BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001267
(1112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CDS1|DPO1_LACLA DNA polymerase I OS=Lactococcus lactis subsp. lactis (strain IL1403)
GN=polA PE=3 SV=1
Length = 877
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 157/293 (53%), Gaps = 31/293 (10%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
A D + L + + + I + I +Q + V G +G++H + T+TGRLS
Sbjct: 559 AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P ++ KIR+AF+ + L+ +DY Q+ELR+LAH++ + ++DAFK G
Sbjct: 619 SVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHG 678
Query: 899 GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
D H+ TAM ++ +E + D A++RR AK +NF + YG
Sbjct: 679 ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716
Query: 959 KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
+ GLAR+ ++ ++AK ++ ++ + T+ E +E+R V T+ R R+ P
Sbjct: 717 ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776
Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
I + + R ER AIN+P+QGSAAD+ AM+ + K ++ KLLLQV
Sbjct: 777 INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQV 829
>sp|P19821|DPO1_THEAQ DNA polymerase I, thermostable OS=Thermus aquaticus GN=polA PE=1 SV=1
Length = 832
Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 107/312 (34%), Positives = 162/312 (51%), Gaps = 33/312 (10%)
Query: 761 GCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGK 820
G TE+T + A A + REA + + + + L S +I PL + +
Sbjct: 504 GKTEKTGKRSTSA------AVLEALREAHPIVEKILQYRELTKLKSTYIDPLP-DLIHPR 556
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GR+H N T TGRLS+ PNLQN P +IR+AFIA G L+ DY Q+EL
Sbjct: 557 TGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIEL 616
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
R+LAHL+ ++++ F+ G D H+ TA M+ R AV+ PL+
Sbjct: 617 RVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVD----------------PLM-- 658
Query: 940 AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
RR AK +NF + YG + L+++ + EEA+ ++ ++ +V W E +E
Sbjct: 659 -----RRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 713
Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
R +V TL GR R P +++ +S R ER A N PVQG+AAD+ AM+++ R
Sbjct: 714 GRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PR 771
Query: 1060 LKELGWKLLLQV 1071
L+E+G ++LLQV
Sbjct: 772 LEEMGARMLLQV 783
>sp|O32801|DPO1_LACLM DNA polymerase I OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=polA PE=3 SV=2
Length = 877
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 157/293 (53%), Gaps = 31/293 (10%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
A D + L + + + I + I +Q + V G +G++H + T+TGRLS
Sbjct: 559 AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQDLTQTGRLS 618
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P ++ KIR+AF+ + L+ +DY Q+ELR+LAH++ + ++DAFK G
Sbjct: 619 SVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHG 678
Query: 899 GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
D H+ TAM ++ +E + D A++RR AK +NF + YG
Sbjct: 679 ADIHTSTAMRVF-----GIEKAE-----------------DVTANDRRNAKAVNFGVVYG 716
Query: 959 KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
+ GLAR+ ++ ++AK ++ ++ + T+ E +E+R V T+ R R+ P
Sbjct: 717 ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPD 776
Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
I + + R ER AIN+P+QGSAAD+ AM+ + K ++ KLLLQV
Sbjct: 777 INARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALTERQSKSKLLLQV 829
>sp|P30313|DPO1F_THETH DNA polymerase I, thermostable OS=Thermus thermophilus GN=polA PE=1
SV=1
Length = 831
Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 107/312 (34%), Positives = 159/312 (50%), Gaps = 33/312 (10%)
Query: 761 GCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGK 820
G TE+T + A A + REA + + + + L + +I PL + V K
Sbjct: 503 GKTEKTGKRSTSA------AVLEALREAHPIVDRILQYRELTKLKNTYIDPLP-ALVHPK 555
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLEL 879
GR+H N T TGRLS+ PNLQN P +IR+AF+A G L+V DY Q+EL
Sbjct: 556 TGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWVLVVLDYSQIEL 615
Query: 880 RILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKD 939
R+LAHL+ ++++ F+ G D H++TA M+ V+ PL+
Sbjct: 616 RVLAHLSGDENLIRVFQEGRDIHTQTASWMFGVSPEGVD----------------PLM-- 657
Query: 940 AFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKE 999
RR AK +NF + YG + L+ + + EEA ++ ++ +V W E +E
Sbjct: 658 -----RRAAKTINFGVLYGMSAHRLSGELSIPYEEAVAFIERYFQSYPKVRAWIEGTLEE 712
Query: 1000 SRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
R +V TL GR R P + + +S R ER A N PVQG+AAD+ AM+ + R
Sbjct: 713 GRRRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVRLFP--R 770
Query: 1060 LKELGWKLLLQV 1071
L+ELG ++LLQV
Sbjct: 771 LQELGARMLLQV 782
>sp|P52026|DPO1_GEOSE DNA polymerase I OS=Geobacillus stearothermophilus GN=polA PE=1 SV=2
Length = 876
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 146/253 (57%), Gaps = 25/253 (9%)
Query: 821 NGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLE 878
G+VH N T+TGRLS+ PNLQN P ++ KIRQAF+ + LI ADY Q+E
Sbjct: 599 TGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIE 658
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
LR+LAH+A ++++AF+ G D H++TAM+++ H+ +
Sbjct: 659 LRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIF-HVSE----------------------E 695
Query: 939 DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
D A+ RR+AK +NF I YG + GLA++ ++ +EA + ++ ++ V + + +
Sbjct: 696 DVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQ 755
Query: 999 ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
E++ +V TLL R R P I S + R+ ER A+NTP+QGSAAD+ AM+++S
Sbjct: 756 EAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLSVRL 815
Query: 1059 RLKELGWKLLLQV 1071
R + L +LLLQV
Sbjct: 816 REERLQARLLLQV 828
>sp|P52028|DPO1T_THET8 DNA polymerase I, thermostable OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=polA PE=3 SV=2
Length = 834
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 155/293 (52%), Gaps = 27/293 (9%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL S V + GR+H N T TGRLS
Sbjct: 519 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPRTGRLHTRFNQTATATGRLS 577
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 578 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637
Query: 899 GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
D H++TA M+ AV+ PL+ RR AK +NF + YG
Sbjct: 638 KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674
Query: 959 KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
+ L+++ + EEA ++ ++ +V W E +E R +V TL GR R P
Sbjct: 675 MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734
Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
+ + +S R ER A N PVQG+AAD+ AM+++ RL+E+G ++LLQV
Sbjct: 735 LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF--PRLREMGARMLLQV 785
>sp|P80194|DPO1_THECA DNA polymerase I, thermostable OS=Thermus caldophilus GN=polA PE=1
SV=2
Length = 834
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 154/293 (52%), Gaps = 27/293 (9%)
Query: 780 ATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTETGRLS 838
A + REA + + + + L + ++ PL S V GR+H N T TGRLS
Sbjct: 519 AVLEALREAHPIVEKILQHRELTKLKNTYVDPLP-SLVHPNTGRLHTRFNQTATATGRLS 577
Query: 839 ARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAG 898
+ PNLQN P +IR+AF+A G +L+ DY Q+ELR+LAHL+ ++++ F+ G
Sbjct: 578 SSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEG 637
Query: 899 GDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYG 958
D H++TA M+ AV+ PL+ RR AK +NF + YG
Sbjct: 638 KDIHTQTASWMFGVPPEAVD----------------PLM-------RRAAKTVNFGVLYG 674
Query: 959 KTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPA 1018
+ L+++ + EEA ++ ++ +V W E +E R +V TL GR R P
Sbjct: 675 MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734
Query: 1019 IKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
+ + +S R ER A N PVQG+AAD+ AM+++ RL+E+G ++LLQV
Sbjct: 735 LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP--RLREMGARMLLQV 785
>sp|Q9S1G2|DPO1_RHILE DNA polymerase I OS=Rhizobium leguminosarum GN=polA PE=3 SV=1
Length = 1016
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 135/254 (53%), Gaps = 30/254 (11%)
Query: 823 RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
RVH S ++ +T TGRLS+ PNLQN P + KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 736 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 795
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
LAH+A + AF+ G D H+ TA M+ G + GE
Sbjct: 796 LAHVAEIPQLTKAFEDGVDIHAMTASEMF---------GVPVEGMPGE------------ 834
Query: 942 ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
RR+AK +NF I YG + GLA + EA + ++ + + E+RK +R
Sbjct: 835 --VRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMAR 892
Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
+V T+ GR +P I+S S R ERAAIN P+QGSAADV AM++I L
Sbjct: 893 DKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPA--LV 950
Query: 1062 ELGW----KLLLQV 1071
E+G ++LLQV
Sbjct: 951 EVGLADRVRMLLQV 964
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 102/256 (39%), Gaps = 71/256 (27%)
Query: 422 RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGG 481
RD L ED S+ KV N +D +L+ YG++ F DTM ++ + D+ G
Sbjct: 482 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETRSFD-DTMLISYVLDAG---TGA 537
Query: 482 YSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMG--KISMKDIFGRRKLKKDGSAGKIS 539
+ ++ L+ E F+G I KD+ G +GK +
Sbjct: 538 HGMDPLS-----------------------EKFLGHTPIPYKDVAG---------SGKAN 565
Query: 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQ 599
+ ++ R Y+A D+ TL+L+ LK +L + Y+
Sbjct: 566 VTFDLVDIDRATH-----YAAEDADVTLRLWLVLKPRL------------AAAGLTSVYE 608
Query: 600 EYWQPFGEILVKMETEGMLVDREYLSEI-----EKVARAEQEAAVNRFRKWASKHCPDAK 654
+P +L +ME G+ VDR+ LS + + AR E E V ++
Sbjct: 609 RLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERF--------- 659
Query: 655 YMNVGSDTQLRQLLFG 670
N+GS QL +LFG
Sbjct: 660 --NIGSPKQLGDILFG 673
>sp|O52225|DPO1_THEFI DNA polymerase I, thermostable OS=Thermus filiformis GN=polA PE=1
SV=1
Length = 833
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 151/297 (50%), Gaps = 31/297 (10%)
Query: 780 ATEQEAREACDAISALCEVC----SIDSLISNFILPLQGSNVSGKNGRVHCSLN-INTET 834
+T Q A EA + E+ + L S ++ PL V + GR+H N T T
Sbjct: 513 STAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLP-RLVHPRTGRLHTRFNQTATAT 571
Query: 835 GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDA 894
GRLS+ PNLQN P +IR+AF+A G L+ ADY Q+ELR+LAHL+ +++
Sbjct: 572 GRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRV 631
Query: 895 FKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFS 954
F+ G D H+ TA M+ G D P L D RR AK +NF
Sbjct: 632 FREGKDIHTETAAWMF-----------------GLD----PALVDP--KMRRAAKTVNFG 668
Query: 955 IAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRAR 1014
+ YG + L+++ + +EA+ ++ ++ +V W E +E R +V TL GR R
Sbjct: 669 VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728
Query: 1015 RFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
P + S RS R ER A N PVQG+AAD+ AM+++ RLK LG LLLQV
Sbjct: 729 YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLF--PRLKPLGAHLLLQV 783
>sp|P59199|DPO1_STRPN DNA polymerase I OS=Streptococcus pneumoniae serotype 4 (strain ATCC
BAA-334 / TIGR4) GN=polA PE=3 SV=1
Length = 877
Score = 153 bits (386), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
A D + L + I I ++ I +Q + V G +G++H + T+TGRLS
Sbjct: 558 AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617
Query: 839 ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
+ PNLQN PA LE+ R IR+AF+ +S++++ DY Q+ELR+LAH++ + ++ AF+
Sbjct: 618 SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676
Query: 897 AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
G D H+ TAM ++ G ++P D A++RR AK +NF +
Sbjct: 677 EGADIHTSTAMRVF-----------------GIERP-----DDVTANDRRNAKAVNFGVV 714
Query: 957 YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
YG + GL+ + +S +EAK +D ++ + + + +E+R +V TL R R
Sbjct: 715 YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774
Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
P I S + R ER AIN+P+QGSAAD+ AM+++ K K+LLQV
Sbjct: 775 PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829
>sp|Q59156|DPO1_CALBD DNA polymerase I OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888
/ DSM 6725 / Z-1320) GN=polA PE=3 SV=2
Length = 850
Score = 153 bits (386), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 141/261 (54%), Gaps = 26/261 (9%)
Query: 812 LQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI 870
LQ N S GRVH + + T TGRL++ PNLQN P + IR+ F+ G+ LI
Sbjct: 567 LQAINPSS--GRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLI 624
Query: 871 VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
ADY Q+ELRILAH++ + ++ AFK D HS+TA ++ G D
Sbjct: 625 DADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVF-----------------GVD 667
Query: 931 KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
+ D R +AK +NF I YG + GLARD K+S +EA + ++ ++ +V
Sbjct: 668 ------IADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVK 721
Query: 991 TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
+ + K +R + V TL R R IKS R+ R + ER A+N+P+QGSAAD+ A
Sbjct: 722 EYLDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLA 781
Query: 1051 MLEISKNARLKELGWKLLLQV 1071
M+++ + + L K++LQV
Sbjct: 782 MIKVYQKLKENNLKSKIILQV 802
>sp|Q9HT80|DPO1_PSEAE DNA polymerase I OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1
/ 1C / PRS 101 / LMG 12228) GN=polA PE=3 SV=1
Length = 913
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 138/277 (49%), Gaps = 24/277 (8%)
Query: 816 NVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADY 874
++ + GR+H S + TGRLS+ PNLQN P + +IRQAF+A G L+ ADY
Sbjct: 632 QINPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADY 691
Query: 875 GQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPV 934
Q+ELRI+AHLA +LDAF+ D H TA ++ V
Sbjct: 692 SQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFG----------------------V 729
Query: 935 PLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQE 994
PL +D +RR AK +NF + YG + GLA+ V +EA+ +D ++ VL + E
Sbjct: 730 PL-EDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEAQAYIDRYFARYPGVLAYME 788
Query: 995 ARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEI 1054
+ ++ V TL GR P I S + R ER AIN P+QG+AAD+ AM+ +
Sbjct: 789 RTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAINAPMQGTAADIMKRAMVAV 848
Query: 1055 SKNARLKELGWKLLLQVLFFFSFSFFSIIVIVSCQGI 1091
+ L +++LQV +V C+GI
Sbjct: 849 DNWLQESGLDARVILQVHDELVLEVREDLVEQVCEGI 885
>sp|P43741|DPO1_HAEIN DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=polA PE=3 SV=1
Length = 930
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 132/244 (54%), Gaps = 24/244 (9%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GRVH S + T TGRLS+ PNLQN P ++ IRQAFIA G S++ ADY
Sbjct: 651 VNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRHIRQAFIAREGYSIVAADYS 710
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
Q+ELRI+AHL+ + +++AF G D H TA ++ G L E E
Sbjct: 711 QIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIF---------GVSLDEVTSE------ 755
Query: 936 LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
+RR AK +NF + YG + GL+R +S +A+K +DL++ V +
Sbjct: 756 --------QRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMDLYFQRYPSVQQFMTD 807
Query: 996 RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
+++++ +V TL GR P I S +R ER AIN P+QG+AAD+ AM+++
Sbjct: 808 IREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKLD 867
Query: 1056 KNAR 1059
+ R
Sbjct: 868 EVIR 871
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/383 (21%), Positives = 156/383 (40%), Gaps = 97/383 (25%)
Query: 299 SFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMV---VDNVSAAK 355
S ++ ++ K + + T Q++ A EN + K++I R+K + + + ++ ++AAK
Sbjct: 297 SITQTTEQPVKMNQYKATSQDQSAVEN--TPKIQIDRTKYETLLTQADLTRWIEKLNAAK 354
Query: 356 KVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVD 415
+ A DTE +D V I F++ +G A + +D
Sbjct: 355 LI-------------AVDTETDSLDYMSANLVG----ISFALENGEAAYL-----PLQLD 392
Query: 416 LLDGGG----RDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL 471
LD L P E+P+I K+ N FD + +G+++ G DTM ++
Sbjct: 393 YLDAPKTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYT 452
Query: 472 WDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKK 531
+S+ G ++++ L ++ + + A++ KG + F
Sbjct: 453 LNST----GRHNMDDLA--KRYLGHETIAFESLAGKGKSQLTF----------------- 489
Query: 532 DGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW-KLDGKPVP 590
P+E+ Y+A D+ T+KL ++L W KL +P
Sbjct: 490 --------NQIPLEQ--------ATEYAAEDADVTMKLQQAL--------WLKLQEEP-- 523
Query: 591 GKSMFDFYQEYWQPFGEILVKMETEGMLVDREYL----SEIEKVARAEQEAAVNRFRKWA 646
++ + Y+ P +L +ME G+L+D + L +EI A ++ A +A
Sbjct: 524 --TLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQA------YA 575
Query: 647 SKHCPDAKYMNVGSDTQLRQLLF 669
P N+ S QL+++LF
Sbjct: 576 LAGQP----FNLASTKQLQEILF 594
>sp|O34996|DPO1_BACSU DNA polymerase I OS=Bacillus subtilis (strain 168) GN=polA PE=3 SV=1
Length = 880
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 157/295 (53%), Gaps = 34/295 (11%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG-------KNGRVHCSLN-INTETGRL 837
+ D + L + I I + I LQ + + G + +VH N T+TGRL
Sbjct: 561 SADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRL 620
Query: 838 SARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELRILAHLANCKSMLDAFK 896
S+ PNLQN P ++ KIRQAF+ + LI ADY Q+ELR+LAH++ +++++AF
Sbjct: 621 SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680
Query: 897 AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
D H++TAM+++ ++ V + RR+AK +NF I
Sbjct: 681 NDMDIHTKTAMDVFHVAKDEVTSAM-----------------------RRQAKAVNFGIV 717
Query: 957 YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
YG + GL+++ ++ +EA +D + Q V + E +E++ +V TL+ R R
Sbjct: 718 YGISDYGLSQNLGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYI 777
Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
P + S + R+ ER A+NTP+QGSAAD+ AM++++ + K+L +LLLQV
Sbjct: 778 PELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQV 832
>sp|P0A550|DPO1_MYCTU DNA polymerase I OS=Mycobacterium tuberculosis GN=polA PE=3 SV=1
Length = 904
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 135/253 (53%), Gaps = 25/253 (9%)
Query: 821 NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
+GR+H + N TGRLS+ PNLQN P +IR AF+ G + L+ ADY Q+E
Sbjct: 626 DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIE 685
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
+RI+AHL+ + +++AF G D HS A + G + E GE
Sbjct: 686 MRIMAHLSGDEGLIEAFNTGEDLHSFVASRAF---------GVPIDEVTGE--------- 727
Query: 939 DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
RR+ K +++ +AYG + GL++ K+S EEA + +D ++ V + A +
Sbjct: 728 -----LRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFARFGGVRDYLRAVVE 782
Query: 999 ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
+R D + T+LGR R P + S R R ERAA+N P+QGSAAD+ AM+++ K
Sbjct: 783 RARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIQVDKAL 842
Query: 1059 RLKELGWKLLLQV 1071
+L ++LLQV
Sbjct: 843 NEAQLASRMLLQV 855
>sp|P0A551|DPO1_MYCBO DNA polymerase I OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=polA PE=3 SV=1
Length = 904
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 135/253 (53%), Gaps = 25/253 (9%)
Query: 821 NGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS-LIVADYGQLE 878
+GR+H + N TGRLS+ PNLQN P +IR AF+ G + L+ ADY Q+E
Sbjct: 626 DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIE 685
Query: 879 LRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLK 938
+RI+AHL+ + +++AF G D HS A + G + E GE
Sbjct: 686 MRIMAHLSGDEGLIEAFNTGEDLHSFVASRAF---------GVPIDEVTGE--------- 727
Query: 939 DAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKK 998
RR+ K +++ +AYG + GL++ K+S EEA + +D ++ V + A +
Sbjct: 728 -----LRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFARFGGVRDYLRAVVE 782
Query: 999 ESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNA 1058
+R D + T+LGR R P + S R R ERAA+N P+QGSAAD+ AM+++ K
Sbjct: 783 RARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIQVDKAL 842
Query: 1059 RLKELGWKLLLQV 1071
+L ++LLQV
Sbjct: 843 NEAQLASRMLLQV 855
>sp|P59200|DPO1_STRR6 DNA polymerase I OS=Streptococcus pneumoniae (strain ATCC BAA-255 /
R6) GN=polA PE=3 SV=1
Length = 877
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 158/295 (53%), Gaps = 34/295 (11%)
Query: 788 ACDAISALCEVCSIDSLISNF--ILPLQGSNVSG------KNGRVHCS-LNINTETGRLS 838
A D + L + I I ++ I +Q + V G +G++H + T+TGRLS
Sbjct: 558 AVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLS 617
Query: 839 ARRPNLQNQPA-LEKDRYKIRQAFIAVPGNSLIVA-DYGQLELRILAHLANCKSMLDAFK 896
+ PNLQN PA LE+ R IR+AF+ +S++++ DY Q+ELR+LAH++ + ++ AF+
Sbjct: 618 SVDPNLQNIPARLEQGRL-IRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676
Query: 897 AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIA 956
G D H+ TAM ++ G ++P + A++RR AK +NF +
Sbjct: 677 EGADIHTSTAMRVF-----------------GIERP-----DNVTANDRRNAKAVNFGVV 714
Query: 957 YGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRF 1016
YG + GL+ + +S +EAK +D ++ + + + +E+R +V TL R R
Sbjct: 715 YGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRREL 774
Query: 1017 PAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
P I S + R ER AIN+P+QGSAAD+ AM+++ K K+LLQV
Sbjct: 775 PDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 829
>sp|Q04957|DPO1_BACCA DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1
Length = 877
Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 147/253 (58%), Gaps = 29/253 (11%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLI-VADYGQLELR 880
+VH N T+TGRLS+ PNLQN P ++ KIRQAF+ + LI ADY Q+ELR
Sbjct: 602 KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 661
Query: 881 ILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
+LAH+A ++++AF+ D H++TAM+++ QV ED +
Sbjct: 662 VLAHIAEDDNLMEAFRRDLDIHTKTAMDIF----------QV-----SED--------EV 698
Query: 941 FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
+ RR+AK +NF I YG + GLA++ +S +EA + ++ ++ V + E +E+
Sbjct: 699 TPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEA 758
Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
+ +V TLL R R P I S + R+ ER A+NTP+QGSAAD+ AM+++ NARL
Sbjct: 759 KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL--NARL 816
Query: 1061 KE--LGWKLLLQV 1071
KE L +LLLQV
Sbjct: 817 KEERLQARLLLQV 829
>sp|P52027|DPO1_DEIRA DNA polymerase I OS=Deinococcus radiodurans (strain ATCC 13939 / DSM
20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 /
R1 / VKM B-1422) GN=polA PE=3 SV=2
Length = 956
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 146/287 (50%), Gaps = 27/287 (9%)
Query: 786 REACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL-NINTETGRLSARRPNL 844
R+A I + E +D L ++ P+ + V+ GR+H + TGRLS+ PNL
Sbjct: 648 RDAHPIIPLVLEFRELDKLRGTYLDPIP-NLVNPHTGRLHTTFAQTAVATGRLSSLNPNL 706
Query: 845 QNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSR 904
QN P + +IR+ FIA G +LI ADY Q+ELR+LAH+A+ M AF G D H R
Sbjct: 707 QNIPIRSELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRR 766
Query: 905 TAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGL 964
TA QVL G D+ V A++RR AK +NF + YG + L
Sbjct: 767 TA-------------AQVL----GLDEATVD------ANQRRAAKTVNFGVLYGMSAHRL 803
Query: 965 ARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTR 1024
+ D + EA +++++ + + R +V TL GR R P + S R
Sbjct: 804 SNDLGIPYAEAATFIEIYFATYPGIRRYINHTLDFGRTHGYVETLYGRRRYVPGLSSRNR 863
Query: 1025 SQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
QR ER A N P+QG+AAD+ AM+++ + +L +G ++LLQV
Sbjct: 864 VQREAEERLAYNMPIQGTAADIMKLAMVQL--DPQLDAIGARMLLQV 908
>sp|P46835|DPO1_MYCLE DNA polymerase I OS=Mycobacterium leprae (strain TN) GN=polA PE=3
SV=1
Length = 911
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 136/261 (52%), Gaps = 28/261 (10%)
Query: 816 NVSGKNGRVHCSLNIN-TETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS----LI 870
N +GR+H + N TGRLS+ PNLQN P +IR AF+ N+ L+
Sbjct: 625 NAVAADGRIHTTFNQTIATTGRLSSTEPNLQNIPIRTNAGRQIRDAFVVGSENNGYTELM 684
Query: 871 VADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGED 930
ADY Q+E+RI+AHL+ + +++AF G D HS A +
Sbjct: 685 TADYSQIEMRIMAHLSRDEGLIEAFHTGEDLHSFVASRAFG------------------- 725
Query: 931 KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVL 990
+P+ +D RR+ K +++ +AYG + GLA K+S EEAK ++ ++ V
Sbjct: 726 ---IPI-EDITPELRRRVKAMSYGLAYGLSAYGLATQLKISTEEAKLQMEQYFARFGGVR 781
Query: 991 TWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCA 1050
+ +++R D + T+LGR R P + S R R ERAA+N P+QGSAAD+ A
Sbjct: 782 DYLMDVVEQARKDGYTSTVLGRRRYLPELDSSNRQIREAAERAALNAPIQGSAADIIKVA 841
Query: 1051 MLEISKNARLKELGWKLLLQV 1071
M+ + K+ + +L ++LLQV
Sbjct: 842 MIAVDKSLKQAKLASRMLLQV 862
>sp|Q9F173|DPO1_SALTY DNA polymerase I OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=polA PE=3 SV=2
Length = 928
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 148/264 (56%), Gaps = 29/264 (10%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA P +
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIA-PEDY 699
Query: 869 LIV-ADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWH 927
LIV ADY Q+ELRI+AHL+ K +L AF G D H TA ++ ++V TG+
Sbjct: 700 LIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSV-TGE------ 752
Query: 928 GEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
+RR AK +NF + YG + GL+R + +EA+K +DL++
Sbjct: 753 ----------------QRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYP 796
Query: 988 EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
VL + E + +++ +V TL GR P IKS ++R ERAAIN P+QG+AAD+
Sbjct: 797 GVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPMQGTAADII 856
Query: 1048 MCAMLEISKNARLKELGWKLLLQV 1071
AM+ + + ++ ++++QV
Sbjct: 857 KRAMIAVDAWLQAEQPRVRMIMQV 880
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 340 SFYSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYS 399
S+ + V ++D+V+ W+ K K V A DTE +D V + F+I
Sbjct: 326 SYENYVTILDDVTLES---WIEKLK-KAPVFAFDTETDSLDNIAANLVG----LSFAIEP 377
Query: 400 GPEADFGNGKSCIWVDLLDGGGRD-LLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKV 458
G A ++D D R L P ED ++KV N +D VL+NYG+++
Sbjct: 378 GVAAYVPVAHD--YLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIEL 435
Query: 459 SGFHADTM 466
G DTM
Sbjct: 436 RGIAFDTM 443
>sp|P00582|DPO1_ECOLI DNA polymerase I OS=Escherichia coli (strain K12) GN=polA PE=1 SV=1
Length = 928
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 144/263 (54%), Gaps = 27/263 (10%)
Query: 810 LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LPL ++ K GRVH S + T TGRLS+ PNLQN P ++ +IRQAFIA
Sbjct: 644 LPLM---INPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYV 700
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
++ ADY Q+ELRI+AHL+ K +L AF G D H TA ++
Sbjct: 701 IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFG----------------- 743
Query: 929 EDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQE 988
+PL + + +RR AK +NF + YG + GLAR + +EA+K +DL++
Sbjct: 744 -----LPL-ETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPG 797
Query: 989 VLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAM 1048
VL + E + +++ +V TL GR P IKS ++R ERAAIN P+QG+AAD+
Sbjct: 798 VLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIK 857
Query: 1049 CAMLEISKNARLKELGWKLLLQV 1071
AM+ + + ++ ++++QV
Sbjct: 858 RAMIAVDAWLQAEQPRVRMIMQV 880
Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 425 LNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDS 474
L P ED KV N +D +L NYG+++ G DTM + + +S
Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNS 451
>sp|P74933|DPO1_TREPA DNA polymerase I OS=Treponema pallidum (strain Nichols) GN=polA PE=3
SV=2
Length = 997
Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 136/258 (52%), Gaps = 24/258 (9%)
Query: 815 SNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVAD 873
+ ++ + GRVH S + I T TGRLS+R PNLQN P + KIRQAF A G+ LI AD
Sbjct: 715 AKLADQTGRVHTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISAD 774
Query: 874 YGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPP 933
Y Q+EL +LAHL+ +++L+AF+ D H+ TA +I N
Sbjct: 775 YTQIELVVLAHLSQDRNLLNAFRQHIDIHALTA----AYIFNVS---------------- 814
Query: 934 VPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQ 993
+ D + RR AK +NF I YG + L+ + K+S +EA+ + ++ V +
Sbjct: 815 ---IDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYFETYPGVYAFS 871
Query: 994 EARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLE 1053
+++R +V +L GR R I S +R ER A+NT +Q SAAD+ AM+
Sbjct: 872 TQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIVKIAMIA 931
Query: 1054 ISKNARLKELGWKLLLQV 1071
I + + L +LLLQV
Sbjct: 932 IQRAFARRPLRAQLLLQV 949
>sp|Q1RH76|DPO1_RICBR DNA polymerase I OS=Rickettsia bellii (strain RML369-C) GN=polA PE=3
SV=1
Length = 871
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 138/264 (52%), Gaps = 31/264 (11%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q N++ R+H + + T GRLS++ PNLQN P + KIRQAF+A G
Sbjct: 589 LPKQIDNITR---RIHTTFLQTSTTTGRLSSQEPNLQNVPIRSGEGNKIRQAFVAEQGYK 645
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
LI ADY Q+ELRIL+H+A+ K++ AF D H++TA ++
Sbjct: 646 LISADYSQIELRILSHIADIKALKQAFINKDDIHTQTACQIF------------------ 687
Query: 929 EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
L K+ SE RRKAK +NF I YG + GLA+ VS EA + + ++ E +
Sbjct: 688 ------NLQKEELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNTEAAEYIKKYFAEYK 741
Query: 988 EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
V + EA K ++ + +V GR P I + + ERAAIN P+QG+ AD+
Sbjct: 742 GVQEYMEATKSFAQANGYVTDFFGRKCFVPLIND--KRLKQFAERAAINAPIQGTNADII 799
Query: 1048 MCAMLEISKNARLKELGWKLLLQV 1071
AM + + ++L +L+LQ+
Sbjct: 800 KIAMTLLDREIEKRKLKTRLVLQI 823
>sp|Q9RAA9|DPO1_RICFE DNA polymerase I OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=polA PE=3 SV=1
Length = 922
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 133/264 (50%), Gaps = 31/264 (11%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q N++ RVH + + T GRLS++ PNLQN P + KIRQAFIA G
Sbjct: 640 LPKQIDNITH---RVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEGYK 696
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
LI ADY Q+ELRIL+H+AN ++ AF D H++TA ++
Sbjct: 697 LISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIF------------------ 738
Query: 929 EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
L K SE RRKAK +NF I YG + GLA+ VS EA + + ++ E +
Sbjct: 739 ------NLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNGEASEYIKKYFAEYK 792
Query: 988 EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
V + E K + + +V GR P I + + ERAAIN P+QG+ AD+
Sbjct: 793 GVQEYMEQTKAFASSNGYVINFFGRKCFVPLIHD--KKLKQFAERAAINAPIQGTNADII 850
Query: 1048 MCAMLEISKNARLKELGWKLLLQV 1071
AM+ + + L +L+LQ+
Sbjct: 851 KIAMINLDQEIEKNNLKTRLVLQI 874
>sp|Q9RLB6|DPO1_RICHE DNA polymerase I OS=Rickettsia helvetica GN=polA PE=3 SV=1
Length = 921
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 135/264 (51%), Gaps = 31/264 (11%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q N++ RVH + + T GRLS++ PNLQN P + KIRQAFIA G
Sbjct: 639 LPKQIDNITH---RVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEGYK 695
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
LI ADY Q+ELRIL+H+AN ++ AF D H++TA ++
Sbjct: 696 LISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIF------------------ 737
Query: 929 EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
L K +E RRKAK +NF I YG + GLA+ V+ EA + + ++ E +
Sbjct: 738 ------NLQKHELTNEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYK 791
Query: 988 EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
V + E K + + +V GR P I + + ERAAIN P+QG+ AD+
Sbjct: 792 GVQEYMEQTKAFASSNGYVTNFFGRKCFVPLIHD--KKLKQFAERAAINAPIQGTNADII 849
Query: 1048 MCAMLEISKNARLKELGWKLLLQV 1071
AM+ + + ++L +L+LQ+
Sbjct: 850 KIAMINLDQEIEKRKLKTRLVLQI 873
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 103/245 (42%), Gaps = 46/245 (18%)
Query: 431 FFEDPSIKKVWHNYSFDNHVLENYGLK-VSGFHADTMHMARLWDSSRRTEGGYSLEALTG 489
D SIKK+ Y LK + F+A+ H + + Y+L A
Sbjct: 380 LLADKSIKKI------------TYSLKPLLKFYANQSHEITAIEDLELMQ--YALSAGLS 425
Query: 490 DRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQR 549
+ + E K + +SK E F G + + + +++D S G S + P+E ++
Sbjct: 426 QKNLFEEALKEDNRPLSKLAYREEFKGD-TERSTAAYKSVREDASTGSTSKL-PLE-VEF 482
Query: 550 EERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEIL 609
+R + I+ SA N + LYK + +LE+ D K F Y + P IL
Sbjct: 483 GKRPIVINESARIVANFISLYK---QNILELK---DNKA------FRLYSDIDLPICFIL 530
Query: 610 VKMETEGMLVDREYLSEIE-----KVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQL 664
KME G+ VD YL ++ ++ + E+E F +K N+GS QL
Sbjct: 531 DKMEKVGIKVDANYLKQLSTEFGAEILKLEEEI----FALSGTK-------FNIGSLKQL 579
Query: 665 RQLLF 669
++LF
Sbjct: 580 GEILF 584
>sp|Q9RLA0|DPO1_RICTY DNA polymerase I OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=polA PE=3 SV=1
Length = 872
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 136/264 (51%), Gaps = 31/264 (11%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q +N++ R+H + + T GRLS++ PNLQN P D KIRQAFIA G
Sbjct: 590 LPKQINNITK---RIHTTFLQTSTTTGRLSSQEPNLQNIPTRSSDGNKIRQAFIAEDGYK 646
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
LI ADY Q+ELRIL+H+AN + AF D H++TA ++
Sbjct: 647 LISADYSQIELRILSHIANVDVLKQAFINKEDIHTQTACQIF------------------ 688
Query: 929 EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
L K SE RRKAK +NF I YG + GLA+ VS A + + ++ E +
Sbjct: 689 ------NLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNGTAAEYIKQYFAEYK 742
Query: 988 EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
+ + K + + +V GR P I + + ERAAIN P+QG++AD+
Sbjct: 743 GMQEYMVQTKAYANRNGYVTNFFGRKCFIPLIHD--KKLKQFAERAAINAPIQGTSADII 800
Query: 1048 MCAMLEISKNARLKELGWKLLLQV 1071
AM+++++ ++L +L+LQ+
Sbjct: 801 KIAMIKLAQEIEKRKLKTRLILQI 824
>sp|O05949|DPO1_RICPR DNA polymerase I OS=Rickettsia prowazekii (strain Madrid E) GN=polA
PE=3 SV=1
Length = 867
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 134/264 (50%), Gaps = 31/264 (11%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q +N++ R+H + + T GRLS++ PNLQN P D KIR+AFIA G
Sbjct: 585 LPKQINNITK---RIHTTFLQTSTTTGRLSSQEPNLQNVPIRSSDGNKIREAFIAEEGYK 641
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
LI ADY Q+ELRIL+H+AN + AF D H++TA ++
Sbjct: 642 LISADYSQIELRILSHIANIDVLKQAFINKEDIHTQTACQIF------------------ 683
Query: 929 EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
L K SE RRKAK +NF I YG + GLA+ VS A + + ++ E +
Sbjct: 684 ------NLKKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNSTASEYIKQYFAEYK 737
Query: 988 EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
V + K + + +V GR P I + + ERAAIN P+QG+ AD+
Sbjct: 738 GVQEYMTQTKACASRNGYVTNFFGRKCFIPLIHD--KKLKQFAERAAINAPIQGTNADII 795
Query: 1048 MCAMLEISKNARLKELGWKLLLQV 1071
AM+++ K ++L +L+LQ+
Sbjct: 796 KIAMIKLDKEIEERKLKTRLILQI 819
>sp|Q92GB7|DPO1_RICCN DNA polymerase I OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=polA PE=3 SV=1
Length = 875
Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 134/264 (50%), Gaps = 31/264 (11%)
Query: 810 LPLQGSNVSGKNGRVHCSLNINTET-GRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNS 868
LP Q N++ RVH + + T GRLS++ PNLQN P + +IR+AFIA G
Sbjct: 593 LPKQIDNITH---RVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNQIRKAFIAEEGYK 649
Query: 869 LIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHG 928
LI ADY Q+ELRIL+H+AN ++ AF D H++TA ++
Sbjct: 650 LISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIF------------------ 691
Query: 929 EDKPPVPLLKDAFASE-RRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQ 987
L K SE RRKAK +NF I YG + GLA+ V+ EA + + ++ E +
Sbjct: 692 ------NLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYK 745
Query: 988 EVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVA 1047
V + E K + + +V GR P I + + ERAAIN P+QG+ D+
Sbjct: 746 GVQEYMEQTKAFASSNGYVTNCFGRKCFVPLIHD--KKLKQFAERAAINAPIQGTNTDII 803
Query: 1048 MCAMLEISKNARLKELGWKLLLQV 1071
AM+ + + ++L +L+LQ+
Sbjct: 804 KIAMINLDQEIEKRKLKTRLVLQI 827
>sp|O51498|DPO1_BORBU DNA polymerase I OS=Borrelia burgdorferi (strain ATCC 35210 / B31 /
CIP 102532 / DSM 4680) GN=polA PE=3 SV=1
Length = 908
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 151/296 (51%), Gaps = 28/296 (9%)
Query: 777 KIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETG 835
K+ + +E E+ + + ++ + S ++ ++ L ++ K R+H S + T TG
Sbjct: 592 KVLESLREQHESIENLIKYRQIAKLKSTYTDNLIEL----INYKTNRLHTSFIQTKTATG 647
Query: 836 RLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAF 895
R+++ PNLQN P ++ KIR+AF GN I ADY Q+EL ILAHL+ + ++ AF
Sbjct: 648 RITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAF 707
Query: 896 KAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSI 955
+ D H+ TA ++ E+K P L RR AK +NF I
Sbjct: 708 ENNKDIHTETASKLF----------------KIEEKEITPNL-------RRIAKSINFGI 744
Query: 956 AYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARR 1015
Y + LA++ ++ EEAK ++ +++ ++ + + R + T+L R R
Sbjct: 745 IYRMSDFRLAKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRY 804
Query: 1016 FPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
I S +R+ ER AIN+ +QGSAAD+ AM+++ + K++ K+LLQV
Sbjct: 805 IKEINSNNYLERSAAERIAINSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQV 860
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 63/247 (25%)
Query: 424 LLNEFAPFFE-DPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
++ +F FE +P I + NY FD +L+N G + DTM A L D++ + +
Sbjct: 389 IIQKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPPYFDTMIAAYLIDTNSKVSLDF 446
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
E + + ED ++K+ + IS
Sbjct: 447 LAEKYLMHKNIKYEDV------------------------------IQKNDNFANISL-- 474
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
E+ SYS+ D+ T +L+ KKL E E
Sbjct: 475 ----------EMATSYSSEDADITFRLFNIFTKKLKEDKLDKL------------MHEIE 512
Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
PF +++++ME G+ +D+EYL E K E EA N K N+ S
Sbjct: 513 MPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIKSIGID------FNLNSPK 566
Query: 663 QLRQLLF 669
Q+ ++LF
Sbjct: 567 QMHEILF 573
>sp|O08307|DPO1_CHLAA DNA polymerase I OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM
635 / J-10-fl) GN=polA PE=3 SV=1
Length = 942
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 136/256 (53%), Gaps = 25/256 (9%)
Query: 817 VSGKNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYG 875
V+ + GR+H S N + TGRLS+ PNLQN P ++ +IR+AF+A PG + ADY
Sbjct: 657 VNPRTGRIHTSYNQLGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAEPGWRFVAADYS 716
Query: 876 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVP 935
Q+ELR+LAH++ ++++ AF+ G D H+ TA ++ AV+ Q
Sbjct: 717 QIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQ-------------- 762
Query: 936 LLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEA 995
RR AK + F + YG + GLA+ + + A++ +D + + + + +
Sbjct: 763 ---------RRVAKTVVFGVIYGISAFGLAQRLGIERDLARQLIDNLFAQFPGIRRYIDQ 813
Query: 996 RKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055
+ R +V TL GR RR + ++R ER AIN P+QG+AAD+ AM+ +
Sbjct: 814 TLEFGRQHGYVQTLFGR-RRVMEDLRASGARRAAAEREAINAPIQGTAADLMKMAMVNVH 872
Query: 1056 KNARLKELGWKLLLQV 1071
+ R + L +LLLQV
Sbjct: 873 RALREQGLRTRLLLQV 888
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 107/248 (43%), Gaps = 56/248 (22%)
Query: 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGY 482
+++ APFF +P K HN FD VL G+KVSG DTM A
Sbjct: 406 EVVTALAPFFANPQQPKFAHNAKFDMEVLAGAGIKVSGLAFDTMIAA------------- 452
Query: 483 SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIA 542
A+ G R+ + +D Y+ + + T +++D+ GR K S ++
Sbjct: 453 ---AMLGKRQGL-KDLAFYELKLPEPPT--------TIEDLIGRG--NKQISFAEV---- 494
Query: 543 PVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYW 602
PVE+ Y+A D++ TL+L + L++ +L+ +P ++ D Y
Sbjct: 495 PVEQ--------AAPYAAADALYTLRLTERLQR-------QLEAEP----ALHDLYYRVE 535
Query: 603 QPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDT 662
P E+L ME G+ +D+EYL E+ + V R + A N+ S
Sbjct: 536 LPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGP------FNINSGQ 589
Query: 663 QLRQLLFG 670
QL +LFG
Sbjct: 590 QLNDVLFG 597
>sp|Q55971|DPO1_SYNY3 DNA polymerase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=polA PE=3 SV=1
Length = 986
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 139/301 (46%), Gaps = 51/301 (16%)
Query: 792 ISALCEVCSIDSLISNFI--LPLQGSNVSGKNGRVHCSLN-INTETGRLSARRPNLQNQP 848
I A+ E ++ L S ++ LP V+G+ R+H N T TGRLS+ PNLQN P
Sbjct: 668 IDAILEHRTLAKLKSTYVDALP---ELVNGQTQRIHTDFNQAVTSTGRLSSSNPNLQNIP 724
Query: 849 ALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
+IR+AF+ L+ ADY Q+ELRILAHL+ +L A+ D H TA
Sbjct: 725 IRSDFSRQIRRAFLPQKDWLLVSADYSQIELRILAHLSQEPVLLQAYGDRQDVHGVTAK- 783
Query: 909 MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDW 968
L + ED P +ER K +NF + YG AR+
Sbjct: 784 ---------------LLFGKEDITP---------AERNLGKTINFGVIYGMGAQRFARET 819
Query: 969 KVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRN 1028
+S E ++ +D ++ +V + E K E+ +V T++GR R F + R R
Sbjct: 820 GISAVEGREFIDRYHRTYAQVFDYLETMKLEAIAKGYVTTIVGRRRYFNFVTEALRQLRG 879
Query: 1029 ------------------HIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQ 1070
+ R+A N P+QGS+AD+ AM++++K L+ ++LLQ
Sbjct: 880 KTVTELDLVDVKMNYNDAQLLRSAANAPIQGSSADIIKIAMVKLAK--LLESYQTRMLLQ 937
Query: 1071 V 1071
V
Sbjct: 938 V 938
>sp|P56105|DPO1_HELPY DNA polymerase I OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=polA PE=3 SV=2
Length = 891
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 134/284 (47%), Gaps = 34/284 (11%)
Query: 791 AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
+I+ + E ++ L + + PL + K+ ++H + + T TGRLS+ PNLQN P
Sbjct: 589 SIALILEYRELNKLFNTYTTPLL--RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPV 646
Query: 850 LEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
IR+ FIA L+ DY Q+ELR+LAH + K +++AF G D H T+
Sbjct: 647 RSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKA 706
Query: 909 MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK-AKMLNFSIAYGKTPVGLARD 967
++ G+ L A E+R AK +NF + YG L+
Sbjct: 707 LF---------GEYL------------------AKEKRSIAKSINFGLVYGMGSKKLSET 739
Query: 968 WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
+S+ EAK ++ ++ + + K+E + TLLGR R F + +
Sbjct: 740 LNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYVKG 799
Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
N++ R +N QGSA+D+ ML++S+ + +LLLQV
Sbjct: 800 NYL-REGVNAIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQV 841
>sp|Q9ZJE9|DPO1_HELPJ DNA polymerase I OS=Helicobacter pylori (strain J99) GN=polA PE=3
SV=1
Length = 897
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 131/284 (46%), Gaps = 34/284 (11%)
Query: 791 AISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCS-LNINTETGRLSARRPNLQNQPA 849
+I + E ++ L + + PL + K+ ++H + + T TGRLS+ PNLQN P
Sbjct: 595 SIPLILEYRELNKLFNTYTTPLL--RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPV 652
Query: 850 LEKDRYKIRQAFIAVPGN-SLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMN 908
IR+ FIA L+ DY Q+ELR+LAH + K +++AF G D H T+
Sbjct: 653 RSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKA 712
Query: 909 MYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK-AKMLNFSIAYGKTPVGLARD 967
++ GED A E+R AK +NF + YG L+
Sbjct: 713 LF-----------------GED----------LAKEKRSIAKSINFGLVYGMGSKKLSET 745
Query: 968 WKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQR 1027
+ + EAK ++ ++ + + ++E + TLLGR R F +
Sbjct: 746 LSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVFDFTGVNDYVKG 805
Query: 1028 NHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQV 1071
N++ R +N QGSA+D+ ML++S+ + +LLLQV
Sbjct: 806 NYL-REGVNAIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQV 847
>sp|P30314|DPOL_BPSP1 DNA polymerase OS=Bacillus phage SP01 GN=31 PE=3 SV=2
Length = 924
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 138/291 (47%), Gaps = 41/291 (14%)
Query: 790 DAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNIN-TETGRLSARRPNLQ--- 845
D + L E + L +NF+ L S + + VH S NI+ T TGRLS+ PN Q
Sbjct: 545 DFVKVLMEFRKANHLYNNFVSKL--SLMIDPDNIVHPSYNIHGTVTGRLSSNEPNAQQFP 602
Query: 846 ---NQPALEKDRYKIRQAFIAVPGNSLIVA--DYGQLELRILAHLANCKSMLDAFKAGGD 900
N P L + ++I++ F + G+ ++ DY QLELRIL + +D +++G D
Sbjct: 603 RKVNTPTLFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGAD 662
Query: 901 FHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKT 960
H A + + V +E +D +R +K + F I Y ++
Sbjct: 663 LHKAVASDAF----------GVAIEEVSKD-------------QRTASKKIQFGIVYQES 699
Query: 961 PVGLARDWK-----VSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARR 1015
GL+ D + +S +E + + ++ +V W KK + + V TL G R
Sbjct: 700 ARGLSEDLRAEGITMSEDECEIFIKKYFKRFPKVSKWIRDTKKHVKDISTVKTLTGATRN 759
Query: 1016 FPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWK 1066
P I S+ +S+ N ER A+NTP+QG+ +D + +++ I N L+E G +
Sbjct: 760 LPDIDSIDQSKANEAERQAVNTPIQGTGSDCTLMSLILI--NQWLRESGLR 808
>sp|O67779|DPO1_AQUAE DNA polymerase I OS=Aquifex aeolicus (strain VF5) GN=polA PE=3 SV=1
Length = 574
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 142/309 (45%), Gaps = 58/309 (18%)
Query: 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSL 828
KG V++++K + Q+ + + + E+ + + L+ KNGRV+
Sbjct: 262 KGNVSTDDKALTSYQD----VEPVKLVLEIRKLKKIADK----LKELKEHLKNGRVYPEF 313
Query: 829 -NINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLAN 887
I TGR+S+ PN+QN + +D +R F A GN+ +++D+ Q+ELRI A
Sbjct: 314 KQIGAVTGRMSSAHPNIQN---IHRD---MRGIFKAEEGNTFVISDFSQIELRIAAEYVK 367
Query: 888 CKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRK 947
MLDAFK G D H TA +V G+ ++ ER+
Sbjct: 368 DPLMLDAFKKGKDMHRYTA---------SVVLGKK--------------EEEITKEERQL 404
Query: 948 AKMLNFSIAYGKTPVGLARDWK------VSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
AK +NF + YG + GLA K +S+EEA+ + ++ + W + KKE +
Sbjct: 405 AKAINFGLIYGISAKGLAEYAKLGYGVEISLEEAQVLRERFFKNFKAFKEWHDRVKKELK 464
Query: 1002 IDNHV--HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNAR 1059
V HTLLG RRF A + A+N P+QG+ AD+ A+L N +
Sbjct: 465 EKGEVKGHTLLG--RRFSA----------NTFNDAVNYPIQGTGADLLKLAVLLFDANLQ 512
Query: 1060 LKELGWKLL 1068
K + KL+
Sbjct: 513 KKGIDAKLV 521
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 91/200 (45%), Gaps = 23/200 (11%)
Query: 857 IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNA 916
+R AF+ PG S++ ADY QLELRILAHL++ + ++ G D A
Sbjct: 2314 MRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA---------- 2363
Query: 917 VETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAK 976
E + E G+D R++AK + + I YG L + +A
Sbjct: 2364 AEWKMIEPESVGDDL-------------RQQAKQICYGIIYGMGAKSLGEQMGIKENDAA 2410
Query: 977 KTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAIN 1036
+D + + + + K + D V T+LGR R P IK ++ H ER AIN
Sbjct: 2411 CYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAIN 2470
Query: 1037 TPVQGSAADVAMCAMLEISK 1056
T VQGSAAD+ A + I K
Sbjct: 2471 TIVQGSAADIVKIATVNIQK 2490
>sp|Q7TQ07|DPOLN_MOUSE DNA polymerase nu OS=Mus musculus GN=Poln PE=2 SV=2
Length = 864
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 117/255 (45%), Gaps = 43/255 (16%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQ-------------NQPALEKDRYKI--RQAFIA 863
K G + + N T TGRLSA+ PN+Q N E++ I R F++
Sbjct: 553 KKGSISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVS 612
Query: 864 VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD---FHSRTAMNMYPHIRNAVETG 920
G++ + AD+ Q+ELRILAHL+ +L F+ F + T+
Sbjct: 613 SEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTS-------------- 658
Query: 921 QVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVD 980
+W +D P ++ +R + K + +S+ YG LA V+V EA ++
Sbjct: 659 ----QW--KDIP----IERVTHMDREQTKKVVYSVVYGAGKERLAACLGVTVLEATHFLE 708
Query: 981 LWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQ 1040
+ + +++ + + + +V ++LGR R P I + + R ER A+N VQ
Sbjct: 709 RFLQKYKKIKDFAQTVIGQCHSAGYVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQ 768
Query: 1041 GSAADVAMCAMLEIS 1055
GSAAD+ AM+ IS
Sbjct: 769 GSAADLCKLAMIRIS 783
>sp|Q7Z5Q5|DPOLN_HUMAN DNA polymerase nu OS=Homo sapiens GN=POLN PE=1 SV=2
Length = 900
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 115/257 (44%), Gaps = 49/257 (19%)
Query: 820 KNGRVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKI------------------RQA 860
K G + + N T TGRLSA+ PN+Q + K +I R
Sbjct: 554 KKGSISSTWNQTGTVTGRLSAKHPNIQ---GISKHPIQITTPKNFKGKEDKILTISPRAM 610
Query: 861 FIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGD---FHSRTAMNMYPHIRNAV 917
F++ G++ + AD+ Q+ELRIL HL+ +L F+ F + T+
Sbjct: 611 FVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTS----------- 659
Query: 918 ETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKK 977
+W +D P ++ ++R + K + +++ YG LA V ++EA +
Sbjct: 660 -------QW--KDVP----VEQVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQ 706
Query: 978 TVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINT 1037
++ + + +++ + A + V +++GR R P I + + R ER A+N
Sbjct: 707 FLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNF 766
Query: 1038 PVQGSAADVAMCAMLEI 1054
VQGSAAD+ AM+ +
Sbjct: 767 VVQGSAADLCKLAMIHV 783
>sp|O64235|DPOL_BPMD2 DNA polymerase OS=Mycobacterium phage D29 GN=44 PE=3 SV=1
Length = 607
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 111/251 (44%), Gaps = 46/251 (18%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
R H +N + T R+S Q PA + + +R+ F+A PG+ + DY ELR+
Sbjct: 347 RCHTFVNPLQARTSRMSITGIPAQTLPASD---WTVRRCFLADPGHVMASIDYQAQELRV 403
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMY-PHIRNAVETGQVLLEWHGEDKPPVPLLKDA 940
LA L+ ++M+ AFK G D H TA + HI +D P
Sbjct: 404 LAALSGDRTMIQAFKDGADLHLMTARAAFGDHIT--------------KDDP-------- 441
Query: 941 FASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKES 1000
ER+ AK +NF YG +A +S+E AK+ VD + V + E+
Sbjct: 442 ---ERKYAKTVNFGRVYGGGANTVAEQTGISIETAKQVVDGFDKAYPGVTRYSRKLANEA 498
Query: 1001 RIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060
+ + ++ +G RR P +S T S A+N +Q ++ DV A++ RL
Sbjct: 499 KRNGYIINPMG--RRLPVDRSRTYS--------ALNYQIQSTSRDVTCKALI------RL 542
Query: 1061 KELGWKLLLQV 1071
E G+ L++
Sbjct: 543 HEAGFTPYLRL 553
>sp|Q05254|DPOL_BPML5 DNA polymerase OS=Mycobacterium phage L5 GN=44 PE=3 SV=1
Length = 595
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 52/250 (20%)
Query: 823 RVHCSLN-INTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRI 881
R H +N + T R+S Q P+ + + +R+ FIA PG+ + DY ELR+
Sbjct: 343 RCHTFINPLQARTSRMSITGIPAQTLPSSD---WIVRRCFIAEPGDVMASVDYQAQELRV 399
Query: 882 LAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAF 941
LA L+ ++M++AF+ G D H TA D VP
Sbjct: 400 LAALSGDRNMIEAFENGADLHQMTA-----------------------DAAQVP------ 430
Query: 942 ASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESR 1001
R+ K NF YG LA +S+ AK+ + + V + E+
Sbjct: 431 ---RKVGKTANFQKVYGGGAKALAEAVGISIPVAKRVHEAFSATYPGVERLSKKLAMEAG 487
Query: 1002 IDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLK 1061
+ ++ +G RR P S T S A+N +Q S+ DV A++ RL
Sbjct: 488 RNGYIVNAMG--RRLPVDSSRTYS--------ALNYMIQSSSRDVTCRALI------RLH 531
Query: 1062 ELGWKLLLQV 1071
E G+ L++
Sbjct: 532 EAGYTPYLRL 541
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 92/218 (42%), Gaps = 52/218 (23%)
Query: 431 FFEDPSI------KKVWHNYSFDNHVLEN-YGLKVSGFHA---DTMHMARLWDSSRRTEG 480
F ED I + V N SFD VL+ +G+++ G DT +A+L D G
Sbjct: 78 FIEDVRIAIGALKRMVLQNASFDLQVLDQCFGIEMEGLWPRVLDTQILAKLVDPRPFEAG 137
Query: 481 GY--SLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKI 538
G+ SLE L K +SED+ K + M K++ + K A
Sbjct: 138 GFGHSLEELIA--KFISEDQAENVKKL---------MAKLAAE--------HKTTKAKIW 178
Query: 539 STIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFY 598
STI +L E ++ Y+ D+I T ++ KSL + ++S L VP
Sbjct: 179 STI----DLFHPE---YLLYAGMDTIFTARVCKSLTPLVPDVSRSL----VP-------- 219
Query: 599 QEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQE 636
Y EI ++ +G L+D EY + + A+QE
Sbjct: 220 --YEHKISEICSYIDRQGFLLDVEYSRSLAEKWLADQE 255
>sp|P19822|DPOL_BPT5 DNA polymerase OS=Enterobacteria phage T5 PE=3 SV=2
Length = 825
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 114/271 (42%), Gaps = 37/271 (13%)
Query: 832 TETGRLSAR-RPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKS 890
T +GRLS+ + NLQ P +D I+ +A PG +I D E+ A L+ ++
Sbjct: 458 TTSGRLSSSGKLNLQQLP---RDESIIKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRN 514
Query: 891 MLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKM 950
M F + R + YP + + L+ D +K F + R+ AK
Sbjct: 515 MQQVF-----INMRNEPDKYPDFHSNIAHMVFKLQCEPRD------VKKLFPALRQAAKA 563
Query: 951 LNFSIAYGKTPVGLARDW----------------KVSVEEAKKTVDLWYNERQEVLTWQE 994
+ F I YG P +A + +V +AK+ ++ ++ + ++ W +
Sbjct: 564 ITFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWID 623
Query: 995 ARKKESRIDNH--VHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAML 1052
K +I NH +++ GR RR I S R + R+ N +Q +++D +
Sbjct: 624 --KCHDQIKNHGFIYSHFGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGA- 680
Query: 1053 EISKNARLKELGWKLLLQVLFFFSFSFFSII 1083
+ + + LG + ++++ S +I+
Sbjct: 681 -VDADNEIISLGLEQEMKIVMLVHDSVVAIV 710
>sp|P06225|DPOL_BPSP2 DNA polymerase OS=Bacillus phage SP02 GN=L PE=3 SV=1
Length = 648
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 12/131 (9%)
Query: 857 IRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNA 916
+R AFI GN V+D+ +E R++A LA + L+ F G + +A M+ +
Sbjct: 370 VRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRLEVFNTHGKIYEASAAQMFKVPVES 429
Query: 917 VETGQVLLEWHGEDKPPVPLLKDAFASERR---KAKMLNFSIAYGKTPVGLARDWKVSVE 973
+ G L K V L + + + LN +A G+ P L + W+ +
Sbjct: 430 ITKGSPL-----RQKGKVAELALGYQGGKGALIQMGALNMGLAEGELP-ELVKAWRTA-- 481
Query: 974 EAKKTVDLWYN 984
KK V WY+
Sbjct: 482 -NKKIVKFWYD 491
>sp|Q8VZD5|KSG5_ARATH Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana
GN=ASK5 PE=2 SV=1
Length = 410
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 360 MLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDG 419
+L N + H V CD AK+ VK E + + IC Y PE FG + +D+
Sbjct: 205 LLVNPHTHQVKLCDFGSAKVLVKGEPNISY---ICSRYYRAPELIFGATEYTTTIDIWSA 261
Query: 420 G 420
G
Sbjct: 262 G 262
>sp|Q40518|MSK1_TOBAC Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1
PE=2 SV=1
Length = 409
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 360 MLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDG 419
+L N + H V CD AK+ VK E + + IC Y PE FG + +D+
Sbjct: 204 LLVNPHTHQVKLCDFGSAKVLVKGEPNISY---ICSRYYRAPELIFGATEYTTAIDIWSA 260
Query: 420 G 420
G
Sbjct: 261 G 261
>sp|P43289|KSG3_ARATH Shaggy-related protein kinase gamma OS=Arabidopsis thaliana GN=ASK3
PE=2 SV=1
Length = 409
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 360 MLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDG 419
+L N + H V CD AK+ VK E + + IC Y PE FG + +D+
Sbjct: 204 LLVNPHTHQVKLCDFGSAKVLVKGEPNISY---ICSRYYRAPELIFGATEYTTAIDVWSA 260
Query: 420 G 420
G
Sbjct: 261 G 261
>sp|Q39019|KSG10_ARATH Shaggy-related protein kinase kappa OS=Arabidopsis thaliana
GN=ASK10 PE=2 SV=2
Length = 421
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 360 MLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDG 419
+L N + H + CD AK+ VK E V + IC Y PE FG + +D+
Sbjct: 214 LLVNPHTHQLKICDFGSAKVLVKGEPNVSY---ICSRYYRAPELIFGASEYTTAIDIWST 270
Query: 420 G 420
G
Sbjct: 271 G 271
>sp|P43288|KSG1_ARATH Shaggy-related protein kinase alpha OS=Arabidopsis thaliana GN=ASK1
PE=2 SV=3
Length = 405
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 360 MLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDG 419
+L N + H V CD AK+ VK E + + IC Y PE FG + +D+
Sbjct: 200 LLVNPHTHQVKLCDFGSAKVLVKGEPNISY---ICSRYYRAPELIFGATEYTTAIDVWSA 256
Query: 420 G 420
G
Sbjct: 257 G 257
>sp|Q754R5|UBP4_ASHGO Ubiquitin carboxyl-terminal hydrolase 4 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=DOA4 PE=3 SV=2
Length = 852
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 30/132 (22%)
Query: 564 INTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI-------LVKME--- 613
++TL Y+ KK+ +S KPVP K ++D Y+ + F + + K+E
Sbjct: 43 VDTLSNYQDECKKIKSVS-----KPVPSKELYDLYETAYVYFKIVSLIVLNKIPKLEEYA 97
Query: 614 -TEGMLVDRE-------YLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSD---- 661
+ VDR Y + ++ + ++ A + RF K S+ P+AK +G +
Sbjct: 98 RAKSDAVDRTGKQLLEIYNMLVNRLVKDDRIAEIKRFVKENSRRDPEAKNEQIGVESGKS 157
Query: 662 ---TQLRQLLFG 670
T LR LL G
Sbjct: 158 IPATLLRNLLMG 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,822,927
Number of Sequences: 539616
Number of extensions: 17843559
Number of successful extensions: 47963
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 47787
Number of HSP's gapped (non-prelim): 122
length of query: 1112
length of database: 191,569,459
effective HSP length: 128
effective length of query: 984
effective length of database: 122,498,611
effective search space: 120538633224
effective search space used: 120538633224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)