
Sbjct: 583 LQEILF 588


>gi|390957365|ref|YP_006421122.1| DNA polymerase I [Terriglobus roseus DSM 18391]
 gi|390412283|gb|AFL87787.1| DNA polymerase I [Terriglobus roseus DSM 18391]
          Length = 953

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 155/300 (51%), Gaps = 30/300 (10%)

Query: 777  KIFATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-IN 831
            K+ +T Q+  E      +A   + E   +  L SN+    Q   ++   GRVH + N + 
Sbjct: 631  KVVSTAQDVLEELAEHHEAPRLVLEYRQLAKLRSNYTE--QLPQLADAEGRVHTTFNQVG 688

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+ +PNLQN P   +    IR AFIA PGN ++ ADY Q+ELR++AH +    +
Sbjct: 689  TATGRLSSTQPNLQNIPVRTELGRGIRAAFIAAPGNVILSADYSQIELRLMAHFSQDPLL 748

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            L A++   D H+ TA  ++                 G D  PV + K+     R +AK +
Sbjct: 749  LHAYRNDIDIHTLTASEVF-----------------GVD--PVTMSKET----RARAKAV 785

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +P GLA    +  +EA+  ++ +++  + V  +        R    V TL G
Sbjct: 786  NFGIVYGISPFGLAAQLGIDQKEARTYIETYFDRYKGVQNFINETLATVRETGKVTTLFG 845

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R+R  P I+S   + R   ER A+NTP+QG+AAD+   AML I +  R ++L  ++ LQV
Sbjct: 846  RSRPIPDIQSRNPNMRGFAERTAVNTPLQGTAADMIKVAMLRIDQALRDQKLATRMTLQV 905


>gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3]
          Length = 916

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/248 (37%), Positives = 132/248 (53%), Gaps = 27/248 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K+GRVH S +  N  TGRLS+  PNLQN P   ++  +IR AFIA  G  
Sbjct: 631  LPLM---VNAKSGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGRK 687

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF  G D H  TA  ++    + V + Q       
Sbjct: 688  ILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFSEVTSDQ------- 740

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR+AK +NF + YG +  GLA+   +   EA++ +D ++     
Sbjct: 741  ----------------RRRAKAVNFGLIYGMSAFGLAKQLDIPRAEAQRYIDTYFKRYPG 784

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +  +    +V TL GR    PAIK     +R   ERAAIN P+QG+AAD+  
Sbjct: 785  VLNYMEETRAIATDLGYVSTLFGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIK 844

Query: 1049 CAMLEISK 1056
             AM+ ++K
Sbjct: 845  KAMINVAK 852



 Score = 47.8 bits (112), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 151/364 (41%), Gaps = 81/364 (22%)

Query: 313 AEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHAC 372
           AE       A+ +E++++  +++  + + Y  ++ V+ + +     W+ T     L+ A 
Sbjct: 289 AEVLDNKSTATADEDNDE-AVVKQDIEAKYDTILSVEQLDS-----WIATLSKADLI-AI 341

Query: 373 DTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNE-FAPF 431
           DTE   ++  +   V     I F++ +G  A      S  +VD  +   + L+ E   P 
Sbjct: 342 DTETTSLNYMEAELVG----ISFAVEAGKAAYLP--LSHDYVDAPEQLDKALVFEKLTPL 395

Query: 432 FEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDR 491
            E+ +IKKV  N  +D  +  N G+K+ G   DTM  + +++S                 
Sbjct: 396 LENEAIKKVGQNLKYDISIFANAGIKLKGVQFDTMLESYVFNSVA--------------- 440

Query: 492 KVMSEDKKAYQKDMSKGNTDE---GFMG--KISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
                         SK N D+    ++G   IS ++I G+   +   +   + T AP   
Sbjct: 441 --------------SKHNMDDLALKYLGHKNISFEEIAGKGAKQLTFNQIPLETAAP--- 483

Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606
                      Y+A D+  TL+L++ L  +L ++             +   + +   P  
Sbjct: 484 -----------YAAEDADITLRLHQHLWPRLEKLP-----------QLASVFTDIELPLI 521

Query: 607 EILVKMETEGMLVDREYLS-EIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLR 665
           +IL  +E +G+L+D   L  + E++AR      ++  +  A  H    +  N+ S  QL+
Sbjct: 522 DILSTIERQGVLIDSMLLGQQSEELAR-----KIDDLQTKA--HEIAGQPFNLASPKQLQ 574

Query: 666 QLLF 669
           +L F
Sbjct: 575 ELFF 578


>gi|261415194|ref|YP_003248877.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|385790136|ref|YP_005821259.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp.
            succinogenes S85]
 gi|261371650|gb|ACX74395.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327893|gb|ADL27094.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp.
            succinogenes S85]
          Length = 972

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 154/300 (51%), Gaps = 26/300 (8%)

Query: 774  SNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINT 832
            S +     E   R A   + A+ E   +  + S ++  L  + V+    R+H S +   T
Sbjct: 649  STDAAVLEELSFRSAHPIVFAVIEYRELKKMQSTYVSVLP-TLVNPDTKRIHTSFIQWGT 707

Query: 833  ETGRLSARRPNLQNQPALEKDRYKIRQAFIAV-PGNSLIVADYGQLELRILAHLANCKSM 891
             TGRLS+R PNLQN P       +IR AF+   P N ++  DY Q+ELR+LAHL+  +++
Sbjct: 708  ATGRLSSRDPNLQNIPVRSDLGKQIRAAFVPQNPNNVILAVDYSQIELRMLAHLSGDEAL 767

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++++K G D H+RTA  +     N V                   L+D  A  RR AK++
Sbjct: 768  IESYKEGIDIHARTAAAI-----NRVS------------------LEDVTADMRRDAKVV 804

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF + YG T   L+RD K+ + +AK  +D ++   Q V  + +  K  +  D +V TL G
Sbjct: 805  NFGVLYGMTAFRLSRDLKIPMAQAKSFIDGYFEMYQGVQKFIDDTKAAAHRDGYVETLSG 864

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R    I S  R +    ER A+NTPVQGSAAD+   AM+ I K    + L  +++LQV
Sbjct: 865  RRRYIAGIDSSDRMESQMAERMAVNTPVQGSAADLIKIAMIRIQKRINDENLPLRMMLQV 924


>gi|403529939|ref|YP_006664468.1| DNA polymerase I [Bartonella quintana RM-11]
 gi|403232011|gb|AFR25754.1| DNA polymerase I [Bartonella quintana RM-11]
          Length = 968

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/258 (37%), Positives = 139/258 (53%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +  K GR+H + ++  T TGRLS+  PNLQN P    +  KIR AFIA  G+ L+ AD
Sbjct: 682  SYILSKTGRIHTNYSLAITSTGRLSSSEPNLQNIPVRTTEGRKIRTAFIAPKGHMLLSAD 741

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+           V +E    D   
Sbjct: 742  YSQIELRILAHIADITALKEAFAQGQDIHAITASQMF----------GVAIEGMNSDI-- 789

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+AK +NF I YG +  GLA    +S +EA   + L++     +  + 
Sbjct: 790  -----------RRRAKAINFGIIYGISAFGLANQLGLSRQEASHYIQLYFERFPGIKDYM 838

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K  +  + +V T+ GR   +P IK+     R+  ERAAIN P+QGSAAD+   AM++
Sbjct: 839  EMTKNFACRNGYVETIFGRRIHYPEIKAANPQVRSFNERAAINAPIQGSAADIIRRAMIQ 898

Query: 1054 ISKNARLKELGWKLLLQV 1071
            +      ++L  K+LLQV
Sbjct: 899  MEDALEKEKLSAKMLLQV 916



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 128/317 (40%), Gaps = 73/317 (23%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           R  L    P  ED ++ K+  N  +D  V++ YG+ +  F  DTM ++   D        
Sbjct: 436 RKALTLLKPILEDQAVLKIGQNIKYDWLVMKQYGVVIRCFD-DTMLLSYALD-------- 486

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
             + ALT +   +SE    ++               I+ KD+    K        KI++ 
Sbjct: 487 --VGALTHNMDALSERWLGHKP--------------IAYKDLTHNGK--------KITSF 522

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
           A V+  Q         Y+A D+  TL+L++ LK +L+             + M   Y+  
Sbjct: 523 AQVDLKQAT------LYAAEDADITLRLWQVLKPQLV------------ARGMTKVYERL 564

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            +P  E+L +ME  G+LVD++ L       R   E A   F      +    +  N+ S 
Sbjct: 565 DRPLVEVLARMEERGILVDKQIL------LRLSGELAQAVFILEEEIYQLAGEKFNLASP 618

Query: 662 TQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK---FRNIT-L 712
            QL  +LFG     G   +K    S   + +      E + AEG   P K   +R +  L
Sbjct: 619 KQLGDILFGKMSLPGGTKTKSGQWSTSAQTL------EELAAEGHILPRKIIDWRQLAKL 672

Query: 713 RSIGVD-LPTEMYTATG 728
           +S   D LP+ + + TG
Sbjct: 673 KSTYADALPSYILSKTG 689


>gi|395791668|ref|ZP_10471124.1| DNA polymerase I [Bartonella alsatica IBS 382]
 gi|395407971|gb|EJF74591.1| DNA polymerase I [Bartonella alsatica IBS 382]
          Length = 968

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 144/268 (53%), Gaps = 32/268 (11%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP        K GRVH + ++  T TGRLS+  PNLQN P    +  KIR+AFIA
Sbjct: 680  LPSYILP--------KTGRVHTNYSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRKAFIA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+         G + 
Sbjct: 732  SEGHMLLSADYSQIELRILAHIADIAALKEAFAQGQDIHAITASQMF--------GGSI- 782

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                          K+  +  RR+AK +NF I YG +  GLA    +S +EA + + L++
Sbjct: 783  --------------KEMPSDIRRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQLYF 828

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 +  + E  K  +R   +V T+ GR   +P IK+     R   ERAAIN  +QGSA
Sbjct: 829  ERFPGIRDYMETTKIFARQHGYVQTIFGRRIHYPEIKASNPQIRAFNERAAINASIQGSA 888

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AD+   AM+++      ++L  K+LLQV
Sbjct: 889  ADIIRRAMIQMENALEKEKLSAKMLLQV 916



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 127/311 (40%), Gaps = 76/311 (24%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGP-EADFGNGKSCIWVDLLDGGGR------- 422
           A DTE   +D  Q       +++ FS+   P +A +   +    VD L GGGR       
Sbjct: 382 AFDTETTSLDPMQ------AKLVGFSLALQPGKAAYIPLEHVEGVDDLWGGGRIAEQIES 435

Query: 423 -DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
              L    P  E+ ++ K+  N  +D  V++  GL +  F  DTM ++   D+   T   
Sbjct: 436 QKALALLKPILENQAVLKIGQNIKYDWLVMKQQGLMIRSFD-DTMLLSYALDAGVLT--- 491

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIS 539
           ++L+AL+                       E ++G   I+ KD+    K        KIS
Sbjct: 492 HNLDALS-----------------------ERWLGHKPIAYKDLTHNGK--------KIS 520

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
           + A V+  Q         Y+A D+  TL+L++ LK +L+             + M   Y+
Sbjct: 521 SFAQVDLKQA------TFYAAEDADITLRLWQILKPQLV------------AQGMTKIYE 562

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P  ++L KME  G+LVDR+ L       R  +E     F      +    +  N+ 
Sbjct: 563 RIDRPLIKVLAKMEERGILVDRQIL------LRLSEELEQAAFILEEEIYQLAGEKFNIA 616

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 617 SPKQLGDILFG 627


>gi|424909057|ref|ZP_18332434.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae USDA 2370]
 gi|392845088|gb|EJA97610.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae USDA 2370]
          Length = 1001

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/251 (37%), Positives = 137/251 (54%), Gaps = 26/251 (10%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 723  RVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRV 782

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   + +AF+ G D H+ TA  M+                       VP+  +  
Sbjct: 783  LAHVADIPQLRNAFENGIDIHAMTASEMFG----------------------VPV--EGM 818

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    ++  EA + +  ++     +  + EA K  +
Sbjct: 819  PSEVRRRAKAINFGIIYGISAFGLANQLGIARSEAGEYIKKYFERFPGIRDYMEATKAFA 878

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+ I      
Sbjct: 879  RENGYVETIFGRRAHYPEIRSSNPSVKAFNERAAINAPIQGSAADIIRRAMVRIEPALEA 938

Query: 1061 KELGWKLLLQV 1071
            + L  ++LLQV
Sbjct: 939  ENLSARMLLQV 949



 Score = 49.7 bits (117), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 137/345 (39%), Gaps = 107/345 (31%)

Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIY---SGPEADFGNGKSCIWV 414
           +W+   +   +V A DTE   +D  Q       E++ FS+    +G +A  G+     ++
Sbjct: 391 LWVAAARETGVV-AFDTETTSLDPMQ------AELVGFSLAIADNGKDAS-GSDIRAAYI 442

Query: 415 DLL--DGGGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYG 455
            L    G G DL ++         PF           ED ++ KV  N  +D  +++ +G
Sbjct: 443 PLTHKTGSGGDLFSDGIRLAEGQVPFDEALVRLKDLLEDEAVLKVAQNLKYDYLLMKRHG 502

Query: 456 LKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFM 515
           + +  F  DTM ++ + ++ + T G  SL                           E ++
Sbjct: 503 VVMQSFD-DTMLISYVLEAGKATHGMDSLS--------------------------ERWL 535

Query: 516 GK--ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
           G   I  KD+ G         +GK S      ++ +       +Y+A D+  TL+L+ +L
Sbjct: 536 GHTPIPYKDVAG---------SGKSSVTFDFVDIDKA-----TAYAAEDADVTLRLWMAL 581

Query: 574 KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----E 628
           K +L+             + +   Y+   +P   +L  ME  G+ VDR+ LS +     +
Sbjct: 582 KPRLVS------------ERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQ 629

Query: 629 KVARAEQEA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
           K A  E+E    A  RF              N+GS  QL  +LFG
Sbjct: 630 KAAAFEEEIYELAGERF--------------NIGSPKQLGDILFG 660


>gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C]
          Length = 968

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/269 (37%), Positives = 143/269 (53%), Gaps = 34/269 (12%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + ++ILP          GRVH + ++  T TGRLS+  PNLQN P    +  KIR AF+A
Sbjct: 680  LPSYILP--------TTGRVHTNYSLATTLTGRLSSSEPNLQNIPVRTAEGRKIRAAFVA 731

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              G+ L+ ADY Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+     AVE     
Sbjct: 732  SKGHLLLSADYSQIELRILAHVADITALKEAFAKGQDIHAMTASQMFG---VAVE----- 783

Query: 924  LEWHGEDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLW 982
                               SE RR+AK +NF I YG +P GLA    +S +EA   + L+
Sbjct: 784  ----------------GMTSEIRRRAKAINFGIIYGISPFGLASQLGISRKEASDYIQLY 827

Query: 983  YNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGS 1042
            +     +  + E  K  +R   +V T+ GR   +P IK+     R+  ERAAIN P+QGS
Sbjct: 828  FERFPGIEDYMERTKIFARHYGYVETIFGRRIHYPEIKTDKPQIRSFNERAAINAPIQGS 887

Query: 1043 AADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AAD+   AM+++      + L  K+LLQV
Sbjct: 888  AADIIRRAMIQMENALEKERLSAKMLLQV 916



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 134/334 (40%), Gaps = 85/334 (25%)

Query: 415 DLLDGGGRDL--------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           D L GGGR +        L    P  E+ ++ K+  N  +D  V++ + + +  F  DTM
Sbjct: 421 DNLLGGGRIVPQIETQKALALLKPILENQAVLKIGQNIKYDWLVMKQHNIVMCSFD-DTM 479

Query: 467 HMARLWDSSRRTEGGYSLEA--LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIF 524
            ++            Y+LEA   T    V+SE    ++               IS KD+ 
Sbjct: 480 LLS------------YALEAGISTHGMDVLSERWLGHKP--------------ISYKDLT 513

Query: 525 GRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKL 584
             R+        KI + A V+  Q         Y+A D+  TL+L++ LK +L+      
Sbjct: 514 HSRR--------KIVSFARVDLKQAT------LYAAEDADITLRLWQVLKPQLV------ 553

Query: 585 DGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRK 644
                  + M   Y+   +P  EIL +ME  G+LVDR+ LS      R   E A      
Sbjct: 554 ------AQKMTKIYERLDRPLIEILARMEERGILVDRQILS------RLSGELAQTVLNL 601

Query: 645 WASKHCPDAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAE 699
               +    +  N+ S  QL  +LFG     G   +K    S   + +      E + AE
Sbjct: 602 GEEIYQLVGEKFNIASPKQLGDILFGKMGLPGGTKTKSGQWSTSAQTL------EELAAE 655

Query: 700 GKKTPSK---FRNIT-LRSIGVD-LPTEMYTATG 728
           G   P K   +R +T L+S   D LP+ +   TG
Sbjct: 656 GHILPRKIIDWRQLTKLKSTYTDALPSYILPTTG 689


>gi|418299118|ref|ZP_12910953.1| DNA polymerase I [Agrobacterium tumefaciens CCNWGS0286]
 gi|355535412|gb|EHH04700.1| DNA polymerase I [Agrobacterium tumefaciens CCNWGS0286]
          Length = 999

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/251 (37%), Positives = 137/251 (54%), Gaps = 26/251 (10%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 721  RVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRV 780

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   + +AF+ G D H+ TA  M+                       VP+  +  
Sbjct: 781  LAHVADIPQLRNAFENGIDIHAMTASEMFG----------------------VPV--EGM 816

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    ++  EA   +  ++     +  + EA K  +
Sbjct: 817  PSEVRRRAKAINFGIIYGISAFGLANQLSIARSEAGDYIKKYFERFPGIRDYMEATKAFA 876

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+ I      
Sbjct: 877  RENGYVETIFGRRAHYPEIRSSNPSVKAFNERAAINAPIQGSAADIIRRAMVRIEPALEA 936

Query: 1061 KELGWKLLLQV 1071
            ++L  ++LLQV
Sbjct: 937  EKLSARMLLQV 947



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 129/338 (38%), Gaps = 114/338 (33%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL---------DG 419
           V A DTE   +D  Q       E++ FS+     A   NGK     D+           G
Sbjct: 399 VVAFDTETTSLDPMQ------AELVGFSL-----AIADNGKDATGTDIRAAYVPLTHKTG 447

Query: 420 GGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYGLKVSGFH 462
            G DL ++         PF           ED ++ KV  N  +D  +++ +G+ +  F 
Sbjct: 448 SGGDLFSDGIRMAEGQVPFAEALARLKDLLEDEAVLKVAQNLKYDYLLMKRHGVVMQSFD 507

Query: 463 ADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISM 520
            DTM ++ + ++ + T G  SL                           E ++G   I+ 
Sbjct: 508 -DTMLISYVLEAGKATHGMDSLS--------------------------ERWLGHTPIAY 540

Query: 521 KDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEM 580
           KD+ G         +GK S      ++ +       +Y+A D+  TL+L+ +LK +L   
Sbjct: 541 KDVAG---------SGKSSVTFDFVDIDKA-----TAYAAEDADVTLRLWMALKPRL--- 583

Query: 581 SWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQ 635
                      + +   Y+   +P   +L  ME  G+ VDR+ LS +     +K A  E+
Sbjct: 584 ---------AAERLTSVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAASFEE 634

Query: 636 EA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
           E    A  RF              N+GS  QL  +LFG
Sbjct: 635 EIYELAGERF--------------NIGSPKQLGDILFG 658


>gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
            F0295]
 gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
            F0295]
          Length = 927

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/265 (36%), Positives = 138/265 (52%), Gaps = 24/265 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + G +H S N   T TGRLS+  PNLQN P   +D  +IR+ FI   G     ADY 
Sbjct: 647  INPRTGHIHTSFNQAVTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEEGCEFFSADYS 706

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR++AHL+   +MLDAF+ G D H+ TA  +Y                   +KP   
Sbjct: 707  QIELRVMAHLSQDANMLDAFREGYDIHAATAAKIY-------------------NKPVSE 747

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            + +D    ER KAK  NF I YG T  GLA    +   EAK+ +D ++    +V  + E 
Sbjct: 748  VTRD----ERTKAKRANFGIIYGITVFGLADRLNIERAEAKQLIDGYFKMFPQVQQYMEQ 803

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K+ +R + +V T   R R  P I S   + R   ER AIN P+QGSAAD+   AM+ I 
Sbjct: 804  AKETARANGYVETFFHRRRYLPDINSGNATVRAIAERNAINAPIQGSAADIIKVAMVRIF 863

Query: 1056 KNARLKELGWKLLLQVLFFFSFSFF 1080
            +  + + +  K++LQV    +FS  
Sbjct: 864  QRFQRENIRSKMILQVHDELNFSVL 888


>gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
 gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
          Length = 874

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/254 (36%), Positives = 141/254 (55%), Gaps = 24/254 (9%)

Query: 819  GKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQL 877
             ++GR+H +      ETGRLS++ PNLQN P   ++  +IR+AF+A PG  L+ ADY Q+
Sbjct: 588  ARDGRIHTTFAQTVAETGRLSSKDPNLQNIPIRIEEGRRIRKAFVARPGCVLLSADYSQI 647

Query: 878  ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLL 937
            ELR++AH +   ++ +AF    D H+RTA  ++      V   QV  E            
Sbjct: 648  ELRVVAHFSGDPALREAFLHDQDIHTRTAAEVF-----GVPMDQVTPEM----------- 691

Query: 938  KDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARK 997
                   RR+AK +NF + YG+T  GLAR   +S  EA+  ++ ++ +   V  + E +K
Sbjct: 692  -------RRQAKAVNFGLIYGQTDFGLARSVGISRAEARAFIETYFAKFAGVRRYMEEKK 744

Query: 998  KESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKN 1057
             E+R   +V TL GR R  P I     + R + ER AINTP+QG+AAD+   AM+ + + 
Sbjct: 745  AEAREKGYVTTLDGRRRPLPEINHRVFTIRQNAERMAINTPIQGTAADLMKRAMIAVRRA 804

Query: 1058 ARLKELGWKLLLQV 1071
             R + L  +++LQV
Sbjct: 805  MREEGLSARMILQV 818


>gi|387770848|ref|ZP_10127021.1| DNA-directed DNA polymerase [Pasteurella bettyae CCUG 2042]
 gi|386903269|gb|EIJ68085.1| DNA-directed DNA polymerase [Pasteurella bettyae CCUG 2042]
          Length = 956

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/256 (37%), Positives = 138/256 (53%), Gaps = 25/256 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ K GRVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA PG  +I ADY 
Sbjct: 677  VNPKTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIARPGFKVIAADYS 736

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL++ K ++ AF  G D H  TA  ++    + V + Q              
Sbjct: 737  QIELRIMAHLSSDKGLMTAFSEGKDIHRSTAAEIFGLSLDKVTSEQ-------------- 782

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR AK +NF + YG +  GL+R   +S  +A+K +DL++     V  +   
Sbjct: 783  ---------RRSAKAINFGLIYGMSSFGLSRQLGISRGDAQKYMDLYFQRYPGVQIFMTE 833

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +++++   +V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM++I 
Sbjct: 834  VREKAKSQGYVETLFGRRLYLPEINSSNAMRRKAAERVAINAPMQGTAADIIKRAMIDID 893

Query: 1056 KNARLKELGWKLLLQV 1071
            K A L +    +++QV
Sbjct: 894  K-AILNDPDILMIMQV 908


>gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
 gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
          Length = 962

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 156/306 (50%), Gaps = 32/306 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   EQ A++       L E  ++  L S +   LP     ++   GRVH 
Sbjct: 638  KGAPSTNEEVL--EQLAQQGHLVPKLLSEHRALSKLKSTYTDKLP---KMINQHTGRVHT 692

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   +   +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 693  SYHQAVTTTGRLSSSDPNLQNIPIRTEAGRRIRQAFIARDGYKIVAADYSQIELRIMAHL 752

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN + M+ AF  G D H  TA  ++         G  L E   E              +R
Sbjct: 753  ANDEGMITAFANGQDIHQATAAEIF---------GLSLAEVTSE--------------QR 789

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GLA    +S +EAK+ +  ++     V  +    ++ + +  +
Sbjct: 790  RSAKAINFGLIYGMSDFGLANQLAISRDEAKEYMARYFQRYPNVQQFMRDIRESASVKGY 849

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TL GR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I K  R  +   
Sbjct: 850  VETLFGRRLYLPEIKSNNAIRRKAAERLAINAPMQGTAADIIKIAMISIDKQIRADQ-NI 908

Query: 1066 KLLLQV 1071
            K+++QV
Sbjct: 909  KMIMQV 914


>gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363]
          Length = 877

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/252 (34%), Positives = 142/252 (56%), Gaps = 23/252 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            +G++H   +   T+TGRLS+  PNLQN P   ++  KIR+AF+    + L+ +DY Q+EL
Sbjct: 600  DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSSDYSQIEL 659

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAH++  + ++DAFK G D H+ TAM ++      +E  +                 D
Sbjct: 660  RVLAHISADEHLIDAFKHGADIHTSTAMRVF-----GIEKAE-----------------D 697

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
              A++RR AK +NF + YG +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E
Sbjct: 698  VTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVRE 757

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +R    V T+  R R+ P I +   + R   ER AIN+P+QGSAAD+   AM+ + K   
Sbjct: 758  ARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALT 817

Query: 1060 LKELGWKLLLQV 1071
             ++   KLLLQV
Sbjct: 818  ERQSKSKLLLQV 829


>gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse]
 gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse]
          Length = 968

 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/258 (37%), Positives = 139/258 (53%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +  K GR+H + ++  T TGRLS+  PNLQN P    +  KIR AFIA  G+ L+ AD
Sbjct: 682  SYILSKTGRIHTNYSLAITSTGRLSSSEPNLQNIPVRTTEGRKIRTAFIAPKGHMLLSAD 741

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELRILAH+A+  ++ +AF  G D H+ TA  M+           V +E    D   
Sbjct: 742  YSQIELRILAHIADIIALKEAFAQGQDIHAITASQMF----------GVAIEGMNSDI-- 789

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+AK +NF I YG +  GLA    +S +EA   + L++     +  + 
Sbjct: 790  -----------RRRAKAINFGIIYGISAFGLANQLGLSRQEASHYIQLYFERFPGIKDYM 838

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K  +  + +V T+ GR   +P IK+     R+  ERAAIN P+QGSAAD+   AM++
Sbjct: 839  EMTKNFACRNGYVETIFGRRIHYPEIKAANLQVRSFNERAAINAPIQGSAADIIRRAMIQ 898

Query: 1054 ISKNARLKELGWKLLLQV 1071
            +      ++L  K+LLQV
Sbjct: 899  MENALEKEKLSAKMLLQV 916



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 128/317 (40%), Gaps = 73/317 (23%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           R  L    P  ED ++ K+  N  +D  V++ YG+ +  F  DTM ++   D+       
Sbjct: 436 RKALTLLKPILEDQAVLKIGQNIKYDWLVMKQYGIVIRCFD-DTMLLSYALDAG------ 488

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
               ALT +   +SE    ++               I+ KD+    K        KI++ 
Sbjct: 489 ----ALTHNMDALSERWLGHKP--------------IAYKDLTHNGK--------KITSF 522

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
           A V+  Q         Y+A D+  TL+L++ LK +L+             + M   Y+  
Sbjct: 523 AQVDLKQAT------LYAAEDADITLRLWQVLKPQLV------------ARGMTKVYERL 564

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            +P  E+L KME  G+LVDR+ L       R   E A   F      +    +  N+ S 
Sbjct: 565 DRPLVEVLAKMEERGILVDRQIL------LRLSGELAQAAFILEEEIYQLAGEKFNLASP 618

Query: 662 TQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSK---FRNIT-L 712
            QL  +LFG     G   +K    S   + +      E + AEG   P K   +R +  L
Sbjct: 619 KQLGGILFGKMSLPGGTRTKSGQWSTSAQTL------EELAAEGHILPRKIIDWRQLAKL 672

Query: 713 RSIGVD-LPTEMYTATG 728
           +S   D LP+ + + TG
Sbjct: 673 KSTYADALPSYILSKTG 689


>gi|365834656|ref|ZP_09376100.1| DNA-directed DNA polymerase [Hafnia alvei ATCC 51873]
 gi|364568931|gb|EHM46565.1| DNA-directed DNA polymerase [Hafnia alvei ATCC 51873]
          Length = 933

 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 161/308 (52%), Gaps = 36/308 (11%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCS 827
            GA ++N ++ A  + A +  +  + + E   +  L S +   LP     ++   GRVH S
Sbjct: 608  GAPSTNEEVLA--ELAEQGFELPTIILEHRGLAKLKSTYTDKLP---QMINPATGRVHTS 662

Query: 828  LN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLA 886
             +   T TGRLS+  PNLQN P    +  +IRQAFIA  G  ++ ADY Q+ELRI+AHL+
Sbjct: 663  YHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYKIVAADYSQIELRIMAHLS 722

Query: 887  NCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERR 946
              K +L AF AG D H  TA  ++                          L+D  + +RR
Sbjct: 723  GDKGLLTAFAAGKDIHRATAAEVFGLK-----------------------LEDVTSEQRR 759

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
             AK +NF + YG +  GLAR   ++  EA++ +DL++     VL + E  ++++    +V
Sbjct: 760  SAKAINFGLIYGMSAFGLARQLNIARGEAQRYMDLYFERYPGVLEYMERTRQQAAEQGYV 819

Query: 1007 HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL---KEL 1063
             TL GR    P I S    +R   ERAAIN P+QG+AAD+   AM  IS +A L   KE 
Sbjct: 820  ETLDGRRLYLPEIHSRNGMRRKGAERAAINAPMQGTAADIIKRAM--ISVDAWLLQQKEP 877

Query: 1064 GWKLLLQV 1071
              ++++QV
Sbjct: 878  LVRMIMQV 885


>gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015]
 gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015]
          Length = 900

 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/257 (36%), Positives = 142/257 (55%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +  K GRVH S +     TGRLS+  PNLQN P   ++  +IR+AF+A PG+ ++ ADY 
Sbjct: 620  IDSKTGRVHTSYHQAVAATGRLSSSDPNLQNIPIRSEEGRRIREAFVAEPGHKILAADYS 679

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  ++++ AFK G D H  TA  ++    + VE+ Q              
Sbjct: 680  QIELRIMAHLSGDETLIRAFKEGRDIHQATASEVFGVPLDEVESEQ-------------- 725

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF + YG +  GLA+   +S  EA+  VD ++     V  + E 
Sbjct: 726  ---------RRRAKAVNFGLIYGMSAFGLAKQLGISRGEAQGYVDTYFERYPGVRDYMER 776

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             ++++R   +V T  GR    P I+S    +R H ER AIN P+QG+AAD+   AM+ I 
Sbjct: 777  TREQAREQGYVETEFGRRLYLPEIQSRNVPRRQHAERTAINAPMQGTAADIIKRAMIAI- 835

Query: 1056 KNARLKEL-GWKLLLQV 1071
             +A  KEL   ++++QV
Sbjct: 836  HDALEKELPDVRMVMQV 852


>gi|449123703|ref|ZP_21760025.1| DNA polymerase I [Treponema denticola OTK]
 gi|448943956|gb|EMB24838.1| DNA polymerase I [Treponema denticola OTK]
          Length = 944

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 141/256 (55%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 664  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 724  QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF-----AVD----------------- 761

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 762  -IKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAN 820

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V T++GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 821  ICQEAEQRGYVETIMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 880

Query: 1056 KNARLKELGWKLLLQV 1071
            K  + ++L   +LLQV
Sbjct: 881  KVLKKQKLDASILLQV 896


>gi|430851663|ref|ZP_19469398.1| DNA polymerase I [Enterococcus faecium E1258]
 gi|430542245|gb|ELA82353.1| DNA polymerase I [Enterococcus faecium E1258]
          Length = 881

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAADV   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADVLKIAMIELDK--RLKETGLQATMLLQV 833


>gi|408788349|ref|ZP_11200070.1| DNA polymerase I [Rhizobium lupini HPC(L)]
 gi|408485938|gb|EKJ94271.1| DNA polymerase I [Rhizobium lupini HPC(L)]
          Length = 998

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/251 (37%), Positives = 137/251 (54%), Gaps = 26/251 (10%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  + +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY Q+ELR+
Sbjct: 720  RVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRV 779

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   + +AF+ G D H+ TA  M+                       VP+  +  
Sbjct: 780  LAHVADIPQLRNAFENGIDIHAMTASEMFG----------------------VPV--EGM 815

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    ++  EA + +  ++     +  + EA K  +
Sbjct: 816  PSEVRRRAKAINFGIIYGISAFGLANQLGIARSEAGEYIKKYFERFPGIRDYMEATKAFA 875

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I+S   S +   ERAAIN P+QGSAAD+   AM+ I      
Sbjct: 876  RENGYVETIFGRRAHYPEIRSSNPSVKAFNERAAINAPIQGSAADIIRRAMVRIEPALEA 935

Query: 1061 KELGWKLLLQV 1071
            + L  ++LLQV
Sbjct: 936  ENLSARMLLQV 946



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 137/345 (39%), Gaps = 107/345 (31%)

Query: 358 VWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIY---SGPEADFGNGKSCIWV 414
           +W+   +   +V A DTE   +D  Q       E++ FS+    +G +A  G+     ++
Sbjct: 388 LWVAAARETGVV-AFDTETTSLDPMQ------AELVGFSLAIADNGKDAS-GSDIRAAYI 439

Query: 415 DLL--DGGGRDLLNEF-------APF----------FEDPSIKKVWHNYSFDNHVLENYG 455
            L    G G DL ++         PF           ED ++ KV  N  +D  +++ +G
Sbjct: 440 PLTHKTGSGGDLFSDGIRLAEGQVPFDEALVRLKDLLEDEAVLKVAQNLKYDYLLMKRHG 499

Query: 456 LKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFM 515
           + +  F  DTM ++ + ++ + T G  SL                           E ++
Sbjct: 500 VVMQSFD-DTMLISYVLEAGKATHGMDSLS--------------------------ERWL 532

Query: 516 GK--ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573
           G   I  KD+ G         +GK S      ++ +       +Y+A D+  TL+L+ +L
Sbjct: 533 GHTPIPYKDVAG---------SGKSSVTFDFVDIDKA-----TAYAAEDADVTLRLWMAL 578

Query: 574 KKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEI-----E 628
           K +L+             + +   Y+   +P   +L  ME  G+ VDR+ LS +     +
Sbjct: 579 KPRLVS------------ERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQ 626

Query: 629 KVARAEQEA---AVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
           K A  E+E    A  RF              N+GS  QL  +LFG
Sbjct: 627 KAAAFEEEIYELAGERF--------------NIGSPKQLGDILFG 657


>gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73]
 gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73]
          Length = 968

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/258 (37%), Positives = 138/258 (53%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S +  K GRVH + ++  T TGRLS+  PNLQN PA   +  KIR AFIA  G+ L+ AD
Sbjct: 682  SYILTKTGRVHTNYSLATTSTGRLSSSEPNLQNIPARTAEGRKIRAAFIASEGHILLSAD 741

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELRILAH A+  ++ +AF  G D H+ TA  M+           V +E    D   
Sbjct: 742  YSQIELRILAHFADIGALKEAFLQGQDIHAMTASQMF----------GVAVEGMPSDI-- 789

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       R++AK +NF I YG +  GLA    +S +EA   + L++     +  + 
Sbjct: 790  -----------RQRAKAINFGIIYGISSFGLANQLGISRKEAGNYIRLYFERFPGIEDYM 838

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K  +R   +V T+ GR   +P IK+     R   ERAAIN P+QGSAAD+   AM++
Sbjct: 839  EKTKMFARHHGYVETIFGRRIHYPEIKTANPQIRAFNERAAINAPIQGSAADIIRRAMIQ 898

Query: 1054 ISKNARLKELGWKLLLQV 1071
            +      ++L  K+LLQV
Sbjct: 899  VENALEKEKLSAKMLLQV 916



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 159/389 (40%), Gaps = 89/389 (22%)

Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGP-EADFGNGKSCIWVDLL 417
           W+L  + K    A DTE   +D  Q       +++ FS+   P +A +   +     D L
Sbjct: 371 WLLEAE-KQGYFAFDTETTSLDPMQ------AKLVGFSLALQPGKAAYIPLEHTAGEDGL 423

Query: 418 DGGGRDL--------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMA 469
             GGR +        L    P  E+ +I K+  N  +D  V++ Y + +  F  DTM + 
Sbjct: 424 LAGGRIVPQIETQKALALLKPILENQAILKIGQNIKYDWLVMKQYDIVMRSFD-DTMLL- 481

Query: 470 RLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKL 529
                S   E G S   +     V+SE    ++               I+ KD+    K 
Sbjct: 482 -----SYALEAGISTHGI----DVLSERWLGHKP--------------ITYKDLTYNGK- 517

Query: 530 KKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPV 589
                  KI + A ++  Q         Y+A D+  TL+L++ LK +L+           
Sbjct: 518 -------KIVSFAQIDLKQAT------LYAAEDADITLRLWQVLKPQLV----------- 553

Query: 590 PGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKH 649
             + M   Y+   +P  EIL +ME  G+LVDR+ LS   +++    +AA+N   +    +
Sbjct: 554 -AQRMTKIYERLDRPLIEILARMEERGILVDRQILS---RLSGELAQAALNLEEEI---Y 606

Query: 650 CPDAKYMNVGSDTQLRQLLFG-----GKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTP 704
               +  N+ S  QL  +LFG     G   +K+   S   + +      E +  EG   P
Sbjct: 607 QLVGERFNIASPKQLGDILFGKMGLPGGAKTKNGQWSTSAQTL------EELATEGHILP 660

Query: 705 SK---FRNIT-LRSIGVD-LPTEMYTATG 728
            K   +R +  L+S   D LP+ + T TG
Sbjct: 661 RKIVDWRQLAKLKSTYTDALPSYILTKTG 689


>gi|453329342|dbj|GAC88534.1| DNA polymerase I [Gluconobacter thailandicus NBRC 3255]
          Length = 929

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/252 (37%), Positives = 140/252 (55%), Gaps = 28/252 (11%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  +  T TGRLS+  PNLQN P   ++   IR+AF+A PG  L+ ADY Q+ELR+
Sbjct: 655  RVHTSFQMAITTTGRLSSNEPNLQNIPIRTEEGALIRKAFVAAPGRVLVSADYSQIELRL 714

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A  + +L+AF  G D H+RTA  ++             +   G D    PL     
Sbjct: 715  LAHVAKIEPLLEAFHLGQDIHARTASEVFG------------IPIEGMD----PL----- 753

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GL R  ++S  EA+  +D ++     +  + +  K+E++
Sbjct: 754  --TRRRAKAINFGIIYGISAFGLGRQLQISPGEARSYIDAYFARYPGIRAYMDRTKEEAK 811

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T  GR    P IK    ++R++ ER AIN P+QG AAD+   AM+ +++  +L 
Sbjct: 812  EQGYVLTPFGRRCYVPGIKDKNGARRSYAERQAINAPLQGGAADIIKRAMVRLAR--KLP 869

Query: 1062 ELGWK--LLLQV 1071
            E G K  +LLQV
Sbjct: 870  ETGLKAQMLLQV 881


>gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
 gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
          Length = 932

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/246 (39%), Positives = 132/246 (53%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYR 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF AG D H  TA  ++      V T Q       
Sbjct: 704  IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLPLEGVTTEQ------- 756

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 757  ----------------RRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 801  VLEYMERTRKQAADQGYVTTLDGRRLYLPDINSRNANRRKAAEREAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 861  RAMIAV 866


>gi|385839456|ref|YP_005877086.1| DNA polymerase I [Lactococcus lactis subsp. cremoris A76]
 gi|358750684|gb|AEU41663.1| DNA polymerase I [Lactococcus lactis subsp. cremoris A76]
          Length = 826

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 157/293 (53%), Gaps = 31/293 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 508  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 567

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 568  SVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHG 627

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ T+M ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 628  ADIHTSTSMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 665

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 666  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 725

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQV
Sbjct: 726  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALTERQSKSKLLLQV 778


>gi|336397663|ref|ZP_08578463.1| DNA polymerase I [Prevotella multisaccharivorax DSM 17128]
 gi|336067399|gb|EGN56033.1| DNA polymerase I [Prevotella multisaccharivorax DSM 17128]
          Length = 935

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/265 (36%), Positives = 141/265 (53%), Gaps = 24/265 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +  K+G +H S N   T TGRLS+  PNLQN P  + D  +IR+ FI   G     ADY 
Sbjct: 655  IDPKDGHIHTSFNQAITATGRLSSSDPNLQNIPVRDDDGKEIRKCFIPDEGCRWFSADYS 714

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  ++M++AF+ G D H  TA  ++                    K P+ 
Sbjct: 715  QIELRIMAHLSGDENMIEAFREGFDIHRATAAKIW--------------------KEPME 754

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             + D   ++R+KAK  NF I YG T  GLA+   +S  EA++ +D ++    +V  + EA
Sbjct: 755  TVSD---TQRKKAKQANFGIIYGITAFGLAQRMDISNGEARQLIDDYFKTFPKVRQYMEA 811

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K+++    +  T+ GR R  P I S   + R   ER AIN P+QGS AD+   AM+ I 
Sbjct: 812  AKQKASEKGYAETMFGRRRYLPDIHSRNNTVRGFAERNAINAPIQGSEADIIKLAMIRIW 871

Query: 1056 KNARLKELGWKLLLQVLFFFSFSFF 1080
            K  + + L  K+ LQV    +FS +
Sbjct: 872  KRFKAEGLRSKMSLQVHDELNFSVY 896



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 99/249 (39%), Gaps = 60/249 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +++ F P +E   I K+  N  +D  VL NYG+ + G   DTM    +W    R    Y 
Sbjct: 408 MVDIFKPLYESQDILKIGQNIKYDYEVLRNYGIDIQGTMFDTMLAHYVWQPELRHNMDYM 467

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
            E L  D + +  ++   QK  S+ N          M+D                     
Sbjct: 468 AETLL-DYETVHIEELIGQKGKSQKN----------MRD--------------------- 495

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
              LQ EE      Y+A D+  TL+L   L+ KL E++                ++E   
Sbjct: 496 ---LQPEE---VYEYAAEDADITLQLKNVLEPKLKEVNAT------------RLFEEIEM 537

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD--AKYMNVGSD 661
           P  ++L  ME  G+ +D E L       +A Q+A   R  ++  KH  +   +  N+ S 
Sbjct: 538 PLVKVLADMEINGVRLDTEQL-------KATQKAFTERMNQY-EKHAYEEAGEEFNISSP 589

Query: 662 TQLRQLLFG 670
            Q+  +LFG
Sbjct: 590 RQVGDILFG 598


>gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
 gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
          Length = 877

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 157/293 (53%), Gaps = 31/293 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 559  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 619  SVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHG 678

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ T+M ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 679  ADIHTSTSMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 717  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            I +   + R   ER AIN+P+QGSAAD+   AM+ + K    ++   KLLLQV
Sbjct: 777  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALTERQSKSKLLLQV 829


>gi|333978063|ref|YP_004516008.1| DNA polymerase I [Desulfotomaculum kuznetsovii DSM 6115]
 gi|333821544|gb|AEG14207.1| DNA polymerase I [Desulfotomaculum kuznetsovii DSM 6115]
          Length = 880

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 144/257 (56%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAV-PGNSLIVADY 874
            ++ + GR+H + +   T TGRLS+  PNLQN P   ++  KIR+ FI    GN ++ ADY
Sbjct: 597  INPETGRLHTTFHQTVTATGRLSSSDPNLQNIPIRMEEGRKIRRVFIPRREGNLILTADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRILAH+A   ++L+AF+ G D H+RTA  ++         G  + E         
Sbjct: 657  SQIELRILAHMAGDPNLLEAFRQGQDIHTRTAAEVF---------GVAITE--------- 698

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                   A  R +AK +NF I YG +  GLARD  VS +EA++ ++ ++     V  + E
Sbjct: 699  -----VTADMRGRAKAVNFGIVYGISDFGLARDINVSRQEARQYIENYFARYAGVKAFIE 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +++R   +V TLL R R  P + S  R+ R   ER AINTP+QGSAAD+   AM+ I
Sbjct: 754  RTIQQAREKGYVTTLLNRRRYLPDLFSANRNVRMFGERTAINTPIQGSAADIIKLAMVRI 813

Query: 1055 SKNARLKELGWKLLLQV 1071
             +  + + L  +++LQV
Sbjct: 814  HRELKDRGLATRMILQV 830


>gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16]
 gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16]
          Length = 877

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/259 (37%), Positives = 148/259 (57%), Gaps = 29/259 (11%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVP-GNSLIVADY 874
            +  + G+VH   N   T+TGRLS+  PNLQN P   ++  KIR+AF+A   G  ++ ADY
Sbjct: 596  IDSETGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRKAFVASKEGWKIVAADY 655

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  + M +AF  G D H++TAM+++ H++    T  +            
Sbjct: 656  SQIELRVLAHISGDERMKEAFLTGMDIHTKTAMDVF-HVKREEVTDLM------------ 702

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                      RR AK +NF I YG +  GL++   ++ +EAK  +D +     +V  + E
Sbjct: 703  ----------RRSAKAVNFGIVYGISDYGLSQSLGITRKEAKDFIDRYLASYPQVKAYME 752

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               KE++   +V TLL R R  P +KS   +QR+  ER A+NTP+QG+AAD+   AM+++
Sbjct: 753  NVVKEAKEKGYVQTLLARRRYLPELKSRNFNQRSFAERTAMNTPIQGTAADIIKRAMVKM 812

Query: 1055 SKNARLKELGWK--LLLQV 1071
            S+   L+E G K  +LLQV
Sbjct: 813  SEA--LEETGLKANMLLQV 829


>gi|340708407|pdb|3PO4|A Chain A, Structure Of A Mutant Of The Large Fragment Of Dna
            Polymerase I From Thermus Aquaticus In Complex With A
            Blunt-Ended Dna And Ddatp
 gi|340708410|pdb|3PO5|A Chain A, Structure Of A Mutant Of The Large Fragment Of Dna
            Polymerase I From Thermus Auqaticus In Complex With An
            Abasic Site And Ddatp
 gi|340708431|pdb|3PY8|A Chain A, Crystal Structure Of A Mutant Of The Large Fragment Of Dna
            Polymerase I From Thermus Aquaticus In A Closed Ternary
            Complex With Dna And Ddctp
          Length = 540

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 154/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRLS
Sbjct: 225  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLS 283

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AFIA  G  L+  DY Q ELR+LAHL+  ++++  F+ G
Sbjct: 284  SSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQKELRVLAHLSGDENLIRVFQEG 343

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 344  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 380

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 381  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 440

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 441  LEARVKSVREAAERKAFNMPVQGTAADLMKLAMVKLFP--RLEEMGARMLLQV 491


>gi|431071631|ref|ZP_19494602.1| DNA polymerase I [Enterococcus faecium E1604]
 gi|430567264|gb|ELB06350.1| DNA polymerase I [Enterococcus faecium E1604]
          Length = 881

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|373857545|ref|ZP_09600286.1| DNA polymerase I [Bacillus sp. 1NLA3E]
 gi|372452677|gb|EHP26147.1| DNA polymerase I [Bacillus sp. 1NLA3E]
          Length = 877

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 156/284 (54%), Gaps = 26/284 (9%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQP 848
            D I  +     +  L S +I  L    V  +  +VH   N   T+TGRLS+  PNLQN P
Sbjct: 570  DIIKEILHYRQLGKLQSTYIEGLLKV-VDPETLKVHTRYNQALTQTGRLSSTDPNLQNIP 628

Query: 849  ALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
               ++  KIRQAFI + PG  +  ADY Q+ELR+LA +A  + +++AFK G D H++TAM
Sbjct: 629  IRLEEGRKIRQAFIPSEPGWMMFAADYSQIELRVLADIAEDEKLIEAFKEGLDIHTKTAM 688

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
            +++ H+                        +D  +S RR+AK +NF I YG +  GL+++
Sbjct: 689  DVF-HVAK----------------------EDVTSSMRRQAKAVNFGIIYGISDYGLSQN 725

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ ++A K +DL+      V  + E   K+++    V TLL R R  P I S   + R
Sbjct: 726  LGITRKDAGKFIDLYLQSYPRVKDYMEDIVKDAKQKGFVSTLLHRRRYIPEITSRNFNVR 785

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +  ER A+NTP+QGSAAD+   AM+++++  + + +  +LLLQV
Sbjct: 786  SFAERTAMNTPIQGSAADIIKKAMIDMAERLKTEGIKARLLLQV 829


>gi|424765986|ref|ZP_18193348.1| DNA-directed DNA polymerase [Enterococcus faecium TX1337RF]
 gi|430841379|ref|ZP_19459298.1| DNA polymerase I [Enterococcus faecium E1007]
 gi|431585969|ref|ZP_19520484.1| DNA polymerase I [Enterococcus faecium E1861]
 gi|402412993|gb|EJV45344.1| DNA-directed DNA polymerase [Enterococcus faecium TX1337RF]
 gi|430494155|gb|ELA70405.1| DNA polymerase I [Enterococcus faecium E1007]
 gi|430593147|gb|ELB31133.1| DNA polymerase I [Enterococcus faecium E1861]
          Length = 881

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont]
          Length = 929

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/248 (38%), Positives = 130/248 (52%), Gaps = 32/248 (12%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH S +   T TGRLS+  PNLQN P   ++  +IRQAFIA     ++ ADY Q+EL
Sbjct: 652  TGRVHTSYHQAVTATGRLSSNDPNLQNIPVRNEEGRRIRQAFIAGADKRIVAADYSQIEL 711

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K +LDAF  G D H  TA  ++         G  L +  GE          
Sbjct: 712  RIMAHLSQDKGLLDAFAQGEDIHRATASEVF---------GVALSKVSGE---------- 752

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                +RR AK +NF + YG +  GL+R   +   EAKK +DL++     VL + EA + +
Sbjct: 753  ----QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMEATRAQ 808

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +    +V TL GR    P I S    +R   ERAAIN P+QG+AAD+   AM+ +     
Sbjct: 809  AADKGYVETLDGRRLWLPDINSSNAIRRKAAERAAINAPMQGTAADIIKRAMIAVD---- 864

Query: 1060 LKELGWKL 1067
                GW L
Sbjct: 865  ----GWLL 868


>gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1]
 gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1]
          Length = 922

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 137/265 (51%), Gaps = 29/265 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            + E  S+  L S +   LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   
Sbjct: 620  ILEHRSLSKLKSTYTDKLPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRT 676

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
            ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++ 
Sbjct: 677  EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFG 736

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
               +AV T Q                       RR+AK +NF + YG +  GLAR   + 
Sbjct: 737  TDFDAVTTEQ-----------------------RRRAKAVNFGLIYGMSAFGLARQLDIP 773

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
              EA+  +D ++     VL + E  +  +    +V TL GR    P I+     +R   E
Sbjct: 774  RNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAE 833

Query: 1032 RAAINTPVQGSAADVAMCAMLEISK 1056
            RAAIN P+QG+AAD+   AM+ I++
Sbjct: 834  RAAINAPMQGTAADIIKKAMINIAQ 858



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 131/343 (38%), Gaps = 95/343 (27%)

Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
           W+   K   L+ A DTE   +D      V     + F++ +G  A        +      
Sbjct: 335 WIAKLKQASLI-AVDTETTSLDYMVAELVG----MSFAVEAGKAAYLPLAHDYV------ 383

Query: 419 GGGRDLLNEFA-----PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
           G  + L  +FA     P  ED  +KKV  N  +D  VL N G+K+ G   DTM  + +++
Sbjct: 384 GAPQQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLANAGIKLQGVVFDTMLESYVFN 443

Query: 474 S--SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
           S  SR    G +L+ L                    G+ + GF      +DI G+   + 
Sbjct: 444 SVASRHDMDGLALKYL--------------------GHKNIGF------EDIAGKGAKQL 477

Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
             +   +   AP              Y+A D+  TL+L++ L        W +L+ +P  
Sbjct: 478 TFNQIPLEVAAP--------------YAAEDADITLRLHQHL--------WPRLEKEP-- 513

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSE--------IEKVARAEQEAAVNRF 642
              +   + E   P  ++L  +E +G+L+D   L +        I+ +     E A  +F
Sbjct: 514 --QLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIAGEKF 571

Query: 643 RKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSKDDSESLP 683
                         N+GS  QL+ L F   G P +K   +  P
Sbjct: 572 --------------NLGSPKQLQVLFFEKLGYPITKKTPKGAP 600


>gi|334127246|ref|ZP_08501174.1| DNA-directed DNA polymerase I [Centipeda periodontii DSM 2778]
 gi|333389746|gb|EGK60904.1| DNA-directed DNA polymerase I [Centipeda periodontii DSM 2778]
          Length = 877

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/263 (36%), Positives = 143/263 (54%), Gaps = 31/263 (11%)

Query: 814  GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG---NSL 869
            G+ +    GRVH S N   T TGRLS+  PNLQN P   ++   +R  F   PG   + L
Sbjct: 593  GALIRPATGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRSVRALF--EPGEGYDVL 650

Query: 870  IVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGE 929
            + ADY Q+ELRILAH++   +++DAF++G D H+RTA  ++                   
Sbjct: 651  LSADYSQIELRILAHMSGDATLIDAFRSGQDIHARTASEVFG------------------ 692

Query: 930  DKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                VP+  D+  SE RR+AK +NF I YG +  GLARD  +S +EA   ++ ++     
Sbjct: 693  ----VPI--DSVTSEQRRRAKAVNFGIVYGLSDFGLARDLGISRKEAAGYIERYFERYHG 746

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            V  + +    ++  +  V TL GR R  PAI S    QR+  ER A+NTP+QG+AAD+  
Sbjct: 747  VREFLDKTIADAHTNGSVTTLYGRRRDLPAIHSRNFMQRSFAERMAMNTPIQGTAADLIK 806

Query: 1049 CAMLEISKNARLKELGWKLLLQV 1071
             AM+   +  R  ++  ++LLQV
Sbjct: 807  IAMIRADEALRAADVRSRILLQV 829


>gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H]
 gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H]
          Length = 944

 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/250 (36%), Positives = 138/250 (55%), Gaps = 24/250 (9%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  +  T TGRLS+  PNLQN P   ++  +IR+AF+A PG  L+ ADY Q+ELR+
Sbjct: 670  RVHTSFQMAITTTGRLSSNEPNLQNIPIRTEEGARIRKAFVATPGCVLLSADYSQIELRL 729

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A  + +L+AF+ G D H+RTA  ++             +   G D    PL     
Sbjct: 730  LAHVAKIEPLLEAFRLGQDIHARTASEVFG------------IPLEGMD----PL----- 768

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA+  ++S  EA+  +D ++     +  + E  K+E++
Sbjct: 769  --TRRRAKAINFGIIYGISAFGLAQQLQISPGEARSYIDAYFARYPGIRAYMERTKEEAK 826

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T  GR    P I     ++R + ER AIN P+QG AAD+   AM+ +++     
Sbjct: 827  KHGYVTTPFGRRCYVPGITEKNGARRAYAERQAINAPLQGGAADIIKRAMVHLARRLPAT 886

Query: 1062 ELGWKLLLQV 1071
             L  K++LQV
Sbjct: 887  GLKAKMVLQV 896


>gi|449128718|ref|ZP_21764964.1| DNA polymerase I [Treponema denticola SP33]
 gi|448941126|gb|EMB22030.1| DNA polymerase I [Treponema denticola SP33]
          Length = 943

 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 141/256 (55%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 663  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 722

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 723  QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF-----AVD----------------- 760

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +KD     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 761  -IKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFIAN 819

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V T++GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 820  ICQEAEQRGYVETIMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 879

Query: 1056 KNARLKELGWKLLLQV 1071
            K  + ++L   +LLQV
Sbjct: 880  KALKKQKLDASILLQV 895


>gi|414341221|ref|YP_006982742.1| DNA polymerase I [Gluconobacter oxydans H24]
 gi|411026556|gb|AFV99810.1| DNA polymerase I [Gluconobacter oxydans H24]
          Length = 930

 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/252 (37%), Positives = 140/252 (55%), Gaps = 28/252 (11%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  +  T TGRLS+  PNLQN P   ++   IR+AF+A PG  L+ ADY Q+ELR+
Sbjct: 656  RVHTSFQMAITTTGRLSSNEPNLQNIPIRTEEGALIRKAFVATPGRVLVSADYSQIELRL 715

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A  + +L+AF  G D H+RTA  ++             +   G D    PL     
Sbjct: 716  LAHVAKIEPLLEAFHLGQDIHARTASEVFG------------IPIEGMD----PL----- 754

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GL R  ++S  EA+  +D ++     +  + +  K+E++
Sbjct: 755  --TRRRAKAINFGIIYGISAFGLGRQLQISPGEARSYIDAYFARYPGIRAYMDRAKEEAK 812

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T  GR    P IK    ++R++ ER AIN P+QG AAD+   AM+ +++  +L 
Sbjct: 813  EHGYVLTPFGRRCYVPGIKDKNGARRSYAERQAINAPLQGGAADIIKRAMVRLAR--KLP 870

Query: 1062 ELGWK--LLLQV 1071
            E G K  +LLQV
Sbjct: 871  ETGLKAQMLLQV 882


>gi|410110888|dbj|BAM64800.1| DNA polymerase I [Thermus thermophilus]
          Length = 834

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 155/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL  S V  + GR+H   N   T TGRLS
Sbjct: 519  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 578  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 638  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 675  MSAHRLSQELSIPYEEASAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 735  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLREMGARMLLQV 785


>gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
 gi|225204183|gb|EEG86537.1| DNA-directed DNA polymerase [Proteus penneri ATCC 35198]
          Length = 949

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/289 (35%), Positives = 152/289 (52%), Gaps = 32/289 (11%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++    +E   + +    + E   +  L S +   LPL    V+ K  RVH 
Sbjct: 624  KGAPSTNEEVL---EELAHSHELPRLILEHRGLAKLKSTYTDKLPLM---VNSKTKRVHT 677

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 678  SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAREGFKIVAADYSQIELRIMAHL 737

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +LDAF  G D H  TA  ++                       +P L++  + +R
Sbjct: 738  SQDKGLLDAFAQGKDIHRATASEVF----------------------GIP-LEEVTSEQR 774

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL++   V   EA++ +DL++     VL + E  +K++    +
Sbjct: 775  RSAKAINFGLIYGMSAFGLSQQIGVERREAQRYMDLYFERYPGVLDYMERTRKQASEQGY 834

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM+ +
Sbjct: 835  VETLEGRRLYLPEINSKNAIRRKASEREAINAPMQGTAADIIKKAMIAV 883



 Score = 48.1 bits (113), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 108/252 (42%), Gaps = 65/252 (25%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D+L    P  ED +I K+  N  FD  ++EN G++++G H DTM  + + +S        
Sbjct: 420 DVLAALKPILEDKNILKIGQNLKFDRGIMENEGIELNGIHFDTMLESYVLNS-------- 471

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
                  +R  M  D  A +    K  T E   GK       G+ +L             
Sbjct: 472 -----VSNRHDM--DTLAEKHLNHKTTTFEEIAGK-------GKGQLT------------ 505

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
              +++ E+  L   Y+A D+  TL L+++L  ++  +         P K +   Y++  
Sbjct: 506 -FNQIEVEQATL---YAAEDADITLLLHQALYPQIEAIE--------PLKHV---YRDIE 550

Query: 603 QPFGEILVKMETEGMLVDREYLS----EI-EKVARAEQEAAVNRFRKWASKHCPDAKYMN 657
            P   +L +ME +G+L+D + L+    EI +++A  E+E                 +  N
Sbjct: 551 MPLVPVLSRMERKGVLIDAQVLAVQSQEITQRLAEIEKET-----------FALAGQEFN 599

Query: 658 VGSDTQLRQLLF 669
           + S  QL+++LF
Sbjct: 600 LSSPKQLQEILF 611


>gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32]
 gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32]
          Length = 922

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 137/265 (51%), Gaps = 29/265 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            + E  S+  L S +   LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   
Sbjct: 620  ILEHRSLSKLKSTYTDKLPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRT 676

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
            ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++ 
Sbjct: 677  EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFG 736

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
               +AV T Q                       RR+AK +NF + YG +  GLAR   + 
Sbjct: 737  TDFDAVTTEQ-----------------------RRRAKAVNFGLIYGMSAFGLARQLDIP 773

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
              EA+  +D ++     VL + E  +  +    +V TL GR    P I+     +R   E
Sbjct: 774  RNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAE 833

Query: 1032 RAAINTPVQGSAADVAMCAMLEISK 1056
            RAAIN P+QG+AAD+   AM+ I++
Sbjct: 834  RAAINAPMQGTAADIIKKAMINIAQ 858



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 131/343 (38%), Gaps = 95/343 (27%)

Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
           W+   K   L+ A DTE   +D      V     + F++ +G  A        +      
Sbjct: 335 WIAKLKQASLI-AVDTETTSLDYMVAELVG----MSFAVEAGKAAYLPLAHDYV------ 383

Query: 419 GGGRDLLNEFA-----PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
           G  + L  +FA     P  ED  +KKV  N  +D  VL N G+K+ G   DTM  + +++
Sbjct: 384 GAPQQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLANAGIKLQGVVFDTMLESYVFN 443

Query: 474 S--SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
           S  SR    G +++ L                    G+ + GF      +DI G+   + 
Sbjct: 444 SVASRHDMDGLAIKYL--------------------GHKNIGF------EDIAGKGAKQL 477

Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
             +   +   AP              Y+A D+  TL+L++ L        W +L+ +P  
Sbjct: 478 TFNQIPLEVAAP--------------YAAEDADITLRLHQHL--------WPRLEKEP-- 513

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSE--------IEKVARAEQEAAVNRF 642
              +   + E   P  ++L  +E +G+L+D   L +        I+ +     E A  +F
Sbjct: 514 --QLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIAGEKF 571

Query: 643 RKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSKDDSESLP 683
                         N+GS  QL+ L F   G P +K   +  P
Sbjct: 572 --------------NLGSPKQLQVLFFEKLGYPITKKTPKGAP 600


>gi|427396176|ref|ZP_18888935.1| DNA polymerase I [Enterococcus durans FB129-CNAB-4]
 gi|430860200|ref|ZP_19477804.1| DNA polymerase I [Enterococcus faecium E1573]
 gi|430949845|ref|ZP_19486068.1| DNA polymerase I [Enterococcus faecium E1576]
 gi|431006650|ref|ZP_19489115.1| DNA polymerase I [Enterococcus faecium E1578]
 gi|431253115|ref|ZP_19504441.1| DNA polymerase I [Enterococcus faecium E1623]
 gi|425722846|gb|EKU85737.1| DNA polymerase I [Enterococcus durans FB129-CNAB-4]
 gi|430552637|gb|ELA92365.1| DNA polymerase I [Enterococcus faecium E1573]
 gi|430557699|gb|ELA97145.1| DNA polymerase I [Enterococcus faecium E1576]
 gi|430561186|gb|ELB00463.1| DNA polymerase I [Enterococcus faecium E1578]
 gi|430578203|gb|ELB16773.1| DNA polymerase I [Enterococcus faecium E1623]
          Length = 881

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|406580958|ref|ZP_11056143.1| DNA polymerase I [Enterococcus sp. GMD4E]
 gi|406583127|ref|ZP_11058218.1| DNA polymerase I [Enterococcus sp. GMD3E]
 gi|406585545|ref|ZP_11060532.1| DNA polymerase I [Enterococcus sp. GMD2E]
 gi|406590632|ref|ZP_11064992.1| DNA polymerase I [Enterococcus sp. GMD1E]
 gi|410937197|ref|ZP_11369058.1| DNA polymerase I [Enterococcus sp. GMD5E]
 gi|404453334|gb|EKA00399.1| DNA polymerase I [Enterococcus sp. GMD4E]
 gi|404457102|gb|EKA03676.1| DNA polymerase I [Enterococcus sp. GMD3E]
 gi|404462560|gb|EKA08292.1| DNA polymerase I [Enterococcus sp. GMD2E]
 gi|404469060|gb|EKA13898.1| DNA polymerase I [Enterococcus sp. GMD1E]
 gi|410734308|gb|EKQ76228.1| DNA polymerase I [Enterococcus sp. GMD5E]
          Length = 881

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|257898348|ref|ZP_05678001.1| DNA polymerase A [Enterococcus faecium Com15]
 gi|257836260|gb|EEV61334.1| DNA polymerase A [Enterococcus faecium Com15]
          Length = 881

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|386311837|ref|YP_006008002.1| DNA polymerase I [Shewanella putrefaciens 200]
 gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200]
          Length = 922

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 137/265 (51%), Gaps = 29/265 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            + E  S+  L S +   LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   
Sbjct: 620  ILEHRSLSKLKSTYTDKLPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRT 676

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
            ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++ 
Sbjct: 677  EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFG 736

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
               +AV T Q                       RR+AK +NF + YG +  GLAR   + 
Sbjct: 737  TDFDAVTTEQ-----------------------RRRAKAVNFGLIYGMSAFGLARQLDIP 773

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
              EA+  +D ++     VL + E  +  +    +V TL GR    P I+     +R   E
Sbjct: 774  RNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAE 833

Query: 1032 RAAINTPVQGSAADVAMCAMLEISK 1056
            RAAIN P+QG+AAD+   AM+ I++
Sbjct: 834  RAAINAPMQGTAADIIKKAMINIAQ 858



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 131/343 (38%), Gaps = 95/343 (27%)

Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
           W+   K   L+ A DTE   +D      V     + F++ +G  A        +      
Sbjct: 335 WIAKLKQASLI-AVDTETTSLDYMVAELVG----MSFAVEAGKAAYLPLAHDYV------ 383

Query: 419 GGGRDLLNEFA-----PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWD 473
           G  + L  +FA     P  ED  +KKV  N  +D  VL N G+K+ G   DTM  + +++
Sbjct: 384 GAPQQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLANAGIKLQGVVFDTMLESYVFN 443

Query: 474 S--SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
           S  SR    G +L+ L                    G+ + GF      +DI G+   + 
Sbjct: 444 SVASRHDMDGLALKYL--------------------GHKNIGF------EDIAGKGAKQL 477

Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
             +   +   AP              Y+A D+  TL+L++ L        W +L+ +P  
Sbjct: 478 TFNQIPLEVAAP--------------YAAEDADITLRLHQHL--------WPRLEKEP-- 513

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSE--------IEKVARAEQEAAVNRF 642
              +   + E   P  ++L  +E +G+L+D   L +        I+ +     E A  +F
Sbjct: 514 --QLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIAGEKF 571

Query: 643 RKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSKDDSESLP 683
                         N+GS  QL+ L F   G P +K   +  P
Sbjct: 572 --------------NLGSPKQLQVLFFEKLGYPITKKTPKGAP 600


>gi|257884459|ref|ZP_05664112.1| DNA polymerase A [Enterococcus faecium 1,231,501]
 gi|431740030|ref|ZP_19528949.1| DNA polymerase I [Enterococcus faecium E2039]
 gi|257820297|gb|EEV47445.1| DNA polymerase A [Enterococcus faecium 1,231,501]
 gi|430604157|gb|ELB41657.1| DNA polymerase I [Enterococcus faecium E2039]
          Length = 881

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|336403556|ref|ZP_08584270.1| hypothetical protein HMPREF0127_01583 [Bacteroides sp. 1_1_30]
 gi|335945669|gb|EGN07477.1| hypothetical protein HMPREF0127_01583 [Bacteroides sp. 1_1_30]
          Length = 949

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 156/307 (50%), Gaps = 33/307 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+       +  + E   +  L+  +I  LPL    ++ + GRVH S N   
Sbjct: 628  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLL---INPRTGRVHTSFNQTV 684

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M
Sbjct: 685  TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +  D H+ TA  +Y      ++                  LKD  +  RRKAK  
Sbjct: 745  IDAFLSNHDIHAATAAKIY-----KID------------------LKDVGSDMRRKAKTA 781

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++     V  + +   + ++   +V T+  
Sbjct: 782  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFH 841

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + +  K++LQV
Sbjct: 842  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQV 901

Query: 1072 LFFFSFS 1078
                +FS
Sbjct: 902  HDELNFS 908


>gi|232010|sp|P30313.1|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl
            polymerase 1
 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus
 gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus]
          Length = 831

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 159/312 (50%), Gaps = 33/312 (10%)

Query: 761  GCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGK 820
            G TE+T  +   A      A  +  REA   +  + +   +  L + +I PL  + V  K
Sbjct: 503  GKTEKTGKRSTSA------AVLEALREAHPIVDRILQYRELTKLKNTYIDPLP-ALVHPK 555

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GR+H   N   T TGRLS+  PNLQN P       +IR+AF+A  G  L+V DY Q+EL
Sbjct: 556  TGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWVLVVLDYSQIEL 615

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAHL+  ++++  F+ G D H++TA  M+      V+                PL+  
Sbjct: 616  RVLAHLSGDENLIRVFQEGRDIHTQTASWMFGVSPEGVD----------------PLM-- 657

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                 RR AK +NF + YG +   L+ +  +  EEA   ++ ++    +V  W E   +E
Sbjct: 658  -----RRAAKTINFGVLYGMSAHRLSGELSIPYEEAVAFIERYFQSYPKVRAWIEGTLEE 712

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
             R   +V TL GR R  P + +  +S R   ER A N PVQG+AAD+   AM+ +    R
Sbjct: 713  GRRRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVRLFP--R 770

Query: 1060 LKELGWKLLLQV 1071
            L+ELG ++LLQV
Sbjct: 771  LQELGARMLLQV 782


>gi|389868745|ref|YP_006376168.1| DNA-directed DNA polymerase I [Enterococcus faecium DO]
 gi|388533994|gb|AFK59186.1| DNA-directed DNA polymerase I [Enterococcus faecium DO]
          Length = 881

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|257882837|ref|ZP_05662490.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|261207884|ref|ZP_05922569.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289566952|ref|ZP_06447356.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|293569014|ref|ZP_06680327.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|294623286|ref|ZP_06702151.1| DNA polymerase I [Enterococcus faecium U0317]
 gi|415897516|ref|ZP_11551091.1| DNA polymerase I [Enterococcus faecium E4453]
 gi|416134169|ref|ZP_11598225.1| DNA polymerase I [Enterococcus faecium E4452]
 gi|424802660|ref|ZP_18228137.1| DNA-directed DNA polymerase [Enterococcus faecium S447]
 gi|424859604|ref|ZP_18283595.1| DNA-directed DNA polymerase [Enterococcus faecium R499]
 gi|424950746|ref|ZP_18365895.1| DNA-directed DNA polymerase [Enterococcus faecium R496]
 gi|424955612|ref|ZP_18370438.1| DNA-directed DNA polymerase [Enterococcus faecium R446]
 gi|424960444|ref|ZP_18374959.1| DNA-directed DNA polymerase [Enterococcus faecium P1986]
 gi|424967008|ref|ZP_18380749.1| DNA-directed DNA polymerase [Enterococcus faecium P1140]
 gi|424996914|ref|ZP_18408698.1| DNA-directed DNA polymerase [Enterococcus faecium ERV165]
 gi|425000768|ref|ZP_18412316.1| DNA-directed DNA polymerase [Enterococcus faecium ERV161]
 gi|425005270|ref|ZP_18416528.1| DNA-directed DNA polymerase [Enterococcus faecium ERV102]
 gi|425012303|ref|ZP_18423127.1| DNA-directed DNA polymerase [Enterococcus faecium E422]
 gi|425016752|ref|ZP_18427297.1| DNA-directed DNA polymerase [Enterococcus faecium C621]
 gi|425032068|ref|ZP_18437156.1| DNA-directed DNA polymerase [Enterococcus faecium 515]
 gi|425041835|ref|ZP_18446215.1| DNA-directed DNA polymerase [Enterococcus faecium 511]
 gi|430822524|ref|ZP_19441102.1| DNA polymerase I [Enterococcus faecium E0120]
 gi|430854810|ref|ZP_19472522.1| DNA polymerase I [Enterococcus faecium E1392]
 gi|430865084|ref|ZP_19480842.1| DNA polymerase I [Enterococcus faecium E1574]
 gi|431229779|ref|ZP_19501982.1| DNA polymerase I [Enterococcus faecium E1622]
 gi|431370132|ref|ZP_19509831.1| DNA polymerase I [Enterococcus faecium E1627]
 gi|431743133|ref|ZP_19532014.1| DNA polymerase I [Enterococcus faecium E2071]
 gi|431767188|ref|ZP_19555643.1| DNA polymerase I [Enterococcus faecium E1321]
 gi|431772268|ref|ZP_19560610.1| DNA polymerase I [Enterococcus faecium E2369]
 gi|431775792|ref|ZP_19564062.1| DNA polymerase I [Enterococcus faecium E2560]
 gi|431785718|ref|ZP_19573741.1| DNA polymerase I [Enterococcus faecium E6045]
 gi|447912576|ref|YP_007393988.1| DNA polymerase I [Enterococcus faecium NRRL B-2354]
 gi|257818495|gb|EEV45823.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|260078267|gb|EEW65973.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289161251|gb|EFD09147.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|291588447|gb|EFF20282.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|291597314|gb|EFF28500.1| DNA polymerase I [Enterococcus faecium U0317]
 gi|364090535|gb|EHM33107.1| DNA polymerase I [Enterococcus faecium E4453]
 gi|364092681|gb|EHM35029.1| DNA polymerase I [Enterococcus faecium E4452]
 gi|402919379|gb|EJX39985.1| DNA-directed DNA polymerase [Enterococcus faecium S447]
 gi|402926267|gb|EJX46318.1| DNA-directed DNA polymerase [Enterococcus faecium R499]
 gi|402932544|gb|EJX52043.1| DNA-directed DNA polymerase [Enterococcus faecium R496]
 gi|402947722|gb|EJX65914.1| DNA-directed DNA polymerase [Enterococcus faecium P1986]
 gi|402948261|gb|EJX66414.1| DNA-directed DNA polymerase [Enterococcus faecium R446]
 gi|402955275|gb|EJX72817.1| DNA-directed DNA polymerase [Enterococcus faecium P1140]
 gi|402986673|gb|EJY01785.1| DNA-directed DNA polymerase [Enterococcus faecium ERV102]
 gi|402987448|gb|EJY02510.1| DNA-directed DNA polymerase [Enterococcus faecium ERV165]
 gi|402988506|gb|EJY03509.1| DNA-directed DNA polymerase [Enterococcus faecium ERV161]
 gi|402993760|gb|EJY08348.1| DNA-directed DNA polymerase [Enterococcus faecium E422]
 gi|403006192|gb|EJY19856.1| DNA-directed DNA polymerase [Enterococcus faecium C621]
 gi|403014048|gb|EJY27068.1| DNA-directed DNA polymerase [Enterococcus faecium 515]
 gi|403025334|gb|EJY37420.1| DNA-directed DNA polymerase [Enterococcus faecium 511]
 gi|430443101|gb|ELA53098.1| DNA polymerase I [Enterococcus faecium E0120]
 gi|430547689|gb|ELA87605.1| DNA polymerase I [Enterococcus faecium E1392]
 gi|430553162|gb|ELA92863.1| DNA polymerase I [Enterococcus faecium E1574]
 gi|430573765|gb|ELB12543.1| DNA polymerase I [Enterococcus faecium E1622]
 gi|430583879|gb|ELB22237.1| DNA polymerase I [Enterococcus faecium E1627]
 gi|430607497|gb|ELB44817.1| DNA polymerase I [Enterococcus faecium E2071]
 gi|430631196|gb|ELB67519.1| DNA polymerase I [Enterococcus faecium E1321]
 gi|430638132|gb|ELB74109.1| DNA polymerase I [Enterococcus faecium E2369]
 gi|430642440|gb|ELB78218.1| DNA polymerase I [Enterococcus faecium E2560]
 gi|430646877|gb|ELB82338.1| DNA polymerase I [Enterococcus faecium E6045]
 gi|445188285|gb|AGE29927.1| DNA polymerase I [Enterococcus faecium NRRL B-2354]
          Length = 881

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17]
 gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17]
          Length = 926

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 127/241 (52%), Gaps = 24/241 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +  + GRVH S +   T TGRLS+  PNLQN P   +   +IRQAF+A  G  L+ ADY 
Sbjct: 645  IHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRSEQGRRIRQAFVAEKGYKLLAADYS 704

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +L AF  G D H  TA  ++      V T Q              
Sbjct: 705  QIELRIMAHLSEDKGLLTAFAKGEDIHKATAAEVFGVTLEEVNTDQ-------------- 750

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR AK +NF + YG +  GLAR   V  + A++ +D ++     VLT+ + 
Sbjct: 751  ---------RRSAKAINFGLIYGMSAFGLARQLDVERKVAQQYIDRYFERYPGVLTYMDN 801

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +K++  D +V TL GR    P I +  +  +   ER AIN P+QG+AAD+   AM+E+ 
Sbjct: 802  IRKQAHEDGYVETLFGRRLYLPEINTRNKQLQQAAERTAINAPMQGTAADIIKLAMIEVE 861

Query: 1056 K 1056
            +
Sbjct: 862  R 862


>gi|430819965|ref|ZP_19438609.1| DNA polymerase I [Enterococcus faecium E0045]
 gi|430871241|ref|ZP_19483664.1| DNA polymerase I [Enterococcus faecium E1575]
 gi|430440168|gb|ELA50445.1| DNA polymerase I [Enterococcus faecium E0045]
 gi|430558198|gb|ELA97625.1| DNA polymerase I [Enterococcus faecium E1575]
          Length = 881

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|423214628|ref|ZP_17201156.1| DNA polymerase I [Bacteroides xylanisolvens CL03T12C04]
 gi|392692534|gb|EIY85771.1| DNA polymerase I [Bacteroides xylanisolvens CL03T12C04]
          Length = 960

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 156/307 (50%), Gaps = 33/307 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+       +  + E   +  L+  +I  LPL    ++ + GRVH S N   
Sbjct: 639  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLL---INPRTGRVHTSFNQTV 695

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M
Sbjct: 696  TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 755

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +  D H+ TA  +Y      ++                  LKD  +  RRKAK  
Sbjct: 756  IDAFLSNHDIHAATAAKIY-----KID------------------LKDVGSDMRRKAKTA 792

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++     V  + +   + ++   +V T+  
Sbjct: 793  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFH 852

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + +  K++LQV
Sbjct: 853  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQV 912

Query: 1072 LFFFSFS 1078
                +FS
Sbjct: 913  HDELNFS 919



 Score = 40.4 bits (93), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 26/43 (60%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++NEF P FE+ +  KV  N  +D  VL+NYG  V G   DTM
Sbjct: 433 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGAVVKGPLFDTM 475


>gi|257878419|ref|ZP_05658072.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257889382|ref|ZP_05669035.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257894395|ref|ZP_05674048.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260560008|ref|ZP_05832186.1| DNA polymerase A [Enterococcus faecium C68]
 gi|293559954|ref|ZP_06676462.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|314937782|ref|ZP_07845099.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
 gi|314941672|ref|ZP_07848552.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|314950962|ref|ZP_07854029.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|314992964|ref|ZP_07858360.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|314996411|ref|ZP_07861454.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|383328868|ref|YP_005354752.1| DNA polymerase I [Enterococcus faecium Aus0004]
 gi|424792399|ref|ZP_18218636.1| DNA-directed DNA polymerase [Enterococcus faecium V689]
 gi|424834914|ref|ZP_18259599.1| DNA-directed DNA polymerase [Enterococcus faecium R501]
 gi|424869096|ref|ZP_18292819.1| DNA-directed DNA polymerase [Enterococcus faecium R497]
 gi|424953549|ref|ZP_18368501.1| DNA-directed DNA polymerase [Enterococcus faecium R494]
 gi|424963163|ref|ZP_18377427.1| DNA-directed DNA polymerase [Enterococcus faecium P1190]
 gi|424970235|ref|ZP_18383762.1| DNA-directed DNA polymerase [Enterococcus faecium P1139]
 gi|424973188|ref|ZP_18386477.1| DNA-directed DNA polymerase [Enterococcus faecium P1137]
 gi|424977744|ref|ZP_18390730.1| DNA-directed DNA polymerase [Enterococcus faecium P1123]
 gi|424980149|ref|ZP_18392963.1| DNA-directed DNA polymerase [Enterococcus faecium ERV99]
 gi|424985184|ref|ZP_18397676.1| DNA-directed DNA polymerase [Enterococcus faecium ERV69]
 gi|424987169|ref|ZP_18399558.1| DNA-directed DNA polymerase [Enterococcus faecium ERV38]
 gi|424990264|ref|ZP_18402481.1| DNA-directed DNA polymerase [Enterococcus faecium ERV26]
 gi|424995068|ref|ZP_18406966.1| DNA-directed DNA polymerase [Enterococcus faecium ERV168]
 gi|425006563|ref|ZP_18417735.1| DNA-directed DNA polymerase [Enterococcus faecium ERV1]
 gi|425015070|ref|ZP_18425711.1| DNA-directed DNA polymerase [Enterococcus faecium E417]
 gi|425019802|ref|ZP_18430142.1| DNA-directed DNA polymerase [Enterococcus faecium C497]
 gi|425027912|ref|ZP_18435164.1| DNA-directed DNA polymerase [Enterococcus faecium C1904]
 gi|425034752|ref|ZP_18439619.1| DNA-directed DNA polymerase [Enterococcus faecium 514]
 gi|425038455|ref|ZP_18443071.1| DNA-directed DNA polymerase [Enterococcus faecium 513]
 gi|425045985|ref|ZP_18450041.1| DNA-directed DNA polymerase [Enterococcus faecium 510]
 gi|425050292|ref|ZP_18454054.1| DNA-directed DNA polymerase [Enterococcus faecium 509]
 gi|425051333|ref|ZP_18455002.1| DNA-directed DNA polymerase [Enterococcus faecium 506]
 gi|425060976|ref|ZP_18464242.1| DNA-directed DNA polymerase [Enterococcus faecium 503]
 gi|430830710|ref|ZP_19448766.1| DNA polymerase I [Enterococcus faecium E0333]
 gi|430846043|ref|ZP_19463908.1| DNA polymerase I [Enterococcus faecium E1133]
 gi|431541897|ref|ZP_19518126.1| DNA polymerase I [Enterococcus faecium E1731]
 gi|431750122|ref|ZP_19538849.1| DNA polymerase I [Enterococcus faecium E2297]
 gi|431754813|ref|ZP_19543473.1| DNA polymerase I [Enterococcus faecium E2883]
 gi|431770810|ref|ZP_19559207.1| DNA polymerase I [Enterococcus faecium E1644]
 gi|431778779|ref|ZP_19566985.1| DNA polymerase I [Enterococcus faecium E4389]
 gi|431781905|ref|ZP_19570045.1| DNA polymerase I [Enterococcus faecium E6012]
 gi|257812647|gb|EEV41405.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257825742|gb|EEV52368.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257830774|gb|EEV57381.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260073843|gb|EEW62167.1| DNA polymerase A [Enterococcus faecium C68]
 gi|291606042|gb|EFF35468.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|313589393|gb|EFR68238.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|313592487|gb|EFR71332.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|313596817|gb|EFR75662.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|313599563|gb|EFR78406.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|313642813|gb|EFS07393.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
 gi|378938562|gb|AFC63634.1| DNA polymerase I [Enterococcus faecium Aus0004]
 gi|402917678|gb|EJX38432.1| DNA-directed DNA polymerase [Enterococcus faecium V689]
 gi|402921849|gb|EJX42268.1| DNA-directed DNA polymerase [Enterococcus faecium R501]
 gi|402936151|gb|EJX55349.1| DNA-directed DNA polymerase [Enterococcus faecium R497]
 gi|402938754|gb|EJX57735.1| DNA-directed DNA polymerase [Enterococcus faecium R494]
 gi|402950165|gb|EJX68177.1| DNA-directed DNA polymerase [Enterococcus faecium P1190]
 gi|402959227|gb|EJX76501.1| DNA-directed DNA polymerase [Enterococcus faecium P1137]
 gi|402962326|gb|EJX79279.1| DNA-directed DNA polymerase [Enterococcus faecium P1139]
 gi|402964613|gb|EJX81383.1| DNA-directed DNA polymerase [Enterococcus faecium P1123]
 gi|402966602|gb|EJX83222.1| DNA-directed DNA polymerase [Enterococcus faecium ERV69]
 gi|402967250|gb|EJX83822.1| DNA-directed DNA polymerase [Enterococcus faecium ERV99]
 gi|402974989|gb|EJX90981.1| DNA-directed DNA polymerase [Enterococcus faecium ERV38]
 gi|402978281|gb|EJX94036.1| DNA-directed DNA polymerase [Enterococcus faecium ERV168]
 gi|402979840|gb|EJX95487.1| DNA-directed DNA polymerase [Enterococcus faecium ERV26]
 gi|402996847|gb|EJY11208.1| DNA-directed DNA polymerase [Enterococcus faecium E417]
 gi|402997095|gb|EJY11445.1| DNA-directed DNA polymerase [Enterococcus faecium ERV1]
 gi|403004984|gb|EJY18735.1| DNA-directed DNA polymerase [Enterococcus faecium C1904]
 gi|403010747|gb|EJY24098.1| DNA-directed DNA polymerase [Enterococcus faecium C497]
 gi|403019435|gb|EJY32038.1| DNA-directed DNA polymerase [Enterococcus faecium 514]
 gi|403019560|gb|EJY32156.1| DNA-directed DNA polymerase [Enterococcus faecium 513]
 gi|403024238|gb|EJY36412.1| DNA-directed DNA polymerase [Enterococcus faecium 509]
 gi|403025870|gb|EJY37914.1| DNA-directed DNA polymerase [Enterococcus faecium 510]
 gi|403037855|gb|EJY49106.1| DNA-directed DNA polymerase [Enterococcus faecium 506]
 gi|403042084|gb|EJY53059.1| DNA-directed DNA polymerase [Enterococcus faecium 503]
 gi|430482299|gb|ELA59417.1| DNA polymerase I [Enterococcus faecium E0333]
 gi|430539863|gb|ELA80102.1| DNA polymerase I [Enterococcus faecium E1133]
 gi|430592944|gb|ELB30931.1| DNA polymerase I [Enterococcus faecium E1731]
 gi|430610595|gb|ELB47739.1| DNA polymerase I [Enterococcus faecium E2297]
 gi|430618641|gb|ELB55482.1| DNA polymerase I [Enterococcus faecium E2883]
 gi|430634701|gb|ELB70815.1| DNA polymerase I [Enterococcus faecium E1644]
 gi|430643440|gb|ELB79179.1| DNA polymerase I [Enterococcus faecium E4389]
 gi|430648306|gb|ELB83713.1| DNA polymerase I [Enterococcus faecium E6012]
          Length = 881

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|431294039|ref|ZP_19506913.1| DNA polymerase I [Enterococcus faecium E1626]
 gi|430581632|gb|ELB20071.1| DNA polymerase I [Enterococcus faecium E1626]
          Length = 881

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|425071066|ref|ZP_18474172.1| DNA polymerase I [Proteus mirabilis WGLW4]
 gi|404599891|gb|EKB00344.1| DNA polymerase I [Proteus mirabilis WGLW4]
          Length = 949

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/246 (38%), Positives = 134/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K  RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 664  LPLM---VNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIARDGFK 720

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                  
Sbjct: 721  IVAADYSQIELRIMAHLSQDKGLLDAFAQGKDIHRATASEVF------------------ 762

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 +P L +  A +RR AK +NF + YG +  GL++   V  +EA++ +DL++     
Sbjct: 763  ----GIP-LDEVTAEQRRSAKAINFGLIYGMSAFGLSQQIGVERKEAQRYMDLYFERYPG 817

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S    +R   ER AIN P+QG+AAD+  
Sbjct: 818  VLDYMERTRKQASQQGYVETLDGRRLYLPEINSKNAIRRKASEREAINAPMQGTAADIIK 877

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 878  KAMIAV 883



 Score = 45.1 bits (105), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 108/252 (42%), Gaps = 65/252 (25%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           ++L    P  ED +I K+  N  FD  ++EN G++++G + DTM  + + +S       +
Sbjct: 420 EVLTALKPILEDKTILKIGQNLKFDRGIMENEGIELNGIYFDTMLESYVLNS---VSSRH 476

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
            ++ L    K ++     +++   KG       G+++   I                   
Sbjct: 477 DMDTLA--EKHLNHKTTTFEEIAGKGK------GQLTFNQI------------------- 509

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
                   E E    Y+A D+  TL L+++L  ++  ++        P K +   Y +  
Sbjct: 510 --------EVEQATLYAAEDADITLLLHQALYPQIEAIA--------PLKHV---YHDIE 550

Query: 603 QPFGEILVKMETEGMLVDREYLS----EI-EKVARAEQEAAVNRFRKWASKHCPDAKYMN 657
            P   +L +ME +G+L+D + L+    EI +++A  E+E      +++           N
Sbjct: 551 MPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKETFALAGQEF-----------N 599

Query: 658 VGSDTQLRQLLF 669
           + S  QL+++LF
Sbjct: 600 LSSPKQLQEILF 611


>gi|418966121|ref|ZP_13517870.1| DNA-directed DNA polymerase [Streptococcus constellatus subsp.
            constellatus SK53]
 gi|383340775|gb|EID19063.1| DNA-directed DNA polymerase [Streptococcus constellatus subsp.
            constellatus SK53]
          Length = 835

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +GR+H   L   T+TGRLS
Sbjct: 516  AVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGRIHTRYLQDLTQTGRLS 575

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + +++AF+
Sbjct: 576  SVDPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDEHLIEAFR 634

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 635  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 672

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 673  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRREI 732

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +    +    ++LLQV
Sbjct: 733  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALTDRNFKTRMLLQV 787


>gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2]
 gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2]
          Length = 893

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/286 (36%), Positives = 155/286 (54%), Gaps = 30/286 (10%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQN 846
            + I  + E   I  L S +I  LP     V+ K GR+H S N   T TGRLS+  PNLQN
Sbjct: 589  EIIPLILEYRKIQKLKSTYIDALP---KMVNPKTGRIHASFNQTGTATGRLSSSDPNLQN 645

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
             P   ++  +IR+A +    N  IV ADY Q+ELRILAHL+  +++L AF+ G D H+ T
Sbjct: 646  LPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEEGIDVHTLT 705

Query: 906  AMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            A  ++      V+  +V  E                   RR  KM+NFSI YG TP GL+
Sbjct: 706  ASRIF-----NVKPEEVTEEM------------------RRAGKMVNFSIIYGVTPYGLS 742

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
                V V+EA+K +  ++    +V  + +    E++   +V TL GR R  P + +  R+
Sbjct: 743  VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRN 802

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             +   ER AINTP+QG+AAD+   AM+EI +  + +++  K+++QV
Sbjct: 803  TQAEGERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQV 848



 Score = 48.5 bits (114), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 104/259 (40%), Gaps = 59/259 (22%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           +++L +     EDP  K V  N  FD  VL   G++    H DTM  A L + +   E  
Sbjct: 364 KEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPHFDTMIAAYLLEPN---EKK 420

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
           ++L+ L    K +     +YQ+ MS  +   GF    S  D+                  
Sbjct: 421 FNLDDLA--LKFLGYKMTSYQELMSFSSPLFGF----SFADV------------------ 456

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
            PVE+          +YS  D+  T +LYK L  KL E   +            + + + 
Sbjct: 457 -PVEKAA--------NYSCEDADITYRLYKILSLKLHEADLE------------NVFYKI 495

Query: 602 WQPFGEILVKMETEGMLVDREYLSEI-EKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
             P   +L +ME  G+ VD E+L ++ E+  +  +E A   +R             N+ S
Sbjct: 496 EMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEP-------FNINS 548

Query: 661 DTQLRQLLF---GGKPNSK 676
             Q+ ++LF   G KP  K
Sbjct: 549 PKQVSRILFEKLGIKPRGK 567


>gi|69246664|ref|ZP_00604054.1| DNA polymerase A [Enterococcus faecium DO]
 gi|68195138|gb|EAN09596.1| DNA polymerase A [Enterococcus faecium DO]
          Length = 868

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 549  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 608

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 609  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 668

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 669  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 706

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 707  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 766

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 767  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 820


>gi|449109294|ref|ZP_21745930.1| DNA polymerase I [Treponema denticola ATCC 33520]
 gi|448959102|gb|EMB39824.1| DNA polymerase I [Treponema denticola ATCC 33520]
          Length = 943

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 140/256 (54%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 663  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 722

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 723  QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF-----AVD----------------- 760

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             + D     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 761  -INDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAN 819

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V TL+GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 820  VCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 879

Query: 1056 KNARLKELGWKLLLQV 1071
            K  + ++L   +LLQV
Sbjct: 880  KALKKQKLDASILLQV 895


>gi|314948920|ref|ZP_07852289.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
 gi|313644710|gb|EFS09290.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
          Length = 881

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
 gi|345510829|ref|ZP_08790389.1| hypothetical protein BSAG_04973 [Bacteroides sp. D1]
 gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
 gi|345454316|gb|EGX26147.1| hypothetical protein BSAG_04973 [Bacteroides sp. D1]
          Length = 949

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 156/307 (50%), Gaps = 33/307 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+       +  + E   +  L+  +I  LPL    ++ + GRVH S N   
Sbjct: 628  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLL---INPRTGRVHTSFNQTV 684

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M
Sbjct: 685  TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +  D H+ TA  +Y      ++                  LKD  +  RRKAK  
Sbjct: 745  IDAFLSNHDIHAATAAKIY-----KID------------------LKDVDSDMRRKAKTA 781

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++     V  + +   + ++   +V T+  
Sbjct: 782  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFH 841

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + +  K++LQV
Sbjct: 842  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQV 901

Query: 1072 LFFFSFS 1078
                +FS
Sbjct: 902  HDELNFS 908


>gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22]
 gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A]
 gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22]
          Length = 949

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 156/307 (50%), Gaps = 33/307 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+       +  + E   +  L+  +I  LPL    ++ + GRVH S N   
Sbjct: 628  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLL---INPRTGRVHTSFNQTV 684

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M
Sbjct: 685  TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +  D H+ TA  +Y      ++                  LKD  +  RRKAK  
Sbjct: 745  IDAFLSNHDIHAATAAKIY-----KID------------------LKDVDSDMRRKAKTA 781

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++     V  + +   + ++   +V T+  
Sbjct: 782  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFH 841

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + +  K++LQV
Sbjct: 842  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQV 901

Query: 1072 LFFFSFS 1078
                +FS
Sbjct: 902  HDELNFS 908


>gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
 gi|418045679|ref|ZP_12683774.1| DNA polymerase I [Thermotoga maritima MSB8]
 gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
 gi|351676564|gb|EHA59717.1| DNA polymerase I [Thermotoga maritima MSB8]
          Length = 893

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/286 (36%), Positives = 155/286 (54%), Gaps = 30/286 (10%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQN 846
            + I  + E   I  L S +I  LP     V+ K GR+H S N   T TGRLS+  PNLQN
Sbjct: 589  EIIPLILEYRKIQKLKSTYIDALP---KMVNPKTGRIHASFNQTGTATGRLSSSDPNLQN 645

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
             P   ++  +IR+A +    N  IV ADY Q+ELRILAHL+  +++L AF+ G D H+ T
Sbjct: 646  LPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLT 705

Query: 906  AMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            A  ++      V+  +V  E                   RR  KM+NFSI YG TP GL+
Sbjct: 706  ASRIF-----NVKPEEVTEEM------------------RRAGKMVNFSIIYGVTPYGLS 742

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
                V V+EA+K +  ++    +V  + +    E++   +V TL GR R  P + +  R+
Sbjct: 743  VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRN 802

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             +   ER AINTP+QG+AAD+   AM+EI +  + +++  K+++QV
Sbjct: 803  TQAEGERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQV 848


>gi|430844042|ref|ZP_19461940.1| DNA polymerase I [Enterococcus faecium E1050]
 gi|430496632|gb|ELA72691.1| DNA polymerase I [Enterococcus faecium E1050]
          Length = 881

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|227551619|ref|ZP_03981668.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257887242|ref|ZP_05666895.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257895778|ref|ZP_05675431.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|293377607|ref|ZP_06623796.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
 gi|431032969|ref|ZP_19490815.1| DNA polymerase I [Enterococcus faecium E1590]
 gi|431737600|ref|ZP_19526553.1| DNA polymerase I [Enterococcus faecium E1972]
 gi|431751985|ref|ZP_19540671.1| DNA polymerase I [Enterococcus faecium E2620]
 gi|227179296|gb|EEI60268.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257823296|gb|EEV50228.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257832343|gb|EEV58764.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|292643607|gb|EFF61728.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
 gi|430564070|gb|ELB03254.1| DNA polymerase I [Enterococcus faecium E1590]
 gi|430598687|gb|ELB36422.1| DNA polymerase I [Enterococcus faecium E1972]
 gi|430614594|gb|ELB51574.1| DNA polymerase I [Enterococcus faecium E2620]
          Length = 881

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|449119979|ref|ZP_21756366.1| DNA polymerase I [Treponema denticola H1-T]
 gi|449122376|ref|ZP_21758716.1| DNA polymerase I [Treponema denticola MYR-T]
 gi|448948132|gb|EMB28970.1| DNA polymerase I [Treponema denticola MYR-T]
 gi|448948599|gb|EMB29433.1| DNA polymerase I [Treponema denticola H1-T]
          Length = 944

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 140/256 (54%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ KNGR+H S +   T TGRLS+R PNLQN P    +  KIR+AF A  G  LI ADY 
Sbjct: 664  MTDKNGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYS 723

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL ILAHL+  +++++AF  G D H++TA  ++     AV+                 
Sbjct: 724  QIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIF-----AVD----------------- 761

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             + D     RR AK +NF + YG +   LA   ++  + A + +  ++     V  +   
Sbjct: 762  -INDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAN 820

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    +V TL+GR R  PAI S  + ++   ER A+NTP+QG+AAD+   AMLE+ 
Sbjct: 821  ICQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVD 880

Query: 1056 KNARLKELGWKLLLQV 1071
            K  + ++L   +LLQV
Sbjct: 881  KALKKQKLDASILLQV 896


>gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
          Length = 845

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 161/304 (52%), Gaps = 29/304 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            KGA +++N +    +  R   D +  + +  +++ L S ++ PL      G  GR+H + 
Sbjct: 521  KGAYSTSNVVL---ESMRRDHDIVDLILQYRTLEKLRSTYLEPLPRKVDVG--GRLHTTF 575

Query: 829  N-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N + T TGRLS+  PNLQN P   +   ++R  F    G  L+ ADY Q+ELRILAH++ 
Sbjct: 576  NQLATATGRLSSSNPNLQNIPIKGEFGPRMRACFKPSKGKLLVAADYSQIELRILAHMSM 635

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
              ++L AF    D H RTA  ++                   DK     +++    ERRK
Sbjct: 636  DPNLLQAFGGNEDIHRRTAGLLF-------------------DKD----IQEVSQDERRK 672

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF + YG  P  L+R+  +S+EEAK+ + +++++   V  + +  +++++   +V 
Sbjct: 673  AKTINFGLLYGMGPQKLSRELSISMEEAKEFISVYFSKLDRVRDFYQQIEEKAQEQGYVT 732

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+ GR R  P I S   +      R A+NT +QGSAADV   AML +  ++ L+ LG  +
Sbjct: 733  TMAGRRRLLPDINSRNTNMAQQARRTAVNTVIQGSAADVIKKAMLAVDSDSELRSLGSVM 792

Query: 1068 LLQV 1071
            +LQV
Sbjct: 793  VLQV 796


>gi|340350278|ref|ZP_08673274.1| DNA-directed DNA polymerase I [Prevotella nigrescens ATCC 33563]
 gi|339608807|gb|EGQ13691.1| DNA-directed DNA polymerase I [Prevotella nigrescens ATCC 33563]
          Length = 942

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/290 (34%), Positives = 149/290 (51%), Gaps = 25/290 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            +  + E   I  L+S +I  L    +  + G +H S N   T TGRLS+  PNLQN P  
Sbjct: 638  VHKILEYRGIKKLLSTYIDALPKL-IKPETGHIHTSFNQALTATGRLSSSDPNLQNIPVR 696

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
              D  +IR+ FI   G     ADY Q+ELRI+AHL+  ++M++AF+ G D H  TA  + 
Sbjct: 697  TDDGKEIRKCFIPESGCEFFSADYSQIELRIMAHLSEDENMMEAFRKGFDIHRATAAKI- 755

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                           WH ED      +++   ++R+KAK  NF I YG T  GLA+   +
Sbjct: 756  ---------------WH-ED------MENVTDTQRKKAKQANFGIIYGITTYGLAQRMDI 793

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
               EAK+ +D ++N   +V  + E  K+E+R   +  T+  R R    I S   + R   
Sbjct: 794  PNGEAKELIDGYFNTFPKVKAYMERAKEEARKKGYAETIFHRRRYLADINSRNATVRGFA 853

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSFF 1080
            ER AIN P+QGS AD+   AM+ I +  + + +  K++LQV    +FS F
Sbjct: 854  ERNAINAPIQGSEADIIKVAMVRIWQRFKRENIRSKMILQVHDELNFSVF 903



 Score = 43.9 bits (102), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 87/250 (34%), Gaps = 61/250 (24%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           ++N F P +ED SI K+  N  +D  VL  YG+ + G   DTM    L     R    Y 
Sbjct: 414 IVNIFKPLYEDESILKIGQNIKYDYEVLHKYGVTLKGKLFDTMIAHYLIQPELRHNMDYM 473

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
            E L   + +  E         +KG   +  M  +   +I+                   
Sbjct: 474 AETLLNYKTIPIESLIG-----AKGKQQQKNMRDLQPSEIY------------------- 509

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW- 602
                         Y+  D+  TL+L   L+ KL         K V  +++F      W 
Sbjct: 510 -------------EYACEDADITLQLKHVLEPKL---------KEVEAENLF------WN 541

Query: 603 --QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
              P   +L  ME  G+ +D   L E  ++             + A +        N+ S
Sbjct: 542 IEMPLVPVLADMELHGVRLDTAALEETSRIFTQRMNQYEQEIYELAGES------FNISS 595

Query: 661 DTQLRQLLFG 670
             Q+ ++LFG
Sbjct: 596 PKQVGEMLFG 605


>gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 933

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 160/308 (51%), Gaps = 36/308 (11%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCS 827
            GA ++N ++ A   E  +  +  + + E   +  L S +   LP     ++   GRVH S
Sbjct: 608  GAPSTNEEVLAELSE--QGFELPTIILEHRGLAKLKSTYTDKLP---QMINPATGRVHTS 662

Query: 828  LN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLA 886
             +   T TGRLS+  PNLQN P    +  +IRQAFIA  G  ++ ADY Q+ELRI+AHL+
Sbjct: 663  YHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYKIVAADYSQIELRIMAHLS 722

Query: 887  NCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERR 946
              K +L AF AG D H  TA  ++                          L+D  + +RR
Sbjct: 723  GDKGLLTAFAAGKDIHRATAAEVFGLK-----------------------LEDVTSEQRR 759

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
             AK +NF + YG +  GLAR   ++  EA++ +DL++     VL + E  ++++    +V
Sbjct: 760  SAKAINFGLIYGMSAFGLARQLNIARGEAQRYMDLYFERYPGVLEYMERTRQQAAEQGYV 819

Query: 1007 HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL---KEL 1063
             TL GR    P I S    +R   ERAAIN P+QG+AAD+   AM  IS +A L   KE 
Sbjct: 820  ETLDGRRLYLPEIHSRNGMRRKGAERAAINAPMQGTAADIIKRAM--ISVDAWLLQQKEP 877

Query: 1064 GWKLLLQV 1071
              ++++QV
Sbjct: 878  LVRMIMQV 885


>gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b]
 gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b]
          Length = 928

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 99/259 (38%), Positives = 135/259 (52%), Gaps = 35/259 (13%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + V+G   RVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA P   
Sbjct: 643  LPLMINPVTG---RVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAGPDKR 699

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF  G D H  TA  ++         G  L +  G
Sbjct: 700  IVAADYSQIELRIMAHLSQDKGLLAAFAQGEDIHRATASEVF---------GVALSKVSG 750

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 751  E--------------QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 796

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++    +V TL GR    P I S    +R   ERAAIN P+QG+AAD+  
Sbjct: 797  VLRYMEETREQAAAKGYVETLDGRRLWLPDITSSNAIRRKAAERAAINAPMQGTAADIIK 856

Query: 1049 CAMLEISKNARLKELGWKL 1067
             AM+ +         GW L
Sbjct: 857  RAMIAVD--------GWLL 867


>gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1]
 gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1]
          Length = 893

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/286 (36%), Positives = 155/286 (54%), Gaps = 30/286 (10%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQN 846
            + I  + E   I  L S +I  LP     V+ K GR+H S N   T TGRLS+  PNLQN
Sbjct: 589  EIIPLILEYRKIQKLKSTYIDALP---KMVNPKTGRIHASFNQTGTATGRLSSSDPNLQN 645

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
             P   ++  +IR+A +    N  IV ADY Q+ELRILAHL+  +++L AF+ G D H+ T
Sbjct: 646  LPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLT 705

Query: 906  AMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            A  ++      V+  +V  E                   RR  KM+NFSI YG TP GL+
Sbjct: 706  ASRIF-----NVKPEEVTEEM------------------RRAGKMVNFSIIYGVTPYGLS 742

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
                V V+EA+K +  ++    +V  + +    E++   +V TL GR R  P + +  R+
Sbjct: 743  VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRN 802

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             +   ER AINTP+QG+AAD+   AM+EI +  + +++  K+++QV
Sbjct: 803  TQAEGERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQV 848


>gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614]
 gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614]
          Length = 996

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 168/344 (48%), Gaps = 29/344 (8%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
            GA +++ ++   E  A E  +  S +     +  L S +   L G  ++ + GRVH S  
Sbjct: 668  GAWSTSAQVL--EDLAAEGHELPSRIVSWRQLSKLKSTYTDALPGY-INPETGRVHTSYA 724

Query: 830  IN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
            +  T TGRLS+  PNLQN P   ++  KIR+AFIA  G+ LI ADY Q+ELR+LAH+A+ 
Sbjct: 725  LAATTTGRLSSSEPNLQNIPVRTEEGRKIRKAFIAEKGHKLISADYSQIELRVLAHMADI 784

Query: 889  KSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKA 948
              +  AF  G D H+ TA  M+      +E         G D    P++       RR+A
Sbjct: 785  PQLKKAFDDGLDIHAMTASEMF---GTPIE---------GMD----PMV-------RRRA 821

Query: 949  KMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHT 1008
            K +NF I YG +  GLA    +S  EA   +  ++     +  + EA KK+   + +V T
Sbjct: 822  KAINFGIIYGISAFGLANQLGISRGEAGDYIKTYFERFPGIKDYMEAIKKQVHANGYVTT 881

Query: 1009 LLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLL 1068
            + GR   +P + +   + R   ERAAIN P+QGSAAD+   AM+ +       +L  ++L
Sbjct: 882  IFGRKAHYPEVNTKNPNMRAFYERAAINAPIQGSAADILRRAMVRMENRLEGSKLDAQML 941

Query: 1069 LQVL--FFFSFSFFSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
            LQV     F      +   +     V+ NA  P    S  L  D
Sbjct: 942  LQVHDELIFEVPDAQVETTIPVIKDVMENACDPALKLSVPLQVD 985



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 105/257 (40%), Gaps = 59/257 (22%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           +D L+   P  ED S+ K+  N  +D  V+  YG+ ++ F  DTM ++   D+ +   GG
Sbjct: 464 KDALDVLKPMLEDRSVLKIAQNLKYDWLVMTRYGIDITPFD-DTMLLSYTVDAGK---GG 519

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
             ++ L+ +R +   D K                  I  K+I G  K          S I
Sbjct: 520 NGMDELS-ERWL---DHK-----------------PIPFKEICGSGK----------SMI 548

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
                  +   +   +Y+A D+  TL+L+  LK +L              + M   Y+  
Sbjct: 549 T----FDKVAIDKATAYAAEDADVTLRLWLILKPRLAS------------ERMATVYETL 592

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            +P   +L +ME  G+ VDR+ LS      R   E A     K +  +    +  N+GS 
Sbjct: 593 ERPMVPVLARMEKRGISVDRQMLS------RLSGEFAQGMAGKESEIYELAGENFNIGSP 646

Query: 662 TQLRQLLFG--GKPNSK 676
            QL  +LFG  G P  K
Sbjct: 647 KQLGDILFGKMGLPGGK 663


>gi|431762027|ref|ZP_19550589.1| DNA polymerase I [Enterococcus faecium E3548]
 gi|430624719|gb|ELB61369.1| DNA polymerase I [Enterococcus faecium E3548]
          Length = 881

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVAP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|425056059|ref|ZP_18459519.1| DNA-directed DNA polymerase [Enterococcus faecium 505]
 gi|403032458|gb|EJY44012.1| DNA-directed DNA polymerase [Enterococcus faecium 505]
          Length = 881

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|322434369|ref|YP_004216581.1| DNA polymerase I [Granulicella tundricola MP5ACTX9]
 gi|321162096|gb|ADW67801.1| DNA polymerase I [Granulicella tundricola MP5ACTX9]
          Length = 975

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 138/260 (53%), Gaps = 24/260 (9%)

Query: 813  QGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV 871
            Q  ++S + GR+H + N + T TGRLS+  PNLQN P       +IR AFIA PGN L+ 
Sbjct: 691  QLPSLSDREGRIHTTFNQVGTATGRLSSTNPNLQNIPTRTAIGREIRAAFIAAPGNLLMS 750

Query: 872  ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDK 931
            ADY Q+ELR++AH +    +L+A++ G D H+ TA  ++             ++    DK
Sbjct: 751  ADYSQIELRLMAHFSQDPLLLNAYRTGQDIHTLTAAEVFG------------VDAETMDK 798

Query: 932  PPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLT 991
                         R +AK +NF I YG +P GLA    +  + A+  ++ +Y+  + +  
Sbjct: 799  -----------ETRARAKAVNFGIVYGISPFGLAAQLGIDQKVARTYIETYYDRYKGIKR 847

Query: 992  WQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAM 1051
            + +   +  R+   V T  GR R  P I+S   + R   ER AINTP+QG+AAD+   AM
Sbjct: 848  FIDETLETVRLAGAVSTHFGRVRPIPDIQSRNPNMRGFAERTAINTPLQGTAADLIKLAM 907

Query: 1052 LEISKNARLKELGWKLLLQV 1071
            + + +  R + L  ++ LQV
Sbjct: 908  ISLDREIRARGLKSRMTLQV 927


>gi|386394626|ref|ZP_10079407.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase
            domains [Desulfovibrio sp. U5L]
 gi|385735504|gb|EIG55702.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase
            domains [Desulfovibrio sp. U5L]
          Length = 893

 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 149/297 (50%), Gaps = 30/297 (10%)

Query: 780  ATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T QEA E        +  + E   ++ L S ++ PL    ++   GR+H + N + T T
Sbjct: 574  STSQEALERLAGENPLVDRILEFRKLEKLRSTYLDPL--PRLADAAGRIHTTFNNLATAT 631

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       ++R+ F+A PG  L+ ADY Q+ELR+LAHL+   ++L A
Sbjct: 632  GRLSSSNPNLQNIPIRGTLGRRMRECFVAAPGKKLVAADYSQIELRVLAHLSGEPALLAA 691

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+RTA  ++                   DK    +  D    ERR+AK +NF 
Sbjct: 692  FEQGADIHARTAAILF-------------------DKAEADIRPD----ERRQAKTINFG 728

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG  P  L+RD  + ++ AK  ++ ++     + T+ +     ++    V TL GR R
Sbjct: 729  LLYGMGPQKLSRDLGIKLDAAKAFIEKYFERLSGLSTFYQGIVDTAKEQGFVTTLAGRRR 788

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              P I S      +   R AINT VQG AAD+   AML    +  L  LG  ++LQV
Sbjct: 789  LLPEIHSANSQLASQARRQAINTVVQGGAADIIKMAMLAAHGDPELAGLGAAMVLQV 845


>gi|418020806|ref|ZP_12660008.1| DNA polymerase I [Candidatus Regiella insecticola R5.15]
 gi|347603842|gb|EGY28605.1| DNA polymerase I [Candidatus Regiella insecticola R5.15]
          Length = 937

 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 92/241 (38%), Positives = 132/241 (54%), Gaps = 24/241 (9%)

Query: 815  SNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S ++  +GRVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA P   +I AD
Sbjct: 638  SMINPTSGRVHTSYHQAVTVTGRLSSREPNLQNIPIRSEEGRRIRQAFIAPPDYQIITAD 697

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELRI+AHL+    ++ AF A  D H  TA  ++                       
Sbjct: 698  YSQIELRIMAHLSQDNGLIKAFTADKDIHRATAAEVFN---------------------- 735

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
            VPL + A   +RR AK +NF + YG +  GLAR   ++  EA+  +D ++     V  + 
Sbjct: 736  VPL-ETATDEQRRSAKAINFGLIYGMSAFGLARQLGIARVEAQHYIDRYFERYPGVANYM 794

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            EA +K++    +V TL GR    P I + + ++R   ER AIN P+QG+AAD+   AM+E
Sbjct: 795  EAIRKQAATQGYVTTLAGRRLYLPDINASSATRRKAAEREAINAPMQGTAADIIKSAMIE 854

Query: 1054 I 1054
            I
Sbjct: 855  I 855


>gi|332799559|ref|YP_004461058.1| DNA polymerase I [Tepidanaerobacter acetatoxydans Re1]
 gi|332697294|gb|AEE91751.1| DNA polymerase I [Tepidanaerobacter acetatoxydans Re1]
          Length = 864

 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/260 (36%), Positives = 138/260 (53%), Gaps = 31/260 (11%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADY 874
            V  K GR++ S N   T TGR+S+  PNLQN P   ++   IR  F +  PG+ L+  DY
Sbjct: 584  VDKKTGRIYTSFNQTVTSTGRISSTEPNLQNIPVKTEEGKHIRGVFTSDGPGHVLLSGDY 643

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP- 933
             Q+ELR+LAH++    +++AF +G D H RTA  ++                     PP 
Sbjct: 644  SQIELRVLAHMSQDPGLIEAFVSGEDIHRRTASEVF-------------------GVPPE 684

Query: 934  --VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLT 991
               PLL+D       KAK +NF I YG +  GLA++  +S +EAK+ +D ++     V  
Sbjct: 685  EVTPLLRD-------KAKAVNFGIIYGISDYGLAQNLGISNQEAKEYIDAYFARYPGVRD 737

Query: 992  WQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAM 1051
            +     + ++   +V TLL R R  P I S     R+  ER A+NTP+QGSAAD+   AM
Sbjct: 738  YIRETIRSAKALGYVTTLLNRRRYIPDINSRNYHLRSFAERTAVNTPIQGSAADIIKIAM 797

Query: 1052 LEISKNARLKELGWKLLLQV 1071
            +++  N R   L  K+LLQV
Sbjct: 798  VKVHDNLRQNNLKAKILLQV 817


>gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10]
 gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10]
          Length = 878

 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/254 (35%), Positives = 143/254 (56%), Gaps = 25/254 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQL 877
            K G++H   N   T+TGRLS+  PNLQN P   ++  KIR+AF+ + PG+ L  ADY Q+
Sbjct: 600  KTGKIHTIFNQAVTQTGRLSSTEPNLQNIPVRLEEGRKIRRAFVPSKPGSKLFAADYSQI 659

Query: 878  ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLL 937
            ELR+LAH++  ++++ AF+ G D H++TA +++    N V                    
Sbjct: 660  ELRVLAHISKDENLISAFQEGMDIHTKTASDVFGVKGNEVT------------------- 700

Query: 938  KDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARK 997
                A  RR AK +NF I YG +  GL+++  +S ++A+  +D ++     V T+ E   
Sbjct: 701  ----AEMRRTAKAVNFGIVYGISDYGLSQNLGISRKKAQTFIDKYFESYPGVKTYMEDIV 756

Query: 998  KESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKN 1057
             E+R   +V T+L R R  P + S   +QR+  ER A+NTP+QGSAAD+   AM++++  
Sbjct: 757  AEAREQGYVTTMLQRRRYLPDLTSRNFNQRSFAERTAMNTPIQGSAADIIKKAMVDMATE 816

Query: 1058 ARLKELGWKLLLQV 1071
               + L   +LLQV
Sbjct: 817  LERQNLKSVMLLQV 830


>gi|431756801|ref|ZP_19545433.1| DNA polymerase I [Enterococcus faecium E3083]
 gi|430620655|gb|ELB57457.1| DNA polymerase I [Enterococcus faecium E3083]
          Length = 881

 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVGDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M]
 gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
          Length = 994

 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 710  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRILAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 807

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 808  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 865

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 866  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 925

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 926  EDALAKENLAARMLLQV 942



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660


>gi|425057932|ref|ZP_18461329.1| DNA-directed DNA polymerase [Enterococcus faecium 504]
 gi|403039507|gb|EJY50651.1| DNA-directed DNA polymerase [Enterococcus faecium 504]
          Length = 881

 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKNQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKEAGLQATMLLQV 833


>gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
 gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
          Length = 911

 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/256 (34%), Positives = 137/256 (53%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ + GR+H  L    T TGRLS++ PNLQN P  ++D  +IR AF+   GN  I ADY 
Sbjct: 631  VNPETGRIHTQLIQTGTATGRLSSKDPNLQNIPIRDEDGRRIRSAFVPAEGNLFISADYS 690

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+EL +LAHL+    +  AF++GGD H RTA  ++  +  A                   
Sbjct: 691  QIELVVLAHLSEDPELSQAFRSGGDVHRRTASLIF-DVSEA------------------- 730

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
               D  + +RR AK +NF + YG +   L+R+  +S   A   +  ++     + ++   
Sbjct: 731  ---DVSSEQRRIAKTINFGVMYGMSAFRLSRELGISRSRADSFISAYFRRYFRIQSFMRK 787

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+       TLLGR R  PAI S  ++++   ER A+NTP+QG+AAD+   AML +S
Sbjct: 788  VVQETEQSGVSKTLLGRERSIPAINSRNKTEKAGAERIAVNTPIQGTAADIVKLAMLAVS 847

Query: 1056 KNARLKELGWKLLLQV 1071
            +    +EL  K++LQ+
Sbjct: 848  RRMASEELKSKMVLQI 863


>gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320]
 gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320]
          Length = 932

 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/289 (35%), Positives = 150/289 (51%), Gaps = 32/289 (11%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++      + E    I    E   +  L S +   LPL    V+ K  RVH 
Sbjct: 607  KGAPSTNEEVLEALAHSHELPRLI---LEHRGLAKLKSTYTDKLPLM---VNSKTKRVHT 660

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 661  SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIARDGFKIVAADYSQIELRIMAHL 720

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +LDAF  G D H  TA  ++                       +P L +  + +R
Sbjct: 721  SQDKGLLDAFAQGKDIHRATASEVF----------------------GIP-LDEVTSEQR 757

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL++   V  +EA++ +DL++     VL + E  +K++    +
Sbjct: 758  RSAKAINFGLIYGMSAFGLSQQIGVERKEAQRYMDLYFERYPGVLDYMERTRKQASQQGY 817

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM+ +
Sbjct: 818  VETLDGRRLYLPEINSKNAIRRKASEREAINAPMQGTAADIIKKAMIAV 866



 Score = 45.4 bits (106), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 108/252 (42%), Gaps = 65/252 (25%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           ++L    P  ED +I K+  N  FD  ++EN G++++G + DTM  + + +S       +
Sbjct: 403 EVLTALKPILEDKTILKIGQNLKFDRGIMENEGIELNGIYFDTMLESYVLNS---VSSRH 459

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
            ++ L    K ++     +++   KG       G+++   I                   
Sbjct: 460 DMDTLA--EKHLNHKTTTFEEIAGKGK------GQLTFNQI------------------- 492

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
                   E E    Y+A D+  TL L+++L  ++  ++        P K +   Y +  
Sbjct: 493 --------EVEQATLYAAEDADITLLLHQALYPQIEAIA--------PLKHV---YHDIE 533

Query: 603 QPFGEILVKMETEGMLVDREYLS----EI-EKVARAEQEAAVNRFRKWASKHCPDAKYMN 657
            P   +L +ME +G+L+D + L+    EI +++A  E+E      +++           N
Sbjct: 534 MPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKETFALAGQEF-----------N 582

Query: 658 VGSDTQLRQLLF 669
           + S  QL+++LF
Sbjct: 583 LSSPKQLQEILF 594


>gi|430833099|ref|ZP_19451112.1| DNA polymerase I [Enterococcus faecium E0679]
 gi|430486554|gb|ELA63390.1| DNA polymerase I [Enterococcus faecium E0679]
          Length = 881

 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKEAGLQATMLLQV 833


>gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila]
          Length = 893

 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/286 (36%), Positives = 154/286 (53%), Gaps = 30/286 (10%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQN 846
            + I  + E   I  L S +I  LP     V+ K GR+H S N   T TGRLS+  PNLQN
Sbjct: 589  EIIPLILEYRKIQKLKSTYIDALP---KMVNPKTGRIHASFNQTGTATGRLSSSDPNLQN 645

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
             P   ++  +IR+A +    N  IV ADY Q+ELRILAHL+  +++L AF+ G D H+ T
Sbjct: 646  LPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEEGIDVHTLT 705

Query: 906  AMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            A  ++      V+  +V  E                   RR  KM+NFSI YG TP GL+
Sbjct: 706  ASRIF-----NVKPEEVTEEM------------------RRAGKMVNFSIIYGVTPYGLS 742

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
                V V+EA+K +  ++    +V  + +    E++   +V TL GR R  P + +  R+
Sbjct: 743  VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRRRDIPQLMARDRN 802

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             +   ER AINTP+QG+AAD+   AM+EI +  +  ++  K+++QV
Sbjct: 803  TQAEGERIAINTPIQGTAADIIKLAMIEIDRELKESKMKTKMIIQV 848



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 105/259 (40%), Gaps = 59/259 (22%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           +++L +     EDP  K V  N  FD  VL   G++    H DTM  A L + +   E  
Sbjct: 364 KEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPHFDTMIAAYLIEPN---EKK 420

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
           ++L+ L    K +     +YQ+ MS  +   GF    S  D+                  
Sbjct: 421 FNLDDLA--LKFLGYKMTSYQELMSFSSPLFGF----SFADV------------------ 456

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
            PVE+          +YS  D+  T +LYK+L  KL E   +            + + + 
Sbjct: 457 -PVEKAA--------NYSCEDADITYRLYKTLSLKLHEADLE------------NVFYKI 495

Query: 602 WQPFGEILVKMETEGMLVDREYLSEI-EKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
             P   +L +ME  G+ VD E+L ++ E+  +  +E A   +R             N+ S
Sbjct: 496 EMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEP-------FNINS 548

Query: 661 DTQLRQLLF---GGKPNSK 676
             Q+ ++LF   G KP  K
Sbjct: 549 PKQVSRILFEKLGIKPRGK 567


>gi|399543583|ref|YP_006556891.1| DNA polymerase I [Marinobacter sp. BSs20148]
 gi|399158915|gb|AFP29478.1| DNA polymerase I [Marinobacter sp. BSs20148]
          Length = 936

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 129/241 (53%), Gaps = 24/241 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +  + GRVH S +   T TGRLS+  PNLQN P   +   +IRQAF+A  G  L+ ADY 
Sbjct: 655  IHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRSEQGRRIRQAFVAEKGYKLLAADYS 714

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +L AF  G D H  TA  ++           V LE    D     
Sbjct: 715  QIELRIMAHLSEDKGLLTAFAKGEDIHKATAAEVF----------GVTLEEVNSD----- 759

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                    +RR AK +NF + YG +  GLAR   V  + A++ +D ++     VLT+ + 
Sbjct: 760  --------QRRSAKAINFGLIYGMSAFGLARQLDVERKVAQQYIDRYFERYPGVLTYMDK 811

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +K++  D +V TL GR    P I +  +  +   ER AIN P+QG+AAD+   AM+E+ 
Sbjct: 812  IRKQAHEDGYVETLFGRRLYLPEINTRNKQLQQAAERTAINAPMQGTAADIIKLAMIEVE 871

Query: 1056 K 1056
            +
Sbjct: 872  R 872


>gi|402771296|ref|YP_006590833.1| DNA polymerase I [Methylocystis sp. SC2]
 gi|401773316|emb|CCJ06182.1| DNA polymerase I [Methylocystis sp. SC2]
          Length = 997

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 132/256 (51%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S  +  T TGRLS+  PNLQN P   +   KIR+AF++ PG+ LI ADY 
Sbjct: 713  INAETGRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFVSAPGHVLISADYS 772

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF    D H+ TA  M+                       VP
Sbjct: 773  QIELRLLAHIADIPQLRRAFAENLDIHAMTASEMFN----------------------VP 810

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            + KD     RR+AK +NF I YG +  GLA    +  EEA   +  ++     +  + ++
Sbjct: 811  I-KDMPPETRRRAKAINFGIIYGISAFGLANQLSIPREEASAYIKRYFERFPGIRDYMDS 869

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +K  R    V T+ GR   FP I S   S R   ERAAIN P+QG+AAD+   AM+ + 
Sbjct: 870  TRKTVREKGAVSTIFGRIYHFPGISSANASDRAFYERAAINAPIQGAAADIIRRAMIRMD 929

Query: 1056 KNARLKELGWKLLLQV 1071
                   L  ++LLQV
Sbjct: 930  DALIRAGLSAQMLLQV 945


>gi|431764107|ref|ZP_19552650.1| DNA polymerase I [Enterococcus faecium E4215]
 gi|430631292|gb|ELB67614.1| DNA polymerase I [Enterococcus faecium E4215]
          Length = 881

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKNQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKEAGLQATMLLQV 833


>gi|421871274|ref|ZP_16302896.1| DNA polymerase I [Brevibacillus laterosporus GI-9]
 gi|372459901|emb|CCF12445.1| DNA polymerase I [Brevibacillus laterosporus GI-9]
          Length = 897

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 142/257 (55%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DY 874
            + GK GRVH   N   T TGRLS+  PNLQN P   ++  KIR+AF+    N  I+A DY
Sbjct: 616  IHGKTGRVHTRFNQATTATGRLSSTEPNLQNIPIRLEEGRKIRKAFVPTNDNCYILAADY 675

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRILAH++   ++++AF    D H+RTAM+++    + V +               
Sbjct: 676  SQIELRILAHISKDPNLIEAFVNNMDIHTRTAMDVFGVSEDEVTSNM------------- 722

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                      RR+AK +NF I YG +  GL+++  +  +EA + +  +++    V  + E
Sbjct: 723  ----------RRQAKAVNFGIVYGISDFGLSQNLNIPRKEAAEFIARYFDVFSGVQNYME 772

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              K +++ D +V TLL R R  P I S   + R+  ER A+NTP+QG+AAD+   AM+++
Sbjct: 773  EIKHQAKKDGYVTTLLHRRRYLPDIASRNFNLRSFAERTAMNTPIQGTAADIIKLAMIQM 832

Query: 1055 SKNARLKELGWKLLLQV 1071
             +     +L  ++LLQV
Sbjct: 833  QEALVRNQLKSRMLLQV 849


>gi|294617839|ref|ZP_06697450.1| DNA polymerase type I [Enterococcus faecium E1679]
 gi|431661111|ref|ZP_19523923.1| DNA polymerase I [Enterococcus faecium E1904]
 gi|291595912|gb|EFF27194.1| DNA polymerase type I [Enterococcus faecium E1679]
 gi|430600231|gb|ELB37885.1| DNA polymerase I [Enterococcus faecium E1904]
          Length = 881

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQALTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|293556212|ref|ZP_06674802.1| DNA polymerase I [Enterococcus faecium E1039]
 gi|294615648|ref|ZP_06695503.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|430825489|ref|ZP_19443693.1| DNA polymerase I [Enterococcus faecium E0164]
 gi|430827618|ref|ZP_19445751.1| DNA polymerase I [Enterococcus faecium E0269]
 gi|430835804|ref|ZP_19453791.1| DNA polymerase I [Enterococcus faecium E0680]
 gi|430838095|ref|ZP_19456045.1| DNA polymerase I [Enterococcus faecium E0688]
 gi|430849690|ref|ZP_19467463.1| DNA polymerase I [Enterococcus faecium E1185]
 gi|430858146|ref|ZP_19475775.1| DNA polymerase I [Enterococcus faecium E1552]
 gi|431146141|ref|ZP_19499038.1| DNA polymerase I [Enterococcus faecium E1620]
 gi|431746177|ref|ZP_19535011.1| DNA polymerase I [Enterococcus faecium E2134]
 gi|291591477|gb|EFF23131.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291601631|gb|EFF31893.1| DNA polymerase I [Enterococcus faecium E1039]
 gi|430445954|gb|ELA55653.1| DNA polymerase I [Enterococcus faecium E0164]
 gi|430484478|gb|ELA61493.1| DNA polymerase I [Enterococcus faecium E0269]
 gi|430489166|gb|ELA65799.1| DNA polymerase I [Enterococcus faecium E0680]
 gi|430492375|gb|ELA68789.1| DNA polymerase I [Enterococcus faecium E0688]
 gi|430537441|gb|ELA77784.1| DNA polymerase I [Enterococcus faecium E1185]
 gi|430546098|gb|ELA86064.1| DNA polymerase I [Enterococcus faecium E1552]
 gi|430575681|gb|ELB14378.1| DNA polymerase I [Enterococcus faecium E1620]
 gi|430608946|gb|ELB46152.1| DNA polymerase I [Enterococcus faecium E2134]
          Length = 881

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKNQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKEAGLQATMLLQV 833


>gi|425069608|ref|ZP_18472723.1| DNA polymerase I [Proteus mirabilis WGLW6]
 gi|404597034|gb|EKA97541.1| DNA polymerase I [Proteus mirabilis WGLW6]
          Length = 949

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/289 (35%), Positives = 150/289 (51%), Gaps = 32/289 (11%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++      + E    I    E   +  L S +   LPL    V+ K  RVH 
Sbjct: 624  KGAPSTNEEVLEALAHSHELPRLI---LEHRGLAKLKSTYTDKLPLM---VNSKTKRVHT 677

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 678  SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIARDGFKIVAADYSQIELRIMAHL 737

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +LDAF  G D H  TA  ++                       +P L +  + +R
Sbjct: 738  SQDKGLLDAFAQGKDIHRATASEVF----------------------GIP-LDEVTSEQR 774

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL++   V  +EA++ +DL++     VL + E  +K++    +
Sbjct: 775  RSAKAINFGLIYGMSAFGLSQQIGVERKEAQRYMDLYFERYPGVLDYMERTRKQASQQGY 834

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM+ +
Sbjct: 835  VETLDGRRLYLPEINSKNAIRRKASEREAINAPMQGTAADIIKKAMIAV 883



 Score = 45.4 bits (106), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 108/252 (42%), Gaps = 65/252 (25%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           ++L    P  ED +I K+  N  FD  ++EN G++++G + DTM  + + +S       +
Sbjct: 420 EVLTALKPILEDKTILKIGQNLKFDRGIMENEGIELNGIYFDTMLESYVLNS---VSSRH 476

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
            ++ L    K ++     +++   KG       G+++   I                   
Sbjct: 477 DMDTLA--EKHLNHKTTTFEEIAGKGK------GQLTFNQI------------------- 509

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
                   E E    Y+A D+  TL L+++L  ++  ++        P K +   Y +  
Sbjct: 510 --------EVEQATLYAAEDADITLLLHQALYPQIEAIA--------PLKHV---YHDIE 550

Query: 603 QPFGEILVKMETEGMLVDREYLS----EI-EKVARAEQEAAVNRFRKWASKHCPDAKYMN 657
            P   +L +ME +G+L+D + L+    EI +++A  E+E      +++           N
Sbjct: 551 MPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKETFALAGQEF-----------N 599

Query: 658 VGSDTQLRQLLF 669
           + S  QL+++LF
Sbjct: 600 LSSPKQLQEILF 611


>gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
 gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
          Length = 893

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/286 (36%), Positives = 155/286 (54%), Gaps = 30/286 (10%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQN 846
            + I  + E   I  L S +I  LP     V+ K GR+H S N   T TGRLS+  PNLQN
Sbjct: 589  EIIPLILEYRKIQKLKSTYIDALP---KMVNPKTGRIHASFNQTGTATGRLSSSDPNLQN 645

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
             P   ++  +IR+A +    N  IV ADY Q+ELRILAHL+  +++L AF+ G D H+ T
Sbjct: 646  LPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLT 705

Query: 906  AMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            A  ++      V+  +V  E                   RR  KM+NFSI YG TP GL+
Sbjct: 706  ASRIF-----NVKPEEVTEEM------------------RRAGKMVNFSIIYGVTPYGLS 742

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
                V V+EA+K +  ++    +V  + +    E++   +V TL GR R  P + +  R+
Sbjct: 743  VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRN 802

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             +   ER AINTP+QG+AAD+   AM+EI +  + +++  K+++QV
Sbjct: 803  TQAEGERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQV 848


>gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
          Length = 978

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRILAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 910  EDALAKENLAARMLLQV 926



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9]
 gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9]
          Length = 937

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/257 (36%), Positives = 138/257 (53%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+   GRVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA  G  ++  DY 
Sbjct: 656  VNPSTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNAEGRRIRQAFIAPTGYKILAVDYS 715

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K++L+AFK G D H+ TA  +      +V T Q              
Sbjct: 716  QIELRIMAHLSGDKALLEAFKQGKDIHAATAAEILGLPIESVTTEQ-------------- 761

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF + YG +  GLA+   +   EA+  +++++     VL + E+
Sbjct: 762  ---------RRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQDYMNVYFERYPGVLEYMES 812

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  +    +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+   AM+ + 
Sbjct: 813  TRIHASEQGYVETLFGRRLYLPDIKSRNGIRRKAAERAAINAPMQGTAADIIKRAMVLVD 872

Query: 1056 KNARLKELG-WKLLLQV 1071
            +    +E G  +LL+QV
Sbjct: 873  EWVEQQETGRVRLLMQV 889


>gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
 gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
          Length = 946

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/265 (38%), Positives = 145/265 (54%), Gaps = 31/265 (11%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYK-IRQAFIAVPGN 867
            LPL    + GK+GRVH S N     TGRLS+  PNLQN P +  DR K IR+AF+A   +
Sbjct: 662  LPL----LLGKDGRVHTSFNQAVAATGRLSSTNPNLQNIP-IRTDRGKEIRRAFVARDND 716

Query: 868  SLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW 926
             +I+ ADY Q+ELRI+A  +  +SML+AF+ G D HS TA  ++                
Sbjct: 717  HVILSADYSQIELRIMAAFSKDESMLNAFRKGVDIHSTTASKVF---------------- 760

Query: 927  HGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNER 986
                K P+   +D  A  RRKAKM+NF I YG +  GL++   +  +EA + +  ++ E 
Sbjct: 761  ----KVPI---EDVTADMRRKAKMVNFGIIYGISAFGLSQRLSIPRKEAAEIITAYFTEF 813

Query: 987  QEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADV 1046
              V  + +A    +R   +V T+LGR R    I S   + R   ER AIN P+QGSAAD+
Sbjct: 814  PAVKAYMDACVNSAREVEYVETILGRRRFLRDINSRNMTMRGFAERNAINAPIQGSAADM 873

Query: 1047 AMCAMLEISKNARLKELGWKLLLQV 1071
               AM+ I    + + L  K++LQV
Sbjct: 874  IKVAMIRIHDWMKKENLKSKMVLQV 898


>gi|386816130|ref|ZP_10103348.1| DNA polymerase I [Thiothrix nivea DSM 5205]
 gi|386420706|gb|EIJ34541.1| DNA polymerase I [Thiothrix nivea DSM 5205]
          Length = 927

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 135/257 (52%), Gaps = 24/257 (9%)

Query: 816  NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
             ++ + GRVH S +     TGRLS+  PNLQN P   ++  +IRQAFIA  G  L+ ADY
Sbjct: 646  QINPRTGRVHTSYHQAVASTGRLSSTDPNLQNIPVRNEEGRRIRQAFIAEKGCKLLAADY 705

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRI+AHL+  K +LDAF  G D H  TA  ++    + V T Q             
Sbjct: 706  SQIELRIMAHLSGDKGLLDAFAHGLDVHRATAAEVFGTPLDEVSTEQ------------- 752

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                      RR AK +NF + YG +  GLA+   V   +A+  V+L++     V  + +
Sbjct: 753  ----------RRAAKAINFGLIYGMSAFGLAKQLGVDRRDAQDYVNLYFARYPGVKQYMD 802

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              ++++R    V TL GR    P IKS   + R + ER AIN P+QG+AAD+   AM+ +
Sbjct: 803  DTREQARAQGFVETLFGRRLFLPDIKSKNAATRQYAERTAINAPMQGTAADIIKKAMIAV 862

Query: 1055 SKNARLKELGWKLLLQV 1071
                R   L  ++++QV
Sbjct: 863  DAWLRDSGLQTRMIMQV 879


>gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
 gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
          Length = 926

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 137/257 (53%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ K GR+H S N   T TGRLS+  PNLQN P   ++  +IR  FIA  GN LI ADY 
Sbjct: 645  INEKTGRIHASFNQTVTATGRLSSSEPNLQNIPVRGEEGREIRNTFIAEKGNLLIAADYS 704

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH +N  ++++AFK   D H +TAM +Y   +  V                  
Sbjct: 705  QIELRLLAHFSNDPALVEAFKNNDDIHRKTAMKIYSVSKEHVT----------------- 747

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                  AS R  AK++NFSI YGKT  GL+++  +  +EA+  +  +++    V  + E 
Sbjct: 748  ------ASMRNIAKIINFSIIYGKTAFGLSKELGIKRKEAEDFIKGYFSTYSRVKPFCEE 801

Query: 996  RKKESRIDNHVHTLLGRARRFP-AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              +E R   +V T+ GR R     I S     RN  ER A+NT +QGSAAD+   AM+ I
Sbjct: 802  VVEEVRNKGYVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLIQGSAADMIKVAMVAI 861

Query: 1055 SKNARLKELGWKLLLQV 1071
             K  +      K+++QV
Sbjct: 862  HKEFKNHFKTAKIVMQV 878


>gi|387760555|ref|YP_006067532.1| DNA polymerase I [Streptococcus salivarius 57.I]
 gi|339291322|gb|AEJ52669.1| DNA polymerase I [Streptococcus salivarius 57.I]
          Length = 833

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 161/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 528  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 585

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 586  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 644

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 645  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 682

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 683  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 742

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 743  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 785


>gi|333891503|ref|YP_004465378.1| DNA polymerase I [Alteromonas sp. SN2]
 gi|332991521|gb|AEF01576.1| DNA polymerase I [Alteromonas sp. SN2]
          Length = 935

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 132/239 (55%), Gaps = 24/239 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S +   T TGRLS+  PNLQN P   ++  K+RQAF+   G  ++ ADY 
Sbjct: 654  INHRTGRVHTSYHQAITATGRLSSTDPNLQNIPIRNEEGRKVRQAFVPREGYKIVAADYS 713

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  + +LDAF  G D H  TA  ++    + V T Q              
Sbjct: 714  QIELRIMAHLSGDEGLLDAFAHGRDIHKATAAEVFGVTLDEVTTEQ-------------- 759

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR AK +NF + YG +  GLA+   +   EA+K +DL++     VL + ++
Sbjct: 760  ---------RRSAKAINFGLIYGMSAFGLAKQLNIPRHEAQKYMDLYFERYPGVLEYMDS 810

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             ++ ++   +V T+ GR    P IK+   ++R   ERAAIN P+QG+AAD+   AM+++
Sbjct: 811  TREGAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINAPMQGTAADIIKMAMIKV 869


>gi|431497705|ref|ZP_19514859.1| DNA polymerase I [Enterococcus faecium E1634]
 gi|430588640|gb|ELB26832.1| DNA polymerase I [Enterococcus faecium E1634]
          Length = 881

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDITP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKNQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKEAGLQATMLLQV 833


>gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 151/259 (58%), Gaps = 29/259 (11%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  ADY
Sbjct: 597  VHHDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 657  SQIELRVLAHIADDDNLIEAFRRDLDIHAKTAMDIF-HVSE------------------- 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 697  ---EEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  TIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKE--LGWKLLLQV 1071
            +  ARLKE  L  +LLLQV
Sbjct: 814  A--ARLKEERLQARLLLQV 830


>gi|359786182|ref|ZP_09289321.1| DNA polymerase I [Halomonas sp. GFAJ-1]
 gi|359296551|gb|EHK60800.1| DNA polymerase I [Halomonas sp. GFAJ-1]
          Length = 926

 Score =  156 bits (395), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/252 (36%), Positives = 137/252 (54%), Gaps = 24/252 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH S +   T TGRLS+  PNLQN P   ++  KIRQAFIA PG  ++ ADY Q+EL
Sbjct: 650  TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFIARPGYRIVAADYSQIEL 709

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K +LDAF  G D H+ TA  ++         G  L +  G+          
Sbjct: 710  RIMAHLSEDKGLLDAFADGRDIHTATAAEVF---------GTSLDKVSGD---------- 750

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                +RR AK +NF + YG +  GL+R   +   +A+  +D +++    V  + +  + +
Sbjct: 751  ----QRRSAKAINFGLIYGMSAWGLSRQLHIDRNQAQTYIDRYFDRYPGVARYMDRIRAQ 806

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +  D  V T+LGR    P I+S  R++R   ER AIN P+QG+AAD+   AM+++     
Sbjct: 807  AAEDGFVETVLGRRLYLPEIQSQNRNRRQGAERTAINAPMQGTAADIIKQAMIDVDAWLA 866

Query: 1060 LKELGWKLLLQV 1071
              E    +++QV
Sbjct: 867  EGEFDALMVMQV 878


>gi|423301030|ref|ZP_17279054.1| DNA polymerase I [Bacteroides finegoldii CL09T03C10]
 gi|408472365|gb|EKJ90893.1| DNA polymerase I [Bacteroides finegoldii CL09T03C10]
          Length = 930

 Score =  156 bits (395), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 154/305 (50%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+       +  + E   +  L+  +I  L    ++ + GRVH S N   T 
Sbjct: 609  YGTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 667

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 668  TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 727

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +  D H+ TA  +Y      ++                  LKD  +  RRKAK  NF
Sbjct: 728  AFLSNHDIHAATAAKIY-----KID------------------LKDVDSDMRRKAKTANF 764

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++     V  + +   + ++   +V T+  R 
Sbjct: 765  GIIYGISVFGLAERMNVERKEAKELIDGYFETYPGVKAYMDQSIRVAQEKGYVETIFHRK 824

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  R + +  K++LQV  
Sbjct: 825  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFRTEGIKAKMILQVHD 884

Query: 1074 FFSFS 1078
              +FS
Sbjct: 885  ELNFS 889



 Score = 43.9 bits (102), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++NEF P FE+ S  KV  N  +D  VL+NYG++V G   DTM
Sbjct: 403 IVNEFRPVFENESSLKVGQNIKYDMIVLQNYGVEVKGPLFDTM 445


>gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
 gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
          Length = 940

 Score =  156 bits (395), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/260 (37%), Positives = 137/260 (52%), Gaps = 29/260 (11%)

Query: 800  SIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYK 856
            S+  LI  +   LPL    +S + GR+H S N   T TGRLS+  PNLQN PA   +   
Sbjct: 643  SVSKLIGTYTEKLPLL---ISKRTGRIHTSFNQAGTTTGRLSSSDPNLQNIPARTHEGKL 699

Query: 857  IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNA 916
            IR+AFIA  G +L+ ADY Q+ELR++AH+A   +++ AFK G D H  TA  +       
Sbjct: 700  IRKAFIAPQGYTLVSADYSQIELRLIAHIAKDPNLIKAFKLGYDIHKATAAEVL------ 753

Query: 917  VETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAK 976
               G+ + E  GE              ER +AK  NF + YG    GL+    +S + AK
Sbjct: 754  ---GKDINEVTGE--------------ERSRAKATNFGLMYGMGAHGLSAQTGLSFKAAK 796

Query: 977  KTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAIN 1036
              +D ++    ++  + ++ KK +    +V T+LGR   FP I S  R      ERAAIN
Sbjct: 797  AYIDCYFTRYPKIRDYMDSIKKFAHEHGYVETILGRRIDFPGINSTNRIAVTGAERAAIN 856

Query: 1037 TPVQGSAADVAMCAMLEISK 1056
             P+QGSAAD+   AM+ I K
Sbjct: 857  APMQGSAADIIKIAMIAIEK 876



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLK-VSGFHADTMHMARLWDS 474
           D+  + AP F DP IKK+ HN  FD  VL   GL  V G +ADTM MA L DS
Sbjct: 406 DVFAKLAPVFADPKIKKIGHNVKFDLLVLYFAGLSAVKGVYADTMLMAHLLDS 458


>gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
            67H29BP]
 gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
            67H29BP]
          Length = 874

 Score =  156 bits (395), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/263 (36%), Positives = 140/263 (53%), Gaps = 31/263 (11%)

Query: 814  GSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG---NSL 869
            G+ +    GRVH S N   T TGRLS+  PNLQN P   ++   +R  F   PG   ++L
Sbjct: 590  GALIRPATGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRAVRALF--TPGEGYDAL 647

Query: 870  IVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGE 929
            + ADY Q+ELRILAH++   +++DAF+ G D H+RTA  ++                   
Sbjct: 648  LSADYSQIELRILAHMSGDATLIDAFRQGQDIHARTAAEVFG------------------ 689

Query: 930  DKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                VPL  DA   E RR+AK +NF I YG +  GLARD  +   EA   +D ++     
Sbjct: 690  ----VPL--DAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREAGGYIDRYFERYHG 743

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            V T+ +    ++  + +V TL GR R  PA+ S    QR+  ER A+NTP+QG+AAD+  
Sbjct: 744  VRTFLDKIVADAHANGYVTTLYGRRRALPALASRNYMQRSFAERMAMNTPIQGTAADLIK 803

Query: 1049 CAMLEISKNARLKELGWKLLLQV 1071
             AM+      +   +  ++LLQV
Sbjct: 804  IAMVRAYDALQAAGVKSRILLQV 826


>gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
 gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
          Length = 883

 Score =  156 bits (395), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 154/282 (54%), Gaps = 26/282 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            +  + E   +  L S ++  LQ      + G++H     N T+TGRLS++ PNLQN P  
Sbjct: 578  VECILEYRQLAKLNSTYVEGLQ--TYIDEKGKIHTRFVQNLTQTGRLSSQDPNLQNIPIR 635

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  ++R AF+ + P   L+ +DY Q+ELR+LAH+AN   M++AFK   D H+ TAM +
Sbjct: 636  TEEGRQVRSAFLPSHPEWKLLSSDYSQIELRVLAHMANDVHMIEAFKNNIDIHTNTAMRV 695

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +                 G   P     ++  +S RR+AK +NF I YG +  GL+++  
Sbjct: 696  F-----------------GIQNP-----EEVTSSMRRQAKAVNFGIVYGISDYGLSQNLN 733

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +  ++AK+ +D +  E Q V  + E    E+R +++V TL  R R  P I S   + R+ 
Sbjct: 734  IPRKKAKEFIDRYLEEFQGVKDYMETIVAEARQNDYVETLFHRRRYLPEIHSSNFNIRSF 793

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             ER A+N+P+QG+AAD+   AM+E+ +    +    KLLLQV
Sbjct: 794  AERTAMNSPIQGTAADILKVAMIELDRELTERNFQAKLLLQV 835


>gi|419800176|ref|ZP_14325475.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0449]
 gi|385696029|gb|EIG26552.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0449]
          Length = 881

 Score =  156 bits (395), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 157/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I S I  +  I  +Q + V G      ++G++H   +   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAFK
Sbjct: 622  SVDPNLQNIPVRLEQGRL-IRKAFVPEEDNSVLLSSDYSQIELRVLAHISGDEHLIDAFK 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         K+LLQV
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALEAGAYKTKMLLQV 833


>gi|357386727|ref|YP_004901451.1| DNA polymerase I [Pelagibacterium halotolerans B2]
 gi|351595364|gb|AEQ53701.1| DNA polymerase I [Pelagibacterium halotolerans B2]
          Length = 963

 Score =  156 bits (395), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 93/258 (36%), Positives = 139/258 (53%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S ++ +  RVH S N  +  TGRLS+  PNLQN P   +D  KIR AFIA PGN LI AD
Sbjct: 677  SYINERTKRVHTSYNQASVATGRLSSNEPNLQNIPIRTEDGRKIRTAFIAAPGNLLISAD 736

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+  ++ DAF+ G D H+ TA  M+                       
Sbjct: 737  YSQIELRVLAHIADIDALKDAFEEGLDIHAMTASEMF----------------------G 774

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
            VP ++D     RR+AK +NF I YG +  GLA    ++  EA + +  ++     +  + 
Sbjct: 775  VP-IEDMDPMVRRRAKAINFGIIYGISAFGLANQLGIARSEAGEYIKTYFARFPGIQDYM 833

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
              +++  +   +V T+ GR   F  + +   S+R  IERA+IN P+QGSAAD+   AM+ 
Sbjct: 834  AEQRRIVKAQGYVSTIFGRKIPFENVNTKNPSERAFIERASINAPIQGSAADIIRRAMIR 893

Query: 1054 ISKNARLKELGWKLLLQV 1071
            + +    + +   +LLQV
Sbjct: 894  MERILTEENVPADMLLQV 911


>gi|336309600|ref|ZP_08564584.1| DNA polymerase I [Shewanella sp. HN-41]
 gi|335866911|gb|EGM71853.1| DNA polymerase I [Shewanella sp. HN-41]
          Length = 920

 Score =  156 bits (395), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 93/247 (37%), Positives = 128/247 (51%), Gaps = 27/247 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 635  LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRK 691

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++                 G
Sbjct: 692  ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF-----------------G 734

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
             D        D    +RR+AK +NF + YG +  GLAR   +   EA+  +D ++     
Sbjct: 735  TD------FDDVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQTYIDTYFARYPG 788

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+  
Sbjct: 789  VLKYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAADIIK 848

Query: 1049 CAMLEIS 1055
             AM+ I+
Sbjct: 849  KAMISIA 855



 Score = 46.6 bits (109), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 105/264 (39%), Gaps = 63/264 (23%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
           L +  P  ED ++KKV  N  +D  +L N G+K+ G   DTM  + +++S  SR    G 
Sbjct: 393 LAKLRPILEDANLKKVGQNLKYDMSILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGL 452

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
           +L+ L                    G+ + GF      +DI G+   +   +   +   A
Sbjct: 453 ALKYL--------------------GHKNIGF------EDIAGKGAKQLTFNQIPLENAA 486

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
           P              Y+A D+  TL+L++ L        W    K     S+F    E  
Sbjct: 487 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELASVF---TEIE 521

Query: 603 QPFGEILVKMETEGMLVDREYLS-EIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            P  ++L  +E +G+L+D   L  + E++AR   E     +     K        N+ S 
Sbjct: 522 LPLIQVLSDIERQGVLIDSMLLGQQSEELARKIDELESKAYDIAGEK-------FNLSSP 574

Query: 662 TQLRQLLFG--GKPNSKDDSESLP 683
            QL+ L F   G P +K   +  P
Sbjct: 575 KQLQVLFFEKLGYPITKKTPKGAP 598


>gi|336313795|ref|ZP_08568717.1| DNA polymerase I [Rheinheimera sp. A13L]
 gi|335881734|gb|EGM79611.1| DNA polymerase I [Rheinheimera sp. A13L]
          Length = 925

 Score =  156 bits (395), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/247 (37%), Positives = 136/247 (55%), Gaps = 27/247 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL   +V+   GRVH S +     TGRLS+  PNLQN P   ++  +IRQAFIA  G +
Sbjct: 640  LPL---SVNPATGRVHTSYHQAVAATGRLSSTEPNLQNIPIRSEEGRRIRQAFIAEAGKT 696

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++  DY Q+ELRI+AHL+   ++L+AF  G D H  TA  ++      V   QV  E   
Sbjct: 697  ILAIDYSQIELRIMAHLSRDPALLNAFAQGKDIHRATAAEVF-----GVALDQVSSE--- 748

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                           +RR+AK +NF + YG +  GLAR   +S  EA++ VDL++     
Sbjct: 749  ---------------QRRRAKAVNFGLIYGMSAFGLARQLGISRSEAQQYVDLYFERFPG 793

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  + ++    +V TL GR    P I +   +++   ERAAIN P+QG+AAD+  
Sbjct: 794  VLDYMERTRTQAHEQGYVETLFGRRLYLPEINAKNMARKKGAERAAINAPMQGTAADIIK 853

Query: 1049 CAMLEIS 1055
             AM++++
Sbjct: 854  MAMIKVA 860


>gi|397685261|ref|YP_006522580.1| DNA polymerase I [Pseudomonas stutzeri DSM 10701]
 gi|395806817|gb|AFN76222.1| DNA polymerase I [Pseudomonas stutzeri DSM 10701]
          Length = 914

 Score =  156 bits (394), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/263 (36%), Positives = 138/263 (52%), Gaps = 27/263 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LP Q   ++ + GR+H S +   T TGRLS+  PNLQN P    +  +IRQAF+A PG  
Sbjct: 630  LPQQ---INPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYK 686

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            L+ ADY Q+ELRI+AHLA    +L AF+ G D H  TA  ++      VE  QV  +   
Sbjct: 687  LLAADYSQIELRIMAHLAQDAGLLHAFQNGLDVHRATAAEVF-----GVELAQVTSDM-- 739

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR AK +NF + YG +  GLA+   V  +EA++ +D ++     
Sbjct: 740  ----------------RRSAKAINFGLIYGMSAFGLAKQIDVGRKEAQEYIDRYFARYPG 783

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  + ++    +V TL GR    P I S   + R   ER AIN P+QG+AAD+  
Sbjct: 784  VLAYMERTRAQAAEQGYVETLFGRRLYLPEINSKNGAMRKGAERTAINAPMQGTAADIIK 843

Query: 1049 CAMLEISKNARLKELGWKLLLQV 1071
             AM+ +    +   L  +++LQV
Sbjct: 844  RAMIAVDGWLQESGLDARVILQV 866


>gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126]
 gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126]
          Length = 879

 Score =  156 bits (394), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 161/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 831


>gi|340399640|ref|YP_004728665.1| DNA polymerase I [Streptococcus salivarius CCHSS3]
 gi|338743633|emb|CCB94143.1| DNA polymerase I [Streptococcus salivarius CCHSS3]
          Length = 879

 Score =  156 bits (394), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 161/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H     + T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 831


>gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
 gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
          Length = 949

 Score =  156 bits (394), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/289 (35%), Positives = 149/289 (51%), Gaps = 32/289 (11%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++      + E    I    E   +  L S +   LPL    V+ K  RVH 
Sbjct: 624  KGAPSTNEEVLEALAHSHELPRLI---LEHRGLAKLKSTYTDKLPLM---VNSKTKRVHT 677

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+R PNLQN P   ++  +IRQAFI   G  ++ ADY Q+ELRI+AHL
Sbjct: 678  SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIVRDGFKIVAADYSQIELRIMAHL 737

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  K +LDAF  G D H  TA  ++                       +P L +  A +R
Sbjct: 738  SQDKGLLDAFAQGKDIHRATASEVF----------------------GIP-LDEVTAEQR 774

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL++   V  +EA++ +DL++     VL + E  +K++    +
Sbjct: 775  RSAKAINFGLIYGMSAFGLSQQIGVERKEAQRYMDLYFERYPGVLDYMERTRKQASQQGY 834

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM+ +
Sbjct: 835  VETLDGRRLYLPEINSKNAIRRKASEREAINAPMQGTAADIIKKAMIAV 883



 Score = 45.4 bits (106), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 108/252 (42%), Gaps = 65/252 (25%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           ++L    P  ED +I K+  N  FD  ++EN G++++G + DTM  + + +S       +
Sbjct: 420 EVLTALKPILEDKTILKIGQNLKFDRGIMENEGIELNGIYFDTMLESYVLNS---VSSRH 476

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
            ++ L    K ++     +++   KG       G+++   I                   
Sbjct: 477 DMDTLA--EKHLNHKTTTFEEIAGKGK------GQLTFNQI------------------- 509

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
                   E E    Y+A D+  TL L+++L  ++  ++        P K +   Y +  
Sbjct: 510 --------EVEQATLYAAEDADITLLLHQALYPQIEAIA--------PLKHV---YHDIE 550

Query: 603 QPFGEILVKMETEGMLVDREYLS----EI-EKVARAEQEAAVNRFRKWASKHCPDAKYMN 657
            P   +L +ME +G+L+D + L+    EI +++A  E+E      +++           N
Sbjct: 551 MPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKETFALAGQEF-----------N 599

Query: 658 VGSDTQLRQLLF 669
           + S  QL+++LF
Sbjct: 600 LSSPKQLQEILF 611


>gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836]
 gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836]
          Length = 901

 Score =  156 bits (394), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 143/258 (55%), Gaps = 25/258 (9%)

Query: 816  NVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVAD 873
             +S ++ R+H + N     TGRLS+  PNLQN P   ++  +IR+AF+   G  SL+ AD
Sbjct: 618  TISPRDARIHTTFNQTIAATGRLSSTDPNLQNIPIRTEEGRRIREAFVVGEGYESLMSAD 677

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+E+RI+AH++  + ++DAF +G DFHS TA  ++     +V+ G+V  E        
Sbjct: 678  YSQIEMRIMAHVSEDEGLIDAFNSGEDFHSVTAARVF-----SVQPGEVTQEM------- 725

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       R K K +N+ +AYG +  GL++  K+ V+EAK  +D ++     V  + 
Sbjct: 726  -----------RAKIKAMNYGLAYGLSAYGLSQQLKIGVDEAKGLMDEYFERFGGVRDYL 774

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
             +   E+    +  T+LGR R  P + S  R +R   ER A+N P+QGSAADV   AML+
Sbjct: 775  RSIVIEAGKSGYTETILGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADVIKLAMLK 834

Query: 1054 ISKNARLKELGWKLLLQV 1071
            +  + R   L  ++LLQV
Sbjct: 835  VDASLRSSGLKSRMLLQV 852


>gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
          Length = 949

 Score =  156 bits (394), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 154/305 (50%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+       +  + E   +  L+  +I  L    ++ + GRVH S N   T 
Sbjct: 628  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTS 686

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 687  TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +  D H+ TA  +Y      ++                  LKD  +  RRKAK  NF
Sbjct: 747  AFLSNHDIHAATAAKIY-----KID------------------LKDVDSDMRRKAKTANF 783

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++     V  + E   + ++   +V T+  R 
Sbjct: 784  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRK 843

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + +  K++LQV  
Sbjct: 844  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHD 903

Query: 1074 FFSFS 1078
              +FS
Sbjct: 904  ELNFS 908



 Score = 44.7 bits (104), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++NEF P FE+ +  KV  N  +D  VLENYG++V G   DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDTM 464


>gi|418028173|ref|ZP_12666755.1| DNA-directed DNA polymerase [Streptococcus thermophilus CNCM I-1630]
 gi|354687973|gb|EHE88024.1| DNA-directed DNA polymerase [Streptococcus thermophilus CNCM I-1630]
          Length = 879

 Score =  156 bits (394), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 161/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKNKGYVSTLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 831


>gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27]
 gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27]
          Length = 834

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 155/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL  S V  + GR+H   N   T TGRLS
Sbjct: 519  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 578  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 638  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 675  MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 735  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLREMGARMLLQV 785


>gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
 gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
          Length = 949

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 154/305 (50%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+       +  + E   +  L+  +I  L    ++ + GRVH S N   T 
Sbjct: 628  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTS 686

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 687  TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +  D H+ TA  +Y      ++                  LKD  +  RRKAK  NF
Sbjct: 747  AFLSNHDIHAATAAKIY-----KID------------------LKDVDSDMRRKAKTANF 783

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++     V  + E   + ++   +V T+  R 
Sbjct: 784  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRK 843

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + +  K++LQV  
Sbjct: 844  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHD 903

Query: 1074 FFSFS 1078
              +FS
Sbjct: 904  ELNFS 908



 Score = 44.7 bits (104), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++NEF P FE+ +  KV  N  +D  VLENYG++V G   DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDTM 464


>gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 933

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 94/247 (38%), Positives = 129/247 (52%), Gaps = 27/247 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ + GRVH S +  N  TGRLS+  PNLQN P   ++  +IR AFIA  G  
Sbjct: 648  LPLM---VNAQTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGRK 704

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF  G D H  TA  ++      V T Q       
Sbjct: 705  VLAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFTEVTTEQ------- 757

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR+AK +NF + YG +  GLAR   +   EA+K +D ++     
Sbjct: 758  ----------------RRRAKAVNFGLIYGMSAFGLARQLDIPRGEAQKYIDTYFKRYPG 801

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +  +    +V TL GR    PAIK     +R   ERAAIN P+QG+AAD+  
Sbjct: 802  VLNYMEETRAIAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIK 861

Query: 1049 CAMLEIS 1055
             AM+ ++
Sbjct: 862  KAMINVA 868



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 146/354 (41%), Gaps = 78/354 (22%)

Query: 322 ASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
           AS   ++E+ E+ +  + + YS ++  D +       W +    K  + A DTE   ++ 
Sbjct: 314 ASTQTSTEEDELPKQDIKTEYSTILTHDELDE-----W-IDKLSKAELFAVDTETTSLNY 367

Query: 382 KQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR----DLLNEFAPFFEDPSI 437
            +   V     + F++ +G  A        +  D LD   +    + L +  P  E+P I
Sbjct: 368 MEAKLVG----LSFAVEAGKAAYL-----PLAHDYLDAPQQLNQAEALAKLKPLLENPEI 418

Query: 438 KKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSED 497
           KKV  N  +D  +L N G+K+ G   DTM  + +++S                       
Sbjct: 419 KKVGQNLKYDMSILANVGIKLQGIAFDTMLESYVFNSV---------------------- 456

Query: 498 KKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWIS 557
                   SK N D+     +++K   G + +  +  AGK +      ++     E+   
Sbjct: 457 -------ASKHNMDD-----LALK-YLGHKNISFEEIAGKGAKQLTFNQIS---LEVAAP 500

Query: 558 YSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEG 616
           Y+A D+  TL+L++ L        W +L  +P     +   + E   P  ++L  ME +G
Sbjct: 501 YAAEDADITLRLHQHL--------WPRLQKEP----ELASIFTEIELPLVQVLSDMERQG 548

Query: 617 MLVDREYL-SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
           +L+D   L  + E++AR      ++   + A +   ++   N+ S  QL+ L F
Sbjct: 549 VLIDSMLLGQQSEELAR-----TIDELEQKAYEIAGES--FNLSSPKQLQVLFF 595


>gi|359396295|ref|ZP_09189347.1| DNA polymerase I [Halomonas boliviensis LC1]
 gi|357970560|gb|EHJ93007.1| DNA polymerase I [Halomonas boliviensis LC1]
          Length = 894

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 92/252 (36%), Positives = 137/252 (54%), Gaps = 24/252 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH S +   T TGRLS+  PNLQN P   ++  KIRQAFIA PG  ++ ADY Q+EL
Sbjct: 618  TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFIARPGYRIVAADYSQIEL 677

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K +L+AF  G D H+ TA  ++         G  L +  G+          
Sbjct: 678  RIMAHLSEDKGLLEAFAEGRDIHTATAAEVF---------GTSLEKVSGD---------- 718

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                +RR AK +NF + YG +  GL+R   +   +A+  +D +++    V  + E  + +
Sbjct: 719  ----QRRSAKAINFGLIYGMSAWGLSRQLHIERNQAQTYIDRYFDRYPGVARYMERIRSQ 774

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +  D  V T+LGR    P I+S  R++R   ER AIN P+QG+AAD+   AM+++     
Sbjct: 775  AAEDGFVETVLGRRLYLPEIQSQNRNRRQGAERTAINAPMQGTAADIIKQAMIDVDAWLA 834

Query: 1060 LKELGWKLLLQV 1071
              E    +++QV
Sbjct: 835  EGEFDALMVMQV 846


>gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1]
          Length = 994

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 710  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 807

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 808  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 865

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 866  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 925

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 926  EDALAKENLAARMLLQV 942



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660


>gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311]
 gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG 18311]
          Length = 879

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 161/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 831


>gi|421453198|ref|ZP_15902554.1| DNA polymerase I [Streptococcus salivarius K12]
 gi|400181507|gb|EJO15774.1| DNA polymerase I [Streptococcus salivarius K12]
          Length = 898

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 161/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H     + T+TGRLS+  PNLQN P  
Sbjct: 593  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 650

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 651  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 709

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 710  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 747

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 748  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 807

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 808  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 850


>gi|418018635|ref|ZP_12658191.1| DNA polymerase I [Streptococcus salivarius M18]
 gi|345527484|gb|EGX30795.1| DNA polymerase I [Streptococcus salivarius M18]
          Length = 879

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 160/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +   +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYILG--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 831


>gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308]
 gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19]
 gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
 gi|376271967|ref|YP_005150545.1| DNA polymerase I [Brucella abortus A13334]
 gi|423167735|ref|ZP_17154438.1| DNA polymerase I [Brucella abortus bv. 1 str. NI435a]
 gi|423169889|ref|ZP_17156564.1| DNA polymerase I [Brucella abortus bv. 1 str. NI474]
 gi|423175120|ref|ZP_17161789.1| DNA polymerase I [Brucella abortus bv. 1 str. NI486]
 gi|423178029|ref|ZP_17164674.1| DNA polymerase I [Brucella abortus bv. 1 str. NI488]
 gi|423179322|ref|ZP_17165963.1| DNA polymerase I [Brucella abortus bv. 1 str. NI010]
 gi|423182452|ref|ZP_17169089.1| DNA polymerase I [Brucella abortus bv. 1 str. NI016]
 gi|423186605|ref|ZP_17173219.1| DNA polymerase I [Brucella abortus bv. 1 str. NI021]
 gi|423190957|ref|ZP_17177565.1| DNA polymerase I [Brucella abortus bv. 1 str. NI259]
 gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA
            polymerase, family A:5'-3' exonuclease:3'-5'
            exonuclease:Hel [Brucella melitensis biovar Abortus 2308]
 gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19]
 gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
 gi|363399573|gb|AEW16543.1| DNA polymerase I [Brucella abortus A13334]
 gi|374537351|gb|EHR08864.1| DNA polymerase I [Brucella abortus bv. 1 str. NI486]
 gi|374541169|gb|EHR12668.1| DNA polymerase I [Brucella abortus bv. 1 str. NI435a]
 gi|374542125|gb|EHR13614.1| DNA polymerase I [Brucella abortus bv. 1 str. NI474]
 gi|374548329|gb|EHR19780.1| DNA polymerase I [Brucella abortus bv. 1 str. NI488]
 gi|374550841|gb|EHR22276.1| DNA polymerase I [Brucella abortus bv. 1 str. NI010]
 gi|374551298|gb|EHR22732.1| DNA polymerase I [Brucella abortus bv. 1 str. NI016]
 gi|374553647|gb|EHR25061.1| DNA polymerase I [Brucella abortus bv. 1 str. NI259]
 gi|374558284|gb|EHR29678.1| DNA polymerase I [Brucella abortus bv. 1 str. NI021]
          Length = 978

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRTHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 910  EDALAKENLAARMLLQV 926



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|398382219|ref|ZP_10540316.1| DNA polymerase I [Rhizobium sp. AP16]
 gi|397717910|gb|EJK78507.1| DNA polymerase I [Rhizobium sp. AP16]
          Length = 1000

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 148/298 (49%), Gaps = 38/298 (12%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 720  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 779

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+AN   +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 780  LAHVANIPQLEQAFADGVDIHAMTASEMF----------------------GVPI--EGM 815

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+ K  +
Sbjct: 816  PSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMESTKATA 875

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   FP I+S   S R   ERA+IN P+QGSAADV   AM+++      
Sbjct: 876  RDKGYVETIFGRRVHFPEIRSSNPSVRAFNERASINAPIQGSAADVIRRAMIKMEPALAD 935

Query: 1061 KELG--WKLLLQVLFFFSFSF------FSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
              LG   ++LLQV     F         S  VIVS    V+ NA  P    S  L  D
Sbjct: 936  AGLGDRVRMLLQVHDELIFEVEDADVERSTPVIVS----VMENAAMPAVNMSVPLKVD 989



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 144/369 (39%), Gaps = 93/369 (25%)

Query: 328 SEKLEILRSKLASF------YSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
           +E  ++ +++ ASF      +S    + +V+   +  W+   +   +V A DTE   +DV
Sbjct: 356 TEPADLTKARAASFATAPIDHSKYATIRDVATLDQ--WIADARETGIV-AFDTETTSLDV 412

Query: 382 KQETPVDHGEVICFSIYSGPEADFGNGKS--CIWVDLLDGGG----------------RD 423
            Q       E++ FS+      +   G S    +V L    G                RD
Sbjct: 413 MQ------AEIVGFSLAIADNKNDPTGASIRAAYVPLNHKNGVGDLLGGGLADNQIPLRD 466

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
            L       ED S+ K+  N  +D  +++ YG++  GF  DTM ++ + D       G  
Sbjct: 467 ALPRLKALLEDTSVLKIAQNLKYDYLLMKRYGIETKGFD-DTMLLSYVLDGGANATHG-- 523

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKISTI 541
           +++L+                       E ++G   I+ KD+ G         +GK +  
Sbjct: 524 MDSLS-----------------------ERWLGHKPIAYKDVAG---------SGKSNIT 551

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
             + ++ R       +Y+A D+  TL+L+  LK +L              + +   Y+  
Sbjct: 552 FDLVDIDRA-----TAYAAEDADVTLRLWLVLKPRL------------AAEKLATVYERL 594

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            +P   +L  ME  G+ +DR+ LS      R   E A    R     +    +  N+GS 
Sbjct: 595 ERPLVPVLAHMEERGITIDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIGSP 648

Query: 662 TQLRQLLFG 670
            QL  +LFG
Sbjct: 649 KQLGDILFG 657


>gi|320106496|ref|YP_004182086.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
 gi|319925017|gb|ADV82092.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
          Length = 934

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 150/300 (50%), Gaps = 30/300 (10%)

Query: 777  KIFATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-IN 831
            K+ +T Q+  E      +A + + E   +  L SN+    Q   ++ + GRVH + N + 
Sbjct: 612  KVVSTAQDVLEELAAHHEAPALVLEYRQLAKLRSNYTE--QLPQLADREGRVHTTFNQVG 669

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P       +IR AFI   GN L+ ADY Q+ELR++AH +    +
Sbjct: 670  TATGRLSSTNPNLQNIPTRTALGREIRAAFIPAEGNVLLSADYSQIELRLMAHFSQDPLL 729

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            LDA++ G D H+ TA  ++             ++    DK             R +AK +
Sbjct: 730  LDAYRTGKDIHTITAAEVFE------------VDPETMDK-----------ETRNRAKAV 766

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +P GLA    +   EAK  ++ +      V  + E    ++R    V TL G
Sbjct: 767  NFGIVYGISPFGLAAQLGIPQGEAKLYIERYRERYAGVTAFIERTISDTRSTGKVSTLFG 826

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S   +QR   ER A+NTP+QG+AAD+   AML+I      ++L  ++ LQV
Sbjct: 827  RTRPIPDIGSRNPNQRGFAERTAVNTPLQGTAADMIKIAMLKIDAALTERKLATRMTLQV 886


>gi|383124841|ref|ZP_09945502.1| DNA polymerase I [Bacteroides sp. 1_1_6]
 gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6]
          Length = 949

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 154/305 (50%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+       +  + E   +  L+  +I  L    ++ + GRVH S N   T 
Sbjct: 628  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTS 686

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 687  TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +  D H+ TA  +Y      ++                  LKD  +  RRKAK  NF
Sbjct: 747  AFLSNHDIHAATAAKIY-----KID------------------LKDVDSDMRRKAKTANF 783

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++     V  + E   + ++   +V T+  R 
Sbjct: 784  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRK 843

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + +  K++LQV  
Sbjct: 844  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHD 903

Query: 1074 FFSFS 1078
              +FS
Sbjct: 904  ELNFS 908



 Score = 44.7 bits (104), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++NEF P FE+ +  KV  N  +D  VLENYG++V G   DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDTM 464


>gi|1097211|prf||2113329A DNA polymerase
          Length = 834

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 155/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL  S V  + GR+H   N   T TGRLS
Sbjct: 519  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 578  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 638  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 675  MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 735  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLREMGARMLLQV 785


>gi|409394912|ref|ZP_11246055.1| DNA polymerase I [Pseudomonas sp. Chol1]
 gi|409396448|ref|ZP_11247434.1| DNA polymerase I [Pseudomonas sp. Chol1]
 gi|409118929|gb|EKM95319.1| DNA polymerase I [Pseudomonas sp. Chol1]
 gi|409120427|gb|EKM96772.1| DNA polymerase I [Pseudomonas sp. Chol1]
          Length = 914

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/263 (36%), Positives = 139/263 (52%), Gaps = 27/263 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LP Q   ++ + GR+H S +   T TGRLS+  PNLQN P    +  +IRQAFIA PG  
Sbjct: 630  LPQQ---INPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAAPGYQ 686

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            L+ ADY Q+ELRI+AHLA    +L+AF+ G D H  TA  ++                  
Sbjct: 687  LLAADYSQIELRIMAHLAQDAGLLEAFRNGLDVHRATAAEVF------------------ 728

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 VP L+   + +RR AK +NF + YG +  GLA+   V  +EA++ +D ++     
Sbjct: 729  ----GVP-LEQVSSDQRRSAKAINFGLIYGMSAFGLAKQIGVGRKEAQEYIDRYFARYPG 783

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  + ++     V TL GR    P I S   + R   ER AIN P+QG+AAD+  
Sbjct: 784  VLAYMERTRTQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAINAPMQGTAADIIK 843

Query: 1049 CAMLEISKNARLKELGWKLLLQV 1071
             AM+ +    +   L  +++LQV
Sbjct: 844  RAMVAVDVWLQESGLDARIILQV 866


>gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
          Length = 995

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 711  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 770

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 771  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 808

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 809  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 866

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 867  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 926

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 927  EDALAKENLAARMLLQV 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 407 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 453

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 454 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 512

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 513 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 541

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 542 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 580

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 581 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 636

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 637 --GEKFTIGSPKQLGDILFGKMGLPGA 661


>gi|417848742|ref|ZP_12494674.1| putative DNA-directed DNA polymerase [Streptococcus mitis SK1080]
 gi|339457490|gb|EGP70057.1| putative DNA-directed DNA polymerase [Streptococcus mitis SK1080]
          Length = 877

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 159/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+   G+S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPVRLEQGRL-IRKAFVPEWGDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P     +D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----EDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGAYQTKMLLQV 829


>gi|414075154|ref|YP_007000371.1| DNA polymerase I [Lactococcus lactis subsp. cremoris UC509.9]
 gi|413975074|gb|AFW92538.1| DNA polymerase I [Lactococcus lactis subsp. cremoris UC509.9]
          Length = 877

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 157/293 (53%), Gaps = 31/293 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  + + I  +  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 559  AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P   ++  KIR+AF+    + L+ +DY Q+ELR+LAH++  + ++DAFK G
Sbjct: 619  SVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHG 678

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ T+M ++      +E  +                 D  A++RR AK +NF + YG
Sbjct: 679  ADIHTSTSMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GLAR+  ++ ++AK  ++ ++     + T+ E   +E+R    V T+  R R+ P 
Sbjct: 717  ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            I +   + R   ER AIN+P+QGSAAD+   AM+ + +    ++   KLLLQV
Sbjct: 777  INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDRALTERQSKSKLLLQV 829


>gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
 gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
          Length = 978

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 910  EDALAKENLAARMLLQV 926



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLVQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13]
 gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13]
          Length = 994

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 710  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 807

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 808  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 865

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 866  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 925

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 926  EDALAKENLAARMLLQV 942



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 126/327 (38%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           V A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 406 VLAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 453 GMVENQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+   + G   L                           E ++G   I+ KD+ G     
Sbjct: 512 DAGTGSHGMNPLS--------------------------ERWLGHTPIAYKDVAG----- 540

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660


>gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
          Length = 994

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 710  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 807

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 808  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 865

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 866  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 925

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 926  EDALAKENLAARMLLQV 942



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660


>gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653]
 gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653]
          Length = 978

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 910  EDALAKENLAARMLLQV 926



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 126/327 (38%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           V A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 VLAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+   + G   L                           E ++G   I+ KD+ G     
Sbjct: 496 DAGTGSHGMNPLS--------------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRLA------------ 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124]
 gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124]
          Length = 879

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 161/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 831


>gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|384210490|ref|YP_005599572.1| DNA polymerase I [Brucella melitensis M5-90]
 gi|384407595|ref|YP_005596216.1| DNA polymerase I [Brucella melitensis M28]
 gi|384444212|ref|YP_005602931.1| DNA polymerase I [Brucella melitensis NI]
 gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28]
 gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90]
 gi|349742209|gb|AEQ07752.1| DNA polymerase I [Brucella melitensis NI]
          Length = 978

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 910  EDALAKENLAARMLLQV 926



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 126/327 (38%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+   + G   L                           E ++G   I+ KD+ G     
Sbjct: 496 DAGTDSHGMDPLS--------------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
 gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
          Length = 932

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 135/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPQGYR 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  + +L AF AG D H  TA  ++                  
Sbjct: 704  IMAADYSQIELRIMAHLSQDEGLLTAFAAGKDIHRATAAEVF------------------ 745

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 +PL K   + +RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 746  ----GLPLEK-VTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 801  VLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 861  RAMIAV 866


>gi|431106077|ref|ZP_19497234.1| DNA polymerase I [Enterococcus faecium E1613]
 gi|430569609|gb|ELB08599.1| DNA polymerase I [Enterococcus faecium E1613]
          Length = 881

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/294 (35%), Positives = 155/294 (52%), Gaps = 32/294 (10%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  +  +L   +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETDLQATMLLQV 833


>gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
 gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 994

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 710  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 807

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 808  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 865

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 866  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 925

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 926  EDALAKENLAARMLLQV 942



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660


>gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK]
 gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK]
          Length = 922

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 95/257 (36%), Positives = 138/257 (53%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+   GRVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA  G  ++  DY 
Sbjct: 641  VNPSTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNAEGRRIRQAFIAPTGYKILAVDYS 700

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K++L+AFK G D H+ TA  +      +V T Q              
Sbjct: 701  QIELRIMAHLSGDKALLEAFKQGKDIHAATAAEILGLPIESVTTEQ-------------- 746

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF + YG +  GLA+   +   EA+  +++++     VL + E+
Sbjct: 747  ---------RRRAKAINFGLIYGMSAFGLAKQLGMGRNEAQDYMNVYFERYPGVLEYMES 797

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  +    +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+   AM+ + 
Sbjct: 798  TRVHASEQGYVETLFGRRLYLPDIKSRNGIRRKAAERAAINAPMQGTAADIIKRAMVLVD 857

Query: 1056 KNARLKELG-WKLLLQV 1071
            +    +E G  +LL+QV
Sbjct: 858  EWVEQQETGRVRLLMQV 874


>gi|3041672|sp|P52026.2|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I
          Length = 876

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 146/253 (57%), Gaps = 25/253 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLE 878
             G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+E
Sbjct: 599  TGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIE 658

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+A   ++++AF+ G D H++TAM+++ H+                        +
Sbjct: 659  LRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIF-HVSE----------------------E 695

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + +   +
Sbjct: 696  DVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQ 755

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++S   
Sbjct: 756  EAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLSVRL 815

Query: 1059 RLKELGWKLLLQV 1071
            R + L  +LLLQV
Sbjct: 816  REERLQARLLLQV 828


>gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|386087361|ref|YP_006003235.1| DNA polymerase I [Streptococcus thermophilus ND03]
 gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03]
          Length = 879

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 161/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 831


>gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94]
 gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94]
 gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1]
          Length = 994

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 710  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 807

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 808  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 865

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 866  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 925

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 926  EDALAKENLAARMLLQV 942



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660


>gi|222084398|ref|YP_002542927.1| DNA polymerase I [Agrobacterium radiobacter K84]
 gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
          Length = 1000

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 148/298 (49%), Gaps = 38/298 (12%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 720  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 779

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+AN   +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 780  LAHVANIPQLEQAFADGVDIHAMTASEMF----------------------GVPI--EGM 815

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+ K  +
Sbjct: 816  PSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMESTKATA 875

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   FP I+S   S R   ERA+IN P+QGSAADV   AM+++      
Sbjct: 876  RDKGYVETIFGRRVHFPEIRSSNPSVRAFNERASINAPIQGSAADVIRRAMIKMEPALAD 935

Query: 1061 KELG--WKLLLQVLFFFSFSF------FSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
              LG   ++LLQV     F         S  VIVS    V+ NA  P    S  L  D
Sbjct: 936  AGLGDRVRMLLQVHDELIFEVEDADVERSTPVIVS----VMENAAMPAVNMSVPLKVD 989



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 145/369 (39%), Gaps = 93/369 (25%)

Query: 328 SEKLEILRSKLASF------YSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDV 381
           +E  ++ +++ ASF      +S  + + +V    +  W+   +   +V A DTE   +DV
Sbjct: 356 TEPADLTKARAASFATAPIDHSKYVTIRDVGTLDR--WIADARETGIV-AFDTETTSLDV 412

Query: 382 KQETPVDHGEVICFSIYSGPEADFGNGKS--CIWVDLLDGGG----------------RD 423
            Q       E++ FS+      +  +G S    +V L    G                RD
Sbjct: 413 MQ------AEIVGFSLAIADNKNDPSGASIRAAYVPLNHKNGVGDLLGGGLADNQIPLRD 466

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
            L       ED S+ K+  N  +D  +++ YG++  GF  DTM ++ + D       G  
Sbjct: 467 ALPRLKALLEDTSVLKIAQNLKYDYLLMKRYGIETKGFD-DTMLLSYVLDGGANATHG-- 523

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKISTI 541
           +++L+                       E ++G   I+ KD+ G         +GK +  
Sbjct: 524 MDSLS-----------------------ERWLGHKPIAYKDVAG---------SGKSNIT 551

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
             + ++ R       +Y+A D+  TL+L+  LK +L              + +   Y+  
Sbjct: 552 FDLVDIDRA-----TAYAAEDADVTLRLWLVLKPRL------------AAEKLATVYERL 594

Query: 602 WQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            +P   +L  ME  G+ +DR+ LS      R   E A    R     +    +  N+GS 
Sbjct: 595 ERPLVPVLAHMEERGITIDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIGSP 648

Query: 662 TQLRQLLFG 670
            QL  +LFG
Sbjct: 649 KQLGDILFG 657


>gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus HB8]
 gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB]
          Length = 834

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 155/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL  S V  + GR+H   N   T TGRLS
Sbjct: 519  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 578  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 638  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 675  MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 735  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLREMGARMLLQV 785


>gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Pelotomaculum thermopropionicum SI]
          Length = 882

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 106/292 (36%), Positives = 159/292 (54%), Gaps = 28/292 (9%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            +E   A +A++ + E   +  L S +   L  + ++ + G++H + +   T TGRLS+  
Sbjct: 566  EELAAAHEAVAKILEYRQMAKLKSTYADGL-AALINPETGKLHTTFHQTVTNTGRLSSSD 624

Query: 842  PNLQNQPA-LEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
            PNLQN P  LE  R  IR+ FI   P N L+ ADY Q+ELR+LAH++   +++ AFK G 
Sbjct: 625  PNLQNIPIRLEAGRL-IRKVFIPGRPENLLLTADYSQIELRVLAHISGDPALIKAFKNGE 683

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H+RTA  ++     AV   +V  E                   R +AK +NF I YG 
Sbjct: 684  DIHTRTAAEIF-----AVRPEEVTREM------------------RTRAKAVNFGIVYGL 720

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            +  GLARD KVS +EA++ ++ ++     V  + E   +E+R   +V TLL R R  P +
Sbjct: 721  SDFGLARDIKVSRQEARRYIENYFARYAGVKDYIERIIREARQKGYVTTLLNRRRYLPDL 780

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             S  R+ R+  ER A+NTP+QGSAAD+   AM+ I +      L  K++LQV
Sbjct: 781  FSPNRTIRSFGERTAMNTPIQGSAADIIKLAMVNIHRELAEHGLKAKMILQV 832


>gi|433654694|ref|YP_007298402.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum M0795]
 gi|433292883|gb|AGB18705.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum M0795]
          Length = 867

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 159/293 (54%), Gaps = 36/293 (12%)

Query: 792  ISALCEVCSIDSLISNFI-----LPLQGSNVSG------KNGRVHCSLNINTE-TGRLSA 839
            +  L E+   + ++   I     + L+ + + G      KN +VH +       TGR+S+
Sbjct: 550  MEVLVELIPYNEIVGEIIEYRQLMKLKSTYIDGFMPIMDKNDKVHSTFKQTVAATGRISS 609

Query: 840  RRPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
              PNLQN P  ++   +IR+AFI+   G  ++ ADY Q+ELR+LAHL+  + ++++F   
Sbjct: 610  TEPNLQNIPIRDEFGRRIRKAFISSFQGGYIVSADYSQIELRVLAHLSEDEKLIESFLNN 669

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H RTA  ++      V TG++                      RR+AK +NF I YG
Sbjct: 670  EDIHLRTASEVFKIAPEEV-TGEM----------------------RRRAKAVNFGIVYG 706

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GL+RD K+S +EAK+ +D +++  + V  + ++  K +R + +V T+L R R  P 
Sbjct: 707  ISDYGLSRDLKISRKEAKEYIDNYFDRYKGVKNYIDSVVKFARENGYVTTILNRRRYIPE 766

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            I S   +QR+  ER A+NTP+QGSAAD+   +M+++    + + L  KL+LQ+
Sbjct: 767  INSKNYNQRSFGERMAMNTPIQGSAADIIKMSMVKVYNELKSRSLKSKLILQI 819


>gi|381403373|ref|ZP_09928057.1| DNA polymerase I [Pantoea sp. Sc1]
 gi|380736572|gb|EIB97635.1| DNA polymerase I [Pantoea sp. Sc1]
          Length = 928

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/237 (39%), Positives = 128/237 (54%), Gaps = 24/237 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA  G  ++ ADY Q+EL
Sbjct: 651  TGRVHTSYHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFIADKGYRIVAADYSQIEL 710

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K +LDAF  G D H  TA  ++         G  L +  GE          
Sbjct: 711  RIMAHLSQDKGLLDAFAQGEDIHRATASEVF---------GVALDKVSGE---------- 751

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                +RR AK +NF + YG +  GL+R   +   EAKK +DL++     VL + E  ++ 
Sbjct: 752  ----QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQL 807

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            +    +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+   AM+ + +
Sbjct: 808  AANKGYVETLEGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIAVDE 864


>gi|386345469|ref|YP_006041633.1| DNA-directed DNA polymerase I [Streptococcus thermophilus JIM 8232]
 gi|339278930|emb|CCC20678.1| DNA-directed DNA polymerase I [Streptococcus thermophilus JIM 8232]
          Length = 879

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 161/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 831


>gi|441506550|ref|ZP_20988518.1| DNA polymerase I [Photobacterium sp. AK15]
 gi|441425756|gb|ELR63250.1| DNA polymerase I [Photobacterium sp. AK15]
          Length = 923

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/257 (36%), Positives = 140/257 (54%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+   GRVH S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++  DY 
Sbjct: 642  VNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPTGYKVLAVDYS 701

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K+++DAFK G D H+ TA  +      +V + Q              
Sbjct: 702  QIELRIMAHLSGDKALVDAFKHGKDIHAATAAEILGLPIESVTSEQ-------------- 747

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF + YG +  GLA+   +   EA++ +++++     VL + E+
Sbjct: 748  ---------RRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQEYMNVYFERYPGVLEYMES 798

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  +    +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+   AM+ + 
Sbjct: 799  TRTAASEQGYVETLFGRRLYLPDIKSRNGMRRKAAERAAINAPMQGTAADIIKRAMVMVD 858

Query: 1056 KNARLKELG-WKLLLQV 1071
            +    +E G  +LL+QV
Sbjct: 859  EWVEQQEPGRVRLLMQV 875


>gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
 gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
          Length = 928

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 138/256 (53%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+    R+H S +   T TGRLS+  PNLQN P   ++  KIRQAF+A PG  ++ ADY 
Sbjct: 648  VNATTRRLHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFVARPGYRIVAADYS 707

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +LDAF  G D H+ TA  ++    +AV          GE      
Sbjct: 708  QIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDAVS---------GE------ 752

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                    +RR AK +NF + YG +  GL R   +   +A+  +D +++    V  + E 
Sbjct: 753  --------QRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQTYIDRYFDRYPGVARFMER 804

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             + ++  D +V T+ GR    P I +  R++R   ER AIN P+QG+AAD+   AM+++ 
Sbjct: 805  IRAQAADDGYVETVFGRRLYLPEINAQNRTRRQAAERTAINAPMQGTAADIIKLAMIDVD 864

Query: 1056 KNARLKELGWKLLLQV 1071
            +  R  +    +++QV
Sbjct: 865  RWLREGDFDAWMVMQV 880


>gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 876

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 146/253 (57%), Gaps = 25/253 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLE 878
             G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+E
Sbjct: 599  TGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIE 658

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+A   ++++AF+ G D H++TAM+++ H+                        +
Sbjct: 659  LRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIF-HVSE----------------------E 695

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + +   +
Sbjct: 696  DVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQ 755

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++S   
Sbjct: 756  EAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLSVRL 815

Query: 1059 RLKELGWKLLLQV 1071
            R + L  +LLLQV
Sbjct: 816  REERLQARLLLQV 828


>gi|387910456|ref|YP_006340762.1| DNA polymerase I [Streptococcus thermophilus MN-ZLW-002]
 gi|387575391|gb|AFJ84097.1| DNA polymerase I [Streptococcus thermophilus MN-ZLW-002]
          Length = 879

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 161/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 831


>gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8]
 gi|62298349|sp|P52028.2|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth
            polymerase 1
 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8]
          Length = 834

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 155/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL  S V  + GR+H   N   T TGRLS
Sbjct: 519  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 578  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 638  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 675  MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 735  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLREMGARMLLQV 785


>gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99]
 gi|340789749|ref|YP_004755213.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99]
 gi|340558207|gb|AEK53445.1| DNA polymerase I [Brucella pinnipedialis B2/94]
          Length = 978

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 910  EDALAKENLAARMLLQV 926



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
          Length = 994

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 710  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 769

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 770  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 807

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 808  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 865

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 866  ATKAFAREHGYVETIFGRRTHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 925

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 926  EDALAKENLAARMLLQV 942



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 406 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 452

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 453 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 511

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 512 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 540

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 541 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 579

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 580 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 635

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 636 --GEKFTIGSPKQLGDILFGKMGLPGA 660


>gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2]
 gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2]
          Length = 978

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 910  EDALAKENLAARMLLQV 926



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           V A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 VLAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRLA------------ 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
          Length = 978

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRTHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 910  EDALAKENLAARMLLQV 926



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 126/327 (38%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+   + G   L                           E ++G   I+ KD+ G     
Sbjct: 496 DAGTGSHGMAPLS--------------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|444915846|ref|ZP_21235971.1| DNA polymerase I [Cystobacter fuscus DSM 2262]
 gi|444712840|gb|ELW53753.1| DNA polymerase I [Cystobacter fuscus DSM 2262]
          Length = 891

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/279 (35%), Positives = 149/279 (53%), Gaps = 26/279 (9%)

Query: 794  ALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEK 852
            A+ E  S+  L S ++  L    +  K+GR+H + +   T TGRLS+  PNLQN P   +
Sbjct: 590  AIIEYRSLSKLKSTYLDTL--PELVTKDGRLHTTFHQAATATGRLSSSDPNLQNIPIRTE 647

Query: 853  DRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 912
               +IR+AFIA  G+ L+ ADY Q+ELR+LAH+A  + +LDAF    D HSRTA  ++  
Sbjct: 648  LGMEIRRAFIADEGHQLVSADYSQIELRLLAHIAEDEVLLDAFARDEDIHSRTAAEVFG- 706

Query: 913  IRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSV 972
                                 VP  K+    +RR AKM+NF IAYG +P GL+    +  
Sbjct: 707  ---------------------VPQ-KEVTKDQRRVAKMVNFGIAYGLSPYGLSTRLNIPE 744

Query: 973  EEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIER 1032
            EEA+  ++ ++     +  + +   + +R   +V TL GR R    + +  R      ER
Sbjct: 745  EEARDIIERYFTRYAGIKRYLDETVRVARERGYVETLFGRRRPMGDLSAKNRQVVQAAER 804

Query: 1033 AAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AAIN P+QG+AAD+   AMLE+      ++L  ++LLQV
Sbjct: 805  AAINMPIQGTAADLMKKAMLEVDAALAREKLRTRMLLQV 843


>gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066]
 gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066]
          Length = 879

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 161/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKNKGYVSTLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 831


>gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330]
 gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
 gi|376275103|ref|YP_005115542.1| DNA polymerase I [Brucella canis HSK A52141]
 gi|376279825|ref|YP_005153831.1| DNA polymerase I [Brucella suis VBI22]
 gi|384223819|ref|YP_005614983.1| DNA polymerase I [Brucella suis 1330]
 gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330]
 gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
 gi|343381999|gb|AEM17491.1| DNA polymerase I [Brucella suis 1330]
 gi|358257424|gb|AEU05159.1| DNA polymerase I [Brucella suis VBI22]
 gi|363403670|gb|AEW13965.1| DNA polymerase I [Brucella canis HSK A52141]
          Length = 979

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 695  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 754

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 755  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 792

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 793  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 850

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 851  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 910

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 911  EDALAKENLAARMLLQV 927



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 391 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 437

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 438 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 496

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 497 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 525

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 526 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 564

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 565 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 620

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 621 --GEKFTIGSPKQLGDILFGKMGLPGA 645


>gi|337283070|ref|YP_004622541.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
            15912]
 gi|335370663|gb|AEH56613.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
            15912]
          Length = 881

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 157/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I S I  +  I  +Q + V G      ++G++H   +   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAFK
Sbjct: 622  SVDPNLQNIPVRLEQGRL-IRKAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFK 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         K+LLQV
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALEAGAYKTKMLLQV 833


>gi|448748354|ref|ZP_21729991.1| DNA polymerase 1 [Halomonas titanicae BH1]
 gi|445564056|gb|ELY20186.1| DNA polymerase 1 [Halomonas titanicae BH1]
          Length = 931

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 92/252 (36%), Positives = 137/252 (54%), Gaps = 24/252 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH S +   T TGRLS+  PNLQN P   ++  KIRQAFIA PG  ++ ADY Q+EL
Sbjct: 655  TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFIARPGYRIVAADYSQIEL 714

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K +L+AF  G D H+ TA  ++         G  L +  G+          
Sbjct: 715  RIMAHLSEDKGLLEAFAEGRDIHTATAAEVF---------GTSLDKVSGD---------- 755

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                +RR AK +NF + YG +  GL+R   +   +A+  +D +++    V  + E  + +
Sbjct: 756  ----QRRSAKAINFGLIYGMSAWGLSRQLHIERNQAQTYIDRYFDRYPGVARYMERIRSQ 811

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +  D  V T+LGR    P I+S  R++R   ER AIN P+QG+AAD+   AM+++     
Sbjct: 812  AGEDGFVETVLGRRLYLPEIQSQNRNRRQGAERTAINAPMQGTAADIIKQAMIDVDAWLA 871

Query: 1060 LKELGWKLLLQV 1071
              E    +++QV
Sbjct: 872  EGEFDALMVMQV 883


>gi|431412450|ref|ZP_19511885.1| DNA polymerase I [Enterococcus faecium E1630]
 gi|431759338|ref|ZP_19547952.1| DNA polymerase I [Enterococcus faecium E3346]
 gi|430589405|gb|ELB27533.1| DNA polymerase I [Enterococcus faecium E1630]
 gi|430626138|gb|ELB62724.1| DNA polymerase I [Enterococcus faecium E3346]
          Length = 881

 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 107/296 (36%), Positives = 157/296 (53%), Gaps = 36/296 (12%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P    +  KIRQAF+    + LI + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D H+ TAM ++                 G +K       D   + RR+AK +NF I Y
Sbjct: 682  GQDIHASTAMRVF-----------------GIEKA-----DDVTPNMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S + A++ +D ++ +   V  + E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKKYMERIVREAKDQGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             I S   + R+  ER AINTP+QGSAAD+   AM+E+ K  RLKE G +  +LLQV
Sbjct: 780  DINSRNYNIRSFAERTAINTPIQGSAADILKIAMIELDK--RLKETGLQATMLLQV 833


>gi|440225073|ref|YP_007332164.1| DNA-directed RNA polymerase I [Rhizobium tropici CIAT 899]
 gi|440036584|gb|AGB69618.1| DNA-directed RNA polymerase I [Rhizobium tropici CIAT 899]
          Length = 1010

 Score =  155 bits (393), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/261 (37%), Positives = 138/261 (52%), Gaps = 28/261 (10%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S V  +  RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ AD
Sbjct: 722  SYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLVSAD 781

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+   +  AF+ G D H+ TA  M+                       
Sbjct: 782  YSQIELRVLAHVADIPQLKQAFEDGIDIHAMTASEMF----------------------G 819

Query: 934  VPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTW 992
            VP+  D   SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  +
Sbjct: 820  VPV--DGMPSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDY 877

Query: 993  QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
             E  K+ +R   +V T+ GR   FP I+S   S R   ERA+IN P+QGSAADV   AM+
Sbjct: 878  MEGAKQAARDKGYVETIFGRRIHFPEIRSSNPSVRAFNERASINAPIQGSAADVIRRAMI 937

Query: 1053 EISKNARLKELG--WKLLLQV 1071
            ++        LG   ++LLQV
Sbjct: 938  KMEPALTAAGLGDRVRMLLQV 958



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 147/370 (39%), Gaps = 93/370 (25%)

Query: 327 NSEKLEILRSKLASF------YSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKID 380
            +E  ++ +++ ASF      +S  + + +++   +  W+   +   +V A DTE   +D
Sbjct: 365 TTEPEDLAKARAASFASAPIDHSKYVTIRDIATLDR--WIADARETGIV-AFDTETTSLD 421

Query: 381 VKQETPVDHGEVICFSIYSGPEADFGNGKS--CIWVDLLDGGG----------------R 422
           V Q       E++ FS+      +  +G S    +V L    G                R
Sbjct: 422 VMQ------AEIVGFSLAIADNRNDPSGSSIRAAYVPLAHKTGIGDLLGGGLADNQIPLR 475

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D L       ED SI K+  N  +D  +++ YG++   F  DTM ++ + D       G 
Sbjct: 476 DALARLKDLLEDASILKIAQNLKYDYLLMKRYGIETRSFD-DTMLLSYVLDGGANATHG- 533

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLKKDGSAGKIST 540
            +++L+                       E ++G   I+ KD+ G         +GK + 
Sbjct: 534 -MDSLS-----------------------ERWLGHKPIAYKDVAG---------SGKSNV 560

Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
              + ++ R       +Y+A D+  TL+L+  LK +L              + +   Y+ 
Sbjct: 561 TFDLVDIDRA-----TAYAAEDADVTLRLWLVLKPRL------------AAEKLSVVYER 603

Query: 601 YWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
             +P   +L  ME  G+ +DR+ LS +       Q AA      +   H    ++ N+GS
Sbjct: 604 LERPLVPVLAHMEERGITIDRQILSRLS--GELAQGAAALEDEIY---HLAGERF-NIGS 657

Query: 661 DTQLRQLLFG 670
             QL  +LFG
Sbjct: 658 PKQLGDILFG 667


>gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445]
 gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445]
          Length = 978

 Score =  155 bits (393), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 910  EDALAKENLAARMLLQV 926



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 130/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q      GE++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------GELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|404487040|ref|ZP_11022227.1| DNA polymerase I [Barnesiella intestinihominis YIT 11860]
 gi|404335536|gb|EJZ62005.1| DNA polymerase I [Barnesiella intestinihominis YIT 11860]
          Length = 926

 Score =  155 bits (393), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/273 (35%), Positives = 142/273 (52%), Gaps = 27/273 (9%)

Query: 801  IDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQ 859
            I  L+S +I  L    ++ K G++H S N   T TGRLS+  PNLQN P  + +  +IR+
Sbjct: 631  IRKLLSTYINALP-ELINPKTGKIHTSFNQTITSTGRLSSSNPNLQNIPIRDNEGREIRR 689

Query: 860  AFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVET 919
            AF+         ADY Q+ELRI+AHL+  + M++AF+ G D H+ TA  +Y         
Sbjct: 690  AFVPDKDCVFFSADYSQIELRIMAHLSGDRHMIEAFREGSDIHAATAAKIY--------- 740

Query: 920  GQVLLEWHGEDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKT 978
                       K P+    DA  ++ RRKAK  NF I YG +  GLA    +   EAK  
Sbjct: 741  -----------KVPI----DAVTADMRRKAKTANFGIIYGISVFGLAERLNIPRSEAKIL 785

Query: 979  VDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTP 1038
            +D ++    ++  +     + +R   +V T+ GR R  P I S     R + ER AIN P
Sbjct: 786  IDGYFESYPQIKEYMNKSIEVAREKGYVETICGRKRMLPDIHSHNSVVRGYAERNAINAP 845

Query: 1039 VQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +QGSAAD+   AM+ I+K    + L  +++LQV
Sbjct: 846  IQGSAADIIKIAMIRIAKRLENEHLRSRMILQV 878


>gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella inopinata BO1]
 gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella inopinata BO1]
          Length = 978

 Score =  155 bits (393), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 910  EDALAKENLAARMLLQV 926



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 128/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           V A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 VLAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRLA------------ 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   + S  QL  +LFG  G P +
Sbjct: 620 --GEKFTISSPKQLGDILFGKMGLPGA 644


>gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
 gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
          Length = 891

 Score =  155 bits (393), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 159/304 (52%), Gaps = 28/304 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N ++    ++     D I    ++  ++S     +  L    ++  +GR+H + 
Sbjct: 567  KTGYSTNAEVLEKLKDKHPIIDKIGEYRQIVKLNSTYVEGLTAL----INPIDGRIHSTF 622

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PNLQN P   +   ++R  F++     L+ ADY Q+ELR+LAH++ 
Sbjct: 623  NQTITTTGRISSTEPNLQNIPVRMEIGRRLRAVFVSDDEKRLVDADYSQVELRVLAHMSG 682

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M+DAFK G D H +TA  ++                       VP+ ++  +  R  
Sbjct: 683  DQNMIDAFKHGEDIHRKTASQVFN----------------------VPV-EEVTSELRSA 719

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGKT  GL+ D  + V +AK+ ++ ++ + +++  + +   + +  D +  
Sbjct: 720  AKAVNFGIIYGKTDFGLSEDLNIPVPQAKQYIESYFAKYEKIKEFMDNIIETAEKDGYSQ 779

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+  R R  P IKS    +RN  +RAA+N P+QGSAAD+   AM+ + +    +EL  KL
Sbjct: 780  TMFNRRRYIPEIKSKNFMERNRGKRAAMNAPIQGSAADIIKIAMVNVFRRLEKEELRSKL 839

Query: 1068 LLQV 1071
            +LQV
Sbjct: 840  ILQV 843


>gi|422021521|ref|ZP_16368033.1| DNA polymerase I [Providencia sneebia DSM 19967]
 gi|414099379|gb|EKT61022.1| DNA polymerase I [Providencia sneebia DSM 19967]
          Length = 928

 Score =  155 bits (393), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 137/256 (53%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +  K  RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  ++ ADY 
Sbjct: 648  IDPKTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEEGRRIRQAFIARKGYKVVAADYS 707

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +L+AF  G D H  TA  ++                       VP
Sbjct: 708  QIELRIMAHLSQDKGLLNAFAEGKDIHRATASEVF----------------------GVP 745

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             L +  + +RR AK +NF + YG +  GLAR   +   EA++ +DL++     VL + E 
Sbjct: 746  -LDEVTSDQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLRYMEN 804

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             + ++    +V TL GR    P IKS    +R   ER AIN P+QG+AAD+   AM+ + 
Sbjct: 805  TRHQAAEQGYVETLDGRRLYLPDIKSKNAIRRKAAEREAINAPMQGTAADIIKKAMIAVD 864

Query: 1056 KNARLKELGWKLLLQV 1071
               + ++    +L+QV
Sbjct: 865  SWLQTEKPAADMLMQV 880


>gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840]
 gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840]
          Length = 978

 Score =  155 bits (393), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 694  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 753

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 754  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 791

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 792  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 849

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 850  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 909

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 910  EDALAKENLAARMLLQV 926



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 390 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 436

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 437 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 495

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 496 DAG---TGRHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 524

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 525 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 563

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 564 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 619

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 620 --GEKFTIGSPKQLGDILFGKMGLPGA 644


>gi|385833838|ref|YP_005871613.1| DNA polymerase I [Lactococcus garvieae Lg2]
 gi|343182991|dbj|BAK61329.1| DNA polymerase I [Lactococcus garvieae Lg2]
          Length = 871

 Score =  155 bits (393), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 153/294 (52%), Gaps = 33/294 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L +   + + I  +  I  +Q + V G      ++GR+H   +   T+TGRLS
Sbjct: 553  AADILENLAQDYELVAKILEYRQISKIQSTYVQGLIPQIAEDGRIHTRYVQDLTQTGRLS 612

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P  LE  R  IR+AF+A   N L+ +DY Q+ELR+LAH++  + ++DAF  
Sbjct: 613  SIDPNLQNIPVRLEAGRL-IRKAFVAAENNILLSSDYSQIELRVLAHMSKDEHLIDAFNH 671

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++                   DKP     ++   ++RR AK +NF I+Y
Sbjct: 672  GADIHSSTAMRVF-----------------NIDKP-----ENVTPNDRRNAKAVNFGISY 709

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G+T  GLA+   +S +EA + +  ++     V  +    K+E++   +V T+  R R+ P
Sbjct: 710  GETEYGLAKRLSISNKEAAEMIQAYFERYPGVANYIAETKREAKDKGYVSTMFNRRRKLP 769

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             I +     R   ER AIN P+QGSA D+   AM+ +       +   KLLLQV
Sbjct: 770  EINNRNFMVRQGAERQAINAPIQGSAGDILKIAMINLDAALSEGKFKAKLLLQV 823


>gi|440751177|ref|ZP_20930412.1| DNA polymerase I [Mariniradius saccharolyticus AK6]
 gi|436480216|gb|ELP36468.1| DNA polymerase I [Mariniradius saccharolyticus AK6]
          Length = 938

 Score =  155 bits (393), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 159/304 (52%), Gaps = 29/304 (9%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
            G  A+  ++ +      E  DAI    E+  + S   +  LP   + ++ K GRVH + N
Sbjct: 614  GQYATGEEVLSKLAGEHEIADAILEYREMVKLKSTYVD-ALP---TMINPKTGRVHTTYN 669

Query: 830  -INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLAN 887
                 TGRLS+  PNLQN P       +IR+AF+    N +I+ ADY Q+ELR++A  + 
Sbjct: 670  QFVAATGRLSSINPNLQNIPIRTARGREIRKAFVPRDENHVILSADYSQIELRLMAAFSQ 729

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
              SML+AF+ G D H+ TA  ++          +V L+             D  +  RRK
Sbjct: 730  DASMLEAFQEGKDIHAATAAKIF----------KVSLD-------------DVNSDMRRK 766

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK  NF I YG +  GL++   +S  EAK+ +D ++ E   V T+ +   +++R D +V 
Sbjct: 767  AKTANFGIIYGISAFGLSQRLNISRTEAKEIIDAYFTEFPAVKTYMDNSIEKARKDEYVE 826

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+LGR R    I S   + R   ER AIN P+QGSAAD+   AM+++ +  + + L  K+
Sbjct: 827  TILGRRRYLRDINSRNMTMRGFAERNAINAPLQGSAADLIKVAMIDVHRWLKKENLKSKM 886

Query: 1068 LLQV 1071
            +LQV
Sbjct: 887  ILQV 890


>gi|408356302|ref|YP_006844833.1| DNA polymerase I [Amphibacillus xylanus NBRC 15112]
 gi|407727073|dbj|BAM47071.1| DNA polymerase I [Amphibacillus xylanus NBRC 15112]
          Length = 880

 Score =  155 bits (393), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 91/268 (33%), Positives = 151/268 (56%), Gaps = 31/268 (11%)

Query: 812  LQGSNVSG------KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
            LQ + + G       + ++H   N   T+TGRLS+  PNLQN P   ++  KIR+AFI  
Sbjct: 588  LQSTYIEGLLKVIHDDKKIHTRFNQALTQTGRLSSVDPNLQNIPIRLEEGRKIRKAFIPS 647

Query: 865  PGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              + +I+A DY Q+ELR+LAH+AN + +++AFK+  D H++TAM+++    + V++    
Sbjct: 648  ENDWIILAFDYSQIELRVLAHIANDEKLIEAFKSDRDIHTQTAMDVFNVTADEVDSLM-- 705

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                                 RR+AK +NF I YG +  GL+++ K++ +EA+  +D ++
Sbjct: 706  ---------------------RRQAKAVNFGIVYGISDYGLSQNLKITRKEAQAFIDQYF 744

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 V  + +    ++++D +V TL+ R R  P I S   +QR+  ER A+NTP+QGSA
Sbjct: 745  VSYPGVKQYMDDIVHKAKLDGYVTTLMNRRRYLPEITSRNFNQRSFAERTAMNTPIQGSA 804

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AD+   AM+++    +      +LLLQV
Sbjct: 805  ADIIKKAMIDLDHALKAGNFEARLLLQV 832


>gi|347522454|ref|YP_004780025.1| DNA polymerase I [Lactococcus garvieae ATCC 49156]
 gi|343181022|dbj|BAK59361.1| DNA polymerase I [Lactococcus garvieae ATCC 49156]
          Length = 871

 Score =  155 bits (393), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 153/294 (52%), Gaps = 33/294 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L +   + + I  +  I  +Q + V G      ++GR+H   +   T+TGRLS
Sbjct: 553  AADILENLAQDYELVAKILEYRQISKIQSTYVQGLIPQIAEDGRIHTRYVQDLTQTGRLS 612

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P  LE  R  IR+AF+A   N L+ +DY Q+ELR+LAH++  + ++DAF  
Sbjct: 613  SIDPNLQNIPVRLEAGRL-IRKAFVAAENNILLSSDYSQIELRVLAHMSKDEHLIDAFNH 671

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++                   DKP     ++   ++RR AK +NF I+Y
Sbjct: 672  GADIHSSTAMRVF-----------------NIDKP-----ENVTPNDRRNAKAVNFGISY 709

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G+T  GLA+   +S +EA + +  ++     V  +    K+E++   +V T+  R R+ P
Sbjct: 710  GETEYGLAKRLSISNKEAAEMIQAYFERYPGVANYIAETKREAKDKGYVSTMFNRRRKLP 769

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             I +     R   ER AIN P+QGSA D+   AM+ +       +   KLLLQV
Sbjct: 770  EINNRNFMVRQGAERQAINAPIQGSAGDILKIAMINLDAALSEGKFKAKLLLQV 823


>gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
 gi|260620957|gb|EEX43828.1| DNA-directed DNA polymerase [Bacteroides finegoldii DSM 17565]
          Length = 930

 Score =  155 bits (393), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 154/305 (50%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+       +  + E   +  L+  +I  L    ++ + GRVH S N   T 
Sbjct: 609  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 667

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 668  TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 727

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +  D H+ TA  +Y       + G                LK+  +  RRKAK  NF
Sbjct: 728  AFLSNHDIHAATAAKIY-------KIG----------------LKEVDSDMRRKAKTANF 764

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++     V  + +   + ++   +V T+  R 
Sbjct: 765  GIIYGISVFGLAERMNVERKEAKELIDGYFETYPGVKAYMDQSIRVAQEKGYVETIFHRK 824

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  R + +  K++LQV  
Sbjct: 825  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFRAEGIKTKMILQVHD 884

Query: 1074 FFSFS 1078
              +FS
Sbjct: 885  ELNFS 889



 Score = 43.9 bits (102), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++NEF P FE+ S  KV  N  +D  VL+NYG++V G   DTM
Sbjct: 403 IVNEFRPVFENESSLKVGQNIKYDMIVLQNYGVEVKGPLFDTM 445


>gi|438002755|ref|YP_007272498.1| DNA polymerase I [Tepidanaerobacter acetatoxydans Re1]
 gi|432179549|emb|CCP26522.1| DNA polymerase I [Tepidanaerobacter acetatoxydans Re1]
          Length = 462

 Score =  155 bits (393), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 95/260 (36%), Positives = 138/260 (53%), Gaps = 31/260 (11%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADY 874
            V  K GR++ S N   T TGR+S+  PNLQN P   ++   IR  F +  PG+ L+  DY
Sbjct: 182  VDKKTGRIYTSFNQTVTSTGRISSTEPNLQNIPVKTEEGKHIRGVFTSDGPGHVLLSGDY 241

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP- 933
             Q+ELR+LAH++    +++AF +G D H RTA  ++                     PP 
Sbjct: 242  SQIELRVLAHMSQDPGLIEAFVSGEDIHRRTASEVF-------------------GVPPE 282

Query: 934  --VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLT 991
               PLL+D       KAK +NF I YG +  GLA++  +S +EAK+ +D ++     V  
Sbjct: 283  EVTPLLRD-------KAKAVNFGIIYGISDYGLAQNLGISNQEAKEYIDAYFARYPGVRD 335

Query: 992  WQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAM 1051
            +     + ++   +V TLL R R  P I S     R+  ER A+NTP+QGSAAD+   AM
Sbjct: 336  YIRETIRSAKALGYVTTLLNRRRYIPDINSRNYHLRSFAERTAVNTPIQGSAADIIKIAM 395

Query: 1052 LEISKNARLKELGWKLLLQV 1071
            +++  N R   L  K+LLQV
Sbjct: 396  VKVHDNLRQNNLKAKILLQV 415


>gi|392379948|ref|YP_004987106.1| DNA polymerase I (POL I) [Azospirillum brasilense Sp245]
 gi|356882315|emb|CCD03321.1| DNA polymerase I (POL I) [Azospirillum brasilense Sp245]
          Length = 955

 Score =  155 bits (393), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 101/265 (38%), Positives = 139/265 (52%), Gaps = 32/265 (12%)

Query: 812  LQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            LQ   V G   RVH +  +  T TGRLS+  PNLQN P   ++  KIR+AF+A PG+ LI
Sbjct: 670  LQAQIVEGSE-RVHTAFAMAATNTGRLSSTDPNLQNIPVRTEEGRKIRRAFVAAPGHKLI 728

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
              DY Q+ELR++A +A+  ++  AF+ G D H+ TA  ++                    
Sbjct: 729  SIDYSQIELRLVAEMADIAALKQAFQDGIDIHAATASQVFG------------------- 769

Query: 931  KPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV 989
               VPL  D   SE RRKAK +NF I YG +  GL R   ++  EA   +  ++    E+
Sbjct: 770  ---VPL--DQMTSEIRRKAKAINFGIIYGISGFGLGRQLGIAPGEANAFIKAYFERFHEL 824

Query: 990  LTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMC 1049
              W EA K  +R + HV TL GR    P I     ++R   ER AIN P+QG+AAD+   
Sbjct: 825  KLWMEATKAFARQNGHVVTLFGRRCYIPGIHDKNAARRAFAERQAINAPIQGTAADIMKR 884

Query: 1050 AMLEISKNARLKELGW---KLLLQV 1071
            AM  +     LKE G+   ++LLQV
Sbjct: 885  AMARVP--GALKEAGFDEVRMLLQV 907



 Score = 60.1 bits (144), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 98/247 (39%), Gaps = 57/247 (23%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D L       EDP+I K+ HN+ FD+ +   +G++VS    D+M ++ + +      G  
Sbjct: 427 DALKALKEVLEDPAILKIGHNFKFDHQLFARHGVRVSPVD-DSMLISYVLEGGAHGHGMD 485

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
            L  L      ++     Y++    G            +  F R  L K           
Sbjct: 486 ELAELH-----LAHTTIPYKEVCGTGKN----------QITFDRVPLDK----------- 519

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
                        ++Y+A D+  TL+L+++LK +L++            + M   Y+   
Sbjct: 520 ------------ALAYAAEDADITLRLWRALKPRLVD------------ERMVTVYETLE 555

Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
           +P   ++  ME+ G+ VDR  L      AR  Q+ AV         H    +  N+GS  
Sbjct: 556 RPLVPVIADMESCGIRVDRAAL------ARLSQDLAVRMAEIEKEVHQHAGRSFNIGSPK 609

Query: 663 QLRQLLF 669
           QL ++LF
Sbjct: 610 QLGEILF 616


>gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004]
 gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
            3'->5' polymerase; 3'->5' exonuclease (C-terminal)
            [Xenorhabdus bovienii SS-2004]
          Length = 932

 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/250 (36%), Positives = 136/250 (54%), Gaps = 24/250 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S +   T TGRLS+R PNLQN P    +  +IRQAFIA  G  ++ ADY Q+ELRI
Sbjct: 658  RVHTSYHQAVTATGRLSSRDPNLQNIPVRNDEGRRIRQAFIAPEGYCIMAADYSQIELRI 717

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            +AHL+  K +L+AF  G D HS TA  ++                       VP L++  
Sbjct: 718  MAHLSQDKGLLEAFAQGKDIHSATAAEVF----------------------GVP-LEEVT 754

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
            + +RR AK +NF + YG +  GL+R   +   EA++ +DL++     VL + E  ++++ 
Sbjct: 755  SEQRRSAKAINFGLIYGMSAFGLSRQLSIPRGEAQRYMDLYFERYPGVLAYMERTRQQAA 814

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
                V TL GR    P IKS    +R   ER AIN P+QG+AAD+   AM+ +      +
Sbjct: 815  EHGFVETLEGRRLYLPDIKSRNAMRRKASEREAINAPMQGTAADIIKLAMIAVDNWIVSE 874

Query: 1062 ELGWKLLLQV 1071
            +   ++++QV
Sbjct: 875  QPNVRMIMQV 884


>gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
 gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
          Length = 934

 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 149/288 (51%), Gaps = 32/288 (11%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCS 827
            GA ++N ++ A   E          L E   +  L S +   LPL  + +SG   RVH S
Sbjct: 610  GAASTNEEVLA---ELALDYPLPKVLLEYRGLAKLKSTYTDKLPLMINPISG---RVHTS 663

Query: 828  LN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLA 886
             +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL+
Sbjct: 664  YHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPAGYCILAADYSQIELRIMAHLS 723

Query: 887  NCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERR 946
              K +L AF  G D H  TA  ++                       +P L++    +RR
Sbjct: 724  QDKGLLAAFAEGKDIHRATAAEVF----------------------GLP-LENVTTEQRR 760

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
             AK +NF + YG +  GLAR   +   EA++ +DL++     VL + E  +K++    +V
Sbjct: 761  SAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYV 820

Query: 1007 HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             TL GR    P I S   ++R   ER AIN P+QG+AAD+   AM+ +
Sbjct: 821  TTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAV 868


>gi|383776752|ref|YP_005461318.1| putative DNA polymerase I [Actinoplanes missouriensis 431]
 gi|381369984|dbj|BAL86802.1| putative DNA polymerase I [Actinoplanes missouriensis 431]
          Length = 897

 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/253 (34%), Positives = 139/253 (54%), Gaps = 25/253 (9%)

Query: 821  NGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GR+H + N     TGRLS+  PNLQN P   ++  +IR+AF+  PG   L+ ADY Q+E
Sbjct: 619  DGRIHTTFNQTVAATGRLSSTDPNLQNIPIRTEEGRRIRRAFVVGPGLEQLMTADYSQIE 678

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AHL+   +++ AF +G DFH+ TA +++ H+                       L 
Sbjct: 679  MRIMAHLSGDDALIAAFNSGADFHAATASSVF-HVG----------------------LD 715

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            +    +RRK K +N+ +AYG +  GL+    +S EEA+  ++ ++     V  + +A   
Sbjct: 716  EVTPDQRRKIKAMNYGLAYGLSAFGLSNQLTISTEEARGLMEEYFERFGGVRDYLQAVVT 775

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++  D +  T+LGR R  P + S  R +R   +R A+N P+QGSAAD+   AML + +  
Sbjct: 776  QAGKDGYTATILGRRRYLPDLLSDNRQRREMAQRMALNAPIQGSAADIIKIAMLRVDEAL 835

Query: 1059 RLKELGWKLLLQV 1071
            R   L  K+LLQV
Sbjct: 836  RDSGLASKMLLQV 848


>gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici]
          Length = 878

 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 151/259 (58%), Gaps = 29/259 (11%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  ADY
Sbjct: 597  VHHDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 657  SQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIF-HVSE------------------- 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 697  ---EEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  NIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKE--LGWKLLLQV 1071
            +  ARLKE  L  +LLLQV
Sbjct: 814  A--ARLKEERLQARLLLQV 830


>gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
 gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
          Length = 932

 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/288 (36%), Positives = 147/288 (51%), Gaps = 32/288 (11%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCS 827
            GA ++N ++ A   E          + E   +  L S +   LPL  + VSG   RVH S
Sbjct: 608  GAASTNEEVLA---ELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSG---RVHTS 661

Query: 828  LN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLA 886
             +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL+
Sbjct: 662  YHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLS 721

Query: 887  NCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERR 946
              + +L AF AG D H  TA  ++      V T Q                       RR
Sbjct: 722  QDEGLLAAFAAGKDIHRATAAEVFGLPLEKVTTEQ-----------------------RR 758

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
             AK +NF + YG +  GLAR   +   EA++ +DL++     VL + E  +K++    +V
Sbjct: 759  SAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYV 818

Query: 1007 HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             TL GR    P I S   ++R   ER AIN P+QG+AAD+   AM+ +
Sbjct: 819  TTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAV 866


>gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
 gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
          Length = 918

 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/247 (37%), Positives = 129/247 (52%), Gaps = 27/247 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ + GRVH S +  N  TGRLS+  PNLQN P   ++  +IR AFIA  G  
Sbjct: 633  LPLM---VNAQTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGKK 689

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF  G D H  TA  ++    + V T Q       
Sbjct: 690  ILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFSEVTTDQ------- 742

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR+AK +NF + YG +  GLA+   +   EA+  +D ++     
Sbjct: 743  ----------------RRRAKAVNFGLIYGMSAFGLAKQLDIPRSEAQSYIDTYFKRYPG 786

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +  +    +V TL GR    PAIK     +R   ERAAIN P+QG+AAD+  
Sbjct: 787  VLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIK 846

Query: 1049 CAMLEIS 1055
             AM+ I+
Sbjct: 847  KAMINIA 853


>gi|420143403|ref|ZP_14650902.1| DNA polymerase I [Lactococcus garvieae IPLA 31405]
 gi|391856671|gb|EIT67209.1| DNA polymerase I [Lactococcus garvieae IPLA 31405]
          Length = 871

 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 153/294 (52%), Gaps = 33/294 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L +   + + I  +  I  +Q + V G      ++GR+H   +   T+TGRLS
Sbjct: 553  AADILENLAQDYELVAKILEYRQISKIQSTYVQGLIPQIAEDGRIHTRYVQDLTQTGRLS 612

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P  LE  R  IR+AF+A   N L+ +DY Q+ELR+LAH++  + ++DAF  
Sbjct: 613  SIDPNLQNIPVRLEAGRL-IRKAFVAAENNVLLSSDYSQIELRVLAHMSKDEHLIDAFNH 671

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++                   DKP     ++   ++RR AK +NF I+Y
Sbjct: 672  GADIHSSTAMRVF-----------------NIDKP-----ENVTPNDRRNAKAVNFGISY 709

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G+T  GLA+   +S +EA + +  ++     V  +    K+E++   +V T+  R R+ P
Sbjct: 710  GETEYGLAKRLSISNKEAAEMIQAYFERYPGVANYIAETKREAKDKGYVSTMFNRRRKLP 769

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             I +     R   ER AIN P+QGSA D+   AM+ +       +   KLLLQV
Sbjct: 770  EINNRNFMVRQGAERQAINAPIQGSAGDILKIAMINLDAALSEGKFKAKLLLQV 823


>gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903]
 gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903]
          Length = 881

 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 157/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I S I  +  I  +Q + V G      ++G++H   +   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAFK
Sbjct: 622  SVDPNLQNIPVRLEQGRL-IRKAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFK 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         K+LLQV
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALERGAYKTKMLLQV 833


>gi|424916040|ref|ZP_18339404.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM597]
 gi|392852216|gb|EJB04737.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM597]
          Length = 999

 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 137/260 (52%), Gaps = 30/260 (11%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  +  RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY 
Sbjct: 713  VHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 772

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF+ G D H+ TA  M+         G  +    GE      
Sbjct: 773  QIELRVLAHVADIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------ 817

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+
Sbjct: 818  --------VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMES 869

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            RK  +R   +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM+ + 
Sbjct: 870  RKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIRME 929

Query: 1056 KNARLKELGW----KLLLQV 1071
                L E+G     ++LLQV
Sbjct: 930  PA--LAEVGLGDRVRMLLQV 947



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 71/256 (27%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED ++ KV  N  +D  +++ YG++   F  DTM ++ + D+     G 
Sbjct: 465 RDALPRLKSLLEDAAVLKVAQNLKYDYLLMQRYGIETRSFD-DTMLISYVLDAG---TGA 520

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 548

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 549 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 591

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
              +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++         
Sbjct: 592 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 642

Query: 655 YMNVGSDTQLRQLLFG 670
             N+GS  QL  +LFG
Sbjct: 643 --NIGSPKQLGDILFG 656


>gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
            str. OVINE]
 gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
            str. OVINE]
          Length = 952

 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 157/306 (51%), Gaps = 32/306 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   ++ A++       L E   +  L S +   LP     ++ K GRVH 
Sbjct: 628  KGAPSTNEEVL--DELAQQGHLVPKLLMEHRGLSKLKSTYTDKLP---QLINKKTGRVHT 682

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S N   T TGRLS+  PNLQN P   ++  +IRQAF+A  G  ++ ADY Q+ELRI+AHL
Sbjct: 683  SYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMAHL 742

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +N + M++AF  G D H  TA  ++      VE G+V  E                  +R
Sbjct: 743  SNDEGMINAFAEGKDIHRATAAEIF-----GVELGEVTSE------------------QR 779

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +   EA+K +DL++     V  +    ++ +    +
Sbjct: 780  RSAKAINFGLIYGMSSFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGY 839

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TL GR    P IKS     R   ER AIN P+QG+AAD+   AM+ I    R  +   
Sbjct: 840  VETLFGRRLYLPDIKSGNAILRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDND-EI 898

Query: 1066 KLLLQV 1071
            K+++QV
Sbjct: 899  KMIMQV 904


>gi|424788632|ref|ZP_18215383.1| DNA polymerase I family protein [Streptococcus intermedius BA1]
 gi|422112617|gb|EKU16400.1| DNA polymerase I family protein [Streptococcus intermedius BA1]
          Length = 881

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 157/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  K +++AF+
Sbjct: 622  SVDPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDKHLIEAFR 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         ++LLQV
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALLAGRFKSRMLLQV 833


>gi|380693094|ref|ZP_09857953.1| DNA polymerase I [Bacteroides faecis MAJ27]
          Length = 949

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 154/305 (50%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+       +  + E   +  L+  +I  L    ++ + GRVH S N   T 
Sbjct: 628  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTS 686

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 687  TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +  D H+ TA  +Y      ++                  LKD  +  RRKAK  NF
Sbjct: 747  AFLSNHDIHAATAAKIY-----KID------------------LKDVDSDMRRKAKTANF 783

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++     V  + +   + ++   +V T+  R 
Sbjct: 784  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPSVKAYMDKSIQVAQEKGYVETIFHRK 843

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + +  K++LQV  
Sbjct: 844  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHD 903

Query: 1074 FFSFS 1078
              +FS
Sbjct: 904  ELNFS 908



 Score = 44.7 bits (104), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++NEF P FE+ +  KV  N  +D  VLENYG++V G   DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDTM 464


>gi|387878650|ref|YP_006308953.1| DNA polymerase I [Streptococcus parasanguinis FW213]
 gi|386792107|gb|AFJ25142.1| DNA polymerase I [Streptococcus parasanguinis FW213]
          Length = 894

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 157/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I S I  +  I  +Q + V G      ++G++H   +   T+TGRLS
Sbjct: 575  AVDVLGRLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQDLTQTGRLS 634

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAFK
Sbjct: 635  SVDPNLQNIPVRLEQGRL-IRKAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFK 693

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   +KP     +D   ++RR AK +NF + 
Sbjct: 694  HGADIHTSTAMRVF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVV 731

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  
Sbjct: 732  YGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREI 791

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         K+LLQV
Sbjct: 792  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALERGAYKTKMLLQV 846


>gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150]
 gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150]
          Length = 879

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 161/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ ++ ++     +  + E   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYINTYFERYPGIKAYMENVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 831


>gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
 gi|452743761|ref|ZP_21943621.1| DNA polymerase I [Mannheimia haemolytica serotype 6 str. H23]
 gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
 gi|452088205|gb|EME04568.1| DNA polymerase I [Mannheimia haemolytica serotype 6 str. H23]
          Length = 952

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 157/306 (51%), Gaps = 32/306 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   ++ A++       L E   +  L S +   LP     ++ K GRVH 
Sbjct: 628  KGAPSTNEEVL--DELAQQGHLVPKLLMEHRGLSKLKSTYTDKLP---QLINKKTGRVHT 682

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S N   T TGRLS+  PNLQN P   ++  +IRQAF+A  G  ++ ADY Q+ELRI+AHL
Sbjct: 683  SYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMAHL 742

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +N + M++AF  G D H  TA  ++      VE G+V  E                  +R
Sbjct: 743  SNDEGMINAFAEGKDIHRATAAEIF-----GVELGEVTSE------------------QR 779

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +   EA+K +DL++     V  +    ++ +    +
Sbjct: 780  RSAKAINFGLIYGMSSFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGY 839

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TL GR    P IKS     R   ER AIN P+QG+AAD+   AM+ I    R  +   
Sbjct: 840  VETLFGRRLYLPDIKSGNAILRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDND-EI 898

Query: 1066 KLLLQV 1071
            K+++QV
Sbjct: 899  KMIMQV 904


>gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
            str. BOVINE]
 gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
            str. BOVINE]
          Length = 952

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 157/306 (51%), Gaps = 32/306 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   ++ A++       L E   +  L S +   LP     ++ K GRVH 
Sbjct: 628  KGAPSTNEEVL--DELAQQGHLVPKLLMEHRGLSKLKSTYTDKLP---QLINKKTGRVHT 682

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S N   T TGRLS+  PNLQN P   ++  +IRQAF+A  G  ++ ADY Q+ELRI+AHL
Sbjct: 683  SYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMAHL 742

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +N + M++AF  G D H  TA  ++      VE G+V  E                  +R
Sbjct: 743  SNDEGMINAFAEGKDIHRATAAEIF-----GVELGEVTSE------------------QR 779

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +   EA+K +DL++     V  +    ++ +    +
Sbjct: 780  RSAKAINFGLIYGMSSFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGY 839

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TL GR    P IKS     R   ER AIN P+QG+AAD+   AM+ I    R  +   
Sbjct: 840  VETLFGRRLYLPDIKSGNAILRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDND-EI 898

Query: 1066 KLLLQV 1071
            K+++QV
Sbjct: 899  KMIMQV 904


>gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
 gi|158446788|gb|EDP23783.1| DNA-directed DNA polymerase [Parvimonas micra ATCC 33270]
          Length = 888

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 156/298 (52%), Gaps = 30/298 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTE 833
            ++T+ E  E      + +  + +  S++ LIS ++  +    +   +GRV  S   + T 
Sbjct: 568  YSTDVEVLEKLSKKHEIVDYILKYRSLNKLISTYLDGILEYIMD--DGRVRTSFKQMITA 625

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P   ++   IR+ F+A      I ADY Q+ELR+LAHL+    M+D
Sbjct: 626  TGRLSSVDPNLQNIPIRSEEGKNIRKVFVADKNKVFIDADYSQIELRVLAHLSKDSVMID 685

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            +FK   D H +TA  ++    N V   Q                       RR AK +NF
Sbjct: 686  SFKNDLDIHYKTASEVFGVPINEVTDNQ-----------------------RRSAKAVNF 722

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GL++D  ++  EA++ +D + N    + ++ E    +++ D  V T+L R 
Sbjct: 723  GIVYGISDYGLSKDLNITRNEARQYIDGYLNTYPSIKSYMEEIVNKAKKDGFVTTILDRK 782

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++ +  +++++  KL+LQ+
Sbjct: 783  RYIPEINSKNFNIRSFGERIALNTPIQGSAADIIKLAMIKVYERLKIEKVNAKLILQI 840


>gi|420142663|ref|ZP_14650253.1| DNA polymerase I [Pseudomonas aeruginosa CIG1]
 gi|403244573|gb|EJY58439.1| DNA polymerase I [Pseudomonas aeruginosa CIG1]
          Length = 913

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/277 (34%), Positives = 139/277 (50%), Gaps = 24/277 (8%)

Query: 816  NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
             ++ + GR+H S +     TGRLS+  PNLQN P    +  +IRQAF+A PG  L+ ADY
Sbjct: 632  QINPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPPGYKLLAADY 691

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRI+AHLA    +LDAF+   D H  TA  ++                       V
Sbjct: 692  SQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFG----------------------V 729

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PL +D    +RR AK +NF + YG +  GLA+   V  +EA+  +D ++     VL + E
Sbjct: 730  PL-EDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEAQAYIDRYFARYPGVLAYME 788

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              + ++     V TL GR    P I S   + R   ER AIN P+QG+AAD+   AM+ +
Sbjct: 789  RTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAINAPMQGTAADIMKRAMVAV 848

Query: 1055 SKNARLKELGWKLLLQVLFFFSFSFFSIIVIVSCQGI 1091
                +   L  +++LQV           +V   C+GI
Sbjct: 849  DNWLQESGLDARVILQVHDELVLEVREELVEQVCEGI 885


>gi|289166948|ref|YP_003445215.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
 gi|288906513|emb|CBJ21345.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
          Length = 877

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 159/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWENSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P     +D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----EDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5]
 gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5]
          Length = 909

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/253 (35%), Positives = 140/253 (55%), Gaps = 25/253 (9%)

Query: 821  NGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GR+H + N     TGRLS+  PNLQN P   ++  +IR+AF+   G   L+ ADY Q+E
Sbjct: 631  DGRIHTTFNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGEGYECLLTADYSQIE 690

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AHL++  ++++AF +G DFH+ TA +++      VE G                  
Sbjct: 691  MRIMAHLSSDDALIEAFNSGHDFHAATASSVF-----TVEVG------------------ 727

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D  A +RRK K +N+ +AYG +  GL++   +S EEA+  ++ ++     V  + +    
Sbjct: 728  DVTADQRRKIKAMNYGLAYGLSAFGLSQQLGISAEEARGLMENYFAGFGGVRDYLQEVVA 787

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R D +  T+LGR R  P + S  R +R   ER A+N P+QGSAAD+   AML +    
Sbjct: 788  RARQDGYTSTILGRRRYLPDLVSDNRQRREMAERMALNAPIQGSAADIIKVAMLHVDSAL 847

Query: 1059 RLKELGWKLLLQV 1071
            R   L  ++LLQV
Sbjct: 848  RDAGLRSRMLLQV 860


>gi|419707636|ref|ZP_14235118.1| DNA polymerase I [Streptococcus salivarius PS4]
 gi|383282636|gb|EIC80618.1| DNA polymerase I [Streptococcus salivarius PS4]
          Length = 879

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 161/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ ++ ++     +  + E   +E++   +V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYINTYFERYPGIKAYMENVVREAKDKGYVETLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 831


>gi|422844108|ref|ZP_16890818.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp.
            lactis DSM 20072]
 gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp.
            lactis DSM 20072]
          Length = 889

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 160/292 (54%), Gaps = 29/292 (9%)

Query: 784  EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRP 842
            + +E    +S + E   I  + S ++  L    +  ++GR+H   L   T TGRLS+  P
Sbjct: 575  QLKEQSPVVSDILEYRQISKIQSTYVKGLLDV-IDKRDGRIHTRYLQTLTATGRLSSVDP 633

Query: 843  NLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            NLQN PA  ++  +IR+AF+ + P   +   DY Q+ELR+LAH++   +M +AFK G D 
Sbjct: 634  NLQNIPARTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDI 693

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TAM ++ H+ +  E   +                     +RR+AK +NF I YG + 
Sbjct: 694  HAHTAMKIF-HLSSVDEVTSL---------------------QRRRAKAVNFGIVYGISD 731

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GL+++  +S ++AK+ +D ++ +   +  + +   K++R   +  T++ R R  P I +
Sbjct: 732  YGLSKNLDISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMHRRRYLPDIHA 791

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
               + R+  ER AIN+P+QGSAAD+   AM+ + K  +L ELG   K+++QV
Sbjct: 792  KNFNVRSFAERTAINSPIQGSAADIMKIAMINMQK--KLDELGLKTKMVVQV 841


>gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|420260959|ref|ZP_14763621.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
            WA-314]
 gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|404511594|gb|EKA25467.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
            WA-314]
          Length = 932

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/246 (39%), Positives = 134/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYR 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF AG D H  TA  ++         G  L +   
Sbjct: 704  IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVF---------GLSLEKVTN 754

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 755  E--------------QRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 801  VLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 861  RAMIAV 866


>gi|349702017|ref|ZP_08903646.1| DNA polymerase I [Gluconacetobacter europaeus LMG 18494]
          Length = 924

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 136/258 (52%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + ++   GRVH S  +  T TGRLS+  PNLQN P   ++  +IR+AF+A PGN L+ AD
Sbjct: 642  NQINPATGRVHTSFQMAVTTTGRLSSNDPNLQNIPIRTEEGGRIRRAFVAAPGNVLVSAD 701

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LA +A+  ++ +AF  G D H+RTA  ++             +   G D   
Sbjct: 702  YSQIELRLLADVADIPALREAFALGQDIHARTASEVFG------------IPIEGMD--- 746

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             PL        RR+AK +NF I YG +  GL R   +   EA+  +D ++     +  + 
Sbjct: 747  -PL-------TRRRAKAINFGIIYGISAFGLGRQLGIPPGEARGYIDAYFARYPGIRDYM 798

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K E+R   +V T  GR    P I   +  +RN+ ER AIN P+QG AAD+   AM+ 
Sbjct: 799  ERVKAEARAKGYVTTPFGRRCWVPGIGDKSAVRRNYAERQAINAPLQGGAADIIKRAMVR 858

Query: 1054 ISKNARLKELGWKLLLQV 1071
            I        L  ++LLQV
Sbjct: 859  IPAALSDAGLDGRMLLQV 876


>gi|339022112|ref|ZP_08646080.1| DNA polymerase I [Acetobacter tropicalis NBRC 101654]
 gi|338750882|dbj|GAA09384.1| DNA polymerase I [Acetobacter tropicalis NBRC 101654]
          Length = 950

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/250 (36%), Positives = 135/250 (54%), Gaps = 24/250 (9%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  +  T TGRLS+  PNLQN P   ++  +IRQAFIA  G  L+ ADY Q+ELR+
Sbjct: 676  RVHTSFQMAITTTGRLSSNEPNLQNIPIRTEEGGRIRQAFIAPKGKKLVSADYSQIELRL 735

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LA +AN  ++ +AF  G D H+RTA  ++                       VPL +   
Sbjct: 736  LADVANIPALREAFALGQDIHARTASEVFG----------------------VPL-EGMD 772

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
            A  RR+AK +NF I YG +  GL R   +   EA+  +D ++     +  + E  ++E+R
Sbjct: 773  ALTRRRAKAINFGIIYGISAFGLGRQLGIPAGEARSYIDAYFARYPGIRDYMERMREEAR 832

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
            +  +V T  GR    P I+  + ++R + ER AIN P+QG AAD+   AM+ + +  +  
Sbjct: 833  LHGYVLTPFGRRCYVPGIQEKSAARRQYAERQAINAPLQGGAADIIKRAMVRLPRALKDA 892

Query: 1062 ELGWKLLLQV 1071
             L  ++LLQV
Sbjct: 893  GLSARMLLQV 902


>gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL]
 gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL]
          Length = 850

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 143/261 (54%), Gaps = 26/261 (9%)

Query: 812  LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            LQ  N S   GRVH + +   T TGRL++  PNLQN P    +   IR+ FI   G+ LI
Sbjct: 567  LQAINPSS--GRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGRLIRKVFIPEEGHVLI 624

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
             ADY Q+ELRILAH++  + +++AFK   D HS+TA  ++                 G D
Sbjct: 625  DADYSQIELRILAHISEDERLINAFKNNVDIHSQTAAEIF-----------------GVD 667

Query: 931  KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
                  + D     R +AK +NF I YG +  GLARD K+S +EA + ++ ++    +V 
Sbjct: 668  ------IDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKVK 721

Query: 991  TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
             + +   K +R + +V TL  R R    I S  R+ R++ ER A+N+P+QGSAAD+   A
Sbjct: 722  EYLDNIVKFARENGYVLTLFNRKRYIKDINSTNRNTRSYAERIAMNSPIQGSAADIMKLA 781

Query: 1051 MLEISKNARLKELGWKLLLQV 1071
            M+++ +  +   L  K++LQV
Sbjct: 782  MIKVYQKLKENNLKAKIILQV 802


>gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus]
          Length = 834

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL  S V  + GR+H   N   T TGRLS
Sbjct: 519  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 578  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 638  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 675  MSAHRLSQELSIPYEEASAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+++G ++LLQV
Sbjct: 735  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLRQMGARMLLQV 785


>gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium extorquens CM4]
 gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium extorquens CM4]
          Length = 1047

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 147/291 (50%), Gaps = 25/291 (8%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
            E+ A+   D    +     +  L S +   LQ     G N RVH S  +  T TGRLS+ 
Sbjct: 729  EELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTN-RVHTSFALAATTTGRLSSS 787

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
             PNLQN P   ++  +IR+AF+A  G  LI ADY Q+ELR+LAH+A+   + +AF+ G D
Sbjct: 788  DPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGID 847

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  M+         G  L +  G+               RR+AK +NF I YG +
Sbjct: 848  IHAATASAMF---------GVALDQMTGD--------------LRRRAKTINFGIIYGIS 884

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLA    +  EEA   +  ++     +  + +  K+  R   +V TL GR   +P I+
Sbjct: 885  AFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIR 944

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            S   S+R  +ER AIN P+QG+AAD+   AM  +      K+L  ++LLQV
Sbjct: 945  SNNPSERASVERQAINAPIQGTAADIIRRAMTRMEDALEAKKLTARMLLQV 995


>gi|410696876|gb|AFV75944.1| DNA polymerase I [Thermus oshimai JL-2]
          Length = 830

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 158/316 (50%), Gaps = 33/316 (10%)

Query: 757  LDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSN 816
            L   G TE+T  +   A+  ++       REA   +  + E   +  L S +I PL    
Sbjct: 498  LPPIGKTEKTGKRSTSAAVLELL------REAHPIVGRILEYRELMKLKSTYIDPLP-RL 550

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  K GR+H   N   T TGRLS+  PNLQN P       +IR+AFIA  G+ L+  DY 
Sbjct: 551  VHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFIAEEGHLLVALDYS 610

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAHL+  ++++  F+ G D H+ TA  M+                     PP  
Sbjct: 611  QIELRVLAHLSGDENLIRVFREGKDIHTETAAWMF-------------------GVPP-- 649

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
              +    + RR AK +NF + YG +   L+++  +  EEA   ++ ++    +V  W   
Sbjct: 650  --EGVDGAMRRAAKTVNFGVLYGMSAHRLSQELSIPYEEAAAFIERYFQSFPQVRAWIAH 707

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E R   +V TL GR R  P + +  +S R   ER A N PVQG+AAD+   AM+++ 
Sbjct: 708  TLEEGRKKGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF 767

Query: 1056 KNARLKELGWKLLLQV 1071
               RL+ LG ++LLQV
Sbjct: 768  --PRLRPLGVRILLQV 781


>gi|434382151|ref|YP_006703934.1| DNA polymerase I [Brachyspira pilosicoli WesB]
 gi|404430800|emb|CCG56846.1| DNA polymerase I [Brachyspira pilosicoli WesB]
          Length = 925

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/271 (36%), Positives = 141/271 (52%), Gaps = 25/271 (9%)

Query: 803  SLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAF 861
            S + N  L +  + V  K  R+H S N   T TGRLS+  PNLQN PA   +   IR  F
Sbjct: 630  SKLKNTYLDVFPTLVHKKTNRIHASFNQTVTATGRLSSSEPNLQNIPARGDEGKDIRNTF 689

Query: 862  IAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
            IA  GN LI ADY Q+ELR+LAH +N   +++AFK   D H +TAM +Y   +  V    
Sbjct: 690  IAEKGNVLIAADYSQIELRLLAHFSNDPVLVEAFKNNDDIHRKTAMKIYSVSKEHV---- 745

Query: 922  VLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDL 981
                       P         S R  AK++NFSI YGKT  GL+++  +S +EA   +  
Sbjct: 746  ----------TP---------SMRNTAKIINFSIIYGKTAFGLSKELNISRKEADDFIKG 786

Query: 982  WYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP-AIKSLTRSQRNHIERAAINTPVQ 1040
            +++   +V  + E   ++ +   +V T+LGR R     I S     RN  ER A+NT +Q
Sbjct: 787  YFSTYSQVKPFCEKVIEDVKAKGYVRTMLGRIRDLSKTINSSNAVVRNEAERMALNTLIQ 846

Query: 1041 GSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            GSAAD+   AM+ I K  +      K+++QV
Sbjct: 847  GSAADMIKVAMIAIHKEFKNHFKTAKIVMQV 877


>gi|418058623|ref|ZP_12696593.1| DNA polymerase I [Methylobacterium extorquens DSM 13060]
 gi|373567862|gb|EHP93821.1| DNA polymerase I [Methylobacterium extorquens DSM 13060]
          Length = 1047

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 147/291 (50%), Gaps = 25/291 (8%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
            E+ A+   D    +     +  L S +   LQ     G N RVH S  +  T TGRLS+ 
Sbjct: 729  EELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTN-RVHTSFALAATTTGRLSSS 787

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
             PNLQN P   ++  +IR+AF+A  G  LI ADY Q+ELR+LAH+A+   + +AF+ G D
Sbjct: 788  DPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGID 847

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  M+         G  L +  G+               RR+AK +NF I YG +
Sbjct: 848  IHAATASAMF---------GVALDQMTGD--------------LRRRAKTINFGIIYGIS 884

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLA    +  EEA   +  ++     +  + +  K+  R   +V TL GR   +P I+
Sbjct: 885  AFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIR 944

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            S   S+R  +ER AIN P+QG+AAD+   AM  +      K+L  ++LLQV
Sbjct: 945  SNNPSERASVERQAINAPIQGTAADIIRRAMTRMEDALEAKKLTARMLLQV 995


>gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1]
 gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1]
          Length = 1047

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 147/291 (50%), Gaps = 25/291 (8%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
            E+ A+   D    +     +  L S +   LQ     G N RVH S  +  T TGRLS+ 
Sbjct: 729  EELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTN-RVHTSFALAATTTGRLSSS 787

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
             PNLQN P   ++  +IR+AF+A  G  LI ADY Q+ELR+LAH+A+   + +AF+ G D
Sbjct: 788  DPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGID 847

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  M+         G  L +  G+               RR+AK +NF I YG +
Sbjct: 848  IHAATASAMF---------GVALDQMTGD--------------LRRRAKTINFGIIYGIS 884

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLA    +  EEA   +  ++     +  + +  K+  R   +V TL GR   +P I+
Sbjct: 885  AFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIR 944

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            S   S+R  +ER AIN P+QG+AAD+   AM  +      K+L  ++LLQV
Sbjct: 945  SNNPSERASVERQAINAPIQGTAADIIRRAMTRMEDALEAKKLTARMLLQV 995


>gi|386310384|ref|YP_006006440.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
 gi|418243097|ref|ZP_12869591.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
            PhRBD_Ye1]
 gi|433548771|ref|ZP_20504819.1| DNA polymerase I [Yersinia enterocolitica IP 10393]
 gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
 gi|351777459|gb|EHB19671.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
            PhRBD_Ye1]
 gi|431790285|emb|CCO67859.1| DNA polymerase I [Yersinia enterocolitica IP 10393]
          Length = 932

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/246 (39%), Positives = 134/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYR 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF AG D H  TA  ++         G  L +   
Sbjct: 704  IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVF---------GLSLEKVTN 754

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 755  E--------------QRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 801  VLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 861  RAMIAV 866


>gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
            str. ATCC 27774]
 gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
            str. ATCC 27774]
          Length = 921

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 150/281 (53%), Gaps = 26/281 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            + ++ E   ++ + S ++ PL    +   NGR+H + N   T TGRLS+  PNLQN P  
Sbjct: 614  VDSVLEFRKLEKMRSTYLDPL--PRLMDGNGRIHTTFNQKATATGRLSSSNPNLQNIPVR 671

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
                 ++R  FIA PG++L+ ADY Q+ELR+LAH++  K++L+AF+ G D H+RTA  +Y
Sbjct: 672  GDLGKRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLEAFRNGEDIHARTAALVY 731

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                + V   Q                       RR AK +NF + YG     L +D K+
Sbjct: 732  DLAPDQVSPDQ-----------------------RRNAKTINFGLIYGMGAQKLGQDLKI 768

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
            S  EAK+ +  +++    +  + ++ +  ++   +V TL GR R  P I S         
Sbjct: 769  STSEAKEFIARYFSRLTGLKEFYDSVEATAKRQGYVTTLGGRRRLLPDIHSPNGQAYALA 828

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             R AINT +QGSAAD+   AML ++++ +L+E   +LLLQV
Sbjct: 829  RRQAINTVIQGSAADIIKLAMLAVAEDEQLREHEARLLLQV 869


>gi|340351566|ref|ZP_08674478.1| DNA-directed DNA polymerase I [Prevotella pallens ATCC 700821]
 gi|339617850|gb|EGQ22463.1| DNA-directed DNA polymerase I [Prevotella pallens ATCC 700821]
          Length = 950

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/290 (34%), Positives = 147/290 (50%), Gaps = 25/290 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            +  + E   I  L+S +I  L    +  + G +H S N   T TGRLS+  PNLQN P  
Sbjct: 646  VHKILEYRGIKKLLSTYIDALPKL-IKPQTGHIHTSFNQALTATGRLSSSDPNLQNIPVR 704

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
              D  +IR+ FI  PG     ADY Q+ELRI+AHL+  ++M++AF+ G D H  TA  + 
Sbjct: 705  TDDGKEIRKCFIPEPGCKFFSADYSQIELRIMAHLSEDENMMEAFREGVDIHRATAAKI- 763

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                           WH ED      L D    +R+KAK  NF I YG T  GLA+   +
Sbjct: 764  ---------------WH-ED------LNDVSDIQRKKAKQANFGIIYGITTFGLAQRMDI 801

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
            +  EAK+ +  ++    +V  + +   +E+R   +  T+  R R    I S   + R + 
Sbjct: 802  TNNEAKELIADYFKTFPKVKAYMDLSIEEARQKGYAETIFHRRRYLADINSKNATVRGYA 861

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSFF 1080
            ER AIN P+QGS AD+   AM+ I +  + + +  K++LQV    +FS F
Sbjct: 862  ERNAINAPIQGSEADIIKVAMVRIWQRFKRENIRSKMILQVHDELNFSVF 911



 Score = 45.1 bits (105), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 20/173 (11%)

Query: 338 LASFYSNVMVVDNVSAAKKVV-WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFS 396
           ++  + N  +++N + AK +  ++ T +Y  L    DTE    D      +D  E++  S
Sbjct: 351 ISEVHHNYKLIENEAEAKNICDYLFTKEYLSL----DTETTSTDA-----ID-AELVGLS 400

Query: 397 IYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGL 456
                +  F      + +       + ++N F P +ED SI K+  N  +D  VL  YG+
Sbjct: 401 FSVAEQEAF-----YVPISANREEAQKIVNIFKPLYEDESILKIGQNIKYDYEVLHKYGV 455

Query: 457 KVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSED----KKAYQKDM 505
            + G   DTM    L     R    Y  E L   + +  E     K  +QK+M
Sbjct: 456 TLKGKLFDTMIAHYLIQPELRHNMDYMAETLLNYKTIPIESLIGPKGKHQKNM 508


>gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 1047

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 147/291 (50%), Gaps = 25/291 (8%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
            E+ A+   D    +     +  L S +   LQ     G N RVH S  +  T TGRLS+ 
Sbjct: 729  EELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTN-RVHTSFALAATTTGRLSSS 787

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
             PNLQN P   ++  +IR+AF+A  G  LI ADY Q+ELR+LAH+A+   + +AF+ G D
Sbjct: 788  DPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGID 847

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  M+         G  L +  G+               RR+AK +NF I YG +
Sbjct: 848  IHAATASAMF---------GVALDQMTGD--------------LRRRAKTINFGIIYGIS 884

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLA    +  EEA   +  ++     +  + +  K+  R   +V TL GR   +P I+
Sbjct: 885  AFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIR 944

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            S   S+R  +ER AIN P+QG+AAD+   AM  +      K+L  ++LLQV
Sbjct: 945  SNNPSERASVERQAINAPIQGTAADIIRRAMTRMEDALEAKKLTARMLLQV 995


>gi|227890554|ref|ZP_04008359.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
 gi|227867492|gb|EEJ74913.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
          Length = 892

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 144/257 (56%), Gaps = 24/257 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            VS K+G+ H       T TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  +DY
Sbjct: 610  VSKKDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDY 669

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  K+M +AFK G D H+ TAM ++                   D P  
Sbjct: 670  SQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIF-----------------NVDSPD- 711

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                +   + RR+AK +NF I YG +  GL+++  +S ++AK+ +D + +    V  + E
Sbjct: 712  ----EVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYME 767

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + ++ + +V T+  R R  P IKS   + R+  ER A+N+P+QGSAAD+   AM+ +
Sbjct: 768  KIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINM 827

Query: 1055 SKNARLKELGWKLLLQV 1071
             +  + K L  K+LLQV
Sbjct: 828  QEMLKEKNLQAKMLLQV 844


>gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63]
 gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
 gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
          Length = 882

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 159/304 (52%), Gaps = 28/304 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N  +    ++     D I+   ++  ++S     +L +    ++ ++ R+H S 
Sbjct: 558  KTGYSTNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNI----INPESNRIHSSF 613

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PNLQN P   +   KIR+ FIA     L+ ADY Q+ELR+LAH++ 
Sbjct: 614  NQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQ 673

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M++AFK   D H++TA  ++                       VP+ +D  +  R  
Sbjct: 674  DENMIEAFKHHEDIHTKTASQVFN----------------------VPM-EDVTSELRGA 710

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGK+  GLA D  + V +AK+ ++ ++ +  ++  + +   +++  D +  
Sbjct: 711  AKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAV 770

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+L R R  P IKS    +RN  +R A+N P+QGSAAD+   AM+ + K      L  KL
Sbjct: 771  TILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKL 830

Query: 1068 LLQV 1071
            +LQV
Sbjct: 831  ILQV 834


>gi|381165954|ref|ZP_09875173.1| DNA polymerase I (POL I) [Phaeospirillum molischianum DSM 120]
 gi|380684938|emb|CCG39985.1| DNA polymerase I (POL I) [Phaeospirillum molischianum DSM 120]
          Length = 936

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 129/239 (53%), Gaps = 24/239 (10%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + ++   GRVH S ++  T TGRLS+  PNLQN P   ++  KIR+AFIA PG  LI AD
Sbjct: 654  AQINPATGRVHTSFSLAATTTGRLSSSDPNLQNIPIRTEEGRKIRRAFIAKPGFCLISAD 713

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR++AH+A  + +  AF  G D H+ TA  ++                       
Sbjct: 714  YSQIELRLVAHVAGIEGLRTAFAEGRDIHAITASQVFG---------------------- 751

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
            VPL ++  +S RR+AK +NF I YG +P GLA    +   EAK  +D ++    E+  + 
Sbjct: 752  VPL-EEVDSSLRRRAKAINFGIIYGISPFGLAAQLSIPQGEAKAYIDAYFGRYPEIRAFM 810

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
            E  K+E+R    V T  GR    P IK    + R   ERAAIN P+QG AAD+   AM+
Sbjct: 811  EQTKEEARAFGFVRTPFGRKVFTPGIKDKNAAVRAFAERAAINGPIQGGAADIIKRAMI 869


>gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
            105.5R(r)]
 gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
            105.5R(r)]
          Length = 932

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/246 (39%), Positives = 134/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYR 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF AG D H  TA  ++         G  L +   
Sbjct: 704  IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVF---------GLSLEKVTN 754

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 755  E--------------QRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 801  VLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 861  RAMIAV 866


>gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 688

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 26/257 (10%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ +  RVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA PGN LI ADY 
Sbjct: 404  INPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYS 463

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 464  QIELRVLAHVADIAQLKQAFADGIDIHAMTASEMF----------------------GVP 501

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  +   SE RR+AK +NF I YG +  GLA    +  EEA + +  ++     +  + E
Sbjct: 502  V--EGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYME 559

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            A K  +R   +V T+ GR   +P I++     R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 560  ATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRM 619

Query: 1055 SKNARLKELGWKLLLQV 1071
                  + L  ++LLQV
Sbjct: 620  EDALAKENLAARMLLQV 636



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 92/327 (28%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV---------DLLDG 419
           + A DTE   +D  Q       E++ FS+   P      GK+  +V         DLL G
Sbjct: 100 ILAFDTETTSLDPMQ------AELVGFSLALAP------GKAA-YVPLQHKSGAGDLLGG 146

Query: 420 GGRD-------LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLW 472
           G  +        L       ED SI K+  N  +D  V+  +G+    F  DTM ++ + 
Sbjct: 147 GMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFD-DTMLISYVL 205

Query: 473 DSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFGRRKLK 530
           D+     G + ++ L+                       E ++G   I+ KD+ G     
Sbjct: 206 DAG---TGSHGMDPLS-----------------------ERWLGHTPIAYKDVAG----- 234

Query: 531 KDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVP 590
               +GK +    + ++ R       +Y+A D+  TL+L++ LK +L             
Sbjct: 235 ----SGKSAVTFDMVDIDRA-----TAYAAEDADVTLRLWQVLKPRL------------A 273

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
            + +   Y+   +P  ++L +ME  G+ VDR+ LS +       Q AA      +A    
Sbjct: 274 AEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS--GDLAQAAAAYEDEIYALA-- 329

Query: 651 PDAKYMNVGSDTQLRQLLFG--GKPNS 675
              +   +GS  QL  +LFG  G P +
Sbjct: 330 --GEKFTIGSPKQLGDILFGKMGLPGA 354


>gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
 gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
          Length = 899

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/253 (35%), Positives = 140/253 (55%), Gaps = 25/253 (9%)

Query: 821  NGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GR+H + N     TGRLS+  PNLQN P   ++  +IR+AF+   G   L+ ADY Q+E
Sbjct: 621  DGRIHTTFNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGEGYECLLTADYSQIE 680

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AHL++  ++++AF +G DFH+ TA +++      VE G                  
Sbjct: 681  MRIMAHLSSDDALIEAFNSGHDFHAATASSVF-----TVEVG------------------ 717

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D  A +RRK K +N+ +AYG +  GL++   +S EEA+  ++ ++     V  + +    
Sbjct: 718  DVTADQRRKIKAMNYGLAYGLSAFGLSQQLGISAEEARGLMENYFAGFGGVRDYLQEVVA 777

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R D +  T+LGR R  P + S  R +R   ER A+N P+QGSAAD+   AML +    
Sbjct: 778  RARQDGYTSTILGRRRYLPDLVSDNRQRREMAERMALNAPIQGSAADIIKVAMLHVDSAL 837

Query: 1059 RLKELGWKLLLQV 1071
            R   L  ++LLQV
Sbjct: 838  RDAGLRSRMLLQV 850


>gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
 gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
          Length = 932

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/246 (38%), Positives = 134/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + +SG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLMINPISG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYR 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  + +L AF AG D H  TA  ++                  
Sbjct: 704  IMAADYSQIELRIMAHLSQDQGLLTAFAAGKDIHRATAAEVF------------------ 745

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 +PL K     +RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 746  ----GLPLEK-VTNDQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 801  VLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 861  RAMIAV 866


>gi|2506365|sp|P80194.2|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC
            polymerase 1
 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus]
          Length = 834

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 154/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL  S V    GR+H   N   T TGRLS
Sbjct: 519  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPNTGRLHTRFNQTATATGRLS 577

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 578  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 638  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 675  MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 735  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLREMGARMLLQV 785


>gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 5b str.
            L20]
 gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 5b
            str. L20]
          Length = 957

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 156/306 (50%), Gaps = 32/306 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   ++ A +       L E   +  L S +   LPL    ++ K GRVH 
Sbjct: 633  KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INQKTGRVHT 687

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 688  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHL 747

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN + M+ AF  G D H  TA  ++    + V + Q                       R
Sbjct: 748  ANDEGMITAFAEGKDIHCATAAEIFGLALDQVTSEQ-----------------------R 784

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S  +AKK ++ ++     V  +    ++ +    +
Sbjct: 785  RSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGY 844

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TL GR    P IKS    +R   ER AIN P+QG+AAD+   AM++I K  R  +   
Sbjct: 845  VETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIDIDKAIRGDD-NI 903

Query: 1066 KLLLQV 1071
            K+++QV
Sbjct: 904  KMIMQV 909


>gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
          Length = 931

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/257 (36%), Positives = 139/257 (54%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA  G  ++  DY 
Sbjct: 650  INPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYS 709

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K++LDAF+ G D H+ TA  +       V+  QV             
Sbjct: 710  QIELRIMAHLSGDKALLDAFQQGKDIHAATAAEII-----GVDIEQV------------- 751

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                  A +RR+AK +NF + YG +  GLA+   +   EA++ +D ++     V+ + E 
Sbjct: 752  -----SAEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQQYMDTYFERYPGVMQYMED 806

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  +    +V T+ GR    P IKS    +R   ERAAIN P+QG+AAD+   AML + 
Sbjct: 807  TRSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVD 866

Query: 1056 KNARLKELG-WKLLLQV 1071
            +    +  G  KLL+QV
Sbjct: 867  EWIESQGQGRVKLLMQV 883


>gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|387869406|ref|YP_005800775.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163]
 gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163]
          Length = 929

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/248 (37%), Positives = 135/248 (54%), Gaps = 27/248 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    ++  +GRVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA  G+ 
Sbjct: 644  LPLM---INPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHR 700

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF +  D H  TA  ++         G  L +  G
Sbjct: 701  IVAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVF---------GVSLDKVSG 751

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 752  E--------------QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 797

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E+ ++ +    +V TL GR    P IK+    +R   ERAAIN P+QG+AAD+  
Sbjct: 798  VLQYMESTRELAAQKGYVSTLDGRRLYLPDIKASNAMRRKAAERAAINAPMQGTAADIIK 857

Query: 1049 CAMLEISK 1056
             AM+ + +
Sbjct: 858  RAMIAVDR 865



 Score = 43.1 bits (100), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           D+L    P  EDP  +KV  N  FD  VL+ Y +++ G   DTM
Sbjct: 400 DVLARLKPLLEDPQAQKVGQNLKFDRGVLKRYDIELQGIRFDTM 443


>gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
 gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
          Length = 924

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 136/258 (52%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + ++   GRVH S  +  T TGRLS+  PNLQN P   ++  +IR+AF+A PG+ L+ AD
Sbjct: 642  NQINPATGRVHTSFQMAVTTTGRLSSNDPNLQNIPIRTEEGGRIRRAFVAAPGHLLVSAD 701

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LA +AN  ++ +AF  G D H+RTA  ++             +   G D   
Sbjct: 702  YSQIELRLLADVANIPALREAFALGQDIHARTASEVFG------------IPLEGMD--- 746

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             PL        RR+AK +NF I YG +  GL R   +   EA+  +D ++     +  + 
Sbjct: 747  -PL-------TRRRAKAINFGIIYGISAFGLGRQLGIPPGEARGYIDAYFARYPGIRDYM 798

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K E+R   +V T  GR    P I   +  +RN+ ER AIN P+QG AAD+   AM+ 
Sbjct: 799  ERVKAEARAKGYVTTPFGRRCWVPGIADKSAVRRNYAERQAINAPLQGGAADIIKRAMVR 858

Query: 1054 ISKNARLKELGWKLLLQV 1071
            I        L  ++LLQV
Sbjct: 859  IPAALSDAGLDGRMLLQV 876


>gi|418961104|ref|ZP_13512991.1| DNA polymerase I [Lactobacillus salivarius SMXD51]
 gi|380344771|gb|EIA33117.1| DNA polymerase I [Lactobacillus salivarius SMXD51]
          Length = 892

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 144/257 (56%), Gaps = 24/257 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            VS K+G+ H       T TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  +DY
Sbjct: 610  VSKKDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDY 669

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  K+M +AFK G D H+ TAM ++                   D P  
Sbjct: 670  SQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIF-----------------NVDSPD- 711

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                +   + RR+AK +NF I YG +  GL+++  +S ++AK+ +D + +    V  + E
Sbjct: 712  ----EVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYME 767

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + ++ + +V T+  R R  P IKS   + R+  ER A+N+P+QGSAAD+   AM+ +
Sbjct: 768  KIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINM 827

Query: 1055 SKNARLKELGWKLLLQV 1071
             +  + K L  K+LLQV
Sbjct: 828  QEMLKEKNLQAKMLLQV 844


>gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
 gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
          Length = 931

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/271 (36%), Positives = 141/271 (52%), Gaps = 25/271 (9%)

Query: 803  SLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAF 861
            S + N  L +  + V  K  R+H S N   T TGRLS+  PNLQN PA   +   IR  F
Sbjct: 636  SKLKNTYLDVFPTLVHKKTNRIHASFNQTVTATGRLSSSEPNLQNIPARGDEGKDIRNTF 695

Query: 862  IAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
            IA  GN LI ADY Q+ELR+LAH +N   +++AFK   D H +TAM +Y   +  V    
Sbjct: 696  IAEKGNVLIAADYSQIELRLLAHFSNDPVLVEAFKNNDDIHRKTAMKIYSVSKEHV---- 751

Query: 922  VLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDL 981
                       P         S R  AK++NFSI YGKT  GL+++  +S +EA   +  
Sbjct: 752  ----------TP---------SMRNTAKIINFSIIYGKTAFGLSKELNISRKEADDFIKG 792

Query: 982  WYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP-AIKSLTRSQRNHIERAAINTPVQ 1040
            +++   +V  + E   ++ +   +V T+LGR R     I S     RN  ER A+NT +Q
Sbjct: 793  YFSTYSQVKPFCEKVIEDVKAKGYVRTMLGRIRDLSKTINSSNAVVRNEAERMALNTLIQ 852

Query: 1041 GSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            GSAAD+   AM+ I K  +      K+++QV
Sbjct: 853  GSAADMIKVAMIAIHKEFKNHFKTAKIVMQV 883


>gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54]
 gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54]
          Length = 889

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/253 (35%), Positives = 136/253 (53%), Gaps = 24/253 (9%)

Query: 820  KNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            + GR++ S N   T TGRLS+  PN+QN P   ++  +IR+AF+   G   + ADY Q++
Sbjct: 614  ETGRIYTSFNQTITATGRLSSSNPNMQNIPIRMEEGNRIRRAFVPEAGKVFLAADYSQID 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH +   ++  AF AG D H+RTA  ++     +V T  V  E             
Sbjct: 674  LRVLAHYSGDDALTRAFAAGQDIHARTAAELF-----SVSTMLVNPEM------------ 716

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR AK +NF I YG +  GLA+   +  +EA++ +D +++    V  +     +
Sbjct: 717  ------RRVAKSINFGIVYGMSAFGLAQQLGIGRKEAQRFIDRYFHLYAGVKQFMIDIVE 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P I +  +  R   ER AINTP+QG+AAD+  CAM+ + K  
Sbjct: 771  QTRERGYATTLLGRRRAVPDIDAKNKGMREFAERMAINTPIQGTAADIIKCAMIAVEKKL 830

Query: 1059 RLKELGWKLLLQV 1071
                LG K+LLQ+
Sbjct: 831  AAAGLGAKMLLQI 843


>gi|423082473|ref|ZP_17071065.1| DNA-directed DNA polymerase [Clostridium difficile 002-P50-2011]
 gi|423087885|ref|ZP_17076271.1| DNA-directed DNA polymerase [Clostridium difficile 050-P50-2011]
 gi|357544199|gb|EHJ26205.1| DNA-directed DNA polymerase [Clostridium difficile 050-P50-2011]
 gi|357548799|gb|EHJ30659.1| DNA-directed DNA polymerase [Clostridium difficile 002-P50-2011]
          Length = 882

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 159/304 (52%), Gaps = 28/304 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N  +    ++     D I+   ++  ++S     +L +    ++ ++ R+H S 
Sbjct: 558  KTGYSTNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNI----INPESNRIHSSF 613

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PNLQN P   +   KIR+ FIA     L+ ADY Q+ELR+LAH++ 
Sbjct: 614  NQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQ 673

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M++AFK   D H++TA  ++                       VP+ +D  +  R  
Sbjct: 674  DENMIEAFKHHEDIHTKTASQVFN----------------------VPM-EDVTSELRGA 710

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGK+  GLA D  + V +AK+ ++ ++ +  ++  + +   +++  D +  
Sbjct: 711  AKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAV 770

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+L R R  P IKS    +RN  +R A+N P+QGSAAD+   AM+ + K      L  KL
Sbjct: 771  TILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKL 830

Query: 1068 LLQV 1071
            +LQV
Sbjct: 831  ILQV 834


>gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1016

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 135/254 (53%), Gaps = 30/254 (11%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 736  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 795

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 796  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 834

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 835  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 892

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 893  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LV 950

Query: 1062 ELGW----KLLLQV 1071
            E+G     ++LLQV
Sbjct: 951  EVGLADRVRMLLQV 964



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 101/255 (39%), Gaps = 71/255 (27%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D L       ED SI KV  N  +D  +++ YG++   F  DTM ++ + D+     G +
Sbjct: 483 DALARLKALLEDESILKVAQNLKYDYLLMKRYGIETRSFD-DTMLISYVLDAG---TGAH 538

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIST 540
            ++ L+                       E F+G   I  KD+ G         +GK + 
Sbjct: 539 GMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKANV 566

Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
              + ++ R        Y+A D+  TL+L+  LK +L                +   Y+ 
Sbjct: 567 TFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYER 609

Query: 601 YWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAKY 655
             +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++          
Sbjct: 610 LERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERF---------- 659

Query: 656 MNVGSDTQLRQLLFG 670
            N+GS  QL  +LFG
Sbjct: 660 -NIGSPKQLGDILFG 673


>gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
 gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
          Length = 939

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 152/292 (52%), Gaps = 29/292 (9%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSA 839
            Q A +  +  + + E  S+  L S +   LP Q   ++ + GRVH S       TGRLS+
Sbjct: 626  QLAEDGHEMPNLILEYRSLAKLKSTYTDSLPKQ---INQQTGRVHTSYQQAVASTGRLSS 682

Query: 840  RRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
              PNLQN P    +  +IRQAFIA PG  L+ +DY Q+ELRI+AHL+   S+L AF  G 
Sbjct: 683  TEPNLQNIPIRSAEGRRIRQAFIAQPGYRLMASDYSQIELRIMAHLSGDASLLKAFAEGK 742

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H  TA  ++                   + P    L++  + +RR AK +NF + YG 
Sbjct: 743  DIHQATAAEIF-------------------NMP----LEEVTSEQRRSAKAVNFGLIYGM 779

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            +  GLA+   +S   A++ ++L++     V  + E+ K+ ++   +V TL+GR    P I
Sbjct: 780  SAFGLAKQLNISRGLAQEYINLYFARYPGVANYMESTKENAKQTGYVETLMGRRLYLPDI 839

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             +     R + ER AIN P+QG+AAD+   AM+++ +         K+L+QV
Sbjct: 840  NAKNGQLRQYAERTAINAPMQGTAADIIKTAMVKMQQWLDQTPCDIKMLMQV 891



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 65/253 (25%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           +++L +  P  E+P+IKKV  N+ +D H+ +N G++V G   DTM  +  ++S       
Sbjct: 409 QEVLAKLKPLLENPAIKKVGQNFKYDWHIFKNAGIEVQGMAYDTMLESYCFNS------- 461

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
                    R  M +    Y    +           I  KDI G  K +K  +  ++ T 
Sbjct: 462 ------VATRHNMDDLALTYLNHST-----------IHFKDIAGTGKKQKTFNQIELETA 504

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
           +P              Y+A D+  TL+L+++L  KL         +P    +++  ++E 
Sbjct: 505 SP--------------YAAEDADITLQLHQTLLPKL-------QAEP----TLYKVFEEI 539

Query: 602 WQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAKYM 656
             P   +L KME  G+L+DR+ L++      +K+   EQ+A           H       
Sbjct: 540 EMPLMPVLAKMERNGVLIDRQMLADQSYELGQKLTELEQKA-----------HLIAGTPF 588

Query: 657 NVGSDTQLRQLLF 669
           N+ S  QL+++LF
Sbjct: 589 NLNSSKQLQEVLF 601


>gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953]
 gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
 gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953]
 gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
          Length = 932

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 131/246 (53%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYC 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF AG D H  TA  ++      V T Q       
Sbjct: 704  IMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQ------- 756

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 757  ----------------RRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 801  VLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 861  RAMIAV 866


>gi|414156626|ref|ZP_11412927.1| DNA polymerase I [Streptococcus sp. F0442]
 gi|410869619|gb|EKS17579.1| DNA polymerase I [Streptococcus sp. F0442]
          Length = 894

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 157/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCSLNIN-TETGRLS 838
            A D +  L  +  I S I  +  I  +Q + V G      ++G++H     + T+TGRLS
Sbjct: 575  AVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQDLTQTGRLS 634

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAFK
Sbjct: 635  SVDPNLQNIPVRLEQGRL-IRKAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFK 693

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   +KP     +D   ++RR AK +NF + 
Sbjct: 694  HGADIHTSTAMRVF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVV 731

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  
Sbjct: 732  YGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREI 791

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         K+LLQV
Sbjct: 792  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALERGAYKTKMLLQV 846


>gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255]
          Length = 882

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 159/304 (52%), Gaps = 28/304 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N  +    ++     D I+   ++  ++S     +L +    ++ ++ R+H S 
Sbjct: 558  KTGYSTNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNI----INPESNRIHSSF 613

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PNLQN P   +   KIR+ FIA     L+ ADY Q+ELR+LAH++ 
Sbjct: 614  NQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQ 673

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M++AFK   D H++TA  ++                       VP+ +D  +  R  
Sbjct: 674  DENMIEAFKHHEDIHTKTASQVFN----------------------VPM-EDVTSELRGA 710

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGK+  GLA D  + V +AK+ ++ ++ +  ++  + +   +++  D +  
Sbjct: 711  AKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAV 770

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+L R R  P IKS    +RN  +R A+N P+QGSAAD+   AM+ + K      L  KL
Sbjct: 771  TILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKL 830

Query: 1068 LLQV 1071
            +LQV
Sbjct: 831  ILQV 834


>gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630]
 gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42]
 gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile 630]
          Length = 882

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 159/304 (52%), Gaps = 28/304 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N  +    ++     D I+   ++  ++S     +L +    ++ ++ R+H S 
Sbjct: 558  KTGYSTNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNI----INPESNRIHSSF 613

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PNLQN P   +   KIR+ FIA     L+ ADY Q+ELR+LAH++ 
Sbjct: 614  NQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQ 673

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M++AFK   D H++TA  ++                       VP+ +D  +  R  
Sbjct: 674  DENMIEAFKHHEDIHTKTASQVFN----------------------VPM-EDVTSELRGA 710

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGK+  GLA D  + V +AK+ ++ ++ +  ++  + +   +++  D +  
Sbjct: 711  AKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAV 770

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+L R R  P IKS    +RN  +R A+N P+QGSAAD+   AM+ + K      L  KL
Sbjct: 771  TILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKL 830

Query: 1068 LLQV 1071
            +LQV
Sbjct: 831  ILQV 834


>gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26]
 gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932]
 gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55]
 gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79]
 gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291]
 gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58]
 gi|384360315|ref|YP_006198167.1| DNA polymerase I [Clostridium difficile BI1]
 gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291]
          Length = 882

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 159/304 (52%), Gaps = 28/304 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N  +    ++     D I+   ++  ++S     +L +    ++ ++ R+H S 
Sbjct: 558  KTGYSTNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNI----INPESNRIHSSF 613

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PNLQN P   +   KIR+ FIA     L+ ADY Q+ELR+LAH++ 
Sbjct: 614  NQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQ 673

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M++AFK   D H++TA  ++                       VP+ +D  +  R  
Sbjct: 674  DENMIEAFKHHEDIHTKTASQVFN----------------------VPM-EDVTSELRGA 710

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGK+  GLA D  + V +AK+ ++ ++ +  ++  + +   +++  D +  
Sbjct: 711  AKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAV 770

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+L R R  P IKS    +RN  +R A+N P+QGSAAD+   AM+ + K      L  KL
Sbjct: 771  TILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKL 830

Query: 1068 LLQV 1071
            +LQV
Sbjct: 831  ILQV 834


>gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1052

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 146/291 (50%), Gaps = 25/291 (8%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
            E+ A+   D    +     +  L S +   LQ     G N RVH S  +  T TGRLS+ 
Sbjct: 734  EELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTN-RVHTSFALAATTTGRLSSS 792

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
             PNLQN P   ++  +IR+AF+A  G  LI ADY Q+ELR+LAH+A+   + +AF+ G D
Sbjct: 793  DPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGID 852

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  M+         G  L +  G+               RR+AK +NF I YG +
Sbjct: 853  IHAATASAMF---------GVALDQMTGD--------------LRRRAKTINFGIIYGIS 889

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLA    +  EEA   +  ++     +  + +  K+  R   +V TL GR   +P I+
Sbjct: 890  AFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIR 949

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            S   S+R  +ER AIN P+QG+AAD+   AM  +      K L  ++LLQV
Sbjct: 950  SNNPSERASVERQAINAPIQGTAADIIRRAMTRMEDALEAKRLTARMLLQV 1000


>gi|90961464|ref|YP_535380.1| DNA polymerase I [Lactobacillus salivarius UCC118]
 gi|90820658|gb|ABD99297.1| DNA polymerase I [Lactobacillus salivarius UCC118]
          Length = 892

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 144/257 (56%), Gaps = 24/257 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            VS K+G+ H       T TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  +DY
Sbjct: 610  VSKKDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDY 669

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  K+M +AFK G D H+ TAM ++                   D P  
Sbjct: 670  SQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIF-----------------NVDSPD- 711

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                +   + RR+AK +NF I YG +  GL+++  +S ++AK+ +D + +    V  + E
Sbjct: 712  ----EVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYME 767

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + ++ + +V T+  R R  P IKS   + R+  ER A+N+P+QGSAAD+   AM+ +
Sbjct: 768  KIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINM 827

Query: 1055 SKNARLKELGWKLLLQV 1071
             +  + K L  K+LLQV
Sbjct: 828  QEMLKEKNLQAKMLLQV 844


>gi|424873127|ref|ZP_18296789.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae WSM1455]
 gi|393168828|gb|EJC68875.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae WSM1455]
          Length = 999

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 135/254 (53%), Gaps = 30/254 (11%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 719  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 778

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 779  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 817

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 818  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 875

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 876  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LV 933

Query: 1062 ELGW----KLLLQV 1071
            E+G     ++LLQV
Sbjct: 934  EVGLADRVRMLLQV 947



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 71/255 (27%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D L       ED S+ KV  N  +D  +++ YG++   F  DTM ++ + D+     G +
Sbjct: 466 DALPRLKALLEDESVLKVAQNLKYDYLLMKRYGIETRSFD-DTMLISYVLDAG---TGAH 521

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIST 540
            ++ L+                       E F+G   I  KD+ G         +GK + 
Sbjct: 522 GMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKANV 549

Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
              + ++ R        Y+A D+  TL+L+  LK +L                +   Y+ 
Sbjct: 550 TFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYER 592

Query: 601 YWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAKY 655
             +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++          
Sbjct: 593 LERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERF---------- 642

Query: 656 MNVGSDTQLRQLLFG 670
            N+GS  QL  +LFG
Sbjct: 643 -NIGSPKQLGDILFG 656


>gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4]
 gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1047

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 146/291 (50%), Gaps = 25/291 (8%)

Query: 782  EQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSAR 840
            E+ A+   D    +     +  L S +   LQ     G N RVH S  +  T TGRLS+ 
Sbjct: 729  EELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTN-RVHTSFALAATTTGRLSSS 787

Query: 841  RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD 900
             PNLQN P   ++  +IR+AF+A  G  LI ADY Q+ELR+LAH+A+   + +AF+ G D
Sbjct: 788  DPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGID 847

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  M+         G  L +  G+               RR+AK +NF I YG +
Sbjct: 848  IHAATASAMF---------GVALDQMTGD--------------LRRRAKTINFGIIYGIS 884

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
              GLA    +  EEA   +  ++     +  + +  K+  R   +V TL GR   +P I+
Sbjct: 885  AFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIR 944

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            S   S+R  +ER AIN P+QG+AAD+   AM  +      K L  ++LLQV
Sbjct: 945  SNNPSERASVERQAINAPIQGTAADIIRRAMTRMEDALEAKRLTARMLLQV 995


>gi|453065753|gb|EMF06713.1| DNA polymerase I [Serratia marcescens VGH107]
          Length = 932

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/246 (38%), Positives = 134/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLMINPVSG---RVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYR 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  + +L AF  G D H  TA  ++                  
Sbjct: 704  IVAADYSQIELRIMAHLSQDEGLLKAFAEGKDIHRATASEVFG----------------- 746

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 VPL K     +RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 747  -----VPLDK-VTGEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++    +V TL GR    P ++S    +R   ERAAIN P+QG+AAD+  
Sbjct: 801  VLDYMERTRQQASEQGYVSTLDGRRLYLPDVRSSNAMRRKAAERAAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+E+
Sbjct: 861  RAMIEV 866


>gi|385840195|ref|YP_005863519.1| DNA polymerase I [Lactobacillus salivarius CECT 5713]
 gi|300214316|gb|ADJ78732.1| DNA polymerase I [Lactobacillus salivarius CECT 5713]
          Length = 892

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 144/257 (56%), Gaps = 24/257 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            VS K+G+ H       T TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  +DY
Sbjct: 610  VSKKDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDY 669

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  K+M +AFK G D H+ TAM ++                   D P  
Sbjct: 670  SQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIF-----------------NVDSPD- 711

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                +   + RR+AK +NF I YG +  GL+++  +S ++AK+ +D + +    V  + E
Sbjct: 712  ----EVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYME 767

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + ++ + +V T+  R R  P IKS   + R+  ER A+N+P+QGSAAD+   AM+ +
Sbjct: 768  KIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINM 827

Query: 1055 SKNARLKELGWKLLLQV 1071
             +  + K L  K+LLQV
Sbjct: 828  QEMLKEKNLQAKMLLQV 844


>gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
 gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
          Length = 949

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 154/305 (50%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+       +  + E   +  L+  +I  L    ++ + GRVH S N   T 
Sbjct: 628  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 686

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 687  TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +  D H+ TA  +Y      ++                  LKD  +  RRKAK  NF
Sbjct: 747  AFLSNHDIHAATAAKVY-----KID------------------LKDVGSDMRRKAKTANF 783

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++     V  + +   + ++   +V T+  R 
Sbjct: 784  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPGVKVYMDKSIQVAQEKGYVETIFHRK 843

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + +  K++LQV  
Sbjct: 844  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHD 903

Query: 1074 FFSFS 1078
              +FS
Sbjct: 904  ELNFS 908



 Score = 41.2 bits (95), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 26/43 (60%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++NEF P FE+ +  KV  N  +D  VL+NYG  V G   DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLFDTM 464


>gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168]
 gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168]
          Length = 870

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 160/307 (52%), Gaps = 33/307 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++  K+    ++       IS   ++  + S   + + P+    ++   GR+H S 
Sbjct: 540  KTGYSTGAKVLEKLEDKHPIIPLISEYRQLMKLKSTYVDALPPM----INPDTGRLHTSF 595

Query: 829  N-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLA 886
            N + T TGRLS+  PNLQN P    +  +IR+AFI    +  L+ ADY Q+ELR+LAH++
Sbjct: 596  NQMVTATGRLSSTEPNLQNIPVRTDEGREIRRAFITENEDWVLLAADYSQIELRVLAHIS 655

Query: 887  NCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERR 946
            + + +  AF  G D H++TA  ++      VE  +V                    + RR
Sbjct: 656  DDEGLKAAFNTGQDIHTQTASEVF-----EVEPDEVT------------------PNMRR 692

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
             AK++NF IAYG +P GLARD  +S +EA   ++ ++     V  + E    E++   +V
Sbjct: 693  HAKVINFGIAYGMSPYGLARDLGISRQEASDYINKYFERFTGVKDYMERVVTEAKTKGYV 752

Query: 1007 HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELG-- 1064
             T+  R R  P I S    +R+  ER AINTP+QG+AAD+   AM+++    RLKE G  
Sbjct: 753  TTIFNRRRYIPEINSRNYHRRSFAERTAINTPIQGTAADIMKLAMIKVYN--RLKENGSP 810

Query: 1065 WKLLLQV 1071
             ++LLQV
Sbjct: 811  ARILLQV 817


>gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 932

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 131/246 (53%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYC 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF AG D H  TA  ++      V T Q       
Sbjct: 704  IMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQ------- 756

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 757  ----------------RRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 801  VLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 861  RAMIAV 866


>gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
 gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
          Length = 932

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 131/246 (53%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYC 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF AG D H  TA  ++      V T Q       
Sbjct: 704  IMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQ------- 756

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 757  ----------------RRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 801  VLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 861  RAMIAV 866


>gi|423090703|ref|ZP_17078989.1| DNA-directed DNA polymerase [Clostridium difficile 70-100-2010]
 gi|357555818|gb|EHJ37440.1| DNA-directed DNA polymerase [Clostridium difficile 70-100-2010]
          Length = 882

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 159/304 (52%), Gaps = 28/304 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N  +    ++     D I+   ++  ++S     +L +    ++ ++ R+H S 
Sbjct: 558  KTGYSTNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNI----INPESNRIHSSF 613

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGR+S+  PNLQN P   +   KIR+ FIA     L+ ADY Q+ELR+LAH++ 
Sbjct: 614  NQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQ 673

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M++AFK   D H++TA  ++                       VP+ +D  +  R  
Sbjct: 674  DENMIEAFKHHEDIHTKTASQVFN----------------------VPM-EDVTSELRGA 710

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YGK+  GLA D  + V +AK+ ++ ++ +  ++  + +   +++  D +  
Sbjct: 711  AKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAV 770

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+L R R  P IKS    +RN  +R A+N P+QGSAAD+   AM+ + K      L  KL
Sbjct: 771  TILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKL 830

Query: 1068 LLQV 1071
            +LQV
Sbjct: 831  ILQV 834


>gi|387784882|ref|YP_006070965.1| DNA polymerase I [Streptococcus salivarius JIM8777]
 gi|338745764|emb|CCB96130.1| DNA polymerase I [Streptococcus salivarius JIM8777]
          Length = 879

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 160/285 (56%), Gaps = 32/285 (11%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S ++L LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 574  VAKILEYRQITKLQSTYVLGLQDYIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 631

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    ++++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 632  LEQGRL-IRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 690

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GL+ + 
Sbjct: 691  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDFGLSNNL 728

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S ++AK+ +D ++     +  + +   +E++    V TL  R R  P I S   + RN
Sbjct: 729  GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGFVETLFHRRRELPDINSRNFNVRN 788

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K   L E G+  K+LLQV
Sbjct: 789  FAERTAINSPIQGSAADILKIAMINLDK--ALVEGGYKTKMLLQV 831


>gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM10+]
 gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92]
 gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|384120608|ref|YP_005503228.1| DNA polymerase I [Yersinia pestis D106004]
 gi|384138000|ref|YP_005520702.1| DNA polymerase I [Yersinia pestis A1122]
 gi|384416569|ref|YP_005625931.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
 gi|420544025|ref|ZP_15042305.1| DNA polymerase I [Yersinia pestis PY-01]
 gi|420549705|ref|ZP_15047375.1| DNA polymerase I [Yersinia pestis PY-02]
 gi|420560395|ref|ZP_15056779.1| DNA polymerase I [Yersinia pestis PY-04]
 gi|420565839|ref|ZP_15061678.1| DNA polymerase I [Yersinia pestis PY-05]
 gi|420571301|ref|ZP_15066649.1| DNA polymerase I [Yersinia pestis PY-06]
 gi|420576581|ref|ZP_15071425.1| DNA polymerase I [Yersinia pestis PY-07]
 gi|420582034|ref|ZP_15076380.1| DNA polymerase I [Yersinia pestis PY-08]
 gi|420592458|ref|ZP_15085783.1| DNA polymerase I [Yersinia pestis PY-09]
 gi|420597790|ref|ZP_15090577.1| DNA polymerase I [Yersinia pestis PY-10]
 gi|420598026|ref|ZP_15090785.1| DNA polymerase I [Yersinia pestis PY-11]
 gi|420603500|ref|ZP_15095645.1| DNA polymerase I [Yersinia pestis PY-12]
 gi|420608858|ref|ZP_15100507.1| DNA polymerase I [Yersinia pestis PY-13]
 gi|420614435|ref|ZP_15105485.1| DNA polymerase I family protein [Yersinia pestis PY-14]
 gi|420619720|ref|ZP_15110092.1| DNA polymerase I [Yersinia pestis PY-15]
 gi|420624853|ref|ZP_15114736.1| DNA polymerase I [Yersinia pestis PY-16]
 gi|420634939|ref|ZP_15123833.1| DNA polymerase I [Yersinia pestis PY-19]
 gi|420635129|ref|ZP_15123996.1| DNA polymerase I [Yersinia pestis PY-25]
 gi|420640746|ref|ZP_15129066.1| DNA polymerase I [Yersinia pestis PY-29]
 gi|420650972|ref|ZP_15138348.1| DNA polymerase I [Yersinia pestis PY-32]
 gi|420651609|ref|ZP_15138902.1| DNA polymerase I [Yersinia pestis PY-34]
 gi|420656953|ref|ZP_15143729.1| DNA polymerase I [Yersinia pestis PY-36]
 gi|420662127|ref|ZP_15148347.1| DNA polymerase I [Yersinia pestis PY-42]
 gi|420672410|ref|ZP_15157672.1| DNA polymerase I family protein [Yersinia pestis PY-45]
 gi|420677790|ref|ZP_15162571.1| DNA polymerase I [Yersinia pestis PY-46]
 gi|420678137|ref|ZP_15162874.1| DNA polymerase I [Yersinia pestis PY-47]
 gi|420683438|ref|ZP_15167639.1| DNA polymerase I [Yersinia pestis PY-48]
 gi|420693865|ref|ZP_15176847.1| DNA polymerase I [Yersinia pestis PY-52]
 gi|420694173|ref|ZP_15177119.1| DNA polymerase I [Yersinia pestis PY-53]
 gi|420705727|ref|ZP_15186696.1| DNA polymerase I family protein [Yersinia pestis PY-54]
 gi|420710681|ref|ZP_15191215.1| DNA polymerase I [Yersinia pestis PY-55]
 gi|420716203|ref|ZP_15196106.1| DNA polymerase I [Yersinia pestis PY-56]
 gi|420716471|ref|ZP_15196341.1| DNA polymerase I [Yersinia pestis PY-58]
 gi|420722124|ref|ZP_15201148.1| DNA polymerase I [Yersinia pestis PY-59]
 gi|420727693|ref|ZP_15206091.1| DNA polymerase I [Yersinia pestis PY-60]
 gi|420737860|ref|ZP_15215275.1| DNA polymerase I [Yersinia pestis PY-61]
 gi|420738255|ref|ZP_15215618.1| DNA polymerase I [Yersinia pestis PY-63]
 gi|420743356|ref|ZP_15220211.1| DNA polymerase I [Yersinia pestis PY-64]
 gi|420749354|ref|ZP_15225224.1| DNA polymerase I [Yersinia pestis PY-65]
 gi|420760457|ref|ZP_15234575.1| DNA polymerase I [Yersinia pestis PY-66]
 gi|420760611|ref|ZP_15234694.1| DNA polymerase I [Yersinia pestis PY-71]
 gi|420765633|ref|ZP_15239240.1| DNA polymerase I [Yersinia pestis PY-72]
 gi|420770826|ref|ZP_15243888.1| DNA polymerase I [Yersinia pestis PY-76]
 gi|420776041|ref|ZP_15248609.1| DNA polymerase I [Yersinia pestis PY-88]
 gi|420781442|ref|ZP_15253347.1| DNA polymerase I [Yersinia pestis PY-89]
 gi|420786967|ref|ZP_15258170.1| DNA polymerase I family protein [Yersinia pestis PY-90]
 gi|420792449|ref|ZP_15263117.1| DNA polymerase I [Yersinia pestis PY-91]
 gi|420802870|ref|ZP_15272489.1| DNA polymerase I [Yersinia pestis PY-92]
 gi|420802973|ref|ZP_15272574.1| DNA polymerase I [Yersinia pestis PY-93]
 gi|420808238|ref|ZP_15277351.1| DNA polymerase I family protein [Yersinia pestis PY-94]
 gi|420813715|ref|ZP_15282246.1| DNA polymerase I [Yersinia pestis PY-95]
 gi|420819047|ref|ZP_15287103.1| DNA polymerase I [Yersinia pestis PY-96]
 gi|420829404|ref|ZP_15296402.1| DNA polymerase I [Yersinia pestis PY-98]
 gi|420829822|ref|ZP_15296761.1| DNA polymerase I [Yersinia pestis PY-99]
 gi|420834867|ref|ZP_15301310.1| DNA polymerase I [Yersinia pestis PY-100]
 gi|420845246|ref|ZP_15310725.1| DNA polymerase I [Yersinia pestis PY-101]
 gi|420845622|ref|ZP_15311051.1| DNA polymerase I [Yersinia pestis PY-102]
 gi|420850769|ref|ZP_15315681.1| DNA polymerase I [Yersinia pestis PY-103]
 gi|420856406|ref|ZP_15320392.1| DNA polymerase I [Yersinia pestis PY-113]
 gi|421761441|ref|ZP_16198241.1| DNA polymerase I [Yersinia pestis INS]
 gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM10+]
 gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92]
 gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004]
 gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
 gi|342853129|gb|AEL71682.1| DNA polymerase I [Yersinia pestis A1122]
 gi|391434738|gb|EIQ95899.1| DNA polymerase I [Yersinia pestis PY-02]
 gi|391434977|gb|EIQ96095.1| DNA polymerase I [Yersinia pestis PY-01]
 gi|391450511|gb|EIR10140.1| DNA polymerase I [Yersinia pestis PY-05]
 gi|391451018|gb|EIR10563.1| DNA polymerase I [Yersinia pestis PY-04]
 gi|391452375|gb|EIR11784.1| DNA polymerase I [Yersinia pestis PY-06]
 gi|391453481|gb|EIR12793.1| DNA polymerase I [Yersinia pestis PY-09]
 gi|391466715|gb|EIR24764.1| DNA polymerase I [Yersinia pestis PY-07]
 gi|391467365|gb|EIR25351.1| DNA polymerase I [Yersinia pestis PY-10]
 gi|391467553|gb|EIR25523.1| DNA polymerase I [Yersinia pestis PY-08]
 gi|391484596|gb|EIR40834.1| DNA polymerase I [Yersinia pestis PY-12]
 gi|391484982|gb|EIR41178.1| DNA polymerase I [Yersinia pestis PY-11]
 gi|391498899|gb|EIR53604.1| DNA polymerase I [Yersinia pestis PY-13]
 gi|391499180|gb|EIR53831.1| DNA polymerase I [Yersinia pestis PY-15]
 gi|391500256|gb|EIR54779.1| DNA polymerase I [Yersinia pestis PY-19]
 gi|391502336|gb|EIR56646.1| DNA polymerase I family protein [Yersinia pestis PY-14]
 gi|391513900|gb|EIR67062.1| DNA polymerase I [Yersinia pestis PY-16]
 gi|391516538|gb|EIR69427.1| DNA polymerase I [Yersinia pestis PY-25]
 gi|391517582|gb|EIR70370.1| DNA polymerase I [Yersinia pestis PY-32]
 gi|391529396|gb|EIR81090.1| DNA polymerase I [Yersinia pestis PY-29]
 gi|391532088|gb|EIR83519.1| DNA polymerase I [Yersinia pestis PY-34]
 gi|391535002|gb|EIR86121.1| DNA polymerase I family protein [Yersinia pestis PY-45]
 gi|391546567|gb|EIR96543.1| DNA polymerase I [Yersinia pestis PY-36]
 gi|391548382|gb|EIR98190.1| DNA polymerase I [Yersinia pestis PY-46]
 gi|391548809|gb|EIR98568.1| DNA polymerase I [Yersinia pestis PY-42]
 gi|391563323|gb|EIS11645.1| DNA polymerase I [Yersinia pestis PY-52]
 gi|391563540|gb|EIS11846.1| DNA polymerase I [Yersinia pestis PY-47]
 gi|391565484|gb|EIS13592.1| DNA polymerase I [Yersinia pestis PY-48]
 gi|391566715|gb|EIS14674.1| DNA polymerase I family protein [Yersinia pestis PY-54]
 gi|391578932|gb|EIS25125.1| DNA polymerase I [Yersinia pestis PY-55]
 gi|391579094|gb|EIS25267.1| DNA polymerase I [Yersinia pestis PY-53]
 gi|391580149|gb|EIS26179.1| DNA polymerase I [Yersinia pestis PY-56]
 gi|391606774|gb|EIS49467.1| DNA polymerase I [Yersinia pestis PY-60]
 gi|391608253|gb|EIS50765.1| DNA polymerase I [Yersinia pestis PY-61]
 gi|391608547|gb|EIS51023.1| DNA polymerase I [Yersinia pestis PY-58]
 gi|391609178|gb|EIS51603.1| DNA polymerase I [Yersinia pestis PY-59]
 gi|391622214|gb|EIS63169.1| DNA polymerase I [Yersinia pestis PY-63]
 gi|391623734|gb|EIS64470.1| DNA polymerase I [Yersinia pestis PY-66]
 gi|391631264|gb|EIS70914.1| DNA polymerase I [Yersinia pestis PY-64]
 gi|391632922|gb|EIS72400.1| DNA polymerase I [Yersinia pestis PY-65]
 gi|391643976|gb|EIS82075.1| DNA polymerase I [Yersinia pestis PY-71]
 gi|391647023|gb|EIS84706.1| DNA polymerase I [Yersinia pestis PY-72]
 gi|391656567|gb|EIS93188.1| DNA polymerase I [Yersinia pestis PY-76]
 gi|391664114|gb|EIS99880.1| DNA polymerase I [Yersinia pestis PY-88]
 gi|391669288|gb|EIT04428.1| DNA polymerase I [Yersinia pestis PY-89]
 gi|391670250|gb|EIT05309.1| DNA polymerase I family protein [Yersinia pestis PY-90]
 gi|391673402|gb|EIT08128.1| DNA polymerase I [Yersinia pestis PY-91]
 gi|391673777|gb|EIT08456.1| DNA polymerase I [Yersinia pestis PY-92]
 gi|391687906|gb|EIT21176.1| DNA polymerase I [Yersinia pestis PY-93]
 gi|391690645|gb|EIT23657.1| DNA polymerase I family protein [Yersinia pestis PY-94]
 gi|391691607|gb|EIT24519.1| DNA polymerase I [Yersinia pestis PY-98]
 gi|391702763|gb|EIT34613.1| DNA polymerase I [Yersinia pestis PY-95]
 gi|391705298|gb|EIT36863.1| DNA polymerase I [Yersinia pestis PY-96]
 gi|391706171|gb|EIT37631.1| DNA polymerase I [Yersinia pestis PY-101]
 gi|391717328|gb|EIT47706.1| DNA polymerase I [Yersinia pestis PY-99]
 gi|391721177|gb|EIT51138.1| DNA polymerase I [Yersinia pestis PY-100]
 gi|391732011|gb|EIT60637.1| DNA polymerase I [Yersinia pestis PY-102]
 gi|391735443|gb|EIT63583.1| DNA polymerase I [Yersinia pestis PY-103]
 gi|391737910|gb|EIT65756.1| DNA polymerase I [Yersinia pestis PY-113]
 gi|411177763|gb|EKS47775.1| DNA polymerase I [Yersinia pestis INS]
          Length = 932

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 131/246 (53%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYC 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF AG D H  TA  ++      V T Q       
Sbjct: 704  IMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQ------- 756

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 757  ----------------RRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 801  VLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 861  RAMIAV 866


>gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola]
 gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A]
 gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola]
 gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A]
          Length = 932

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 131/246 (53%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYC 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF AG D H  TA  ++      V T Q       
Sbjct: 704  IMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQ------- 756

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 757  ----------------RRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 801  VLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 861  RAMIAV 866


>gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
 gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
          Length = 923

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 151/305 (49%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+     + +  + E   +  L+  +I  L    ++ + G +H S N   T 
Sbjct: 602  YVTSEEVLESLKGKHEIVEKILEHRGLKKLLGTYIDALP-QLINPETGHIHTSFNQTVTA 660

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+    M++
Sbjct: 661  TGRLSSSNPNLQNIPVRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIE 720

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF+A  D H+ TA  +Y                          L+D    +R KAK  NF
Sbjct: 721  AFRANQDIHAATAAKIYKE-----------------------KLEDVTREQRSKAKTANF 757

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    +  +EAK+ +D ++     V  + ++  + +R   ++ T+  R 
Sbjct: 758  GIIYGISVFGLAERLGIDRKEAKELIDGYFENYPHVKEYMDSSIQAARQKGYIETVFRRR 817

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  R + +  K++LQV  
Sbjct: 818  RYLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMIRIYRRFREEGIRSKMILQVHD 877

Query: 1074 FFSFS 1078
              +FS
Sbjct: 878  ELNFS 882



 Score = 43.5 bits (101), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 43/186 (23%)

Query: 287 DGSSYTPPPKLVSFKRSNQKNPKNDAAEG------TGQNKKASENENSEKLEILRSKLAS 340
           D  + TPPP                +A+G      T ++ +ASEN N  KL+ L      
Sbjct: 290 DKKTATPPP----------------SAQGDLFGFFTPESTEASENSNLTKLDDL------ 327

Query: 341 FYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSG 400
               V     +   +K   +L N     + + DTE    D     P+   E++  S    
Sbjct: 328 ----VFDYQLIDTEEKEDQLLQNILTQPILSLDTETTGTD-----PI-RAELVGMSFAYA 377

Query: 401 PEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSG 460
               F      + V       + ++++F P FE+P   KV  N  +D  VL NYG+++ G
Sbjct: 378 ENQAF-----YVPVPADRTEAQRIVDKFKPVFENPQTLKVGQNIKYDMLVLANYGVEIQG 432

Query: 461 FHADTM 466
              DTM
Sbjct: 433 PMFDTM 438


>gi|403253516|ref|ZP_10919817.1| DNA polymerase I [Thermotoga sp. EMP]
 gi|402811050|gb|EJX25538.1| DNA polymerase I [Thermotoga sp. EMP]
          Length = 893

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/286 (36%), Positives = 154/286 (53%), Gaps = 30/286 (10%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQN 846
            + I  + E   I  L S +I  LP     V+ K GR+H S N   T TGRLS+  PNLQN
Sbjct: 589  EIIPLILEYRKIQKLKSTYIDALP---KMVNPKTGRIHASFNQTGTATGRLSSSDPNLQN 645

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
             P   ++  +IR+A +    N  IV ADY Q+ELRIL HL+  +++L AF+ G D H+ T
Sbjct: 646  LPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILTHLSGDENLLRAFEEGIDVHTLT 705

Query: 906  AMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            A  ++      V+  +V  E                   RR  KM+NFSI YG TP GL+
Sbjct: 706  ASRIF-----NVKPEEVTEEM------------------RRAGKMVNFSIIYGVTPYGLS 742

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
                V V+EA+K +  ++    +V  + +    E++   +V TL GR R  P + +  R+
Sbjct: 743  VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRN 802

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             +   ER AINTP+QG+AAD+   AM+EI +  + +++  K+++QV
Sbjct: 803  TQAEGERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQV 848



 Score = 48.5 bits (114), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 104/259 (40%), Gaps = 59/259 (22%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           +++L +     EDP  K V  N  FD  VL   G++    H DTM  A L + +   E  
Sbjct: 364 KEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPHFDTMIAAYLLEPN---EKK 420

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTI 541
           ++L+ L    K +     +YQ+ MS  +   GF    S  D+                  
Sbjct: 421 FNLDDLA--LKFLGYKMTSYQELMSFSSPLFGF----SFADV------------------ 456

Query: 542 APVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEY 601
            PVE+          +YS  D+  T +LYK L  KL E   +            + + + 
Sbjct: 457 -PVEKAA--------NYSCEDADITYRLYKILSLKLHEADLE------------NVFYKI 495

Query: 602 WQPFGEILVKMETEGMLVDREYLSEI-EKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
             P   +L +ME  G+ VD E+L ++ E+  +  +E A   +R             N+ S
Sbjct: 496 EMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEP-------FNINS 548

Query: 661 DTQLRQLLF---GGKPNSK 676
             Q+ ++LF   G KP  K
Sbjct: 549 PKQVSRILFEKLGIKPRGK 567


>gi|385786657|ref|YP_005817766.1| DNA polymerase I [Erwinia sp. Ejp617]
 gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617]
          Length = 929

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/248 (37%), Positives = 135/248 (54%), Gaps = 27/248 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    ++  +GRVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA  G+ 
Sbjct: 644  LPLM---INPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHR 700

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF +  D H  TA  ++         G  L +  G
Sbjct: 701  IVAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVF---------GVSLDKVSG 751

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 752  E--------------QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 797

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E+ ++ +    +V TL GR    P IK+    +R   ERAAIN P+QG+AAD+  
Sbjct: 798  VLQYMESTRELAAQKGYVSTLDGRRLYLPDIKASNAMRRKAAERAAINAPMQGTAADIIK 857

Query: 1049 CAMLEISK 1056
             AM+ + +
Sbjct: 858  RAMIAVDR 865



 Score = 43.1 bits (100), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           D+L    P  EDP  +KV  N  FD  VL+ Y +++ G   DTM
Sbjct: 400 DVLARLKPLLEDPQAQKVGQNLKFDRGVLKRYDIELQGIRFDTM 443


>gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4]
 gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4]
          Length = 949

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 154/305 (50%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+       +  + E   +  L+  +I  L    ++ + GRVH S N   T 
Sbjct: 628  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 686

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 687  TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +  D H+ TA  +Y      ++                  LKD  +  RRKAK  NF
Sbjct: 747  AFLSNHDIHAATAAKIY-----KID------------------LKDVGSDMRRKAKTANF 783

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++     V  + +   + ++   +V T+  R 
Sbjct: 784  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRK 843

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + +  K++LQV  
Sbjct: 844  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHD 903

Query: 1074 FFSFS 1078
              +FS
Sbjct: 904  ELNFS 908



 Score = 41.2 bits (95), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 26/43 (60%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++NEF P FE+ +  KV  N  +D  VL+NYG  V G   DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLFDTM 464


>gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737]
          Length = 830

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 158/316 (50%), Gaps = 33/316 (10%)

Query: 757  LDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSN 816
            L   G TE+T  +   A+  ++       REA   +  + E   +  L S +I PL    
Sbjct: 498  LPPIGKTEKTGKRSTSAAVLELL------REAHPIVGRILEYRELMKLKSTYIDPLP-RL 550

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  K GR+H   N   T TGRLS+  PNLQN P       +IR+AFIA  G+ L+  DY 
Sbjct: 551  VHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFIAEEGHLLVALDYS 610

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAHL+  ++++  F+ G D H+ TA  M+                     PP  
Sbjct: 611  QIELRVLAHLSGDENLIRVFREGKDIHTETAAWMF-------------------GVPP-- 649

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
              +    + RR AK +NF + YG +   L+++  +  EEA   ++ ++    +V  W   
Sbjct: 650  --EGVDGAMRRAAKTVNFGVLYGMSAHRLSQELSIPYEEAAAFIERYFQSFPKVRAWIAK 707

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E R   +V TL GR R  P + +  +S R   ER A N PVQG+AAD+   AM+++ 
Sbjct: 708  TLEEGRKKGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF 767

Query: 1056 KNARLKELGWKLLLQV 1071
               RL+ LG ++LLQV
Sbjct: 768  P--RLRPLGVRILLQV 781


>gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
 gi|212674099|gb|EEB34582.1| DNA-directed DNA polymerase [Desulfovibrio piger ATCC 29098]
          Length = 919

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/281 (35%), Positives = 149/281 (53%), Gaps = 26/281 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            + ++ +   ++ + S ++ PL    +    GR+H + N   T TGRLS+  PNLQN P  
Sbjct: 612  VDSILQYRKLEKMRSTYLDPL--PRLVDPQGRIHTTFNQKATATGRLSSSNPNLQNIPVR 669

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
                 ++R  FIA PG  L+ ADY Q+ELR+LAH++   ++L+AF+ G D H+RTA  +Y
Sbjct: 670  GPLGKRMRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALLEAFRNGEDIHARTAALVY 729

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                               D PP  +  D    +RR AK +NF + YG     LA++ K+
Sbjct: 730  -------------------DLPPDQVSPD----QRRNAKTINFGLIYGMGAQKLAQELKI 766

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
            S  +AK  +  ++   Q +  + E  +  +R    V TL GR R  P I S +       
Sbjct: 767  STTQAKDFIARYFERLQGLKEFYEGVEASARKHGFVTTLGGRRRLLPDINSASGQAAALA 826

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             R AINT +QGSAAD+   AML ++++ RL+EL  +LLLQV
Sbjct: 827  RRQAINTVIQGSAADIIKLAMLAVARDERLRELDARLLLQV 867


>gi|383115770|ref|ZP_09936525.1| DNA polymerase I [Bacteroides sp. D2]
 gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2]
          Length = 949

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 154/305 (50%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+       +  + E   +  L+  +I  L    ++ + GRVH S N   T 
Sbjct: 628  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 686

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 687  TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +  D H+ TA  +Y      ++                  LKD  +  RRKAK  NF
Sbjct: 747  AFLSNHDIHAATAAKVY-----KID------------------LKDVGSDMRRKAKTANF 783

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++     V  + +   + ++   +V T+  R 
Sbjct: 784  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRK 843

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + +  K++LQV  
Sbjct: 844  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHD 903

Query: 1074 FFSFS 1078
              +FS
Sbjct: 904  ELNFS 908



 Score = 41.2 bits (95), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 26/43 (60%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++NEF P FE+ +  KV  N  +D  VL+NYG  V G   DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLFDTM 464


>gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
 gi|189433083|gb|EDV02068.1| DNA-directed DNA polymerase [Bacteroides coprocola DSM 17136]
          Length = 954

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 151/307 (49%), Gaps = 33/307 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LPL    ++ K G +H S N   
Sbjct: 633  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALPLL---INPKTGHIHTSFNQTV 689

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+    M
Sbjct: 690  TATGRLSSSNPNLQNIPIRNEDGKEIRRAFIPDEGCEFFSADYSQIELRIMAHLSGDPHM 749

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AF+ G D H+ TA  +Y                          L+D    +R KAK  
Sbjct: 750  IEAFQKGQDIHAATAAKIYKE-----------------------KLEDVTREQRSKAKTA 786

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    +  +EAK+ +D ++     V  + +   + ++   ++ T+  
Sbjct: 787  NFGIIYGISVFGLAERLNIERKEAKELIDGYFENYPHVKEYMDQSIRLAQEKGYIETIFK 846

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I K    + +  K++LQV
Sbjct: 847  RKRYLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMIRIYKRFMEEGIRSKMILQV 906

Query: 1072 LFFFSFS 1078
                +FS
Sbjct: 907  HDELNFS 913


>gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
 gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
          Length = 980

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/292 (34%), Positives = 143/292 (48%), Gaps = 28/292 (9%)

Query: 823  RVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S  +  T TGRLS+  PN+QN P    +  KIR AF+A PGN LI ADY Q+ELR+
Sbjct: 702  RVHTSFAMAATTTGRLSSSDPNIQNIPVRTAEGRKIRTAFVAEPGNVLISADYSQIELRV 761

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+AN   +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 762  LAHVANIPQLTQAFADGVDIHAMTASEMF----------------------GVPI--EGM 797

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + +A K E+
Sbjct: 798  PSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIRKYFERFPGIKDYMDATKAEA 857

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            + + +V T+ GR   +P I+S     R   ERAAIN P+QGSAAD+   AM+ +      
Sbjct: 858  KENGYVTTIFGRRAHYPEIRSSNPQVRAFNERAAINAPIQGSAADIIRRAMVRMEPALEA 917

Query: 1061 KELGWKLLLQVL--FFFSFSFFSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
              +  ++LLQV     F  +      I+     V+ NA  P    +  L  D
Sbjct: 918  AGMQARMLLQVHDELIFETAEADADKIIPVIVEVMENAAMPAIDMAVPLQVD 969



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 112/264 (42%), Gaps = 69/264 (26%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           R  L+E     E+P++ K+  N  +D  V+  + +++  F  DTM ++ + D+    +GG
Sbjct: 448 RAALDELKALLEEPAVLKIGQNLKYDMLVMAQHNIEIKSFD-DTMLLSYVLDAG---QGG 503

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++AL+                       E ++G   I  KD+ G  K     SA   +
Sbjct: 504 HGMDALS-----------------------ERWLGHKTIGYKDVTGSGK-----SAIPFA 535

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
            +A          +   +Y+A D+  TL+L+ +LK +L+             + M   Y+
Sbjct: 536 QVA---------IDKATAYAAEDAEVTLRLWHALKVRLVS------------EGMTSVYE 574

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L++ME  G+ VDR+ LS +         A     ++ A ++       NVG
Sbjct: 575 RLERPLAPVLMRMEQRGIRVDRQILSRLSGELAQGAAALEAEIQELAGEN------FNVG 628

Query: 660 SDTQLRQLLFGGKPNSKDDSESLP 683
           S  QL ++LF        D  SLP
Sbjct: 629 SPKQLGEILF--------DKMSLP 644


>gi|343526348|ref|ZP_08763298.1| DNA-directed DNA polymerase [Streptococcus constellatus subsp.
            pharyngis SK1060 = CCUG 46377]
 gi|343394299|gb|EGV06847.1| DNA-directed DNA polymerase [Streptococcus constellatus subsp.
            pharyngis SK1060 = CCUG 46377]
          Length = 881

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + +++AF+
Sbjct: 622  SVDPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDEHLIEAFR 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRRDI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +    +    ++LLQV
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALTDRNFKTRMLLQV 833


>gi|336413076|ref|ZP_08593429.1| hypothetical protein HMPREF1017_00537 [Bacteroides ovatus 3_8_47FAA]
 gi|335943122|gb|EGN04964.1| hypothetical protein HMPREF1017_00537 [Bacteroides ovatus 3_8_47FAA]
          Length = 960

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 154/305 (50%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+       +  + E   +  L+  +I  L    ++ + GRVH S N   T 
Sbjct: 639  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 697

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 698  TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 757

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +  D H+ TA  +Y      ++                  LKD  +  RRKAK  NF
Sbjct: 758  AFLSNHDIHAATAAKVY-----KID------------------LKDVGSDMRRKAKTANF 794

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++     V  + +   + ++   +V T+  R 
Sbjct: 795  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRK 854

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + +  K++LQV  
Sbjct: 855  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHD 914

Query: 1074 FFSFS 1078
              +FS
Sbjct: 915  ELNFS 919



 Score = 41.2 bits (95), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 26/43 (60%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++NEF P FE+ +  KV  N  +D  VL+NYG  V G   DTM
Sbjct: 433 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLFDTM 475


>gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
            serovar 12 str. 1096]
 gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
            serovar 12 str. 1096]
          Length = 957

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 155/306 (50%), Gaps = 32/306 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   ++ A +       L E   +  L S +   LPL    ++ K GRVH 
Sbjct: 633  KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INPKTGRVHT 687

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 688  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHL 747

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN + M+ AF  G D H  TA  ++    + V + Q                       R
Sbjct: 748  ANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ-----------------------R 784

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S  +AKK ++ ++     V  +    ++ +    +
Sbjct: 785  RSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGY 844

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TL GR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I K  R  E   
Sbjct: 845  VETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NI 903

Query: 1066 KLLLQV 1071
            K+++QV
Sbjct: 904  KMIMQV 909


>gi|347752916|ref|YP_004860481.1| DNA polymerase I [Bacillus coagulans 36D1]
 gi|347585434|gb|AEP01701.1| DNA polymerase I [Bacillus coagulans 36D1]
          Length = 875

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/268 (34%), Positives = 152/268 (56%), Gaps = 31/268 (11%)

Query: 812  LQGSNVSG------KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
            LQ + + G      ++G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+  
Sbjct: 583  LQSTYIEGLLKVVHQDGKVHTRFNQALTQTGRLSSTDPNLQNIPIRMEEGRKIRQAFVPS 642

Query: 865  PGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
                LI + DY Q+ELR+LAH++  + +++AF+ G D H++TAM ++ H++    T ++ 
Sbjct: 643  EEGWLIFSSDYSQVELRVLAHISGDEKLIEAFREGMDIHTKTAMEVF-HVKAEEVTSEM- 700

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                                 RR+AK +NF I YG +  GL+++  +S +EA + +  ++
Sbjct: 701  ---------------------RRQAKTVNFGIVYGISDYGLSQNLGISRKEAGEFIKRYF 739

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 V  + +   +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSA
Sbjct: 740  ASYPRVKEYMDEIVREAKQKGYVSTLLKRRRYLPEITSRNFNLRSFAERTAMNTPIQGSA 799

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AD+   AM++++K  + ++L  +LLLQV
Sbjct: 800  ADIIKKAMIDMAKRLKKEKLRARLLLQV 827


>gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000]
 gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000]
          Length = 982

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 137/258 (53%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + ++   GRVH S  +  T TGRLS+  PNLQN P   ++  KIR+AF+A PG+ LI AD
Sbjct: 696  AAIAPSTGRVHTSYALAATTTGRLSSSDPNLQNIPVRTEEGRKIRKAFVAAPGHVLISAD 755

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+ +   +  AF+ G D H+ TA  M+      +E         G D   
Sbjct: 756  YSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMF---DTPIE---------GMD--- 800

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             P++       RR+AK +NF I YG +  GLA    +S  EA   +  ++     +  + 
Sbjct: 801  -PMI-------RRRAKAINFGIVYGISAFGLANQLGISQGEAGAYIKTYFERFPGIQAYM 852

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            +A K   R   +V T+ GR    P I++ + + R   ERAAIN P+QG+AADV   AM+ 
Sbjct: 853  DATKAFVREHGYVTTIFGRKINIPDIEAKSAAHRQFAERAAINAPIQGAAADVMRRAMIR 912

Query: 1054 ISKNARLKELGWKLLLQV 1071
            +        L  ++LLQV
Sbjct: 913  MPVALEAAGLSTRMLLQV 930


>gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223]
 gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223]
          Length = 921

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/248 (37%), Positives = 129/248 (52%), Gaps = 27/248 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 636  LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRK 692

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++    + V T Q       
Sbjct: 693  ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQ------- 745

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR+AK +NF + YG +  GLAR   +   EA+  +D ++     
Sbjct: 746  ----------------RRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQTYIDTYFARYPG 789

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+  
Sbjct: 790  VLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERAAINAPMQGTAADIIK 849

Query: 1049 CAMLEISK 1056
             AM+ I++
Sbjct: 850  KAMINIAQ 857



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 63/264 (23%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
           L +  P  EDP +KKV  N  +D  +L N G+K+ G   DTM  + +++S  SR    G 
Sbjct: 394 LEKLRPLLEDPKLKKVGQNLKYDISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGL 453

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
           +L+ L                    G+ +      IS ++I G+   +   +   + T A
Sbjct: 454 ALKYL--------------------GHKN------ISFEEIAGKGAKQLTFNQIPLETAA 487

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
           P              Y+A D+  TL+L++ L        W    K     +MF    E  
Sbjct: 488 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELAAMF---TEVE 522

Query: 603 QPFGEILVKMETEGMLVDREYLS-EIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            P  ++L  +E +G+L+D   L  + +++AR      ++   + A       +  N+GS 
Sbjct: 523 LPLIQVLSDIERQGVLIDSMLLGQQSDELAR-----KIDTLEEKAYDIA--GEKFNLGSP 575

Query: 662 TQLRQLLFG--GKPNSKDDSESLP 683
            QL+ L F   G P +K   +  P
Sbjct: 576 KQLQVLFFEKLGYPITKKTPKGAP 599


>gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185]
 gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185]
          Length = 935

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/248 (37%), Positives = 129/248 (52%), Gaps = 27/248 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 650  LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRK 706

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++    + V T Q       
Sbjct: 707  ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQ------- 759

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR+AK +NF + YG +  GLAR   +   EA+  +D ++     
Sbjct: 760  ----------------RRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQTYIDTYFARYPG 803

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+  
Sbjct: 804  VLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERAAINAPMQGTAADIIK 863

Query: 1049 CAMLEISK 1056
             AM+ I++
Sbjct: 864  KAMINIAQ 871



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 63/264 (23%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
           L +  P  EDP +KKV  N  +D  +L N G+K+ G   DTM  + +++S  SR    G 
Sbjct: 408 LEKLRPLLEDPKLKKVGQNLKYDISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGL 467

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
           +L+ L                    G+ +      IS ++I G+   +   +   + T A
Sbjct: 468 ALKYL--------------------GHKN------ISFEEIAGKGAKQLTFNQIPLETAA 501

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
           P              Y+A D+  TL+L++ L        W    K     +MF    E  
Sbjct: 502 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELAAMF---TEVE 536

Query: 603 QPFGEILVKMETEGMLVDREYLS-EIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            P  ++L  +E +G+L+D   L  + +++AR      ++   + A       +  N+GS 
Sbjct: 537 LPLIQVLSDIERQGVLIDSMLLGQQSDELAR-----KIDTLEEKAYDIA--GEKFNLGSP 589

Query: 662 TQLRQLLFG--GKPNSKDDSESLP 683
            QL+ L F   G P +K   +  P
Sbjct: 590 KQLQVLFFEKLGYPITKKTPKGAP 613


>gi|405377039|ref|ZP_11030987.1| DNA polymerase I [Rhizobium sp. CF142]
 gi|397326463|gb|EJJ30780.1| DNA polymerase I [Rhizobium sp. CF142]
          Length = 999

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 136/254 (53%), Gaps = 30/254 (11%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 719  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISSPGHKLISADYSQIELRV 778

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    ++ AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 779  LAHVAEIPQLVRAFEDGIDIHAMTASEMF---------GVPVEGMPGE------------ 817

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK+ +R
Sbjct: 818  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKQMAR 875

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 876  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LA 933

Query: 1062 ELGW----KLLLQV 1071
            E G     ++LLQV
Sbjct: 934  EAGLADRVRMLLQV 947



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 61/250 (24%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D L+      ED SI KV  N  +D  +++ YG++   F  DTM ++ + D+     G +
Sbjct: 466 DALSRLKALLEDESILKVAQNLKYDYLLMKRYGIETKSFD-DTMLISYVLDAG---TGAH 521

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIST 540
            ++ L+                       E F+G   I+ KD+ G         +GK + 
Sbjct: 522 GMDPLS-----------------------EKFLGHTPIAYKDVAG---------SGKSNV 549

Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
              + +++R        Y+A D+  TL+L+  LK +L                +   Y+ 
Sbjct: 550 TFDLVDIERATH-----YAAEDADVTLRLWMVLKPRL------------AATQLTRVYER 592

Query: 601 YWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGS 660
             +P   +L +ME  G+ VDR+ LS      R   E A    R     +    +  N+GS
Sbjct: 593 LERPLVPVLARMEARGITVDRQILS------RLSGELAQGAARYEDEIYQLAGERFNIGS 646

Query: 661 DTQLRQLLFG 670
             QL  +LFG
Sbjct: 647 PKQLGDILFG 656


>gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
 gi|198273174|gb|EDY97443.1| DNA-directed DNA polymerase [Bacteroides plebeius DSM 17135]
          Length = 931

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 152/307 (49%), Gaps = 29/307 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+     + +  + E   +  L+  +I  L    ++   GR+H S N   T 
Sbjct: 610  YVTSEEVLESLRGKHEIVGKILEHRGLKKLLGTYIDALP-QLINPATGRIHTSFNQTVTA 668

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+N   M++
Sbjct: 669  TGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSNDPHMIE 728

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF+   D H+ TA  +Y          +V LE             +    +R KAK  NF
Sbjct: 729  AFQKDQDIHAATAAKIY----------KVKLE-------------EVTREQRSKAKTANF 765

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK  +D ++     V  + +   +E+R   ++ T+  R 
Sbjct: 766  GIIYGISVFGLAERLNVDRKEAKALIDGYFENYPNVKAYMDQSIQEAREKGYIETIFKRK 825

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM+ I +  + + +  K++LQV  
Sbjct: 826  RYLPDINSKNAVVRGYAERNAINAPIQGSAADIIKVAMIRIYQRFQEEGIRSKMILQVHD 885

Query: 1074 FFSFSFF 1080
              +FS  
Sbjct: 886  ELNFSVL 892


>gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121]
 gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121]
          Length = 925

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/253 (36%), Positives = 134/253 (52%), Gaps = 24/253 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            K GR+H S +   T TGRLS+  PNLQN P    +  +IRQAFIA  G  LI ADY Q+E
Sbjct: 648  KTGRIHTSYHQAVTATGRLSSTDPNLQNIPIRTAEGRRIRQAFIAPEGYKLIAADYSQIE 707

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LRI++HL+    +L+AF    D H  TA  ++    + V TG+                 
Sbjct: 708  LRIMSHLSQDPGLLEAFANNKDVHKATAAEVFEVALDEV-TGE----------------- 749

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                 +RR+AK +NF + YG +  GLA+   +   EA+K +  ++     V T+ E  ++
Sbjct: 750  -----QRRRAKAINFGLIYGMSAFGLAKQLGIGRPEAQKYIQRYFERYPGVRTYMENTRE 804

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +R   +V TL GR    P IK+     R   ER AIN P+QG+AAD+   AM+E+    
Sbjct: 805  MAREKGYVETLFGRRLYLPDIKASNAMMRQAAERTAINAPMQGTAADIIKRAMIEMHAWL 864

Query: 1059 RLKELGWKLLLQV 1071
            +  +L  K++LQV
Sbjct: 865  KDTDLDIKMILQV 877



 Score = 48.5 bits (114), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 59/248 (23%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L +  P  ED S  KV  +  +D +VL NY +++ G   DTM  + +++S   T   + 
Sbjct: 399 VLEQIKPVLEDASQLKVGQHLKYDANVLANYDIELKGIEFDTMLESYIFNS---TANRHD 455

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L   +K +S    ++++   KG   + F                             
Sbjct: 456 MDSLA--KKFLSHKSVSFEEIAGKGAKQKTF----------------------------- 484

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYW 602
                + E E    Y+A D+  T +L++++        W KL+  P     +   ++E  
Sbjct: 485 ----NQIELEQAAFYAAEDADITFRLHQAI--------WAKLEKTP----ELVSIFKEIE 528

Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK-HCPDAKYMNVGSD 661
            P   +L KME  G L+D + L E       +      R  +   K H    +  N+ S 
Sbjct: 529 LPLVPVLAKMEQTGALIDPDLLHE-------QSSEIATRLEELEIKAHEMAGQAFNLSSP 581

Query: 662 TQLRQLLF 669
            QL+++LF
Sbjct: 582 KQLQEILF 589


>gi|424865266|ref|ZP_18289135.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86B]
 gi|400758872|gb|EJP73072.1| DNA-directed DNA polymerase [SAR86 cluster bacterium SAR86B]
          Length = 891

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 156/304 (51%), Gaps = 28/304 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            KG  ++N +      E  E    I     +  + S  ++ ++ L+      K+ R+H S 
Sbjct: 567  KGQPSTNEETLKRLAEEYELPKVILEYRSLAKLKSTYTDSLVALENP----KSLRIHTSY 622

Query: 829  N-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            +   T TGRLS+  PNLQN P    +  KIR+AF+   GN+LI ADY Q+ELRI+AHL+ 
Sbjct: 623  HQAITSTGRLSSTEPNLQNIPIKTAEGRKIREAFVPEQGNTLIAADYSQIELRIMAHLSK 682

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             K++L+AF    D HS TA  ++                 G D      LK+    +RR 
Sbjct: 683  DKNLLNAFTNNIDVHSSTAAEVF-----------------GVD------LKEVSIDQRRS 719

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF + YG T  GL R   +S  EA++ +D ++     V T+ E  ++ ++   +V 
Sbjct: 720  AKAINFGLMYGMTAFGLTRQLDISRAEAQQYLDTYFERYTGVKTYMENIRQSAKQKEYVE 779

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T++GR      I S    +R   ERAAIN P+QGSAAD+   AM+++    + +    K+
Sbjct: 780  TIMGRRLYVKEINSGNGLRRQAAERAAINAPLQGSAADIIKKAMIDVDLFIKDEMPELKM 839

Query: 1068 LLQV 1071
            ++QV
Sbjct: 840  IMQV 843


>gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
 gi|423290815|ref|ZP_17269664.1| DNA polymerase I [Bacteroides ovatus CL02T12C04]
 gi|156111108|gb|EDO12853.1| DNA-directed DNA polymerase [Bacteroides ovatus ATCC 8483]
 gi|392664680|gb|EIY58217.1| DNA polymerase I [Bacteroides ovatus CL02T12C04]
          Length = 949

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 154/305 (50%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+       +  + E   +  L+  +I  L    ++ + GRVH S N   T 
Sbjct: 628  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 686

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 687  TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +  D H+ TA  +Y      ++                  LKD  +  RRKAK  NF
Sbjct: 747  AFLSNHDIHAATAAKVY-----KID------------------LKDVGSDMRRKAKTANF 783

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++     V  + +   + ++   +V T+  R 
Sbjct: 784  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRK 843

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + +  K++LQV  
Sbjct: 844  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHD 903

Query: 1074 FFSFS 1078
              +FS
Sbjct: 904  ELNFS 908



 Score = 41.2 bits (95), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 26/43 (60%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++NEF P FE+ +  KV  N  +D  VL+NYG  V G   DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLFDTM 464


>gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155]
 gi|386338986|ref|YP_006035352.1| DNA polymerase I [Shewanella baltica OS117]
 gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155]
 gi|334861387|gb|AEH11858.1| DNA polymerase I [Shewanella baltica OS117]
          Length = 921

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/248 (37%), Positives = 129/248 (52%), Gaps = 27/248 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 636  LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRK 692

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++    + V T Q       
Sbjct: 693  ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQ------- 745

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR+AK +NF + YG +  GLAR   +   EA+  +D ++     
Sbjct: 746  ----------------RRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQTYIDTYFARYPG 789

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+  
Sbjct: 790  VLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERAAINAPMQGTAADIIK 849

Query: 1049 CAMLEISK 1056
             AM+ I++
Sbjct: 850  KAMINIAQ 857



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 63/264 (23%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
           L +  P  EDP +KKV  N  +D  +L N G+K+ G   DTM  + +++S  SR    G 
Sbjct: 394 LEKLRPLLEDPKLKKVGQNLKYDISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGL 453

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
           +L+ L                    G+ +      IS ++I G+   +   +   + T A
Sbjct: 454 ALKYL--------------------GHKN------ISFEEIAGKGAKQLTFNQIPLETAA 487

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
           P              Y+A D+  TL+L++ L        W    K     +MF    E  
Sbjct: 488 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELAAMF---TEVE 522

Query: 603 QPFGEILVKMETEGMLVDREYLS-EIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            P  ++L  +E +G+L+D   L  + +++AR      ++   + A       +  N+GS 
Sbjct: 523 LPLIQVLSDIERQGVLIDSMLLGQQSDELAR-----KIDTLEEKAYDIA--GEKFNLGSP 575

Query: 662 TQLRQLLFG--GKPNSKDDSESLP 683
            QL+ L F   G P +K   +  P
Sbjct: 576 KQLQVLFFEKLGYPITKKTPKGAP 599


>gi|373947471|ref|ZP_09607432.1| DNA polymerase I [Shewanella baltica OS183]
 gi|386326680|ref|YP_006022797.1| DNA polymerase I [Shewanella baltica BA175]
 gi|333820825|gb|AEG13491.1| DNA polymerase I [Shewanella baltica BA175]
 gi|373884071|gb|EHQ12963.1| DNA polymerase I [Shewanella baltica OS183]
          Length = 921

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/248 (37%), Positives = 129/248 (52%), Gaps = 27/248 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 636  LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRK 692

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++    + V T Q       
Sbjct: 693  ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQ------- 745

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR+AK +NF + YG +  GLAR   +   EA+  +D ++     
Sbjct: 746  ----------------RRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQTYIDTYFARYPG 789

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+  
Sbjct: 790  VLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERAAINAPMQGTAADIIK 849

Query: 1049 CAMLEISK 1056
             AM+ I++
Sbjct: 850  KAMINIAQ 857



 Score = 48.9 bits (115), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 63/264 (23%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
           L +  P  EDP +KKV  N  +D  +L N G+K+ G   DTM  + +++S  SR    G 
Sbjct: 394 LEKLRPLLEDPKLKKVGQNLKYDISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGL 453

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
           +L+ L                    G+ +      IS ++I G+   +   +   + T A
Sbjct: 454 ALKYL--------------------GHKN------ISFEEIAGKGAKQLTFNQIPLETAA 487

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
           P              Y+A D+  TL+L++ L        W    K     +MF    E  
Sbjct: 488 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELAAMF---IEVE 522

Query: 603 QPFGEILVKMETEGMLVDREYLS-EIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            P  ++L  +E +G+L+D   L  + +++AR      ++   + A       +  N+GS 
Sbjct: 523 LPLIQVLSDIERQGVLIDSMLLGQQSDELAR-----KIDTLEEKAYDIA--GEKFNLGSP 575

Query: 662 TQLRQLLFG--GKPNSKDDSESLP 683
            QL+ L F   G P +K   +  P
Sbjct: 576 KQLQVLFFEKLGYPITKKTPKGAP 599


>gi|422459763|ref|ZP_16536411.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2]
 gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2]
          Length = 892

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 831  AEAALTSRVLLQV 843


>gi|12229815|sp|Q9S1G2.1|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I
 gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum]
          Length = 1016

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 135/254 (53%), Gaps = 30/254 (11%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 736  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 795

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 796  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 834

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 835  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 892

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 893  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LV 950

Query: 1062 ELGW----KLLLQV 1071
            E+G     ++LLQV
Sbjct: 951  EVGLADRVRMLLQV 964



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 102/256 (39%), Gaps = 71/256 (27%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED S+ KV  N  +D  +L+ YG++   F  DTM ++ + D+     G 
Sbjct: 482 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETRSFD-DTMLISYVLDAG---TGA 537

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +GK +
Sbjct: 538 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 565

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 566 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 608

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
              +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++         
Sbjct: 609 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 659

Query: 655 YMNVGSDTQLRQLLFG 670
             N+GS  QL  +LFG
Sbjct: 660 --NIGSPKQLGDILFG 673


>gi|424889177|ref|ZP_18312780.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2012]
 gi|393174726|gb|EJC74770.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2012]
          Length = 999

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 137/260 (52%), Gaps = 30/260 (11%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  +  RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY 
Sbjct: 713  VHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 772

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A    +  AF+ G D H+ TA  M+         G  +    GE      
Sbjct: 773  QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------ 817

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+
Sbjct: 818  --------VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMES 869

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            RK  +R   +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM+++ 
Sbjct: 870  RKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKME 929

Query: 1056 KNARLKELGW----KLLLQV 1071
                L E+G     ++LLQV
Sbjct: 930  PA--LAEVGLGDRVRMLLQV 947



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 102/256 (39%), Gaps = 71/256 (27%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED ++ KV  N  +D  +++ YG++   F  DTM ++ + D+     G 
Sbjct: 465 RDALPRLKALLEDAAVLKVAQNLKYDYLLMKRYGVETRSFD-DTMLISYVLDAG---TGA 520

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  K++ G         +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIPYKEVAG---------SGKAN 548

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 549 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 591

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
              +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++         
Sbjct: 592 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 642

Query: 655 YMNVGSDTQLRQLLFG 670
             N+GS  QL  +LFG
Sbjct: 643 --NIGSPKQLGDILFG 656


>gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581]
 gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581]
          Length = 922

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 129/239 (53%), Gaps = 24/239 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V    GR+H S +   T TGRLS+  PNLQN P   +   +IRQAF+A PG  L+ ADY 
Sbjct: 642  VDPTTGRLHTSYHQAVTATGRLSSSDPNLQNIPIRTEQGRRIRQAFVARPGYRLVAADYS 701

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +LDAF  G D H+ TA  ++         G  L +  GE      
Sbjct: 702  QIELRIMAHLSGDKGLLDAFAQGRDIHAATAAEVF---------GVALDKVSGE------ 746

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                    +RR AK +NF + YG +  GL R   +   +A+  +D +++    V  + E 
Sbjct: 747  --------QRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQIYIDRYFDRYPGVARYMER 798

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             + ++  D +V T+ GR    P I S  R++R   ER AIN P+QG+AAD+   AM+++
Sbjct: 799  IRAQAAEDGYVETVFGRRLHLPEIHSQNRNRRQGAERTAINAPMQGTAADIIKRAMIDV 857


>gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
            serovar 10 str. D13039]
 gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
            serovar 10 str. D13039]
          Length = 957

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 155/306 (50%), Gaps = 32/306 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   ++ A +       L E   +  L S +   LPL    ++ K GRVH 
Sbjct: 633  KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INQKTGRVHT 687

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 688  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHL 747

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN + M+ AF  G D H  TA  ++    + V + Q                       R
Sbjct: 748  ANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ-----------------------R 784

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S  +AKK ++ ++     V  +    ++ +    +
Sbjct: 785  RSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGY 844

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TL GR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I K  R  E   
Sbjct: 845  VETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NI 903

Query: 1066 KLLLQV 1071
            K+++QV
Sbjct: 904  KMIMQV 909


>gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
            Femo]
 gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
            Femo]
 gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
          Length = 957

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 155/306 (50%), Gaps = 32/306 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   ++ A +       L E   +  L S +   LPL    ++ K GRVH 
Sbjct: 633  KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INPKTGRVHT 687

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 688  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHL 747

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN + M+ AF  G D H  TA  ++    + V + Q                       R
Sbjct: 748  ANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ-----------------------R 784

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S  +AKK ++ ++     V  +    ++ +    +
Sbjct: 785  RSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGY 844

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TL GR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I K  R  E   
Sbjct: 845  VETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NI 903

Query: 1066 KLLLQV 1071
            K+++QV
Sbjct: 904  KMIMQV 909


>gi|384124487|ref|YP_005507101.1| DNA polymerase I, partial [Yersinia pestis D182038]
 gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038]
          Length = 750

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 131/246 (53%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 465  LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYC 521

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF AG D H  TA  ++      V T Q       
Sbjct: 522  IMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQ------- 574

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 575  ----------------RRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPG 618

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 619  VLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIK 678

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 679  RAMIAV 684


>gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217]
 gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217]
          Length = 921

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/247 (37%), Positives = 128/247 (51%), Gaps = 27/247 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+G  GRVH S +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 636  LPLM---VNGTTGRVHTSYHQANAATGRLSSSDPNLQNIPIRTEEGRRIRQAFIAPAGRK 692

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF  G D H  TA  ++      V T Q       
Sbjct: 693  ILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVFGAHFEEVTTEQ------- 745

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR+AK +NF + YG +  GLA+   +   EA+  +D ++     
Sbjct: 746  ----------------RRRAKAVNFGLIYGMSAFGLAKQLDIPRNEAQTYIDTYFARYPG 789

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+  
Sbjct: 790  VLQYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAADIIK 849

Query: 1049 CAMLEIS 1055
             AM+ I+
Sbjct: 850  KAMINIA 856



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 145/363 (39%), Gaps = 94/363 (25%)

Query: 321 KASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKID 380
           K S N  S+++      +++ Y  ++ +D++       W+       L+ A DTE   ++
Sbjct: 301 KTSSNAESDEVMAPVEAISAKYHTILTLDDLD-----TWIAKLSQAKLI-AIDTETTSLN 354

Query: 381 VKQETPVDHGEVICFSIYSGPEA------DFGNGKSCIWVDLLDGGGRDLLNEFAPFFED 434
                 V     I F+I +G  A      D+ +  S I  D+        L +  P  E 
Sbjct: 355 YMDAKLVG----ISFAIEAGEAAYLPLAHDYLDAPSQI--DMATA-----LEKLRPLLES 403

Query: 435 PSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGYSLEALTGDRK 492
            +  KV  N  +D  +  N G+K+ G H DTM  + +++S  SR    G +L+ L     
Sbjct: 404 DNPAKVGQNLKYDISIFANVGIKLKGVHFDTMLESYVFNSVASRHDMDGLALKYL----- 458

Query: 493 VMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREER 552
                          G+ +      IS +D+ G+   +   +   + T AP         
Sbjct: 459 ---------------GHKN------ISFEDVAGKGAKQLTFNQIDLDTAAP--------- 488

Query: 553 ELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVK 611
                Y+A D+  TL+L++ L        W +L+ +P     +   + E   P  ++L  
Sbjct: 489 -----YAAEDADITLRLHQHL--------WPRLEKEP----ELAQVFTELELPLIQVLSD 531

Query: 612 METEGMLVDREYLSE-----IEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQ 666
           +E +G+L+D   LS+      +K+ + E EA      K+           N+GS  QL+ 
Sbjct: 532 IERQGVLIDPMLLSQQSDELAQKIDKLELEAYEIAGEKF-----------NLGSPKQLQV 580

Query: 667 LLF 669
           L F
Sbjct: 581 LFF 583


>gi|424879511|ref|ZP_18303143.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WU95]
 gi|392515874|gb|EIW40606.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WU95]
          Length = 1016

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 135/254 (53%), Gaps = 30/254 (11%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 736  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 795

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 796  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 834

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 835  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 892

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 893  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LV 950

Query: 1062 ELGW----KLLLQV 1071
            E+G     ++LLQV
Sbjct: 951  EVGLADRVRMLLQV 964



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 71/255 (27%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D L       ED S+ KV  N  +D  +++ YG++   F  DTM ++ + D+     G +
Sbjct: 483 DALPRLKALLEDESVLKVAQNLKYDYLLMKRYGIETRSFD-DTMLISYVLDAG---TGAH 538

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIST 540
            ++ L+                       E F+G   I  KD+ G         +GK + 
Sbjct: 539 GMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKANV 566

Query: 541 IAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQE 600
              + ++ R        Y+A D+  TL+L+  LK +L                +   Y+ 
Sbjct: 567 TFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRLA------------AAGLTSVYER 609

Query: 601 YWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAKY 655
             +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++          
Sbjct: 610 LERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERF---------- 659

Query: 656 MNVGSDTQLRQLLFG 670
            N+GS  QL  +LFG
Sbjct: 660 -NIGSPKQLGDILFG 673


>gi|309776902|ref|ZP_07671872.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915313|gb|EFP61083.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
          Length = 861

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 142/253 (56%), Gaps = 24/253 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            K+G++H   N I T+TGRLS+  PNLQN    +++  +IR+AF+A  G+ L+ ADY Q+E
Sbjct: 584  KDGKIHTIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEIRKAFVASEGHVLLSADYSQIE 643

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+A+ + M+DAF  G D H++TAM ++    ++V+                    
Sbjct: 644  LRMLAHMADEEVMIDAFNHGIDIHTKTAMQIFDVDHDSVD-------------------- 683

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A+ RR AK +NF I YG++  GL+    +S +EA   +D ++     + ++ ++  +
Sbjct: 684  ---ANMRRSAKTVNFGIVYGQSDFGLSEQLGISRKEAHAFIDKYFASYPNIKSFMDSTIQ 740

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
                + +V TL  R R    I       R   +RAA+N P+QGSAAD+   AM+ I +  
Sbjct: 741  FCEENGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQGSAADLIKLAMIHIFERM 800

Query: 1059 RLKELGWKLLLQV 1071
            R +++  +++LQ+
Sbjct: 801  RREQVKSRMILQI 813


>gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15]
 gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15]
          Length = 967

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 137/258 (53%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + ++   GRVH S  +  T TGRLS+  PNLQN P   ++  KIR+AF+A PG+ LI AD
Sbjct: 681  AAIAPSTGRVHTSYALAATTTGRLSSSDPNLQNIPVRTEEGRKIRKAFVAAPGHVLISAD 740

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+ +   +  AF+ G D H+ TA  M+      +E         G D   
Sbjct: 741  YSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMF---DTPIE---------GMD--- 785

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             P++       RR+AK +NF I YG +  GLA    +S  EA   +  ++     +  + 
Sbjct: 786  -PMI-------RRRAKAINFGIVYGISAFGLANQLGISQGEAGAYIKTYFERFPGIQAYM 837

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            +A K   R   +V T+ GR    P I++ + + R   ERAAIN P+QG+AADV   AM+ 
Sbjct: 838  DATKAFVREHGYVTTIFGRKINIPDIEAKSAAHRQFAERAAINAPIQGAAADVMRRAMIR 897

Query: 1054 ISKNARLKELGWKLLLQV 1071
            +        L  ++LLQV
Sbjct: 898  MPVALEAAGLSTRMLLQV 915


>gi|423293907|ref|ZP_17272034.1| DNA polymerase I [Bacteroides ovatus CL03T12C18]
 gi|392677128|gb|EIY70547.1| DNA polymerase I [Bacteroides ovatus CL03T12C18]
          Length = 949

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 154/305 (50%), Gaps = 29/305 (9%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TE 833
            + T +E  E+       +  + E   +  L+  +I  L    ++ + GRVH S N   T 
Sbjct: 628  YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALP-QLINPRTGRVHTSFNQTVTA 686

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M+D
Sbjct: 687  TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF +  D H+ TA  +Y      ++                  LKD  +  RRKAK  NF
Sbjct: 747  AFLSNHDIHAATAAKVY-----KID------------------LKDVGSDMRRKAKTANF 783

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG +  GLA    V  +EAK+ +D ++     V  + +   + ++   +V T+  R 
Sbjct: 784  GIIYGISVFGLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRK 843

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + +  K++LQV  
Sbjct: 844  RFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHD 903

Query: 1074 FFSFS 1078
              +FS
Sbjct: 904  ELNFS 908



 Score = 41.2 bits (95), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 26/43 (60%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           ++NEF P FE+ +  KV  N  +D  VL+NYG  V G   DTM
Sbjct: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLFDTM 464


>gi|422466307|ref|ZP_16542883.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4]
 gi|422470233|ref|ZP_16546754.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3]
 gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3]
 gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4]
          Length = 892

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 831  AEAALTSRVLLQV 843


>gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 999

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 136/260 (52%), Gaps = 30/260 (11%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  +  RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY 
Sbjct: 713  VHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 772

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A    +  AF+ G D H+ TA  M+         G  +    GE      
Sbjct: 773  QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------ 817

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+
Sbjct: 818  --------VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMES 869

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            RK  +R   +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM+ + 
Sbjct: 870  RKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIRME 929

Query: 1056 KNARLKELGW----KLLLQV 1071
                L E+G     ++LLQV
Sbjct: 930  PA--LAEVGLGDRVRMLLQV 947



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 71/256 (27%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED ++ KV  N  +D  +++ YG++   F  DTM ++ + D+     G 
Sbjct: 465 RDALPRLKSLLEDAAVLKVAQNLKYDYLLMQRYGIETRSFD-DTMLISYVLDAG---TGA 520

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 548

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 549 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 591

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
              +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++         
Sbjct: 592 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 642

Query: 655 YMNVGSDTQLRQLLFG 670
             N+GS  QL  +LFG
Sbjct: 643 --NIGSPKQLGDILFG 656


>gi|190149819|ref|YP_001968344.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 7 str.
            AP76]
 gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
            serovar 13 str. N273]
 gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
            str. AP76]
 gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
            serovar 13 str. N273]
          Length = 957

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 155/306 (50%), Gaps = 32/306 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   ++ A +       L E   +  L S +   LPL    ++ K GRVH 
Sbjct: 633  KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INPKTGRVHT 687

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 688  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHL 747

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN + M+ AF  G D H  TA  ++    + V + Q                       R
Sbjct: 748  ANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ-----------------------R 784

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S  +AKK ++ ++     V  +    ++ +    +
Sbjct: 785  RSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGY 844

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TL GR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I K  R  E   
Sbjct: 845  VETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NI 903

Query: 1066 KLLLQV 1071
            K+++QV
Sbjct: 904  KMIMQV 909


>gi|347760865|ref|YP_004868426.1| DNA polymerase I [Gluconacetobacter xylinus NBRC 3288]
 gi|347579835|dbj|BAK84056.1| DNA polymerase I [Gluconacetobacter xylinus NBRC 3288]
          Length = 924

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/258 (36%), Positives = 137/258 (53%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + ++   GRVH S  +  T TGRLS+  PNLQN P   ++  +IR+AF+A PGN L+ AD
Sbjct: 642  NQINPATGRVHTSFQMAVTTTGRLSSNDPNLQNIPIRTEEGGRIRRAFVAAPGNVLVSAD 701

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LA +A+  ++ +AF+ G D H+RTA  ++             +   G D   
Sbjct: 702  YSQIELRLLADVADIPALREAFELGQDIHARTASEVFG------------IPLEGMD--- 746

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             PL        RR+AK +NF I YG +  GL R   +   EA+  +D ++     +  + 
Sbjct: 747  -PL-------TRRRAKAINFGIIYGISAFGLGRQLGIPPGEARGYIDAYFARYPGIRDYM 798

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K ++R   +V T  GR    P I   +  +RN+ ER AIN P+QG AAD+   AM+ 
Sbjct: 799  ERVKAQARAKGYVTTPFGRRCWVPGIGDKSAMRRNYAERQAINAPLQGGAADIIKRAMVR 858

Query: 1054 ISKNARLKELGWKLLLQV 1071
            I        L  ++LLQV
Sbjct: 859  IPTALADAGLDGRMLLQV 876


>gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700]
 gi|422337267|ref|ZP_16418238.1| DNA polymerase I [Aggregatibacter aphrophilus F0387]
 gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700]
 gi|353345481|gb|EHB89773.1| DNA polymerase I [Aggregatibacter aphrophilus F0387]
          Length = 985

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 154/294 (52%), Gaps = 32/294 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++    +E   + +    L E   +  L S +   LP     V+ + GRVH 
Sbjct: 662  KGAPSTNEEVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 715

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  +I ADY Q+ELRI+AHL
Sbjct: 716  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 775

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +N   +++AF  G D H  TA  ++                       +P L+   + +R
Sbjct: 776  SNDAGLINAFAQGKDIHRSTAAELF----------------------GLP-LEQVTSEQR 812

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+R   +S  +A++ +DL++     V T+    +++++   +
Sbjct: 813  RNAKAINFGLIYGMSSFGLSRQLGISRADAQRYMDLYFQRYPGVQTFMHDIREKAKAQGY 872

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM+++ +  R
Sbjct: 873  VETLFGRRLYLPEINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEITR 926


>gi|386071681|ref|YP_005986577.1| DNA polymerase I [Propionibacterium acnes ATCC 11828]
 gi|353456047|gb|AER06566.1| DNA polymerase I [Propionibacterium acnes ATCC 11828]
          Length = 915

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 637  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 696

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 697  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 733

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 734  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 793

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 794  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 853

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 854  AEAALTSRVLLQV 866


>gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
            4226]
 gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
            serovar 2 str. S1536]
 gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
            4226]
 gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
            serovar 2 str. S1536]
          Length = 957

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 155/306 (50%), Gaps = 32/306 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   ++ A +       L E   +  L S +   LPL    ++ K GRVH 
Sbjct: 633  KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INPKTGRVHT 687

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 688  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHL 747

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN + M+ AF  G D H  TA  ++    + V + Q                       R
Sbjct: 748  ANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ-----------------------R 784

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S  +AKK ++ ++     V  +    ++ +    +
Sbjct: 785  RSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGY 844

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TL GR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I K  R  E   
Sbjct: 845  VETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NI 903

Query: 1066 KLLLQV 1071
            K+++QV
Sbjct: 904  KMIMQV 909


>gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
 gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
          Length = 910

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 632  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 691

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 692  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 728

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 729  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 788

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 789  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 848

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 849  AEAALTSRVLLQV 861


>gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
 gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
          Length = 929

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/246 (38%), Positives = 133/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    ++  +GRVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA PG  
Sbjct: 644  LPLM---INPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPPGYR 700

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF +  D H  TA  ++         G  L +  G
Sbjct: 701  IVAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVF---------GVSLDKVSG 751

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 752  E--------------QRRSAKAINFGLIYGMSSFGLSRQLNIGAGEAKKYMDLYFERYPG 797

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E+ ++ +    +V TL GR    P I +    +R   ERAAIN P+QG+AAD+  
Sbjct: 798  VLQYMESTRELAAEKGYVSTLDGRRLYLPDINASNAIRRKAAERAAINAPMQGTAADIIK 857

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 858  RAMIAV 863


>gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
 gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
          Length = 913

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/277 (34%), Positives = 139/277 (50%), Gaps = 24/277 (8%)

Query: 816  NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
             ++ + GR+H S +     TGRLS+  PNLQN P    +  +IRQAF+A  G  L+ ADY
Sbjct: 632  QINPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADY 691

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRI+AHLA    +LDAF+ G D H  TA  ++                       V
Sbjct: 692  SQIELRIMAHLAKDDGLLDAFRHGLDVHRATAAEVFG----------------------V 729

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PL +D    +RR AK +NF + YG +  GLA+   V  +EA+  +D ++     VL + E
Sbjct: 730  PL-EDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEAQAYIDRYFARYPGVLAYME 788

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              + ++     V TL GR    P I S   + R   ER AIN P+QG+AAD+   AM+ +
Sbjct: 789  RTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAINAPMQGTAADIMKRAMVAV 848

Query: 1055 SKNARLKELGWKLLLQVLFFFSFSFFSIIVIVSCQGI 1091
                +   L  +++LQV           +V   C+GI
Sbjct: 849  DNWLQESGLDARVILQVHDELVLEVREELVEQVCEGI 885


>gi|373121807|ref|ZP_09535674.1| DNA polymerase I [Erysipelotrichaceae bacterium 21_3]
 gi|422330008|ref|ZP_16411032.1| DNA polymerase I [Erysipelotrichaceae bacterium 6_1_45]
 gi|371655099|gb|EHO20455.1| DNA polymerase I [Erysipelotrichaceae bacterium 6_1_45]
 gi|371664786|gb|EHO29955.1| DNA polymerase I [Erysipelotrichaceae bacterium 21_3]
          Length = 861

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 139/253 (54%), Gaps = 24/253 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            K+G++H   N I T+TGRLS+  PNLQN    +++  +IR+AF+A  G+ L+ ADY Q+E
Sbjct: 584  KDGKIHTIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEIRKAFVASEGHVLLSADYSQIE 643

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+AN + M+DAF  G D H++TAM ++    +AV+                    
Sbjct: 644  LRMLAHMANEEVMIDAFNHGIDIHTKTAMQIFDVEHDAVD-------------------- 683

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A+ RR AK +NF I YG++  GL+    ++ +EA   +D ++     + ++ +    
Sbjct: 684  ---ANMRRSAKTVNFGIVYGQSDFGLSEQLGITRKEAHAFIDKYFASYPNIKSFMDTTIA 740

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
                  +V TL  R R    I       R   +RAA+N P+QGSAAD+   AM+ I K  
Sbjct: 741  FCEEHGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQGSAADLIKLAMIHIYKKM 800

Query: 1059 RLKELGWKLLLQV 1071
            + +++  +++LQ+
Sbjct: 801  QEEQVKSRMILQI 813


>gi|422390901|ref|ZP_16470996.1| DNA polymerase I [Propionibacterium acnes HL103PA1]
 gi|422464644|ref|ZP_16541251.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1]
 gi|422564994|ref|ZP_16640645.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2]
 gi|422576185|ref|ZP_16651723.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1]
 gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1]
 gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2]
 gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1]
 gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1]
          Length = 892

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 831  AEAALTSRVLLQV 843


>gi|404475889|ref|YP_006707320.1| DNA polymerase I [Brachyspira pilosicoli B2904]
 gi|404437378|gb|AFR70572.1| DNA polymerase I [Brachyspira pilosicoli B2904]
          Length = 925

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/271 (36%), Positives = 141/271 (52%), Gaps = 25/271 (9%)

Query: 803  SLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAF 861
            S + N  L +  + V  K  R+H S N   T TGRLS+  PNLQN PA   +   IR  F
Sbjct: 630  SKLKNTYLDVFPTLVHKKTNRIHASFNQTVTATGRLSSSEPNLQNIPARGDEGKDIRNTF 689

Query: 862  IAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
            IA  GN LI ADY Q+ELR+LAH +N   +++AFK   D H +TAM +Y   +  V    
Sbjct: 690  IAEKGNVLIAADYSQIELRLLAHFSNDPVLVEAFKNNDDIHRKTAMKIYSVSKEHV---- 745

Query: 922  VLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDL 981
                       P         S R  AK++NFSI YGKT  GL+++  +S +EA   +  
Sbjct: 746  ----------TP---------SMRNTAKIINFSIIYGKTAFGLSKELNISRKEADDFIKG 786

Query: 982  WYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP-AIKSLTRSQRNHIERAAINTPVQ 1040
            +++   +V  + E   ++ +   +V T+LGR R     I S     RN  ER A+NT +Q
Sbjct: 787  YFSTYSQVKPFCEKVIEDVKSKGYVRTMLGRIRDLSKTINSSNAVVRNEAERMALNTLIQ 846

Query: 1041 GSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            GSAAD+   AM+ I K  +      K+++QV
Sbjct: 847  GSAADMIKVAMIAIHKEFKNHFKTAKIVMQV 877


>gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 976

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 132/253 (52%), Gaps = 26/253 (10%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH S + +   TGRLS+  PN+QN P    +  +IR AFIA  G  LI  DY Q+EL
Sbjct: 696  TGRVHTSFSMVGASTGRLSSSDPNVQNIPIRTSEGRQIRTAFIAAEGCKLISVDYSQIEL 755

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R++AH+A  +SM++AFK G D H+RTA  ++                       +PL  D
Sbjct: 756  RLVAHVAGEQSMIEAFKDGIDIHARTASEVF----------------------GIPL--D 791

Query: 940  AFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               SE RR+AK +NF I YG +  GLAR   +   EA+  +  ++     +  + E  K 
Sbjct: 792  QMDSETRRRAKAINFGIIYGISAFGLARQLSIPQGEARDYIASYFENFPGIRAYMERIKT 851

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            E+R D  V TL GR      +   + + R   ER AIN P+QGSAAD+   AM+ I    
Sbjct: 852  EAREDGFVETLFGRRIHITGMAGGSAAHRGFAERQAINAPIQGSAADIIKRAMIRIPPAL 911

Query: 1059 RLKELGWKLLLQV 1071
            +  ++   +LLQV
Sbjct: 912  QAADIRADMLLQV 924


>gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter daltonii FRC-32]
 gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter daltonii FRC-32]
          Length = 891

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 137/256 (53%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  ++GR+H S N   T TGRLS+  PNLQN P   ++   IR AFIA  G  ++ ADY 
Sbjct: 611  VYSESGRIHTSYNQAVTNTGRLSSSEPNLQNIPIRSEEGRSIRHAFIAEEGCLILSADYS 670

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAHL+  +   DAF    D H+RTA  ++      +  G V  E          
Sbjct: 671  QIELRVLAHLSQDRVFCDAFAKDEDIHTRTAAEVF-----GLFPGMVTPEM--------- 716

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF + YG+ P  LA++  VS + AK+ +D +++       + + 
Sbjct: 717  ---------RRQAKTINFGVIYGQGPFSLAKELGVSTKVAKEFIDNYFDRHAGARVFLDG 767

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+    HV T+LGR    P I S   + R+  +R AIN P+QGSAAD+   AM+ +S
Sbjct: 768  CVREAEAKGHVTTILGRRLPIPDINSTNGNIRSFAQRNAINYPIQGSAADIIKQAMVRVS 827

Query: 1056 KNARLKELGWKLLLQV 1071
               R + L  +L++QV
Sbjct: 828  GRMRREGLKSRLIMQV 843



 Score = 46.6 bits (109), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L    P   DP+IKK+  N  +D  VL   G+++ G   DTM  + L + +R + G  +
Sbjct: 364 VLQALRPLLLDPAIKKIGQNIKYDYQVLRRAGIEMEGIWCDTMLASYLLNPNRSSHGLNA 423

Query: 484 LEALTGDRKVMS 495
           L     D K++S
Sbjct: 424 LAVELLDHKMIS 435


>gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae]
          Length = 936

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 128/241 (53%), Gaps = 24/241 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +  K  RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  ++ ADY 
Sbjct: 656  IHPKTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEEGRRIRQAFIAREGYKIVAADYS 715

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +LDAF  G D H  TA  ++                         
Sbjct: 716  QIELRIMAHLSQDKGLLDAFAEGQDIHRATAAEVFG-----------------------V 752

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            LL D    +RR AK +NF + YG +  GL+R   ++  +A+  +D ++     VL++ E 
Sbjct: 753  LLTDVTNEQRRSAKAINFGLIYGMSAFGLSRQLGITRGQAQHYMDRYFERYPGVLSYMER 812

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +K++    +V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM+ + 
Sbjct: 813  TRKQAAEQGYVETLAGRRLYLPDINSRNAMRRKASEREAINAPMQGTAADIIKKAMIALD 872

Query: 1056 K 1056
            K
Sbjct: 873  K 873


>gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
          Length = 832

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 152/293 (51%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL    +  + GR+H   N   T TGRL 
Sbjct: 517  AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPRTGRLHTRFNQTATATGRLC 575

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
               PNLQN P       +IR+ FIA  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 576  CCDPNLQNIPVRTPLGQRIRRGFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEG 635

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H+ TA  M+   R AV+                PL+       RR AK +NF + YG
Sbjct: 636  RDIHTETASWMFGVPREAVD----------------PLM-------RRAAKTINFGVLYG 672

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA+  ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 673  MSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPD 732

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +++  +S R   ER A N PVQG+AAD+   AM+++    RL+E+G ++LLQV
Sbjct: 733  LEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLEEMGARMLLQV 783


>gi|417843781|ref|ZP_12489847.1| DNA polymerase I [Haemophilus haemolyticus M21127]
 gi|341948529|gb|EGT75155.1| DNA polymerase I [Haemophilus haemolyticus M21127]
          Length = 935

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 154/294 (52%), Gaps = 32/294 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++    +E   + +    L E   +  L S +   LP     V+ + GRVH 
Sbjct: 612  KGAPSTNEEVL---EELAYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 665

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G S++ ADY Q+ELRI+AHL
Sbjct: 666  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  +S+++AF  G D H  TA  ++         G  L E   E              +R
Sbjct: 726  SGDQSLINAFSQGKDIHRSTAAEIF---------GVSLDEVTNE--------------QR 762

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+R   +S  +A+K +DL++     V  +    +++++   +
Sbjct: 763  RNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYMDLYFQRYPGVQQFMTDIREKAKAQGY 822

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM++I +  R
Sbjct: 823  VETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKIDEVIR 876


>gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703]
          Length = 612

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 131/246 (53%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 327  LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYR 383

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF AG D H  TA  ++      V   Q       
Sbjct: 384  IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQ------- 436

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 437  ----------------RRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPG 480

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 481  VLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIK 540

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 541  RAMIAV 546


>gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541]
 gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541]
          Length = 934

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 156/305 (51%), Gaps = 32/305 (10%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCS 827
            GA ++N ++    +E     +    L E  S+  L S +   LPL    ++ K GRVH S
Sbjct: 611  GAASTNEEVL---EELALNHELPKLLLEHRSLAKLKSTYTDKLPLM---INPKTGRVHTS 664

Query: 828  LN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLA 886
             +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL+
Sbjct: 665  YHQAVTATGRLSSRDPNLQNIPVRTEEGRRIRQAFIARKGYKVMAADYSQIELRIMAHLS 724

Query: 887  NCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERR 946
              K +L AF  G D H  TA  ++                       VP L    + +RR
Sbjct: 725  QDKGLLTAFAEGKDIHKATAAEVF----------------------GVP-LDQVTSDQRR 761

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
             AK +NF + YG +  GLAR   +   EA++ +DL++     VL + E  + ++    +V
Sbjct: 762  SAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLRYMENTRLQASEQGYV 821

Query: 1007 HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK 1066
             TL GR      IKS    +R   ER AIN P+QG+AAD+   AM+ +    + ++    
Sbjct: 822  ETLEGRRLYLADIKSSNGMRRKAAEREAINAPMQGTAADIIKKAMIAVDHWLQTEKPEAD 881

Query: 1067 LLLQV 1071
            +L+QV
Sbjct: 882  MLMQV 886



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 129/303 (42%), Gaps = 66/303 (21%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR----DLLN 426
           A DTE   +D ++   V     + F+I +G  A    G      D LD   +    D++ 
Sbjct: 357 AFDTETDSLDTQEARLVG----MSFAIEAGHAAYLPIGH-----DYLDAPVQLSLDDVIA 407

Query: 427 EFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEA 486
              P  E+  I K+  N  +D  VLENYG+++ G   DTM  + + +S     G + +++
Sbjct: 408 VMKPILENEKIGKIGQNLKYDAEVLENYGIELKGIAFDTMLESYVLNSVAGM-GRHDMDS 466

Query: 487 LTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546
           L  DR +  +                     +S ++I G  K KK  +  +I    P+E+
Sbjct: 467 L-ADRHLNHK--------------------TVSFEEIAG--KGKKQLTFNQI----PLEQ 499

Query: 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606
                     +Y+A D+  TL L+++L  +L E       +P     +   +Q    P  
Sbjct: 500 --------AANYAAEDADVTLLLHQALFPQLEE-------EP----KLAHVFQNIEMPLV 540

Query: 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQ 666
            +LV+ME +G+L+D   L+   K+  A     +    K A +     +  N+ S  QL+ 
Sbjct: 541 PVLVRMERKGVLIDAPTLAAQSKIITAR----LAELEKQAFELA--GEEFNLASPKQLQT 594

Query: 667 LLF 669
           +LF
Sbjct: 595 ILF 597


>gi|345017321|ref|YP_004819674.1| 5'-3' exonuclease [Thermoanaerobacter wiegelii Rt8.B1]
 gi|344032664|gb|AEM78390.1| LOW QUALITY PROTEIN: 5'-3' exonuclease, resolvase-like
            domain-containing protein [Thermoanaerobacter wiegelii
            Rt8.B1]
          Length = 872

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 162/302 (53%), Gaps = 37/302 (12%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSL-NI 830
            ++T+ E  E      D +S + E   +  L S +I   LPL       +N RVH +   +
Sbjct: 551  YSTDSEVLEQLVPYNDVVSDIIEYRQLTKLKSTYIDGFLPLMD-----ENNRVHSNFKQM 605

Query: 831  NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCK 889
             T TGR+S+  PNLQN P  E+   +IR+AFI    +  IV ADY Q+ELR+LAH++  +
Sbjct: 606  VTATGRISSTEPNLQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDE 665

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
             ++++F    D H RTA  ++                       VP+ K      RR AK
Sbjct: 666  KLIESFMNNEDIHLRTAAEVFK----------------------VPMEK-VTPEMRRAAK 702

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
             +NF I YG +  GL+RD K+S +EAK+ ++ ++   + V  + E   + ++ + +V T+
Sbjct: 703  AVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTI 762

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            + R R  P I S   +QR+  ER A+N P+QGSAAD+   AM+++ ++ +  +L  +L+L
Sbjct: 763  MNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLIL 822

Query: 1070 QV 1071
            QV
Sbjct: 823  QV 824


>gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
 gi|188023732|gb|EDU61772.1| DNA-directed DNA polymerase [Providencia stuartii ATCC 25827]
          Length = 930

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/280 (36%), Positives = 146/280 (52%), Gaps = 29/280 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            L E  S+  L S +   LPL    +S K  RVH S +   T TGRLS+R PNLQN P   
Sbjct: 629  LLEHRSLAKLKSTYTDKLPLM---ISTKTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRT 685

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
            ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL+  K +L AF  G D H  TA  ++ 
Sbjct: 686  EEGRRIRQAFIARKGYKVVAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVF- 744

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
                                  VP L +  + +RR AK +NF + YG +  GLAR   + 
Sbjct: 745  ---------------------GVP-LDEVTSDQRRSAKAINFGLIYGMSAFGLARQLGIP 782

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
              EA++ +DL++     VL + E  + ++    +V TL GR      IKS    +R   E
Sbjct: 783  RGEAQRYMDLYFERYPGVLRYMENTRHQAAEQGYVETLEGRRLYLADIKSSNGMRRKAAE 842

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R AIN P+QG+AAD+   AM+ +    + ++    +L+QV
Sbjct: 843  REAINAPMQGTAADIIKKAMIAVDAWLQTEKPHADMLMQV 882


>gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1]
 gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1]
          Length = 932

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/257 (36%), Positives = 141/257 (54%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++  DY 
Sbjct: 651  INPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPHGWKILAVDYS 710

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K++LDAFK G D H+ TA  +       V+  QV  E          
Sbjct: 711  QIELRIMAHLSGDKALLDAFKNGKDIHAATAAEII-----GVDIDQVTSE---------- 755

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                    +RR+AK +NF + YG +  GL++   +   EA++ +D ++     V+ + E 
Sbjct: 756  --------QRRRAKAINFGLIYGMSAFGLSKQLGIPRGEAQQYMDTYFERYPGVMQYMED 807

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  +    +V T+ GR    P IKS    +R   ERAAIN P+QG+AAD+   AML + 
Sbjct: 808  TRSLAAEKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVD 867

Query: 1056 KNARLKELG-WKLLLQV 1071
            +  + +  G  KLL+QV
Sbjct: 868  EWVQAEGEGKVKLLMQV 884


>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
 gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
          Length = 922

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/247 (37%), Positives = 129/247 (52%), Gaps = 27/247 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 637  LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRK 693

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++    ++V + Q       
Sbjct: 694  ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDSVTSEQ------- 746

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR+AK +NF + YG +  GLAR   +   EA+  +D ++     
Sbjct: 747  ----------------RRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYIDTYFARYPG 790

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+  
Sbjct: 791  VLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAADIIK 850

Query: 1049 CAMLEIS 1055
             AM+ I+
Sbjct: 851  KAMISIA 857



 Score = 45.4 bits (106), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
           L +  P  ED  IKKV  N  +D  VL N G+K+ G   DTM  + +++S  SR    G 
Sbjct: 395 LEKLRPLLEDAKIKKVGQNLKYDISVLANAGIKLQGVVFDTMLESYVFNSIASRHDMDGL 454

Query: 483 SLEALTGDRKVMSED 497
           +L+ L G + +  ED
Sbjct: 455 ALKYL-GHKNIAFED 468


>gi|422572448|ref|ZP_16648018.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1]
 gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1]
          Length = 892

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/255 (36%), Positives = 147/255 (57%), Gaps = 29/255 (11%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTIAATGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFRSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMAGYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AM  ++ + 
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAM--VATDQ 828

Query: 1059 RLKELGW--KLLLQV 1071
            +L E G   ++LLQV
Sbjct: 829  KLAEAGLTSRVLLQV 843


>gi|257865986|ref|ZP_05645639.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257872319|ref|ZP_05651972.1| DNA polymerase I [Enterococcus casseliflavus EC10]
 gi|257799920|gb|EEV28972.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257806483|gb|EEV35305.1| DNA polymerase I [Enterococcus casseliflavus EC10]
          Length = 881

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 158/294 (53%), Gaps = 32/294 (10%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLKEQAPIVEDILTYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P   ++  KIR+AF+    + +I + DY Q+ELR+LAH+++   + +AF  
Sbjct: 622  SVDPNLQNIPIRLEEGRKIREAFVPREADWVIYSSDYSQIELRVLAHISDDTHLKEAFIE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHSSTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  ++ + A++ +D ++ +   V T+ E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             I S   + R   ER AINTP+QGSAAD+   AM++++K  + ++L   +LLQV
Sbjct: 780  DINSRNFNIRTFAERTAINTPIQGSAADILKIAMIDLAKRLKEEKLAATMLLQV 833


>gi|392940657|ref|ZP_10306301.1| LOW QUALITY PROTEIN: DNA polymerase I [Thermoanaerobacter
            siderophilus SR4]
 gi|392292407|gb|EIW00851.1| LOW QUALITY PROTEIN: DNA polymerase I [Thermoanaerobacter
            siderophilus SR4]
          Length = 872

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 162/302 (53%), Gaps = 37/302 (12%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSL-NI 830
            ++T+ E  E      D +S + E   +  L S +I   LPL       +N RVH +   +
Sbjct: 551  YSTDSEVLEQLVPYNDVVSDIIEYRQLTKLKSTYIDGFLPLMD-----ENNRVHSNFKQM 605

Query: 831  NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCK 889
             T TGR+S+  PNLQN P  E+   +IR+AFI    +  IV ADY Q+ELR+LAH++  +
Sbjct: 606  VTATGRISSTEPNLQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDE 665

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
             ++++F    D H RTA  ++                       VP+ K      RR AK
Sbjct: 666  KLIESFMNNEDIHLRTAAEVFK----------------------VPMEK-VTPEMRRAAK 702

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
             +NF I YG +  GL+RD K+S +EAK+ ++ ++   + V  + E   + ++ + +V T+
Sbjct: 703  AVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTI 762

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            + R R  P I S   +QR+  ER A+N P+QGSAAD+   AM+++ ++ +  +L  +L+L
Sbjct: 763  MNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLIL 822

Query: 1070 QV 1071
            QV
Sbjct: 823  QV 824


>gi|418962821|ref|ZP_13514671.1| DNA-directed DNA polymerase [Streptococcus anginosus subsp. whileyi
            CCUG 39159]
 gi|383345024|gb|EID23169.1| DNA-directed DNA polymerase [Streptococcus anginosus subsp. whileyi
            CCUG 39159]
          Length = 881

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 562  AADVLERLSPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + +++AF+
Sbjct: 622  SVDPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDEYLIEAFR 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRRDI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +    +    ++LLQV
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALTDRNFKTRMLLQV 833


>gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
 gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
          Length = 872

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 162/302 (53%), Gaps = 37/302 (12%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSL-NI 830
            ++T+ E  E      D +S + E   +  L S +I   LPL       +N RVH +   +
Sbjct: 551  YSTDSEVLEQLVPYNDVVSDIIEYRQLTKLKSTYIDGFLPLMD-----ENNRVHSNFKQM 605

Query: 831  NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCK 889
             T TGR+S+  PNLQN P  E+   +IR+AFI    +  IV ADY Q+ELR+LAH++  +
Sbjct: 606  VTATGRISSTEPNLQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDE 665

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
             ++++F    D H RTA  ++                       VP+ K      RR AK
Sbjct: 666  KLIESFMNNEDIHLRTAAEVFK----------------------VPMEK-VTPEMRRAAK 702

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
             +NF I YG +  GL+RD K+S +EAK+ ++ ++   + V  + E   + ++ + +V T+
Sbjct: 703  AVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTI 762

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            + R R  P I S   +QR+  ER A+N P+QGSAAD+   AM+++ ++ +  +L  +L+L
Sbjct: 763  MNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLIL 822

Query: 1070 QV 1071
            QV
Sbjct: 823  QV 824


>gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104]
 gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104]
          Length = 913

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 138/258 (53%), Gaps = 25/258 (9%)

Query: 816  NVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVAD 873
            N    +GR+H + N     TGRLS+  PNLQN P   +   +IR AF+   G + L+ AD
Sbjct: 630  NSVASDGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYAELMTAD 689

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+E+RI+AHL+    +++AF  G D HS  A   +         G  + E  GE    
Sbjct: 690  YSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAF---------GVPIEEVTGE---- 736

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+ K +++ +AYG +  GL++  K+S EEAK+ +D ++     V  + 
Sbjct: 737  ----------LRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMDAYFARFGGVRDYL 786

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
             A  +++R D +  T+LGR R  P + S  R  R   ERAA+N P+QGSAAD+   AM+E
Sbjct: 787  HAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIE 846

Query: 1054 ISKNARLKELGWKLLLQV 1071
            + K  +   L  ++LLQV
Sbjct: 847  VDKAIKEAGLQSRILLQV 864


>gi|452749422|ref|ZP_21949184.1| DNA polymerase I [Pseudomonas stutzeri NF13]
 gi|452006648|gb|EMD98918.1| DNA polymerase I [Pseudomonas stutzeri NF13]
          Length = 914

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 134/257 (52%), Gaps = 24/257 (9%)

Query: 816  NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
             ++ + GR+H S +   T TGRLS+  PNLQN P    +  +IRQAFIA PG  L+ ADY
Sbjct: 633  QINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAAPGYKLLAADY 692

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRI+AHLA    +L AF+   D H  TA  ++                       V
Sbjct: 693  SQIELRIMAHLAQDTGLLHAFQNDLDVHRATAAEVFG----------------------V 730

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PL     A +RR AK +NF + YG +  GLA+   V  +EA++ +D ++     VL + E
Sbjct: 731  PL-DQVTADQRRSAKAINFGLIYGMSAFGLAKQIDVGRKEAQEYIDRYFARYPGVLAYME 789

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              + ++    +V TL GR    P I S   + R   ER AIN P+QG+AAD+   AM+ +
Sbjct: 790  RTRTQAAEQGYVETLFGRRLYLPEINSKNGAMRKGAERTAINAPMQGTAADIIKRAMIAV 849

Query: 1055 SKNARLKELGWKLLLQV 1071
                +   L  +++LQV
Sbjct: 850  DGWLQDSALDARVILQV 866


>gi|24376141|ref|NP_720184.1| DNA polymerase I PolA [Shewanella oneidensis MR-1]
 gi|24351181|gb|AAN57628.1| DNA polymerase I PolA [Shewanella oneidensis MR-1]
          Length = 922

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/247 (37%), Positives = 129/247 (52%), Gaps = 27/247 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P    +  +IRQAFIA  G  
Sbjct: 637  LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTVEGRRIRQAFIAPEGRK 693

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L+AF  G D H  TA  ++    ++V + Q       
Sbjct: 694  ILAADYSQIELRIMAHLSQDAGLLNAFAEGKDIHRATAAEVFGTDFDSVTSEQ------- 746

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR+AK +NF + YG +  GLAR   +   EA+  +D ++     
Sbjct: 747  ----------------RRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYIDTYFARYPG 790

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+  
Sbjct: 791  VLRYMEETRASAADLGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAADIIK 850

Query: 1049 CAMLEIS 1055
             AM+ I+
Sbjct: 851  KAMISIA 857



 Score = 42.7 bits (99), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 96/248 (38%), Gaps = 61/248 (24%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
           L +  P  ED  +KKV  N  +D  VL N G+ + G   DTM  + +++S  SR    G 
Sbjct: 395 LEKLRPILEDAKLKKVGQNLKYDISVLANAGITLQGVAFDTMLESYVFNSVASRHDMDGL 454

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
           +L+ L G + +  ED                  GK + +  F +  L+         T A
Sbjct: 455 ALKYL-GHKNIAFED----------------IAGKGAKQLTFNQISLE---------TAA 488

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
           P              Y+A D+  TL+L++ L        W    K     S+F    +  
Sbjct: 489 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELASVF---TDIE 523

Query: 603 QPFGEILVKMETEGMLVDREYLS-EIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            P   IL  +E +G+ +D   L  + E++AR   E     +     K        N+ S 
Sbjct: 524 LPLIHILSDIERQGVFIDSMLLGQQSEELARKIDELETKAYDIAGEK-------FNLSSP 576

Query: 662 TQLRQLLF 669
            QL+ L F
Sbjct: 577 KQLQVLFF 584


>gi|417917036|ref|ZP_12560599.1| DNA-directed DNA polymerase [Streptococcus parasanguinis SK236]
 gi|342831200|gb|EGU65522.1| DNA-directed DNA polymerase [Streptococcus parasanguinis SK236]
          Length = 881

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 155/283 (54%), Gaps = 28/283 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  + S +++ LQ   +  ++G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 576  VSKILEYRQIAKIQSTYVIGLQDWIL--EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 633

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAFK G D H+ TAM 
Sbjct: 634  LEQGRL-IRKAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMR 692

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                   +KP     +D   ++RR AK +NF + YG +  GL+ + 
Sbjct: 693  VF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVVYGISDFGLSNNL 730

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  P I S   + R 
Sbjct: 731  GISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREIPDINSRNFNVRG 790

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + +         K+LLQV
Sbjct: 791  FAERTAINSPIQGSAADILKIAMIHLDQALERGAYKTKMLLQV 833


>gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
 gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
          Length = 899

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 136/256 (53%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  ++GR+H + +     TGRLS+  PNLQN P   +   +IR AF+A PG  L+ ADY 
Sbjct: 619  VDPRDGRIHTTFHQAGAATGRLSSSDPNLQNIPVRTELSRRIRAAFVAPPGWRLLSADYS 678

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH ++  ++L+AF+   D H+RTA   +      V TG+V  +          
Sbjct: 679  QIELRILAHYSDDPALLEAFRLREDVHTRTAAETF-----GVATGEVTSDM--------- 724

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR AK+LNF IAYG +  GL++   +   EA+  +D ++     V  + E 
Sbjct: 725  ---------RRIAKVLNFGIAYGLSAFGLSQRLDLPGAEAQGIIDRYFARYAGVRRYVEK 775

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +++R      TL GRAR  P I +   + RN  ER AINTP+QG+AAD+   AM+ + 
Sbjct: 776  AVEDARATGESRTLFGRARAMPEIAARNPALRNAAERTAINTPIQGTAADIVKVAMIRVH 835

Query: 1056 KNARLKELGWKLLLQV 1071
                      +LLLQV
Sbjct: 836  DALAGDARRARLLLQV 851


>gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease/3'->5'
            polymerase/3'->5' exonuclease [Pseudoalteromonas
            haloplanktis TAC125]
 gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
            3'->5' polymerase; 3'->5' exonuclease (C-terminal)
            [Pseudoalteromonas haloplanktis TAC125]
          Length = 911

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/246 (38%), Positives = 133/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  
Sbjct: 626  LPLM---VNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYK 682

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF  G D HS TA  ++      V           
Sbjct: 683  IVAADYSQIELRIMAHLSQDKGLLSAFANGLDVHSATAAEVF-----GVS---------- 727

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                    L++  +  RRKAK +NF + YG +  GLAR   V   EA+  +D ++     
Sbjct: 728  --------LEEVTSDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPG 779

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++    +V T+ GR    P IK+   ++R   ERAAIN P+QG+AAD+  
Sbjct: 780  VLEYMETTREKAAESGYVETIFGRRLYLPEIKAQNGARRKGAERAAINAPMQGTAADIIK 839

Query: 1049 CAMLEI 1054
             AML +
Sbjct: 840  KAMLSV 845


>gi|422527006|ref|ZP_16602996.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1]
 gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1]
          Length = 892

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 831  AEAALTSRVLLQV 843


>gi|418464049|ref|ZP_13034991.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans RhAA1]
 gi|359757390|gb|EHK91544.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans RhAA1]
          Length = 932

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 155/294 (52%), Gaps = 32/294 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++    +E   + +    L E   +  L S +   LP     V+ + GRVH 
Sbjct: 609  KGAPSTNEEVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 662

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  +I ADY Q+ELRI+AHL
Sbjct: 663  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 722

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +N + +++AF  G D H  TA  ++                       +P L+   + +R
Sbjct: 723  SNDQGLINAFAQGKDIHRSTAAEIF----------------------GLP-LEQVTSEQR 759

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+R   +S  +A++ +DL++     V T+    +++++   +
Sbjct: 760  RNAKAINFGLIYGMSSFGLSRQLGISRADAQRYMDLYFQRYPSVQTFIHDIREKAKAQGY 819

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM+++ +  R
Sbjct: 820  VETLFGRRLYLPEINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKLDELTR 873


>gi|374298760|ref|YP_005050399.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
 gi|332551696|gb|EGJ48740.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
          Length = 882

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 161/303 (53%), Gaps = 29/303 (9%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
            GA ++ N +    ++ R     ++ + E   ++ L S ++ PL    ++ + GR+H + N
Sbjct: 560  GAQSTANPVL---EKLRNEHPVVADILEFRMLEKLRSTYLEPL--PKLADEQGRIHTTFN 614

Query: 830  -INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
             + T TGRLS+  PNLQN P       ++R  F A PG  L  ADY Q+ELR+LAH++  
Sbjct: 615  QLATATGRLSSSAPNLQNIPIRGPQGTRMRACFTAGPGCLLAAADYSQIELRVLAHMSQD 674

Query: 889  KSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKA 948
             ++L+AF+ G D H+RTA  ++       + GQV                     ERR A
Sbjct: 675  PTLLEAFRHGQDIHARTAGLIFDK-----DAGQVA------------------PDERRSA 711

Query: 949  KMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHT 1008
            K +NF + YG  P  LA +  +++ +AK+ ++ ++    ++  + ++  KE+  +  V T
Sbjct: 712  KTINFGLLYGMGPQKLAAELGIALAQAKEFIERYFVGLSKLKEFYDSIVKEAEQNGSVVT 771

Query: 1009 LLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLL 1068
            +LGR R  P I S   + +    R AINT +QGSAAD+   AM+    + +++ LG +L+
Sbjct: 772  MLGRRRLLPDIHSRNDNLKAQAVRQAINTRIQGSAADIIKLAMIRAHADEKIRALGGRLI 831

Query: 1069 LQV 1071
            LQV
Sbjct: 832  LQV 834


>gi|427408412|ref|ZP_18898614.1| DNA polymerase I [Sphingobium yanoikuyae ATCC 51230]
 gi|425712722|gb|EKU75736.1| DNA polymerase I [Sphingobium yanoikuyae ATCC 51230]
          Length = 932

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 164/329 (49%), Gaps = 40/329 (12%)

Query: 793  SALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQ 847
            SA+C +      +  L S +   LQ   ++   GRVH S ++   +TGRLS+  PNLQN 
Sbjct: 624  SAICGLVLEWRQLSKLKSTYTDALQ-QQINRDTGRVHTSYSLTGAQTGRLSSTDPNLQNI 682

Query: 848  PALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
            P   +   +IR AF+A PGN ++ ADY Q+ELR+ AH+A+  ++ DAF+ G D H+RTAM
Sbjct: 683  PIRTEIGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKDAFEQGEDIHNRTAM 742

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++  +                               R +AK +NF+I YG +  GLA  
Sbjct: 743  ELFGEVNR---------------------------DTRGRAKTINFAILYGISRWGLAGR 775

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
             ++S EEA+  +  +Y     +  +     +++R +    TL GR   FP IK+  + +R
Sbjct: 776  LEISAEEAQDMISRYYERFPGISVYINETLEKARANGFTETLFGRKTWFPRIKAPVQHER 835

Query: 1028 NHIERAAINTPVQGSAADV---AMCAMLEISKNARLKELGWKLLLQVLFFFSFSFFSIIV 1084
               ERAAIN P+QG++AD+   AM  M    + A L  +  ++LLQV     F      V
Sbjct: 836  QGAERAAINAPIQGTSADIIKRAMARMGPALEAAGLPRV--RMLLQVHDELVFELPEADV 893

Query: 1085 IVSCQGI--VLANAMHPMFGKSSRLHYDV 1111
              + + I  V+ +A  PM   S  L  ++
Sbjct: 894  EAASKVIRQVMESAAEPMVSLSVPLGVEI 922


>gi|407692488|ref|YP_006817277.1| DNA polymerase I [Actinobacillus suis H91-0380]
 gi|407388545|gb|AFU19038.1| DNA polymerase I [Actinobacillus suis H91-0380]
          Length = 957

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 155/306 (50%), Gaps = 32/306 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   ++ A +       L E   +  L S +   LPL    ++ K GRVH 
Sbjct: 633  KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INPKTGRVHT 687

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 688  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHL 747

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN + M+ AF  G D H  TA  ++    + V + Q                       R
Sbjct: 748  ANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ-----------------------R 784

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S  +AKK ++ ++     V  +    ++ +    +
Sbjct: 785  RSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGY 844

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TL GR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I K  R  E   
Sbjct: 845  VETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKVIRGDE-NI 903

Query: 1066 KLLLQV 1071
            K+++QV
Sbjct: 904  KMIMQV 909


>gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1]
          Length = 833

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 162/302 (53%), Gaps = 37/302 (12%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSL-NI 830
            ++T+ E  E      D +S + E   +  L S +I   LPL       +N RVH +   +
Sbjct: 512  YSTDSEVLEQLVPYNDVVSDIIEYRQLTKLKSTYIDGFLPLMD-----ENNRVHSNFKQM 566

Query: 831  NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCK 889
             T TGR+S+  PNLQN P  E+   +IR+AFI    +  IV ADY Q+ELR+LAH++  +
Sbjct: 567  VTATGRISSTEPNLQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDE 626

Query: 890  SMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAK 949
             ++++F    D H RTA  ++                       VP+ K      RR AK
Sbjct: 627  KLIESFMNNEDIHLRTAAEVFK----------------------VPMEK-VTPEMRRAAK 663

Query: 950  MLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTL 1009
             +NF I YG +  GL+RD K+S +EAK+ ++ ++   + V  + E   + ++ + +V T+
Sbjct: 664  AVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTI 723

Query: 1010 LGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLL 1069
            + R R  P I S   +QR+  ER A+N P+QGSAAD+   AM+++ ++ +  +L  +L+L
Sbjct: 724  MNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLIL 783

Query: 1070 QV 1071
            QV
Sbjct: 784  QV 785


>gi|422385157|ref|ZP_16465292.1| DNA polymerase I [Propionibacterium acnes HL096PA3]
 gi|422388227|ref|ZP_16468330.1| DNA polymerase I [Propionibacterium acnes HL096PA2]
 gi|422393357|ref|ZP_16473410.1| DNA polymerase I [Propionibacterium acnes HL099PA1]
 gi|422424225|ref|ZP_16501175.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1]
 gi|422428343|ref|ZP_16505254.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1]
 gi|422431261|ref|ZP_16508140.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2]
 gi|422435480|ref|ZP_16512337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2]
 gi|422443296|ref|ZP_16520094.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1]
 gi|422445458|ref|ZP_16522205.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1]
 gi|422448812|ref|ZP_16525537.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3]
 gi|422454695|ref|ZP_16531375.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3]
 gi|422461625|ref|ZP_16538249.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1]
 gi|422474494|ref|ZP_16550958.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1]
 gi|422477818|ref|ZP_16554241.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1]
 gi|422480374|ref|ZP_16556777.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1]
 gi|422482867|ref|ZP_16559256.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1]
 gi|422485657|ref|ZP_16562019.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2]
 gi|422488905|ref|ZP_16565234.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2]
 gi|422490999|ref|ZP_16567314.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1]
 gi|422498772|ref|ZP_16575044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3]
 gi|422502585|ref|ZP_16578830.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2]
 gi|422506532|ref|ZP_16582755.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2]
 gi|422507857|ref|ZP_16584038.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2]
 gi|422510904|ref|ZP_16587050.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1]
 gi|422513118|ref|ZP_16589241.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2]
 gi|422518352|ref|ZP_16594420.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1]
 gi|422521613|ref|ZP_16597643.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1]
 gi|422529447|ref|ZP_16605413.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1]
 gi|422534095|ref|ZP_16610019.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1]
 gi|422539713|ref|ZP_16615586.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1]
 gi|422547564|ref|ZP_16623380.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3]
 gi|422549418|ref|ZP_16625218.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1]
 gi|422552503|ref|ZP_16628294.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3]
 gi|422554455|ref|ZP_16630227.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2]
 gi|422556543|ref|ZP_16632297.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2]
 gi|422561235|ref|ZP_16636922.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1]
 gi|422563326|ref|ZP_16639003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1]
 gi|422568920|ref|ZP_16644538.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2]
 gi|422569688|ref|ZP_16645295.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1]
 gi|422578946|ref|ZP_16654470.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4]
 gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1]
 gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1]
 gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2]
 gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1]
 gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2]
 gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1]
 gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2]
 gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1]
 gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1]
 gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1]
 gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4]
 gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1]
 gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3]
 gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3]
 gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1]
 gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1]
 gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1]
 gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2]
 gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1]
 gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1]
 gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2]
 gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1]
 gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2]
 gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3]
 gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2]
 gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3]
 gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1]
 gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1]
 gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1]
 gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2]
 gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3]
 gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2]
 gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2]
 gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1]
 gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3]
 gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2]
 gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1]
 gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1]
 gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2]
 gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1]
          Length = 892

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 831  AEAALTSRVLLQV 843


>gi|190889822|ref|YP_001976364.1| DNA polymerase I [Rhizobium etli CIAT 652]
 gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polymerase I protein [Rhizobium etli
            CIAT 652]
          Length = 997

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 134/254 (52%), Gaps = 30/254 (11%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 717  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 776

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 777  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 815

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 816  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 873

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 874  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LA 931

Query: 1062 ELGW----KLLLQV 1071
            E G     ++LLQV
Sbjct: 932  EAGLAERVRMLLQV 945



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 61/251 (24%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED S+ KV  N  +D  +L+ YG++   F  DTM ++ + D+     G 
Sbjct: 463 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETKSFD-DTMLISYVLDAG---TGA 518

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +G+ +
Sbjct: 519 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGRAN 546

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L+               +   Y+
Sbjct: 547 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRLV------------AAGLTSVYE 589

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L +ME  G+ VDR+ LS      R   E A    R     +    +  N+G
Sbjct: 590 RLERPLLPVLARMEARGITVDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 643

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 644 SPKQLGDILFG 654


>gi|386743146|ref|YP_006216325.1| DNA polymerase I [Providencia stuartii MRSN 2154]
 gi|384479839|gb|AFH93634.1| DNA polymerase I [Providencia stuartii MRSN 2154]
          Length = 930

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/280 (36%), Positives = 146/280 (52%), Gaps = 29/280 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            L E  S+  L S +   LPL    +S K  RVH S +   T TGRLS+R PNLQN P   
Sbjct: 629  LLEHRSLAKLKSTYTDKLPLM---ISPKTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRT 685

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
            ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL+  K +L AF  G D H  TA  ++ 
Sbjct: 686  EEGRRIRQAFIARKGYKVVAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVF- 744

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
                                  VP L +  + +RR AK +NF + YG +  GLAR   + 
Sbjct: 745  ---------------------GVP-LDEVTSDQRRSAKAINFGLIYGMSAFGLARQLGIP 782

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
              EA++ +DL++     VL + E  + ++    +V TL GR      IKS    +R   E
Sbjct: 783  RGEAQRYMDLYFERYPGVLRYMENTRHQAAEQGYVETLEGRRLYLADIKSSNGMRRKAAE 842

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R AIN P+QG+AAD+   AM+ +    + ++    +L+QV
Sbjct: 843  REAINAPMQGTAADIIKKAMIAVDAWLQTEKPHADMLMQV 882


>gi|354606748|ref|ZP_09024718.1| hypothetical protein HMPREF1003_01285 [Propionibacterium sp.
            5_U_42AFAA]
 gi|386023735|ref|YP_005942038.1| DNA polymerase I [Propionibacterium acnes 266]
 gi|332675191|gb|AEE72007.1| DNA polymerase I [Propionibacterium acnes 266]
 gi|353556863|gb|EHC26232.1| hypothetical protein HMPREF1003_01285 [Propionibacterium sp.
            5_U_42AFAA]
          Length = 931

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 653  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 712

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 713  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 749

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 750  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 809

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 810  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 869

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 870  AEAALTSRVLLQV 882


>gi|422396181|ref|ZP_16476212.1| DNA polymerase I [Propionibacterium acnes HL097PA1]
 gi|422455904|ref|ZP_16532573.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
 gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
 gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1]
          Length = 892

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 831  AEAALTSRVLLQV 843


>gi|422496032|ref|ZP_16572319.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
 gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
          Length = 890

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 612  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 671

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 672  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 708

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 709  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 768

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 769  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 828

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 829  AEAALTSRVLLQV 841


>gi|416052203|ref|ZP_11578105.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
            str. SC1083]
 gi|347992293|gb|EGY33702.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype e
            str. SC1083]
          Length = 933

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 155/294 (52%), Gaps = 32/294 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++    +E   + +    L E   +  L S +   LP     V+ + GRVH 
Sbjct: 610  KGAPSTNEEVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 663

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  +I ADY Q+ELRI+AHL
Sbjct: 664  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 723

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +N + +++AF  G D H  TA  ++                       +P L+   + +R
Sbjct: 724  SNDQGLINAFAQGKDIHRSTAAEIF----------------------GLP-LEQVTSEQR 760

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+R   +S  +A++ +DL++     V T+    +++++   +
Sbjct: 761  RNAKAINFGLIYGMSSFGLSRQLGISRADAQRYMDLYFQRYPSVQTFIHDIREKAKAQGY 820

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM+++ +  R
Sbjct: 821  VETLFGRRLYLPEINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKLDELTR 874


>gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
 gi|417929820|ref|ZP_12573204.1| DNA-directed DNA polymerase [Propionibacterium acnes SK182]
 gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
 gi|340773943|gb|EGR96435.1| DNA-directed DNA polymerase [Propionibacterium acnes SK182]
          Length = 910

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 632  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 691

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 692  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 728

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 729  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 788

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 789  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 848

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 849  AEAALTSRVLLQV 861


>gi|335052215|ref|ZP_08545107.1| DNA-directed DNA polymerase [Propionibacterium sp. 409-HC1]
 gi|342212065|ref|ZP_08704790.1| DNA-directed DNA polymerase [Propionibacterium sp. CC003-HC2]
 gi|333764301|gb|EGL41698.1| DNA-directed DNA polymerase [Propionibacterium sp. 409-HC1]
 gi|340767609|gb|EGR90134.1| DNA-directed DNA polymerase [Propionibacterium sp. CC003-HC2]
          Length = 908

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 630  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 689

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 690  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 726

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 727  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 786

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 787  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 846

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 847  AEAALTSRVLLQV 859


>gi|450166566|ref|ZP_21882369.1| DNA polymerase I [Streptococcus mutans B]
 gi|449239555|gb|EMC38271.1| DNA polymerase I [Streptococcus mutans B]
          Length = 878

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 156/283 (55%), Gaps = 28/283 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            ++ + E   I  L S +I+ LQ S     +G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VAKILEYRQIAKLQSTYIIGLQDS--ISFDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+     S++++ DY Q+ELR+LAH++  + ++ AFK G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G ++P     +D   ++RR AK +NF + YG +  GLA + 
Sbjct: 690  VF-----------------GIERP-----EDVTPNDRRNAKAVNFGVVYGISDFGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  ++ ++    E+  + +   +E+R   +V TL  R R  P I S   + R+
Sbjct: 728  GISRKAAKNYIETYFERYPEIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRS 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + +  +  +   ++LLQV
Sbjct: 788  FAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQV 830


>gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
            exonuclease [Serratia symbiotica str. Tucson]
 gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
            exonuclease [Serratia symbiotica str. Tucson]
          Length = 933

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 150/287 (52%), Gaps = 34/287 (11%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA  G  
Sbjct: 648  LPLMINPVSG---RVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEDRRIRQAFIAPEGYR 704

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++                  
Sbjct: 705  IVAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFG----------------- 747

Query: 929  EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
                 VPL  D  ASE RR AK +NF + YG +  GLAR   V   EA++ +D ++    
Sbjct: 748  -----VPL--DKVASEQRRSAKAINFGLIYGMSAFGLARQLGVPRGEAQRYMDRYFERYP 800

Query: 988  EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
             VL + E  ++++    +V TL GR    P  +S    +R   ERAAIN P+QG+AAD+ 
Sbjct: 801  GVLDYMERTRQQAAEQGYVTTLDGRRLYLPDARSSNGMRRKAAERAAINAPMQGTAADII 860

Query: 1048 MCAMLEISKNARLKELGW---KLLLQVLFFFSFSFFSIIVIVSCQGI 1091
              AM+E+  +A ++E G    ++++QV     F     ++  S Q I
Sbjct: 861  KRAMIEV--DAWIQEQGQPLVRMIMQVHDELVFEVHESVIDASSQRI 905


>gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
 gi|417919540|ref|ZP_12563071.1| DNA-directed DNA polymerase [Streptococcus australis ATCC 700641]
 gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
 gi|342832921|gb|EGU67210.1| DNA-directed DNA polymerase [Streptococcus australis ATCC 700641]
          Length = 881

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 157/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I S I  +  I  +Q + V G      ++G++H   +   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAF+
Sbjct: 622  SVDPNLQNIPVRLEQGRL-IRKAFVPEEVNSVLLSSDYSQIELRVLAHISGDEHLIDAFQ 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         K+LLQV
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALEAGAYKTKMLLQV 833


>gi|422542622|ref|ZP_16618472.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1]
 gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1]
          Length = 892

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 831  AEAALTSRVLLQV 843


>gi|422452104|ref|ZP_16528805.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2]
 gi|422501053|ref|ZP_16577307.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2]
 gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2]
 gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2]
          Length = 892

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 831  AEAALTSRVLLQV 843


>gi|422437818|ref|ZP_16514662.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1]
 gi|422493044|ref|ZP_16569344.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1]
 gi|422515990|ref|ZP_16592099.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2]
 gi|422524659|ref|ZP_16600668.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2]
 gi|422532628|ref|ZP_16608574.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1]
 gi|422537626|ref|ZP_16613514.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1]
 gi|422545688|ref|ZP_16621518.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1]
 gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1]
 gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2]
 gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1]
 gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1]
 gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2]
 gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1]
 gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1]
          Length = 892

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 614  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 673

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 674  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 710

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 711  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 770

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 771  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 830

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 831  AEAALTSRVLLQV 843


>gi|404371696|ref|ZP_10977000.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 870

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 164/305 (53%), Gaps = 30/305 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            K   ++N ++    Q+  E    I+   ++  ++S    ++  L+  NV   +G +H S 
Sbjct: 546  KTGYSTNAEVLEKLQDKHEIIPKITYYRQITKLNS---TYVEGLK--NVIDSDGHIHSSF 600

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLA 886
            N   T TGRLS+  PNLQN P   +   +IR+ FI    G+ L+  DY Q+ELR+LAH++
Sbjct: 601  NQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFIPDEEGDILLSCDYSQIELRVLAHMS 660

Query: 887  NCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERR 946
            N ++M+DAFK   D H++TA  ++                    K P+   +D  +  R 
Sbjct: 661  NDENMIDAFKHHSDIHTKTASEVF--------------------KVPI---EDVTSLMRS 697

Query: 947  KAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006
            +AK +NF I YG +   L++D  ++ +EA + +++++    ++  + ++  +E++ + +V
Sbjct: 698  RAKAVNFGIVYGISDFSLSQDLHITKKEASEYMEIYFERYPKIKGYLDSVMQEAKENGYV 757

Query: 1007 HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK 1066
             T+L R R  P IKS  R  +   ER A+N P+QGSAAD+   AM+ +    + KEL   
Sbjct: 758  LTILNRRRFIPEIKSSNRIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLKEKELKST 817

Query: 1067 LLLQV 1071
            ++LQV
Sbjct: 818  MILQV 822


>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
 gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
          Length = 922

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/248 (38%), Positives = 130/248 (52%), Gaps = 29/248 (11%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 637  LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRK 693

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++                 G
Sbjct: 694  ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF-----------------G 736

Query: 929  EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
             D        D+  SE RR+AK +NF + YG +  GLAR   +   EA+  +D ++    
Sbjct: 737  TD-------FDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYIDTYFARYP 789

Query: 988  EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
             VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+ 
Sbjct: 790  GVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAADII 849

Query: 1048 MCAMLEIS 1055
              AM+ I+
Sbjct: 850  KKAMISIA 857



 Score = 43.1 bits (100), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 99/248 (39%), Gaps = 61/248 (24%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
           L +  P  ED  +KKV  N  +D  VL N G+++ G   DTM  + +++S  SR    G 
Sbjct: 395 LEKLRPILEDAKLKKVGQNLKYDISVLANAGIQLQGVVFDTMLESYVFNSVASRHDMDGL 454

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
           +L+ L G + +  ED                  GK + +  F + +L+         T A
Sbjct: 455 ALKYL-GHKNIAFED----------------IAGKGAKQLTFNQIQLE---------TAA 488

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
           P              Y+A D+  TL+L++ L        W    K     S+F    +  
Sbjct: 489 P--------------YAAEDADITLRLHQHL--------WPRLEKETELASVF---TDIE 523

Query: 603 QPFGEILVKMETEGMLVDREYLS-EIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            P  +IL  +E +G+ +D   L  + +++AR   E     +     K        N+ S 
Sbjct: 524 LPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETKAYDIAGEK-------FNLSSP 576

Query: 662 TQLRQLLF 669
            QL+ L F
Sbjct: 577 KQLQVLFF 584


>gi|384083000|ref|ZP_09994175.1| DNA polymerase A [gamma proteobacterium HIMB30]
          Length = 896

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/252 (36%), Positives = 135/252 (53%), Gaps = 24/252 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
            +GRVH S +   T TGRLS+  PNLQN P   ++  +IR+AF+A  G S++ ADY Q+EL
Sbjct: 620  DGRVHTSFHQAVTSTGRLSSSDPNLQNIPIRTEEGRRIRKAFVAPNGWSVMAADYSQIEL 679

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  +S++DAF  G D H  TA  ++                   D  P+ +  +
Sbjct: 680  RIMAHLSGDQSLVDAFSRGDDIHRATAAEVF-------------------DLEPMFVTDE 720

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
                +RR+AK +NF + YG +  GLAR   +   EA   +D ++     V  + ++ +  
Sbjct: 721  ----QRRRAKAINFGLIYGMSAFGLARQLGIERAEAAAYIDRYFERYPGVRHYMDSTRAM 776

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +    +V T+ GR    P I++     R   ERAAIN P+QG+AAD+   AML + K   
Sbjct: 777  AHEKGYVETVFGRRLTLPDIRARQVPIRQAAERAAINAPMQGTAADIIKRAMLRVQKALA 836

Query: 1060 LKELGWKLLLQV 1071
               LG  LLLQV
Sbjct: 837  TTNLGCNLLLQV 848



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 125/306 (40%), Gaps = 73/306 (23%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSC-IWVDLLDGGGRDL--- 424
           V A DTE   +  +      H E++  S+          GK+C + V  L G   D+   
Sbjct: 322 VFALDTETTSLVSR------HAELVGISLAPA------EGKACYVPVAHLAGEQLDITVV 369

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
           LN+ +    DP++  + HN  +D  VLE  GL      ADTM M+ + D++    G + +
Sbjct: 370 LNQVSKLLADPTLTMIGHNLKYDLTVLETVGLIPRCVLADTMLMSYVLDAA---GGRHDM 426

Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544
           ++L   ++++  D  +Y+    KG    GF                            P+
Sbjct: 427 DSLA--KRLLGIDTISYEDVCGKGAKQIGFAA-------------------------VPL 459

Query: 545 EELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQP 604
           E+           Y+A D+  TL+L+    ++L +       +P    S+   YQ+   P
Sbjct: 460 EQASE--------YAAEDADITLRLFNQFSRRLAD-------EP----SLQSIYQDLELP 500

Query: 605 FGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK-HCPDAKYMNVGSDTQ 663
              +L +ME  G L+D   L       R++ ++   R  +  S+      +  N+ S  Q
Sbjct: 501 VMLVLREMENHGALLDSAIL-------RSQSKSLGTRLEELESEAQTLAGRPFNLASPKQ 553

Query: 664 LRQLLF 669
           L+++LF
Sbjct: 554 LQEILF 559


>gi|417101705|ref|ZP_11960511.1| DNA-directed DNA polymerase, DNA polymerase I protein [Rhizobium etli
            CNPAF512]
 gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polymerase I protein [Rhizobium etli
            CNPAF512]
          Length = 997

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 134/254 (52%), Gaps = 30/254 (11%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 717  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 776

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 777  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 815

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 816  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 873

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 874  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LA 931

Query: 1062 ELGW----KLLLQV 1071
            E G     ++LLQV
Sbjct: 932  EAGLAERVRMLLQV 945



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 61/251 (24%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED S+ KV  N  +D  +L+ YG++   F  DTM ++ + D+     G 
Sbjct: 463 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETKSFD-DTMLISYVLDAG---TGA 518

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +G+ +
Sbjct: 519 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGRAN 546

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 547 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 589

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L +ME  G+ VDR+ LS      R   E A    R     +    +  N+G
Sbjct: 590 RLERPLLPVLARMEARGITVDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 643

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 644 SPKQLGDILFG 654


>gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202]
 gi|335053980|ref|ZP_08546805.1| DNA-directed DNA polymerase [Propionibacterium sp. 434-HC2]
 gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202]
 gi|333765761|gb|EGL43093.1| DNA-directed DNA polymerase [Propionibacterium sp. 434-HC2]
          Length = 931

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 653  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 712

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 713  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 749

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 750  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 809

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 810  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 869

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 870  AEAALTSRVLLQV 882


>gi|335031187|ref|ZP_08524639.1| DNA-directed DNA polymerase [Streptococcus anginosus SK52 = DSM
            20563]
 gi|333770241|gb|EGL47290.1| DNA-directed DNA polymerase [Streptococcus anginosus SK52 = DSM
            20563]
          Length = 881

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 157/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + +++AF+
Sbjct: 622  SVDPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDEHLIEAFR 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKAYMENVVREARDKGYVETLFHRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         ++LLQV
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALTDGNFKTRMLLQV 833


>gi|456739546|gb|EMF64085.1| DNA polymerase I [Propionibacterium acnes FZ1/2/0]
          Length = 915

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 637  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 696

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 697  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 733

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 734  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 793

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 794  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 853

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 854  AEAALTSRVLLQV 866


>gi|395204352|ref|ZP_10395292.1| DNA polymerase I [Propionibacterium humerusii P08]
 gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium humerusii P08]
          Length = 920

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/255 (36%), Positives = 147/255 (57%), Gaps = 29/255 (11%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 642  DGRVHTTYMQTIAATGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 701

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                      P    +
Sbjct: 702  MRIMAHVSGDQSLIDAFRSGQDFHTVTASHVF-------------------GVAP----E 738

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 739  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMAGYFSRFGKVHEYLEEVVD 798

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AM  ++ + 
Sbjct: 799  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAM--VATDQ 856

Query: 1059 RLKELGW--KLLLQV 1071
            +L E G   ++LLQV
Sbjct: 857  KLAEAGLTSRVLLQV 871


>gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
 gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
          Length = 881

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 157/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I S I  +  I  +Q + V G      ++G++H   +   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + ++DAF+
Sbjct: 622  SVDPNLQNIPVRLEQGRL-IRKAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFQ 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                   +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------NIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  ++ ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         K+LLQV
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALERGAYKTKMLLQV 833


>gi|387503158|ref|YP_005944387.1| DNA polymerase I [Propionibacterium acnes 6609]
 gi|419420984|ref|ZP_13961212.1| DNA polymerase I [Propionibacterium acnes PRP-38]
 gi|335277203|gb|AEH29108.1| DNA polymerase I [Propionibacterium acnes 6609]
 gi|379977475|gb|EIA10800.1| DNA polymerase I [Propionibacterium acnes PRP-38]
          Length = 915

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 637  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 696

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 697  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 733

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 734  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 793

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 794  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 853

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 854  AEAALTSRVLLQV 866


>gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3]
          Length = 732

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 134/254 (52%), Gaps = 30/254 (11%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 452  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 511

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 512  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 550

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 551  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 608

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM++I     L 
Sbjct: 609  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LA 666

Query: 1062 ELGW----KLLLQV 1071
            E G     ++LLQV
Sbjct: 667  EAGLAERVRMLLQV 680



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 61/251 (24%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED S+ KV  N  +D  +L+ YG++   F  DTM ++ + D+     G 
Sbjct: 198 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETKSFD-DTMLISYVLDAG---TGA 253

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +G+ +
Sbjct: 254 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGRAN 281

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 282 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 324

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L +ME  G+ VDR+ LS      R   E A    R     +    +  N+G
Sbjct: 325 RLERPLLPVLARMEARGITVDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 378

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 379 SPKQLGDILFG 389


>gi|3913510|sp|O52225.1|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI
            polymerase 1
 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis]
          Length = 833

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 151/297 (50%), Gaps = 31/297 (10%)

Query: 780  ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T Q A EA      + E+      +  L S ++ PL    V  + GR+H   N   T T
Sbjct: 513  STAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLP-RLVHPRTGRLHTRFNQTATAT 571

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       +IR+AF+A  G  L+ ADY Q+ELR+LAHL+  +++   
Sbjct: 572  GRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRV 631

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+ TA  M+                 G D    P L D     RR AK +NF 
Sbjct: 632  FREGKDIHTETAAWMF-----------------GLD----PALVDP--KMRRAAKTVNFG 668

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG +   L+++  +  +EA+  ++ ++    +V  W E   +E R   +V TL GR R
Sbjct: 669  VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              P + S  RS R   ER A N PVQG+AAD+   AM+++    RLK LG  LLLQV
Sbjct: 729  YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLF--PRLKPLGAHLLLQV 783


>gi|294810416|ref|ZP_06769073.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
 gi|294442381|gb|EFG11191.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
          Length = 340

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 154/307 (50%), Gaps = 33/307 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+       +  + E   +  L+  +I  LPL    ++ + GRVH S N   
Sbjct: 19   YVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLL---INPRTGRVHTSFNQTV 75

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P  +++  +IR+AFI   G     ADY Q+ELRI+AHL+  K+M
Sbjct: 76   TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 135

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            +DAF +  D H+ TA  +Y                          LKD  +  RRKAK  
Sbjct: 136  IDAFLSNHDIHAATAAKIYK-----------------------IDLKDVDSDMRRKAKTA 172

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++     V  + +   + ++   +V T+  
Sbjct: 173  NFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFH 232

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM  I +  + + +  K++LQV
Sbjct: 233  RKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQV 292

Query: 1072 LFFFSFS 1078
                +FS
Sbjct: 293  HDELNFS 299


>gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
 gi|365973666|ref|YP_004955225.1| DNA polymerase I [Propionibacterium acnes TypeIA2 P.acn33]
 gi|407935187|ref|YP_006850829.1| DNA polymerase I [Propionibacterium acnes C1]
 gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
 gi|365743665|gb|AEW78862.1| DNA polymerase I [Propionibacterium acnes TypeIA2 P.acn33]
 gi|407903768|gb|AFU40598.1| DNA polymerase I [Propionibacterium acnes C1]
          Length = 915

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 637  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 696

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 697  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 733

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 734  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 793

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 794  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 853

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 854  AEAALTSRVLLQV 866


>gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4]
 gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4]
          Length = 992

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 135/259 (52%), Gaps = 28/259 (10%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  +  RVH S ++  T TGRLS+  PNLQN P    +  KIR AFI+ PG+ L+ ADY 
Sbjct: 706  VHPQTKRVHTSYSMAATTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYS 765

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+                       VP
Sbjct: 766  QIELRVLAHVADIPQLRQAFADGVDIHAMTASEMF----------------------GVP 803

Query: 936  LLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            +  D   SE RR+AK +NF I YG +  GLA    +   EA + +  ++     +  + E
Sbjct: 804  V--DGMPSEVRRRAKAINFGIIYGISAFGLANQLSIERAEAGEYIKKYFERFPGIKDYME 861

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
            + K   R   +V T+ GR   +P IKS   S R   ERAAIN P+QGSAADV   AM+++
Sbjct: 862  STKAFVREHGYVETIFGRRAHYPEIKSSNPSMRAFNERAAINAPIQGSAADVIRRAMVQV 921

Query: 1055 SKNARLKELGWK--LLLQV 1071
                    LG K  +LLQV
Sbjct: 922  EPALAKAGLGEKTRMLLQV 940



 Score = 47.8 bits (112), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 99/248 (39%), Gaps = 61/248 (24%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSL 484
           L       ED S+ KV  N  +D  V++ +G+ + GF  DTM ++            Y L
Sbjct: 461 LTALKGLLEDASVLKVAQNLKYDYLVMKRHGIVIRGFD-DTMLLS------------YVL 507

Query: 485 EALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKISTIA 542
           EA  G          A+  D    +  E ++G   I  K++ G         +GK     
Sbjct: 508 EAGVG----------AHGMD----SLSERWLGHTPIPYKEVAG---------SGKSLVTF 544

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
            + ++ +       +Y+A D+  TL+L+  LK +L  +             +   Y+   
Sbjct: 545 DLVDIDKA-----TAYAAEDADVTLRLWLVLKPRLAAVG------------LARVYERLE 587

Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
           +P   +L  ME  G+ +DR+ LS +      +  A  +   + A +        NVGS  
Sbjct: 588 RPLVPVLADMEERGITIDRQILSRLSGELAQKAAAFEDEIYELAGER------FNVGSPK 641

Query: 663 QLRQLLFG 670
           QL  +LFG
Sbjct: 642 QLGDILFG 649


>gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|387869289|ref|YP_005700758.1| DNA polymerase I [Edwardsiella tarda FL6-60]
 gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60]
          Length = 930

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 156/309 (50%), Gaps = 39/309 (12%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVC----SIDSLISNFI--LPLQGSNVSGKNGR 823
            GA ++N ++ A      E  D   AL +V     ++  L S +   LP     V+   GR
Sbjct: 606  GAPSTNEEVLA------ELADQGYALPQVILEYRTLAKLKSTYTDKLP---QMVNPLTGR 656

Query: 824  VHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRIL 882
            VH S +   T TGRLS+  PNLQN P    +  +IRQAFIA  G+ ++ ADY Q+ELRI+
Sbjct: 657  VHTSYHQAVTATGRLSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSRIVAADYSQIELRIM 716

Query: 883  AHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFA 942
            AHL+  K +L AF AG D H  TA  ++     AV                        A
Sbjct: 717  AHLSGDKGLLAAFAAGKDIHRATAAEVFGLPLEAVS-----------------------A 753

Query: 943  SERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRI 1002
             +RR AK +NF + YG +  GLAR   +   EA++ +DL++     VL + E  ++ +  
Sbjct: 754  DQRRSAKAINFGLIYGMSAFGLARQLNIGRGEAQRYMDLYFERYPGVLAYMERTRQLASD 813

Query: 1003 DNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKE 1062
              +V TL GR    P I +    +R   ERAAIN P+QG+AAD+   AM+ +    +  +
Sbjct: 814  QGYVETLDGRRLYLPEINARNGMRRKAAERAAINAPMQGTAADIIKRAMIAVDGWLQEAQ 873

Query: 1063 LGWKLLLQV 1071
               ++++QV
Sbjct: 874  PEVRMIMQV 882


>gi|365962488|ref|YP_004944054.1| DNA polymerase I [Propionibacterium acnes TypeIA2 P.acn31]
 gi|365739169|gb|AEW83371.1| DNA polymerase I [Propionibacterium acnes TypeIA2 P.acn31]
          Length = 915

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 637  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 696

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 697  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 733

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 734  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 793

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 794  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 853

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 854  AEAALTSRVLLQV 866


>gi|417750609|ref|ZP_12398964.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis S397]
 gi|336457772|gb|EGO36766.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis S397]
          Length = 913

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 138/258 (53%), Gaps = 25/258 (9%)

Query: 816  NVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVAD 873
            N    +GR+H + N     TGRLS+  PNLQN P   +   +IR AF+   G + L+ AD
Sbjct: 630  NSVASDGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYAELMTAD 689

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+E+RI+AHL+    +++AF  G D HS  A   +         G  + E  GE    
Sbjct: 690  YSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAF---------GVPIEEVTGE---- 736

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+ K +++ +AYG +  GL++  K+S EEAK+ +D ++     V  + 
Sbjct: 737  ----------LRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMDAYFARFGGVRDYL 786

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
             A  +++R D +  T+LGR R  P + S  R  R   ERAA+N P+QGSAAD+   AM+E
Sbjct: 787  HAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIE 846

Query: 1054 ISKNARLKELGWKLLLQV 1071
            + K  +   L  ++LLQV
Sbjct: 847  VDKAIKEAGLRSRILLQV 864


>gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1]
          Length = 830

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 149/293 (50%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L   +I PL  + V  K  R+H   N   T TGRLS
Sbjct: 515  AVLEALREAHPIVDRILQYRELSKLKGTYIDPLP-ALVHPKTNRLHTRFNQTATATGRLS 573

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G  L+V DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 574  SSDPNLQNIPVRTPLGQRIRRAFVAEEGWKLVVLDYSQIELRVLAHLSGDENLIRVFQEG 633

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV++                         RR AK +NF + YG
Sbjct: 634  QDIHTQTASWMFGVPPEAVDSLM-----------------------RRAAKTINFGVLYG 670

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+ +  +  EEA   ++ ++    +V  W E    E R   +V TL GR R  P 
Sbjct: 671  MSAHRLSGELAIPYEEAVAFIERYFQSYPKVRAWIEKTLAEGRERGYVETLFGRRRYVPD 730

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            + S  +S R   ER A N PVQG+AAD+   AM+++    RL+ELG ++LLQV
Sbjct: 731  LASRVKSIREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLQELGARMLLQV 781


>gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis]
          Length = 833

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 151/297 (50%), Gaps = 31/297 (10%)

Query: 780  ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T Q A EA      + E+      +  L S ++ PL    V  + GR+H   N   T T
Sbjct: 513  STAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLP-RLVHPRTGRLHTRFNQTATAT 571

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       +IR+AF+A  G  L+ ADY Q+ELR+LAHL+  +++   
Sbjct: 572  GRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRV 631

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+ TA  M+                 G D    P L D     RR AK +NF 
Sbjct: 632  FREGKDIHTETAAWMF-----------------GLD----PALVDP--KMRRAAKTVNFG 668

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG +   L+++  +  +EA+  ++ ++    +V  W E   +E R   +V TL GR R
Sbjct: 669  VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              P + S  RS R   ER A N PVQG+AAD+   AM+++    RLK LG  LLLQV
Sbjct: 729  YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLF--PRLKPLGAHLLLQV 783


>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
 gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
          Length = 922

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/248 (38%), Positives = 130/248 (52%), Gaps = 29/248 (11%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 637  LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRK 693

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++                 G
Sbjct: 694  ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVF-----------------G 736

Query: 929  EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
             D        D+  SE RR+AK +NF + YG +  GLAR   +   EA+  +D ++    
Sbjct: 737  TD-------FDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYIDTYFARYP 789

Query: 988  EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
             VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+ 
Sbjct: 790  GVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAADII 849

Query: 1048 MCAMLEIS 1055
              AM+ I+
Sbjct: 850  KKAMISIA 857



 Score = 42.4 bits (98), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
           L +  P  ED  +KKV  N  +D  VL N G+++ G   DTM  + +++S  SR    G 
Sbjct: 395 LEKLRPILEDAKLKKVGQNLKYDISVLANAGIQLKGVVFDTMLESYVFNSVASRHDMDGL 454

Query: 483 SLEALTGDRKVMSED 497
           +L+ L G + +  ED
Sbjct: 455 ALKYL-GHKNIAFED 468


>gi|349688266|ref|ZP_08899408.1| DNA polymerase I [Gluconacetobacter oboediens 174Bp2]
          Length = 922

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/258 (36%), Positives = 137/258 (53%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            + ++   GRVH S  +  T TGRLS+  PNLQN P   ++  +IR+AF+A PG+ L+ AD
Sbjct: 640  NQINPATGRVHTSFQMAVTTTGRLSSNDPNLQNIPIRTEEGGRIRRAFVAAPGHVLVSAD 699

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LA +A+  ++ +AF+ G D H+RTA  ++             +   G D   
Sbjct: 700  YSQIELRLLADVADIPALREAFELGQDIHARTASEVFG------------IPLEGMD--- 744

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             PL        RR+AK +NF I YG +  GL R   +   EA+  +D ++     +  + 
Sbjct: 745  -PL-------TRRRAKAINFGIIYGISAFGLGRQLGIPPGEARGYIDAYFARYPGIRDYM 796

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  K E+R   +V T  GR    P I   +  +RN+ ER AIN P+QG AAD+   AM+ 
Sbjct: 797  ERVKAEARAKGYVTTPFGRRCWVPGIADKSAVRRNYAERQAINAPLQGGAADIIKRAMVR 856

Query: 1054 ISKNARLKELGWKLLLQV 1071
            I        L  ++LLQV
Sbjct: 857  IPAALSDAGLDGRMLLQV 874


>gi|422440254|ref|ZP_16517068.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3]
 gi|422471378|ref|ZP_16547878.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2]
 gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2]
 gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3]
          Length = 883

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/255 (36%), Positives = 147/255 (57%), Gaps = 29/255 (11%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 605  DGRVHTTYMQTIAATGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 664

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 665  MRIMAHVSGDQSLIDAFRSGQDFHTVTASHVF---------------------GVAP--E 701

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 702  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMAGYFSRFGKVHEYLEEVVD 761

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AM  ++ + 
Sbjct: 762  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAM--VATDQ 819

Query: 1059 RLKELGW--KLLLQV 1071
            +L E G   ++LLQV
Sbjct: 820  KLAEAGLTSRVLLQV 834


>gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2]
          Length = 833

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 151/297 (50%), Gaps = 31/297 (10%)

Query: 780  ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T Q A EA      + E+      +  L S ++ PL    V  + GR+H   N   T T
Sbjct: 513  STAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLP-RLVHPRTGRLHTRFNQTATAT 571

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       +IR+AF+A  G  L+ ADY Q+ELR+LAHL+  +++   
Sbjct: 572  GRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRV 631

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+ TA  M+                 G D    P L D     RR AK +NF 
Sbjct: 632  FREGKDIHTETAAWMF-----------------GLD----PALVDP--KMRRAAKTVNFG 668

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG +   L+++  +  +EA+  ++ ++    +V  W E   +E R   +V TL GR R
Sbjct: 669  VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              P + S  RS R   ER A N PVQG+AAD+   AM+++    RLK LG  LLLQV
Sbjct: 729  YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLF--PRLKPLGAHLLLQV 783


>gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Photobacterium angustum S14]
 gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14]
          Length = 923

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 142/257 (55%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+   GRVH S +   T TGRLS+  PNLQN P   ++  +IRQAF+A  G  ++  DY 
Sbjct: 642  VNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYS 701

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K++LDAF+ G D H+ TA  +            + L+          
Sbjct: 702  QIELRIMAHLSGDKALLDAFRHGKDIHAATAAEI------------LSLD---------- 739

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             +++  + +RR+AK +NF + YG +  GLA+   +   EA+  +++++     VL + E+
Sbjct: 740  -IEEVSSEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQNYMNVYFERYPGVLEYMES 798

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  +    +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+   AM+ + 
Sbjct: 799  TRNAASEQGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPMQGTAADIIKLAMIAVD 858

Query: 1056 KNARLKELG-WKLLLQV 1071
               + +  G  +LL+QV
Sbjct: 859  GWVQQQPEGNVRLLMQV 875


>gi|365964730|ref|YP_004946295.1| DNA polymerase I [Propionibacterium acnes TypeIA2 P.acn17]
 gi|365741411|gb|AEW81105.1| DNA polymerase I [Propionibacterium acnes TypeIA2 P.acn17]
          Length = 915

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 637  DGRVHTTYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIE 696

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 697  MRIMAHVSGDQSLIDAFQSGQDFHTVTASHVF---------------------GVAP--E 733

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 734  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVD 793

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 794  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 853

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 854  AEAALTSRVLLQV 866


>gi|357634312|ref|ZP_09132190.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
 gi|357582866|gb|EHJ48199.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
          Length = 878

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 148/297 (49%), Gaps = 30/297 (10%)

Query: 780  ATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T QEA E        +  + E   ++ L S ++ PL    ++   GR+H + N + T T
Sbjct: 559  STSQEALERLAGENPLVDRILEFRKLEKLRSTYLDPL--PRLADAAGRIHTTFNNLATAT 616

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       ++R+ F+A  G  L+ ADY Q+ELR+LAHL+   ++L A
Sbjct: 617  GRLSSSNPNLQNIPIRGTLGRRMRECFVAAAGKKLVAADYSQIELRVLAHLSGEPALLAA 676

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+RTA  ++                   DK    +  D    ERR+AK +NF 
Sbjct: 677  FEQGADIHARTAAILF-------------------DKAEADIRPD----ERRQAKTINFG 713

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG  P  L+RD  + ++ AK  ++ ++     + T+ +     ++    V TL GR R
Sbjct: 714  LLYGMGPQKLSRDLGIKLDAAKAFIEKYFERLSGLSTFYQGIVDTAKAQGFVTTLAGRRR 773

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              P I S      +   R AINT VQG AAD+   AML    +  L  LG  ++LQV
Sbjct: 774  LLPEIHSANSQLASQARRQAINTVVQGGAADIIKMAMLAAHNDPELAGLGAAMVLQV 830


>gi|448244558|ref|YP_007408611.1| DNA polymerase I [Serratia marcescens WW4]
 gi|445214922|gb|AGE20592.1| DNA polymerase I [Serratia marcescens WW4]
          Length = 932

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/246 (37%), Positives = 134/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    ++  +GRVH S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLM---INPASGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYR 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  + +L AF  G D H  TA  ++                  
Sbjct: 704  IVAADYSQIELRIMAHLSQDEGLLKAFAEGKDIHRATASEVFG----------------- 746

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 VPL K     +RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 747  -----VPLDK-VTGEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++    +V TL GR    P ++S    +R   ERAAIN P+QG+AAD+  
Sbjct: 801  VLDYMERTRQQASEQGYVSTLDGRRLYLPDVRSSNAMRRKAAERAAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+E+
Sbjct: 861  RAMIEV 866


>gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 976

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/253 (36%), Positives = 136/253 (53%), Gaps = 26/253 (10%)

Query: 821  NGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GR+H S ++ +T TGRLS+  PNLQN P   ++   IR AF+A  G+SL+ ADY Q+EL
Sbjct: 696  QGRIHTSYSMASTTTGRLSSSEPNLQNIPVRTEEGRAIRTAFVAPAGHSLVSADYSQIEL 755

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RILAH+A+   + +AF+ G D H+ TA  M+                       VP+  +
Sbjct: 756  RILAHIADIPQLKEAFREGLDIHAMTASEMF----------------------GVPV--E 791

Query: 940  AFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               SE RR+AK +NF I YG +  GLA    +  +EA   +  ++     +  + ++ K 
Sbjct: 792  GMPSEIRRRAKAINFGIIYGISAFGLANQLSIPRDEAGTYIKRYFERFPGIRDYMDSTKA 851

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             ++   HV TL GR   +P I+S   S R   ERAAIN P+QG+AAD+   AM+ +    
Sbjct: 852  FAKEHGHVETLFGRRVHYPDIRSPNASVRAFNERAAINAPIQGTAADIIRRAMIRMEPAL 911

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 912  ADAGLSARMLLQV 924



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 104/251 (41%), Gaps = 61/251 (24%)

Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
           P  ED ++ K+  N  +D  V+  +G+ ++ F  DTM ++   D+S  +  G+ ++ L+ 
Sbjct: 451 PVLEDDAVLKIGQNVKYDYLVMRRHGITMAPFD-DTMLISYALDASA-SLAGHGMDELS- 507

Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKISTIAPVEEL 547
                                 E F+G   +S K++ G  K  +  +A  I  +      
Sbjct: 508 ----------------------ERFLGHKPMSYKELCGSGKGARPIAACAIDKVT----- 540

Query: 548 QREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGE 607
                    +Y+A D+  TL+L++ LK +L+             + +   Y+   +P   
Sbjct: 541 ---------AYAAEDADVTLRLWQVLKPRLV------------AEGLATVYERLERPLVA 579

Query: 608 ILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQL 667
           +L +ME  G+ VDR+ LS +      +Q        + A       +  N GS  QL ++
Sbjct: 580 VLARMEERGIKVDRQILSRLSGRFAQKQAGLEAEIAEIA------GETFNPGSPKQLGEV 633

Query: 668 LFG--GKPNSK 676
           LFG  G P  K
Sbjct: 634 LFGKLGLPGGK 644


>gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
 gi|424900033|ref|ZP_18323575.1| DNA polymerase I [Prevotella bivia DSM 20514]
 gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
 gi|388592233|gb|EIM32472.1| DNA polymerase I [Prevotella bivia DSM 20514]
          Length = 920

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 156/307 (50%), Gaps = 29/307 (9%)

Query: 779  FATEQEAREACDA----ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTE 833
            + T +E  ++ +A    +  + +   I  L+S +I  L    ++ + G +H S N   T 
Sbjct: 599  YVTSEEVLQSLEASAPIVGNILKYRGIKKLLSTYIDALP-KLINKRTGHIHTSFNQALTA 657

Query: 834  TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLD 893
            TGRLS+  PNLQN P    D  +IR+ FI  P      ADY Q+ELRI+AHL+  ++M++
Sbjct: 658  TGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEPKCLFFSADYSQIELRIMAHLSQDENMME 717

Query: 894  AFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNF 953
            AF++G D H  TA  +                WH      VP+ ++   ++R+KAK  NF
Sbjct: 718  AFRSGHDIHRATAAKI----------------WH------VPM-EEVSDAQRKKAKQANF 754

Query: 954  SIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRA 1013
             I YG T  GLA+   +   EAK+ ++ ++     V  + E  K+ +R   +  TL  R 
Sbjct: 755  GIIYGITTYGLAQRMGIPNGEAKELIEGYFKTFPSVKAFMEKAKQTAREKGYAETLFNRR 814

Query: 1014 RRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLF 1073
            R    I S   + R   ER AIN P+QG+ AD+   AM+ I +  R + +  K++LQV  
Sbjct: 815  RYLSDINSKNGTVRGFAERNAINAPIQGTEADIIKVAMIRIWERFRRENIRSKMILQVHD 874

Query: 1074 FFSFSFF 1080
              +FS F
Sbjct: 875  ELNFSVF 881



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 127/332 (38%), Gaps = 86/332 (25%)

Query: 347 VVDNVSAAKKVV-WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADF 405
           ++DN   A K+  ++LT+K    V + DTE    D  Q   V     + F+I        
Sbjct: 330 LIDNEEEASKLCDFLLTSK----VLSLDTETTSTDTMQAELVG----LSFAI-------- 373

Query: 406 GNGKSCIWVDLLDG--GGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHA 463
              K   +V +          +N F P +E+ +I KV  N  +D  VL  YG+ + G   
Sbjct: 374 -EEKKAFYVAIPSDRREAEKFVNIFRPLYENENILKVGQNIKYDYEVLAQYGIDIKGKMF 432

Query: 464 DTMHMARLWDSSRRTEGGYSLEALTGDRKVMSED----KKAYQKDMSKGNTDEGFMGKIS 519
           DTM    L          Y  E L G + V  ++    K  +QK+M            +S
Sbjct: 433 DTMIAHYLIQPELHHNMDYMAETLLGYKTVHIDELIGAKGKHQKNMR----------DLS 482

Query: 520 MKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLE 579
             DI+                                 Y++ D+  TL+LYK L+ KL E
Sbjct: 483 PTDIY--------------------------------EYASEDADITLQLYKVLEPKLKE 510

Query: 580 MSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAV 639
           ++ +            D + +   P   +L  ME  G+ +D + L+E  K+         
Sbjct: 511 VNAE------------DLFWKIEMPLVRVLADMEMNGVCLDTDALAETSKI-------FT 551

Query: 640 NRFRKW-ASKHCPDAKYMNVGSDTQLRQLLFG 670
           +R  ++ A  +   ++  N+ S  Q+  +LFG
Sbjct: 552 DRMNEYEALIYEQASEKFNISSPKQVGDILFG 583


>gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 919

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 138/258 (53%), Gaps = 25/258 (9%)

Query: 816  NVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVAD 873
            N    +GR+H + N     TGRLS+  PNLQN P   +   +IR AF+   G + L+ AD
Sbjct: 636  NSVASDGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYAELMTAD 695

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+E+RI+AHL+    +++AF  G D HS  A   +         G  + E  GE    
Sbjct: 696  YSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAF---------GVPIEEVTGE---- 742

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+ K +++ +AYG +  GL++  K+S EEAK+ +D ++     V  + 
Sbjct: 743  ----------LRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMDAYFARFGGVRDYL 792

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
             A  +++R D +  T+LGR R  P + S  R  R   ERAA+N P+QGSAAD+   AM+E
Sbjct: 793  HAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIE 852

Query: 1054 ISKNARLKELGWKLLLQV 1071
            + K  +   L  ++LLQV
Sbjct: 853  VDKAIKEAGLRSRILLQV 870


>gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
            BAA-614]
 gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
            BAA-614]
          Length = 906

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 136/253 (53%), Gaps = 25/253 (9%)

Query: 821  NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +GR+H + N     TGRLS+  PNLQN P   +   +IR AF+   G S L+ ADY Q+E
Sbjct: 628  DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYSELMTADYSQIE 687

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AHL+  + +++AF  G D HS  A   +      V  G+V  E             
Sbjct: 688  MRIMAHLSRDEGLIEAFNTGEDLHSFVASRAF-----GVPIGEVTAEL------------ 730

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                  RR+ K +++ +AYG +  GL++  K+S EEAK+ +D ++     V  +      
Sbjct: 731  ------RRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMDAYFARFGGVRDYLMNIVD 784

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R D +  T+LGR R  P + S  R  R   ERAA+N P+QGSAAD+   AM+E+ K  
Sbjct: 785  QARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIEVDKAI 844

Query: 1059 RLKELGWKLLLQV 1071
            +   L  ++LLQV
Sbjct: 845  KEAGLKSRMLLQV 857


>gi|399041520|ref|ZP_10736575.1| DNA polymerase I [Rhizobium sp. CF122]
 gi|398060290|gb|EJL52119.1| DNA polymerase I [Rhizobium sp. CF122]
          Length = 999

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/253 (37%), Positives = 135/253 (53%), Gaps = 28/253 (11%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 719  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 778

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF  G D H+ TA  M+                       VP+  +  
Sbjct: 779  LAHVAEIPQLTQAFADGVDIHAMTASEMF----------------------SVPV--EGM 814

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + ++RK+ +
Sbjct: 815  PSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMDSRKQMA 874

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   +P I+S   S R   ERAAIN P+QGSAAD+   AM+++      
Sbjct: 875  RDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADIIRRAMIKMEPALAE 934

Query: 1061 KELG--WKLLLQV 1071
              LG   ++LLQV
Sbjct: 935  AGLGDRVRMLLQV 947



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 99/251 (39%), Gaps = 61/251 (24%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED SI KV  N  +D  +++ YG++ + F  DTM ++ + D+     G 
Sbjct: 465 RDALPRLKALLEDESILKVAQNLKYDYLLMKRYGVETTNFD-DTMLISYVLDAG---TGA 520

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I+ KD+ G         +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIAYKDVAG---------SGKSN 548

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L              + +   Y+
Sbjct: 549 ITFDLVDIDRATH-----YAAEDADITLRLWLVLKPRL------------AAEKLTTVYE 591

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L  ME  G+ VDR+ LS +         A  +   K A           +G
Sbjct: 592 RLERPLLPVLAHMEARGITVDRQILSRLSGDLAQGAAALEDEIYKLAGGR------FTIG 645

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 646 SPKQLGDILFG 656


>gi|339000058|ref|ZP_08638681.1| DNA polymerase I [Halomonas sp. TD01]
 gi|338763114|gb|EGP18123.1| DNA polymerase I [Halomonas sp. TD01]
          Length = 924

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/252 (35%), Positives = 135/252 (53%), Gaps = 24/252 (9%)

Query: 821  NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GRVH S +   T TGRLS+  PNLQN P   ++  KIRQAF+A PG  ++ ADY Q+EL
Sbjct: 648  TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRKIRQAFVARPGYRIVAADYSQIEL 707

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            RI+AHL+  K +L+AF  G D H+ TA  ++                          L+ 
Sbjct: 708  RIMAHLSEDKGLLNAFAEGRDIHTATAAEVFGTA-----------------------LEK 744

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
              A +RR AK +NF + YG +  GL+R   +   +A+  +D +++    V  + +  + +
Sbjct: 745  VSADQRRSAKAINFGLIYGMSAWGLSRQLHIDRNQAQTYIDRYFDRYPGVARYMDRIRTQ 804

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +  D  V T+LGR    P I S  R++R   ER AIN P+QG+AAD+   AM+++     
Sbjct: 805  AAEDGFVETVLGRRLYLPEIHSQNRNRRQGAERTAINAPMQGTAADIIKQAMIDVDAWLA 864

Query: 1060 LKELGWKLLLQV 1071
             +E    +++QV
Sbjct: 865  EEEFDALMVMQV 876


>gi|315125371|ref|YP_004067374.1| DNA polymerase I [Pseudoalteromonas sp. SM9913]
 gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
            3'->5' polymerase; 3'->5' exonuclease (C-terminal)
            [Pseudoalteromonas sp. SM9913]
          Length = 911

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 131/239 (54%), Gaps = 24/239 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ +  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  ++ ADY 
Sbjct: 630  VNERTQRVHTSYHQAVTATGRLSSSDPNLQNIPIRSEEGRRIREAFIAADGYKIVAADYS 689

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +L AF  G D HS TA  ++      VE                 
Sbjct: 690  QIELRIMAHLSQDKGLLSAFANGLDVHSATAAEVF-----GVE----------------- 727

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             L++  +  RRKAK +NF + YG +  GLAR   V   EA+  +D ++     VL + E 
Sbjct: 728  -LEEVTSDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPGVLEYMET 786

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+   AML +
Sbjct: 787  TREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIKKAMLSV 845


>gi|402496809|ref|YP_006556069.1| DNA polymerase I [Wolbachia endosymbiont of Onchocerca ochengi]
 gi|398650082|emb|CCF78252.1| DNA polymerase I [Wolbachia endosymbiont of Onchocerca ochengi]
          Length = 862

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/251 (38%), Positives = 135/251 (53%), Gaps = 27/251 (10%)

Query: 821  NGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELR 880
            +GRVH   +  T TGRLS+  PNLQN P   K+   IRQAFIA  G  +I ADY Q+ELR
Sbjct: 573  DGRVHTIFS-TTATGRLSSSNPNLQNIPIRSKEGNLIRQAFIAPKGCKIISADYSQIELR 631

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+AN  +  +AF    D H+ TA  ++      V+ G         DK         
Sbjct: 632  LLAHIANITAFKEAFVNKQDIHNITARQVF-----RVQEGA------NVDK--------- 671

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
                R+KAK +NF I YG +P GLAR +K++V EA + +D +++   E+  + E +   +
Sbjct: 672  --QLRQKAKSVNFGIIYGISPFGLARRFKITVREAAEYIDYYFSCYPEIKIYMEEKVSAA 729

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V TL GR      I +     R   ERAAIN PVQG+AAD+   AM+++    + 
Sbjct: 730  RQHGYVETLFGRRCFLKDINNTIPYLRQFAERAAINAPVQGTAADIIKLAMVQLHDQLK- 788

Query: 1061 KELGWKLLLQV 1071
                 K++LQV
Sbjct: 789  ---SGKIILQV 796


>gi|359438125|ref|ZP_09228166.1| DNA polymerase I [Pseudoalteromonas sp. BSi20311]
 gi|358027176|dbj|GAA64415.1| DNA polymerase I [Pseudoalteromonas sp. BSi20311]
          Length = 911

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 132/239 (55%), Gaps = 24/239 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ +  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  ++ ADY 
Sbjct: 630  VNEQTKRVHTSYHQAVTATGRLSSSDPNLQNIPIRSEEGRRIREAFIAADGYKIVAADYS 689

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +L+AF  G D HS TA  ++      VE                 
Sbjct: 690  QIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF-----GVE----------------- 727

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             L++  +  RRKAK +NF + YG +  GLAR   V   EA+  +D ++     VL + E 
Sbjct: 728  -LEEVTSDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPGVLEYMET 786

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+   AML +
Sbjct: 787  TREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIKKAMLTV 845


>gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
 gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
          Length = 980

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/258 (36%), Positives = 136/258 (52%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S ++ + GRVH S ++ +T TGRLS+  PN+QN P    +  KIRQAFIA  G  LI AD
Sbjct: 694  SFINQETGRVHTSFSLASTSTGRLSSSEPNIQNIPIRTSEGRKIRQAFIAEKGKKLISAD 753

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+   +  AF  G D H+ TA  M+             +   G D   
Sbjct: 754  YSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMFG------------VPIEGMD--- 798

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             P++       RR+AK +NF I YG +  GLA    ++  EA   +  ++     +  + 
Sbjct: 799  -PMV-------RRRAKAINFGIIYGISAFGLANQLGIARGEAGDYIKTYFERFPGIKDYM 850

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  KK    + +V T+ GR   +P + +   + R   ERAAIN P+QGSAAD+   AM+ 
Sbjct: 851  EETKKFVHANGYVETIFGRRAHYPDVNTKNPNMRQFYERAAINAPIQGSAADIIRRAMVR 910

Query: 1054 ISKNARLKELGWKLLLQV 1071
            + +      L  ++LLQV
Sbjct: 911  MDEVLETANLDAQMLLQV 928



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 105/249 (42%), Gaps = 59/249 (23%)

Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
           P  EDP++ K+  N  +D  VL+ YG++++ F  DTM ++   D+     GG  ++ L+ 
Sbjct: 456 PMLEDPAVLKIAQNMKYDWLVLKRYGVEMAPFD-DTMLLSYALDAGM---GGNGMDELS- 510

Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
            ++ ++     +++    G +      +IS    F +  L K                  
Sbjct: 511 -QRWLNHTPIPFKEVCGSGKS------QIS----FDKVPLDKA----------------- 542

Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
                  +Y+A D+  TL+L+K LK +L              + M   Y+   +P    L
Sbjct: 543 ------TAYAAEDADVTLRLWKILKPRL------------AAEEMTVVYERLERPMVATL 584

Query: 610 VKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
            KME  G+ +DR+ LS +        E A    R  +  H    +  NVGS  QL ++LF
Sbjct: 585 AKMERRGISIDRQMLSLLSG------EFAQGAARLESEIHDVAGEIFNVGSPKQLGEILF 638

Query: 670 G--GKPNSK 676
           G  G P  K
Sbjct: 639 GKMGLPGGK 647


>gi|410629263|ref|ZP_11339967.1| DNA polymerase I [Glaciecola mesophila KMM 241]
 gi|410151059|dbj|GAC26736.1| DNA polymerase I [Glaciecola mesophila KMM 241]
          Length = 928

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 132/239 (55%), Gaps = 24/239 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ ++GRVH S +   T TGRLS+  PNLQN P   +   ++RQAFIA PG  ++ ADY 
Sbjct: 647  INPRSGRVHTSYHQAITATGRLSSTEPNLQNIPIRTEQGRRVRQAFIARPGYKIVAADYS 706

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  + +L AF  G D H+ TA  ++ +I                      
Sbjct: 707  QIELRIMAHLSQDEGLLKAFSQGKDIHTATAAEVF-NIS--------------------- 744

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             L D    +RR AK +NF + YG +  GL++   VS  +A+  +DL++     VL + E 
Sbjct: 745  -LTDVTTEQRRNAKAINFGLIYGMSAFGLSKQLNVSRHDAQHYMDLYFERYPGVLKYMED 803

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             +  ++ + +V T+ GR    P I +    +R   ERAAIN P+QG+AAD+   AML++
Sbjct: 804  SRIVAKENGYVSTVFGRRLYLPEINASNGLRRKGAERAAINAPMQGTAADIIKKAMLKV 862


>gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 861

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 138/253 (54%), Gaps = 24/253 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            K+G++H   N I T+TGRLS+  PNLQN    +++  +IR+AF+A  G+ L+ ADY Q+E
Sbjct: 584  KDGKIHTIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEIRKAFVASEGHVLLSADYSQIE 643

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+AN + M+DAF  G D H++TAM ++    +AV+                    
Sbjct: 644  LRMLAHMANEEVMIDAFNHGIDIHTKTAMQIFDVEHDAVD-------------------- 683

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A+ RR AK +NF I YG++  GL+    ++ +EA   +D ++     +  + +    
Sbjct: 684  ---ANMRRSAKTVNFGIVYGQSDFGLSEQLGITRKEAHAFIDKYFASYPNIKNFMDTTIA 740

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
                  +V TL  R R    I       R   +RAA+N P+QGSAAD+   AM+ I K  
Sbjct: 741  FCEEHGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQGSAADLIKLAMIHIYKKM 800

Query: 1059 RLKELGWKLLLQV 1071
            + +++  +++LQ+
Sbjct: 801  QEEQVKSRMILQI 813


>gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1]
          Length = 833

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 151/297 (50%), Gaps = 31/297 (10%)

Query: 780  ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T Q A EA      + E+      +  L S ++ PL    V  + GR+H   N   T T
Sbjct: 513  STAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLP-RLVHPRTGRLHTRFNQTATAT 571

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       +IR+AF+A  G  L+ ADY Q+ELR+LAHL+  +++   
Sbjct: 572  GRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRV 631

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+ TA  M+                 G D    P L D     RR AK +NF 
Sbjct: 632  FREGKDIHTETAAWMF-----------------GLD----PALVDP--KMRRAAKTVNFG 668

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG +   L+++  +  +EA+  ++ ++    +V  W E   +E R   +V TL GR R
Sbjct: 669  VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              P + S  RS R   ER A N PVQG+AAD+   AM+++    RLK LG  LLLQV
Sbjct: 729  YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLF--PRLKPLGAHLLLQV 783


>gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1]
          Length = 833

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 151/297 (50%), Gaps = 31/297 (10%)

Query: 780  ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T Q A EA      + E+      +  L S ++ PL    V  + GR+H   N   T T
Sbjct: 513  STAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLP-RLVHPRTGRLHTRFNQTATAT 571

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       +IR+AF+A  G  L+ ADY Q+ELR+LAHL+  +++   
Sbjct: 572  GRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRV 631

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+ TA  M+                 G D    P L D     RR AK +NF 
Sbjct: 632  FREGKDIHTETAAWMF-----------------GLD----PALVDP--KMRRAAKTVNFG 668

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG +   L+++  +  +EA+  ++ ++    +V  W E   +E R   +V TL GR R
Sbjct: 669  VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              P + S  RS R   ER A N PVQG+AAD+   AM+++    RLK LG  LLLQV
Sbjct: 729  YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLF--PRLKPLGAHLLLQV 783


>gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
 gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
          Length = 830

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 149/293 (50%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L   +I PL  + V  K  R+H   N   T TGRLS
Sbjct: 515  AVLEALREAHPIVDRILQYRELSKLKGTYIDPLP-ALVHPKTNRLHTRFNQTATATGRLS 573

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G  L+V DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 574  SSDPNLQNIPVRTPLGQRIRRAFVAEEGWRLVVLDYSQIELRVLAHLSGDENLIRVFQEG 633

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV++                         RR AK +NF + YG
Sbjct: 634  QDIHTQTASWMFGVPPEAVDSLM-----------------------RRAAKTINFGVLYG 670

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+ +  +  EEA   ++ ++    +V  W E    E R   +V TL GR R  P 
Sbjct: 671  MSAHRLSGELAIPYEEAVAFIERYFQSYPKVRAWIEKTLAEGRERGYVETLFGRRRYVPD 730

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            + S  +S R   ER A N PVQG+AAD+   AM+++    RL+ELG ++LLQV
Sbjct: 731  LASRVKSIREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLQELGARMLLQV 781


>gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 897

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 133/256 (51%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V   +GR+H + +     TGRLS+  PNLQN P   +   +IRQAF+A  G  L+ ADY 
Sbjct: 617  VDPADGRIHTTFHQAGAATGRLSSSDPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYS 676

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH ++   +L AF+   D H+RTA   +                     PP  
Sbjct: 677  QIELRILAHYSDDPGLLQAFRDREDVHTRTAAETF-------------------GVPPEQ 717

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            +  D    +RR AK+LNF IAYG +  GL++   +   EA+  +D ++     V  + E 
Sbjct: 718  VTPD----QRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEW 773

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              +E+R      TL GRAR  P I +   + RN  ER AINTP+QG+AAD+   AM+ + 
Sbjct: 774  AVEEARAKGESRTLFGRARTMPEIGARNPALRNAAERTAINTPIQGTAADIVKIAMIRVH 833

Query: 1056 KNARLKELGWKLLLQV 1071
                 +    +LLLQV
Sbjct: 834  DALAQERRAARLLLQV 849


>gi|420146249|ref|ZP_14653679.1| DNA polymerase [Lactobacillus coryniformis subsp. coryniformis CECT
            5711]
 gi|398402065|gb|EJN55458.1| DNA polymerase [Lactobacillus coryniformis subsp. coryniformis CECT
            5711]
          Length = 888

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 155/292 (53%), Gaps = 32/292 (10%)

Query: 789  CDAISALCEVCSIDSLISNFILPLQGSNVSG-------KNGRVHCS-LNINTETGRLSAR 840
             + + A+  + S D L    +  LQ + + G        +G++H + L   T TGRLS+ 
Sbjct: 570  LEQLKAIAPIAS-DVLDYRGLTKLQSTYIDGLLKVIHPDDGKIHTTYLQTLTATGRLSSI 628

Query: 841  RPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
             PNLQN P  ++D  +IRQAF+    G  +  ADY Q+ELR+LAH+++ +++  AF  G 
Sbjct: 629  DPNLQNIPVRDEDGRQIRQAFVPRKAGWQIFAADYSQIELRVLAHISHDQNLQAAFSEGA 688

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H+ TAM ++             LE   E  P +          RR+AK +NF I YG 
Sbjct: 689  DIHASTAMRIFG------------LESAAEVTPNM----------RRQAKAVNFGIVYGI 726

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            +  GL+++  ++ ++AK  +D +++E   V  + E     ++   +V TL  R R  P I
Sbjct: 727  SDYGLSQNLGITRKQAKTYIDSYFHEYPNVKQYMEDIVAAAKKYGYVETLFHRRRYLPDI 786

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             S   + R+  ER A+NTP+QGSAAD+   AML + K  + ++L   +LLQV
Sbjct: 787  HSKNFNLRSFAERTAMNTPIQGSAADIIKVAMLNMQKALKEQQLQATMLLQV 838


>gi|350529887|ref|ZP_08908828.1| DNA polymerase I [Vibrio rotiferianus DAT722]
          Length = 930

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/262 (35%), Positives = 140/262 (53%), Gaps = 35/262 (13%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++   GRVH S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++  DY 
Sbjct: 649  INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPTGYKILAVDYS 708

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL++ +++LDAF+ G D H+ T          A E   V +E          
Sbjct: 709  QIELRIMAHLSDDQALLDAFRHGKDIHAAT----------AAEIMGVAIE---------- 748

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
               D  + +RR+AK +NF + YG +  GLA+   +   EA+  +D ++     V+ + E 
Sbjct: 749  ---DVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMED 805

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  +    +V T+ GR    P I+S    +R   ERAAIN P+QG+AAD+   AML + 
Sbjct: 806  TRSAASAQGYVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVD 865

Query: 1056 K------NARLKELGWKLLLQV 1071
            +      N R+     KLL+QV
Sbjct: 866  QWIQEEGNGRV-----KLLMQV 882


>gi|342162777|ref|YP_004767416.1| DNA polymerase I [Streptococcus pseudopneumoniae IS7493]
 gi|341932659|gb|AEL09556.1| DNA polymerase I [Streptococcus pseudopneumoniae IS7493]
          Length = 877

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 159/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P     +D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----EDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGAYQTKMLLQV 829


>gi|320527462|ref|ZP_08028643.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
 gi|320132175|gb|EFW24724.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
          Length = 876

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 149/282 (52%), Gaps = 26/282 (9%)

Query: 820  KNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            ++G++H   N + T+TGRLS+  PNLQN    ++   +IR+AF+   G  LI +DY Q+E
Sbjct: 599  QDGKIHTIYNQSATQTGRLSSSEPNLQNISVRDEQGKEIRKAFLPENGCVLISSDYHQIE 658

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+AN  S+++AFK G D H++TAM+++   ++ +                     
Sbjct: 659  LRMLAHMANETSLIEAFKEGIDIHTKTAMDVFHKPQDEIT-------------------- 698

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A +RR AK +NF I YG +  GL+    VS  EA   ++ +Y    ++  + +   K
Sbjct: 699  ---AQDRRSAKTVNFGIVYGISDFGLSEQLGVSRYEAHDFIERYYAAYPKIRIYMDQIVK 755

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            +     +V TL GR R  P I     + R   +RAA+N P+QGSAAD+   AM+ I +  
Sbjct: 756  DCEEKGYVETLCGRRREIPEIHDKNHATREFGKRAAMNAPIQGSAADLIKLAMIHIDQMM 815

Query: 1059 RLKELGWKLLLQVL--FFFSFSFFSIIVIVSCQGIVLANAMH 1098
            +  ++  K++LQV     F+     + V+       + NAMH
Sbjct: 816  KDAKVKSKMILQVHDELIFNVPKEEVDVMTKLINDGMVNAMH 857



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 108/295 (36%), Gaps = 84/295 (28%)

Query: 389 HGEVICFSIYSGPEADFGNGKSCIWVDLLDGG-GRDLLNEFAPFFEDPSIKKVWHNYSFD 447
           H  +  F++Y        NGK  +++ L+D     DLL  F+          + H Y FD
Sbjct: 337 HATINGFALY--------NGKQAVYISLVDAKKDSDLLAYFS--------SDMPHKYGFD 380

Query: 448 N----HVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQK 503
                H+ EN GL ++ FH D M  A L DSS           LT   K++         
Sbjct: 381 VKRNLHLAENEGLTLN-FHDDMMLAASLVDSS-----------LTTTAKIIER------- 421

Query: 504 DMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDS 563
                    GF   +S +D++G+                P +     + E    Y+   +
Sbjct: 422 --------YGFENTVSYEDVYGK----------------PTKPNLIIDEEKQCMYACAFA 457

Query: 564 INTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREY 623
            N  +LY  +  KL E  +K++            Y E   P   +L  ME EG+  D + 
Sbjct: 458 RNIFRLYAEITPKLQE--YKME----------KLYYEMEMPLTTVLYHMEREGIRCDIDI 505

Query: 624 LSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSK 676
           L  I     A+   A       A      AK  N+ S  QL ++LF   G P  K
Sbjct: 506 LDRIATETMAKISEAQKEIYVLA------AKEFNINSPKQLAEVLFDDLGLPTGK 554


>gi|301300333|ref|ZP_07206538.1| DNA-directed DNA polymerase [Lactobacillus salivarius
            ACS-116-V-Col5a]
 gi|300852069|gb|EFK79748.1| DNA-directed DNA polymerase [Lactobacillus salivarius
            ACS-116-V-Col5a]
          Length = 416

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 144/257 (56%), Gaps = 24/257 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            VS K+G+ H       T TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  +DY
Sbjct: 134  VSKKDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDY 193

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  K+M +AFK G D H+ TAM ++                   D P  
Sbjct: 194  SQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIF-----------------NVDSP-- 234

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                +   + RR+AK +NF I YG +  GL+++  +S ++AK+ +D + +    V  + E
Sbjct: 235  ---DEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYME 291

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + ++ + +V T+  R R  P IKS   + R+  ER A+N+P+QGSAAD+   AM+ +
Sbjct: 292  KIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINM 351

Query: 1055 SKNARLKELGWKLLLQV 1071
             +  + K L  K+LLQV
Sbjct: 352  QEMLKEKNLQAKMLLQV 368


>gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
 gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
          Length = 881

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 157/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 562  AVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + +++AF+
Sbjct: 622  SVDPNLQNIPIRLEQGRL-IRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDEHLIEAFR 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         ++LLQV
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALTDGNFKTRMLLQV 833


>gi|359446945|ref|ZP_09236573.1| DNA polymerase I [Pseudoalteromonas sp. BSi20439]
 gi|358039199|dbj|GAA72822.1| DNA polymerase I [Pseudoalteromonas sp. BSi20439]
          Length = 911

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 132/239 (55%), Gaps = 24/239 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ +  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  ++ ADY 
Sbjct: 630  VNEQTKRVHTSYHQAVTATGRLSSSDPNLQNIPIRSEEGRRIREAFIAADGYKIVAADYS 689

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +L+AF  G D HS TA  ++      VE                 
Sbjct: 690  QIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF-----GVE----------------- 727

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             L++  +  RRKAK +NF + YG +  GLAR   V   EA+  +D ++     VL + E 
Sbjct: 728  -LEEVTSDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPGVLEYMET 786

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+   AML +
Sbjct: 787  TREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIKKAMLTV 845


>gi|384531329|ref|YP_005715417.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
 gi|384538052|ref|YP_005722137.1| DNA polymerase I [Sinorhizobium meliloti SM11]
 gi|407722514|ref|YP_006842176.1| DNA polymerase I [Sinorhizobium meliloti Rm41]
 gi|433611964|ref|YP_007188762.1| DNA polymerase I [Sinorhizobium meliloti GR4]
 gi|333813505|gb|AEG06174.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
 gi|336034944|gb|AEH80876.1| DNA polymerase I [Sinorhizobium meliloti SM11]
 gi|407320746|emb|CCM69350.1| DNA polymerase I [Sinorhizobium meliloti Rm41]
 gi|429550154|gb|AGA05163.1| DNA polymerase I [Sinorhizobium meliloti GR4]
          Length = 1004

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 145/296 (48%), Gaps = 36/296 (12%)

Query: 823  RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH C     T TGRLS+  PNLQN P    +  KIR AF+A PG+ L+ ADY Q+ELR+
Sbjct: 726  RVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQIELRV 785

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  D  
Sbjct: 786  LAHVADIPQLRQAFADGVDIHAMTASEMF----------------------GVPV--DGM 821

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E  K  +
Sbjct: 822  PSEIRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFA 881

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I+S   S R   ERA+IN P+QGSAAD+   AM+++      
Sbjct: 882  RENGYVETIFGRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEA 941

Query: 1061 KELGWKLLLQVLFFFSFSF------FSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
             +L  ++LLQV     F         +I VI+S    V+ NA  P       L  D
Sbjct: 942  AKLSARMLLQVHDELIFEVEDGEIERTIPVIIS----VMENAAMPALDMRVPLKVD 993


>gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus
            MGCS10565]
          Length = 899

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +GR+H   L   T+TGRLS
Sbjct: 580  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRYLQDLTQTGRLS 639

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AFK
Sbjct: 640  SVDPNLQNIPIRLEQGRL-IRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFK 698

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D  A++RR AK +NF I 
Sbjct: 699  EGADIHTSTAMRVF-----------------GIEKP-----EDVTANDRRNAKAVNFGIV 736

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +  ++AK  +D ++     +  + E   +E++   +V TL  R R+ 
Sbjct: 737  YGISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETLFKRRRQL 796

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + +         K+LLQV
Sbjct: 797  PDINSRQFNLRSFAERTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQV 851


>gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 923

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 146/281 (51%), Gaps = 30/281 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            + E  S+  L S +   LPL    ++G+ GRVH S +  N  TGRLS+  PNLQN P   
Sbjct: 621  ILEHRSLTKLKSTYTDKLPLM---INGRTGRVHTSYHQANAATGRLSSSDPNLQNIPIRT 677

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
            ++  +IRQAF+A  G  ++ ADY Q+ELRI+AHL+  + +L AF  G D H  TA  ++ 
Sbjct: 678  EEGRRIRQAFVAPEGKRILAADYSQIELRIMAHLSQDEGLLRAFAEGKDIHRATAAEVF- 736

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
                A ET                      + +RR+AK +NF + YG +  GLAR   + 
Sbjct: 737  --DVAFET--------------------VTSEQRRRAKAVNFGLIYGMSAFGLARQLDIP 774

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
              EA+  +D ++     VL + E  +  +    +V TL GR    P I+     +R   E
Sbjct: 775  RNEAQSYIDTYFKRYPGVLKYMEETRAMASEQGYVSTLFGRRLYLPEIRDRNAMRRQAAE 834

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELG-WKLLLQV 1071
            RAAIN P+QG+AAD+   AM+ I    + +  G  ++++QV
Sbjct: 835  RAAINAPMQGTAADIIKKAMIAIQHWIKTETQGEIQMIMQV 875



 Score = 48.9 bits (115), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 127/323 (39%), Gaps = 78/323 (24%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDL-----L 425
           A DTE   +D  Q   V     + F+I +G  A    G          G    L     L
Sbjct: 347 AVDTETTSLDYMQAELVG----LSFAIEAGKAAYLPLGHDY------PGAPSQLPREATL 396

Query: 426 NEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGYS 483
            +  P  E+P IKKV  N  +D  VL N G+++ G   DTM  + +++S  SR    G +
Sbjct: 397 AKLKPLLENPDIKKVGQNLKYDMSVLANAGIQLKGVAFDTMLESYVFNSVASRHDMDGLA 456

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           L+ L G + +  E+                  GK + +  F +  L++          AP
Sbjct: 457 LKYL-GHKNISFEE----------------IAGKGAKQLTFNQIALEQ---------AAP 490

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
                         Y+A D+  TL+L++ L        W    K    +S+F    E   
Sbjct: 491 --------------YAAEDADITLRLHQHL--------WPRLSKEEGLESVF---TELEL 525

Query: 604 PFGEILVKMETEGMLVDREYLS-EIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
           P  E+L  +E  G+L+D   L  + E++AR      ++   + A  H    +  N+ S  
Sbjct: 526 PLIEVLSDIERRGVLIDSMLLGQQSEELAR-----KIDELEQHA--HEIAGEPFNLSSTK 578

Query: 663 QLRQLLFG--GKPNSKDDSESLP 683
           QL++L F   G P  K   +  P
Sbjct: 579 QLQELFFTKLGYPVIKKTPKGAP 601


>gi|436843155|ref|YP_007327533.1| DNA polymerase I [Desulfovibrio hydrothermalis AM13 = DSM 14728]
 gi|432172061|emb|CCO25434.1| DNA polymerase I [Desulfovibrio hydrothermalis AM13 = DSM 14728]
          Length = 889

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 159/304 (52%), Gaps = 29/304 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            KGA+++ N +        E    I+ + E   ++ L S ++ PL    + G +GR+H + 
Sbjct: 566  KGALSTANSVLEKLSGQHEI---ITDILEFRKMEKLRSTYLEPL--PKLVGPDGRIHTNF 620

Query: 829  N-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N + T TGRLS+  PNLQN P   +   ++R  F A  G  L  ADY Q+ELR+LAH + 
Sbjct: 621  NQLATATGRLSSSGPNLQNIPIRGEQGKRMRACFTAGEGMRLAAADYSQVELRVLAHFSG 680

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
              +++ AF+   D HSRTA  ++                   D+ P  + +D    ER  
Sbjct: 681  DPTLVSAFEQDEDIHSRTAALLF-------------------DRDPADITRD----ERGN 717

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF + YG  P  L+++  + + EAK+ +  ++ +   +  + ++  ++ R   +V 
Sbjct: 718  AKTINFGLIYGMGPQKLSQELGIKLNEAKEFIAKYFEKLGVLKEFYDSVVEQGRDKGYVT 777

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            TL GR R  P + S +    +   R AINT +QGSAAD+   AM++++ N  +K LG +L
Sbjct: 778  TLSGRRRLLPELHSKSPQIISQARRQAINTVIQGSAADIIKMAMIKVADNQEIKHLGGRL 837

Query: 1068 LLQV 1071
            +LQ+
Sbjct: 838  ILQI 841


>gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 144/256 (56%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++   GR+H + +   T TGRL++  PNLQN P    +   IR+AF+   G  LI ADY 
Sbjct: 569  INPATGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYVLIDADYS 628

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH++  + +++AFK   D HS+TA  ++      V+  QV            P
Sbjct: 629  QIELRILAHISEDERLINAFKNNLDIHSQTAAEIF-----GVDISQV-----------TP 672

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            ++       R +AK +NF I YG +  GL+RD K+S +EA + ++ ++ +  +V  + + 
Sbjct: 673  IM-------RSQAKAVNFGIVYGISDYGLSRDIKISRKEAAEFINRYFEKYPKVKEYLDN 725

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              K +R +  V T+  R R    IKS  ++ RN+ ER A+N+P+QGSAAD+   AM+ + 
Sbjct: 726  VVKFARENGFVLTIFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRVY 785

Query: 1056 KNARLKELGWKLLLQV 1071
            K  +   L  +++LQV
Sbjct: 786  KKLKENNLKSRIILQV 801


>gi|381202279|ref|ZP_09909394.1| DNA polymerase I [Sphingobium yanoikuyae XLDN2-5]
          Length = 932

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 164/329 (49%), Gaps = 40/329 (12%)

Query: 793  SALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQ 847
            SA+C +      +  L S +   LQ   ++   GRVH S ++   +TGRLS+  PNLQN 
Sbjct: 624  SAICGLVLEWRQLSKLKSTYTDALQ-QQINRDTGRVHTSYSLTGAQTGRLSSTDPNLQNI 682

Query: 848  PALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
            P   +   +IR AF+A PGN ++ ADY Q+ELR+ AH+A+  ++ DAF+ G D H+RTAM
Sbjct: 683  PIRTEIGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKDAFEQGEDIHNRTAM 742

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++  +                               R +AK +NF+I YG +  GLA  
Sbjct: 743  ELFGEVNR---------------------------DTRGRAKTINFAILYGISRWGLAGR 775

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
             ++S +EA+  +  +Y     +  +     +++R +    TL GR   FP IK+  + +R
Sbjct: 776  LEISADEAQDMISRYYERFPGISVYINETLEKARANGFTETLFGRKTWFPRIKAAIQHER 835

Query: 1028 NHIERAAINTPVQGSAADV---AMCAMLEISKNARLKELGWKLLLQVLFFFSFSFFSIIV 1084
               ERAAIN P+QG++AD+   AM  M    + A L  +  ++LLQV     F      V
Sbjct: 836  QGAERAAINAPIQGTSADIIKRAMARMGPALEAAGLPRV--RMLLQVHDELVFELPEADV 893

Query: 1085 IVSCQGI--VLANAMHPMFGKSSRLHYDV 1111
              + + I  V+ +A  PM   S  L  ++
Sbjct: 894  EAASKVIRQVMESAAEPMVSLSVPLGVEI 922


>gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568]
 gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568]
          Length = 934

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/246 (38%), Positives = 133/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA  G  
Sbjct: 649  LPLMINPVSG---RVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPEGYR 705

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  + +L AF AG D H  TA  ++                  
Sbjct: 706  IVAADYSQIELRIMAHLSQDEGLLKAFAAGEDIHRATAAEVFG----------------- 748

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 +PL K     +RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 749  -----LPLDK-VTNEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPG 802

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++    +V TL GR    P + S    +R   ERAAIN P+QG+AAD+  
Sbjct: 803  VLEYMERTRQQAASQGYVSTLDGRRLYLPDVSSSNGMRRKAAERAAINAPMQGTAADIIK 862

Query: 1049 CAMLEI 1054
             AM+E+
Sbjct: 863  RAMIEV 868


>gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
 gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
          Length = 954

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/295 (35%), Positives = 151/295 (51%), Gaps = 33/295 (11%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   E+ A+        L E   +  L S +   LP     ++ + GRVH 
Sbjct: 630  KGAPSTNEEVL--EELAQMGHQVPVLLMEHRGLSKLKSTYTDKLP---QMINAQTGRVHT 684

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   +   +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 685  SYHQAVTATGRLSSSDPNLQNIPIRNEQGRRIRQAFIARDGYVILAADYSQIELRIMAHL 744

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASE- 944
            AN  +M+ AF  G D H  TA  ++                       VPL  +A  SE 
Sbjct: 745  ANDANMIKAFAEGKDIHRSTAAEIF----------------------GVPL--EAVTSEQ 780

Query: 945  RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDN 1004
            RR AK +NF + YG +  GLA    +S  +AKK ++L++     V  +    ++++    
Sbjct: 781  RRSAKAINFGLIYGMSEFGLANQLGISRTDAKKYMELYFQRYPAVQQFMLDIREKAAEKG 840

Query: 1005 HVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +V TL GR    P I S  + +R   ER AIN P+QG+AAD+   AM+ I +  R
Sbjct: 841  YVETLFGRRLYLPEINSSNQMRRKAAERVAINAPMQGTAADIIKVAMIGIDQAVR 895


>gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021]
 gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021]
          Length = 1004

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 145/296 (48%), Gaps = 36/296 (12%)

Query: 823  RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH C     T TGRLS+  PNLQN P    +  KIR AF+A PG+ L+ ADY Q+ELR+
Sbjct: 726  RVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQIELRV 785

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  D  
Sbjct: 786  LAHVADIPQLRQAFADGVDIHAMTASEMF----------------------GVPV--DGM 821

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E  K  +
Sbjct: 822  PSEIRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFA 881

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I+S   S R   ERA+IN P+QGSAAD+   AM+++      
Sbjct: 882  RENGYVETIFGRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEA 941

Query: 1061 KELGWKLLLQVLFFFSFSF------FSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
             +L  ++LLQV     F         +I VI+S    V+ NA  P       L  D
Sbjct: 942  AKLSARMLLQVHDELIFEVEDGEIERTIPVIIS----VMENAAMPALDMRVPLKVD 993



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 104/265 (39%), Gaps = 68/265 (25%)

Query: 415 DLLDGG-------GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMH 467
           DLL GG       GR+ L+      EDPS+ KV  N  +   V++ +G+ +  F  DTM 
Sbjct: 458 DLLGGGPVDSQVPGRETLSRLKELLEDPSVLKVGQNLKYGYLVMKRHGIAMRSFD-DTML 516

Query: 468 MARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK--ISMKDIFG 525
           M+ + D+     G + +++L                        E ++G   I+ KD+ G
Sbjct: 517 MSYVLDAG---NGAHGMDSLA-----------------------ERWLGHTPIAYKDVTG 550

Query: 526 RRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLD 585
                     G+ S      ++ +       +Y+A D+   L+L+  LK +L        
Sbjct: 551 ---------TGRSSLTFDFVDIDKA-----TAYAAEDADIALRLWHVLKPRL-------- 588

Query: 586 GKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKW 645
                 K +   Y+   +P   +L  ME  G+ VDR+ LS +         A  +   + 
Sbjct: 589 ----AAKGLTRVYERLERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRL 644

Query: 646 ASKHCPDAKYMNVGSDTQLRQLLFG 670
           A       +   +GS  QL  +LFG
Sbjct: 645 A------GETFTIGSPKQLGDILFG 663


>gi|336114638|ref|YP_004569405.1| DNA polymerase I [Bacillus coagulans 2-6]
 gi|335368068|gb|AEH54019.1| DNA polymerase I [Bacillus coagulans 2-6]
          Length = 888

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 152/268 (56%), Gaps = 31/268 (11%)

Query: 812  LQGSNVSG------KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAV 864
            LQ + + G      ++G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+  
Sbjct: 596  LQSTYIEGLLKVVHRDGKVHTRFNQALTQTGRLSSTDPNLQNIPIRMEEGRKIRQAFVPS 655

Query: 865  PGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
                LI + DY Q+ELR+LAH++  + +++AF+ G D H++TAM ++ H++    T ++ 
Sbjct: 656  EEGWLIFSSDYSQVELRVLAHISGDEKLIEAFREGMDIHTKTAMEVF-HVKAEEVTPEM- 713

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                                 RR+AK +NF I YG +  GL+++  ++ +EA + +  ++
Sbjct: 714  ---------------------RRQAKAVNFGIVYGISDYGLSQNLGITRKEAGEFIKRYF 752

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSA 1043
                 V  + +   +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSA
Sbjct: 753  ASYPRVKEYMDETVREAKQKGYVSTLLKRRRYLPEISSRNFNLRSFAERTAMNTPIQGSA 812

Query: 1044 ADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AD+   AM++++K  + ++L  +LLLQV
Sbjct: 813  ADIIKKAMIDMAKRLKKEKLRARLLLQV 840


>gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1]
          Length = 831

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 149/293 (50%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L S +I PL G  V  + GR+H   N   T TGRLS
Sbjct: 516  AVLEALREAHPIVEKILQHRELSKLKSTYIDPLPGL-VHPRTGRLHTRFNQTATATGRLS 574

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G  L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 575  SSDPNLQNIPVRTPLGQRIRKAFVAEEGFLLVALDYSQIELRVLAHLSGDENLIRVFREG 634

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                          RR AK +NF + YG
Sbjct: 635  KDIHTQTASWMFGVPLEAVDPRM-----------------------RRAAKTVNFGVLYG 671

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +  R   +V TL GR R  P 
Sbjct: 672  MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEGGRQRGYVETLFGRRRYVPD 731

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            + +  +S R   ER A N PVQG+AAD+   AM+++    RLKE G ++LLQV
Sbjct: 732  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLKETGARMLLQV 782


>gi|334318202|ref|YP_004550821.1| DNA polymerase I [Sinorhizobium meliloti AK83]
 gi|418402693|ref|ZP_12976200.1| DNA polymerase I [Sinorhizobium meliloti CCNWSX0020]
 gi|334097196|gb|AEG55207.1| DNA polymerase I [Sinorhizobium meliloti AK83]
 gi|359503350|gb|EHK75905.1| DNA polymerase I [Sinorhizobium meliloti CCNWSX0020]
          Length = 1004

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 145/296 (48%), Gaps = 36/296 (12%)

Query: 823  RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH C     T TGRLS+  PNLQN P    +  KIR AF+A PG+ L+ ADY Q+ELR+
Sbjct: 726  RVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQIELRV 785

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  D  
Sbjct: 786  LAHVADIPQLRQAFADGVDIHAMTASEMF----------------------GVPV--DGM 821

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E  K  +
Sbjct: 822  PSEIRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFA 881

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R + +V T+ GR   +P I+S   S R   ERA+IN P+QGSAAD+   AM+++      
Sbjct: 882  RENGYVETIFGRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEA 941

Query: 1061 KELGWKLLLQVLFFFSFSF------FSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
             +L  ++LLQV     F         +I VI+S    V+ NA  P       L  D
Sbjct: 942  AKLSARMLLQVHDELIFEVEDGEIERTIPVIIS----VMENAAMPALDMRVPLKVD 993


>gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165]
 gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165]
          Length = 954

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/295 (35%), Positives = 151/295 (51%), Gaps = 33/295 (11%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   E+ A+        L E   +  L S +   LP     ++ + GRVH 
Sbjct: 630  KGAPSTNEEVL--EELAQMGHQVPVLLMEHRGLSKLKSTYTDKLP---QMINAQTGRVHT 684

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   +   +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 685  SYHQAVTATGRLSSSDPNLQNIPIRNEQGRRIRQAFIARDGYVILAADYSQIELRIMAHL 744

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASE- 944
            AN  +M+ AF  G D H  TA  ++                       VPL  +A  SE 
Sbjct: 745  ANDANMIKAFAEGKDIHRSTAAEIF----------------------GVPL--EAVTSEQ 780

Query: 945  RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDN 1004
            RR AK +NF + YG +  GLA    +S  +AKK ++L++     V  +    ++++    
Sbjct: 781  RRSAKAINFGLIYGMSEFGLANQLGISRTDAKKYMELYFQRYPAVQQFMLDIREKAAEKG 840

Query: 1005 HVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            +V TL GR    P I S  + +R   ER AIN P+QG+AAD+   AM+ I +  R
Sbjct: 841  YVETLFGRRLYLPEINSSNQMRRKAAERVAINAPMQGTAADIIKVAMIGIDQAVR 895



 Score = 46.2 bits (108), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 127/353 (35%), Gaps = 94/353 (26%)

Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSG-----PEADFGNGKSCIW 413
           W+   +   LV A DTE   +D  Q   V     I F + +G     P A  G       
Sbjct: 347 WLAKLQMAELV-AVDTETDNLDAMQANLVG----ISFGLENGEACYIPLAHKGKIAQPTQ 401

Query: 414 VDLLDGGGRDL----------------LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLK 457
           VDL      +L                L +  P  E+P+I+K+  N  +D  +   YG++
Sbjct: 402 VDLFGESEAELDEVEALLPNQLNKADCLAQLKPILENPNIRKIGQNIKYDLTIFARYGIE 461

Query: 458 VSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGK 517
           + G   DTM  +   DS+ R       E   G + +  E+                  GK
Sbjct: 462 LQGVAFDTMLQSYTLDSTGRHNMDNLAERYLGHQTIPFEE----------------LAGK 505

Query: 518 ISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKL 577
                  G+ +L  D                + E +    Y+  D+  T+KL++ L    
Sbjct: 506 -------GKHQLTFD----------------QIELDKATEYAGEDAEITMKLHQLL---- 538

Query: 578 LEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVAR 632
               W +L   P     +   +++   P   +L ++E  G+L+D   L     EIE+  +
Sbjct: 539 ----WSELQKTP----ELVKLFEQIEMPLVSVLSRVERNGVLIDPAKLLAHSVEIEQRLK 590

Query: 633 AEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG--GKPNSKDDSESLP 683
            E E  V         H    +  N+ S  QL+++LF   G P  K   +  P
Sbjct: 591 -ELETLV---------HQEAGEVFNLASTKQLQEILFNKLGLPILKKTPKGAP 633


>gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2]
          Length = 833

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 151/297 (50%), Gaps = 31/297 (10%)

Query: 780  ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
            +T Q A EA      + E+      +  L S ++ PL    V  + GR+H   N   T T
Sbjct: 513  STAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLP-RLVHPRTGRLHTRFNQTATAT 571

Query: 835  GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
            GRLS+  PNLQN P       +IR+AF+A  G  L+ ADY Q+ELR+LAHL+  +++   
Sbjct: 572  GRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRV 631

Query: 895  FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
            F+ G D H+ TA  M+                 G D    P L D     RR AK +NF 
Sbjct: 632  FREGKDIHTETAAWMF-----------------GLD----PALVDQ--KMRRAAKTVNFG 668

Query: 955  IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
            + YG +   L+++  +  +EA+  ++ ++    +V  W E   +E R   +V TL GR R
Sbjct: 669  VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              P + S  RS R   ER A N PVQG+AAD+   AM+++    RLK LG  LLLQV
Sbjct: 729  YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLF--PRLKPLGAHLLLQV 783


>gi|295425309|ref|ZP_06818012.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664]
 gi|295065085|gb|EFG55990.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664]
          Length = 887

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 152/282 (53%), Gaps = 26/282 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPAL 850
            +S + +   I  + S ++  L   +V   +GRVH   L   T TGRLS+  PNLQN P  
Sbjct: 582  VSEILDYRQIAKIQSTYVKGLL--DVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTR 639

Query: 851  EKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF+ + P   +   DY Q+ELR+LAH++  ++M +AFK G D HS TAM +
Sbjct: 640  TEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKI 699

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            + H+                D P     KD     RR AK +NF I YG +  GL+++  
Sbjct: 700  F-HL----------------DSP-----KDVTPLMRRHAKAVNFGIVYGISDYGLSKNLG 737

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            +S + AK+ +D ++ +  ++  + +   +E+R   +  T++ R R  P I +   + R+ 
Sbjct: 738  ISRKRAKEFIDNYFEQYPQIRDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKNFNVRSF 797

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             ER AIN+P+QGSAAD+   AM+ + K      L  K++LQV
Sbjct: 798  AERTAINSPIQGSAADIIKIAMINMQKKLEEMHLKTKMVLQV 839


>gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
 gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
          Length = 918

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/248 (37%), Positives = 129/248 (52%), Gaps = 27/248 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH S +  N  TGRLS+  PNLQN P   ++  +IR AFIA  G  
Sbjct: 633  LPLM---VNAKTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGKK 689

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++    + V + Q       
Sbjct: 690  ILAADYSQIELRIMAHLSQDTGLLTAFAEGKDIHKATAAEVFDVDFSEVTSDQ------- 742

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR+AK +NF + YG +  GLA+   +   EA+  +D ++     
Sbjct: 743  ----------------RRRAKAVNFGLIYGMSAFGLAKQLDIPRAEAQSYIDTYFKRYPG 786

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +  +    +V TL GR    PAIK     +R   ERAAIN P+QG+AAD+  
Sbjct: 787  VLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIK 846

Query: 1049 CAMLEISK 1056
             AM+ I++
Sbjct: 847  KAMINIAQ 854


>gi|443491266|ref|YP_007369413.1| DNA polymerase I PolA [Mycobacterium liflandii 128FXT]
 gi|442583763|gb|AGC62906.1| DNA polymerase I PolA [Mycobacterium liflandii 128FXT]
          Length = 899

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/258 (36%), Positives = 137/258 (53%), Gaps = 25/258 (9%)

Query: 816  NVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVAD 873
            N    NGR+H + N     TGRLS+  PNLQN P       +IR AF+   G S L+ AD
Sbjct: 616  NSVADNGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRQIRDAFVVGDGYSELMTAD 675

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+E+RI+AHL+  + +++AF  G D HS  A   +         G  + E  GE    
Sbjct: 676  YSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAF---------GVPIDEVTGE---- 722

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                       RR+ K +++ +AYG +  GL+   K+S E+AK  +D +++    V  + 
Sbjct: 723  ----------LRRRVKAMSYGLAYGLSAYGLSSQLKISTEDAKVQMDQYFSRFGGVRDYL 772

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
             A  +++R D +  T+LGR R  P + S  R  R   ERAA+N P+QGSAAD+   AM+E
Sbjct: 773  MAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIE 832

Query: 1054 ISKNARLKELGWKLLLQV 1071
            + K  +   L  ++LLQV
Sbjct: 833  VDKALKEHALKSRMLLQV 850


>gi|386360445|ref|YP_006058690.1| DNA polymerase I [Thermus thermophilus JL-18]
 gi|383509472|gb|AFH38904.1| DNA polymerase I [Thermus thermophilus JL-18]
          Length = 831

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 153/293 (52%), Gaps = 27/293 (9%)

Query: 780  ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
            A  +  REA   +  + +   +  L + ++ PL  S V    GR+H   N   T TGRLS
Sbjct: 516  AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPSTGRLHTRFNQTATATGRLS 574

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
            +  PNLQN P       +IR+AF+A  G +L+  DY Q+ELR+LAHL+  ++++  F+ G
Sbjct: 575  SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 634

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H++TA  M+     AV+                PL+       RR AK +NF + YG
Sbjct: 635  KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 671

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +   L+++  +  EEA   ++ ++    +V  W E   +E R   +V TL GR R  P 
Sbjct: 672  MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 731

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            + +  +S R   ER A N PVQG+AAD+   AM+++    RL E+G ++LLQV
Sbjct: 732  LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLPEVGARMLLQV 782


>gi|373460588|ref|ZP_09552339.1| DNA polymerase I [Prevotella maculosa OT 289]
 gi|371955206|gb|EHO73010.1| DNA polymerase I [Prevotella maculosa OT 289]
          Length = 920

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 158/312 (50%), Gaps = 28/312 (8%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
            G   +N ++    Q  R     ++ + +   +  L+  ++  L    ++ + G +H S N
Sbjct: 597  GQYVTNEEVL---QSLRTKHPIVADILDYRGLKKLLGTYVDALP-KLINKRTGHIHTSFN 652

Query: 830  -INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
               T TGRLS+  PNLQN P   +D  +IR+ FIA        ADY Q+ELRI+AHL+  
Sbjct: 653  QALTSTGRLSSSDPNLQNIPVRSEDGKEIRKCFIAEQDCLFFSADYSQIELRIMAHLSED 712

Query: 889  KSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKA 948
             +M++AF+ G D H+ TA  +  H +                      ++D  A+ER++A
Sbjct: 713  ANMIEAFREGFDIHAATAAKI-KHKK----------------------MEDVSAAERKQA 749

Query: 949  KMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHT 1008
            K  NF I YG T  GLA+   +   EA+K ++ ++    +V  + E  K+++R   +  T
Sbjct: 750  KQANFGIIYGITTYGLAQRMGIDNNEARKLIEDYFATFPKVRAFMEQAKEQARRKGYAET 809

Query: 1009 LLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLL 1068
            L GR R  P I S   + R   ER AIN P+QGS AD+   AM+ I +  + + +  K++
Sbjct: 810  LFGRRRYLPDILSKNGTVRGFAERNAINAPIQGSEADIIKLAMIRIWRRFKAENIRSKMI 869

Query: 1069 LQVLFFFSFSFF 1080
            LQV    +FS +
Sbjct: 870  LQVHDELNFSVY 881



 Score = 48.1 bits (113), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 28/164 (17%)

Query: 307 NPKNDA-AEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKY 365
           NP+ D  A      + +SEN + E ++ ++        +  ++DN   A+K+      K 
Sbjct: 296 NPQLDLFAVNPTDGQVSSENTSFESIKTVKH-------DYKLIDNQDEARKLCDFFRTKQ 348

Query: 366 KHLVHACDTEVAKIDVKQETPVDHGEV-ICFSIYSGPEADFGNGKSCIWVDLLDGGGRDL 424
              V + DTE   +     +P+D   V +CF++               +V + +     L
Sbjct: 349 ---VLSLDTETTSL-----SPIDAELVGLCFAV---------EAHQAFYVAIPNDREEAL 391

Query: 425 --LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
             +N F P +EDPSI K+  N  +D  VL NYG+ + G   DTM
Sbjct: 392 QYVNIFKPIYEDPSILKIGQNIKYDYMVLMNYGVTLQGKMFDTM 435


>gi|325570069|ref|ZP_08145994.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC 12755]
 gi|325156897|gb|EGC69068.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC 12755]
          Length = 881

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 158/294 (53%), Gaps = 32/294 (10%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLKEQAPIVEDILTYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P   ++  KIR+AF+    + +I + DY Q+ELR+LAH+++   + +AF  
Sbjct: 622  SVDPNLQNIPIRLEEGRKIREAFVPRETDWVIYSSDYSQIELRVLAHISDDTHLKEAFIE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHSSTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  ++ + A++ +D ++ +   V T+ E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             I S   + R   ER AINTP+QGSAAD+   AM++++K  + ++L   +LLQV
Sbjct: 780  DINSRNFNIRTFAERTAINTPIQGSAADILKIAMIDLAKRLKEEKLAATMLLQV 833


>gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 878

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 158/288 (54%), Gaps = 29/288 (10%)

Query: 787  EACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQ 845
            +A   I ++ E  ++  L S +I  L+ +  S  +G+VH   N   T+TGRLS+  PNLQ
Sbjct: 569  DAHPIIKSIMEYRTLTKLYSTYIEGLKKACYS--DGKVHTIFNQALTQTGRLSSIEPNLQ 626

Query: 846  NQPA-LEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
            N P  LE+ R  IR+AF+ +  G  ++ ADY Q+ELRILAH++N +S+++AFK G D H 
Sbjct: 627  NIPIRLEEGRL-IRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAFKEGEDIHK 685

Query: 904  RTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVG 963
            +TAM+++          +V  E    D              RR AK +NF I YG +  G
Sbjct: 686  KTAMDVF----------KVSEEEMTSDL-------------RRSAKAINFGIIYGMSAFG 722

Query: 964  LARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLT 1023
            L+ +  ++ +EAKK +D +      +  + E   K+++   +  TL  R R  P +    
Sbjct: 723  LSENLNITQKEAKKYIDHYLKTYSGINQYMEDTVKDAKFHGYATTLFNRRRYIPELSQKN 782

Query: 1024 RSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             + R   ER A+N P+QG+AAD+   AM++++   + K++  +LLLQV
Sbjct: 783  YALRQFGERTAMNAPIQGTAADIIKKAMIDVANAMKEKQVKSRLLLQV 830


>gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
 gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
          Length = 886

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +GR+H   L   T+TGRLS
Sbjct: 567  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRYLQDLTQTGRLS 626

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AFK
Sbjct: 627  SVDPNLQNIPIRLEQGRL-IRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFK 685

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D  A++RR AK +NF I 
Sbjct: 686  EGADIHTSTAMRVF-----------------GIEKP-----EDVTANDRRNAKAVNFGIV 723

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +  ++AK  +D ++     +  + E   +E++   +V TL  R R+ 
Sbjct: 724  YGISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETLFKRRRQL 783

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + +         K+LLQV
Sbjct: 784  PDINSRQFNVRSFAERTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQV 838


>gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
            18228]
 gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
            18228]
          Length = 932

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 153/309 (49%), Gaps = 33/309 (10%)

Query: 779  FATEQEAREAC----DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNIN- 831
            + T +E  E+     + +  + E   +  L+  +I  LP     ++ + GR+H S N   
Sbjct: 611  YVTSEEVLESLRGKHEVVGKILEHRGLKKLLGTYIDALP---QLINPETGRIHTSFNQTV 667

Query: 832  TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891
            T TGRLS+  PNLQN P   +D  +IR+AFI   G     ADY Q+ELRI+AHL+    M
Sbjct: 668  TATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCIFFSADYSQIELRIMAHLSGDPHM 727

Query: 892  LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKML 951
            ++AF+ G D H+ TA  +Y                       VPL ++    +R KAK  
Sbjct: 728  IEAFQKGQDIHAATASKIYK----------------------VPL-EEVTREQRSKAKTA 764

Query: 952  NFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLG 1011
            NF I YG +  GLA    V  +EAK+ +D ++     V  + +   + +R   ++ T+  
Sbjct: 765  NFGIIYGISVFGLAERLNVDRKEAKELIDGYFENYPHVKEYMDESIRIARERGYIETIFK 824

Query: 1012 RARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R R  P I S     R + ER AIN P+QGSAAD+   AM+ I +    + +  K++LQV
Sbjct: 825  RKRYLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMVRIYQRFLKERIQSKMILQV 884

Query: 1072 LFFFSFSFF 1080
                +FS  
Sbjct: 885  HDELNFSVL 893



 Score = 47.0 bits (110), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 115/295 (38%), Gaps = 67/295 (22%)

Query: 335 RSKLASFYS---NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGE 391
           ++ LA+ ++   N  +VDN    +K+  +L N     V + DTE    D     P+   E
Sbjct: 327 KTNLATLHTLNCNYQLVDN---EEKLSQLLQNIVTQSVLSLDTETTSTD-----PI-RAE 377

Query: 392 VICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVL 451
           ++  S +S  E    N    + V       + +++ F P FE+  I KV  N  +D  VL
Sbjct: 378 LVGMS-FSYAE----NQAFYVPVPADRSEAQKIVDRFRPVFENREIMKVGQNIKYDMLVL 432

Query: 452 ENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTD 511
            NYG+++ G   DTM    +     R    Y           ++E    YQ         
Sbjct: 433 ANYGVQLQGPLFDTMVAHYVLQPELRHNMDY-----------LAEIYLNYQ--------- 472

Query: 512 EGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYK 571
                 I ++++ G     K  + G +  + P    +         Y+  D+  TLKL  
Sbjct: 473 -----TIHIEELIG----PKGKNQGNMRDLPPASVYE---------YACEDADVTLKLKN 514

Query: 572 SLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSE 626
            L+K+L E + +              ++E   P   +L  ME  G+ +D E L E
Sbjct: 515 KLEKELDENNVR------------KLFEEIEMPLIPVLAYMERNGVRIDTEALKE 557


>gi|385816115|ref|YP_005852506.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038]
 gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 886

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 160/292 (54%), Gaps = 29/292 (9%)

Query: 784  EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRP 842
            + +E    +S + E   I  + S ++  L    +  ++GR+H   L   T TGRLS+  P
Sbjct: 572  QLKEQSPVVSDILEYRQISKIQSTYVKGLLDV-IDERDGRIHTRYLQTLTATGRLSSVDP 630

Query: 843  NLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            NLQN P   ++  +IR+AF+ + P   +   DY Q+ELR+LAH++   +M +AFK G D 
Sbjct: 631  NLQNIPTRTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDI 690

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TAM ++ H+ +  E   +                     +RR+AK +NF I YG + 
Sbjct: 691  HAHTAMKIF-HLSSVDEVTSL---------------------QRRRAKAVNFGIVYGISD 728

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GL+++  +S ++AK+ +D ++++   +  + +   K++R   +  T++ R R  P I +
Sbjct: 729  YGLSKNLDISRKQAKEFIDEYFDQYPGIQAYMDWAVKDAREKGYAETIMHRRRYLPDIHA 788

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
               + R+  ER AIN+P+QGSAAD+   AM+ + K  +L ELG   K+++QV
Sbjct: 789  KNFNVRSFAERTAINSPIQGSAADIMKIAMINMQK--KLDELGLKTKMVVQV 838


>gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
            exonuclease [Photobacterium leiognathi subsp.
            mandapamensis svers.1.1.]
 gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
            exonuclease [Photobacterium leiognathi subsp.
            mandapamensis svers.1.1.]
          Length = 923

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 24/239 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+   GRVH S +   T TGRLS+  PNLQN P   ++  +IRQAF+A  G  ++  DY 
Sbjct: 642  VNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYS 701

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K++LDAF+ G D H+ TA                  E  G D     
Sbjct: 702  QIELRIMAHLSGDKALLDAFRHGKDIHAATAA-----------------EILGLD----- 739

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             ++   + +RR+AK +NF + YG +  GLA+   +   EA+  +++++     VL + E+
Sbjct: 740  -IEQVSSEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQDYMNVYFERYPGVLEYMES 798

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             +  +    +V TL GR    P IKS    +R   ERAAIN P+QG+AAD+   AM+ +
Sbjct: 799  TRNTASEKGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPMQGTAADIIKLAMIAV 857


>gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301]
 gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301]
          Length = 892

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/250 (37%), Positives = 133/250 (53%), Gaps = 24/250 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S +   T TGRLS+  PNLQN P    +  +IR+AFIA PG +LI ADY Q+ELR+
Sbjct: 618  RVHTSFSQAITTTGRLSSNEPNLQNIPIRTSEGARIRRAFIAAPGKALISADYSQIELRL 677

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+  ++ ++F  G D H+RTA  ++             L   G D    P++    
Sbjct: 678  LAHVADIPALKESFAKGEDIHARTAAEVFG------------LPMEGMD----PMV---- 717

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLAR   +   EAK+ +D ++    E+  +     + +R
Sbjct: 718  ---RRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARYPEIRRYMNETAEFAR 774

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T  GR    P I     ++R + ER AIN P+QG AAD+   AM+ +    R  
Sbjct: 775  THGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADIIKRAMVRLPAAIRDA 834

Query: 1062 ELGWKLLLQV 1071
             L   +LLQV
Sbjct: 835  GLDAVMLLQV 844



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 18/133 (13%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDL-----L 425
           A DTE   ++ +      H +++  S+ + P      G++  ++ L    G  L     L
Sbjct: 320 AIDTETTGLNPR------HAKLVGISVATAP------GRAA-YIPLGHEDGPQLPRPLAL 366

Query: 426 NEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLE 485
              AP   DPSI K++HN  FD HVLE  GL  +    DTM M+    + R   G   L 
Sbjct: 367 ERLAPVLADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELS 426

Query: 486 ALTGDRKVMSEDK 498
           AL  D + +S D+
Sbjct: 427 ALHLDHRPISYDE 439


>gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319]
 gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319]
          Length = 875

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 155/284 (54%), Gaps = 26/284 (9%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQP 848
            D I  + +   +  L S +I  L+   +   +G+VH   N   T+TGRLS+  PNLQN P
Sbjct: 568  DIIPEILQYRQLGKLQSTYIEGLK-KVIHESDGKVHTRFNQTLTQTGRLSSVDPNLQNIP 626

Query: 849  ALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
               ++  KIR AF+ + PG  +  ADY Q+ELR+LAH+A+ + ++DAFK   D H++TAM
Sbjct: 627  IRLEEGKKIRGAFVPSQPGWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAM 686

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
            +++ H+                        ++  A+ RR+AK +NF I YG +  GL++ 
Sbjct: 687  DVF-HVER----------------------EEVTANMRRQAKAVNFGIVYGISDYGLSQS 723

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ + A   ++ +      V  + +   ++++   +V TLL R R  P I S   + R
Sbjct: 724  LGITRKAAATFIERYLKSFPGVQEYMDTIVRDAKEKGYVTTLLHRRRYLPEITSRNFNLR 783

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +  ER A+NTP+QG+AAD+   AM+E+ K  + + L  KLLLQV
Sbjct: 784  SFAERTAMNTPIQGTAADIIKKAMIEMDKRLKDENLQAKLLLQV 827


>gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
 gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
          Length = 872

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 152/282 (53%), Gaps = 26/282 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            I  L     +  L+S ++L L    ++   GR+H   N + T TGRLS+  PNLQN P  
Sbjct: 567  IETLISYRQLSKLLSTYLLGLH-PLINPATGRIHTHFNQMATVTGRLSSTEPNLQNIPTR 625

Query: 851  EKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             +   ++R+ F+   G  L+++ DY Q+ELR++A +A  + +LD+F+ G D H+RTA  +
Sbjct: 626  TEVGKRMREMFVPGEGYDLLMSCDYSQVELRVMASIAQDELLLDSFRHGQDVHARTASEI 685

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +      V   QV            P +       R KAK +NF I YG +  GLAR   
Sbjct: 686  F-----GVPLDQV-----------TPYM-------RSKAKTVNFGIIYGISDFGLARQLG 722

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            V   EA + ++ ++     V  + E  K+++R   +V TL GR R  P I +   ++R+ 
Sbjct: 723  VPRGEAAQYIESYFARYTGVKAYMEREKQKAREMGYVETLFGRRRYLPDINAKNFNRRSF 782

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             ER AINTP+QG+AAD+   AML++++N +   +  ++LLQV
Sbjct: 783  AERTAINTPIQGTAADIIKVAMLKVARNLKEARVKSRVLLQV 824


>gi|427406333|ref|ZP_18896538.1| DNA polymerase I [Selenomonas sp. F0473]
 gi|425709174|gb|EKU72213.1| DNA polymerase I [Selenomonas sp. F0473]
          Length = 890

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/262 (36%), Positives = 147/262 (56%), Gaps = 29/262 (11%)

Query: 814  GSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG---NSL 869
            G+ +  + GRVH S N + T TGRLS+  PNLQN P   ++   +R  F   PG   ++L
Sbjct: 606  GALIRPETGRVHTSFNQMVTATGRLSSSDPNLQNIPVRTEEGRAVRALF--EPGEGYDAL 663

Query: 870  IVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGE 929
            + ADY Q+ELRILAH++  ++++DAF  G D H+RTA              +VL    G 
Sbjct: 664  LSADYSQIELRILAHMSGDETLIDAFLHGQDIHARTA-------------SEVL----GV 706

Query: 930  DKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV 989
                   L +  +++RR AK +NF I YG +  GL++D  +S +EA   ++ ++   + V
Sbjct: 707  S------LAEVTSAQRRSAKAVNFGIVYGLSDYGLSQDLGISRKEAASYIERYFERYRGV 760

Query: 990  LTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMC 1049
              + +    ++  D +V TL GR R  PAI S    QR++ ER A+NTP+QG+AAD+   
Sbjct: 761  RAFLDKVVADAHRDGYVTTLYGRRRALPAINSRNFMQRSNAERMAMNTPIQGTAADLIKI 820

Query: 1050 AMLEISKNARLKELGWKLLLQV 1071
            AM+   +  R  +L  ++LLQV
Sbjct: 821  AMIRADEALRAAKLKSRILLQV 842


>gi|406658765|ref|ZP_11066905.1| DNA-directed DNA polymerase I [Streptococcus iniae 9117]
 gi|405578980|gb|EKB53094.1| DNA-directed DNA polymerase I [Streptococcus iniae 9117]
          Length = 880

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +G++H   +   T+TGRLS
Sbjct: 561  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMSDGKIHTRYVQDLTQTGRLS 620

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF A    SL+++ DY Q+ELR+LAH++  + ++ AF 
Sbjct: 621  SSDPNLQNIPVRLEQGRL-IRKAFTASKEGSLLLSSDYSQIELRVLAHISGDQHLIAAFN 679

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
               D H+ TAM ++                 G  KP     +D  A++RR AK +NF I 
Sbjct: 680  EDADIHTSTAMRVF-----------------GIAKP-----EDVTANDRRNAKAVNFGIV 717

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S ++AK  +D ++ +   + ++ +   +E++   +V TL  R R  
Sbjct: 718  YGISDFGLSNNLGISRKQAKDYIDTYFQQYPGIKSYMDTVVREAKDKGYVETLFKRRREL 777

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + K     +   ++LLQV
Sbjct: 778  PEINSRNFNIRSFAERTAINSPIQGSAADILKIAMINLDKALADGQFESRMLLQV 832


>gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
 gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
          Length = 878

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 158/288 (54%), Gaps = 29/288 (10%)

Query: 787  EACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQ 845
            +A   I ++ E  ++  L S +I  L+ +  S  +G+VH   N   T+TGRLS+  PNLQ
Sbjct: 569  DAHPIIKSIMEYRTLTKLYSTYIEGLKKACYS--DGKVHTIFNQALTQTGRLSSIEPNLQ 626

Query: 846  NQPA-LEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHS 903
            N P  LE+ R  IR+AF+ +  G  ++ ADY Q+ELRILAH++N +S+++AFK G D H 
Sbjct: 627  NIPIRLEEGRL-IRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAFKEGEDIHK 685

Query: 904  RTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVG 963
            +TAM+++          +V  E    D              RR AK +NF I YG +  G
Sbjct: 686  KTAMDVF----------KVSEEEMTSDL-------------RRSAKAINFGIIYGMSAFG 722

Query: 964  LARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLT 1023
            L+ +  ++ +EAKK +D +      +  + E   K+++   +  TL  R R  P +    
Sbjct: 723  LSENLNITQKEAKKYIDHYLETYSGINQYMEDTVKDAKFHGYATTLFNRRRYIPELSQKN 782

Query: 1024 RSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             + R   ER A+N P+QG+AAD+   AM++++   + K++  +LLLQV
Sbjct: 783  YALRQFGERTAMNAPIQGTAADIIKKAMIDVANAMKEKQVKSRLLLQV 830


>gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5]
 gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5]
          Length = 915

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/250 (37%), Positives = 133/250 (53%), Gaps = 24/250 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S +   T TGRLS+  PNLQN P    +  +IR+AFIA PG +LI ADY Q+ELR+
Sbjct: 641  RVHTSFSQAITTTGRLSSNEPNLQNIPIRTSEGARIRRAFIAAPGKALISADYSQIELRL 700

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+  ++ ++F  G D H+RTA  ++             L   G D    P++    
Sbjct: 701  LAHVADIPALKESFAKGEDIHARTAAEVFG------------LPMEGMD----PMV---- 740

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLAR   +   EAK+ +D ++    E+  +     + +R
Sbjct: 741  ---RRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARYPEIRRYMNETAEFAR 797

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T  GR    P I     ++R + ER AIN P+QG AAD+   AM+ +    R  
Sbjct: 798  THGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADIIKRAMVRLPAAIRDA 857

Query: 1062 ELGWKLLLQV 1071
             L   +LLQV
Sbjct: 858  GLDAVMLLQV 867



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 18/133 (13%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDL-----L 425
           A DTE   ++ +      H +++  S+ + P      G++  +V L    G  L     L
Sbjct: 343 AIDTETTGLNPR------HAKLVGISVATAP------GRAA-YVPLGHEDGPQLPRPLAL 389

Query: 426 NEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLE 485
              AP   DPSI K++HN  FD HVLE  GL  +    DTM M+    + R   G   L 
Sbjct: 390 ERLAPVLADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELS 449

Query: 486 ALTGDRKVMSEDK 498
           AL  D + +S D+
Sbjct: 450 ALHLDHRPISYDE 462


>gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
            serovar 9 str. CVJ13261]
 gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
            serovar 11 str. 56153]
 gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
            serovar 9 str. CVJ13261]
 gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
            serovar 11 str. 56153]
          Length = 957

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 155/306 (50%), Gaps = 32/306 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   ++ A +       L E   +  L S +   LPL    ++ K GRVH 
Sbjct: 633  KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INQKTGRVHT 687

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 688  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHL 747

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN + M+ AF  G D H  TA  ++    + V + Q                       R
Sbjct: 748  ANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ-----------------------R 784

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S  +AKK ++ ++     V  +    ++ +    +
Sbjct: 785  RSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGY 844

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TL GR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I K  R  +   
Sbjct: 845  VETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDD-NI 903

Query: 1066 KLLLQV 1071
            K+++QV
Sbjct: 904  KMIMQV 909


>gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005]
          Length = 876

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 150/259 (57%), Gaps = 29/259 (11%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY
Sbjct: 595  VHPDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADY 654

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 655  SQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIF-HVSE------------------- 694

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 695  ---EEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 751

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 752  TIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 811

Query: 1055 SKNARLKE--LGWKLLLQV 1071
            +  ARLKE  L  +LLLQV
Sbjct: 812  A--ARLKEERLQARLLLQV 828


>gi|334341036|ref|YP_004546016.1| DNA polymerase I [Desulfotomaculum ruminis DSM 2154]
 gi|334092390|gb|AEG60730.1| DNA polymerase I [Desulfotomaculum ruminis DSM 2154]
          Length = 878

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 176/346 (50%), Gaps = 38/346 (10%)

Query: 735  DALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKI-FATEQEAREAC---- 789
            +AL TL  +++ E   ++    L   G     + K  V    K  ++T+ E  E      
Sbjct: 512  EALATLIHHLAGEEFNINSTRQL---GQILFDKLKLPVYKKTKTGYSTDAEVLEKLAEEH 568

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQP 848
            + +S L E   +  L S +   L  + V  +  R+H + +   T TGRLS+  PNLQN P
Sbjct: 569  EIVSVLLEYRQLTKLKSTYADGL-AALVDPQTKRLHSTFHQTVTATGRLSSAEPNLQNIP 627

Query: 849  ALEKDRYKIRQAFIAVP---GNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 905
               +   +IR+ F  VP   GN ++ ADY Q+ELRILAH++   S LDAF+ G D H+RT
Sbjct: 628  IRLESGRRIRKVF--VPRQRGNLILTADYSQIELRILAHVSQDASFLDAFRQGQDIHTRT 685

Query: 906  AMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            A  ++      V   +V  +  G                  +AK +NF I YG +  GLA
Sbjct: 686  ASEVF-----GVSMDEVTPQLRG------------------RAKAVNFGIVYGISDFGLA 722

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
            RD +VS +EAK  +D ++     +  +     +E++   +V TLL R R  P + S   +
Sbjct: 723  RDLRVSRKEAKSYIDSYFARCPGIQNYIHRVIQEAKEQGYVTTLLNRRRYLPELFSSNYN 782

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             R+  ERAA+NTP+QG+AAD+   AM+ + +  R ++L  K++LQV
Sbjct: 783  IRSFGERAAMNTPIQGTAADIIKMAMVRVHQELREQDLKAKMVLQV 828


>gi|333981901|ref|YP_004511111.1| DNA polymerase I [Methylomonas methanica MC09]
 gi|333805942|gb|AEF98611.1| DNA polymerase I [Methylomonas methanica MC09]
          Length = 918

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 138/263 (52%), Gaps = 27/263 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LP Q   ++ + GRVH S +     TGRLS+  PNLQN P   ++  KIRQAFIA PG  
Sbjct: 634  LPQQ---INRRTGRVHTSYHQAVAATGRLSSSDPNLQNIPIRSEEGRKIRQAFIAPPGYK 690

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D HS TA  ++       E G        
Sbjct: 691  IVAADYSQIELRIMAHLSGDAGLLAAFSQGVDVHSATAAEVF-------EVG-------- 735

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                    L       RR AK +NF + YG +  GLA+   +S  +A+  +DL+++    
Sbjct: 736  --------LDQVTPDLRRSAKAINFGLIYGMSAFGLAQQLGLSRNQAQAYIDLYFSRYPG 787

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            V  + +  +++++   +V TL GR    P I +   +QR + ER AIN P+QG+AAD+  
Sbjct: 788  VKQYMDNIREQAKQQGYVETLFGRRLYLPDINARNAAQRQYAERTAINAPMQGTAADIIK 847

Query: 1049 CAMLEISKNARLKELGWKLLLQV 1071
             AM+      R      K+++QV
Sbjct: 848  RAMIACDAWIRDSGADLKMIMQV 870



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 107/246 (43%), Gaps = 55/246 (22%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L+   P  EDP+  K+  N  +D H+L N+G+K+ G   DTM  + + +S   T   ++
Sbjct: 391 VLDALRPLLEDPNKPKLGQNLKYDAHILANHGIKLRGIQHDTMLESYVLNS---TASKHN 447

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           ++ L   +  +  D   ++    KG    GF                            P
Sbjct: 448 MDDLA--KHYLGVDTIHFEDVAGKGAKQIGFQE-------------------------VP 480

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
           +E+  +        Y+A D+  TL+L+++L       S +L  +P     ++  Y+E   
Sbjct: 481 IEQAGQ--------YAAEDADITLRLHQTL-------SAQLQQQP----RLWGLYREIEI 521

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
           P  ++LV++E  G+L+D   L + + +  A + A + +       H       N+GS  Q
Sbjct: 522 PLIDVLVRIEENGVLIDSAMLDQ-QSLELANRMAGIEQ-----QAHDLAGSAFNLGSPKQ 575

Query: 664 LRQLLF 669
           ++++L+
Sbjct: 576 IQEILY 581


>gi|399518715|ref|ZP_10759669.1| DNA polymerase I [Pseudomonas pseudoalcaligenes CECT 5344]
 gi|399113209|emb|CCH36227.1| DNA polymerase I [Pseudomonas pseudoalcaligenes CECT 5344]
          Length = 931

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 148/280 (52%), Gaps = 29/280 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            L +  S+  L S +   LP Q   ++ + GR+H S +     TGRLS+  PNLQN P   
Sbjct: 630  LMQYRSLSKLKSTYTDKLPEQ---INPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRT 686

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
             +  +IRQAF+A  G  L+ ADY Q+ELRI+AHLA  K +LDAF    D H  TA  ++ 
Sbjct: 687  AEGRRIRQAFVAPKGYKLMAADYSQIELRIMAHLAKDKGLLDAFHHDLDVHRATAAEVF- 745

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
                      V LE             +  + +RRKAK +NF + YG +  GLA+   V 
Sbjct: 746  ---------GVALE-------------EVTSDQRRKAKAINFGLIYGMSAFGLAKQIDVE 783

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
             +EA+  +D ++     VLT+ E+ + ++    +V T+ GR    P I +  ++ R   E
Sbjct: 784  RKEAQAYIDRYFARYPGVLTYMESTRAQAAEQGYVETVYGRRLYLPEIHAQNQAMRKGAE 843

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            RAAIN P+QG+AAD+   AM+ +    +   +  +++LQV
Sbjct: 844  RAAINAPMQGTAADIIKRAMIAVDGWLQDSGIDARIILQV 883


>gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/251 (35%), Positives = 142/251 (56%), Gaps = 24/251 (9%)

Query: 822  GRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELR 880
            GR+H + +   T TGRL++  PNLQN P    +   IR+AF+   G  LI ADY Q+ELR
Sbjct: 574  GRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYMLIDADYSQIELR 633

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            ILAH++  + +++AFK   D HS+TA  ++      V+  QV            P++   
Sbjct: 634  ILAHISEDERLINAFKNNLDIHSQTAAEIF-----GVDISQV-----------TPIM--- 674

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
                R +AK +NF I YG +  GL+RD K+S +EA + ++ ++ +  +V  + +   K +
Sbjct: 675  ----RSQAKAVNFGIVYGISDYGLSRDIKISRKEAAEFINRYFEKYPKVKEYLDNVVKFA 730

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R +  V T+  R R    IKS  ++ RN+ ER A+N+P+QGSAAD+   AM+ + K  + 
Sbjct: 731  RENGFVLTIFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRVYKKLKE 790

Query: 1061 KELGWKLLLQV 1071
              L  +++LQV
Sbjct: 791  NNLKSRIILQV 801


>gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
            571]
 gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
            571]
          Length = 867

 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 158/293 (53%), Gaps = 36/293 (12%)

Query: 792  ISALCEVCSIDSLISNFI-----LPLQGSNVSG------KNGRVHCSLNINTE-TGRLSA 839
            +  L E+   + ++   I     + L+ + + G      K+ +VH +       TGR+S+
Sbjct: 550  MEVLVELIPYNEIVGEIIEYRQLMKLKSTYIDGFMPIMDKDDKVHSTFKQTVAATGRISS 609

Query: 840  RRPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
              PNLQN P  ++   +IR+AFI+   G  ++ ADY Q+ELR+LAHL+    ++++F   
Sbjct: 610  TEPNLQNIPVRDEFGRRIRKAFISSFQGGYIVSADYSQIELRVLAHLSEDIKLIESFLNN 669

Query: 899  GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
             D H RTA  ++      V TG++                      RR+AK +NF I YG
Sbjct: 670  EDIHLRTASEVFKIAPEEV-TGEM----------------------RRRAKAVNFGIVYG 706

Query: 959  KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
             +  GL+RD K+S +EAK+ +D +++  + V  + ++  K +R + +V T+L R R  P 
Sbjct: 707  ISDYGLSRDLKISRKEAKEYIDNYFDRYKGVKNYIDSVVKFARENGYVTTILNRRRYIPE 766

Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            I S   +QR+  ER A+NTP+QGSAAD+   +M+++    + + L  KL+LQ+
Sbjct: 767  INSKNYNQRSFGERMAMNTPIQGSAADIIKMSMVKVYNELKSRSLKSKLILQI 819


>gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel]
 gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel]
          Length = 849

 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/250 (37%), Positives = 134/250 (53%), Gaps = 30/250 (12%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S + + T TGR+S+  PNLQN P   K+  +IR+AF+A  G+ L+ ADY Q+EL+I
Sbjct: 576  RVHTSYSMVATATGRISSSNPNLQNIPIRSKEGTEIRKAFVAREGHKLVSADYSQMELKI 635

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            +AH+A  ++  DAF  G D H  TA  ++                 G+D     L     
Sbjct: 636  MAHIAGVQAFRDAFAEGKDIHQVTAQQIF-----------------GDDVTDPEL----- 673

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +P GLA++  ++ +EA + V+ ++    E+  + EA K  +R
Sbjct: 674  ---RRRAKSINFGIIYGMSPFGLAKNVGITRQEATQYVEQYFRSYPEIKNYMEAIKAYAR 730

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +  T  GR    P I S   + R   ERAAIN P+QG+AADV   AM+    N R K
Sbjct: 731  KYGYTRTAFGRKCYVPGINSAQHAIRGFAERAAINAPIQGTAADVVKKAMI----NLRDK 786

Query: 1062 ELGWKLLLQV 1071
                 ++LQV
Sbjct: 787  LEVGTIILQV 796


>gi|392555749|ref|ZP_10302886.1| DNA polymerase I [Pseudoalteromonas undina NCIMB 2128]
          Length = 911

 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 132/239 (55%), Gaps = 24/239 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ +  RVH S +   T TGRLS+  PNLQN P   ++  +IR+AFIA  G  ++ ADY 
Sbjct: 630  VNEQTKRVHTSYHQAVTATGRLSSSDPNLQNIPIRSEEGRRIREAFIAADGYKIVAADYS 689

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  K +L+AF  G D HS TA  ++      VE                 
Sbjct: 690  QIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVF-----GVE----------------- 727

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             L++  +  RRKAK +NF + YG +  GLAR   V   EA+  +D ++     VL + E 
Sbjct: 728  -LEEITSDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFERFPGVLEYMET 786

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             ++++  + +V T+ GR    P I +   ++R   ERAAIN P+QG+AAD+   AML +
Sbjct: 787  TREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAADIIKKAMLTV 845


>gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
 gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
          Length = 933

 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 135/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA  G  
Sbjct: 648  LPLMINPVSG---RVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPAGYR 704

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  + +L+AF AG D H  TA             G+V      
Sbjct: 705  IVAADYSQIELRIMAHLSQDRGLLNAFAAGKDIHRATA-------------GEVF----- 746

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 +PL K     +RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 747  ----GLPLDK-VTNEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPG 801

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  ++++    +V TL GR    P ++S    +R   ERAAIN P+QG+AAD+  
Sbjct: 802  VLEYMERTRQQASEQGYVSTLDGRRLYLPDVRSSNGMRRKAAERAAINAPMQGTAADIIK 861

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 862  RAMIAV 867


>gi|418461764|ref|ZP_13032828.1| DNA polymerase I [Saccharomonospora azurea SZMC 14600]
 gi|359738173|gb|EHK87073.1| DNA polymerase I [Saccharomonospora azurea SZMC 14600]
          Length = 901

 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/253 (34%), Positives = 142/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +GR+H +L+     TGRLS+  PNLQN P   ++  +IR AF+   G + L+ ADY Q+E
Sbjct: 623  DGRIHTTLHQTIAATGRLSSVEPNLQNIPVRTEEGRRIRDAFVVGEGYAELMTADYSQIE 682

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AHL+N ++++D+F++G DFH+ TA  ++      VE  +V  E             
Sbjct: 683  MRIMAHLSNDEALIDSFQSGFDFHASTAARVFD-----VEPTEVTGE------------- 724

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                 +R K K +N+ +AYG +  GL++  ++S EEA+  +D ++     V  +  +   
Sbjct: 725  -----QRAKIKAMNYGLAYGLSAYGLSQQLRISTEEARALMDEYFLRFGGVRDYLHSVVD 779

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +  D +  T+ GR R  P + S  R +R   ER A+N P+QGSAAD+   AML + +  
Sbjct: 780  RAAKDGYTQTIFGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLGVHRAL 839

Query: 1059 RLKELGWKLLLQV 1071
              +EL  ++LLQV
Sbjct: 840  TAQELRSRVLLQV 852


>gi|357050168|ref|ZP_09111376.1| hypothetical protein HMPREF9478_01359 [Enterococcus saccharolyticus
            30_1]
 gi|355381991|gb|EHG29101.1| hypothetical protein HMPREF9478_01359 [Enterococcus saccharolyticus
            30_1]
          Length = 881

 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 157/294 (53%), Gaps = 32/294 (10%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D LI   I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLKEQAPIVEDILIYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P   ++  KIR+AF+    + +I + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLEEGRKIREAFVPRAKDWVIYSSDYSQIELRVLAHISNDEHLKAAFVE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++                 G   P     ++   + RR+AK +NF I Y
Sbjct: 682  GQDIHSSTAMRVF-----------------GISTP-----EEVTPNMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  ++ + A++ +D ++ +   V T+ E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEEVVREAKDKGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             I S   + R   ER AINTP+QGSAAD+   AM+++ +  + ++L   +LLQV
Sbjct: 780  DINSRNFNLRTFAERTAINTPIQGSAADILKIAMIDLDRRLKEEKLQATMLLQV 833


>gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 887

 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 159/292 (54%), Gaps = 29/292 (9%)

Query: 784  EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRP 842
            + +E    +S + E   I  + S ++  L    +  ++GR+H   L   T TGRLS+  P
Sbjct: 573  QLKEQSPVVSDILEYRQISKIQSTYVKGLLDV-IDERDGRIHTRYLQTLTATGRLSSVDP 631

Query: 843  NLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            NLQN P   ++  +IR+AF+ + P   +   DY Q+ELR+LAH++   +M +AFK G D 
Sbjct: 632  NLQNIPTRTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDI 691

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TAM ++ H+ +  E   +                     +RR+AK +NF I YG + 
Sbjct: 692  HAHTAMKIF-HLSSVDEVTSL---------------------QRRRAKAVNFGIVYGISD 729

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GL+++  +S ++AK+ +D ++ +   +  + +   K++R   +  T++ R R  P I +
Sbjct: 730  YGLSKNLDISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMHRRRYLPDIHA 789

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
               + R+  ER AIN+P+QGSAAD+   AM+ + K  +L ELG   K+++QV
Sbjct: 790  KNFNVRSFAERTAINSPIQGSAADIMKIAMINMQK--KLDELGLKTKMVVQV 839


>gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195]
 gi|378710795|ref|YP_005275689.1| DNA polymerase I [Shewanella baltica OS678]
 gi|418022904|ref|ZP_12661890.1| DNA polymerase I [Shewanella baltica OS625]
 gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195]
 gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678]
 gi|353537906|gb|EHC07462.1| DNA polymerase I [Shewanella baltica OS625]
          Length = 921

 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/248 (37%), Positives = 129/248 (52%), Gaps = 27/248 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    V+ K GRVH + +  N  TGRLS+  PNLQN P   ++  +IRQAFIA  G  
Sbjct: 636  LPLM---VNAKTGRVHTNYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRK 692

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA  ++    + V T Q       
Sbjct: 693  ILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQ------- 745

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR+AK +NF + YG +  GLAR   +   EA+  +D ++     
Sbjct: 746  ----------------RRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQTYIDTYFARYPG 789

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  +  +    +V TL GR    P I+     +R   ERAAIN P+QG+AAD+  
Sbjct: 790  VLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERAAINAPMQGTAADIIK 849

Query: 1049 CAMLEISK 1056
             AM+ I++
Sbjct: 850  KAMINIAQ 857



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 63/264 (23%)

Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS--SRRTEGGY 482
           L +  P  EDP +KKV  N  +D  +L N G+K+ G   DTM  + +++S  SR    G 
Sbjct: 394 LEKLRPLLEDPKLKKVGQNLKYDISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGL 453

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
           +L+ L                    G+ +      IS ++I G+   +   +   + T A
Sbjct: 454 ALKYL--------------------GHKN------ISFEEIAGKGAKQLTFNQIPLETAA 487

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
           P              Y+A D+  TL+L++ L        W    K     +MF    E  
Sbjct: 488 P--------------YAAEDADITLRLHQHL--------WPRLEKEAELAAMF---TEVE 522

Query: 603 QPFGEILVKMETEGMLVDREYLS-EIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD 661
            P  ++L  +E +G+L+D   L  + +++AR      ++   + A       +  N+GS 
Sbjct: 523 LPLIQVLSDIERQGVLIDSMLLGQQSDELAR-----KIDTLEEKAYDIA--GEKFNLGSP 575

Query: 662 TQLRQLLFG--GKPNSKDDSESLP 683
            QL+ L F   G P +K   +  P
Sbjct: 576 KQLQVLFFEKLGYPITKKTPKGAP 599


>gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
 gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
          Length = 920

 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/257 (36%), Positives = 135/257 (52%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ K GR+H S N   T TGRLS+  PNLQN P   ++  +IR  FI   GN LI ADY 
Sbjct: 639  INEKTGRIHASFNQTVTATGRLSSSEPNLQNIPVRGEEGREIRNTFIPEKGNLLIAADYS 698

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH +N  ++++AFK   D H +TAM +Y   +  V                  
Sbjct: 699  QIELRLLAHFSNDPTLVEAFKNNDDIHRKTAMKIYSVSKEHVT----------------- 741

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                  AS R  AK++NFSI YGKT  GL+++  +  +EA+  +  +++    V  + E 
Sbjct: 742  ------ASMRNIAKIINFSIIYGKTAFGLSKELGIKRKEAEDFIKGYFSTYSRVKPFCEE 795

Query: 996  RKKESRIDNHVHTLLGRARRFP-AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              +E R    V T+ GR R     I S     RN  ER A+NT +QGSAAD+   AM+ I
Sbjct: 796  VVEEVRNKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLIQGSAADMIKVAMVAI 855

Query: 1055 SKNARLKELGWKLLLQV 1071
             K  +      K+++QV
Sbjct: 856  HKEFKNHLKTAKIVMQV 872


>gi|384208299|ref|YP_005594019.1| DNA polymerase I [Brachyspira intermedia PWS/A]
 gi|343385949|gb|AEM21439.1| DNA polymerase I [Brachyspira intermedia PWS/A]
          Length = 881

 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/269 (36%), Positives = 140/269 (52%), Gaps = 25/269 (9%)

Query: 805  ISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIA 863
            + N  L +  + ++ K GR+H S N   T TGRLS+  PNLQN P   ++  +IR  FI 
Sbjct: 588  LKNTYLDVFPTLINEKTGRIHASFNQTVTATGRLSSSEPNLQNIPVRGEEGREIRNTFIP 647

Query: 864  VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923
              GN LI ADY Q+ELR+LAH +N   +++AFK   D H +TAM +Y   +  V      
Sbjct: 648  EKGNLLIAADYSQIELRLLAHFSNDPVLVEAFKNNDDIHRKTAMKIYSVSKEHVT----- 702

Query: 924  LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWY 983
                              AS R  AK++NFSI YGKT  GL+++  +  +EA+  +  ++
Sbjct: 703  ------------------ASMRNIAKIINFSIIYGKTAFGLSKELGIKRKEAEDFIKGYF 744

Query: 984  NERQEVLTWQEARKKESRIDNHVHTLLGRARRFP-AIKSLTRSQRNHIERAAINTPVQGS 1042
            +    V  + E   +E R   +V T+ GR R     I S     RN  ER A+NT +QGS
Sbjct: 745  STYSRVKPFCEEVVEEVRNKGYVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLIQGS 804

Query: 1043 AADVAMCAMLEISKNARLKELGWKLLLQV 1071
            AAD+   AM+ I K  +      K+++QV
Sbjct: 805  AADMIKVAMVAIHKEFKNHLKTAKIVMQV 833


>gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
            bulgaricus PB2003/044-T3-4]
 gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
            bulgaricus PB2003/044-T3-4]
          Length = 887

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 159/292 (54%), Gaps = 29/292 (9%)

Query: 784  EAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRP 842
            + +E    +S + E   I  + S ++  L    +  ++GR+H   L   T TGRLS+  P
Sbjct: 573  QLKEQSPVVSDILEYRQISKIQSTYVKGLLDV-IDERDGRIHTRYLQTLTATGRLSSVDP 631

Query: 843  NLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDF 901
            NLQN P   ++  +IR+AF+ + P   +   DY Q+ELR+LAH++   +M +AFK G D 
Sbjct: 632  NLQNIPTRTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDI 691

Query: 902  HSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP 961
            H+ TAM ++ H+ +  E   +                     +RR+AK +NF I YG + 
Sbjct: 692  HAHTAMKIF-HLSSVDEVTSL---------------------QRRRAKAVNFGIVYGISD 729

Query: 962  VGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKS 1021
             GL+++  +S ++AK+ +D ++ +   +  + +   K++R   +  T++ R R  P I +
Sbjct: 730  YGLSKNLDISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMHRRRYLPDIHA 789

Query: 1022 LTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
               + R+  ER AIN+P+QGSAAD+   AM+ + K  +L ELG   K+++QV
Sbjct: 790  KNFNVRSFAERTAINSPIQGSAADIMKIAMINMQK--KLDELGLKTKMVVQV 839


>gi|257869278|ref|ZP_05648931.1| DNA polymerase A [Enterococcus gallinarum EG2]
 gi|257803442|gb|EEV32264.1| DNA polymerase A [Enterococcus gallinarum EG2]
          Length = 881

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 157/294 (53%), Gaps = 32/294 (10%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D LI   I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLKEQAPIVEDILIYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P   ++  KIR+AF+    + +I + DY Q+ELR+LAH++N + +  AF  
Sbjct: 622  SVDPNLQNIPIRLEEGRKIREAFVPRAKDWVIYSSDYSQIELRVLAHISNDEHLKAAFVE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++                 G   P     ++   + RR+AK +NF I Y
Sbjct: 682  GQDIHSSTAMRVF-----------------GISTP-----EEVTPNMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  ++ + A++ +D ++ +   V T+ E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEEVVREAKDKGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             I S   + R   ER AINTP+QGSAAD+   AM+++ +  + ++L   +LLQV
Sbjct: 780  DINSRNFNLRTFAERTAINTPIQGSAADILKIAMIDLDRRLKEEKLQATMLLQV 833


>gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 143/256 (55%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++   GR+H + +   T TGRL++  PNLQN P    +   IR+AF+   G  LI ADY 
Sbjct: 569  INPATGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYVLIDADYS 628

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRILAH++  + +++AFK   D HS+TA  ++      V+  QV            P
Sbjct: 629  QIELRILAHISEDERLINAFKNNLDIHSQTAAEIF-----GVDISQV-----------TP 672

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            ++       R +AK +NF I YG +  GL+RD K+S +EA + ++ ++ +   V  + + 
Sbjct: 673  IM-------RSQAKAVNFGIVYGISDYGLSRDIKISRKEAAEFINRYFEKYPRVKEYLDN 725

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
              K +R +  V T+  R R    IKS  ++ RN+ ER A+N+P+QGSAAD+   AM+ + 
Sbjct: 726  VVKFARENGFVLTIFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRVY 785

Query: 1056 KNARLKELGWKLLLQV 1071
            K  +   L  +++LQV
Sbjct: 786  KKLKENNLKSRIILQV 801


>gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42]
 gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA poyimerase I protein [Rhizobium etli
            CFN 42]
          Length = 999

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/254 (38%), Positives = 134/254 (52%), Gaps = 30/254 (11%)

Query: 823  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 719  RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 778

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A    +  AF+ G D H+ TA  M+         G  +    GE            
Sbjct: 779  LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 817

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+RK  +R
Sbjct: 818  --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 875

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM+++     L 
Sbjct: 876  DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKMEPA--LA 933

Query: 1062 ELGW----KLLLQV 1071
            E G     ++LLQV
Sbjct: 934  EAGLAERVRMLLQV 947



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 61/251 (24%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED S+ KV  N  +D  +++ YG++   F  DTM ++ + D+     G 
Sbjct: 465 RDALPRLKALLEDESVLKVAQNLKYDYLLMKRYGVETKSFD-DTMLISYVLDAG---TGA 520

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +GK +
Sbjct: 521 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 548

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 549 ITFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRLA------------AAGLTSVYE 591

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   +L +ME  G+ VDR+ LS      R   E A    R     +    +  N+G
Sbjct: 592 RLERPLLPVLARMEARGITVDRQILS------RLSGELAQGAARLEDEIYTLAGERFNIG 645

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 646 SPKQLGDILFG 656


>gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H]
 gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H]
          Length = 936

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/246 (37%), Positives = 133/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    VS K  R+H S +   T TGRLS+  PNLQN P   +   KIRQAFIA   + 
Sbjct: 651  LPLM---VSDKTNRLHTSYHQAVTATGRLSSTDPNLQNIPIRSEQGRKIRQAFIAPKDHK 707

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++  DY Q+ELRI+AHL+N K ++ AF  G D H  TA  ++     AVE G+V  +   
Sbjct: 708  IVAIDYSQIELRIMAHLSNDKGLVTAFSEGKDIHRATAAEIF-----AVELGEVTTD--- 759

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                           +RR AK +NF + YG +  GLA+   +  ++A++  D ++     
Sbjct: 760  ---------------QRRSAKAINFGLIYGMSAFGLAKQLHIGRQQAQEYQDKYFQRYPG 804

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VLT+ E  ++++    +V TL GR    P I +    ++   ERAAIN P+QG+AAD+  
Sbjct: 805  VLTYMEDTRQQASEQGYVETLYGRRLYLPDINAKNGMRKKAAERAAINAPMQGTAADIIK 864

Query: 1049 CAMLEI 1054
             AML +
Sbjct: 865  KAMLAV 870


>gi|418122374|ref|ZP_12759309.1| DNA polymerase I family protein [Streptococcus pneumoniae GA44378]
 gi|353797847|gb|EHD78177.1| DNA polymerase I family protein [Streptococcus pneumoniae GA44378]
          Length = 877

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 159/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I+ +Q + V G       +G++H   L   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIVKIQSTYVIGLQDWILADGKIHTRYLQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      +  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DNVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108]
 gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108]
          Length = 850

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 144/261 (55%), Gaps = 26/261 (9%)

Query: 812  LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            LQ  N S   GRVH + +   T TGRL++  PNLQN P    +   IR+ F+   G+ LI
Sbjct: 567  LQAINPSS--GRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEEGHVLI 624

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
             ADY Q+ELRILAH++  + +++AFK   D HS+TA  ++                 G D
Sbjct: 625  DADYSQIELRILAHISEDERLINAFKNNIDIHSQTAAEVF-----------------GVD 667

Query: 931  KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
                  + D     R +AK +NF I YG +  GLARD K+S +EA + ++ ++    +V 
Sbjct: 668  ------IADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVK 721

Query: 991  TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
             + +   + +R + +V TL  R R    IKS  R+ R++ ER A+N+P+QGSAAD+   A
Sbjct: 722  EYLDNIVRFARENGYVLTLFNRKRYVKDIKSANRNARSYAERIAMNSPIQGSAADIMKLA 781

Query: 1051 MLEISKNARLKELGWKLLLQV 1071
            M+++ +  +   L  K++LQV
Sbjct: 782  MIKVYQKLKENNLKSKIILQV 802


>gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli]
 gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli]
          Length = 898

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/257 (38%), Positives = 135/257 (52%), Gaps = 24/257 (9%)

Query: 816  NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
             ++ K GRVH S +     TGRLS+  PNLQN PA   +  KIRQAFIA PG  ++ ADY
Sbjct: 617  QINPKTGRVHTSYHQAAVVTGRLSSSDPNLQNIPARTHEGRKIRQAFIAPPGYFILAADY 676

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRI+AH +  K +L AF  G D H  TA              +VL          +
Sbjct: 677  SQIELRIIAHFSQDKGLLKAFAQGLDIHQATA-------------AEVL---------NI 714

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PL +     +RR AK +NF + YG +  GLAR   +S E+AK  ++ +++    V  + E
Sbjct: 715  PL-ERVTHEQRRSAKAINFGLMYGMSAFGLARQLGISREDAKNYIERYFDRYPGVKRYME 773

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              ++ +    +V TL GR      I S    QR   ERAAIN P+QGSAAD+   AM+ I
Sbjct: 774  RIRQRAHEQRYVTTLFGRRLNLAFINSNDSLQRRASERAAINAPLQGSAADIIKKAMIRI 833

Query: 1055 SKNARLKELGWKLLLQV 1071
                  K+L   +++QV
Sbjct: 834  DAELIKKKLDAHMIMQV 850



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 104/266 (39%), Gaps = 73/266 (27%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L +  P FEDP   K+ H+  +D ++L +YG+++ G   DTM  + L DS+        
Sbjct: 371 VLQQLKPLFEDPKQIKIGHHLKYDMNILAHYGIQLRGIDFDTMLESYLLDSASNQH---- 426

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
                      S D  A +    K    E   GK + +  F +  L+  G          
Sbjct: 427 -----------SLDSAALKHLDHKTIRFEEIAGKGAKQKTFNQINLQDAG---------- 465

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
                         Y+A D+   L+L+++LK +L           V G S    Y E   
Sbjct: 466 -------------PYAAEDAAIALRLHETLKPQL---------DNVVGLST--VYTEIEM 501

Query: 604 PFGEILVKMETEGMLVDREYL-----SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNV 658
           P   +L +ME  G+L+D   L     S  +++   EQ+A    F+          K  N+
Sbjct: 502 PLVTVLARMERHGVLIDAPLLKKQSRSIAKRLLTLEQQA----FQLA-------GKPFNL 550

Query: 659 GSDTQLRQLLFGGKPNSKDDSESLPI 684
           GS  QL+ +LF        D   LPI
Sbjct: 551 GSPKQLQTILF--------DDHGLPI 568


>gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
 gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
          Length = 880

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 153/284 (53%), Gaps = 26/284 (9%)

Query: 790  DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQP 848
            D I  L     +  L S +I  L    V     R+H   N   T+TGRLS+  PNLQN P
Sbjct: 573  DIIPKLLMYRQLGKLQSTYIEGLLKV-VRKDTSRIHTRYNQALTQTGRLSSIEPNLQNIP 631

Query: 849  ALEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
               ++  KIRQAF+    N  +  ADY Q+ELR+LAH+A  + ++ AFK   D H++TAM
Sbjct: 632  IRLEEGRKIRQAFVPSKDNWIMFAADYSQIELRVLAHIAGDEKLIKAFKEDTDIHTQTAM 691

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
            +++      VE+ +V                   ++ RR+AK +NF I YG +  GL+++
Sbjct: 692  DVF-----HVESDEVT------------------SNMRRQAKAVNFGIVYGISDYGLSQN 728

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              ++ +EAKK ++ ++N    V T+ +   +E++    V T++ R R  P I S   + R
Sbjct: 729  LGITRKEAKKFIERYFNSYPGVKTYMDEIVQEAKHKGFVSTIMKRRRYLPDITSRNFNMR 788

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +  ER A+NTP+QGSAAD+   AM+++    + + L   +LLQV
Sbjct: 789  SFAERTAMNTPIQGSAADIIKKAMIDLDHRLKEENLQANVLLQV 832


>gi|376295933|ref|YP_005167163.1| DNA polymerase I [Desulfovibrio desulfuricans ND132]
 gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132]
          Length = 888

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 156/303 (51%), Gaps = 29/303 (9%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
            G  ++ N++    ++ R+    + A+ E   ++ L S ++ PL    + G++GR+H   N
Sbjct: 566  GLRSTANQVL---EKIRDQHPIVDAVLEFRMLEKLRSTYLEPL--PKMVGEDGRLHTHFN 620

Query: 830  -INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANC 888
             ++T TGRLS+ +PNLQN P       ++R  F A  GN L  ADY Q+ELR+LAH +  
Sbjct: 621  QLSTATGRLSSSQPNLQNIPIRGVHGPRMRACFNAAEGNMLAAADYSQIELRVLAHFSKD 680

Query: 889  KSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKA 948
              ++DAF+   D H+RTA  ++    +AV                          ERR A
Sbjct: 681  PELIDAFRHDEDIHARTAALIHDKDISAVTP-----------------------DERRGA 717

Query: 949  KMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHT 1008
            K +NF + YG     LAR+ ++   EA++  + ++ +   +  + +   K++     V T
Sbjct: 718  KTINFGLIYGMGVQKLARELQIKQTEAQEFTEKYFAKMATLKAYYDTVVKDAETHGFVTT 777

Query: 1009 LLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLL 1068
            L GR R  P + S          R A+NT +QGSAAD+   AM++  K+ RL+ELG +L+
Sbjct: 778  LAGRRRLLPELHSRNNQLSAQARRQAVNTVIQGSAADIIKMAMVQAHKDKRLRELGAQLI 837

Query: 1069 LQV 1071
            LQV
Sbjct: 838  LQV 840


>gi|398386226|ref|ZP_10544229.1| DNA polymerase I [Sphingobium sp. AP49]
 gi|397718594|gb|EJK79180.1| DNA polymerase I [Sphingobium sp. AP49]
          Length = 930

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 164/332 (49%), Gaps = 46/332 (13%)

Query: 793  SALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQ 847
            SA+C +      +  L S +   LQ   ++   GRVH S ++   +TGRLS+  PNLQN 
Sbjct: 622  SAICGLVLEWRQLSKLKSTYTDALQ-QQINRDTGRVHTSYSLTGAQTGRLSSTDPNLQNI 680

Query: 848  PALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAM 907
            P   +   +IR AF+A PGN ++ ADY Q+ELR+ AH+A+  ++ DAF+ G D H+RTAM
Sbjct: 681  PIRTEIGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKDAFEQGEDIHNRTAM 740

Query: 908  NMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARD 967
             ++  +                               R +AK +NF+I YG +  GLA  
Sbjct: 741  ELFGEVNR---------------------------DTRGRAKTINFAILYGISRWGLAGR 773

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
             ++S +EA+  +  +Y     +  +     +++R +    TL GR   FP IK+  + +R
Sbjct: 774  LEISADEAQDMISRYYERFPGISVYINETLEKARANGFTETLFGRKTWFPRIKAAVQHER 833

Query: 1028 NHIERAAINTPVQGSAADVAMCAM------LEISKNARLKELGWKLLLQVLFFFSFSFFS 1081
               ERAAIN P+QG++AD+   AM      LE S   R+     ++LLQV     F    
Sbjct: 834  QGAERAAINAPIQGTSADIIKRAMARMGPALEASGLPRV-----RMLLQVHDELVFELPE 888

Query: 1082 IIVIVSCQGI--VLANAMHPMFGKSSRLHYDV 1111
              V  + + I  V+ +A  PM   S  L  ++
Sbjct: 889  ADVEAASKVIRQVMESAAEPMVSLSVPLGVEI 920


>gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01]
 gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01]
          Length = 960

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 148/280 (52%), Gaps = 29/280 (10%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            L +  S+  L S +   LP Q   ++ + GR+H S +     TGRLS+  PNLQN P   
Sbjct: 659  LMQYRSLSKLKSTYTDKLPEQ---INPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRT 715

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYP 911
             +  +IRQAF+A  G  L+ ADY Q+ELRI+AHLA  + +LDAF+   D H  TA  ++ 
Sbjct: 716  AEGRRIRQAFVAPKGYKLMAADYSQIELRIMAHLAKDEGLLDAFRYDLDVHKATAAEVFG 775

Query: 912  HIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971
                                  VPL     + +RRKAK +NF + YG +  GLA+   V 
Sbjct: 776  ----------------------VPL-DQVTSDQRRKAKAINFGLIYGMSAFGLAKQIDVE 812

Query: 972  VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIE 1031
             +EA+  +D ++     VLT+ E+ + ++    +V T+ GR    P I +  ++ R   E
Sbjct: 813  RKEAQAYIDRYFARYPGVLTYMESTRAQAAEQGYVETVYGRRLYLPEIHAQNQAMRKGAE 872

Query: 1032 RAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            RAAIN P+QG+AAD+   AM+ +    +   +  +++LQV
Sbjct: 873  RAAINAPMQGTAADIIKRAMIAVDGWLQDSGIDARIILQV 912


>gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
 gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
          Length = 930

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 152/291 (52%), Gaps = 32/291 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++    +E   + +    L E   +  L S +   LP     V+ + GRVH 
Sbjct: 607  KGAPSTNEEVL---EELAYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 660

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G S++ ADY Q+ELRI+AHL
Sbjct: 661  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 720

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  + +++AF  G D H  TA  ++         G  L E   E              +R
Sbjct: 721  SGDQGLINAFSQGKDIHRSTAAEIF---------GVSLDEVTSE--------------QR 757

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+R   +S  +AKK +DL++     V  +    +++++   +
Sbjct: 758  RNAKAINFGLIYGMSAFGLSRQLDISRPDAKKYMDLYFQRYPSVQQFMTDIREKAKAQGY 817

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM+++ +
Sbjct: 818  VETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKLDE 868



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 156/395 (39%), Gaps = 99/395 (25%)

Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVV 358
           S  ++ ++  K +  + T Q++ A EN  + K++I R+K  +          ++ A    
Sbjct: 297 SITQTTEQPVKMNQYQATSQDQSAVEN--TPKIQIDRTKYETL---------LTQADLTR 345

Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
           W+       L+ A DTE   +D      V     I F++ +G  A        + +D LD
Sbjct: 346 WIEKLNTAKLI-AVDTETDSLDYMSANLVG----ISFALENGEAAYL-----PLQLDYLD 395

Query: 419 GGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
                     L    P  E+P I K+  N  FD  +   +G+++ G   DTM ++   +S
Sbjct: 396 APKTLEKSTALAAIKPILENPDIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYTLNS 455

Query: 475 SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
           +    G ++++ L   ++ +  +  A++    KG        +++   I           
Sbjct: 456 T----GRHNMDDLA--KRYLGHETIAFESIAGKGK------NQLTFNQI----------- 492

Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKS 593
                   P+E+           Y+A D+  T+KL ++L        W KL  +P    +
Sbjct: 493 --------PLEQ--------ATEYAAEDADVTMKLQQAL--------WLKLQQEP----T 524

Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWASKH 649
           + + Y+    P   +L +ME  G+L+D   L    +EI     A +E A      +    
Sbjct: 525 LVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRLTALEEQA------YELAG 578

Query: 650 CPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPI 684
            P     N+ S  QL+++LF        D   LPI
Sbjct: 579 QP----FNLASTKQLQEILF--------DKLGLPI 601


>gi|414161038|ref|ZP_11417301.1| DNA polymerase I [Staphylococcus simulans ACS-120-V-Sch1]
 gi|410876717|gb|EKS24615.1| DNA polymerase I [Staphylococcus simulans ACS-120-V-Sch1]
          Length = 876

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 148/282 (52%), Gaps = 27/282 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            I  + E   +  L S ++  LQ   V   + R+H   N    +TGRLS+  PNLQN P  
Sbjct: 572  IEDILEYRQLSKLQSTYVEGLQ--KVIQDDNRIHTHFNQTLAQTGRLSSVDPNLQNIPVR 629

Query: 851  EKDRYKIRQAF-IAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             ++  +IR+AF  A   N ++ ADY Q+ELR+LAH+   +SM++AF+ G D H+ TAM +
Sbjct: 630  LEEGRRIRKAFKPAEVDNVILSADYSQIELRVLAHITQDESMMNAFREGRDIHTATAMKV 689

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
            +      VE  +V                D     RR+AK +NF I YG +  GL++   
Sbjct: 690  F-----GVEADEV----------------DGLM--RRQAKAVNFGIVYGISDYGLSQSLG 726

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++ + AKK +D + +    V  +     K+++   +V TLL R R  P I S   +QR+ 
Sbjct: 727  ITRKAAKKFIDDYLDSFPGVKQYMSDIVKDAKAKGYVETLLHRRRYIPDITSRNFNQRSF 786

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             ER A+NTP+QGSAAD+   AM+   K  +  +    LLLQV
Sbjct: 787  AERTAMNTPIQGSAADIIKLAMVNYDKAVKETDFNAHLLLQV 828


>gi|384085835|ref|ZP_09997010.1| DNA polymerase I [Acidithiobacillus thiooxidans ATCC 19377]
          Length = 907

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 136/256 (53%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH         TGRLS+  PNLQN P   +   +IRQAF+A  G  L+ ADY 
Sbjct: 626  INSRTGRVHTHFQQAVAATGRLSSSAPNLQNIPVRTEQGRRIRQAFVAEDGFYLLSADYS 685

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+    +L AF  G D H+ TA  ++     AV++                
Sbjct: 686  QIELRIMAHLSRDARLLQAFAEGQDIHAATAAEVFNLAPEAVDS---------------- 729

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
               DA    RR AK +NF + YG+TP GLA+   +    A+  +D ++     VLT+ E 
Sbjct: 730  ---DA----RRAAKAINFGLIYGQTPYGLAQQLGIEQSAARAYMDRYFERYPGVLTYMEQ 782

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  +R   +V TL GR    P I+S   ++RN+ ERAAIN P+QG+AAD+   AM+ + 
Sbjct: 783  TRVLARQQGYVETLFGRRLYVPEIRSSNAARRNYAERAAINAPMQGTAADLIKKAMIAVD 842

Query: 1056 KNARLKELGWKLLLQV 1071
               +      +++LQV
Sbjct: 843  AWLQENPARGRMILQV 858


>gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 867

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/272 (37%), Positives = 148/272 (54%), Gaps = 30/272 (11%)

Query: 804  LISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI 862
            L S ++  ++G  +S +  R+H S N   T TGRLS+  PNLQN P   ++  +IR  F 
Sbjct: 574  LQSTYLDSMEGL-ISPRTKRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEEGRQIRALFE 632

Query: 863  AVPG-NSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
               G ++L+ ADY Q+ELRILAHL+  K+ L+AF  G D H+RTA  ++     AV T  
Sbjct: 633  PSDGYDALMSADYSQIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDL 692

Query: 922  VLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDL 981
                                   RRKAK +NF I YG +  GL++D  +S +EA   +  
Sbjct: 693  -----------------------RRKAKAVNFGIVYGISDYGLSKDLHISRQEAADYIAS 729

Query: 982  WYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQG 1041
            ++ +   +  + +   +++  D  V T+ GR R  PAIKS   +QR   ER A+NTP+QG
Sbjct: 730  YFAKCSGIKRFIDGVVEKAHKDGFVTTIFGRRRDLPAIKSSNYNQRTLAERMAMNTPIQG 789

Query: 1042 SAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
            SAAD+   AM  I  +  L+E G+K  +LLQV
Sbjct: 790  SAADIIKLAM--IKTHRALQEGGFKSRILLQV 819


>gi|257875613|ref|ZP_05655266.1| DNA polymerase I [Enterococcus casseliflavus EC20]
 gi|257809779|gb|EEV38599.1| DNA polymerase I [Enterococcus casseliflavus EC20]
          Length = 881

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 157/294 (53%), Gaps = 32/294 (10%)

Query: 788  ACDAISALCEVCSI--DSLISNFILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L E   I  D L    I  +Q + V G       +G+VH   +   T+TGRLS
Sbjct: 562  AVDVLEQLKEQAPIVEDILTYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQTLTQTGRLS 621

Query: 839  ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P   ++  KIR+AF+    + +I + DY Q+ELR+LAH+++   + +AF  
Sbjct: 622  SVDPNLQNIPIRLEEGRKIREAFVPREADWVIYSSDYSQIELRVLAHISDDTHLKEAFIE 681

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++      +E          ED  P         + RR+AK +NF I Y
Sbjct: 682  GQDIHSSTAMRVF-----GIE--------KAEDVTP---------NMRRQAKAVNFGIVY 719

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  ++ + A++ +D ++ +   V T+ E   +E++   +V TL  R R  P
Sbjct: 720  GISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRYLP 779

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             I S   + R   ER AINTP+QGSAAD+   AM+++ K  + ++L   +LLQV
Sbjct: 780  DINSRNFNIRTFAERTAINTPIQGSAADILKIAMIDLVKRLKEEKLAATMLLQV 833


>gi|389578957|ref|ZP_10168984.1| DNA polymerase I [Desulfobacter postgatei 2ac9]
 gi|389400592|gb|EIM62814.1| DNA polymerase I [Desulfobacter postgatei 2ac9]
          Length = 896

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/274 (36%), Positives = 147/274 (53%), Gaps = 27/274 (9%)

Query: 800  SIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIR 858
            ++D L S ++  L  S V  + GR+H S N   T TGRLS+  PNLQN P  + +  KIR
Sbjct: 599  TLDKLKSTYVDSL-SSLVHPQTGRIHTSFNQTITVTGRLSSSNPNLQNIPIRKPEGKKIR 657

Query: 859  QAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVE 918
            QAFI   G +LI ADY Q+ELR+LAH A    ++++F+   D H+RTA+ ++        
Sbjct: 658  QAFIPADGCTLISADYSQIELRLLAHCAMDPILIESFRKDEDIHTRTALEVF-------- 709

Query: 919  TGQVLLEWHGEDKPPVP-LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKK 977
              QVL           P L+ D     R +AK +NF I YG     LA +  +S + A  
Sbjct: 710  --QVL-----------PGLVTDEM---RSQAKAINFGIIYGMGAFRLANELGISRKMADI 753

Query: 978  TVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINT 1037
             +D ++     V T+ +    ++R    V TL GR RR   I+S   + RN  +RAA+NT
Sbjct: 754  YIDNYFKRYAGVKTFIDKTIMQTRETCEVSTLFGRKRRLDDIRSSNANLRNFAQRAAVNT 813

Query: 1038 PVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P+QGSAAD+   AM+++      + +  K+LL V
Sbjct: 814  PIQGSAADLIKLAMIKMQAALATERMASKMLLSV 847



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 17/118 (14%)

Query: 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGG------R 422
           V A DTE   ID     P+   +++  S     +A F      I V   + GG       
Sbjct: 318 VFAVDTETTDID-----PM-RADLVGLSFSYMEDAGF-----YIPVGHTNTGGIQMPEKE 366

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEG 480
           DLL  F P  E+P I KV  N  +D  VL  YG+++ G   DTM  + L +   R  G
Sbjct: 367 DLLRIFKPLLENPDIAKVGQNIKYDFIVLARYGIEIKGIVFDTMIASHLLNPGTRGHG 424


>gi|417931424|ref|ZP_12574789.1| DNA-directed DNA polymerase [Propionibacterium acnes SK182B-JCVI]
 gi|340775367|gb|EGR97420.1| DNA-directed DNA polymerase [Propionibacterium acnes SK182B-JCVI]
          Length = 915

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/253 (36%), Positives = 142/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ FI   G  SL+ ADY Q+E
Sbjct: 637  DGRVHTTYMQTIAATGRLSSKDPNLQNIPMRTEEGRRIREGFIVGEGYESLLSADYSQIE 696

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 697  MRIMAHVSGDQSLIDAFRSGQDFHTVTASHVF---------------------GVAP--E 733

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  + +   +V  + E    
Sbjct: 734  DVSMAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYSSRFGKVHEYLEEVVD 793

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R+  ERAA+N P+QGSAAD+   AML   +  
Sbjct: 794  QARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKL 853

Query: 1059 RLKELGWKLLLQV 1071
                L  ++LLQV
Sbjct: 854  AEAALKSRVLLQV 866


>gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 866

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/272 (37%), Positives = 148/272 (54%), Gaps = 30/272 (11%)

Query: 804  LISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI 862
            L S ++  ++G  +S +  R+H S N   T TGRLS+  PNLQN P   ++  +IR  F 
Sbjct: 573  LQSTYLDSMEGL-ISPRTKRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEEGRQIRALFE 631

Query: 863  AVPG-NSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQ 921
               G ++L+ ADY Q+ELRILAHL+  K+ L+AF  G D H+RTA  ++     AV T  
Sbjct: 632  PSDGYDALMSADYSQIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDL 691

Query: 922  VLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDL 981
                                   RRKAK +NF I YG +  GL++D  +S +EA   +  
Sbjct: 692  -----------------------RRKAKAVNFGIVYGISDYGLSKDLHISRQEAADYIAS 728

Query: 982  WYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQG 1041
            ++ +   +  + +   +++  D  V T+ GR R  PAIKS   +QR   ER A+NTP+QG
Sbjct: 729  YFAKCSGIKRFIDGVVEKAHKDGFVTTIFGRRRDLPAIKSSNYNQRTLAERMAMNTPIQG 788

Query: 1042 SAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
            SAAD+   AM  I  +  L+E G+K  +LLQV
Sbjct: 789  SAADIIKLAM--IKTHRALQEGGFKSRILLQV 818


>gi|421767133|ref|ZP_16203893.1| DNA polymerase I [Lactococcus garvieae DCC43]
 gi|407624368|gb|EKF51129.1| DNA polymerase I [Lactococcus garvieae DCC43]
          Length = 871

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/294 (33%), Positives = 151/294 (51%), Gaps = 33/294 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D + +L +   + + I  +  +  +Q + V G       +GR+H   +   T+TGRLS
Sbjct: 553  AADILESLAQEYELVAKILEYRQVSKIQSTYVQGLIPQIAADGRIHTRYVQDLTQTGRLS 612

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P  LE  R  IR+AF+A   N L+ +DY Q+ELR+LAH++  + ++DAF  
Sbjct: 613  SVEPNLQNIPVRLEAGRL-IRKAFVAAEDNILLSSDYSQIELRVLAHMSKDEHLIDAFNH 671

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TAM ++                 G DKP     ++   ++RR AK +NF I+Y
Sbjct: 672  GADIHSSTAMRVF-----------------GIDKP-----ENVTPNDRRNAKAVNFGISY 709

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G+T  GLA+   +S +EA   +  ++     V  +    K++++    V T+  R R+ P
Sbjct: 710  GETEYGLAKRLNISNKEAGDMIRAYFERYPGVANYIAETKRDAKDKGFVSTMFNRRRKLP 769

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             I +     R   ER AIN P+QGSA D+   AM+ +           +LLLQV
Sbjct: 770  EINNRNFMVRQGAERQAINAPIQGSAGDILKIAMINLDSALSEGNFKARLLLQV 823


>gi|421288700|ref|ZP_15739452.1| DNA polymerase [Streptococcus pneumoniae GA54354]
 gi|395889960|gb|EJH00966.1| DNA polymerase [Streptococcus pneumoniae GA54354]
          Length = 870

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 159/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 551  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 610

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 611  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 669

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 670  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 707

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R  ++V TL  R R  
Sbjct: 708  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRREL 767

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 768  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 822


>gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989]
 gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989]
          Length = 782

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 133/241 (55%), Gaps = 24/241 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++   GR+H S +   T TGRLS+  PNLQN P    +  +IRQAF+A  G  ++ ADY 
Sbjct: 496  INPATGRIHTSYHQAVTATGRLSSSDPNLQNIPIRNAEGRRIRQAFVAPKGYKILAADYS 555

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  + +L+AF  G D HS TA  ++      VE  QV  E          
Sbjct: 556  QIELRIMAHLSGDEGLLEAFNQGKDVHSATAAEVF-----GVELDQVTQE---------- 600

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                    +RR+AK +NF + YG +  GLA+   V   +A++ +D+++     V ++ + 
Sbjct: 601  --------QRRRAKAINFGLIYGMSAFGLAKQLGVGRNDAQQYIDVYFERYPGVKSYMDG 652

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             ++++ +D +V TL GR    P I +    +R   ER AIN P+QG+AAD+   AM+ + 
Sbjct: 653  VRQQAAVDGYVETLEGRRLYLPEINARNGMRRQAAERTAINAPMQGTAADIIKRAMIAVD 712

Query: 1056 K 1056
            +
Sbjct: 713  Q 713


>gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
 gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
          Length = 886

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +GR+H   L   T+TGRLS
Sbjct: 567  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRYLQDLTQTGRLS 626

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AFK
Sbjct: 627  SVDPNLQNIPIRLEQGRL-IRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFK 685

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D  A++RR AK +NF I 
Sbjct: 686  EGADIHTSTAMRVF-----------------GIEKP-----EDVTANDRRNAKAVNFGIV 723

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +  ++AK  +D ++     +  + E   +E++   +V TL  R R+ 
Sbjct: 724  YGISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKDYMERVVREAKDKGYVETLFKRRRQL 783

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + +         K+LLQV
Sbjct: 784  PDINSRQFNVRSFAERTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQV 838


>gi|303254143|ref|ZP_07340257.1| DNA polymerase I [Streptococcus pneumoniae BS455]
 gi|302598897|gb|EFL65929.1| DNA polymerase I [Streptococcus pneumoniae BS455]
          Length = 870

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 551  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 610

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 611  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 669

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 670  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 707

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 708  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 767

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 768  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 822


>gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069]
 gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069]
          Length = 915

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 140/257 (54%), Gaps = 27/257 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +S K GRVH S +     TGRLS+  PNLQN P   ++   IR AFIA  G+ ++ ADY 
Sbjct: 636  ISDKTGRVHTSYHQAIAATGRLSSTEPNLQNIPIKTEEGRSIRTAFIAPKGSKILAADYS 695

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  + +L AF+ G D HS TA  ++                   D P   
Sbjct: 696  QIELRIMAHLSQDEGLLKAFEEGLDVHSATAAEVF-------------------DVP--- 733

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             L +  +++RR AK +NF + YG +  GLA+        A+  ++ ++     V T+ E+
Sbjct: 734  -LDEVTSNQRRNAKAINFGLIYGMSAFGLAKQIDTDRNTAQDYINTYFARYPGVETYMES 792

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             K+++    +V TL GR    P I S    +R   ER AIN P+QGSAAD+   AMLE+ 
Sbjct: 793  TKEKAADLGYVETLYGRRLYLPEIHSKNGMRRKAAERTAINAPMQGSAADIIKLAMLEVD 852

Query: 1056 KNARLKEL-GWKLLLQV 1071
            K   LK++ G K+++QV
Sbjct: 853  K--WLKDVKGIKMIMQV 867


>gi|416892198|ref|ZP_11923628.1| DNA polymerase I [Aggregatibacter aphrophilus ATCC 33389]
 gi|347814962|gb|EGY31606.1| DNA polymerase I [Aggregatibacter aphrophilus ATCC 33389]
          Length = 502

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 153/294 (52%), Gaps = 32/294 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N  +    +E   + +    L E   +  L S +   LP     V+ + GRVH 
Sbjct: 179  KGAPSTNEDVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 232

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  +I ADY Q+ELRI+AHL
Sbjct: 233  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 292

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +N   +++AF  G D H  TA  ++                       +P L+   + +R
Sbjct: 293  SNDAGLINAFAQGKDIHRSTAAEIF----------------------GLP-LEQVTSEQR 329

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+R   +S  +A++ +DL++     V T+    +++++   +
Sbjct: 330  RNAKAINFGLIYGMSSFGLSRQLGISRADAQRYMDLYFQRYPGVQTFMHDIREKAKAQGY 389

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM+++ +  R
Sbjct: 390  VETLFGRRLYLPEINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEIMR 443


>gi|333395891|ref|ZP_08477708.1| DNA-directed DNA polymerase I [Lactobacillus coryniformis subsp.
            coryniformis KCTC 3167]
          Length = 888

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 154/292 (52%), Gaps = 32/292 (10%)

Query: 789  CDAISALCEVCSIDSLISNFILPLQGSNVSG-------KNGRVHCS-LNINTETGRLSAR 840
             + + A+  + S D L    +  LQ + + G        +G++H + L   T TGRLS+ 
Sbjct: 570  LEQLKAIAPIAS-DVLDYRGLTKLQSTYIDGLLKVIHPDDGKIHTTYLQTLTATGRLSSI 628

Query: 841  RPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
             PNLQN P  ++D  +IRQAF+    G  +  ADY Q+ELR+LAH+++ +++  AF  G 
Sbjct: 629  DPNLQNIPVRDEDGRQIRQAFVPRKAGWQIFAADYSQIELRVLAHISHDQNLQAAFSEGA 688

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H+ TAM ++             LE   E  P +          RR+AK +NF I YG 
Sbjct: 689  DIHASTAMRIFG------------LESAAEVTPNM----------RRQAKAVNFGIVYGI 726

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            +  GL+++  ++ ++AK  +D ++ E   V  + E     ++   +V TL  R R  P I
Sbjct: 727  SDYGLSQNLGITRKQAKTYIDSYFREYPNVKQYMEDIVAAAKKYGYVETLFHRRRYLPDI 786

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             S   + R+  ER A+NTP+QGSAAD+   AML + K  + ++L   +LLQV
Sbjct: 787  HSKNFNLRSFAERTAMNTPIQGSAADIIKVAMLNMQKALKEQQLQATMLLQV 838


>gi|387758412|ref|YP_006065390.1| DNA polymerase I [Streptococcus pneumoniae INV200]
 gi|418199190|ref|ZP_12835639.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47976]
 gi|419513664|ref|ZP_14053292.1| DNA polymerase I family protein [Streptococcus pneumoniae
            England14-9]
 gi|301801001|emb|CBW33665.1| DNA polymerase I [Streptococcus pneumoniae INV200]
 gi|353866778|gb|EHE46674.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47976]
 gi|379638154|gb|EIA02699.1| DNA polymerase I family protein [Streptococcus pneumoniae
            England14-9]
          Length = 877

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
 gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
          Length = 878

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/286 (34%), Positives = 149/286 (52%), Gaps = 35/286 (12%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPAL 850
            I  + E   I  L S ++  L+  NV   +G++H S N   T TGRLS+  PNLQN P  
Sbjct: 574  IEKIIEYRQITKLDSTYVEGLK--NVIDGDGKIHSSFNQTVTTTGRLSSTEPNLQNIPIK 631

Query: 851  EKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             +   +IR+ F+     S+I  ADY Q+ELRIL+H+A+ + ++DAFK   D H+ TA  +
Sbjct: 632  HEMGREIRKVFVPNNNESVIFSADYSQIELRILSHIADDEKLIDAFKHHKDIHTITASEV 691

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPV----PLLKDAFASERRKAKMLNFSIAYGKTPVGLA 965
            +                    K P+    PL+       R  AK +NF I YG     L+
Sbjct: 692  F--------------------KVPIDEVTPLM-------RSNAKAVNFGIVYGIGAFSLS 724

Query: 966  RDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRS 1025
            +D  VS +EAK+ +D +++    V  + +    ++ +D  V T+L R R  P I+S  + 
Sbjct: 725  KDINVSRKEAKEYIDTYFSRYPNVKKYIDEIISKAEVDGFVTTILNRKRYIPEIQSRNKI 784

Query: 1026 QRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             R   ER A+NTP+QGSAAD+   AM+E+    + + L   L+LQV
Sbjct: 785  VRGFGERLAMNTPIQGSAADIIKLAMVEVYNELKNRNLKSTLILQV 830


>gi|94971505|ref|YP_593553.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
 gi|94553555|gb|ABF43479.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
          Length = 929

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/252 (35%), Positives = 136/252 (53%), Gaps = 24/252 (9%)

Query: 821  NGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
             GR+H +     T TGRLS+  PNLQN P   +   +IR AF+A  GN L+ ADY Q+EL
Sbjct: 652  TGRLHTTFAQAATSTGRLSSVNPNLQNIPIRTELGREIRAAFVAEKGNVLLAADYSQIEL 711

Query: 880  RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
            R+LAH +  + ++DA+    D H+ TA  ++                     PP  ++ D
Sbjct: 712  RLLAHFSQDRLLVDAYNNDRDIHALTASEVF-------------------GVPP--MMID 750

Query: 940  AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
            A    RR+AK +NF I YG +P GL++   +  +E+K+ ++ ++     V  W  +  ++
Sbjct: 751  A--EHRRRAKAVNFGIVYGISPFGLSQQLGIDTKESKRYIESYFERYSGVREWLNSVLEQ 808

Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
             R D  V TL GR R  P I S   + R   ER A NTP+QG+AAD+   AM+ I ++  
Sbjct: 809  VRKDEKVSTLFGRIRPIPDIHSRNPNLRGFAERTATNTPLQGTAADLIKLAMIRIHRDLI 868

Query: 1060 LKELGWKLLLQV 1071
             ++L  ++LLQV
Sbjct: 869  ERKLKTRMLLQV 880


>gi|169833568|ref|YP_001693553.1| DNA polymerase I [Streptococcus pneumoniae Hungary19A-6]
 gi|419492205|ref|ZP_14031933.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47210]
 gi|421304016|ref|ZP_15754674.1| DNA polymerase [Streptococcus pneumoniae GA62331]
 gi|168996070|gb|ACA36682.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Hungary19A-6]
 gi|379595902|gb|EHZ60707.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47210]
 gi|395906407|gb|EJH17305.1| DNA polymerase [Streptococcus pneumoniae GA62331]
          Length = 877

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 159/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R  ++V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
            JL03]
 gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
            JL03]
          Length = 919

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 155/306 (50%), Gaps = 32/306 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++   ++ A +       L E   +  L S +   LPL    ++ K GRVH 
Sbjct: 595  KGAPSTNEEVL--DELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLM---INQKTGRVHT 649

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI+AHL
Sbjct: 650  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHL 709

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            AN + M+ AF  G D H  TA  ++    + V + Q                       R
Sbjct: 710  ANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ-----------------------R 746

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+    +S  +AKK ++ ++     V  +    ++ +    +
Sbjct: 747  RSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGY 806

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW 1065
            V TL GR    P IKS    +R   ER AIN P+QG+AAD+   AM+ I K  R  +   
Sbjct: 807  VETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDD-NI 865

Query: 1066 KLLLQV 1071
            K+++QV
Sbjct: 866  KMIMQV 871


>gi|381162421|ref|ZP_09871651.1| DNA polymerase I [Saccharomonospora azurea NA-128]
 gi|379254326|gb|EHY88252.1| DNA polymerase I [Saccharomonospora azurea NA-128]
          Length = 912

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 88/253 (34%), Positives = 142/253 (56%), Gaps = 25/253 (9%)

Query: 821  NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
            +GR+H +L+     TGRLS+  PNLQN P   ++  +IR AF+   G + L+ ADY Q+E
Sbjct: 634  DGRIHTTLHQTIAATGRLSSVEPNLQNIPVRTEEGRRIRDAFVVGEGYAELMTADYSQIE 693

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AHL+N ++++D+F++G DFH+ TA  ++      VE  +V  E             
Sbjct: 694  MRIMAHLSNDEALIDSFQSGFDFHASTAARVFD-----VEPTEVTGE------------- 735

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
                 +R K K +N+ +AYG +  GL++  ++S EEA+  +D ++     V  +  +   
Sbjct: 736  -----QRAKIKAMNYGLAYGLSAYGLSQQLRISTEEARALMDEYFLRFGGVRDYLHSVVD 790

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
             +  D +  T+ GR R  P + S  R +R   ER A+N P+QGSAAD+   AML + +  
Sbjct: 791  RAAKDGYTQTIFGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLGVHRAL 850

Query: 1059 RLKELGWKLLLQV 1071
              +EL  ++LLQV
Sbjct: 851  TAQELRSRVLLQV 863


>gi|418120159|ref|ZP_12757107.1| DNA polymerase I family protein [Streptococcus pneumoniae GA44194]
 gi|353794714|gb|EHD75066.1| DNA polymerase I family protein [Streptococcus pneumoniae GA44194]
          Length = 870

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 551  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 610

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 611  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 669

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 670  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 707

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 708  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 767

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 768  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 822


>gi|452975465|gb|EME75284.1| DNA polymerase I [Bacillus sonorensis L12]
          Length = 879

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 91/251 (36%), Positives = 144/251 (57%), Gaps = 25/251 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY Q+ELR
Sbjct: 604  KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSQKDWLIFAADYSQIELR 663

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH++  K++++AF    D H++TAM+++                H  ++   P +   
Sbjct: 664  VLAHISKDKNLIEAFTHDMDVHTKTAMDVF----------------HVSEEEVTPAM--- 704

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
                RR+AK +NF I YG +  GL+++  ++ +EA   ++ +++  Q V  + E   +E+
Sbjct: 705  ----RRQAKAVNFGIVYGISDYGLSQNLGITRKEAAAFIERYFHSFQGVKEYMEETVQEA 760

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P + S   + R+  ER A+NTP+QGSAAD+   AM+ +++  + 
Sbjct: 761  KQKGYVTTLLARRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIAMAEKLKE 820

Query: 1061 KELGWKLLLQV 1071
            K L  KLLLQV
Sbjct: 821  KNLQAKLLLQV 831


>gi|424897758|ref|ZP_18321332.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2297]
 gi|393181985|gb|EJC82024.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2297]
          Length = 1075

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 136/260 (52%), Gaps = 30/260 (11%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V  +  RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY 
Sbjct: 789  VHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 848

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A    +  AF+ G D H+ TA  M+         G  +    GE      
Sbjct: 849  QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------ 893

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E+
Sbjct: 894  --------VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMES 945

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
            RK  +R   +V T+ GR   +P I+S   S R   ERAAIN P+QGSAADV   AM+++ 
Sbjct: 946  RKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKME 1005

Query: 1056 KNARLKELGW----KLLLQV 1071
                L E G     ++LLQV
Sbjct: 1006 PA--LAEAGLADRVRMLLQV 1023



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 71/256 (27%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
           RD L       ED ++ KV  N  +D  +++ YG++   F  DTM ++ + D+     G 
Sbjct: 541 RDALPRLKALLEDAAVLKVAQNLKYDYLLMKRYGVETRSFD-DTMLISYVLDAG---TGA 596

Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
           + ++ L+                       E F+G   I  KD+ G         +GK +
Sbjct: 597 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 624

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + ++ R        Y+A D+  TL+L+  LK +L                +   Y+
Sbjct: 625 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRLT------------AAGLTSVYE 667

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
              +P   +L +ME  G+ VDR+ LS +     +  AR E E  V    ++         
Sbjct: 668 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 718

Query: 655 YMNVGSDTQLRQLLFG 670
             N+GS  QL  +LFG
Sbjct: 719 --NIGSPKQLGDILFG 732


>gi|365920203|ref|ZP_09444552.1| DNA-directed DNA polymerase [Cardiobacterium valvarum F0432]
 gi|364578420|gb|EHM55625.1| DNA-directed DNA polymerase [Cardiobacterium valvarum F0432]
          Length = 900

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 91/241 (37%), Positives = 127/241 (52%), Gaps = 24/241 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ + GR+H S +   T TGRLS+  PNLQN PA   +  +IRQAFIA  G  ++ ADY 
Sbjct: 621  VNPQTGRIHTSYHQAVTSTGRLSSSDPNLQNIPARSDEGRRIRQAFIAADGMQILAADYS 680

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+    +L AF  G D H  TA  ++    +AV   Q              
Sbjct: 681  QIELRIMAHLSADPGLLAAFARGDDIHRATAAEIFGVAPDAVSREQ-------------- 726

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR AK +NF + YG +  GLAR   +   +A   +D ++    +V  + EA
Sbjct: 727  ---------RRDAKAINFGLIYGMSAFGLARQLNIPRGQASDYIDTYFARYPKVRDYMEA 777

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             ++ +R   +V TLLGR    P I S    +R   ER AIN P+QGSAAD+   AML++ 
Sbjct: 778  TRETARRQGYVETLLGRRLYLPDINSKNPQRRQASERLAINAPMQGSAADIIKRAMLDLD 837

Query: 1056 K 1056
            +
Sbjct: 838  R 838


>gi|418086252|ref|ZP_12723425.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47033]
 gi|421244930|ref|ZP_15701431.1| DNA polymerase I [Streptococcus pneumoniae 2081685]
 gi|353760311|gb|EHD40888.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47033]
 gi|395609430|gb|EJG69517.1| DNA polymerase I [Streptococcus pneumoniae 2081685]
          Length = 870

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 551  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 610

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 611  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 669

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 670  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 707

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 708  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 767

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 768  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 822


>gi|148996437|ref|ZP_01824155.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|168576933|ref|ZP_02722775.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225860073|ref|YP_002741582.1| DNA polymerase I [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230353|ref|ZP_06964034.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255493|ref|ZP_06979079.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501821|ref|YP_003723761.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|387787236|ref|YP_006252304.1| DNA polymerase I [Streptococcus pneumoniae ST556]
 gi|417311628|ref|ZP_12098345.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04375]
 gi|418081943|ref|ZP_12719145.1| DNA polymerase I family protein [Streptococcus pneumoniae GA44288]
 gi|418084134|ref|ZP_12721322.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47281]
 gi|418092897|ref|ZP_12730029.1| DNA polymerase I family protein [Streptococcus pneumoniae GA49138]
 gi|418099625|ref|ZP_12736714.1| DNA polymerase I family protein [Streptococcus pneumoniae 7286-06]
 gi|418140641|ref|ZP_12777457.1| DNA polymerase I family protein [Streptococcus pneumoniae GA13455]
 gi|418149614|ref|ZP_12786370.1| DNA polymerase I family protein [Streptococcus pneumoniae GA14798]
 gi|418170265|ref|ZP_12806896.1| DNA polymerase I family protein [Streptococcus pneumoniae GA19451]
 gi|418194847|ref|ZP_12831328.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47688]
 gi|418201324|ref|ZP_12837759.1| DNA polymerase I family protein [Streptococcus pneumoniae GA52306]
 gi|418222345|ref|ZP_12848991.1| DNA polymerase I family protein [Streptococcus pneumoniae 5185-06]
 gi|419426239|ref|ZP_13966425.1| DNA polymerase I family protein [Streptococcus pneumoniae 5652-06]
 gi|419428315|ref|ZP_13968490.1| DNA polymerase I family protein [Streptococcus pneumoniae GA11856]
 gi|419434949|ref|ZP_13975047.1| DNA polymerase I family protein [Streptococcus pneumoniae 8190-05]
 gi|419437091|ref|ZP_13977168.1| DNA polymerase I family protein [Streptococcus pneumoniae GA13499]
 gi|419443695|ref|ZP_13983710.1| DNA polymerase I family protein [Streptococcus pneumoniae GA19923]
 gi|419447960|ref|ZP_13987958.1| DNA polymerase I family protein [Streptococcus pneumoniae 4075-00]
 gi|419450042|ref|ZP_13990032.1| DNA polymerase I family protein [Streptococcus pneumoniae EU-NP02]
 gi|419470075|ref|ZP_14009937.1| DNA polymerase I family protein [Streptococcus pneumoniae GA07914]
 gi|419500807|ref|ZP_14040494.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47628]
 gi|419502937|ref|ZP_14042613.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47760]
 gi|419517870|ref|ZP_14057480.1| DNA polymerase I family protein [Streptococcus pneumoniae GA08825]
 gi|421237506|ref|ZP_15694081.1| DNA polymerase I [Streptococcus pneumoniae 2071247]
 gi|421284753|ref|ZP_15735531.1| DNA polymerase [Streptococcus pneumoniae GA60190]
 gi|421286568|ref|ZP_15737335.1| DNA polymerase [Streptococcus pneumoniae GA58771]
 gi|147757012|gb|EDK64051.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|183577415|gb|EDT97943.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225728406|gb|ACO24257.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237416|gb|ADI68547.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|327390446|gb|EGE88786.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04375]
 gi|353757380|gb|EHD37973.1| DNA polymerase I family protein [Streptococcus pneumoniae GA44288]
 gi|353760437|gb|EHD41013.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47281]
 gi|353767830|gb|EHD48360.1| DNA polymerase I family protein [Streptococcus pneumoniae GA49138]
 gi|353773624|gb|EHD54119.1| DNA polymerase I family protein [Streptococcus pneumoniae 7286-06]
 gi|353808832|gb|EHD89096.1| DNA polymerase I family protein [Streptococcus pneumoniae GA13455]
 gi|353817756|gb|EHD97956.1| DNA polymerase I family protein [Streptococcus pneumoniae GA14798]
 gi|353839054|gb|EHE19129.1| DNA polymerase I family protein [Streptococcus pneumoniae GA19451]
 gi|353862966|gb|EHE42895.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47688]
 gi|353869986|gb|EHE49863.1| DNA polymerase I family protein [Streptococcus pneumoniae GA52306]
 gi|353881433|gb|EHE61246.1| DNA polymerase I family protein [Streptococcus pneumoniae 5185-06]
 gi|379136978|gb|AFC93769.1| DNA polymerase I [Streptococcus pneumoniae ST556]
 gi|379542032|gb|EHZ07196.1| DNA polymerase I family protein [Streptococcus pneumoniae GA13499]
 gi|379548557|gb|EHZ13688.1| DNA polymerase I family protein [Streptococcus pneumoniae GA07914]
 gi|379554519|gb|EHZ19596.1| DNA polymerase I family protein [Streptococcus pneumoniae GA11856]
 gi|379571388|gb|EHZ36345.1| DNA polymerase I family protein [Streptococcus pneumoniae GA19923]
 gi|379603052|gb|EHZ67821.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47628]
 gi|379610311|gb|EHZ75042.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47760]
 gi|379617472|gb|EHZ82160.1| DNA polymerase I family protein [Streptococcus pneumoniae 8190-05]
 gi|379619896|gb|EHZ84563.1| DNA polymerase I family protein [Streptococcus pneumoniae 5652-06]
 gi|379624772|gb|EHZ89400.1| DNA polymerase I family protein [Streptococcus pneumoniae 4075-00]
 gi|379626073|gb|EHZ90697.1| DNA polymerase I family protein [Streptococcus pneumoniae EU-NP02]
 gi|379642083|gb|EIA06615.1| DNA polymerase I family protein [Streptococcus pneumoniae GA08825]
 gi|395605484|gb|EJG65611.1| DNA polymerase I [Streptococcus pneumoniae 2071247]
 gi|395888673|gb|EJG99684.1| DNA polymerase [Streptococcus pneumoniae GA60190]
 gi|395890827|gb|EJH01830.1| DNA polymerase [Streptococcus pneumoniae GA58771]
          Length = 877

 Score =  153 bits (387), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
 gi|111656974|ref|ZP_01407784.1| hypothetical protein SpneT_02001792 [Streptococcus pneumoniae TIGR4]
 gi|418129240|ref|ZP_12766124.1| DNA polymerase I family protein [Streptococcus pneumoniae GA07643]
 gi|418228774|ref|ZP_12855385.1| DNA polymerase I family protein [Streptococcus pneumoniae EU-NP01]
 gi|421241865|ref|ZP_15698397.1| DNA polymerase I [Streptococcus pneumoniae 2081074]
 gi|421246209|ref|ZP_15702700.1| DNA polymerase I [Streptococcus pneumoniae 2082170]
 gi|421269475|ref|ZP_15720332.1| DNA polymerase I family protein [Streptococcus pneumoniae SPAR48]
 gi|27734651|sp|P59199.1|DPO1_STRPN RecName: Full=DNA polymerase I; Short=POL I
 gi|14971495|gb|AAK74222.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
 gi|353802532|gb|EHD82824.1| DNA polymerase I family protein [Streptococcus pneumoniae GA07643]
 gi|353891212|gb|EHE70968.1| DNA polymerase I family protein [Streptococcus pneumoniae EU-NP01]
 gi|395612291|gb|EJG72335.1| DNA polymerase I [Streptococcus pneumoniae 2081074]
 gi|395616328|gb|EJG76339.1| DNA polymerase I [Streptococcus pneumoniae 2082170]
 gi|395870127|gb|EJG81240.1| DNA polymerase I family protein [Streptococcus pneumoniae SPAR48]
          Length = 877

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|421490249|ref|ZP_15937623.1| DNA-directed DNA polymerase [Streptococcus anginosus SK1138]
 gi|400373654|gb|EJP26582.1| DNA-directed DNA polymerase [Streptococcus anginosus SK1138]
          Length = 881

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 156/295 (52%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L     I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 562  AVDVLERLAPTAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRYLQDLTQTGRLS 621

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    NS++++ DY Q+ELR+LAH++  + +++AF+
Sbjct: 622  SVDPNLQNIPIRLEQGRL-IRKAFVPEWENSVLLSSDYSQIELRVLAHISGDEHLIEAFR 680

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D   ++RR AK +NF + 
Sbjct: 681  HGADIHTSTAMRVF-----------------GIEKP-----EDVTPNDRRNAKAVNFGVV 718

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GLA +  +S +EAK  +D ++     +  + E   +E+R   +V TL  R R  
Sbjct: 719  YGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRREI 778

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+ + +         ++LLQV
Sbjct: 779  PDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALIDGNFKTRMLLQV 833


>gi|393774005|ref|ZP_10362387.1| DNA polymerase I [Novosphingobium sp. Rr 2-17]
 gi|392720591|gb|EIZ78074.1| DNA polymerase I [Novosphingobium sp. Rr 2-17]
          Length = 956

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/311 (32%), Positives = 153/311 (49%), Gaps = 35/311 (11%)

Query: 768  YKGAVASNNKIFATEQE-----AREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNG 822
            YKG     +  ++T+Q      A +     S + E   +  L S +   LQ + ++   G
Sbjct: 622  YKGGRKGKSGQYSTDQAILEGLAGQGAVVASKVLEWRQLSKLRSTYTEALQAA-INPATG 680

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S + +  +TGRLS+  PNLQN P   +   +IR  F+A PGN L+ ADY Q+ELR+
Sbjct: 681  RVHTSYSLVGAQTGRLSSTDPNLQNIPIRTEIGRQIRHCFVAEPGNVLLAADYSQIELRL 740

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
             AH+A+  S+ +AF AG D HSRTAM M+  +                            
Sbjct: 741  AAHMADVPSLKEAFAAGEDIHSRTAMEMFGTVDR-------------------------- 774

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               R +AK +NF+I YG +  GLA       +EA+  +D ++     +  +     +  R
Sbjct: 775  -DTRGRAKTINFAILYGISRWGLAGRLGTEADEAQAMIDRYFERFPGIQRYIHETLESVR 833

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +  TL GR   FP I S  +++R   ERAAIN P+QG++AD+   AM  ++      
Sbjct: 834  AKGYSETLFGRKTWFPRITSKNQAERQGSERAAINAPIQGTSADIIKRAMARMNPALAQA 893

Query: 1062 ELGW-KLLLQV 1071
             LG  ++LLQV
Sbjct: 894  GLGHVRMLLQV 904


>gi|414563125|ref|YP_006042086.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus ATCC 35246]
 gi|338846190|gb|AEJ24402.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus ATCC 35246]
          Length = 886

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 157/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I + I ++  I  LQ + V G       +GR+H   L   T+TGRLS
Sbjct: 567  AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRYLQDLTQTGRLS 626

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF     ++++++ DY Q+ELR+LAH++  + ++ AFK
Sbjct: 627  SVDPNLQNIPIRLEQGRL-IRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFK 685

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G +KP     +D  A++RR AK +NF I 
Sbjct: 686  EGADIHTSTAMRVF-----------------GIEKP-----EDVTANDRRNAKAVNFGIV 723

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +  ++AK  +D ++     +  + E   +E++   +V TL  R R  
Sbjct: 724  YGISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETLFKRRREL 783

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R+  ER AIN+P+QGSAAD+   AM+ + +         K+LLQV
Sbjct: 784  PDINSRQFNVRSFAERTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQV 838


>gi|417788013|ref|ZP_12435696.1| DNA polymerase I [Lactobacillus salivarius NIAS840]
 gi|334308190|gb|EGL99176.1| DNA polymerase I [Lactobacillus salivarius NIAS840]
          Length = 892

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/257 (35%), Positives = 143/257 (55%), Gaps = 24/257 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            VS  +G+ H       T TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  +DY
Sbjct: 610  VSKTDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDY 669

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  K+M +AFK G D H+ TAM ++                   D P  
Sbjct: 670  SQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIF-----------------NVDSPD- 711

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                +   + RR+AK +NF I YG +  GL+++  +S ++AK+ +D + +    V  + E
Sbjct: 712  ----EVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYME 767

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + ++ + +V T+  R R  P IKS   + R+  ER A+N+P+QGSAAD+   AM+ +
Sbjct: 768  KIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINM 827

Query: 1055 SKNARLKELGWKLLLQV 1071
             +  + K L  K+LLQV
Sbjct: 828  QEMLKEKNLQAKMLLQV 844


>gi|303260668|ref|ZP_07346631.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|303263159|ref|ZP_07349082.1| DNA polymerase I [Streptococcus pneumoniae BS397]
 gi|303269472|ref|ZP_07355239.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|418179425|ref|ZP_12816000.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41688]
 gi|421295324|ref|ZP_15746039.1| DNA polymerase [Streptococcus pneumoniae GA58581]
 gi|302638198|gb|EFL68670.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|302641006|gb|EFL71386.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|302646932|gb|EFL77156.1| DNA polymerase I [Streptococcus pneumoniae BS397]
 gi|353846847|gb|EHE26874.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41688]
 gi|395897393|gb|EJH08352.1| DNA polymerase [Streptococcus pneumoniae GA58581]
          Length = 877

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|222151604|ref|YP_002560760.1| DNA polymerase I [Macrococcus caseolyticus JCSC5402]
 gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
          Length = 875

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/274 (34%), Positives = 145/274 (52%), Gaps = 27/274 (9%)

Query: 800  SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIR 858
            ++  L S ++  LQ   + G + ++H   N +  +TGRLS+  PNLQN P    +  KIR
Sbjct: 579  TLSKLQSTYVEGLQ--KLIGDDDKIHTRFNQVIAQTGRLSSIDPNLQNIPVRLDEGRKIR 636

Query: 859  QAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAV 917
            +AF+    NS+I  ADY Q+ELR+LAH+   K ML+AF  G D H++TAM ++   R  V
Sbjct: 637  KAFVPSEPNSVIFAADYSQIELRVLAHITGDKGMLEAFNQGIDIHTKTAMKVFNVEREEV 696

Query: 918  ETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKK 977
             +                         RR+AK +NF I YG +  GL++   ++ ++A+ 
Sbjct: 697  TSDM-----------------------RRQAKAVNFGIVYGISDYGLSQSLGITRKDAQA 733

Query: 978  TVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINT 1037
             +D +     +V  +     +E++   +V TLL R R  P I S   + R   ER A+NT
Sbjct: 734  FIDNYLESFPDVKAYMHDIIQEAKQQGYVTTLLNRRRYIPDITSRNFNLRGFAERTAMNT 793

Query: 1038 PVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P+QGSAAD+   AM+  ++  +  +   KLLLQV
Sbjct: 794  PIQGSAADIIKLAMVHYNEQVKETDFKAKLLLQV 827


>gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
 gi|226693519|sp|Q59156.2|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I
 gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 141/261 (54%), Gaps = 26/261 (9%)

Query: 812  LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            LQ  N S   GRVH + +   T TGRL++  PNLQN P    +   IR+ F+   G+ LI
Sbjct: 567  LQAINPSS--GRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLI 624

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
             ADY Q+ELRILAH++  + ++ AFK   D HS+TA  ++                 G D
Sbjct: 625  DADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVF-----------------GVD 667

Query: 931  KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
                  + D     R +AK +NF I YG +  GLARD K+S +EA + ++ ++    +V 
Sbjct: 668  ------IADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVK 721

Query: 991  TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
             + +   K +R +  V TL  R R    IKS  R+ R + ER A+N+P+QGSAAD+   A
Sbjct: 722  EYLDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLA 781

Query: 1051 MLEISKNARLKELGWKLLLQV 1071
            M+++ +  +   L  K++LQV
Sbjct: 782  MIKVYQKLKENNLKSKIILQV 802


>gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
 gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
          Length = 951

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 157/304 (51%), Gaps = 29/304 (9%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-L 828
            G  A++  I    Q+ +   + I  + +   +  L S ++ PL        +GRVH S +
Sbjct: 627  GQYATSEDIL---QQHKNDHEIIPCILDYRQMKKLKSTYVDPLPTMK-DPVDGRVHTSYM 682

Query: 829  NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLAN 887
               T TGRLS+  PNLQN P   +   +IR+AFIA   +  L+ ADY Q+ELRI+A LA+
Sbjct: 683  QTVTATGRLSSNNPNLQNIPIRSERGKEIRRAFIARSKDFQLMSADYSQIELRIIAALAD 742

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
              +M+ AFK   D H  TA  ++ H+                       L D    +R  
Sbjct: 743  DTNMIQAFKDKVDIHRATAAKVF-HVE----------------------LDDVTKDQRSA 779

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YG++  GL+++  +S  EAK+ +D ++ +   + T+ +   K++R + +V 
Sbjct: 780  AKAVNFGIIYGQSAFGLSQNLGISRTEAKQIIDSYFAQYSTIKTYMDNAVKDARENGYVE 839

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T++ R R  P I S     R   ER A+N P+QGSAAD+   AM+ + K  +  ++  K+
Sbjct: 840  TIMQRRRYLPDINSANAVVRGFAERNAVNAPIQGSAADIVKLAMVAVDKAMKKAKVKSKM 899

Query: 1068 LLQV 1071
            +LQV
Sbjct: 900  ILQV 903



 Score = 47.8 bits (112), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 29/43 (67%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTM 466
           +++EF PFFE  SI+K+ HN  +D  VL  YG++ +G   DTM
Sbjct: 423 IVDEFKPFFEHKSIEKIAHNMKYDIQVLHRYGVQFAGPLFDTM 465


>gi|303260832|ref|ZP_07346781.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
 gi|302637669|gb|EFL68155.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
          Length = 887

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|194397391|ref|YP_002036753.1| DNA polymerase I [Streptococcus pneumoniae G54]
 gi|419531342|ref|ZP_14070862.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47794]
 gi|194357058|gb|ACF55506.1| DNA polymerase I [Streptococcus pneumoniae G54]
 gi|379609668|gb|EHZ74405.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47794]
          Length = 877

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|417810605|ref|ZP_12457284.1| DNA polymerase I [Lactobacillus salivarius GJ-24]
 gi|335349401|gb|EGM50901.1| DNA polymerase I [Lactobacillus salivarius GJ-24]
          Length = 892

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/257 (35%), Positives = 143/257 (55%), Gaps = 24/257 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADY 874
            VS  +G+ H       T TGRLS+  PNLQN P   ++  KIRQAF+ + PG  +  +DY
Sbjct: 610  VSKTDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDY 669

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH++  K+M +AFK G D H+ TAM ++                   D P  
Sbjct: 670  SQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIF-----------------NVDSPD- 711

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
                +   + RR+AK +NF I YG +  GL+++  +S ++AK+ +D + +    V  + E
Sbjct: 712  ----EVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYME 767

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               + ++ + +V T+  R R  P IKS   + R+  ER A+N+P+QGSAAD+   AM+ +
Sbjct: 768  KIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINM 827

Query: 1055 SKNARLKELGWKLLLQV 1071
             +  + K L  K+LLQV
Sbjct: 828  QEMLKEKNLQAKMLLQV 844


>gi|148985374|ref|ZP_01818579.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|387756628|ref|YP_006063607.1| DNA polymerase I [Streptococcus pneumoniae OXC141]
 gi|147922332|gb|EDK73452.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|301799217|emb|CBW31733.1| DNA polymerase I [Streptococcus pneumoniae OXC141]
 gi|429318605|emb|CCP31787.1| DNA polymerase I [Streptococcus pneumoniae SPN034183]
 gi|429320425|emb|CCP33772.1| DNA polymerase I [Streptococcus pneumoniae SPN994039]
 gi|429322245|emb|CCP29813.1| DNA polymerase I [Streptococcus pneumoniae SPN994038]
          Length = 877

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|392423186|ref|YP_006459790.1| DNA polymerase I [Pseudomonas stutzeri CCUG 29243]
 gi|390985374|gb|AFM35367.1| DNA polymerase I [Pseudomonas stutzeri CCUG 29243]
          Length = 914

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 138/263 (52%), Gaps = 27/263 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LP Q   ++ + GR+H S +   T TGRLS+  PNLQN P    +  +IRQAF+A PG  
Sbjct: 630  LPQQ---INPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYK 686

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            L+ ADY Q+ELRI+AHLA    +L AF+   D H  TA  ++                  
Sbjct: 687  LLAADYSQIELRIMAHLAQDAGLLHAFQNDLDVHRATAAEVFG----------------- 729

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                 VPL +   + +RR AK +NF + YG +  GLA+   V  +EA++ +D ++     
Sbjct: 730  -----VPL-EQVSSDQRRSAKAINFGLIYGMSAFGLAKQIDVGRKEAQEYIDRYFARYPG 783

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E  + ++    +V TL GR    P I S   + R   ER AIN P+QG+AAD+  
Sbjct: 784  VLAYMERTRTQAAEQGYVETLFGRRLYLPEINSKNGAMRKGAERTAINAPMQGTAADIIK 843

Query: 1049 CAMLEISKNARLKELGWKLLLQV 1071
             AM+ +    +   L  +++LQV
Sbjct: 844  RAMIAVDGWLQQSGLDARVILQV 866


>gi|418163386|ref|ZP_12800062.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17371]
 gi|419424109|ref|ZP_13964313.1| DNA polymerase I family protein [Streptococcus pneumoniae 7533-05]
 gi|419527058|ref|ZP_14066605.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17719]
 gi|421313019|ref|ZP_15763613.1| DNA polymerase [Streptococcus pneumoniae GA47562]
 gi|353832812|gb|EHE12924.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17371]
 gi|379568221|gb|EHZ33201.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17719]
 gi|379621527|gb|EHZ86172.1| DNA polymerase I family protein [Streptococcus pneumoniae 7533-05]
 gi|395914990|gb|EJH25830.1| DNA polymerase [Streptococcus pneumoniae GA47562]
          Length = 877

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8]
          Length = 876

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/259 (37%), Positives = 150/259 (57%), Gaps = 29/259 (11%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY
Sbjct: 595  VHPDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADY 654

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 655  SQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIF-HVSE------------------- 694

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF + YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 695  ---EEVTATMRRQAKAVNFGVVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKRYME 751

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 752  TIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 811

Query: 1055 SKNARLKE--LGWKLLLQV 1071
            +  ARLKE  L  +LLLQV
Sbjct: 812  A--ARLKEERLQARLLLQV 828


>gi|338983099|ref|ZP_08632330.1| DNA polymerase I [Acidiphilium sp. PM]
 gi|338207974|gb|EGO95880.1| DNA polymerase I [Acidiphilium sp. PM]
          Length = 915

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/250 (37%), Positives = 133/250 (53%), Gaps = 24/250 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S +   T TGRLS+  PNLQN P    +  +IR+AFIA PG +LI ADY Q+ELR+
Sbjct: 641  RVHTSFSQAITTTGRLSSNEPNLQNIPIRTSEGARIRRAFIAAPGKALISADYSQIELRL 700

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+  ++ ++F  G D H+RTA  ++             L   G D    P++    
Sbjct: 701  LAHVADIPALKESFAKGEDIHARTAAEVFG------------LPMEGMD----PMV---- 740

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
               RR+AK +NF I YG +  GLAR   +   EAK+ +D ++    E+  +     + +R
Sbjct: 741  ---RRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARYPEIRRYMNETAEFAR 797

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
               +V T  GR    P I     ++R + ER AIN P+QG AAD+   AM+ +    R  
Sbjct: 798  THGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADIIKRAMVRLPAAIRDV 857

Query: 1062 ELGWKLLLQV 1071
             L   +LLQV
Sbjct: 858  GLDAVMLLQV 867



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 18/133 (13%)

Query: 371 ACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDL-----L 425
           A DTE   ++ +      H +++  S+ + P      G++  ++ L    G  L     L
Sbjct: 343 AIDTETTGLNPR------HAKLVGISVATAP------GRAA-YIPLGHEVGPQLPRPLAL 389

Query: 426 NEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLE 485
              AP   DPSI K++HN  FD HVLE  GL  +    DTM M+    + R   G   L 
Sbjct: 390 ERLAPVLADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELS 449

Query: 486 ALTGDRKVMSEDK 498
           AL  D + +S D+
Sbjct: 450 ALHLDHRPISYDE 462


>gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|340783454|ref|YP_004750061.1| DNA polymerase I [Acidithiobacillus caldus SM-1]
 gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|340557605|gb|AEK59359.1| DNA polymerase I [Acidithiobacillus caldus SM-1]
          Length = 894

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/274 (35%), Positives = 139/274 (50%), Gaps = 24/274 (8%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +  + GRVH   +     TGRLS+  PNLQN P       +IRQAF+A PG+ LI ADY 
Sbjct: 612  IQERTGRVHTHYHQAVAATGRLSSSDPNLQNIPVRSDLGRRIRQAFVAEPGHLLISADYS 671

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+    +  AF  G D H  TA  ++     A+   QV  E          
Sbjct: 672  QIELRIMAHLSGDAGLRQAFARGLDIHRATAAEVF-----AIPLEQVTPE---------- 716

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                    +RR AK +NF + YG+TP GLA+   V   EAK  ++ ++     V  + E 
Sbjct: 717  --------QRRAAKAINFGLIYGQTPYGLAQQLGVGQGEAKAYMERYFERYPGVREYMEN 768

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             ++ +R   +V TL GR    P I+S   ++RN+ ERAAIN P+QG+AAD+   AM+ + 
Sbjct: 769  TRRLARQQGYVETLFGRRLYLPEIRSQNPARRNYAERAAINAPMQGTAADLIKLAMIAVD 828

Query: 1056 KNARLKELGWKLLLQVLFFFSFSFFSIIVIVSCQ 1089
                 +    ++LLQV            V  +CQ
Sbjct: 829  AWLLAQTDHGRMLLQVHDELILEVPEKAVDAACQ 862


>gi|253987782|ref|YP_003039138.1| dna polymerase I polA [Photorhabdus asymbiotica]
 gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica
            ATCC 43949]
 gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica]
          Length = 929

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 88/233 (37%), Positives = 128/233 (54%), Gaps = 24/233 (10%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  ++ ADY Q+ELRI
Sbjct: 655  RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIASEGYRIMAADYSQIELRI 714

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            +AHL+  + +L AF  G D H  TA  ++                   D P    L+   
Sbjct: 715  MAHLSQDQGLLKAFAEGQDIHRATAAEVF-------------------DVP----LEQVT 751

Query: 942  ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
            + +RR AK +NF + YG +  GL+R   +   EA++ +DL++     VL + E  ++++ 
Sbjct: 752  SEQRRSAKAINFGLIYGMSAFGLSRQLGIPRGEAQRYMDLYFERYPGVLAYMERTREQAE 811

Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +V TL GR    P IKS   ++R   ER AIN P+QG+AAD+   AM+ +
Sbjct: 812  EQGYVETLAGRRLYLPDIKSRNGTRRKAAEREAINAPMQGTAADIIKKAMIAV 864


>gi|374328706|ref|YP_005078890.1| DNA polymerase I [Pseudovibrio sp. FO-BEG1]
 gi|359341494|gb|AEV34868.1| DNA polymerase I [Pseudovibrio sp. FO-BEG1]
          Length = 980

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 136/258 (52%), Gaps = 24/258 (9%)

Query: 815  SNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
            S ++ + GRVH S ++ +T TGRLS+  PN+QN P    +  KIRQAFIA  G  LI AD
Sbjct: 694  SFINQETGRVHTSFSLASTSTGRLSSSEPNIQNIPIRTSEGRKIRQAFIAEKGKKLISAD 753

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELR+LAH+A+   +  AF  G D H+ TA  M+             +   G D   
Sbjct: 754  YSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMFG------------VPIEGMD--- 798

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
             P++       RR+AK +NF I YG +  GLA    ++  EA   +  ++     +  + 
Sbjct: 799  -PMV-------RRRAKAINFGIIYGISAFGLANQLGIARGEAGDYIKTYFERFPGIKDYM 850

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E  KK    + +V T+ GR   +P + +   + R   ERAAIN P+QGSAAD+   AM+ 
Sbjct: 851  EETKKFVHANGYVETIFGRRAHYPDVNTKNPNMRQFYERAAINAPIQGSAADIIRRAMVR 910

Query: 1054 ISKNARLKELGWKLLLQV 1071
            + +      +  ++LLQV
Sbjct: 911  MDEVLETANMDAQMLLQV 928



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 105/249 (42%), Gaps = 59/249 (23%)

Query: 430 PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
           P  EDP++ K+  N  +D  VL+ YG++++ F  DTM ++   D+     GG  ++ L+ 
Sbjct: 456 PMLEDPAVLKIAQNMKYDWLVLKRYGVEMAPFD-DTMLLSYALDAGM---GGNGMDELS- 510

Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
            ++ ++     +++    G +      +IS    F +  L K                  
Sbjct: 511 -QRWLNHTPIPFKEVCGSGKS------QIS----FDKVPLDKA----------------- 542

Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
                  +Y+A D+  TL+L+K LK +L              + M   Y+   +P    L
Sbjct: 543 ------TAYAAEDADVTLRLWKILKPRL------------AAEEMTVVYERLERPMVATL 584

Query: 610 VKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
            KME  G+ +DR+ LS +        E A    R  +  H    +  NVGS  QL ++LF
Sbjct: 585 AKMERRGISIDRQMLSLLSG------EFAQGAARLESEIHDVAGEIFNVGSPKQLGEILF 638

Query: 670 G--GKPNSK 676
           G  G P  K
Sbjct: 639 GKMGLPGGK 647


>gi|418196954|ref|ZP_12833421.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47778]
 gi|353866069|gb|EHE45973.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47778]
          Length = 852

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 533  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 592

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 593  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 651

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 652  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 689

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 690  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 749

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 750  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 804


>gi|350569655|ref|ZP_08938051.1| DNA-directed DNA polymerase I [Propionibacterium avidum ATCC 25577]
 gi|348660473|gb|EGY77183.1| DNA-directed DNA polymerase I [Propionibacterium avidum ATCC 25577]
          Length = 915

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 146/255 (57%), Gaps = 29/255 (11%)

Query: 821  NGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GRVH + +     TGRLS++ PNLQN P   ++  +IR+ F+   G  SL+ ADY Q+E
Sbjct: 637  DGRVHTTYMQTIAATGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYGSLMSADYSQIE 696

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AH++  +S++DAF++G DFH+ TA +++                        P  +
Sbjct: 697  MRIMAHVSGDQSLIDAFRSGQDFHTVTASHVF---------------------GVAP--E 733

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
            D   ++R K K +N+ +AYG +  GL+   KVSV EAK+ +  +++   +V  + E    
Sbjct: 734  DVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSIFGKVHEYLEEVVD 793

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +  TLLGR R  P + S  R +R   ERAA+N P+QGSAAD+   AML  + + 
Sbjct: 794  QARRQGYTETLLGRRRYLPDLTSTNRQRREMAERAALNAPIQGSAADLIKLAML--ATDE 851

Query: 1059 RLKELGW--KLLLQV 1071
            +L E G   ++LLQV
Sbjct: 852  KLDEAGLTSRVLLQV 866


>gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873]
 gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873]
          Length = 881

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 156/291 (53%), Gaps = 27/291 (9%)

Query: 783  QEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARR 841
            ++ +++   IS + +   I  L S ++  L+  +V  ++G++H S N   T TGRLS+  
Sbjct: 568  EKLKDSHPIISKIIDYRQITKLDSTYVEGLK--HVIDEDGKIHSSFNQTVTTTGRLSSTE 625

Query: 842  PNLQNQPALEKDRYKIRQAFIAVPGNSLIV-ADYGQLELRILAHLANCKSMLDAFKAGGD 900
            PNLQN P   +   +IR+ F+A    S+I  ADY Q+ELR+LAH+AN + ++DAFK   D
Sbjct: 626  PNLQNIPIKHEMGREIRKVFVANNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHHKD 685

Query: 901  FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
             H+ TA  ++   R  VE                PL+       R  AK +NF I YG  
Sbjct: 686  IHTITASEVF---RVPVE-------------EVTPLM-------RSNAKAVNFGIVYGIG 722

Query: 961  PVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIK 1020
               L++D  VS +EAK+ +D +++    V  + +    +S  D  V T++ R R  P I+
Sbjct: 723  AFSLSKDINVSRKEAKEYIDTYFSRYPNVKKYIDDIINKSEQDGFVTTIMNRKRYIPEIQ 782

Query: 1021 SLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            S  R  R+  ER A+NTP+QGSAAD+   AM+ + +    + L   L+LQV
Sbjct: 783  SRNRIVRSFGERLAMNTPIQGSAADIIKLAMVHVYEELIKRNLKSTLILQV 833


>gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
 gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
          Length = 914

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 139/256 (54%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ + GRVH +       TGRL++  PNLQN P   ++  +IR+AFIA PGN +I ADY 
Sbjct: 634  VNPETGRVHTNYAQAVAVTGRLASNDPNLQNIPIRSEEGRRIREAFIASPGNKIISADYS 693

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL++  S+L AF  G D H  TA  ++                   D  P+ 
Sbjct: 694  QIELRIMAHLSDDASLLKAFHDGQDVHRATASEIF-------------------DITPLE 734

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
            +  D    +RR AK++NF + YG +  G+A +  +S  +AK  +D ++     V  + + 
Sbjct: 735  VTSD----QRRYAKVINFGLIYGMSAFGVASNLGISRTDAKNYIDRYFERYPGVARYMDE 790

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             ++ +R   +V T+ GR    P I S    +R   ERAAIN P+QG+AAD+   +M+ + 
Sbjct: 791  TRQLAREQGYVETVFGRRLWLPEINSPNGPRRQAAERAAINAPMQGTAADIIKLSMIAVQ 850

Query: 1056 KNARLKELGWKLLLQV 1071
                 ++L  KL++QV
Sbjct: 851  DWLEKEKLDSKLIMQV 866



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 56/246 (22%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L++  P+ E+P   KV  N  +D+HVL NYG+++ G   DT+  + + +S RR    + 
Sbjct: 388 VLDKLKPWLENPKKHKVGQNLKYDSHVLANYGIRLQGIVHDTLLESYVLESHRR----HD 443

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           +++L+   + +     +Y     KG +  GF                 D  A  ++T   
Sbjct: 444 MDSLS--ERFLDYKPVSYTDICGKGASQIGF-----------------DEIAIDVAT--- 481

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
                         Y+A D+  TL+L++S+  +L E     DG       +   Y++   
Sbjct: 482 -------------HYAAEDADVTLQLHQSMWPRLKEN----DG-------LRFIYEKIEI 517

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
           P   +L KME  G+L+D      ++K+    +E  V       + +    +  N+ S  Q
Sbjct: 518 PTSIVLQKMERNGVLID------VDKLNVQSRELGVKMDSLQENAYVTAGQPFNLNSPKQ 571

Query: 664 LRQLLF 669
           L +LLF
Sbjct: 572 LGELLF 577


>gi|406670271|ref|ZP_11077523.1| DNA polymerase I [Facklamia ignava CCUG 37419]
 gi|405579578|gb|EKB53673.1| DNA polymerase I [Facklamia ignava CCUG 37419]
          Length = 887

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 156/294 (53%), Gaps = 32/294 (10%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            + D +  L     I  LI ++  +  LQG+ + G       +G++H   +   T+TGRLS
Sbjct: 569  SADVLEKLQHQHPIIELILDYRQLNKLQGTYLIGLQDYIQADGKIHTHFVQTLTQTGRLS 628

Query: 839  ARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFKA 897
            +  PNLQN P   ++  KIRQAF+ + PG  L  ADY Q+ELR+LAH++  K+M  AF  
Sbjct: 629  STDPNLQNIPIRIEEGRKIRQAFVPSEPGWQLFSADYSQIELRVLAHISGDKAMQQAFID 688

Query: 898  GGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAY 957
            G D HS TA  ++                H +D   V        ++RR+AK +NF I Y
Sbjct: 689  GEDIHSATARAIF----------------HLDDDQKVT------PNDRRQAKAVNFGIVY 726

Query: 958  GKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFP 1017
            G +  GL+++  +S  EAK+ +D +      +  + E   ++++ D +V TL  R R  P
Sbjct: 727  GISDYGLSQNLNISRAEAKRFIDRYLETYSGIHQFMEKIVEQAKKDGYVSTLFHRRRYLP 786

Query: 1018 AIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             I S   + R+  ER A+N+P+QG+AAD+   AM+ +++      L  ++LLQV
Sbjct: 787  DIHSSNFNVRSFAERTALNSPIQGTAADIIKIAMIRLAEKLEAMNLSSRILLQV 840


>gi|365875036|ref|ZP_09414566.1| DNA polymerase I [Elizabethkingia anophelis Ag1]
 gi|442589320|ref|ZP_21008128.1| DNA polymerase I [Elizabethkingia anophelis R26]
 gi|365757148|gb|EHM99057.1| DNA polymerase I [Elizabethkingia anophelis Ag1]
 gi|442560930|gb|ELR78157.1| DNA polymerase I [Elizabethkingia anophelis R26]
          Length = 938

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 145/285 (50%), Gaps = 29/285 (10%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLNINTE-TGRLSARRPNLQN 846
            + I  + E   +  L S ++  LP Q   +   + RVH + +  T  TGRL++  PNLQN
Sbjct: 632  EIIKHILEYRQLQKLKSTYVDALPTQ---IDAFDNRVHTNFSQTTAATGRLASVNPNLQN 688

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
             P       +IR AF+A  G  LI ADY Q+ELR++A ++   +ML+AF  G D H+ TA
Sbjct: 689  IPIRTLRGQQIRGAFVAGEGKKLISADYSQIELRLIAEISGENNMLEAFNQGADIHASTA 748

Query: 907  MNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLAR 966
              ++                    K P+   ++    +R +AK +NF I YG+    LA 
Sbjct: 749  AKLF--------------------KIPI---EEVSKIQRSQAKTVNFGIIYGQGAFALAE 785

Query: 967  DWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQ 1026
               +S  EAK  +D +Y     +  + + + K++R   +V T+LGR R    I S     
Sbjct: 786  QTGLSRSEAKAMIDAYYETYPRLREYMDEQVKKARDLGYVETILGRKRHLTDINSNNFVV 845

Query: 1027 RNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R H ER A+N P+QGSAAD+   AM+ I +    K++  K+LLQV
Sbjct: 846  RGHAERNAVNAPIQGSAADIIKLAMIRIDQQLDEKKMNTKMLLQV 890


>gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer ATCC 11845 = DSM 15868]
 gi|383485028|ref|YP_005393940.1| DNA polymerase i [Riemerella anatipestifer ATCC 11845 = DSM 15868]
 gi|386322304|ref|YP_006018466.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Riemerella anatipestifer RA-GD]
 gi|416111293|ref|ZP_11592550.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
 gi|442315114|ref|YP_007356417.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Riemerella anatipestifer RA-CH-2]
 gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer ATCC 11845 = DSM 15868]
 gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
 gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Riemerella anatipestifer RA-GD]
 gi|380459713|gb|AFD55397.1| DNA polymerase i [Riemerella anatipestifer ATCC 11845 = DSM 15868]
 gi|441484037|gb|AGC40723.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Riemerella anatipestifer RA-CH-2]
          Length = 935

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 149/285 (52%), Gaps = 29/285 (10%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSL-NINTETGRLSARRPNLQN 846
            + I  + E   +  L S ++  LP Q   +S  +GRVH S       TGRL++  PNLQN
Sbjct: 629  EIIKLILEYRQLQKLKSTYVDALPNQ---ISPIDGRVHTSFAQTVAATGRLASNNPNLQN 685

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
             P   +   ++R AF+A  G+ ++ ADY Q+ELR++A ++  ++M+ AFK G D H+ TA
Sbjct: 686  IPIRTERGQQVRGAFVAPKGSKIVSADYSQIELRLIAEISGEETMIKAFKEGQDIHASTA 745

Query: 907  MNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLAR 966
              ++                   D P    L +   ++R +AK +NF I YG++   LA 
Sbjct: 746  SKLF-------------------DVP----LNEVSKTQRSQAKTVNFGIIYGQSAFALAD 782

Query: 967  DWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQ 1026
               +S  +AK+ +D +Y    ++  +   + + +R   +V T++GR R    I S     
Sbjct: 783  QTGLSRTDAKQLIDSYYETYPKLKAFMTEQVQVARKKGYVETIMGRKRHLKDINSNNFVV 842

Query: 1027 RNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R H ER A+N P+QGSAAD+   AM++I    + + L  K+LLQV
Sbjct: 843  RGHAERNAVNAPIQGSAADIIKLAMIKIDSEIKAQGLKTKMLLQV 887



 Score = 47.8 bits (112), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
           ++  F PFFE  SI K+ HN  +D  VL NYG++V+G   DTM    L +   R
Sbjct: 408 IVERFRPFFEKESILKIAHNLKYDYKVLLNYGIEVTGNLFDTMIAHYLLNPDGR 461


>gi|421233102|ref|ZP_15689727.1| DNA polymerase I [Streptococcus pneumoniae 2061617]
 gi|421235107|ref|ZP_15691720.1| DNA polymerase I [Streptococcus pneumoniae 2061617]
 gi|421248408|ref|ZP_15704872.1| DNA polymerase I [Streptococcus pneumoniae 2082239]
 gi|395599072|gb|EJG59255.1| DNA polymerase I [Streptococcus pneumoniae 2061617]
 gi|395603814|gb|EJG63947.1| DNA polymerase I [Streptococcus pneumoniae 2061617]
 gi|395615955|gb|EJG75969.1| DNA polymerase I [Streptococcus pneumoniae 2082239]
          Length = 877

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|381172148|ref|ZP_09881282.1| DNA polymerase I [Xanthomonas citri pv. mangiferaeindicae LMG 941]
 gi|380687415|emb|CCG37769.1| DNA polymerase I [Xanthomonas citri pv. mangiferaeindicae LMG 941]
          Length = 934

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/261 (34%), Positives = 136/261 (52%), Gaps = 40/261 (15%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            ++GRVH S +     TGRLS+  PNLQN P   +D  +IR+AF+A PG  LI  DY Q+E
Sbjct: 657  QSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIE 716

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LRI+AHL+    ++ AF++G D H  TA  ++    + V                     
Sbjct: 717  LRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVS-------------------- 756

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A ERR AK +NF + YG +  GLAR   +   EA+  + L+++    V  + E  ++
Sbjct: 757  ---ADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRYPGVRDFMETTRQ 813

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +V T+ GR      I + ++ QR   ERAAIN P+QG+AAD+   AM+++    
Sbjct: 814  QARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADIIKRAMVKVD--- 870

Query: 1059 RLKELGW--------KLLLQV 1071
                 GW        K++LQV
Sbjct: 871  -----GWIADHAQRAKMILQV 886


>gi|418117983|ref|ZP_12754945.1| DNA polymerase I family protein [Streptococcus pneumoniae GA18523]
 gi|418151786|ref|ZP_12788526.1| DNA polymerase I family protein [Streptococcus pneumoniae GA16121]
 gi|418156245|ref|ZP_12792964.1| DNA polymerase I family protein [Streptococcus pneumoniae GA16833]
 gi|418226643|ref|ZP_12853264.1| DNA polymerase I family protein [Streptococcus pneumoniae 3063-00]
 gi|353793313|gb|EHD73680.1| DNA polymerase I family protein [Streptococcus pneumoniae GA18523]
 gi|353818431|gb|EHD98629.1| DNA polymerase I family protein [Streptococcus pneumoniae GA16121]
 gi|353825522|gb|EHE05686.1| DNA polymerase I family protein [Streptococcus pneumoniae GA16833]
 gi|353883848|gb|EHE63650.1| DNA polymerase I family protein [Streptococcus pneumoniae 3063-00]
          Length = 870

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 551  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 610

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 611  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 669

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 670  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 707

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 708  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 767

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 768  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 822


>gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|386266417|ref|YP_005829909.1| DNA polymerase I [Haemophilus influenzae R2846]
 gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846]
          Length = 930

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 152/294 (51%), Gaps = 32/294 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++    +E   + +    L E   +  L S +   LP     V+ + GRVH 
Sbjct: 607  KGAPSTNEEVL---EELSYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 660

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G S++ ADY Q+ELRI+AHL
Sbjct: 661  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHL 720

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  + +++AF  G D H  TA  ++         G  L E   E              +R
Sbjct: 721  SGDQGLINAFSQGKDIHRSTAAEIF---------GVSLDEVTSE--------------QR 757

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+R   +S  +A+K +DL++     V  +    + +++   +
Sbjct: 758  RNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGY 817

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM++I +  R
Sbjct: 818  VETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKIDEVIR 871



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 159/376 (42%), Gaps = 83/376 (22%)

Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVV 358
           S  ++ ++  K +  + T Q++ A EN  + K++I R+K  +          ++ A    
Sbjct: 297 SITQTTEQPVKMNQYQATSQDQSAVEN--TPKIQIDRTKYETL---------LTQADLTH 345

Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
           W+       L+ A DTE   +D      V     I F++ +G EA +      + +D LD
Sbjct: 346 WIEKLNTAKLI-AVDTETDSLDYISANLVG----ISFALENG-EATY----LPLQLDYLD 395

Query: 419 GGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
                     L    P  E+P+I K+  N  FD  +   +G+++ G   DTM ++   +S
Sbjct: 396 APKTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYTLNS 455

Query: 475 SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGS 534
           +    G ++++ L   ++ +  +  A++    KG +      +++   I           
Sbjct: 456 T----GRHNMDDLA--KRYLGHETIAFESLAGKGKS------QLTFNQI----------- 492

Query: 535 AGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKS 593
                   P+E+           Y+A D+  T+KL ++L        W KL  +P    +
Sbjct: 493 --------PLEQ--------ATEYAAEDADVTMKLQQAL--------WLKLQEEP----T 524

Query: 594 MFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDA 653
           + + Y+    P   +L +ME  G+L+D + L  I+    A +  A+ + + +A    P  
Sbjct: 525 LVELYKTMELPLLHVLSRMERTGVLIDSDALF-IQSNEIATRLTALEK-QAYALAGQP-- 580

Query: 654 KYMNVGSDTQLRQLLF 669
              N+ S  QL+++LF
Sbjct: 581 --FNLASTKQLQEILF 594


>gi|418522210|ref|ZP_13088248.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
            GSPB2388]
 gi|410701574|gb|EKQ60095.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
            GSPB2388]
          Length = 934

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/261 (34%), Positives = 136/261 (52%), Gaps = 40/261 (15%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            ++GRVH S +     TGRLS+  PNLQN P   +D  +IR+AF+A PG  LI  DY Q+E
Sbjct: 657  QSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIE 716

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LRI+AHL+    ++ AF++G D H  TA  ++    + V                     
Sbjct: 717  LRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVS-------------------- 756

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A ERR AK +NF + YG +  GLAR   +   EA+  + L+++    V  + E  ++
Sbjct: 757  ---ADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRYPGVRDFMETTRQ 813

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +V T+ GR      I + ++ QR   ERAAIN P+QG+AAD+   AM+++    
Sbjct: 814  QARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADIIKRAMVKVD--- 870

Query: 1059 RLKELGW--------KLLLQV 1071
                 GW        K++LQV
Sbjct: 871  -----GWIADHAQRAKMILQV 886


>gi|421230867|ref|ZP_15687518.1| DNA polymerase I [Streptococcus pneumoniae 2080076]
 gi|395598401|gb|EJG58603.1| DNA polymerase I [Streptococcus pneumoniae 2080076]
          Length = 877

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|393775970|ref|ZP_10364267.1| DNA polymerase I [Ralstonia sp. PBA]
 gi|392716913|gb|EIZ04490.1| DNA polymerase I [Ralstonia sp. PBA]
          Length = 930

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/256 (34%), Positives = 139/256 (54%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ + GRVH +    T  TGRL++  PNLQN P   ++  +IR+AFIA PGN ++ ADY 
Sbjct: 650  VNPRTGRVHTTYGQATAVTGRLASTDPNLQNIPVRTEEGRRIREAFIAGPGNVIVSADYS 709

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AH++  +++L AF  G D H  TA  ++      V   +V             
Sbjct: 710  QIELRIMAHISGDENLLRAFAEGKDIHRATAAEIF-----GVGVDEVT------------ 752

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                  A +RR AK +NF + YG +  GLA +  ++ + AK  +D ++     V T+ E 
Sbjct: 753  ------ADQRRVAKTINFGLIYGMSAFGLAANLGITRDAAKMYIDRYFTRYPGVATYMEE 806

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  +R   +V T+ GR    P I+     +R   ERAAIN P+QG+AAD+   +M+ + 
Sbjct: 807  TRSAARERGYVETVFGRRLWLPDIRGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVQ 866

Query: 1056 KNARLKELGWKLLLQV 1071
            +    + LG +L++QV
Sbjct: 867  RWLEDERLGSRLIMQV 882


>gi|418138393|ref|ZP_12775225.1| DNA polymerase I family protein [Streptococcus pneumoniae GA13338]
 gi|353906100|gb|EHE81504.1| DNA polymerase I family protein [Streptococcus pneumoniae GA13338]
          Length = 870

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 551  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 610

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 611  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 669

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 670  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 707

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 708  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 767

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 768  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 822


>gi|307066713|ref|YP_003875679.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Streptococcus pneumoniae AP200]
 gi|306408250|gb|ADM83677.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Streptococcus pneumoniae AP200]
          Length = 889

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 570  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 629

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 630  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 688

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 689  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 726

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 727  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 786

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 787  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 841


>gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021]
          Length = 743

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 152/294 (51%), Gaps = 32/294 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++    +E   + +    L E   +  L S +   LP     V+ + GRVH 
Sbjct: 420  KGAPSTNEEVL---EELSYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 473

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G S++ ADY Q+ELRI+AHL
Sbjct: 474  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 533

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  + +++AF  G D H  TA  ++         G  L E   E              +R
Sbjct: 534  SGDQGLINAFSQGKDIHRSTAAEIF---------GVSLDEVTSE--------------QR 570

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+R   +S  +A+K +DL++     V  +    + +++   +
Sbjct: 571  RNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGY 630

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM++I +  R
Sbjct: 631  VETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKIDEVIR 684



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 160/379 (42%), Gaps = 89/379 (23%)

Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMV---VDNVSAAK 355
           S  ++ ++  K +  + T Q++ A EN  + K++I R+K  +  +   +   ++ +++AK
Sbjct: 110 SITQTTEQPVKMNQYKATSQDQSAVEN--TPKIQIDRTKYETLLTQADLTRWIEKLNSAK 167

Query: 356 KVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD 415
            +             A DTE   +D      V     I F++ +G  A        + +D
Sbjct: 168 LI-------------AVDTETDSLDYMSANLVG----ISFALENGEAAYL-----PLQLD 205

Query: 416 LLDGGGR----DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
            LD          L    P  E+P+I K+  N  FD  +   +G+++ G   DTM ++  
Sbjct: 206 YLDAPKTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYT 265

Query: 472 WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
            +S+    G ++++ L   ++ +  +  A++    KG +      +++   I        
Sbjct: 266 LNST----GRHNMDDLA--KRYLGHETIAFESLAGKGKS------QLTFNQI-------- 305

Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
                      P+E+           Y+A D+  T+KL ++L        W KL  +P  
Sbjct: 306 -----------PLEQ--------ATEYAAEDADVTMKLQQAL--------WLKLQEEP-- 336

Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHC 650
             ++ + Y+    P   +L +ME  G+L+D + L  I+    A +  A+ + + +A    
Sbjct: 337 --TLVELYKTMELPLLHVLSRMERTGVLIDSDALF-IQSNEIATRLTALEK-QAYALAGQ 392

Query: 651 PDAKYMNVGSDTQLRQLLF 669
           P     N+ S  QL+++LF
Sbjct: 393 P----FNLASTKQLQEILF 407


>gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
 gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
          Length = 928

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 130/239 (54%), Gaps = 24/239 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ ++GRVH S +   T TGRLS+  PNLQN P   +   ++RQAFIA PG  ++ ADY 
Sbjct: 647  INPRSGRVHTSYHQAITATGRLSSTEPNLQNIPIRTEQGRRVRQAFIARPGYKIVAADYS 706

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  + +L AF  G D H+ TA  ++      V T Q              
Sbjct: 707  QIELRIMAHLSQDEGLLKAFSQGKDIHTATAAEVFNVSLTEVTTEQ-------------- 752

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR AK +NF + YG +  GL++   VS  +A+  +DL++     VL + E 
Sbjct: 753  ---------RRNAKAINFGLIYGMSAFGLSKQLNVSRHDAQHYMDLYFERYPGVLKYMED 803

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             +  ++ + +V T+ GR    P I +    +R   ERAAIN P+QG+AAD+   AML++
Sbjct: 804  SRIVAKENGYVSTVFGRRLYLPDINASNGLRRKGAERAAINAPMQGTAADIIKKAMLKV 862


>gi|418235483|ref|ZP_12862052.1| DNA polymerase I family protein [Streptococcus pneumoniae GA19690]
 gi|353893412|gb|EHE73157.1| DNA polymerase I family protein [Streptococcus pneumoniae GA19690]
          Length = 877

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|401681272|ref|ZP_10813176.1| DNA-directed DNA polymerase [Streptococcus sp. AS14]
 gi|400187069|gb|EJO21271.1| DNA-directed DNA polymerase [Streptococcus sp. AS14]
          Length = 880

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 154/283 (54%), Gaps = 28/283 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ +  S  +G++H   +   T+TGRLS+  PNLQN P  
Sbjct: 575  VSKILEYRQISKLQSTYIIGLQEAIAS--DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVR 632

Query: 850  LEKDRYKIRQAFIAVPGNS-LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+   G+S L+ +DY Q+ELR+LAH++  + ++ AF+ G D H+ TAM 
Sbjct: 633  LEQGRL-IRKAFVPEWGDSALLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMR 691

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      +E          ED  P         ++RR AK +NF + YG +  GLA + 
Sbjct: 692  VF-----GIE--------KAEDVTP---------NDRRNAKAVNFGVVYGISDFGLANNL 729

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +S + AK  +  ++     +  + E   +E+R   +V T+  R R  P I S   + RN
Sbjct: 730  GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRN 789

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + +    K    ++LLQV
Sbjct: 790  FAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQV 832


>gi|418186058|ref|ZP_12822589.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47360]
 gi|353853880|gb|EHE33860.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47360]
          Length = 877

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
 gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
          Length = 888

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 151/283 (53%), Gaps = 26/283 (9%)

Query: 791  AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPA 849
             +S L E   +  L S ++  L G  ++ + G++H + +   T TGRLS+  PNLQN P 
Sbjct: 580  VVSLLLEYRQLAKLKSTYVDGLTGL-INPQTGKLHTTFHQAVTATGRLSSSEPNLQNVPI 638

Query: 850  LEKDRYKIRQAFIAV-PGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
                  KIR+ F+   P N +  ADY Q+ELRILAH+A   +++DAF    D H+RTA  
Sbjct: 639  RLDAGRKIRKFFVPCKPDNFIFSADYSQIELRILAHIAQDNNLMDAFAKKQDIHTRTASE 698

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++      V   +V  E  G                  +AK +NF I YG +  GLA+D 
Sbjct: 699  VF-----GVAMDEVTPEMRG------------------RAKAVNFGIVYGISDFGLAKDI 735

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
            KV+ +EA + ++ ++N    V  + +   +E+R   +V T+L R R  P + S  R  R+
Sbjct: 736  KVTRKEAGRYINNYFNRYSGVKAYIDRVIREAREKGYVTTILNRRRYLPDLFSSNRVVRS 795

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              ER A+NTP+QGSA+D+   AM+ I +  R ++L   ++LQV
Sbjct: 796  FGERTAMNTPIQGSASDIIKLAMVLIYREMRKRKLSSTMILQV 838


>gi|182683002|ref|YP_001834749.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
 gi|182628336|gb|ACB89284.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
          Length = 889

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 570  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 629

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 630  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 688

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 689  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 726

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 727  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 786

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 787  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 841


>gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
 gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
          Length = 906

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 148/277 (53%), Gaps = 31/277 (11%)

Query: 797  EVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRY 855
            EV  + S++ + I       ++ ++GR+H + N +   TGRLS+  PNLQN P    +  
Sbjct: 610  EVAKLKSIVDSLI------PMAAEDGRIHTTFNQMVAATGRLSSTDPNLQNIPIRTAEGR 663

Query: 856  KIRQAFIAVPG-NSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIR 914
            +IR+ F+   G   L+ ADY Q+ELRI+AHL+  +++++AF +G DFH+ TA  ++    
Sbjct: 664  QIREGFVVGEGYECLLTADYSQIELRIMAHLSGDEALIEAFTSGADFHTITASRVF---- 719

Query: 915  NAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEE 974
                             PP    +      R + K +N+ +AYG +P GLA    ++ +E
Sbjct: 720  ---------------GLPP----EQIDGELRARIKAMNYGLAYGLSPFGLASQLGITPDE 760

Query: 975  AKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAA 1034
            A+  ++ ++ +   V  + +   + +R D +  T+LGR R  P + S  R +R   ER A
Sbjct: 761  ARVLMEEYFQQFGGVRDYLQGVVRRARQDGYTETILGRRRYLPDLTSDNRQRREMAERMA 820

Query: 1035 INTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            +N P+QGSAAD+   A L + +  R + L  ++LLQV
Sbjct: 821  LNAPIQGSAADIIKVASLRVDRALRERGLASRMLLQV 857


>gi|407452638|ref|YP_006724363.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain-containing
            protein [Riemerella anatipestifer RA-CH-1]
 gi|403313622|gb|AFR36463.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain protein
            [Riemerella anatipestifer RA-CH-1]
          Length = 935

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 149/285 (52%), Gaps = 29/285 (10%)

Query: 790  DAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSL-NINTETGRLSARRPNLQN 846
            + I  + E   +  L S ++  LP Q   +S  +GRVH S       TGRL++  PNLQN
Sbjct: 629  EIIKLILEYRQLQKLKSTYVDALPNQ---ISPIDGRVHTSFAQTVAATGRLASNNPNLQN 685

Query: 847  QPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA 906
             P   +   ++R AF+A  G  ++ ADY Q+ELR++A ++  ++M++AFK G D H+ TA
Sbjct: 686  IPIRTERGQQVRGAFVASKGAKIVSADYSQIELRLIAEISGEETMINAFKEGQDIHASTA 745

Query: 907  MNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLAR 966
              ++                   D P    L +   ++R +AK +NF I YG++   LA 
Sbjct: 746  SKLF-------------------DVP----LSEVSKTQRSQAKTVNFGIIYGQSAFALAD 782

Query: 967  DWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQ 1026
               +S  +AK+ +D +Y    ++  +   + + +R   +V T++GR R    I S     
Sbjct: 783  QTGLSRTDAKQLIDSYYETYPKLKAFMAEQVQVARKKGYVETIMGRRRHLKDINSNNFVV 842

Query: 1027 RNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            R H ER A+N P+QGSAAD+   AM++I    + + L  K+LLQV
Sbjct: 843  RGHAERNAVNAPIQGSAADIIKLAMIKIDSEIKAQGLKTKMLLQV 887



 Score = 47.8 bits (112), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRR 477
           ++  F PFFE  SI K+ HN  +D  VL NYG++V+G   DTM    L +   R
Sbjct: 408 IVERFRPFFEKESILKIAHNLKYDYKVLLNYGIEVTGNLFDTMIAHYLLNPDGR 461


>gi|419478956|ref|ZP_14018769.1| DNA polymerase I family protein [Streptococcus pneumoniae GA19101]
 gi|419498649|ref|ZP_14038349.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47597]
 gi|379574290|gb|EHZ39233.1| DNA polymerase I family protein [Streptococcus pneumoniae GA19101]
 gi|379603537|gb|EHZ68305.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47597]
 gi|429317068|emb|CCP36808.1| DNA polymerase I [Streptococcus pneumoniae SPN034156]
          Length = 877

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|418104116|ref|ZP_12741177.1| DNA polymerase I family protein [Streptococcus pneumoniae GA44500]
 gi|418172438|ref|ZP_12809052.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41277]
 gi|353780085|gb|EHD60547.1| DNA polymerase I family protein [Streptococcus pneumoniae GA44500]
 gi|353839137|gb|EHE19211.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41277]
          Length = 870

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 159/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 551  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYMQDLTQTGRLS 610

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 611  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 669

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      +  A++RR AK +NF + 
Sbjct: 670  EGADIHTSTAMRVF-----------------GIERP-----DNVTANDRRNAKAVNFGVV 707

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++    ++  + +   +E+R   +V TL  R R  
Sbjct: 708  YGISDFGLSNNLGISRKEAKAYIDTYFERFPDIKNYMDEVVREARDKGYVETLFKRRREL 767

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 768  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 822


>gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 877

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/257 (35%), Positives = 148/257 (57%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY
Sbjct: 597  VRPDTGKVHTMFNQTLTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADY 656

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 657  SQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIF-HVSE------------------- 696

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 697  ---EEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVRRYME 753

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 754  NIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 813

Query: 1055 SKNARLKELGWKLLLQV 1071
            +   + ++L  +LLLQV
Sbjct: 814  AARLKEEQLQARLLLQV 830


>gi|346313979|ref|ZP_08855503.1| hypothetical protein HMPREF9022_01160 [Erysipelotrichaceae bacterium
            2_2_44A]
 gi|345907120|gb|EGX76836.1| hypothetical protein HMPREF9022_01160 [Erysipelotrichaceae bacterium
            2_2_44A]
          Length = 861

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 139/253 (54%), Gaps = 24/253 (9%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            K+G++H   N I T+TGRLS+  PNLQN    +++  +IR+AF+A  G+ L+ ADY Q+E
Sbjct: 584  KDGKIHTIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEIRKAFVASAGHVLLSADYSQIE 643

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+A+ + M+DAF  G D H++TAM ++    +AV+                    
Sbjct: 644  LRMLAHMADEEVMIDAFNHGIDIHTKTAMQIFDVEHDAVD-------------------- 683

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A+ RR AK +NF I YG++  GL+    ++ +EA   +D ++     + ++ +    
Sbjct: 684  ---ANMRRSAKTVNFGIVYGQSDFGLSEQLGITRKEAHAFIDKYFASYPNIKSFMDTTIA 740

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
                  +V TL  R R    I       R   +RAA+N P+QGSAAD+   AM+ I K  
Sbjct: 741  FCEEHGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQGSAADLIKLAMIHIYKKM 800

Query: 1059 RLKELGWKLLLQV 1071
            + +++  +++LQ+
Sbjct: 801  QEEQVKSRMILQI 813


>gi|418517767|ref|ZP_13083925.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
            GSPB1386]
 gi|410705480|gb|EKQ63952.1| DNA polymerase I [Xanthomonas axonopodis pv. malvacearum str.
            GSPB1386]
          Length = 934

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/261 (34%), Positives = 136/261 (52%), Gaps = 40/261 (15%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            ++GRVH S +     TGRLS+  PNLQN P   +D  +IR+AF+A PG  LI  DY Q+E
Sbjct: 657  QSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIE 716

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LRI+AHL+    ++ AF++G D H  TA  ++    + V                     
Sbjct: 717  LRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVS-------------------- 756

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A ERR AK +NF + YG +  GLAR   +   EA+  + L+++    V  + E  ++
Sbjct: 757  ---ADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRYPGVRDFMETTRQ 813

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +V T+ GR      I + ++ QR   ERAAIN P+QG+AAD+   AM+++    
Sbjct: 814  QARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADIIKRAMVKVD--- 870

Query: 1059 RLKELGW--------KLLLQV 1071
                 GW        K++LQV
Sbjct: 871  -----GWIADHAQRAKMILQV 886


>gi|336394013|ref|ZP_08575412.1| DNA-directed DNA polymerase I [Lactobacillus coryniformis subsp.
            torquens KCTC 3535]
          Length = 888

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 154/292 (52%), Gaps = 32/292 (10%)

Query: 789  CDAISALCEVCSIDSLISNFILPLQGSNVSG-------KNGRVHCS-LNINTETGRLSAR 840
             + + A+  + S D L    +  LQ + + G        +G++H + L   T TGRLS+ 
Sbjct: 570  LEQLKAIAPIAS-DVLDYRGLTKLQSTYIDGLLKVIHPDDGKIHTTYLQTLTATGRLSSI 628

Query: 841  RPNLQNQPALEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGG 899
             PNLQN P  ++D  +IRQAF+    G  +  ADY Q+ELR+LAH+++ +++  AF  G 
Sbjct: 629  DPNLQNIPVRDEDGRQIRQAFVPRKAGWQIFAADYSQIELRVLAHISHDQNLQAAFSEGA 688

Query: 900  DFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGK 959
            D H+ TAM ++             LE   E  P +          RR+AK +NF I YG 
Sbjct: 689  DIHASTAMRIFG------------LESAAEVTPNM----------RRQAKAVNFGIVYGI 726

Query: 960  TPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAI 1019
            +  GL+++  ++ ++AK  +D +++E   V  + E     ++   +V TL  R R  P I
Sbjct: 727  SDYGLSQNLGITRKQAKTYIDSYFHEYPNVKQYMEDIVAAAKKYGYVETLFHRRRYLPDI 786

Query: 1020 KSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
             S   + R+  ER A+NTP+QGSAAD+   AML + K    ++L   +LLQV
Sbjct: 787  HSKNFNLRSFAERTAMNTPIQGSAADIIKVAMLNMQKALTEQQLQATMLLQV 838


>gi|418088452|ref|ZP_12725613.1| DNA polymerase I family protein [Streptococcus pneumoniae GA43265]
 gi|418215523|ref|ZP_12842249.1| DNA polymerase I family protein [Streptococcus pneumoniae
            Netherlands15B-37]
 gi|419432683|ref|ZP_13972805.1| DNA polymerase I family protein [Streptococcus pneumoniae GA40183]
 gi|419463434|ref|ZP_14003330.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04175]
 gi|353764193|gb|EHD44742.1| DNA polymerase I family protein [Streptococcus pneumoniae GA43265]
 gi|353874429|gb|EHE54284.1| DNA polymerase I family protein [Streptococcus pneumoniae
            Netherlands15B-37]
 gi|379540713|gb|EHZ05884.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04175]
 gi|379578805|gb|EHZ43713.1| DNA polymerase I family protein [Streptococcus pneumoniae GA40183]
          Length = 877

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 159/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYMQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      +  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DNVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++    ++  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPDIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA]
 gi|418072925|ref|ZP_12710188.1| DNA polymerase I family protein [Streptococcus pneumoniae GA11184]
 gi|418077591|ref|ZP_12714815.1| DNA polymerase I family protein [Streptococcus pneumoniae 4027-06]
 gi|418079746|ref|ZP_12716962.1| DNA polymerase I family protein [Streptococcus pneumoniae 6735-05]
 gi|418097461|ref|ZP_12734563.1| DNA polymerase I family protein [Streptococcus pneumoniae 6901-05]
 gi|418113640|ref|ZP_12750633.1| DNA polymerase I family protein [Streptococcus pneumoniae 5787-06]
 gi|418115818|ref|ZP_12752796.1| DNA polymerase I family protein [Streptococcus pneumoniae 6963-05]
 gi|418133770|ref|ZP_12770630.1| DNA polymerase I family protein [Streptococcus pneumoniae GA11426]
 gi|419430492|ref|ZP_13970639.1| DNA polymerase I family protein [Streptococcus pneumoniae EU-NP05]
 gi|419439292|ref|ZP_13979350.1| DNA polymerase I family protein [Streptococcus pneumoniae GA40410]
 gi|419467969|ref|ZP_14007842.1| DNA polymerase I family protein [Streptococcus pneumoniae GA06083]
 gi|419496482|ref|ZP_14036194.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47522]
 gi|421280080|ref|ZP_15730879.1| DNA polymerase [Streptococcus pneumoniae GA04672]
 gi|421308517|ref|ZP_15759148.1| DNA polymerase [Streptococcus pneumoniae GA62681]
 gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA]
 gi|353748613|gb|EHD29264.1| DNA polymerase I family protein [Streptococcus pneumoniae 4027-06]
 gi|353752463|gb|EHD33088.1| DNA polymerase I family protein [Streptococcus pneumoniae GA11184]
 gi|353754065|gb|EHD34678.1| DNA polymerase I family protein [Streptococcus pneumoniae 6735-05]
 gi|353771617|gb|EHD52124.1| DNA polymerase I family protein [Streptococcus pneumoniae 6901-05]
 gi|353788304|gb|EHD68701.1| DNA polymerase I family protein [Streptococcus pneumoniae 5787-06]
 gi|353792809|gb|EHD73180.1| DNA polymerase I family protein [Streptococcus pneumoniae 6963-05]
 gi|353903757|gb|EHE79271.1| DNA polymerase I family protein [Streptococcus pneumoniae GA11426]
 gi|379548239|gb|EHZ13371.1| DNA polymerase I family protein [Streptococcus pneumoniae GA06083]
 gi|379582391|gb|EHZ47272.1| DNA polymerase I family protein [Streptococcus pneumoniae GA40410]
 gi|379602607|gb|EHZ67377.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47522]
 gi|379632664|gb|EHZ97237.1| DNA polymerase I family protein [Streptococcus pneumoniae EU-NP05]
 gi|395883437|gb|EJG94479.1| DNA polymerase [Streptococcus pneumoniae GA04672]
 gi|395912662|gb|EJH23519.1| DNA polymerase [Streptococcus pneumoniae GA62681]
          Length = 877

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 159/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYMQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      +  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DNVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++    ++  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPDIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|419533496|ref|ZP_14073005.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17457]
 gi|379568957|gb|EHZ33934.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17457]
          Length = 870

 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 159/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 551  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYMQDLTQTGRLS 610

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 611  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 669

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      +  A++RR AK +NF + 
Sbjct: 670  EGADIHTSTAMRVF-----------------GIERP-----DNVTANDRRNAKAVNFGVV 707

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++    ++  + +   +E+R   +V TL  R R  
Sbjct: 708  YGISDFGLSNNLGISRKEAKAYIDTYFERFPDIKNYMDEVVREARDKGYVETLFKRRREL 767

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 768  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 822


>gi|390990081|ref|ZP_10260372.1| DNA polymerase I [Xanthomonas axonopodis pv. punicae str. LMG 859]
 gi|372555183|emb|CCF67347.1| DNA polymerase I [Xanthomonas axonopodis pv. punicae str. LMG 859]
          Length = 934

 Score =  153 bits (386), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 91/261 (34%), Positives = 136/261 (52%), Gaps = 40/261 (15%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            ++GRVH S +     TGRLS+  PNLQN P   +D  +IR+AF+A PG  LI  DY Q+E
Sbjct: 657  QSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIE 716

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LRI+AHL+    ++ AF++G D H  TA  ++    + V                     
Sbjct: 717  LRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVS-------------------- 756

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A ERR AK +NF + YG +  GLAR   +   EA+  + L+++    V  + E  ++
Sbjct: 757  ---ADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRYPGVRDFMETTRQ 813

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +V T+ GR      I + ++ QR   ERAAIN P+QG+AAD+   AM+++    
Sbjct: 814  QARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADIIKRAMVKVD--- 870

Query: 1059 RLKELGW--------KLLLQV 1071
                 GW        K++LQV
Sbjct: 871  -----GWIADHAQRAKMILQV 886


>gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
 gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
          Length = 932

 Score =  153 bits (386), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/246 (38%), Positives = 131/246 (53%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL  + VSG   RVH S +   T TGRLS+R PNLQN P   ++  +IRQAFIA  G  
Sbjct: 647  LPLMINPVSG---RVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYR 703

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF AG D H  TA  ++     +V   Q       
Sbjct: 704  IMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGMPLESVTNEQ------- 756

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                            RR AK +NF + YG +  GLAR   +   EA++ +DL++     
Sbjct: 757  ----------------RRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPG 800

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
             L + E  +K++    +V TL GR    P I S   ++R   ER AIN P+QG+AAD+  
Sbjct: 801  GLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIK 860

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 861  RAMIAV 866


>gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 965

 Score =  153 bits (386), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 138/256 (53%), Gaps = 25/256 (9%)

Query: 818  SGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQ 876
            +G++ RVH S  +  T TGRLS+  PNLQN P   ++  +IRQAFIA  G  LI ADY Q
Sbjct: 685  AGRDDRVHTSFQMAITSTGRLSSTDPNLQNIPVRTEEGTRIRQAFIAPSGKKLISADYSQ 744

Query: 877  LELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPL 936
            +ELR+LA +AN  ++ +AF+ G D H+RTA  ++           + LE  G D      
Sbjct: 745  IELRLLADVANIPALREAFQLGQDIHARTASEVF----------NIPLE--GMD------ 786

Query: 937  LKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEAR 996
                 A  RR+AK +NF I YG +  GL +   +   EA+  +D ++     +  + E  
Sbjct: 787  -----ALTRRRAKAINFGIIYGISAFGLGKQLGIPAGEARTYIDAYFARYPGIRDYMERM 841

Query: 997  KKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            ++E+R   +V T  GR    P I   + ++R + ER AIN P+QG AAD+   AM+ +  
Sbjct: 842  REEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAPLQGGAADIIKRAMVHLPL 901

Query: 1057 NARLKELG-WKLLLQV 1071
              +    G  ++LLQV
Sbjct: 902  ALQKAGFGATRMLLQV 917


>gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [gamma proteobacterium HTCC2207]
 gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
          Length = 926

 Score =  153 bits (386), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 135/256 (52%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++   GR+H S + + T TGRLS+  PNLQN P    +  ++RQAF+A PG  L+ ADY 
Sbjct: 646  INSVTGRIHTSYHQSGTATGRLSSSDPNLQNIPIRSAEGRRVRQAFVAAPGCKLVAADYS 705

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+   S+L AF AG D H  TA  ++      VE  +V ++          
Sbjct: 706  QIELRIMAHLSEDPSLLAAFSAGQDIHRATAAEVF-----GVENEEVTID---------- 750

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                    +RR AK +NF + YG +  GLAR   ++ ++A + ++L++     V  +   
Sbjct: 751  --------QRRSAKAINFGLIYGMSAFGLARQLGINRKQAAEYIELYFTRYPGVQNYMNN 802

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  +     V T+ GR    P I +    +R   ER AIN P+QG+AAD+   AM+ + 
Sbjct: 803  IRHSAAEQGFVETVFGRRLYLPEINASNGMRRQAAERTAINAPMQGTAADIIKLAMINVH 862

Query: 1056 KNARLKELGWKLLLQV 1071
                  +L  K+++QV
Sbjct: 863  NWLETSDLTSKIIMQV 878



 Score = 46.6 bits (109), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 123/321 (38%), Gaps = 81/321 (25%)

Query: 359 WMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD 418
           W+   K   LV A DTE   +D  +       +++  S+ + P      G++C      D
Sbjct: 340 WIEKIKSADLV-AVDTETTSLDYMR------AKLVGISLSTAP------GEACYIPFAHD 386

Query: 419 --GGGRDLLNEFA-----PFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
             G    L  EFA     P+ EDP+  KV  N  +D  VL  +G+ + G   DTM  + +
Sbjct: 387 YMGAPEQLQPEFALEKLKPYLEDPAFPKVGQNLKYDMSVLAQHGISLRGITFDTMLESYV 446

Query: 472 WDS--SRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKL 529
            DS  SR      +L  L G+  +   D                  GK + +  F +  L
Sbjct: 447 LDSVASRHDMDSLALNYL-GEETIKFAD----------------VAGKGAAQLTFNQVAL 489

Query: 530 KKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKP 588
            + G                        Y+A D+  TL+L+++L        W ++  +P
Sbjct: 490 DQAG-----------------------PYAAEDADITLRLHQTL--------WPRVAAEP 518

Query: 589 VPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASK 648
               ++   ++E   P   +L ++E  G LVD   L +  +    E  A +      A +
Sbjct: 519 ----TLTKVFEEIELPLVPVLSRIERTGALVDDTLLFQQSQ----ELSARLGELETEAWE 570

Query: 649 HCPDAKYMNVGSDTQLRQLLF 669
                +  N+ S  QL ++LF
Sbjct: 571 LA--GQQFNLASPKQLGEILF 589


>gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
          Length = 934

 Score =  153 bits (386), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 91/261 (34%), Positives = 136/261 (52%), Gaps = 40/261 (15%)

Query: 820  KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            ++GRVH S +     TGRLS+  PNLQN P   +D  +IR+AF+A PG  LI  DY Q+E
Sbjct: 657  QSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIE 716

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LRI+AHL+    ++ AF++G D H  TA  ++    + V                     
Sbjct: 717  LRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVS-------------------- 756

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A ERR AK +NF + YG +  GLAR   +   EA+  + L+++    V  + E  ++
Sbjct: 757  ---ADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRYPGVRDFMETTRQ 813

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++R   +V T+ GR      I + ++ QR   ERAAIN P+QG+AAD+   AM+++    
Sbjct: 814  QARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADIIKRAMVKVD--- 870

Query: 1059 RLKELGW--------KLLLQV 1071
                 GW        K++LQV
Sbjct: 871  -----GWIADHAQRAKMILQV 886


>gi|429732469|ref|ZP_19267079.1| DNA-directed DNA polymerase [Aggregatibacter actinomycetemcomitans
            Y4]
 gi|429155977|gb|EKX98619.1| DNA-directed DNA polymerase [Aggregatibacter actinomycetemcomitans
            Y4]
          Length = 933

 Score =  153 bits (386), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 153/294 (52%), Gaps = 32/294 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++    +E   + +    L E   +  L S +   LP     V+ + GRVH 
Sbjct: 610  KGAPSTNEEVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 663

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   +   +IRQAFIA  G  +I ADY Q+ELRI+AHL
Sbjct: 664  SYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 723

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +N + +++AF  G D H  TA  ++                       +P L+   + +R
Sbjct: 724  SNDQGLINAFAQGKDIHRSTAAEIF----------------------GLP-LEQVTSEQR 760

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+R   +S  +A++ +DL++     V T+    +++++   +
Sbjct: 761  RNAKAINFGLIYGMSSFGLSRQLGISRADAQRYMDLYFQRYPNVQTFIHDIREKAKAQGY 820

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM+++    R
Sbjct: 821  VETLFGRRLYLPEINSSNAMRRKGTERVAINAPMQGTAADIIKRAMIKLDGITR 874


>gi|427414406|ref|ZP_18904596.1| DNA polymerase I [Veillonella ratti ACS-216-V-Col6b]
 gi|425714782|gb|EKU77785.1| DNA polymerase I [Veillonella ratti ACS-216-V-Col6b]
          Length = 880

 Score =  153 bits (386), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 153/284 (53%), Gaps = 30/284 (10%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            I  + +  ++  LIS ++  L+   + GK  R+H + N + T TGRLS+  PNLQN P  
Sbjct: 575  IELILKYRTVVKLISTYLEGLK-PLIDGKTDRIHSTFNQMVTATGRLSSSDPNLQNIPVR 633

Query: 851  EKDRYKIRQAFIAVPG-NSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNM 909
             +   +IR  F+   G ++L+ ADY Q+ELRILAHL+   +++ AF  G D H  TA   
Sbjct: 634  TEKGREIRALFLPGEGYDTLVSADYSQIELRILAHLSEDPALIKAFMDGEDIHRFTAA-- 691

Query: 910  YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK 969
                           E  G+       ++D   +ER  AK +NF I YG +  GL+RD  
Sbjct: 692  ---------------EVLGKS------IEDVTPTERSHAKAVNFGIIYGISDFGLSRDLG 730

Query: 970  VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNH 1029
            ++  EAK  ++L+++   +V  + +    E+     V T+ GR R  P I S   ++R+ 
Sbjct: 731  ITRGEAKDYIELYFHRYPKVKEYMDNMVAEAHETGMVRTMFGRVRSLPDINSRNFNRRSF 790

Query: 1030 IERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK--LLLQV 1071
             ER A+NTP+QGSAAD+   AM ++ +  RL+  G+K  LLLQV
Sbjct: 791  AERTAMNTPIQGSAADIIKLAMNQVEQ--RLEADGFKSRLLLQV 832


>gi|307704639|ref|ZP_07641540.1| DNA polymerase I [Streptococcus mitis SK597]
 gi|307621792|gb|EFO00828.1| DNA polymerase I [Streptococcus mitis SK597]
          Length = 877

 Score =  153 bits (386), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 162/297 (54%), Gaps = 38/297 (12%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN P  LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPVRLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P     +D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----EDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGW--KLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K   L E G+  K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKA--LVEGGYQTKMLLQV 829


>gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
 gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
          Length = 885

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/258 (37%), Positives = 144/258 (55%), Gaps = 27/258 (10%)

Query: 817  VSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPA-LEKDRYKIRQAFIA-VPGNSLIVAD 873
            V+ + G +H S N   T TGRLS+  PNLQN P  LE  R ++R+AF+   PG  L+ AD
Sbjct: 600  VNPRTGSLHTSFNQTVTATGRLSSSEPNLQNIPVRLELGR-RLRKAFVPHGPGRLLLAAD 658

Query: 874  YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
            Y Q+ELRILAH++  ++M+ AF+ G D H+RTA  ++      V  G+V           
Sbjct: 659  YSQIELRILAHISGDEAMIAAFRRGEDIHARTAAEVF-----GVPLGEV----------- 702

Query: 934  VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
                     + RR AK +NF I YG +  GL+RD  +S  EA   ++ ++   + V  + 
Sbjct: 703  -------TPAMRRSAKAVNFGIVYGISDYGLSRDLGISRSEAHDYIERYFRRYRGVKAYL 755

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E     +R + +V TLLGR R  P + S  R+ R+  ER A+NTP+QG+AAD+   AM++
Sbjct: 756  EEIVARARQEGYVTTLLGRRRYLPDLFSSNRNVRSFGERTAMNTPIQGTAADIIKMAMVK 815

Query: 1054 ISKNARLKELGWKLLLQV 1071
            I +    +    +++LQV
Sbjct: 816  IFRLLEAQYPAARMILQV 833


>gi|350551678|ref|ZP_08920891.1| DNA polymerase I [Thiorhodospira sibirica ATCC 700588]
 gi|349796816|gb|EGZ50599.1| DNA polymerase I [Thiorhodospira sibirica ATCC 700588]
          Length = 928

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 125/239 (52%), Gaps = 24/239 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +  + GR+H S     T TGRLS   PNLQN P        IRQAF A PG  L+ ADY 
Sbjct: 648  IHPRTGRIHASYQQAVTSTGRLSCSDPNLQNIPIRTPPGRLIRQAFTAPPGRLLLAADYS 707

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+    +L AF AG D H  TA  ++                   ++P   
Sbjct: 708  QIELRIMAHLSQDSGLLAAFAAGEDIHRATAAEIF-------------------NRP--- 745

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
             L+   A ERR AK +NF + YG +  GLAR+ K+    AK  +  ++     V  + +A
Sbjct: 746  -LEQVSAEERRAAKAINFGLIYGMSAFGLARELKLEQSAAKDYMARYFARYPGVQAYMQA 804

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             ++++    +V TLLGR    P I+S    +R   ER AIN P+QGSAAD+   AML++
Sbjct: 805  SREQALSQGYVETLLGRRLYLPDIRSRNAQRRAQAERLAINAPMQGSAADIIKAAMLKV 863


>gi|416031112|ref|ZP_11572398.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype a
            str. H5P1]
 gi|348002278|gb|EGY42982.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype a
            str. H5P1]
          Length = 962

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 153/294 (52%), Gaps = 32/294 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++    +E   + +    L E   +  L S +   LP     V+ + GRVH 
Sbjct: 639  KGAPSTNEEVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 692

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   +   +IRQAFIA  G  +I ADY Q+ELRI+AHL
Sbjct: 693  SYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 752

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +N + +++AF  G D H  TA  ++                       +P L+   + +R
Sbjct: 753  SNDQGLINAFAQGKDIHRSTAAEIF----------------------GLP-LEQVTSEQR 789

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+R   +S  +A++ +DL++     V T+    +++++   +
Sbjct: 790  RNAKAINFGLIYGMSSFGLSRQLGISRADAQRYMDLYFQRYPNVQTFIHDIREKAKAQGY 849

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM+++    R
Sbjct: 850  VETLFGRRLYLPEINSSNAMRRKGTERVAINAPMQGTAADIIKRAMIKLDGITR 903


>gi|397904016|ref|ZP_10504947.1| DNA polymerase I [Caloramator australicus RC3]
 gi|343178762|emb|CCC57846.1| DNA polymerase I [Caloramator australicus RC3]
          Length = 850

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/258 (36%), Positives = 151/258 (58%), Gaps = 33/258 (12%)

Query: 820  KNGRVHCSLNIN-TETGRLSARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIV-ADYGQ 876
            ++G++H + N   T TGR+S+  PNLQN P  LE+ R +IR+AF+    + +I+ ADY Q
Sbjct: 572  EDGKIHSNFNQTVTATGRISSTEPNLQNIPIKLEQGR-QIRRAFVPTDDDYVILSADYSQ 630

Query: 877  LELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPL 936
            +ELR+LAHL+  ++++DAF  G D H+RTA  ++      V+  +V            PL
Sbjct: 631  IELRVLAHLSKDENLIDAFTKGQDIHTRTASEVF-----GVKMEEV-----------TPL 674

Query: 937  LKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV---LTWQ 993
                   +R +AK +NF I YG +  GLA+D K+S +EAK+ ++ ++   + V   L W 
Sbjct: 675  -------QRSRAKAVNFGIVYGLSDFGLAKDLKISRKEAKEYIENYFERYKGVRNYLDWI 727

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
                KE     +V T++ R R  P I+S  ++ +   ER A+NTPVQGSAAD+   AM++
Sbjct: 728  VDFAKEK---GYVTTIMNRIRYIPEIRSTNKTVKMLGERLAMNTPVQGSAADIIKIAMIK 784

Query: 1054 ISKNARLKELGWKLLLQV 1071
            + K  + + L  +++LQV
Sbjct: 785  VFKRLKTEGLKSRIILQV 802


>gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
 gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
          Length = 929

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/246 (37%), Positives = 133/246 (54%), Gaps = 27/246 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LPL    ++  +GRVH S +   T TGRLS+  PNLQN P    +  +IRQAFIA  G+ 
Sbjct: 644  LPLM---INPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHR 700

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            ++ ADY Q+ELRI+AHL+  K +L AF +  D H  TA  ++         G  L +  G
Sbjct: 701  ILAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVF---------GVALDKVSG 751

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
            E              +RR AK +NF + YG +  GL+R   +   EAKK +DL++     
Sbjct: 752  E--------------QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPG 797

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            VL + E+ ++ +    +V TL GR    P I +    +R   ERAAIN P+QG+AAD+  
Sbjct: 798  VLQYMESTRELAAQKGYVSTLDGRRLYLPDINASNAMRRKAAERAAINAPMQGTAADIIK 857

Query: 1049 CAMLEI 1054
             AM+ +
Sbjct: 858  RAMIAV 863



 Score = 42.7 bits (99), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 99/257 (38%), Gaps = 58/257 (22%)

Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
           D+L    P  EDP  +KV  N  FD  VL+ Y +++ G   DTM  +            Y
Sbjct: 400 DVLARLKPLLEDPQSQKVGQNLKFDRGVLKRYDIELLGIRFDTMLES------------Y 447

Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
           +L ++ G   +   D  A +    K  T E   GK   +  F +  L++           
Sbjct: 448 ALNSVAGRHDM---DTLASRWLQHKTVTFEEIAGKGKNQLTFNQIALEQAA--------- 495

Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
                          Y+A D+  TL+L+       L+M  +L+ +  P     + +++  
Sbjct: 496 --------------HYAAEDADVTLQLH-------LKMWPELEKEQGPK----NVFEQVE 530

Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
            P   ++ ++E  G+L+D+  L      A   QE            H    +  N+ S  
Sbjct: 531 MPLVPVISRIERNGVLIDQSIL------AVHSQELGSRLAELELKAHELAGEPFNLSSPK 584

Query: 663 QLRQLLF---GGKPNSK 676
           QL+ +LF   G KP  K
Sbjct: 585 QLQTILFEKQGIKPTKK 601


>gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105]
 gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105]
          Length = 927

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 139/256 (54%), Gaps = 24/256 (9%)

Query: 817  VSGKNGRVHCSL-NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            V+ + GRVH +       TGRL++  PNLQN P    +  ++R+AFIA PG  L+ ADY 
Sbjct: 647  VNARTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRVREAFIAAPGCVLVSADYS 706

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AH++  ++++ AF  G D HS TA  ++    N V +                
Sbjct: 707  QIELRIMAHISGDEALIHAFNEGLDIHSATASEIFGVGLNEVTS---------------- 750

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR AK++NF + YG +  GLA +  ++ E AK  +D ++     V  + + 
Sbjct: 751  -------DHRRTAKVINFGLIYGMSAFGLAGNLGITREAAKLYIDRYFARYPGVAKFMDN 803

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             + +++ D  V T+ GR    P IKS    +R   ERAAIN P+QG++AD+   AM+E+S
Sbjct: 804  VRAQAKEDGFVQTVFGRRLWLPEIKSPNGPRRAGAERAAINAPMQGTSADLIKMAMVELS 863

Query: 1056 KNARLKELGWKLLLQV 1071
               + ++L  K+++QV
Sbjct: 864  AWLKAEKLNSKMIMQV 879


>gi|418167954|ref|ZP_12804602.1| DNA polymerase I family protein [Streptococcus pneumoniae GA19077]
 gi|353837562|gb|EHE17644.1| DNA polymerase I family protein [Streptococcus pneumoniae GA19077]
          Length = 870

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 159/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 551  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYLQDLTQTGRLS 610

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 611  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 669

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      +  A++RR AK +NF + 
Sbjct: 670  EGADIHTSTAMRVF-----------------GIERP-----DNVTANDRRNAKAVNFGVV 707

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R  ++V TL  R R  
Sbjct: 708  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRREL 767

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 768  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 822


>gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126]
 gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126]
          Length = 936

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 152/304 (50%), Gaps = 29/304 (9%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL- 828
            G  A+  +I +      E  D I    E   + S   + +  L    +S K+GRVH    
Sbjct: 612  GQYATGEEILSKLANEHEIADKILEFREYQKLKSTYVDALPKL----ISKKDGRVHTDYR 667

Query: 829  NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLAN 887
                 TGRLS+  PNLQN P   +    IR+AF+    N  L+ ADY Q+ELRI+A  + 
Sbjct: 668  QAVAATGRLSSNNPNLQNIPIRTEKGRLIRKAFVPRDENYQLMAADYSQIELRIMAAFSQ 727

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             ++M++AFK G D H+ TA  ++                 G D      L D     RRK
Sbjct: 728  DEAMMEAFKNGRDIHATTAAKVF-----------------GVD------LDDVDPGMRRK 764

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF I YG +  GLA++  +S  EA   +  ++ E   V  + E  K+++R + +V 
Sbjct: 765  AKEVNFGIIYGISAFGLAQNLNISRTEASDIIKAYFKEFPRVHDYMEKVKEDARANEYVT 824

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            T+LGR R    I S  ++ R + ER AIN P+QGSAAD+   AM+ I K    + L  K+
Sbjct: 825  TILGRKRWLRDINSRNQTIRGYAERNAINAPIQGSAADMIKIAMINIHKWMEKENLKSKM 884

Query: 1068 LLQV 1071
            ++QV
Sbjct: 885  IMQV 888



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 56/246 (22%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           + +EF    E+  I K+  N  +D  V+ NYG++V G   DTM    L D   R      
Sbjct: 408 IADEFKEVLENEDITKIGQNLKYDIQVMRNYGVRVQGKMFDTMLAHYLLDPETR------ 461

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
                 +  VM+E+   Y                +S+ D+ G++ +K+    G +  + P
Sbjct: 462 -----HNMDVMAENYLNY--------------SPVSITDLIGKKGVKQ----GNMRDV-P 497

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
           VE++        + Y+  D+  TL+L   L+K++ E             ++     +  +
Sbjct: 498 VEDV--------VEYAGEDADITLQLKHILEKEIKE------------NNLESLLHDVEE 537

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
           P   +L +ME EG+ +D++ LS++ K        A  +  + A +        N+ S  Q
Sbjct: 538 PLSYVLAEMEYEGVKIDKDALSKMSKELETAALEAQEKIFELAGQE------FNIASPKQ 591

Query: 664 LRQLLF 669
           L ++LF
Sbjct: 592 LGEILF 597


>gi|416045430|ref|ZP_11575392.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype d
            str. I63B]
 gi|347995330|gb|EGY36518.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans serotype d
            str. I63B]
          Length = 962

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 153/294 (52%), Gaps = 32/294 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++    +E   + +    L E   +  L S +   LP     V+ + GRVH 
Sbjct: 639  KGAPSTNEEVL---EELAYSHELPKVLVEHRGLSKLKSTYTDKLP---QMVNPQTGRVHT 692

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   +   +IRQAFIA  G  +I ADY Q+ELRI+AHL
Sbjct: 693  SYHQAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 752

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +N + +++AF  G D H  TA  ++                       +P L+   + +R
Sbjct: 753  SNDQGLINAFAQGKDIHRSTAAEIF----------------------GLP-LEQVTSEQR 789

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+R   +S  +A++ +DL++     V T+    +++++   +
Sbjct: 790  RNAKAINFGLIYGMSSFGLSRQLGISRADAQRYMDLYFQRYPNVQTFIHDIREKAKAQGY 849

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM+++    R
Sbjct: 850  VETLFGRRLYLPEINSSNAMRRKGTERVAINAPMQGTAADIIKRAMIKLDGITR 903


>gi|320547600|ref|ZP_08041885.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
 gi|320447675|gb|EFW88433.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
          Length = 878

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 154/283 (54%), Gaps = 28/283 (9%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA- 849
            +S + E   I  L S +I+ LQ  +   K+G++H   L   T+TGRLS+  PNLQN P  
Sbjct: 573  VSKILEYRQIAKLQSTYIVGLQ--DFILKDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVR 630

Query: 850  LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
            LE+ R  IR+AF+    + ++++ DY Q+ELR+LAH++N + ++ AF  G D H+ TAM 
Sbjct: 631  LEQGRL-IRKAFVPETADEVLLSSDYSQIELRVLAHISNDEHLIAAFNEGADIHTSTAMR 689

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
            ++                 G +KP     +D   ++RR AK +NF I YG +  GLA + 
Sbjct: 690  VF-----------------GIEKP-----EDVTPNDRRNAKAVNFGIVYGISDYGLANNL 727

Query: 969  KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
             +  + AK+ ++ ++     +  + E   ++++   +V TL  R R  P I +   + R 
Sbjct: 728  GIPRKVAKQYIETYFERYPGIKDYMERVVRDAKDKGYVETLFHRRRELPDINARNFNVRQ 787

Query: 1029 HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
              ER AIN+P+QGSAAD+   AM+ + K     +   K+LLQV
Sbjct: 788  FAERTAINSPIQGSAADILKIAMINLDKALVEGKFKTKMLLQV 830


>gi|359407990|ref|ZP_09200462.1| DNA polymerase I [SAR116 cluster alpha proteobacterium HIMB100]
 gi|356676747|gb|EHI49096.1| DNA polymerase I [SAR116 cluster alpha proteobacterium HIMB100]
          Length = 950

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/258 (36%), Positives = 135/258 (52%), Gaps = 26/258 (10%)

Query: 816  NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
            +V+ + GRVH S + +   TGRLS+  PNLQN P    +  +IR AF+A PG  LI ADY
Sbjct: 665  SVNPRTGRVHTSFSMVGASTGRLSSSDPNLQNIPIRTAEGRQIRTAFVAKPGCKLISADY 724

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR++AH+A   SM++AFK G D H++TA  ++                       V
Sbjct: 725  SQIELRLVAHVAEETSMIEAFKDGVDIHAQTAAEVF----------------------GV 762

Query: 935  PLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
            P+  +   SE RR+AK +NF I YG +  GLAR   V   EA+  +  +      + ++ 
Sbjct: 763  PI--ETMDSETRRRAKAINFGIIYGISGFGLARQLSVPQGEARDYIKAYLERFPGIKSYM 820

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            +  K+ +R    V TL GR    P I     + R   ER AIN P+QGSAAD+   AM  
Sbjct: 821  DDAKQFARDHQFVETLFGRRIHIPQIAEKAPAMRGFAERQAINAPIQGSAADIIKRAMCR 880

Query: 1054 ISKNARLKELGWKLLLQV 1071
            +      ++L   +LLQV
Sbjct: 881  LPDALAAEQLDAVMLLQV 898



 Score = 48.9 bits (115), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 53/236 (22%)

Query: 434 DPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKV 493
           D S+ K+ HN  +D H+  + G                        GG+SL A+      
Sbjct: 426 DSSVLKIGHNLKYDAHIFLHEG-----------------------NGGFSLNAV------ 456

Query: 494 MSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERE 553
             +D       +  G TD   +  ++  ++     +K +   GK +   P  E+  ++  
Sbjct: 457 --DDTMCLSYVLDAGRTDRHGLDHLA-SNLLQVSTIKYEEVCGKGAKQIPFAEVDVQQ-- 511

Query: 554 LWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKME 613
              +Y+A D+  TL+L+  LK +L              + M   Y+   +P   IL KME
Sbjct: 512 -ACAYAAEDADITLRLWMMLKPRLAR------------EGMAHVYERLERPLIPILAKME 558

Query: 614 TEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
             G+ VD+  L       R   + AV      A  H    +  NV S  QL ++LF
Sbjct: 559 AAGIAVDQSILK------RLSADFAVRIAELEAEIHNQAGEPFNVASPKQLGEVLF 608


>gi|418147534|ref|ZP_12784301.1| DNA polymerase I family protein [Streptococcus pneumoniae GA13856]
 gi|353813732|gb|EHD93959.1| DNA polymerase I family protein [Streptococcus pneumoniae GA13856]
          Length = 877

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIALIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
 gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
          Length = 917

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 133/257 (51%), Gaps = 24/257 (9%)

Query: 816  NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
             ++ + GR+H S +     TGRLS+  PNLQN P    +  +IRQAFIA  G  L+ ADY
Sbjct: 636  QINPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAPQGYKLLAADY 695

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELRI+AHLA  + +LDAF+   D H  TA  ++                       V
Sbjct: 696  SQIELRIMAHLAKDEGLLDAFRHDLDVHRATAAEVFG----------------------V 733

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
            PL +D    +RR AK +NF + YG +  GLA+   V  +EA+  +D ++     VL + E
Sbjct: 734  PL-EDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEAQAYIDRYFARYPGVLAYME 792

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
              + ++     V TL GR    P I S   + R   ER AIN P+QG+AAD+   AM+ +
Sbjct: 793  RTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAINAPMQGTAADIMKRAMVAV 852

Query: 1055 SKNARLKELGWKLLLQV 1071
                R   L  +++LQV
Sbjct: 853  DNWLRESGLDARVILQV 869


>gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
 gi|417695166|ref|ZP_12344348.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47368]
 gi|418090669|ref|ZP_12727814.1| DNA polymerase I family protein [Streptococcus pneumoniae GA44452]
 gi|418109012|ref|ZP_12746042.1| DNA polymerase I family protein [Streptococcus pneumoniae GA49447]
 gi|418161097|ref|ZP_12797788.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17328]
 gi|418217803|ref|ZP_12844473.1| DNA polymerase I family protein [Streptococcus pneumoniae NP127]
 gi|418237631|ref|ZP_12864189.1| DNA polymerase I family protein [Streptococcus pneumoniae
            NorthCarolina6A-23]
 gi|419421859|ref|ZP_13962079.1| DNA polymerase I family protein [Streptococcus pneumoniae GA43264]
 gi|419458908|ref|ZP_13998844.1| DNA polymerase I family protein [Streptococcus pneumoniae GA02270]
 gi|419461181|ref|ZP_14001099.1| DNA polymerase I family protein [Streptococcus pneumoniae GA02714]
 gi|419509386|ref|ZP_14049031.1| DNA polymerase I family protein [Streptococcus pneumoniae NP141]
 gi|419529409|ref|ZP_14068944.1| DNA polymerase I family protein [Streptococcus pneumoniae GA40028]
 gi|421214026|ref|ZP_15670977.1| DNA polymerase I [Streptococcus pneumoniae 2070108]
 gi|421214308|ref|ZP_15671245.1| DNA polymerase I [Streptococcus pneumoniae 2070109]
 gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
 gi|332205064|gb|EGJ19127.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47368]
 gi|353766042|gb|EHD46582.1| DNA polymerase I family protein [Streptococcus pneumoniae GA44452]
 gi|353785845|gb|EHD66262.1| DNA polymerase I family protein [Streptococcus pneumoniae GA49447]
 gi|353830687|gb|EHE10816.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17328]
 gi|353877759|gb|EHE57600.1| DNA polymerase I family protein [Streptococcus pneumoniae NP127]
 gi|353895204|gb|EHE74943.1| DNA polymerase I family protein [Streptococcus pneumoniae
            NorthCarolina6A-23]
 gi|379533780|gb|EHY98992.1| DNA polymerase I family protein [Streptococcus pneumoniae GA02270]
 gi|379535217|gb|EHZ00421.1| DNA polymerase I family protein [Streptococcus pneumoniae GA02714]
 gi|379576313|gb|EHZ41241.1| DNA polymerase I family protein [Streptococcus pneumoniae GA40028]
 gi|379590860|gb|EHZ55696.1| DNA polymerase I family protein [Streptococcus pneumoniae GA43264]
 gi|379634572|gb|EHZ99136.1| DNA polymerase I family protein [Streptococcus pneumoniae NP141]
 gi|395578212|gb|EJG38736.1| DNA polymerase I [Streptococcus pneumoniae 2070108]
 gi|395583489|gb|EJG43933.1| DNA polymerase I [Streptococcus pneumoniae 2070109]
          Length = 877

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 159/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYLQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      +  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DNVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R  ++V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1]
 gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1]
          Length = 941

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 157/304 (51%), Gaps = 29/304 (9%)

Query: 770  GAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN 829
            G  A+  +I +      E   AI    ++  + S   +  LP   + ++ K G++H + N
Sbjct: 617  GQYATGEEILSKLANEHEIARAILDFRQMVKLKSTYVD-ALP---TMINSKTGKIHTTYN 672

Query: 830  -INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLELRILAHLAN 887
                 TGRLS+  PNLQN P   +   +IR+AF+    N  L+ ADY Q+ELRI+A  + 
Sbjct: 673  QFVAATGRLSSINPNLQNIPIRTERGREIRKAFVPRDENHILLAADYSQIELRIMAAFSG 732

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
             +SM++AFK G D H+ TA  ++                       VPL ++  +  RRK
Sbjct: 733  DESMIEAFKNGRDIHATTAAKIFQ----------------------VPL-EEVTSDMRRK 769

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK  NF I YG +  GL++   +S  EAK+ +D ++ E   V  + +   +++R D +V 
Sbjct: 770  AKTANFGIIYGISAFGLSQRLSISRTEAKEIIDAYFKEFPAVKEYMDRAIEKARNDEYVE 829

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            TLLGR R    I S   + R   ER AIN P+QGSAAD+   AM+++    + + L  K+
Sbjct: 830  TLLGRRRYLRDINSRNATMRGFAERNAINAPIQGSAADLIKVAMIDVHNWMKKENLKSKM 889

Query: 1068 LLQV 1071
            +LQV
Sbjct: 890  ILQV 893



 Score = 43.5 bits (101), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 125/320 (39%), Gaps = 82/320 (25%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L +  P F++  I K+  N  +D  +L+NY ++V G   DTM    L +     EG +S
Sbjct: 413 ILEQLKPVFQNEKILKIGQNIKYDLLILKNYDVEVKGKLYDTMLAHYLIEP----EGKHS 468

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
           ++ L       +E    YQ               +S+ ++ G++  K  G+   +  +  
Sbjct: 469 MDWL-------AEQYLNYQ--------------PVSITELIGKKG-KNQGNMRDVD-VDQ 505

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
           V E   E+ ++ +           KL   LK+ LLE                  + E   
Sbjct: 506 VTEYASEDADITLQLKE-------KLDPFLKENLLE----------------KLFYEVEN 542

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
           P   +L +ME EG+ +D + L+E+      E +   N+  + A          N+ S  Q
Sbjct: 543 PLINVLTEMEFEGIRIDTKSLAEMSISLEKESKEIENKVYEIAGVR------FNLASPKQ 596

Query: 664 LRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRN-------------- 709
           L  +LF          E L ++   K   T G  A G++  SK  N              
Sbjct: 597 LGDVLF----------EKLKLDPKAKKTKT-GQYATGEEILSKLANEHEIARAILDFRQM 645

Query: 710 ITLRSIGVD-LPTEMYTATG 728
           + L+S  VD LPT + + TG
Sbjct: 646 VKLKSTYVDALPTMINSKTG 665


>gi|357060797|ref|ZP_09121561.1| hypothetical protein HMPREF9332_01118 [Alloprevotella rava F0323]
 gi|355375630|gb|EHG22913.1| hypothetical protein HMPREF9332_01118 [Alloprevotella rava F0323]
          Length = 921

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 144/288 (50%), Gaps = 25/288 (8%)

Query: 792  ISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPAL 850
            +  + +   +  L+S ++  L    ++   G +H S N   T TGRLS+  PNLQN P  
Sbjct: 617  VQKILDYRGLKKLLSTYVEALP-KLINPATGHIHTSFNQAVTATGRLSSSNPNLQNIPVR 675

Query: 851  EKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 910
             +D  +IR+AFI   G     ADY Q+ELRI+AHL+  + M++AF AG D H+ TA  ++
Sbjct: 676  GEDGREIRKAFIPEAGEIFFSADYSQIELRIMAHLSGDEHMIEAFNAGHDVHAATAARIF 735

Query: 911  PHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKV 970
                            H +       +KD    ERRKAK  NF I YG +  GLA    V
Sbjct: 736  ----------------HKD-------IKDISQDERRKAKTANFGIIYGISAFGLAERMDV 772

Query: 971  SVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHI 1030
            S  EAK+ +D ++    ++  +       +R   ++ T  GR R  P I S     R + 
Sbjct: 773  SRTEAKELIDSYFEMYPKIKEYIAKAVDTAREKGYIETEFGRRRYLPDINSRNAVVRGYA 832

Query: 1031 ERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFS 1078
            ER A+N P+QG+AAD+   AM+ + +    +    +++LQV    +FS
Sbjct: 833  ERNAVNAPIQGTAADIIKIAMIRVQQRLDAEGCKARMMLQVHDELNFS 880



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 128/340 (37%), Gaps = 72/340 (21%)

Query: 332 EILRSKLASFYSNVMVVDNVSAAKKVV-WMLTNKYKHLVHACDTEVAKIDVKQETPVDHG 390
           E L S+L +      +++N + AK++  ++LTN+    + + DTE   I+      V   
Sbjct: 316 ERLFSRLENLSYEYKLIENETEAKELADFLLTNE----IFSLDTETTSIEALDAKLVG-- 369

Query: 391 EVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHV 450
             + FS       DF      + V       + +L  F P +E+P I KV  N  +D  V
Sbjct: 370 --LSFST-----EDFRAW--YVPVSRETEKAKKILEIFRPVYENPKILKVGQNLKYDLTV 420

Query: 451 LENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNT 510
           L NYG+ +SG   DTM    L     R    Y  E     + +  E+         KG  
Sbjct: 421 LANYGIHLSGPLFDTMLAHYLIQPELRHNMDYLAEIYLNYKTIHIEELIG-----PKGRG 475

Query: 511 DEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLY 570
            +  MG +  KDI+                                 Y+  D+  TL+L 
Sbjct: 476 QKN-MGDLEPKDIY--------------------------------KYACEDADVTLRLM 502

Query: 571 KSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKV 630
           K L ++L +              + + +Q    P   +L +ME  G+++D E L E+E  
Sbjct: 503 KPLAEELRK------------NGVEEVFQNIEMPLMPVLAQMERNGVVLDTETLKEVEHD 550

Query: 631 ARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFG 670
             A  +       + A           + S  Q+ ++LFG
Sbjct: 551 FTAHLQTLEKDIYELAGHE------FTINSPRQVGEVLFG 584


>gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7]
 gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7]
          Length = 886

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 155/295 (52%), Gaps = 33/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCS-LNINTETGRL 837
            A D +  L E   I   I  +  I  +Q + + G       + G++H   +    +TGRL
Sbjct: 566  AVDVLEQLKEQAPIVEHILEYRQIAKIQSTYIEGLLKVIDKETGKIHTRYMQTIAQTGRL 625

Query: 838  SARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELRILAHLANCKSMLDAFK 896
            S+  PNLQN P   ++  KIRQAF+ +  G  +  +DY Q+ELR+L H++N K + +AF 
Sbjct: 626  SSVDPNLQNIPIRLEEGRKIRQAFVPSHEGWKIFASDYSQIELRVLGHVSNDKLLKEAFI 685

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D HS TAM ++                 G   P     ++  +  RR+AK +NF I 
Sbjct: 686  EGQDIHSSTAMRVF-----------------GISSP-----EEVSSEMRRRAKAVNFGIV 723

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+++  +S +EA++ +D ++ +   V T+ E   +E++    V TL  R R  
Sbjct: 724  YGISDYGLSQNLGISRKEAQRFIDTYFEKYPGVKTYMEDIVREAKDKGFVETLFHRRRYL 783

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R+  ER AINTP+QGSAAD+   AM+++ +  +  +L   +LLQV
Sbjct: 784  PEINSRNFNLRSFAERTAINTPIQGSAADIIKIAMIKMDERLKESKLKATMLLQV 838


>gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002]
          Length = 850

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 141/261 (54%), Gaps = 26/261 (9%)

Query: 812  LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
            LQ  N S   GRVH + +   T TGRL++  PNLQN P    +   IR+ F+   G+ LI
Sbjct: 567  LQAINPSS--GRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLI 624

Query: 871  VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
             ADY Q+ELRILAH++  + ++ AFK   D HS+TA  ++                 G D
Sbjct: 625  DADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVF-----------------GVD 667

Query: 931  KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
                  + D     R +AK +NF I YG +  GLARD K+S +EA + ++ ++    +V 
Sbjct: 668  ------IADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKVK 721

Query: 991  TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
             + +   K +R +  V TL  R R    IKS  R+ R + ER A+N+P+QGSAAD+   A
Sbjct: 722  EYIDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLA 781

Query: 1051 MLEISKNARLKELGWKLLLQV 1071
            M+++ +  +   L  K++LQV
Sbjct: 782  MIKVYQKLKENNLKSKIILQV 802


>gi|387930085|ref|ZP_10132762.1| DNA polymerase I [Bacillus methanolicus PB1]
 gi|387586903|gb|EIJ79227.1| DNA polymerase I [Bacillus methanolicus PB1]
          Length = 877

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/258 (37%), Positives = 142/258 (55%), Gaps = 27/258 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADY 874
            V  K  +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAFI    + +I  ADY
Sbjct: 596  VDPKTDKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSEKDWVIFAADY 655

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+AN + ++ AFK   D H++TAM ++ H+                     
Sbjct: 656  SQIELRVLAHIANDEKLIQAFKEDLDIHTKTAMEVF-HVE-------------------- 694

Query: 935  PLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
               KD   S  RR AK +NF I YG +  GL++   ++ +EA K ++ +      V  + 
Sbjct: 695  ---KDEVTSNMRRHAKAVNFGIVYGISDYGLSQSLGITRKEAAKFIERYLESYPGVKEYM 751

Query: 994  EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
            E   KE++   +V T+L R R  P I S   + R+  ER A+NTP+QGSAAD+   AM++
Sbjct: 752  EEIVKEAKQIGYVSTILHRRRYLPEITSRNYNVRSFAERTAMNTPIQGSAADIIKKAMID 811

Query: 1054 ISKNARLKELGWKLLLQV 1071
            +++  + + L  +LLLQV
Sbjct: 812  MAERLKAEGLKTRLLLQV 829


>gi|418183832|ref|ZP_12820382.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47283]
 gi|418220828|ref|ZP_12847482.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47751]
 gi|419481101|ref|ZP_14020897.1| DNA polymerase I family protein [Streptococcus pneumoniae GA40563]
 gi|421273815|ref|ZP_15724651.1| DNA polymerase I family protein [Streptococcus pneumoniae SPAR55]
 gi|353852853|gb|EHE32838.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47283]
 gi|353875751|gb|EHE55601.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47751]
 gi|379582508|gb|EHZ47386.1| DNA polymerase I family protein [Streptococcus pneumoniae GA40563]
 gi|395871891|gb|EJG82992.1| DNA polymerase I family protein [Streptococcus pneumoniae SPAR55]
          Length = 877

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 159/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 558  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYLQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      +  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DNVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R  ++V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|345891706|ref|ZP_08842544.1| hypothetical protein HMPREF1022_01204 [Desulfovibrio sp. 6_1_46AFAA]
 gi|345047998|gb|EGW51846.1| hypothetical protein HMPREF1022_01204 [Desulfovibrio sp. 6_1_46AFAA]
          Length = 922

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 156/304 (51%), Gaps = 28/304 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            KG  AS ++    +   R A   + ++ +   ++ + S ++ PL    +    GR+H + 
Sbjct: 594  KGGQASTSQQTLEKLAGRHAV--VDSILQFRKLEKMRSTYLDPL--PRLVDGQGRIHTTF 649

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGRLS+  PNLQN P       ++R  FIA PG +L+ ADY Q+ELR+LAH++ 
Sbjct: 650  NQKATATGRLSSSNPNLQNIPVRGPLGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQ 709

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
              ++LDAF+ G D H+RTA  +Y      ++ G+V                     +RR 
Sbjct: 710  DAALLDAFRQGEDIHARTAALIY-----DLQAGEV------------------SPDQRRN 746

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF + YG     L ++ K+S  EAK+ +  ++     +  + E  +  ++   +V 
Sbjct: 747  AKTINFGLIYGMGAQKLGQELKISTAEAKEFITRYFERLTGLKAFYENVEATAKRQGYVT 806

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            TL GR R  P I S          R AINT +QGSAAD+   AML ++ +A L+ +  +L
Sbjct: 807  TLGGRRRLLPDILSANGQAFALARRQAINTVIQGSAADIIKLAMLAVAHDAELRRMDARL 866

Query: 1068 LLQV 1071
            LLQV
Sbjct: 867  LLQV 870


>gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
 gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
          Length = 922

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 156/304 (51%), Gaps = 28/304 (9%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
            KG  AS ++    +   R A   + ++ +   ++ + S ++ PL    +    GR+H + 
Sbjct: 594  KGGQASTSQQTLEKLAGRHAV--VDSILQFRKLEKMRSTYLDPL--PRLVDGQGRIHTTF 649

Query: 829  NIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
            N   T TGRLS+  PNLQN P       ++R  FIA PG +L+ ADY Q+ELR+LAH++ 
Sbjct: 650  NQKATATGRLSSSNPNLQNIPVRGPLGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQ 709

Query: 888  CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
              ++LDAF+ G D H+RTA  +Y      ++ G+V                     +RR 
Sbjct: 710  DAALLDAFRQGEDIHARTAALIY-----DLQAGEV------------------SPDQRRN 746

Query: 948  AKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVH 1007
            AK +NF + YG     L ++ K+S  EAK+ +  ++     +  + E  +  ++   +V 
Sbjct: 747  AKTINFGLIYGMGAQKLGQELKISTAEAKEFITRYFERLTGLKAFYENVEATAKRQGYVT 806

Query: 1008 TLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKL 1067
            TL GR R  P I S          R AINT +QGSAAD+   AML ++ +A L+ +  +L
Sbjct: 807  TLGGRRRLLPDILSANGQAFALARRQAINTVIQGSAADIIKLAMLAVAHDAELRRMDARL 866

Query: 1068 LLQV 1071
            LLQV
Sbjct: 867  LLQV 870


>gi|398355812|ref|YP_006401276.1| DNA polymerase I [Sinorhizobium fredii USDA 257]
 gi|390131138|gb|AFL54519.1| DNA polymerase I [Sinorhizobium fredii USDA 257]
          Length = 1004

 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 143/296 (48%), Gaps = 36/296 (12%)

Query: 823  RVH-CSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
            RVH C     T TGRLS+  PNLQN P    +  KIR AF+A PG  L+ ADY Q+ELR+
Sbjct: 726  RVHTCYALAATTTGRLSSSEPNLQNIPVRTAEGRKIRTAFVATPGRKLVSADYSQIELRV 785

Query: 882  LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
            LAH+A+   +  AF  G D H+ TA  M+                       VP+  D  
Sbjct: 786  LAHVADIPQLRQAFADGVDIHAMTASEMF----------------------GVPV--DGM 821

Query: 942  ASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
             SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + E  K  +
Sbjct: 822  PSEIRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFA 881

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            R   +V T+ GR   +P I+S   S R   ERA+IN P+QGSAAD+   AM+++      
Sbjct: 882  REHGYVETIFGRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEE 941

Query: 1061 KELGWKLLLQVLFFFSFSF------FSIIVIVSCQGIVLANAMHPMFGKSSRLHYD 1110
             +L  ++LLQV     F         ++ VIVS    V+ NA  P       L  D
Sbjct: 942  AKLSARMLLQVHDELIFEVEEGEIESTVPVIVS----VMENAAMPALDMRVPLKVD 993


>gi|417697520|ref|ZP_12346693.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41317]
 gi|419452313|ref|ZP_13992288.1| DNA polymerase I family protein [Streptococcus pneumoniae EU-NP03]
 gi|332201961|gb|EGJ16030.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41317]
 gi|379628276|gb|EHZ92880.1| DNA polymerase I family protein [Streptococcus pneumoniae EU-NP03]
          Length = 877

 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   +   T+TGRLS
Sbjct: 558  AVDVLERLAPIALIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 618  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      D  A++RR AK +NF + 
Sbjct: 677  EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R   +V TL  R R  
Sbjct: 715  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 775  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829


>gi|386846779|ref|YP_006264792.1| DNA polymerase I [Actinoplanes sp. SE50/110]
 gi|359834283|gb|AEV82724.1| DNA polymerase I [Actinoplanes sp. SE50/110]
          Length = 899

 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 88/253 (34%), Positives = 140/253 (55%), Gaps = 25/253 (9%)

Query: 821  NGRVHCSLNINTE-TGRLSARRPNLQNQPALEKDRYKIRQAFIAVPG-NSLIVADYGQLE 878
            +GR+H + N     TGRLS+  PNLQN P   ++  +IR+AF+   G   L+ ADY Q+E
Sbjct: 621  DGRIHTTFNQTVAATGRLSSTDPNLQNIPIRTEEGRRIRRAFVVGGGFEQLMTADYSQIE 680

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            +RI+AHL+   +++ AF +G DFH+ TA +++      VE G+V                
Sbjct: 681  MRIMAHLSEDAALIAAFNSGADFHAVTASSVFQ-----VELGEVT--------------- 720

Query: 939  DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
               A +RRK K +N+ +AYG +  GL+    +S +EAK  ++ ++     V  + ++   
Sbjct: 721  ---ADQRRKIKAMNYGLAYGLSSYGLSNQLTISNDEAKTLMEEYFQRFGGVRDYLQSVVA 777

Query: 999  ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
            ++  D +  T+LGR R  P + S  R +R   +R A+N P+QGSAAD+   AML++    
Sbjct: 778  QAGKDGYTATILGRRRYLPDLSSDNRQRREMAQRMALNAPIQGSAADIIKVAMLKVDAAL 837

Query: 1059 RLKELGWKLLLQV 1071
            R   L  ++LLQV
Sbjct: 838  RASGLTSRMLLQV 850



 Score = 44.7 bits (104), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
           E  QP   +L +ME +G+  D EYLSE+E    AE +AA        + H    +  N+G
Sbjct: 498 EVEQPLSVVLAEMEGKGIAADTEYLSELESTFGAEVKAAQQ------AAHEVHGREFNLG 551

Query: 660 SDTQLRQLLF 669
           S  QL+++LF
Sbjct: 552 SPKQLQEILF 561


>gi|357403761|ref|YP_004915685.1| DNA polymerase I [Methylomicrobium alcaliphilum 20Z]
 gi|351716426|emb|CCE22086.1| DNA polymerase I (POL I) [Methylomicrobium alcaliphilum 20Z]
          Length = 907

 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 139/263 (52%), Gaps = 27/263 (10%)

Query: 810  LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
            LP Q   V+ K GRVH S +     TGRLS+  PNLQN P    +  +IRQAFIA PG  
Sbjct: 623  LPQQ---VNPKTGRVHTSYHQAVAATGRLSSSDPNLQNIPIRSPEGRRIRQAFIAPPGYV 679

Query: 869  LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
            L+ ADY Q+ELRI+AHL+    +L AFK G D HS TA  ++      VE  QV      
Sbjct: 680  LVAADYSQIELRIMAHLSGDAGLLAAFKQGQDIHSATAAEVF-----GVEPEQVT----- 729

Query: 929  EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
                         A  RR AK +NF + YG +  GLA+   ++  +A+  +D+++     
Sbjct: 730  -------------ADLRRSAKAINFGLIYGMSSFGLAQQLGLTRGQAQSYIDMYFARYPG 776

Query: 989  VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
            V  + +  ++ ++   +V TL GR    P I S   ++R + ER AIN P+QG+AAD+  
Sbjct: 777  VKAFMDNIRELAKNQGYVETLFGRRLYLPEINSRNPARRQYAERTAINAPMQGTAADIIK 836

Query: 1049 CAMLEISKNARLKELGWKLLLQV 1071
             AM+   +  +      ++++QV
Sbjct: 837  RAMIACDRWLQTDSPDARMIMQV 859



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 55/246 (22%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L +  P  E+P+  K+  N  +D +VL N+G+++ G   DTM  + + +S         
Sbjct: 380 VLEKMRPLLENPNKAKLGQNLKYDANVLANHGIELRGIAHDTMLESYVLNS--------- 430

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
                               + +K N D+        K       +  +  AGK +   P
Sbjct: 431 --------------------NATKHNMDD------LAKTYLNYTTIHYEDVAGKGAKQIP 464

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
            +E+  E+      Y+A D+  TL+L++ L KKL       D  P    S+   Y+E   
Sbjct: 465 FQEVAIEQ---ATPYAAEDADITLRLHEVLSKKL-------DQNP----SLVQLYREIEI 510

Query: 604 PFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQ 663
           P  E+L ++E  G+L+D E L      AR  QE A          H    +  N+GS  Q
Sbjct: 511 PLVEVLSRIERNGVLLDTEML------ARQSQELAAQIASIEQHAHDLAGQAFNLGSPKQ 564

Query: 664 LRQLLF 669
           ++ +++
Sbjct: 565 IQSIIY 570


>gi|336234370|ref|YP_004586986.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
 gi|335361225|gb|AEH46905.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
          Length = 878

 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/251 (36%), Positives = 147/251 (58%), Gaps = 25/251 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAFI + P   +  ADY Q+ELR
Sbjct: 603  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELR 662

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+AN ++++DAF+ G D H++TAM+++ H+               E+  P       
Sbjct: 663  VLAHIANDENLIDAFRHGLDIHTKTAMDIF-HVSK-------------EEVTP------- 701

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GL+++  ++ +EA + +  ++     V  + +   +E+
Sbjct: 702  --NMRRQAKAVNFGIVYGISDYGLSQNLNITRKEAAEFIKRYFEIFPGVKQYMKDIVQEA 759

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++SK  + 
Sbjct: 760  KQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDLSKRLQK 819

Query: 1061 KELGWKLLLQV 1071
            + +  ++LLQV
Sbjct: 820  ENMKARMLLQV 830


>gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866]
          Length = 935

 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 153/294 (52%), Gaps = 32/294 (10%)

Query: 769  KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHC 826
            KGA ++N ++    +E   + +    L E   +  L S +   LP     V+ + GRVH 
Sbjct: 612  KGAPSTNEEVL---EELSYSHELPKILVEHRGLSKLKSTYTDKLP---QMVNSQTGRVHT 665

Query: 827  SLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHL 885
            S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G S++ ADY Q+ELRI+AHL
Sbjct: 666  SYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725

Query: 886  ANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASER 945
            +  + +++AF  G D H  TA  ++         G  L E   E              +R
Sbjct: 726  SGDQGLINAFSQGKDIHRSTAAEIF---------GVSLDEITSE--------------QR 762

Query: 946  RKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNH 1005
            R AK +NF + YG +  GL+R   +S  +A+K +DL++     V  +    +++++   +
Sbjct: 763  RNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMDLYFQRYPSVQQFMTDIREKAKAQGY 822

Query: 1006 VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
            V TL GR    P I S    +R   ER AIN P+QG+AAD+   AM+++ +  R
Sbjct: 823  VETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVIR 876



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 145/356 (40%), Gaps = 95/356 (26%)

Query: 326 ENSEKLEILRSKLASFYSNVMV---VDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVK 382
           EN+ K++I R+K  S  +   +   ++ ++AAK +             A DTE   +D  
Sbjct: 327 ENTPKIQIDRTKYESLLTQADLTHWIEKLNAAKLI-------------AVDTETDSLDYM 373

Query: 383 QETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGG----RDLLNEFAPFFEDPSIK 438
               V     I F++ +G  A        + +D LD          L    P  E+P+I 
Sbjct: 374 SANLVG----ISFALENGEAAYL-----PLQLDYLDAPKTLEKSTALAAIKPILENPNIH 424

Query: 439 KVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDK 498
           K+  N  FD  +   +G+++ G   DTM ++   +S+    G ++++ L   ++ +  + 
Sbjct: 425 KIGQNIKFDESIFARHGIELQGVEFDTMLLSYTLNST----GRHNMDDLA--KRYLGHET 478

Query: 499 KAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISY 558
            A++    KG +      +++   I                   P+E+           Y
Sbjct: 479 IAFESIAGKGKS------QLTFNQI-------------------PLEQ--------ATEY 505

Query: 559 SAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGM 617
           +A D+  T+KL ++L        W KL  +P    ++ + Y+    P   +L +ME  G+
Sbjct: 506 AAEDADVTMKLQQAL--------WLKLQEEP----TLVELYKTMELPLLHVLSRMERTGV 553

Query: 618 LVDREYL----SEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLF 669
           L+D   L    +EI     A +E A      +A    P     N+ S  QL+++LF
Sbjct: 554 LIDSNALFMQSNEIATRLTALEEQA------YALAGQP----FNLASTKQLQEILF 599


>gi|399076674|ref|ZP_10752127.1| DNA polymerase I [Caulobacter sp. AP07]
 gi|398037018|gb|EJL30222.1| DNA polymerase I [Caulobacter sp. AP07]
          Length = 978

 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 95/255 (37%), Positives = 130/255 (50%), Gaps = 26/255 (10%)

Query: 819  GKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQL 877
            G   R+H S  +  T TGRLS+  PNLQN P   ++  KIR+AFIA PG  LI ADY Q+
Sbjct: 696  GGGNRIHTSYALAATTTGRLSSSDPNLQNIPIRTEEGRKIRKAFIAAPGKVLISADYSQI 755

Query: 878  ELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLL 937
            ELR+LAH+ +   +  AF+ G D H+ TA  M+                       VP+ 
Sbjct: 756  ELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMF----------------------NVPI- 792

Query: 938  KDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEAR 996
             +   SE RR+AK +NF I YG +  GLA    +   EA   +  ++     +  + EA 
Sbjct: 793  -EGMPSEVRRRAKAINFGIVYGISAFGLANQLSIPQGEAGAYIKTYFERFPGIQAYMEAT 851

Query: 997  KKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISK 1056
            K   R   +V T+ GR    P I   + + R   ERAAIN P+QG+AADV   AM+ +  
Sbjct: 852  KAFVREHGYVTTIFGRKINIPDIGGKSVAHRQFAERAAINAPIQGAAADVMRRAMVRMPG 911

Query: 1057 NARLKELGWKLLLQV 1071
              +   L  K+LLQV
Sbjct: 912  ALKAAGLSSKMLLQV 926


>gi|423718989|ref|ZP_17693171.1| DNA polymerase I [Geobacillus thermoglucosidans TNO-09.020]
 gi|383367892|gb|EID45167.1| DNA polymerase I [Geobacillus thermoglucosidans TNO-09.020]
          Length = 877

 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/251 (36%), Positives = 147/251 (58%), Gaps = 25/251 (9%)

Query: 823  RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFI-AVPGNSLIVADYGQLELR 880
            +VH   N   T+TGRLS+  PNLQN P   ++  KIRQAFI + P   +  ADY Q+ELR
Sbjct: 602  KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELR 661

Query: 881  ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
            +LAH+AN ++++DAF+ G D H++TAM+++ H+               E+  P       
Sbjct: 662  VLAHIANDENLIDAFRHGLDIHTKTAMDIF-HVSK-------------EEVTP------- 700

Query: 941  FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
              + RR+AK +NF I YG +  GL+++  ++ +EA + +  ++     V  + +   +E+
Sbjct: 701  --NMRRQAKAVNFGIVYGISDYGLSQNLNITRKEAAEFIKRYFEIFPGVKQYMKDIVQEA 758

Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
            +   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++SK  + 
Sbjct: 759  KQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDLSKRLQK 818

Query: 1061 KELGWKLLLQV 1071
            + +  ++LLQV
Sbjct: 819  ENMKARMLLQV 829


>gi|419487810|ref|ZP_14027564.1| DNA polymerase I family protein [Streptococcus pneumoniae GA44386]
 gi|379590973|gb|EHZ55808.1| DNA polymerase I family protein [Streptococcus pneumoniae GA44386]
          Length = 852

 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 159/295 (53%), Gaps = 34/295 (11%)

Query: 788  ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
            A D +  L  +  I   I ++  I  +Q + V G       +G++H   L   T+TGRLS
Sbjct: 533  AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYLQDLTQTGRLS 592

Query: 839  ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
            +  PNLQN PA LE+ R  IR+AF+    +S++++ DY Q+ELR+LAH++  + ++ AF+
Sbjct: 593  SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 651

Query: 897  AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
             G D H+ TAM ++                 G ++P      +  A++RR AK +NF + 
Sbjct: 652  EGADIHTSTAMRVF-----------------GIERP-----DNVTANDRRNAKAVNFGVV 689

Query: 957  YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
            YG +  GL+ +  +S +EAK  +D ++     +  + +   +E+R  ++V TL  R R  
Sbjct: 690  YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRREL 749

Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
            P I S   + R   ER AIN+P+QGSAAD+   AM+++ K         K+LLQV
Sbjct: 750  PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 804


>gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B]
 gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B]
          Length = 928

 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/262 (35%), Positives = 139/262 (53%), Gaps = 35/262 (13%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++   GRVH S +   T TGRLS+  PNLQN P   +   +IRQAF+A  G+ ++  DY 
Sbjct: 647  INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEAGRRIRQAFVAPSGHKILAVDYS 706

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  +++LDAF+ G D H+ T          A E   V +E          
Sbjct: 707  QIELRIMAHLSGDQALLDAFRDGKDIHAAT----------AAEIMGVSIE---------- 746

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
               D  + +RR+AK +NF + YG +  GLA+   +   EA+  +D ++     V+ + E 
Sbjct: 747  ---DVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDTYFERYPGVMQYMED 803

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
             +  +    +V T+ GR    P IKS    +R   ERAAIN P+QG+AAD+   AML + 
Sbjct: 804  TRSTAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVD 863

Query: 1056 K------NARLKELGWKLLLQV 1071
            +      N R+     KLL+QV
Sbjct: 864  QWIQEEGNGRV-----KLLMQV 880


>gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains
            [Magnetospirillum magnetotacticum MS-1]
          Length = 485

 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/254 (37%), Positives = 134/254 (52%), Gaps = 26/254 (10%)

Query: 820  KNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLE 878
            +  RVH S ++  T TGRLS+  PNLQN P   ++  +IR+AF+A  G  LI ADY Q+E
Sbjct: 204  ETNRVHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIE 263

Query: 879  LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
            LR+LAH+A+   + +AF+ G D H+ TA  M+                       VPL  
Sbjct: 264  LRLLAHIADIPQLREAFEQGLDIHAATASAMFG----------------------VPL-- 299

Query: 939  DAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARK 997
            D    + RR+AK +NF I YG +  GLA    +  EEA   +  ++     +  + +  K
Sbjct: 300  DQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTK 359

Query: 998  KESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKN 1057
            K  R   +V TL GR   +P I+S   S+R  +ER AIN P+QG+AAD+   AM  +   
Sbjct: 360  KSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRAMTRMEAA 419

Query: 1058 ARLKELGWKLLLQV 1071
               K L  ++LLQV
Sbjct: 420  LEAKRLTARMLLQV 433


>gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8]
 gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8]
          Length = 908

 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 131/239 (54%), Gaps = 24/239 (10%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            +  + GRVH S +   T TGRLS+  PNLQN P   ++  +IRQAFIA  G  L+ ADY 
Sbjct: 627  IHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRTQEGRRIRQAFIAPKGYKLLAADYS 686

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELRI+AHL+  + +L AF+ G D H  TA  ++         G  + E  G+      
Sbjct: 687  QIELRIMAHLSGDRGLLTAFEHGEDIHKATAAEVF---------GVTVDEVTGD------ 731

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                    +RR AK +NF + YG +  GL+R  +V  + A++ +D ++     VL + + 
Sbjct: 732  --------QRRSAKAINFGLIYGMSAFGLSRQLEVDRKTAQEYIDRYFERYPGVLKYMDN 783

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
             +K++  D +V TL GR    P I +  +  +   ER AIN P+QG+AAD+   AM+E+
Sbjct: 784  IRKQAHDDGYVETLYGRRLYLPEINARNKQLQQAAERTAINAPMQGTAADIIKRAMIEV 842



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 105/251 (41%), Gaps = 65/251 (25%)

Query: 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYS 483
           +L +  P  EDP  KKV  N  +D +VL N+ +++ G   DTM  + + +S         
Sbjct: 380 VLEQLKPLLEDPKHKKVGQNLKYDKNVLANHDIQLEGIAEDTMVESYVLNS--------- 430

Query: 484 LEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAP 543
                G R  M    + Y  + +   T E   GK + +  F +  L+   SAG       
Sbjct: 431 ----VGTRHDMDSLARTYLDEETI--TYESIAGKGAKQLTFNQIDLE---SAG------- 474

Query: 544 VEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQ 603
                         Y+A D+  TL+L+++L  +L     K  GK      +   Y+E   
Sbjct: 475 -------------PYAAEDADITLRLHQTLAPRL-----KDTGK------LESVYREIDL 510

Query: 604 PFGEILVKMETEGMLVD----REYLSEI-EKVARAEQEAAVNRFRKWASKHCPDAKYMNV 658
           P   +L +ME  G L+     R++  E+ E++A  E+EA           H    +  N+
Sbjct: 511 PLVPVLSRMEQRGTLISASTLRQHSQELAERMAELEKEA-----------HEVAGEAFNL 559

Query: 659 GSDTQLRQLLF 669
           GS  QL+ +L+
Sbjct: 560 GSTKQLQAILY 570


>gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16]
 gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus]
 gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16]
          Length = 876

 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/257 (35%), Positives = 148/257 (57%), Gaps = 25/257 (9%)

Query: 817  VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADY 874
            V    G+VH   N   T+TGRLS+  PNLQN P   ++  KIRQAF+    + LI  ADY
Sbjct: 595  VRPDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADY 654

Query: 875  GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
             Q+ELR+LAH+A+  ++++AF+   D H++TAM+++ H+                     
Sbjct: 655  SQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIF-HVSE------------------- 694

Query: 935  PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
               ++  A+ RR+AK +NF I YG +  GLA++  ++ +EA + ++ ++     V  + E
Sbjct: 695  ---EEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYME 751

Query: 995  ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
               +E++   +V TLL R R  P I S   + R+  ER A+NTP+QGSAAD+   AM+++
Sbjct: 752  NIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDL 811

Query: 1055 SKNARLKELGWKLLLQV 1071
            +   + ++L  +LLLQV
Sbjct: 812  AARLKEEQLQARLLLQV 828


>gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187]
 gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187]
          Length = 910

 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 140/268 (52%), Gaps = 37/268 (13%)

Query: 795  LCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALE 851
            L E  S+  L S +   LPL    ++   GRVH S +   T TGRLS+  PNLQN P   
Sbjct: 608  LLEHRSLSKLKSTYTDKLPLM---IAPSTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRT 664

Query: 852  KDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTA---MN 908
            ++  +IRQAF+A  G  ++ ADY Q+ELRI+AHL+    +L AF  G D H  TA   MN
Sbjct: 665  EEGRRIRQAFVADHGYKIVAADYSQIELRIMAHLSEDDGLLQAFAHGQDIHRATAAEIMN 724

Query: 909  MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARD 967
            + P                           +A  SE RR AK +NF + YG +  GLA+ 
Sbjct: 725  ITP---------------------------EAVTSEQRRNAKAINFGLIYGMSAFGLAKQ 757

Query: 968  WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
              +   EA++ +D ++     VLT+ E  ++++    +V TL GR    P IK+     R
Sbjct: 758  LGIPRGEAQRYMDRYFERYPGVLTYMERTREQAEQAGYVETLFGRRLYLPDIKAKNMGLR 817

Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEIS 1055
               ERAAIN P+QG+AAD+   AM++++
Sbjct: 818  KAAERAAINAPMQGTAADIIKRAMIKLA 845


>gi|407975471|ref|ZP_11156376.1| DNA polymerase I [Nitratireductor indicus C115]
 gi|407429099|gb|EKF41778.1| DNA polymerase I [Nitratireductor indicus C115]
          Length = 983

 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 98/259 (37%), Positives = 135/259 (52%), Gaps = 29/259 (11%)

Query: 817  VSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
            ++ + GRVH S  + +T TGRLS+  PNLQN P    +  KIR AFIA  G  LI ADY 
Sbjct: 698  INAETGRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRAAFIAPRGRKLISADYS 757

Query: 876  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
            Q+ELR+LAH+A+   +  AF  G D H+ TA  M+              +   E  PP  
Sbjct: 758  QIELRVLAHVADIPELKKAFADGLDIHAMTASEMF--------------DVPVEGMPP-- 801

Query: 936  LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
                     RR+AK +NF I YG +  GLA    +  EEA   +  ++     +  + + 
Sbjct: 802  -------EVRRRAKAINFGIIYGISAFGLANQLGIPREEAGAYIKRYFERFPGIKDYMDN 854

Query: 996  RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADV---AMCAML 1052
             K ++R   +V T+ GR   +P I+S     R   ERAAIN P+QGSAAD+   AM  M 
Sbjct: 855  TKAQARATGYVETIFGRRAHYPEIRSSNPQLRAFNERAAINAPIQGSAADIIRRAMARMD 914

Query: 1053 EISKNARLKELGWKLLLQV 1071
               +NA L E+  ++LLQV
Sbjct: 915  AALENAGLGEV--QMLLQV 931



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 48/251 (19%), Positives = 102/251 (40%), Gaps = 56/251 (22%)

Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEG- 480
           ++ L+       DP++ K+  N  +D  ++   G+++     DTM ++ + D+   + G 
Sbjct: 445 KEALDAIRGLMADPAVLKIGQNLKYDWLLMYRLGVEIVNCD-DTMLISYVLDAGTGSHGT 503

Query: 481 -GYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKIS 539
            G+ ++AL+                       E ++G + +         K+   +G+  
Sbjct: 504 VGHGMDALS-----------------------ERWLGHVPIP-------YKELTGSGRNQ 533

Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
               + +++R       +Y+A D+  TL+L++ LK +L              + +   Y+
Sbjct: 534 ITFDMVDIERA-----TAYAAEDADITLRLWQVLKPRLA------------ARGLVSVYE 576

Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVG 659
              +P   ++ +ME  G+ VDR+ LS +         A  +   + A +         +G
Sbjct: 577 RLERPMIPVIGRMEHRGIEVDRQILSRLSGDFAQTAAAMEDEIYELAGER------FTIG 630

Query: 660 SDTQLRQLLFG 670
           S  QL  +LFG
Sbjct: 631 SPKQLGDILFG 641


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.316    0.131    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,333,026,782
Number of Sequences: 23463169
Number of extensions: 738547299
Number of successful extensions: 1953880
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5256
Number of HSP's successfully gapped in prelim test: 453
Number of HSP's that attempted gapping in prelim test: 1933589
Number of HSP's gapped (non-prelim): 12171
length of query: 1112
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 958
effective length of database: 8,745,867,341
effective search space: 8378540912678
effective search space used: 8378540912678
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 83 (36.6 bits)