Query 001267
Match_columns 1112
No_of_seqs 367 out of 2118
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 19:24:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kfn_A Klenow fragment of DNA 100.0 8E-118 3E-122 1075.2 54.2 582 342-1111 4-595 (605)
2 3pv8_A DNA polymerase I; DNA p 100.0 4E-117 1E-121 1062.2 51.5 550 369-1111 31-582 (592)
3 4dfk_A DNA polymerase I, therm 100.0 1E-112 4E-117 1013.6 43.5 515 368-1111 11-529 (540)
4 1bgx_T TAQ DNA polymerase; DNA 100.0 8E-106 3E-110 995.0 35.5 556 290-1111 260-821 (832)
5 1x9m_A DNA polymerase; DNA plo 100.0 7E-102 2E-106 949.2 38.9 567 369-1111 1-688 (698)
6 3ikm_A DNA polymerase subunit 100.0 3.7E-44 1.3E-48 437.0 3.8 231 820-1083 769-1078(1172)
7 1yt3_A Ribonuclease D, RNAse D 99.8 3.9E-19 1.3E-23 203.4 20.4 208 344-629 2-219 (375)
8 3saf_A Exosome component 10; e 99.8 5E-18 1.7E-22 197.2 22.9 173 343-581 108-281 (428)
9 2e6m_A Werner syndrome ATP-dep 99.7 1.7E-17 5.8E-22 174.3 14.2 182 337-580 9-198 (208)
10 2hbj_A Exosome complex exonucl 99.7 1.1E-16 3.7E-21 185.5 17.8 171 344-580 86-257 (410)
11 3cym_A Uncharacterized protein 99.5 5.5E-14 1.9E-18 164.2 15.1 171 344-580 17-190 (440)
12 1vk0_A Hypothetical protein; h 99.4 7.2E-13 2.5E-17 140.3 10.9 169 346-575 22-205 (206)
13 3v9w_A Ribonuclease T; DEDD nu 98.9 3.1E-09 1.1E-13 113.5 11.7 165 347-580 20-224 (235)
14 2p1j_A POLIII, DNA polymerase 98.4 6.6E-07 2.3E-11 92.4 8.9 110 368-490 13-147 (186)
15 3mxm_B Three prime repair exon 98.3 2.3E-07 7.7E-12 100.2 4.3 120 368-490 13-185 (242)
16 2gui_A DNA polymerase III epsi 98.3 6E-06 2.1E-10 85.4 14.0 111 368-490 10-154 (194)
17 1y97_A Three prime repair exon 98.2 1E-06 3.5E-11 94.0 7.0 65 423-490 98-180 (238)
18 2f96_A Ribonuclease T; RNAse, 98.1 9.5E-06 3.3E-10 86.0 11.8 112 368-490 30-182 (224)
19 3u3y_B Three prime repair exon 98.0 6.1E-06 2.1E-10 92.5 6.1 120 368-490 13-185 (314)
20 1w0h_A 3'-5' exonuclease ERI1; 97.8 4.9E-06 1.7E-10 86.5 2.6 116 368-490 11-165 (204)
21 3tr8_A Oligoribonuclease; tran 97.8 2.5E-05 8.6E-10 81.3 6.6 103 368-475 10-150 (186)
22 1wlj_A Interferon stimulated g 97.8 5.6E-05 1.9E-09 78.2 8.8 63 421-490 70-136 (189)
23 2qxf_A Exodeoxyribonuclease I; 97.7 0.00011 3.7E-09 86.9 11.0 118 368-490 10-172 (482)
24 2igi_A Oligoribonuclease; RNAs 97.5 0.00017 6E-09 73.5 7.8 102 368-474 6-145 (180)
25 1zbh_A 3'-5' exonuclease ERI1; 97.4 0.00021 7.3E-09 79.3 7.7 115 368-490 79-233 (299)
26 2xri_A ERI1 exoribonuclease 3; 97.1 0.00037 1.3E-08 74.0 5.5 110 368-490 32-184 (224)
27 2gbz_A Oligoribonuclease; ORN, 97.0 0.0011 3.6E-08 68.9 7.3 81 368-453 10-121 (194)
28 1zbu_A ERI-1 homolog, 3'-5' ex 96.9 0.00052 1.8E-08 78.0 4.1 116 368-490 129-283 (349)
29 3cg7_A CRN-4, cell death-relat 96.8 0.00037 1.3E-08 77.8 2.4 68 421-490 95-179 (308)
30 4gmj_B CCR4-NOT transcription 94.1 1.5 5E-05 48.6 17.5 53 433-490 147-215 (285)
31 1noy_A Protein (DNA polymerase 92.7 1.4 4.9E-05 50.3 15.4 107 422-573 192-335 (388)
32 1qht_A Protein (DNA polymerase 92.7 0.92 3.1E-05 56.7 14.6 154 368-575 136-328 (775)
33 3qex_A DNA polymerase, GP43; d 91.2 2.3 7.8E-05 53.9 15.7 106 423-573 196-338 (903)
34 1s5j_A DNA polymerase I; repli 87.2 11 0.00039 47.4 17.9 36 421-457 257-297 (847)
35 2d5r_A CCR4-NOT transcription 86.8 19 0.00063 39.1 17.0 53 433-490 137-205 (252)
36 2p51_A SPCC18.06C protein; DED 83.5 33 0.0011 38.6 17.4 53 433-490 158-226 (333)
37 3k59_A POL II, DNA polymerase 79.1 23 0.00078 44.4 15.6 65 422-490 205-302 (786)
38 3spa_A Mtrpol, DNA-directed RN 78.5 20 0.0007 46.1 15.0 133 868-1012 821-980 (1134)
39 3iay_A DNA polymerase delta ca 77.3 21 0.00073 45.4 14.9 110 422-573 314-465 (919)
40 1msw_D DNA-directed RNA polyme 69.4 44 0.0015 42.3 14.8 122 868-1001 532-707 (883)
41 2py5_A DNA polymerase; protein 53.7 13 0.00044 44.8 5.8 66 368-453 7-72 (575)
42 2gv9_A DNA polymerase; polymer 43.3 56 0.0019 42.8 9.6 23 553-575 530-552 (1193)
43 4hec_A Putative uncharacterize 28.6 65 0.0022 33.4 5.5 32 422-453 89-123 (190)
44 3ikm_A DNA polymerase subunit 28.2 1.4E+02 0.0049 38.5 9.3 28 552-579 322-349 (1172)
No 1
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=100.00 E-value=7.7e-118 Score=1075.25 Aligned_cols=582 Identities=27% Similarity=0.368 Sum_probs=511.0
Q ss_pred CCCeEEecCHHHHHHHHHHHhccCCCcEEEEEeccCCCCcccCccccccceEEEEeeeCCCcccCCCceEEEEeCCC---
Q 001267 342 YSNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD--- 418 (1112)
Q Consensus 342 ~~~y~lV~t~e~L~~lv~~L~~a~~~~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~--- 418 (1112)
|.+|.+|++.+++.++++.|... ++|+|||||||++++.+++++ +++++.. +..+|++...
T Consensus 4 ~~~y~~I~~~~~l~~~~~~l~~~---~~va~DtEttgl~~~~~~iv~----I~~~~~~---------g~~~yip~~~~~~ 67 (605)
T 2kfn_A 4 YDNYVTILDEETLKAWIAKLEKA---PVFAFDTETDSLDNISANLVG----LSFAIEP---------GVAAYIPVAHDYL 67 (605)
T ss_dssp SSSSEECCSHHHHHHHHHHHHTS---SSEEEEEEESCSCTTTCCEEE----EEEEEET---------TEEEEEECCCCST
T ss_pred hhheEEecCHHHHHHHHHhcccC---CeEEEEEecCCCCcccCceEE----EEEEEcC---------CcEEEEecccccc
Confidence 56789999999999999988765 579999999999998888876 4454322 2245664322
Q ss_pred -----CChhhhHhhhhhhhcCCCceEEEeccHHHHHHHHHcCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHHhcccc
Q 001267 419 -----GGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKV 493 (1112)
Q Consensus 419 -----~~~~~vL~~Lk~~Led~~v~KV~HNaKfDl~vL~r~GI~l~~~vfDTmIAAyLLdp~~~~~~s~sLd~La~~~~~ 493 (1112)
.+..++++.|+++|+++.+.||+||++||+.+|.++|+.+.+++||||+|+||++|+.. +|+|++|+.+
T Consensus 68 ~~~~~l~~~~vl~~L~~~L~d~~i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~laayLL~p~~~---~~~L~~La~~--- 141 (605)
T 2kfn_A 68 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAG---RHDMDSLAER--- 141 (605)
T ss_dssp TCCCCCCHHHHHHHHHHHHTCTTSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCTTSS---CCSHHHHHHH---
T ss_pred ccccccCHHHHHHHHHHHHcCCCCeEEEECcHHHHHHHHHCCCCCCCccccHHHHHHHhCCCCC---CCCHHHHHHH---
Confidence 11345678899999999999999999999999999999998889999999999999764 6999999987
Q ss_pred ccccchhhcccccCCCCcccccccchhhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001267 494 MSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSL 573 (1112)
Q Consensus 494 ~~~~~Lg~~~~l~~~~~~eel~GK~s~k~lfgK~k~kkq~s~~~~w~~~pL~~~~~~~~e~~l~YAA~DA~~tlrL~e~L 573 (1112)
||++. . ..+++++||++. + .+|..+|+ +.+..||+.||.++++||+.|
T Consensus 142 ----~Lg~~-----~---------i~~~~~~gKg~~--~----~~~~~~~l--------e~~~~yAa~Da~~~~~L~~~L 189 (605)
T 2kfn_A 142 ----WLKHK-----T---------ITFEEIAGKGKN--Q----LTFNQIAL--------EEAGRYAAEDADVTLQLHLKM 189 (605)
T ss_dssp ----HSCCC-----C---------CCHHHHHCSSTT--C----CCGGGSCH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hcCCC-----c---------ccHHHHhCCCcc--c----CCcccCCH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 44432 1 123445665431 1 14654553 457899999999999999999
Q ss_pred HHHHhh-cccccCCCCCCCchHHHHHHHHhcchHHHHHHhhhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 001267 574 KKKLLE-MSWKLDGKPVPGKSMFDFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPD 652 (1112)
Q Consensus 574 ~~kLee-~~~~~~~~~~~~~~l~~Ly~~IEmPL~~VLa~ME~~GI~VD~e~L~~L~~~l~~e~e~leeei~~~~~~~~~~ 652 (1112)
.++|++ . ++++||.++|||+++||++||.+||.||.+.|+++..++..+++.++++++++ +
T Consensus 190 ~~~L~~~~------------~l~~L~~~iE~Pl~~vLa~ME~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~------~ 251 (605)
T 2kfn_A 190 WPDLQKHK------------GPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEI------A 251 (605)
T ss_dssp HHHTTSCH------------HHHHHHHHTHHHHHHHHHHHHHHCBCBCHHHHHHHHHHHHHHHHHHHHHHHHH------S
T ss_pred HHHHHHHh------------hHHHHHHHHHhHHHHHHHHHHHcCeEeCHHHHHHHHHHHHHHHHHHHHHHHHH------h
Confidence 999975 3 68999999999999999999999999999999999999999999999999776 4
Q ss_pred CccccCCCHHHHHHHhhCCCCCCCCCCCCCCcccccccCCCccccccCCCCCcccccchhcccccCCCCccccccCCCcC
Q 001267 653 AKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSV 732 (1112)
Q Consensus 653 g~~fNi~S~kQL~~lLFe~~~~~k~~~l~Lp~er~~k~~~~~~~~~~~kk~~~~~~~~~l~~~G~~lp~~~~TktG~~St 732 (1112)
|+.||++||+||+++||+ ++|||+ .++||||+|||
T Consensus 252 g~~fN~~Spkql~~~Lf~--------~lglp~-------------------------------------~kktk~g~~st 286 (605)
T 2kfn_A 252 GEEFNLSSTKQLQTILFE--------KQGIKP-------------------------------------LKKTPGGAPST 286 (605)
T ss_dssp SSCCCSCTTTTSHHHHTT--------TSSCSC-------------------------------------CCCCC----TT
T ss_pred CCCCCCCCHHHHHHHHHH--------hcCCCC-------------------------------------CCcCCCCCccc
Confidence 788999999999999998 688863 24688999999
Q ss_pred cHHHHHHHHhccCccccccCCCCCCCCCCCcccccccccccccchhhhhHHHHHHHhHHHHHHHHHHhHhhhhhhhhccc
Q 001267 733 GGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPL 812 (1112)
Q Consensus 733 d~~vLe~La~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lle~r~l~Kl~styv~~l 812 (1112)
+++||++|+..||+ ++.||+||+++|++|||+++|
T Consensus 287 ~~~vL~~l~~~~p~---------------------------------------------~~~il~~r~l~Kl~sty~~~l 321 (605)
T 2kfn_A 287 SEEVLEELALDYPL---------------------------------------------PKVILEYRGLAKLKSTYTDKL 321 (605)
T ss_dssp TCCHHHHHTTTCSH---------------------------------------------HHHHHHHHHHHHHHHHTTTTG
T ss_pred cHHHHHHHHhcChH---------------------------------------------HHHHHHHHHHHHHhccHHHHH
Confidence 99999999976663 467999999999999999999
Q ss_pred ccCCccCCCCceeecccc-cCcccccccCCCCcccCCCCccchhhhcceEEcCCCCeEEEecccchhHHHHHHhcCchHH
Q 001267 813 QGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM 891 (1112)
Q Consensus 813 ~~~~v~~~dGRIH~s~n~-~T~TGRlSss~PNLQNIP~~~~~g~~iR~~Fia~~G~~lvsaDySQIELRIlAhlS~D~~L 891 (1112)
+. .+.+.||||||+||| +|+||||||++|||||||++++.|+.||+||+|++||+||+|||||||||||||||+|+.|
T Consensus 322 ~~-~v~~~~grih~~~~~~~t~TGRlss~~PnlQniP~r~~~g~~iR~~f~~~~g~~lv~aDysqiElRilA~ls~d~~l 400 (605)
T 2kfn_A 322 PL-MINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL 400 (605)
T ss_dssp GG-GBCTTTSSBCCEEESSCCSSSCCEEESSCGGGSCSSSHHHHHHHHTBBCCTTEEEEEEEETTHHHHHHHHHTTCHHH
T ss_pred HH-hhCcccCeecceeEecccccCceecCCCCcccCCCCccchHhHhheeeCCCCCEEEEechhhhHHHHHHHHcCCHHH
Confidence 97 455445999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchhHHHhhhccccccccccchhhhcccCCCCCCCCcccccChHHHHhhHHHhhhhhhCCCcccchhhhCCC
Q 001267 892 LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVS 971 (1112)
Q Consensus 892 i~af~~G~DiH~~tA~~ifg~~~e~v~~~~~~~~w~~~~~p~v~~~~~vt~~~R~~AK~vnfGiiYG~g~~~La~~lgis 971 (1112)
+++|++|.|||+.||+.+||++.+ +|++++|+.||++|||++||||+++||+++|||
T Consensus 401 ~~af~~g~Dih~~tA~~~f~~~~e-----------------------~vt~~~R~~aK~~~fg~~YG~~~~~la~~l~i~ 457 (605)
T 2kfn_A 401 LTAFAEGKDIHRATAAEVFGLPLE-----------------------TVTSEQRRSAKAINFGLIYGMSAFGLARQLNIP 457 (605)
T ss_dssp HHHHHTTCCHHHHHHHHHTTCCGG-----------------------GCCHHHHHHHHHHHHHHHTTCCTTHHHHHHTCC
T ss_pred HHHHhcCCCHHHHHHHHHhCCChh-----------------------hcCHHHHhhhhhhhccccccCCHHHHHHHcCCC
Confidence 999999999999999999998654 457899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHHHhCCeEecccCCcccCCCCCccChhhhhhhhhhhHhhhhhhHHHHHHHHHH
Q 001267 972 VEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAM 1051 (1112)
Q Consensus 972 ~~EAk~~id~ff~~yP~Vk~~~~~~~~~A~~~GyV~Tl~GRrr~lp~~~s~n~~~r~~~eR~avN~~IQGSAADI~K~AM 1051 (1112)
.+||++++++||++||+|++|++.+.++|+++|||+|++||||++|++++.|...|+.++|+|+|+|||||||||+|.||
T Consensus 458 ~~ea~~~i~~~~~~~p~v~~~~~~~~~~a~~~g~v~tl~GRrr~~p~~~s~~~~~r~~~~r~a~N~~iQgsaaDi~k~am 537 (605)
T 2kfn_A 458 RKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAM 537 (605)
T ss_dssp TTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEEECTTCCEEECTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCccHHHHHHHHHHHHHHcCcEECCCCCeEECCcccCCCchhhhhhhhhHhhHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCceEEeEccceeeeeecchhcHHHHHHHHHHHhcCCCCCCcccccccC
Q 001267 1052 LEISKNARLKELGWKLLLQVLFFFSFSFFSIIVIVSCQGIVLANAMHPMFGKSSRLHYDV 1111 (1112)
Q Consensus 1052 i~i~~~~~l~~~~~~llLqVHDElv~Ev~~~~~ae~~~~~v~~~Me~a~~~~~~~l~~d~ 1111 (1112)
+++++.+...+++++|++||||||+||||++. ++.+.++|+++|+++ ....+||.||+
T Consensus 538 ~~~~~~l~~~~~~~~~~l~vHDEl~~ev~~~~-~~~~~~~v~~~M~~~-~~l~vpl~v~~ 595 (605)
T 2kfn_A 538 IAVDAWLQAEQPRVRMIMQVHDELVFEVHKDD-VDAVAKQIHQLMENC-TRLDVPLLVEV 595 (605)
T ss_dssp HHHHHHHHHHCCSEEEEEEETTEEEEEEETTT-HHHHHHHHHHHHHHS-SCSSSCCCEEE
T ss_pred HHHHHHHHhcCCCceeeEEeccEEEEEcCHHH-HHHHHHHHHHHHhcc-CCCCCeEEEec
Confidence 99999655456789999999999999999985 889999999999999 67899999885
No 2
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=100.00 E-value=3.6e-117 Score=1062.22 Aligned_cols=550 Identities=27% Similarity=0.326 Sum_probs=493.3
Q ss_pred EEEEEeccCCCCcccCccccccceEEEEeeeCCCcccCCCceEEEEeCCCCChhhhHhhhhhhhcCCCceEEEeccHHHH
Q 001267 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDN 448 (1112)
Q Consensus 369 ~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~~~~~~vL~~Lk~~Led~~v~KV~HNaKfDl 448 (1112)
..++|||+++++++.++++| ++| +.++ ..+||+..+ ..+++.|+++|+|+.+.||+||+|||+
T Consensus 31 ~~aldtE~~~~~~~~a~Lvg----isl--a~~~--------~a~yIp~~~---~~~l~~Lk~lLed~~i~KV~hn~K~Dl 93 (592)
T 3pv8_A 31 KAALVVEVVEENYHDAPIVG----IAV--VNEH--------GRFFLRPET---ALADPQFVAWLGDETKKKSMFDSKRAA 93 (592)
T ss_dssp EEEEEEECCSSSCTTCCCCE----EEE--EETT--------EEEEECHHH---HTTCHHHHHHHTCTTSEEEESSHHHHH
T ss_pred CcEEEEEEcCCccCcccEEE----EEE--EcCC--------ceEEEccch---hhHHHHHHHHHhCCCCeEEEechHHHH
Confidence 57999999999999999876 444 3322 357886531 235678999999999999999999999
Q ss_pred HHHHHcCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhcccccCCCCcccccccchhhhhhcccc
Q 001267 449 HVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRK 528 (1112)
Q Consensus 449 ~vL~r~GI~l~~~vfDTmIAAyLLdp~~~~~~s~sLd~La~~~~~~~~~~Lg~~~~l~~~~~~eel~GK~s~k~lfgK~k 528 (1112)
++|.++|+.+++++||||||||||+|+.. +|+|++|+.+ ||++. . .++++++|+++
T Consensus 94 ~vL~~~Gi~l~g~~fDTmLAAYLL~p~~~---~~~L~~La~~-------yLg~~-----l---------~~~ee~~gkg~ 149 (592)
T 3pv8_A 94 VALKWKGIELCGVSFDLLLAAYLLDPAQG---VDDVAAAAKM-------KQYEA-----V---------RPDEAVYGKGA 149 (592)
T ss_dssp HHHHHTTCCCCCEEEEHHHHHHHHCGGGC---CCSHHHHHGG-------GTCCS-----S---------CCHHHHHCSGG
T ss_pred HHHHHcCCCCCCccchHHHHHHHcCCCCC---CCCHHHHHHH-------HcCCC-----C---------chHHHhcCccc
Confidence 99999999998999999999999999764 6999999997 56553 1 12345566543
Q ss_pred cccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHhcchHHH
Q 001267 529 LKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKLDGKPVPGKSMFDFYQEYWQPFGEI 608 (1112)
Q Consensus 529 ~kkq~s~~~~w~~~pL~~~~~~~~e~~l~YAA~DA~~tlrL~e~L~~kLee~~~~~~~~~~~~~~l~~Ly~~IEmPL~~V 608 (1112)
. +. .|. .+.+..|||.||+++++||+.|.++|++ .+++++|.++|||+++|
T Consensus 150 ~--~~--------~~~-------~e~~~~YAa~DA~~l~~L~~~L~~~L~e------------~~l~~l~~~~E~pl~~v 200 (592)
T 3pv8_A 150 K--RA--------VPD-------EPVLAEHLVRKAAAIWELERPFLDELRR------------NEQDRLLVELEQPLSSI 200 (592)
T ss_dssp G--CC--------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------TTCHHHHHHTHHHHHHH
T ss_pred c--cc--------Ccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc------------chhhhHHHHHHhHHHHH
Confidence 1 11 121 2567899999999999999999999987 47899999999999999
Q ss_pred HHHhhhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccCCCHHHHHHHhhCCCCCCCCCCCCCCccccc
Q 001267 609 LVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIERIF 688 (1112)
Q Consensus 609 La~ME~~GI~VD~e~L~~L~~~l~~e~e~leeei~~~~~~~~~~g~~fNi~S~kQL~~lLFe~~~~~k~~~l~Lp~er~~ 688 (1112)
|++||.+||.||.++|+++..++..+++.+++++++.+ |+.||++||+||+++||+ ++|||+
T Consensus 201 l~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~------g~~fN~~Spkql~~~Lf~--------~lgl~~---- 262 (592)
T 3pv8_A 201 LAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELA------GQEFNINSPKQLGVILFE--------KLQLPV---- 262 (592)
T ss_dssp HHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHH------TSCCCTTCHHHHHHHHHT--------TSCCCC----
T ss_pred HHHHhcCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCCCCCHHHHHHHHHH--------HcCCCC----
Confidence 99999999999999999999999999999999998764 678999999999999998 788863
Q ss_pred ccCCCccccccCCCCCcccccchhcccccCCCCccccccCCCcCcHHHHHHHHhccCccccccCCCCCCCCCCCcccccc
Q 001267 689 KVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEETEY 768 (1112)
Q Consensus 689 k~~~~~~~~~~~kk~~~~~~~~~l~~~G~~lp~~~~TktG~~Std~~vLe~La~~~~~~~~~~~~~~~l~~~~~~~~~~~ 768 (1112)
.++|||| |||+++||+.|+..||+
T Consensus 263 ---------------------------------~kktktg-~st~~~vL~~l~~~~p~---------------------- 286 (592)
T 3pv8_A 263 ---------------------------------LKKTKTG-YSTSADVLEKLAPYHEI---------------------- 286 (592)
T ss_dssp ---------------------------------CCEETTE-ECCCHHHHHHTTTTCTH----------------------
T ss_pred ---------------------------------CCCCCCC-CCchHHHHHHHHhhcch----------------------
Confidence 2468899 89999999999987763
Q ss_pred cccccccchhhhhHHHHHHHhHHHHHHHHHHhHhhhhhhhhcccccCCccCCCCceeecccc-cCcccccccCCCCcccC
Q 001267 769 KGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPNLQNQ 847 (1112)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~i~~Lle~r~l~Kl~styv~~l~~~~v~~~dGRIH~s~n~-~T~TGRlSss~PNLQNI 847 (1112)
++.||+||++.|++|||+++|+. .+++.||||||+||| +|+||||||++||||||
T Consensus 287 -----------------------~~~ile~R~l~kl~sty~~~l~~-~v~~~~gRih~~~~q~~t~TGRlss~~PNlQni 342 (592)
T 3pv8_A 287 -----------------------VENILHYRQLGKLQSTYIEGLLK-VVRPATKKVHTIFNQALTQTGRLSSTEPNLQNI 342 (592)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTHHHHH-HSBTTTTEECCEEESSCCSSSCCEEESSCCSSC
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHH-hhccCCCEECceeeeCCceeeCcccccCCcccc
Confidence 46799999999999999999987 455558999999998 99999999999999999
Q ss_pred CCCccchhhhcceEEc-CCCCeEEEecccchhHHHHHHhcCchHHHHHHHcCCCchhHHHhhhccccccccccchhhhcc
Q 001267 848 PALEKDRYKIRQAFIA-VPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEW 926 (1112)
Q Consensus 848 P~~~~~g~~iR~~Fia-~~G~~lvsaDySQIELRIlAhlS~D~~Li~af~~G~DiH~~tA~~ifg~~~e~v~~~~~~~~w 926 (1112)
|++++.|+.||+||+| ++||+||++||||||||||||||+|+.|+++|++|.|||+.||+.+||++.+
T Consensus 343 P~~~~~g~~iR~~Fv~~~~g~~lv~aDySqiElRilAhls~D~~l~~af~~g~Dih~~tA~~~fg~~~~----------- 411 (592)
T 3pv8_A 343 PIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED----------- 411 (592)
T ss_dssp CCSSHHHHGGGGGEECSSTTEEEEEEEETTHHHHHHHHHHTCHHHHHHHHTTCCHHHHHHHHHHSCCTT-----------
T ss_pred CcCchhhHhhhhEEEecCCCCEEEEechhhHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHhCCChh-----------
Confidence 9999999999999998 8999999999999999999999999999999999999999999999998654
Q ss_pred cCCCCCCCCcccccChHHHHhhHHHhhhhhhCCCcccchhhhCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhCCeE
Q 001267 927 HGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRIDNHV 1006 (1112)
Q Consensus 927 ~~~~~p~v~~~~~vt~~~R~~AK~vnfGiiYG~g~~~La~~lgis~~EAk~~id~ff~~yP~Vk~~~~~~~~~A~~~GyV 1006 (1112)
+|++++|+.||++|||++||||+++||+++|||.+||++++++||++||+|++|++.++++|+++|||
T Consensus 412 ------------~vt~~~R~~aK~~~fg~~YG~~~~~La~~l~i~~~eA~~~i~~~~~~~p~v~~~~~~~~~~a~~~Gyv 479 (592)
T 3pv8_A 412 ------------EVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYV 479 (592)
T ss_dssp ------------TCCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEE
T ss_pred ------------hCCHHHHHHHHHHHHHHHhcCChHHHHHHcCCCHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHcCCE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCcccCCCCCccChhhhhhhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHhcCCCceEEeEccceeeeeecchhcHH
Q 001267 1007 HTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSFFSIIVIV 1086 (1112)
Q Consensus 1007 ~Tl~GRrr~lp~~~s~n~~~r~~~eR~avN~~IQGSAADI~K~AMi~i~~~~~l~~~~~~llLqVHDElv~Ev~~~~~ae 1086 (1112)
+|++||||++|+++++|...|+.++|+|+|+|||||||||+|.||+++++.+...+.+++|++||||||+||||+++ ++
T Consensus 480 ~Tl~GRrr~~p~i~s~n~~~r~~~eR~a~N~~iQGsaAdi~k~ami~i~~~l~~~~~~~~l~lqVHDElv~ev~~~~-~~ 558 (592)
T 3pv8_A 480 TTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE-ME 558 (592)
T ss_dssp ECTTCCEEECGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSEEEEEEEGGG-HH
T ss_pred ECCCCCeeeCCCccccchhhhhhhhhhhhchhhhhHHHHHHHHHHHHHHHHHHhcCCCceEEEEEcceeEEEeCHHH-HH
Confidence 99999999999999999999999999999999999999999999999999665556778999999999999999985 99
Q ss_pred HHHHHHHHHhcCCCCCCcccccccC
Q 001267 1087 SCQGIVLANAMHPMFGKSSRLHYDV 1111 (1112)
Q Consensus 1087 ~~~~~v~~~Me~a~~~~~~~l~~d~ 1111 (1112)
++.++|+++|+++ +...+||.||+
T Consensus 559 ~~~~~v~~~Me~a-~~l~VPl~v~~ 582 (592)
T 3pv8_A 559 RLCRLVPEVMEQA-VTLRVPLKVDY 582 (592)
T ss_dssp HHHHHHHHHHHTS-SCCSSCCCEEE
T ss_pred HHHHHHHHHHhhc-ccCCCcEEEEe
Confidence 9999999999999 88999999985
No 3
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=100.00 E-value=1.2e-112 Score=1013.60 Aligned_cols=515 Identities=26% Similarity=0.347 Sum_probs=466.6
Q ss_pred cEEEEEeccCCCCcccCccccccceEEEEeeeCCCcccCCCceEEEEeCCCCChhhhHhhhhhhhcCCCceEEEeccHHH
Q 001267 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFD 447 (1112)
Q Consensus 368 ~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~~~~~~vL~~Lk~~Led~~v~KV~HNaKfD 447 (1112)
+.+|+|||+++++++.++++| ++++ .+ +..++++ .+++.|++||+| +.||+||+|||
T Consensus 11 ~~valDtE~~~~~~~~a~Lvg----i~la--~~--------~~a~~i~-------~~l~~l~~~l~d--~~kV~hn~K~D 67 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLA----LAAA--RG--------GRVHRAP-------EPYKALRDLKEA--RGLLAKDLSVL 67 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEE----EEEE--ET--------TEEEECS-------SHHHHHTTCSSB--CSTTHHHHHHH
T ss_pred CceEEEEEecCCccCcccEEE----EEEE--cC--------CEEEEeh-------hhHHHHHHHHcC--CCEEEeccHHH
Confidence 569999999999999988876 4443 22 2345554 367889999998 67999999999
Q ss_pred HHHHHHcCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhcccccCCCCcccccccchhhhhhccc
Q 001267 448 NHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRR 527 (1112)
Q Consensus 448 l~vL~r~GI~l~~~vfDTmIAAyLLdp~~~~~~s~sLd~La~~~~~~~~~~Lg~~~~l~~~~~~eel~GK~s~k~lfgK~ 527 (1112)
+. ++|+.+. ++||||+||||++|+ + |+|++|+.+ |+++ +++
T Consensus 68 l~---~~Gi~~~-~~fDT~laAyLL~p~-~----~~L~~La~~-------yl~~----------------------~gk- 108 (540)
T 4dfk_A 68 AL---REGLGLP-PGDDPMLLAYLLDPS-N----TTPEGVARR-------YGGE----------------------WTE- 108 (540)
T ss_dssp HH---HTTCCCC-BCCCHHHHHHHHCTT-C----CCHHHHHHH-------HTSC----------------------CCS-
T ss_pred HH---HcCCCCC-cceeHHHHHHHhCCC-C----CCHHHHHHH-------Hhhh----------------------hcc-
Confidence 99 7899987 899999999999998 5 999999987 3311 011
Q ss_pred ccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccCCCCCCCchHHHHHHHHhcchH
Q 001267 528 KLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKL-LEMSWKLDGKPVPGKSMFDFYQEYWQPFG 606 (1112)
Q Consensus 528 k~kkq~s~~~~w~~~pL~~~~~~~~e~~l~YAA~DA~~tlrL~e~L~~kL-ee~~~~~~~~~~~~~~l~~Ly~~IEmPL~ 606 (1112)
+|+.||.++++||+.|.++| ++ .++..+|.++|||++
T Consensus 109 ------------------------------~a~~DA~~t~~L~~~L~~~L~~~------------~~~~~~~~~iE~pl~ 146 (540)
T 4dfk_A 109 ------------------------------EAGERAALSERLFANLWGRLEGE------------ERLLWLYREVERPLS 146 (540)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHTTTC------------HHHHHHHHHTHHHHH
T ss_pred ------------------------------chHHHHHHHHHHHHHHHHHHHhh------------hhhHHHHHHHHhHHH
Confidence 24579999999999999999 54 489999999999999
Q ss_pred HHHHHhhhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccCCCHHHHHHHhhCCCCCCCCCCCCCCccc
Q 001267 607 EILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIER 686 (1112)
Q Consensus 607 ~VLa~ME~~GI~VD~e~L~~L~~~l~~e~e~leeei~~~~~~~~~~g~~fNi~S~kQL~~lLFe~~~~~k~~~l~Lp~er 686 (1112)
+||++||.+||.||.++|+++..++..+++.+++++++.+ |..||++||+||+++||+ ++|||+
T Consensus 147 ~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~------g~~fN~~Spkql~~~Lf~--------~lgl~~-- 210 (540)
T 4dfk_A 147 AVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA------GHPFNLNSRDQLERVLFD--------ELGLPA-- 210 (540)
T ss_dssp HHHHHHHHHCBEECHHHHHHHHHHHHHHHHHHHHHHHHHH------TSCCCTTCHHHHHHHHHT--------TSCCCC--
T ss_pred HHHHHHHhcCEEECHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCCCCCHHHHHHHHHH--------hcCCCC--
Confidence 9999999999999999999999999999999999998774 678999999999999998 688863
Q ss_pred ccccCCCccccccCCCCCcccccchhcccccCCCCcccc-ccCCCcCcHHHH-HHHHhccCccccccCCCCCCCCCCCcc
Q 001267 687 IFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYT-ATGWPSVGGDAL-KTLARNISAEYDCVDGAHDLDDSGCTE 764 (1112)
Q Consensus 687 ~~k~~~~~~~~~~~kk~~~~~~~~~l~~~G~~lp~~~~T-ktG~~Std~~vL-e~La~~~~~~~~~~~~~~~l~~~~~~~ 764 (1112)
.++| ||| |||+++|| +.|+..||+
T Consensus 211 -----------------------------------~~kt~ktg-~st~~~vL~e~L~~~~p~------------------ 236 (540)
T 4dfk_A 211 -----------------------------------IGKTEKTG-KRSTSAAVLEALREAHPI------------------ 236 (540)
T ss_dssp -----------------------------------CCBCTTTC-CBCCCHHHHHHTTTTCTH------------------
T ss_pred -----------------------------------CCCCCCCC-CCCcHHHHHHHhhhcChH------------------
Confidence 1356 789 99999999 999987763
Q ss_pred cccccccccccchhhhhHHHHHHHhHHHHHHHHHHhHhhhhhhhhcccccCCccCCCCceeecccc-cCcccccccCCCC
Q 001267 765 ETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPN 843 (1112)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lle~r~l~Kl~styv~~l~~~~v~~~dGRIH~s~n~-~T~TGRlSss~PN 843 (1112)
++.||+||+++|++|||+++|+. .+++.|||||++||| +|+||||||++||
T Consensus 237 ---------------------------~~~ile~R~l~Kl~sty~~~l~~-~v~~~~gRih~~~~q~~t~TGRlSs~~PN 288 (540)
T 4dfk_A 237 ---------------------------VEKILQYRELTKLKSTYIDPLPD-LIHPRTGRLHTRFNQTATATGRLSSSDPN 288 (540)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHTTTTGGG-GCCTTTCSBCCEEESSCCSSSCCEEESSC
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCEEeeeeecCcccccCccccCCc
Confidence 46799999999999999999997 455678999999998 8999999999999
Q ss_pred cccCCCCccchhhhcceEEcCCCCeEEEecccchhHHHHHHhcCchHHHHHHHcCCCchhHHHhhhccccccccccchhh
Q 001267 844 LQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923 (1112)
Q Consensus 844 LQNIP~~~~~g~~iR~~Fia~~G~~lvsaDySQIELRIlAhlS~D~~Li~af~~G~DiH~~tA~~ifg~~~e~v~~~~~~ 923 (1112)
|||||++++.|+.||+||+|++||+||++||||||||||||||+|+.|+++|++|.|||+.||+.+||++.+
T Consensus 289 lQniP~~~~~g~~iR~~f~a~~G~~lv~aDySqiElRvlAhls~D~~l~~af~~g~Dih~~tA~~~fg~~~~-------- 360 (540)
T 4dfk_A 289 LQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPRE-------- 360 (540)
T ss_dssp CSCCCCSSHHHHHHHTTEECCTTEEEEEEEETTHHHHHHHHHHCCHHHHHHHHTTCCHHHHHHHHHHTCCGG--------
T ss_pred ceeeeccCcchHhhhheEeCCCCCEEEEecHHHHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHcCCChh--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred hcccCCCCCCCCcccccChHHHHhhHHHhhhhhhCCCcccchhhhCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhC
Q 001267 924 LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRID 1003 (1112)
Q Consensus 924 ~~w~~~~~p~v~~~~~vt~~~R~~AK~vnfGiiYG~g~~~La~~lgis~~EAk~~id~ff~~yP~Vk~~~~~~~~~A~~~ 1003 (1112)
+|++++|+.||++|||++||||+++||+++|||.+||++++++||++||+|++|++.++++|+++
T Consensus 361 ---------------~v~~~~R~~aK~~~fg~~YG~~~~~La~~lgis~~eA~~~i~~~~~~~p~v~~~~~~~~~~a~~~ 425 (540)
T 4dfk_A 361 ---------------AVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRR 425 (540)
T ss_dssp ---------------GCCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHH
T ss_pred ---------------hcCHHHHhHHHHHHHhhhhCCchhHHHHHcCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEecccCCcccCCCCCccChhhhhhhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHhcCCCceEEeEccceeeeeecchh
Q 001267 1004 NHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSFFSII 1083 (1112)
Q Consensus 1004 GyV~Tl~GRrr~lp~~~s~n~~~r~~~eR~avN~~IQGSAADI~K~AMi~i~~~~~l~~~~~~llLqVHDElv~Ev~~~~ 1083 (1112)
|||+|++||||++|++++.|...|+.++|+|+|+|||||||||+|.||+++++. +.+.+++|++||||||+||||+++
T Consensus 426 Gyv~Tl~GRrr~~p~~~s~~~~~r~~aeR~a~N~~iQGsaAdi~K~ami~~~~~--l~~~~~~l~lqVHDElv~ev~~~~ 503 (540)
T 4dfk_A 426 GYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPR--LEEMGARMLLQVHDELVLEAPKER 503 (540)
T ss_dssp SEEECTTCCEEECGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTCEEEEECSSEEEEEEEGGG
T ss_pred CcEECCCCCeecCCccccccHHHHhhhhhhHhhhhhHhHHHHHHHHHHHHHHHH--HHhcCCeEEEEEcceEEEEeCHHH
Confidence 999999999999999999999999999999999999999999999999999984 444459999999999999999985
Q ss_pred cHHHHHHHHHHHhcCCCCCCcccccccC
Q 001267 1084 VIVSCQGIVLANAMHPMFGKSSRLHYDV 1111 (1112)
Q Consensus 1084 ~ae~~~~~v~~~Me~a~~~~~~~l~~d~ 1111 (1112)
++++.++|+++|+++ +...+||.||+
T Consensus 504 -~~~~~~~v~~~Me~a-~~l~VPl~v~~ 529 (540)
T 4dfk_A 504 -AEAVARLAKEVMEGV-YPLAVPLEVEV 529 (540)
T ss_dssp -HHHHHHHHHHHHHTS-SCCSSCCCEEE
T ss_pred -HHHHHHHHHHHHhcc-cCCCCceEEee
Confidence 999999999999999 88899999985
No 4
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=100.00 E-value=7.9e-106 Score=994.97 Aligned_cols=556 Identities=25% Similarity=0.286 Sum_probs=479.6
Q ss_pred CCCCCc---cchhhhhcccCCcccccccccccccchhhhhhchhhHHHHhhhhccCCCeEEecCHHHHHHHHHHHhccCC
Q 001267 290 SYTPPP---KLVSFKRSNQKNPKNDAAEGTGQNKKASENENSEKLEILRSKLASFYSNVMVVDNVSAAKKVVWMLTNKYK 366 (1112)
Q Consensus 290 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~lV~t~e~L~~lv~~L~~a~~ 366 (1112)
.+.+|. -...|.+++|++|++.... . .+. .. ..|..|++ ..
T Consensus 260 ~~~~~d~~~l~~~~~~~~f~~~~~~~~~--~----~~~---~~-------------~~~~~~~~-----------~~--- 303 (832)
T 1bgx_T 260 KRREPDRERLRAFLERLEFGSLLHEFGL--L----ESP---KA-------------LEEAPWPP-----------PE--- 303 (832)
T ss_dssp CCCCCCHHHHHHHHTTTTCCSTTCCSCC--C----CCC---SC-------------CEEECSSC-----------CT---
T ss_pred HcCCccHHHHHHHHHHcCCHHHHHhhcc--c----cCC---Cc-------------CceeEeec-----------cC---
Confidence 455553 3467899999999999831 0 000 00 02555655 12
Q ss_pred CcEEEEEeccCCCCcccCccccccceEEEEeeeCCCcccCCCceEEEEeCCCCChhhhHhhhhhhhcCCCceEEEeccHH
Q 001267 367 HLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSF 446 (1112)
Q Consensus 367 ~~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~~~~~~vL~~Lk~~Led~~v~KV~HNaKf 446 (1112)
.+.++|||||++ ++.+.+| ++|++. + +..+|++. + . +.|+++|+++.+ |+||
T Consensus 304 ~~~va~d~et~~--~~~~~l~-----vg~a~~--~-------g~a~yvp~-~----~--~~Lk~lLed~~i-----n~K~ 355 (832)
T 1bgx_T 304 GAFVGFVLSRKE--PMWADLL-----ALAAAR--G-------GRVHRAPE-P----Y--KALRDLKEARGL-----LAKD 355 (832)
T ss_dssp TCCBEEECSSSC--TTTCCCC-----EEECBS--S-------SEEECCSC-H----H--HHHHHCSSBCBT-----THHH
T ss_pred CceEEEEEecCC--cccCcee-----EEEEEc--C-------CCEEEEEC-C----H--HHHHHHHhCCCC-----ChHH
Confidence 146999999998 4455551 223331 1 23567654 2 1 569999999875 9999
Q ss_pred HHHHHHHcCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhcccccCCCCcccccccchhhhhhcc
Q 001267 447 DNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGR 526 (1112)
Q Consensus 447 Dl~vL~r~GI~l~~~vfDTmIAAyLLdp~~~~~~s~sLd~La~~~~~~~~~~Lg~~~~l~~~~~~eel~GK~s~k~lfgK 526 (1112)
|+++|.++|+.+. ++||||||+||++|. . |+|++|+.+| |+
T Consensus 356 d~~~L~~~Gi~~~-~~~Dt~laayLl~p~-~----~~l~~l~~~~---------------------------------gk 396 (832)
T 1bgx_T 356 LSVLALREGLGLP-PGDDPMLLAYLLDPS-N----TTPEGVARRY---------------------------------GG 396 (832)
T ss_dssp HHHHHHHHTCCCC-BCCCHHHHHHHHCTT-C----CSTTHHHHHH---------------------------------SC
T ss_pred HHHHHHHcCCccC-cccCHHHHHHHcCCC-C----CCHHHHHHHh---------------------------------CC
Confidence 9999999999998 889999999999997 4 8999999752 11
Q ss_pred cccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccCCCCCCCchHHHHHHHHhcch
Q 001267 527 RKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLL-EMSWKLDGKPVPGKSMFDFYQEYWQPF 605 (1112)
Q Consensus 527 ~k~kkq~s~~~~w~~~pL~~~~~~~~e~~l~YAA~DA~~tlrL~e~L~~kLe-e~~~~~~~~~~~~~~l~~Ly~~IEmPL 605 (1112)
.| .+ + || .||.++++||+.|.++|. + .+++.+|.++|||+
T Consensus 397 -----------~~--~~---------~----ya-~da~~~~~l~~~l~~~L~~~------------~~~~~l~~~iE~pl 437 (832)
T 1bgx_T 397 -----------EW--TE---------E----AG-ERAALSERLFANLWGRLEGE------------ERLLWLYREVERPL 437 (832)
T ss_dssp -----------CC--CS---------S----HH-HHHHHHHHHHHHHHHHHTTC------------HHHHHHHHTTHHHH
T ss_pred -----------Cc--hH---------H----HH-HHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHH
Confidence 01 01 1 77 699999999999999998 4 47899999999999
Q ss_pred HHHHHHhhhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccCCCHHHHHHHhhCCCCCCCCCCCCCCcc
Q 001267 606 GEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWASKHCPDAKYMNVGSDTQLRQLLFGGKPNSKDDSESLPIE 685 (1112)
Q Consensus 606 ~~VLa~ME~~GI~VD~e~L~~L~~~l~~e~e~leeei~~~~~~~~~~g~~fNi~S~kQL~~lLFe~~~~~k~~~l~Lp~e 685 (1112)
++||++||.+||+||.+.|+++..++..+++.++++++++ +|..||++||+||+++||+ ++|||+
T Consensus 438 ~~vl~~mE~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~------~g~~fN~~Spkql~~~Lf~--------~lglp~- 502 (832)
T 1bgx_T 438 SAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRL------AGHPFNLNSRDQLERVLFD--------ELGLPA- 502 (832)
T ss_dssp HHHHHHHHHHCBCBCTTTHHHHHHHHHHHHHHHHHHHHHS------SSSCCCCSCHHHHTTTTTT--------SCCCCC-
T ss_pred HHHHHHHHHcCeeecHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCcCCCCHHHHHHHHHH--------hcCCCC-
Confidence 9999999999999999999999999999999999999665 5789999999999999998 788863
Q ss_pred cccccCCCccccccCCCCCcccccchhcccccCCCCcccc-ccCCCcCcHHHHHHHHhccCccccccCCCCCCCCCCCcc
Q 001267 686 RIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYT-ATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTE 764 (1112)
Q Consensus 686 r~~k~~~~~~~~~~~kk~~~~~~~~~l~~~G~~lp~~~~T-ktG~~Std~~vLe~La~~~~~~~~~~~~~~~l~~~~~~~ 764 (1112)
.++| |||+|||+++||++|+..||++
T Consensus 503 ------------------------------------~kkt~ktG~~sT~~~vL~~l~~~~p~~----------------- 529 (832)
T 1bgx_T 503 ------------------------------------IGKTEKTGKRSTSAAVLEALREAHPIV----------------- 529 (832)
T ss_dssp ------------------------------------CCSSCCSSSSGGGTSTTTTGGGTCSTT-----------------
T ss_pred ------------------------------------cccccccCCccchHHHHHHhHhcCcHH-----------------
Confidence 2457 8999999999999998777753
Q ss_pred cccccccccccchhhhhHHHHHHHhHHHHHHHHHHhHhhhhhhhhcccccCCccCCCCceeecccc-cCcccccccCCCC
Q 001267 765 ETEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFILPLQGSNVSGKNGRVHCSLNI-NTETGRLSARRPN 843 (1112)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lle~r~l~Kl~styv~~l~~~~v~~~dGRIH~s~n~-~T~TGRlSss~PN 843 (1112)
+.||+||+++|++|||+++|+. .+.+.||||||+||| +|+||||||++||
T Consensus 530 ----------------------------~~ile~R~l~Kl~sty~~~l~~-~v~~~~gRih~~~~q~~t~TGRlSs~~PN 580 (832)
T 1bgx_T 530 ----------------------------EKILQYRELTKLKSTYIDPLPD-LIHPRTGRLHTRFNQTATATGRLSSSDPN 580 (832)
T ss_dssp ----------------------------HHHHTHHHHSCSBTTBCCCTTT-SSCTTTCSBCCEEESSCCSSSCCEEESSC
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHH-hhCCCCCEEeeeeEecccceeeeecCCcc
Confidence 4689999999999999999996 465578999999998 9999999999999
Q ss_pred cccCCCCccchhhhcceEEcCCCCeEEEecccchhHHHHHHhcCchHHHHHHHcCCCchhHHHhhhccccccccccchhh
Q 001267 844 LQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRNAVETGQVL 923 (1112)
Q Consensus 844 LQNIP~~~~~g~~iR~~Fia~~G~~lvsaDySQIELRIlAhlS~D~~Li~af~~G~DiH~~tA~~ifg~~~e~v~~~~~~ 923 (1112)
|||||++++.|+.||+||+|++||+||+|||||||||||||||+|+.|++||++|.|||+.||+.+||++.+
T Consensus 581 LQNiP~~~~~g~~iR~~Fva~~G~~lv~aDySqiElRilAhls~D~~l~~af~~g~Dih~~tA~~~fg~~~e-------- 652 (832)
T 1bgx_T 581 LQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPRE-------- 652 (832)
T ss_dssp TTSCCCSSTTTTTTGGGBCCCSSCCEEEEEESSHHHHHHHHTTTCTTHHHHHHHTCCHHHHHHHHHHTCCTT--------
T ss_pred ccccccCchhhHHhhheEeCCCCCEEEEechhhhHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHhCCChh--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred hcccCCCCCCCCcccccChHHHHhhHHHhhhhhhCCCcccchhhhCCCHHHHHHHHHHHHHhChhHHHHHHHHHHHHHhC
Q 001267 924 LEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEVLTWQEARKKESRID 1003 (1112)
Q Consensus 924 ~~w~~~~~p~v~~~~~vt~~~R~~AK~vnfGiiYG~g~~~La~~lgis~~EAk~~id~ff~~yP~Vk~~~~~~~~~A~~~ 1003 (1112)
+|++++|+.||++|||++||||+++||+++|||.+||++++++||++||+|++|++.++++|+++
T Consensus 653 ---------------~vt~~~R~~aK~~nfgi~YG~~~~gLa~~lgis~~eA~~~i~~~~~~~p~v~~~~~~~~~~a~~~ 717 (832)
T 1bgx_T 653 ---------------AVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRR 717 (832)
T ss_dssp ---------------SCCTTHHHHHHHHHHHTTSCCCHHHHHHHSSCCHHHHHHHHHHHHHHCHHHHHHHHHHTHHHHTT
T ss_pred ---------------hcCHHHHHHHHHHHHhhhcCCchhHHHHHcCCCHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHC
Confidence 45678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEecccCCcccCCCCCccChhhhhhhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHhcCCCceEEeEccceeeeeecchh
Q 001267 1004 NHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVLFFFSFSFFSII 1083 (1112)
Q Consensus 1004 GyV~Tl~GRrr~lp~~~s~n~~~r~~~eR~avN~~IQGSAADI~K~AMi~i~~~~~l~~~~~~llLqVHDElv~Ev~~~~ 1083 (1112)
|||+|++||||++|++++.|...|+.++|+|+|+|||||||||+|.||+++++.+.- .+++|++||||||+||||++.
T Consensus 718 Gyv~Tl~GRrr~~p~i~s~~~~~r~~~eR~a~N~~iQGsAADiik~Ami~~~~~l~~--~~~~lvlqVHDElv~evp~~~ 795 (832)
T 1bgx_T 718 GYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKER 795 (832)
T ss_dssp SSCCCSSCCCCCCGGGSCSSHHHHHHHHHHHTTHHHHTHHHHHHHTHHHHHHHHHHH--HTCEEEEEETTEEEEEC----
T ss_pred CeEEecCCCEEECCcccCCCcchhhhhhhhhccHhhHHHHHHHHHHHHHHHHHHHHh--CCCeEEEEeccEEEEEcCHHH
Confidence 999999999999999999999999999999999999999999999999999985432 478999999999999999985
Q ss_pred cHHHHHHHHHHHhcCCCCCCcccccccC
Q 001267 1084 VIVSCQGIVLANAMHPMFGKSSRLHYDV 1111 (1112)
Q Consensus 1084 ~ae~~~~~v~~~Me~a~~~~~~~l~~d~ 1111 (1112)
++++.++|+++|+++ +...+||.||+
T Consensus 796 -~~~~~~~v~~~M~~a-~~l~VPl~v~~ 821 (832)
T 1bgx_T 796 -AEAVARLAKEVMEGV-YPLAVPLEVEV 821 (832)
T ss_dssp -CHHHHHHHHHHHHSS-SCCSSCCCEEC
T ss_pred -HHHHHHHHHHHHhcc-CCCCCeEEEec
Confidence 889999999999999 77899999986
No 5
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=100.00 E-value=6.8e-102 Score=949.22 Aligned_cols=567 Identities=18% Similarity=0.141 Sum_probs=456.3
Q ss_pred EEEEEeccCCCCcccCccccccceEEEEeeeCCCcccCCCceEEEEeCCCCChhhhHhhhhhhhcCCCceEEEecc-HHH
Q 001267 369 VHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNY-SFD 447 (1112)
Q Consensus 369 ~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~~~~~~vL~~Lk~~Led~~v~KV~HNa-KfD 447 (1112)
+|+|||||||+++..++| .|+.+.... ....+.+|+.. .+..++.|+++|+ +.+.||+||+ +||
T Consensus 1 ~vv~D~ETtGl~~~~d~i------~~iqi~~~~------~~~~~~~~p~~--i~~~l~~L~~~l~-~~~~kV~HNa~kfD 65 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKF------HCGVIYDYS------TAEYVSYRPSD--FGAYLDALEAEVA-RGGLIVFHNGHKYD 65 (698)
T ss_dssp CEEEEEEESSCGGGCCCE------EEEEEEETT------TTEEEEECGGG--HHHHHHHHHHHHH-TTCCEEESSTTTTH
T ss_pred CEEEEcCCCCcCCCCCEE------EEEEEEecC------CCcEEEEChHH--HHHHHHHHHHHHh-cCCeEEEcCChHHH
Confidence 389999999999887655 455554321 12344556532 2456889999999 8889999999 999
Q ss_pred HHHHHHc-------CCCCC-CccchHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhcccccCCCCcccccccch
Q 001267 448 NHVLENY-------GLKVS-GFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKIS 519 (1112)
Q Consensus 448 l~vL~r~-------GI~l~-~~vfDTmIAAyLLdp~~~~~~s~sLd~La~~~~~~~~~~Lg~~~~l~~~~~~eel~GK~s 519 (1112)
+.+|.++ |+.++ +++||||+||||++|... +|+|++|+.+|...+..-+++... ..|..
T Consensus 66 ~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL~p~~~---~~~L~~La~~~L~~sL~~~g~~lg----------~~Ki~ 132 (698)
T 1x9m_A 66 VPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLK---DTDMGLLRSGKLPGALEAWGYRLG----------EMKGE 132 (698)
T ss_dssp HHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSC---CCTTTTSCGGGSCSCCCHHHHHHH----------HHHHH
T ss_pred HHHHHHhhhhcccCCccCCCCcchhHHHHHHHhCCCCC---CCCHHHHHHHHcccchhhhccccc----------ccccC
Confidence 9999877 99887 789999999999999765 699999998742100000022100 00123
Q ss_pred hhhhhc-----ccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--CCCCCCCc
Q 001267 520 MKDIFG-----RRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSWKL--DGKPVPGK 592 (1112)
Q Consensus 520 ~k~lfg-----K~k~kkq~s~~~~w~~~pL~~~~~~~~e~~l~YAA~DA~~tlrL~e~L~~kLee~~~~~--~~~~~~~~ 592 (1112)
+++++| +++.. +. +.+|...+ +.+..||+.||.+|++||+.|.++|++.++.+ .+. ..
T Consensus 133 ~~~~~g~~~~~kg~~~-~~--~~~~~~~~---------~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~~l~~~~~---~~ 197 (698)
T 1x9m_A 133 YKDDFKRMLEEQGEEY-VD--GMEWWNFN---------EEMMDYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDV---GY 197 (698)
T ss_dssp HHHHHHHHHHHTTCCC-CT--TGGGTSCC---------HHHHHHHHHHHHHHHHHHHHHHTCTTTSCTTSCTTSS---CH
T ss_pred HHHHhCcccccccccc-cc--cCCccccC---------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc---cc
Confidence 344554 22110 11 11454322 56889999999999999999999998753210 000 01
Q ss_pred hHH----HHHHHHhcchHHHHHHhhhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhh-h---------cC--------
Q 001267 593 SMF----DFYQEYWQPFGEILVKMETEGMLVDREYLSEIEKVARAEQEAAVNRFRKWAS-K---------HC-------- 650 (1112)
Q Consensus 593 ~l~----~Ly~~IEmPL~~VLa~ME~~GI~VD~e~L~~L~~~l~~e~e~leeei~~~~~-~---------~~-------- 650 (1112)
.+. .+|.++|+|+++||++||++||.||.++|+++..++..+++.+++++++.+. + +.
T Consensus 198 ~~~~~~~~l~~~~E~pl~~vLa~ME~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 277 (698)
T 1x9m_A 198 TTFWSESLEAVDIEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMFCHPRTGKPL 277 (698)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHCEEBCHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEECSCCBCCBCTTTCCBC
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHcCeEeCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhccccccchh
Confidence 122 6899999999999999999999999999999999999999999999998631 0 00
Q ss_pred ---------CCC------------------------------------ccccCCCHHHHHHHhhCCCCCCCCCCCCCCcc
Q 001267 651 ---------PDA------------------------------------KYMNVGSDTQLRQLLFGGKPNSKDDSESLPIE 685 (1112)
Q Consensus 651 ---------~~g------------------------------------~~fNi~S~kQL~~lLFe~~~~~k~~~l~Lp~e 685 (1112)
.+| ..||++||+||+++||+ +|||+
T Consensus 278 ~~~p~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~S~~ql~~~L~~---------lgl~~- 347 (698)
T 1x9m_A 278 PKYPRIKTPKVGGIFKKPKNKAQREGREPCELDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQE---------AGWVP- 347 (698)
T ss_dssp TTSCCBBCCSSCCSBC-------------CCBCCCSBCTTCCBEEEEEECCCTTCHHHHHHHHHH---------TTCCC-
T ss_pred cccccccccccccccccccccccccccccccccchhhccccccccccccccCCCCHHHHHHHHHH---------CCCCC-
Confidence 133 68999999999999995 67752
Q ss_pred cccccCCCccccccCCCCCcccccchhcccccCCCCccccccCCCcCcHHHHHHHHhccCccccccCCCCCCCCCCCccc
Q 001267 686 RIFKVPNTEGVIAEGKKTPSKFRNITLRSIGVDLPTEMYTATGWPSVGGDALKTLARNISAEYDCVDGAHDLDDSGCTEE 765 (1112)
Q Consensus 686 r~~k~~~~~~~~~~~kk~~~~~~~~~l~~~G~~lp~~~~TktG~~Std~~vLe~La~~~~~~~~~~~~~~~l~~~~~~~~ 765 (1112)
.++|+||+|||+++||+.|+.+.|.
T Consensus 348 ------------------------------------~~~t~~G~~st~~~vL~~l~~~~~~------------------- 372 (698)
T 1x9m_A 348 ------------------------------------TKYTDKGAPVVDDEVLEGVRVDDPE------------------- 372 (698)
T ss_dssp ------------------------------------CCBCTTSCBCCSHHHHHHCCCSCHH-------------------
T ss_pred ------------------------------------CCcCCCCCcCCCHHHHHHHHhhccc-------------------
Confidence 3578999999999999999853110
Q ss_pred ccccccccccchhhhhHHHHHHHhHHHHHHHHHHhHhhhhhhhh---cccccCCccCCCCceeecccc-cCcccccccCC
Q 001267 766 TEYKGAVASNNKIFATEQEAREACDAISALCEVCSIDSLISNFI---LPLQGSNVSGKNGRVHCSLNI-NTETGRLSARR 841 (1112)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lle~r~l~Kl~styv---~~l~~~~v~~~dGRIH~s~n~-~T~TGRlSss~ 841 (1112)
..+.++.|++||+++|++|||+ ++|+. . +.+|||||++||+ +|+||||||++
T Consensus 373 ----------------------~~p~~~~lle~r~l~kl~sty~~~~~~l~~-~-v~~dgrih~~~~~~gt~TGRlSs~~ 428 (698)
T 1x9m_A 373 ----------------------KQAAIDLIKEYLMIQKRIGQSAEGDKAWLR-Y-VAEDGKIHGSVNPNGAVTGRATHAF 428 (698)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHTTSTTCHHH-H-CCTTSEECCEEETTCSTTSCCEEES
T ss_pred ----------------------CChHHHHHHHHHHHHHHHHhhhhhHHHHHH-h-cCCCCeEeeeEEeccccccccccCC
Confidence 1345678999999999999999 78886 3 3578999999998 89999999999
Q ss_pred CCcccCCC-CccchhhhcceEEc--------CCCCeEEEecccchhHHHHHHhc---CchHHHHHHHcCCCchhHHHhhh
Q 001267 842 PNLQNQPA-LEKDRYKIRQAFIA--------VPGNSLIVADYGQLELRILAHLA---NCKSMLDAFKAGGDFHSRTAMNM 909 (1112)
Q Consensus 842 PNLQNIP~-~~~~g~~iR~~Fia--------~~G~~lvsaDySQIELRIlAhlS---~D~~Li~af~~G~DiH~~tA~~i 909 (1112)
|||||||+ +++.|++||+||+| +|||+||+||||||||||||||| +|+.|+++|++| |||+.||+ +
T Consensus 429 PNlQniP~~~~~~g~~iR~~F~a~~~~~~~~~~G~~lv~aDySqiElRilAhls~~~~D~~l~~af~~g-DiH~~tA~-~ 506 (698)
T 1x9m_A 429 PNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHFMARFDNGEYAHEILNG-DIHTKNQI-A 506 (698)
T ss_dssp SCTTCCCCTTSTTHHHHHHTBSGGGSBCTTTCCBCEEEEEEETTHHHHHHHHHHHHHHTTHHHHHHHHS-CHHHHHHH-H
T ss_pred ccceeecccccccchhhhheeecCcccccCCCCCCEEEEEehhhhHHHHHHHHhhhcCcHHHHHHHhCC-CHhHHHHH-H
Confidence 99999999 89999999999999 99999999999999999999999 999999999999 99999999 9
Q ss_pred ccccccccccchhhhcccCCCCCCCCcccccChHHHHhhHHHhhhhhhCCCcccchhhhCCCHHHHHHHHHHHHHhChhH
Q 001267 910 YPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWKVSVEEAKKTVDLWYNERQEV 989 (1112)
Q Consensus 910 fg~~~e~v~~~~~~~~w~~~~~p~v~~~~~vt~~~R~~AK~vnfGiiYG~g~~~La~~lgis~~EAk~~id~ff~~yP~V 989 (1112)
||+ | .|+.||++|||++||||+++||+++|||.+||++++++||++||+|
T Consensus 507 ~gv----------------------~--------~R~~aK~~nfg~~YG~g~~~La~~lgis~~eA~~~i~~~~~~~p~v 556 (698)
T 1x9m_A 507 AEL----------------------P--------TRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAI 556 (698)
T ss_dssp SCC----------------------S--------SHHHHHHHHHHHHTTCCHHHHHTTTTCCHHHHHHHHHHHHHTCHHH
T ss_pred hCC----------------------c--------hHhhhHHHHHccccCCCHHHHHHHcCCCHHHHHHHHHHHHHHCcCH
Confidence 985 1 2999999999999999999999999999999999999999999999
Q ss_pred HHH--------------HHHHHHHHHhCCeEecccCCcccCCCCCccChhhhhhhhhhhHhhhhhhHHHHHHHHHHHHHH
Q 001267 990 LTW--------------QEARKKESRIDNHVHTLLGRARRFPAIKSLTRSQRNHIERAAINTPVQGSAADVAMCAMLEIS 1055 (1112)
Q Consensus 990 k~~--------------~~~~~~~A~~~GyV~Tl~GRrr~lp~~~s~n~~~r~~~eR~avN~~IQGSAADI~K~AMi~i~ 1055 (1112)
++| ++.+++.|+++|||+|++||||+++ + +|+|+|+|||||||||+|.||++++
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~gyv~tl~GRrr~~r----------~--~r~a~N~~iQGsaAdi~k~am~~i~ 624 (698)
T 1x9m_A 557 AALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVR----------S--PHAALNTLLQSAGALICKLWIIKTE 624 (698)
T ss_dssp HHHHHHHHHTTBC----------CCBSCSEEECTTSCEEECS----------C--GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhhhhhhhHHHHHHHHHHhCCeEEccCCCeeecc----------c--hhhHhhhhhhHHHHHHHHHHHHHHH
Confidence 999 7777888899999999999999983 2 7999999999999999999999999
Q ss_pred HHHHhcCC------CceEEeEccceeeeeecchhcHHHHHHHHHHHhcCCC--CCCcccccccC
Q 001267 1056 KNARLKEL------GWKLLLQVLFFFSFSFFSIIVIVSCQGIVLANAMHPM--FGKSSRLHYDV 1111 (1112)
Q Consensus 1056 ~~~~l~~~------~~~llLqVHDElv~Ev~~~~~ae~~~~~v~~~Me~a~--~~~~~~l~~d~ 1111 (1112)
+.+...++ +++|++||||||+||||++..++++.++|+++|+++. |...+||.||+
T Consensus 625 ~~l~~~~~~~~~~~~~~lvl~VHDElv~ev~~~~~~~~~~~~~~~~M~~a~~~~~l~vPl~~~~ 688 (698)
T 1x9m_A 625 EMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEG 688 (698)
T ss_dssp HHHHHTTCCBSTTSSEEEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCSSCCCEEE
T ss_pred HHHHhcCCCcccCcceeEEEEeccEEEEEecchhHHHHHHHHHHHHHHhhhhccCCCeeEEEec
Confidence 86554455 6799999999999999997448899999999999983 25689998874
No 6
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=100.00 E-value=3.7e-44 Score=436.99 Aligned_cols=231 Identities=16% Similarity=0.143 Sum_probs=192.4
Q ss_pred CCCceeecccc-cCcccccccCCCCcccCCCCccchhhhcceEEcCCCCeEEEecccchhHHHHHHhcCchHH-------
Q 001267 820 KNGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAVPGNSLIVADYGQLELRILAHLANCKSM------- 891 (1112)
Q Consensus 820 ~dGRIH~s~n~-~T~TGRlSss~PNLQNIP~~~~~g~~iR~~Fia~~G~~lvsaDySQIELRIlAhlS~D~~L------- 891 (1112)
..||||+.+++ ||+|||..++.||..+.|.....|++||+||+|++||+||+|||||||||| ||+++|+.|
T Consensus 769 ~~g~I~p~v~~~GtvT~Ra~~~~~~tas~~~~~~~GreiR~aFva~~G~~lvsADySQIELRI-Aals~D~~l~~~~g~~ 847 (1172)
T 3ikm_A 769 LYGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWI-AAVLGDAHFAGMHGCT 847 (1172)
T ss_dssp CCCBCCCCCCSSCTTTCCCCCTTGGGCCCCSSCSTTSCCHHHHCCCTTEEEEEEECTTHHHHH-HHHHHHHHSSSTTCST
T ss_pred cCceeeeeeeecCccccccccCCcceecCCCCChhhHHhHheEeCCCCCEEEEecccHHHHHH-HHHcCChhhccccccc
Confidence 46999999998 999999877777777777777778899999999999999999999999998 889999988
Q ss_pred -------HHHHHcCCCchhHHHhhhccccccccccchhhhcccCCCCCCCCcccccChHHHHhhHHHhhhhhhCCCc---
Q 001267 892 -------LDAFKAGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTP--- 961 (1112)
Q Consensus 892 -------i~af~~G~DiH~~tA~~ifg~~~e~v~~~~~~~~w~~~~~p~v~~~~~vt~~~R~~AK~vnfGiiYG~g~--- 961 (1112)
+.+|.+|.|||+.||+.+ |+ .|+.||++|||+|||||+
T Consensus 848 A~~~~~L~~af~~g~DIH~~TA~~v-gi-------------------------------~Rr~AK~vNFGiIYG~g~~~a 895 (1172)
T 3ikm_A 848 AFGWMTLQGRKSRGTDLHSKTATTV-GI-------------------------------SREHAKIFNYGRIYGAGQPFA 895 (1172)
T ss_dssp TTTTTCSCCTTTCTHHHHHHHHHTT-CC-------------------------------CSHHHHHHHHHHHHSCCTHHH
T ss_pred chhhhhhhhhhccCCcHHHHHHHHh-CC-------------------------------ChhhchheeeehhcCCchHHH
Confidence 456899999999999976 42 399999999999999997
Q ss_pred ccchhhhC--CCHHHHHHHHHHHHHhChhHHHHHH-----HHHH------HHHhCCeEe--------------------c
Q 001267 962 VGLARDWK--VSVEEAKKTVDLWYNERQEVLTWQE-----ARKK------ESRIDNHVH--------------------T 1008 (1112)
Q Consensus 962 ~~La~~lg--is~~EAk~~id~ff~~yP~Vk~~~~-----~~~~------~A~~~GyV~--------------------T 1008 (1112)
++|++++| ||.+||+++|++||++||+|+.|+. .... .+.+.||+. +
T Consensus 896 ~gL~~ql~~~is~~eAk~~i~~yf~~y~gv~~y~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~~~s~~~~~~ 975 (1172)
T 3ikm_A 896 ERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWE 975 (1172)
T ss_dssp HHHHHHHSCTTHHHHHHHHHHHHHHHHHCSSSSCSSSCHHHHHHHHHSSSSCCCCSSCCCCCCCHHHHSCSSSCHHHHTT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhCcChhhhhhccccchhhhhccccccccccccchhhhhhhhhhcccccccccccc
Confidence 99999988 9999999999999999999998741 1111 134567765 6
Q ss_pred ccCCcccCCCCCc---------------cCh-------------hhhhhhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHh
Q 001267 1009 LLGRARRFPAIKS---------------LTR-------------SQRNHIERAAINTPVQGSAADVAMCAMLEISKNARL 1060 (1112)
Q Consensus 1009 l~GRrr~lp~~~s---------------~n~-------------~~r~~~eR~avN~~IQGSAADI~K~AMi~i~~~~~l 1060 (1112)
++||++++.+..| +.. ..++...|+++|++|||||+|++|++||.++..+..
T Consensus 976 ~~~r~~w~GGtES~mFNkLE~iA~s~~P~TP~LGc~It~AL~~~~~~~~~~~sriNw~iQsSa~D~lhl~~v~m~~l~~~ 1055 (1172)
T 3ikm_A 976 VVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEE 1055 (1172)
T ss_dssp TTTTHHHHHHHHHHHHSCSSSSSCCSSSCCCC---------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccceecCChhHHHHHHHHHHhccCCCCCCcccchhhhhhCccccccchhhhhhchhccchHHHHHHHHHHHHHHHHHH
Confidence 8888876521111 111 134455789999999999999999999999986666
Q ss_pred cCCCceEEeEccceeeeeecchh
Q 001267 1061 KELGWKLLLQVLFFFSFSFFSII 1083 (1112)
Q Consensus 1061 ~~~~~~llLqVHDElv~Ev~~~~ 1083 (1112)
.+..+||++||||||+|+|+++.
T Consensus 1056 ~~l~ar~~l~vHDEl~~~v~~~d 1078 (1172)
T 3ikm_A 1056 FAIDGRFCISIHDEVRYLVREED 1078 (1172)
T ss_dssp SSCCCBCCCCBTTEEEEEEESTT
T ss_pred hCCCceEEEEEcceEEEeccHHH
Confidence 66789999999999999999875
No 7
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.81 E-value=3.9e-19 Score=203.41 Aligned_cols=208 Identities=15% Similarity=0.101 Sum_probs=156.6
Q ss_pred CeEEecCHHHHHHHHHHHhccCCCcEEEEEeccCCCCcccCccccccceEEEEeeeCCCcccCCCceEEEEeCCCCChhh
Q 001267 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRD 423 (1112)
Q Consensus 344 ~y~lV~t~e~L~~lv~~L~~a~~~~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~~~~~~ 423 (1112)
+|.+|++.+++.++++.+... +.|+||||+++.+++.+.+++ +++.. +...+++|+... .
T Consensus 2 ~~~~I~t~~~l~~~~~~l~~~---~~va~D~E~~~~~~~~~~l~l------iqla~--------~~~~~lid~~~l---~ 61 (375)
T 1yt3_A 2 NYQMITTDDALASLCEAVRAF---PAIALDTEFVRTRTYYPQLGL------IQLFD--------GEHLALIDPLGI---T 61 (375)
T ss_dssp CCEEECSHHHHHHHHHHHTTS---SEEEEEEEEECCSCSSCEEEE------EEEEC--------SSCEEEECGGGC---S
T ss_pred CeEEeCCHHHHHHHHHHHcCC---CeEEEEeeecCCCcCCCceEE------EEEec--------CCcEEEEeCCCC---C
Confidence 578999999999999988764 689999999998877665543 33332 223566664322 1
Q ss_pred hHhhhhhhhcCCCceEEEeccHHHHHHHHH-cCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhc
Q 001267 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLEN-YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502 (1112)
Q Consensus 424 vL~~Lk~~Led~~v~KV~HNaKfDl~vL~r-~GI~l~~~vfDTmIAAyLLdp~~~~~~s~sLd~La~~~~~~~~~~Lg~~ 502 (1112)
.+..|+++|+|+.+.||+||+++|+.+|.+ +|+.+. .+|||++|+|++++.. ++||++|+++ ++++.
T Consensus 62 ~~~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi~~~-~~fDt~lAa~lL~~~~----~~~L~~L~~~-------~l~~~ 129 (375)
T 1yt3_A 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQ-PLIDTQILAAFCGRPM----SWGFASMVEE-------YSGVT 129 (375)
T ss_dssp CCHHHHHHHHCTTSEEEESSCHHHHHHHHHHHSSCCS-SEEEHHHHHHHTTCCT----TCCHHHHHHH-------HHCCC
T ss_pred ChHHHHHHHcCCCceEEEeeHHHHHHHHHHHcCCCCC-cEEEcHHHHHHcCCCC----ChhHHHHHHH-------HcCCC
Confidence 456799999999999999999999999986 899886 6899999999999953 5999999987 55443
Q ss_pred ccccCCCCcccccccchhhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001267 503 KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMSW 582 (1112)
Q Consensus 503 ~~l~~~~~~eel~GK~s~k~lfgK~k~kkq~s~~~~w~~~pL~~~~~~~~e~~l~YAA~DA~~tlrL~e~L~~kLee~~~ 582 (1112)
+ .|+. +. .+|..+|++ +.+..|||.||.++++||+.|.++|++.
T Consensus 130 --l-------------------~K~~---~~---sdw~~rpL~-------~~q~~YAa~Da~~l~~L~~~L~~~L~~~-- 173 (375)
T 1yt3_A 130 --L-------------------DKSE---SR---TDWLARPLT-------ERQCEYAAADVWYLLPITAKLMVETEAS-- 173 (375)
T ss_dssp --C-------------------CCTT---TT---SCTTSSSCC-------HHHHHHHHHHHHTHHHHHHHHHHHHHHT--
T ss_pred --C-------------------CCCc---cc---CCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 0 0111 11 378888874 4689999999999999999999999873
Q ss_pred ccCCCCCCCchHHHH-HHHHhcchHHHHHHhh-------hcC-cccCHHHHHHHHH
Q 001267 583 KLDGKPVPGKSMFDF-YQEYWQPFGEILVKME-------TEG-MLVDREYLSEIEK 629 (1112)
Q Consensus 583 ~~~~~~~~~~~l~~L-y~~IEmPL~~VLa~ME-------~~G-I~VD~e~L~~L~~ 629 (1112)
++.++ |+++|+|+..+...+. ..| +.++...+..+..
T Consensus 174 ----------g~~~l~~~e~E~pl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (375)
T 1yt3_A 174 ----------GWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQL 219 (375)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHCCCCGGGGGGGSTTGGGSCHHHHHHHHH
T ss_pred ----------CcHHHHHHHHHHHHhhcccCCCchHHHHhccCcccCCHHHHHHHHH
Confidence 55677 9999999999875432 223 4456555555544
No 8
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.78 E-value=5e-18 Score=197.23 Aligned_cols=173 Identities=21% Similarity=0.186 Sum_probs=139.8
Q ss_pred CCeEEecCHHHHHHHHHHHhccCCCcEEEEEeccCCCCcccCccccccceEEEEeeeCCCcccCCCceEEEEeCCCCChh
Q 001267 343 SNVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR 422 (1112)
Q Consensus 343 ~~y~lV~t~e~L~~lv~~L~~a~~~~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~~~~~ 422 (1112)
..|.+|++.++|.++++.+.+. +.||||||+++.+++.+.+++ ++++ ++...++||+... .
T Consensus 108 ~~y~~I~t~e~L~~~l~~L~~~---~~vavDtE~~~~~~~~~~l~l------IQLa--------~~~~~~lidpl~l--~ 168 (428)
T 3saf_A 108 TPCHFISSLDELVELNEKLLNC---QEFAVNLEHHSYRSFLGLTCL------MQIS--------TRTEDFIIDTLEL--R 168 (428)
T ss_dssp SCEEEECSHHHHHHHHHHHTTC---SEEEEEEEEECTTCSSCEEEE------EEEE--------CSSCEEEEETTTT--G
T ss_pred CCcEEECCHHHHHHHHHHHhcC---CeEEEEEEecCCCCCCCeEEE------EEEE--------eCCcEEEEEeccc--h
Confidence 4589999999999999999875 689999999999988766654 3333 2234678887654 2
Q ss_pred hhHhhhhhhhcCCCceEEEeccHHHHHHHH-HcCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhh
Q 001267 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLE-NYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAY 501 (1112)
Q Consensus 423 ~vL~~Lk~~Led~~v~KV~HNaKfDl~vL~-r~GI~l~~~vfDTmIAAyLLdp~~~~~~s~sLd~La~~~~~~~~~~Lg~ 501 (1112)
..+..|+++|+|+.+.||+||+++|+.+|. .+|+.+.+ +||||+|+|+++++ .+||+.|+.+ +|++
T Consensus 169 ~~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~-~fDT~lAa~lL~~~-----~~gL~~Lv~~-------~Lg~ 235 (428)
T 3saf_A 169 SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVN-MFDTHQAARLLNLG-----RHSLDHLLKL-------YCNV 235 (428)
T ss_dssp GGGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSS-EEEHHHHHHHTTCS-----CCSHHHHHHH-------HHCC
T ss_pred hhHHHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCc-eeechhHHHHhCCC-----CCCHHHHHHH-------HcCC
Confidence 467889999999999999999999999995 78998754 89999999999975 3899999987 6665
Q ss_pred cccccCCCCcccccccchhhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001267 502 QKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEMS 581 (1112)
Q Consensus 502 ~~~l~~~~~~eel~GK~s~k~lfgK~k~kkq~s~~~~w~~~pL~~~~~~~~e~~l~YAA~DA~~tlrL~e~L~~kLee~~ 581 (1112)
. + +|+. +. .+|..+||+ +.+..|||.||.++++||+.|.++|.+.+
T Consensus 236 ~--l-------------------~K~~---~~---sdW~~rpLs-------~~q~~YAA~DA~~ll~L~~~L~~~L~~~g 281 (428)
T 3saf_A 236 D--S-------------------NKQY---QL---ADWRIRPLP-------EEMLSYARDDTHYLLYIYDKMRLEMWERG 281 (428)
T ss_dssp C--C-------------------CCTT---TT---SCTTCSSCC-------HHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred C--C-------------------Cccc---cc---cccccCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3 1 1111 11 379999984 67899999999999999999999998753
No 9
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.73 E-value=1.7e-17 Score=174.32 Aligned_cols=182 Identities=18% Similarity=0.151 Sum_probs=132.8
Q ss_pred hhhccCCCeEEecCHHHHHHHH----HHHhccCCCcEEEEEeccCCC--CcccCccccccceEEEEeeeCCCcccCCCce
Q 001267 337 KLASFYSNVMVVDNVSAAKKVV----WMLTNKYKHLVHACDTEVAKI--DVKQETPVDHGEVICFSIYSGPEADFGNGKS 410 (1112)
Q Consensus 337 ~~~~~~~~y~lV~t~e~L~~lv----~~L~~a~~~~~VAfDTETtGL--d~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~ 410 (1112)
++..+++++.+|++++++..++ +.+... +.|+||||+++. +.+.+.+++ ++++. . ...
T Consensus 9 p~~~f~g~i~~i~~~~~~~~~~~~~~~~l~~~---~~v~~D~E~~~~~~~~~~~~~~~----iqla~--~-------~~~ 72 (208)
T 2e6m_A 9 PFLEFPGSIVYSYEASDCSFLSEDISMRLSDG---DVVGFDMEWPPIYKPGKRSRVAV----IQLCV--S-------ESK 72 (208)
T ss_dssp CBCCCCSEEEEECSHHHHHHHHHHHHHHCCTT---CEEEEEEECCC---CCSCCCCCE----EEEEC--S-------SSE
T ss_pred CccccCCcEEEEeCHHHHHHHHHHHHHHhccC---CEEEEEeecCCCCCCCCCCCeEE----EEEec--C-------CCe
Confidence 3456788999999999999544 555443 579999999987 554555543 33332 1 134
Q ss_pred EEEEeCCCCChhhhHhhhhhhhcCCCceEEEeccHHHHHHHHH-cCCCCCCccch-HHHHHHhcCCCCCCCCCCCHHHHH
Q 001267 411 CIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN-YGLKVSGFHAD-TMHMARLWDSSRRTEGGYSLEALT 488 (1112)
Q Consensus 411 ~~~ID~~~~~~~~vL~~Lk~~Led~~v~KV~HNaKfDl~vL~r-~GI~l~~~vfD-TmIAAyLLdp~~~~~~s~sLd~La 488 (1112)
++|+|+... ....+.|+++|+|+.+.||+||+|+|+.+|.+ +|+.+.+ +|| |++|+||++|.. ++||++|+
T Consensus 73 ~~~i~~~~~--~~~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~-~fDlt~lAayll~~~~----~~~L~~L~ 145 (208)
T 2e6m_A 73 CYLFHISSM--SVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLES-FVELTDVANEKLKCAE----TWSLNGLV 145 (208)
T ss_dssp EEEECGGGC--SSCCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCS-EEEHHHHHHHHTTCCC----CCCHHHHH
T ss_pred EEEEECccc--ccchHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCC-EEEHHHHHHHHccCCC----ChhHHHHH
Confidence 677876432 12456799999999999999999999999987 8999988 899 999999999843 59999999
Q ss_pred hccccccccchhhcccccCCCCcccccccchhhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHH
Q 001267 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLK 568 (1112)
Q Consensus 489 ~~~~~~~~~~Lg~~~~l~~~~~~eel~GK~s~k~lfgK~k~kkq~s~~~~w~~~pL~~~~~~~~e~~l~YAA~DA~~tlr 568 (1112)
.+ +|++. + . | +|. .+. .+|..+|++ +.+..|||.||.++++
T Consensus 146 ~~-------~l~~~--~---------~-K-------~k~---~~~---s~W~~~~L~-------~~q~~YAa~Da~~~~~ 186 (208)
T 2e6m_A 146 KH-------VLGKQ--L---------L-K-------DKS---IRC---SNWSNFPLT-------EDQKLYAATDAYAGLI 186 (208)
T ss_dssp HH-------HHSCB--C---------C-C-------CHH---HHT---SCTTSSSCC-------HHHHHHHHHHHHHHHH
T ss_pred HH-------HcCCC--c---------C-C-------CCC---eee---CCCCCCCCC-------HHHHHHHHHHHHHHHH
Confidence 87 45442 0 0 1 111 011 379888874 5689999999999999
Q ss_pred HHHHHHHHHhhc
Q 001267 569 LYKSLKKKLLEM 580 (1112)
Q Consensus 569 L~e~L~~kLee~ 580 (1112)
||+.|.++|++.
T Consensus 187 L~~~L~~~L~~~ 198 (208)
T 2e6m_A 187 IYQKLGNLGDTV 198 (208)
T ss_dssp HHHHHHTCC---
T ss_pred HHHHHHhccchh
Confidence 999999998764
No 10
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.71 E-value=1.1e-16 Score=185.48 Aligned_cols=171 Identities=24% Similarity=0.231 Sum_probs=133.8
Q ss_pred CeEEecCHHHHHHHHHHHhccCCCcEEEEEeccCCCCcccCccccccceEEEEeeeCCCcccCCCceEEEEeCCCCChhh
Q 001267 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRD 423 (1112)
Q Consensus 344 ~y~lV~t~e~L~~lv~~L~~a~~~~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~~~~~~ 423 (1112)
.|.+|++.+++.++++.|... +.|+||||+++.+++.+.+++ +++.. ++..+++|+... ..
T Consensus 86 ~~~~I~t~~~L~~~~~~L~~~---~~vavDtE~~~~~~~~~~l~l------iQla~--------~~~~ylid~l~l--~~ 146 (410)
T 2hbj_A 86 VPIWVDTSTELESMLEDLKNT---KEIAVDLEHHDYRSYYGIVCL------MQIST--------RERDYLVDTLKL--RE 146 (410)
T ss_dssp CCEEECSHHHHHHHHHHHTTC---SEEEEEEEEECSSSSSCEEEE------EEEEC--------SSCEEEEETTTT--TT
T ss_pred CcEEeCCHHHHHHHHHHHhhC---CceEEEeeecCCcCCCCcEEE------EEEEE--------CCcEEEEechhh--hh
Confidence 467899999999999988765 589999999998766655543 33332 223566775432 23
Q ss_pred hHhhhhhhhcCCCceEEEeccHHHHHHHHH-cCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhc
Q 001267 424 LLNEFAPFFEDPSIKKVWHNYSFDNHVLEN-YGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQ 502 (1112)
Q Consensus 424 vL~~Lk~~Led~~v~KV~HNaKfDl~vL~r-~GI~l~~~vfDTmIAAyLLdp~~~~~~s~sLd~La~~~~~~~~~~Lg~~ 502 (1112)
.+..|+++|+|+.+.||+||+++|+.+|.+ +|+.+.+ +|||++|+||+++. ++||+.|+.+ ++++.
T Consensus 147 ~l~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~-~fDt~lAa~LL~~~-----~~~L~~L~~~-------~lg~~ 213 (410)
T 2hbj_A 147 NLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVG-LFDTYHASKAIGLP-----RHSLAYLLEN-------FANFK 213 (410)
T ss_dssp TGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSS-EEEHHHHHHHHTCS-----CCSHHHHHHH-------HSCCC
T ss_pred hHHHHHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCC-EEEcHHHHHHhCCC-----ccCHHHHHHH-------HcCCC
Confidence 567899999999999999999999999977 8999877 99999999999986 3899999987 45442
Q ss_pred ccccCCCCcccccccchhhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001267 503 KDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEM 580 (1112)
Q Consensus 503 ~~l~~~~~~eel~GK~s~k~lfgK~k~kkq~s~~~~w~~~pL~~~~~~~~e~~l~YAA~DA~~tlrL~e~L~~kLee~ 580 (1112)
. +|+. +. .+|..+|++ +.+..|||.||.++++||+.|.++|++.
T Consensus 214 ------------l---------~K~~---~~---sdW~~rpL~-------~~q~~YAa~Da~~ll~L~~~L~~~L~~~ 257 (410)
T 2hbj_A 214 ------------T---------SKKY---QL---ADWRIRPLS-------KPMTAAARADTHFLLNIYDQLRNKLIES 257 (410)
T ss_dssp ------------C---------CCTT---TT---SCTTCSSCC-------HHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred ------------C---------Cccc---cc---cCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 1221 11 379888874 4689999999999999999999999874
No 11
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.52 E-value=5.5e-14 Score=164.23 Aligned_cols=171 Identities=19% Similarity=0.133 Sum_probs=129.0
Q ss_pred CeEEecCHHHHHHHHHHHhccCCCcEEEEEeccCCCCcccCccccccceEEEEeeeCCCcccCCCceEEEEeCCCCChh-
Q 001267 344 NVMVVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGR- 422 (1112)
Q Consensus 344 ~y~lV~t~e~L~~lv~~L~~a~~~~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~~~~~- 422 (1112)
.+.+|++.+++.++++.|.... +.|+||||+++.+.+.+.+++ ++|+.. +...+|||+... .
T Consensus 17 ~~~~I~t~e~L~~~~~~L~~~~--~~vavDtE~~~~~~~~~~l~l----iQla~~---------~~~~~lid~l~~--~~ 79 (440)
T 3cym_A 17 VPNVIDTLPAFRDYCSELASSH--GSLAADAERASGFRYGHEDWL----VQFKRD---------GAGIGLLDPQAL--AA 79 (440)
T ss_dssp CCCEECSHHHHHHHHHHHHSCE--EEEEEEEEECTTTSSSCCEEE----EEEEEE---------TTEEEEECHHHH--HH
T ss_pred CCEeeCCHHHHHHHHHHHHhcC--CeEEEEeeecCCCCCCCCEEE----EEEEEC---------CCcEEEEEcCCc--cc
Confidence 3468999999999999886631 579999999988776665554 334321 123577776310 1
Q ss_pred --hhHhhhhhhhcCCCceEEEeccHHHHHHHHHcCCCCCCccchHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchh
Q 001267 423 --DLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKA 500 (1112)
Q Consensus 423 --~vL~~Lk~~Led~~v~KV~HNaKfDl~vL~r~GI~l~~~vfDTmIAAyLLdp~~~~~~s~sLd~La~~~~~~~~~~Lg 500 (1112)
..+..|+++|+|+ .||+||+++|+.+|..+|+.+. .+|||++|+|++++. ++||+.|+.. +++
T Consensus 80 ~~~~l~~L~~lL~d~--~KV~h~~k~Dl~~L~~~gi~~~-~~fDt~lAa~lL~~~-----~~gL~~L~~~-------~lg 144 (440)
T 3cym_A 80 AGADWNDFNRAVGDA--VWILHDSLQDLPGFDELGMEPQ-RLFDTEIAARLLGLK-----RFGLAAVTEH-------FLG 144 (440)
T ss_dssp TTCCHHHHHHHHTTC--EEEESSHHHHHHHHHHHTCCCC-EEEEHHHHHHHTTCS-----SCSHHHHHHH-------HHC
T ss_pred cccCHHHHHHHHCCC--CEEEEcCHHHHHHHHHcCCcCC-ceehHHHHHHHhCCC-----CCCHHHHHHH-------HhC
Confidence 1256899999996 6999999999999988899886 789999999999984 4999999987 555
Q ss_pred hcccccCCCCcccccccchhhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001267 501 YQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLYKSLKKKLLEM 580 (1112)
Q Consensus 501 ~~~~l~~~~~~eel~GK~s~k~lfgK~k~kkq~s~~~~w~~~pL~~~~~~~~e~~l~YAA~DA~~tlrL~e~L~~kLee~ 580 (1112)
+. + .|+. +. .+|..+|++ +.+..|||.||.++++||+.|..+|.+.
T Consensus 145 ~~--~-------------------~K~~---~~---sdw~~rpLs-------~~q~~YAa~Da~~Ll~L~~~L~~~L~~~ 190 (440)
T 3cym_A 145 LT--L-------------------AKEH---SA---ADWSYRPLP-------RDWRNYAALDVELLIELETKMRAELKRQ 190 (440)
T ss_dssp EE--C-------------------CCCC---TT---CCTTCSSCC-------HHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CC--c-------------------cccc---cc---CCCcCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 43 0 0111 11 378888874 4689999999999999999999999874
No 12
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.39 E-value=7.2e-13 Score=140.27 Aligned_cols=169 Identities=11% Similarity=0.012 Sum_probs=115.7
Q ss_pred EEecCHHHHHHHHHHHhc----cCCCcEEEEEeccCCCC------ccc--CccccccceEEEEeeeCCCcccCCCceEEE
Q 001267 346 MVVDNVSAAKKVVWMLTN----KYKHLVHACDTEVAKID------VKQ--ETPVDHGEVICFSIYSGPEADFGNGKSCIW 413 (1112)
Q Consensus 346 ~lV~t~e~L~~lv~~L~~----a~~~~~VAfDTETtGLd------~~~--d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ 413 (1112)
..|++.+++..+++.+.. .. ..+|+||||+.... .+. +.+ |+ +|+.++..++.
T Consensus 22 ~~v~~~~~l~~~~~~~~~~~~~~~-~~vvg~DtEw~p~~~~~~~~~~~~~~~~-------~L-------iQla~~~~~~l 86 (206)
T 1vk0_A 22 IDVGSSTDISPYLSLIREDSILNG-NRAVIFDVYWDVGFPETETKTKTSGWSL-------SS-------VKLSTRNLCLF 86 (206)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHS-TTEEEEEEEEECCC------CGGGGCEE-------EE-------EEEECSSEEEE
T ss_pred EEEecHHHHHHHHHHHHHhhhhcC-CCEEEEEeeccCCCcccccccCCCCCce-------EE-------EEEecCCCeEE
Confidence 456777777777777621 11 25899999998432 122 122 21 44445555666
Q ss_pred EeCCCCChhhhHhhhhhhhcCCCceEEEeccHHHHHHHHH-cCCCCCCccchHH-HHHHhcCCC-CCCCCCCCHHHHHhc
Q 001267 414 VDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN-YGLKVSGFHADTM-HMARLWDSS-RRTEGGYSLEALTGD 490 (1112)
Q Consensus 414 ID~~~~~~~~vL~~Lk~~Led~~v~KV~HNaKfDl~vL~r-~GI~l~~~vfDTm-IAAyLLdp~-~~~~~s~sLd~La~~ 490 (1112)
+++.. .....+..|+++|+|+.+.||||++++|+..|++ +|+.+. ++|||. +|+.+++.. .. .+||+.|++.
T Consensus 87 ~~l~~-~~~~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~-~~~Dl~~la~~~lg~~~~~---~~gL~~Lv~~ 161 (206)
T 1vk0_A 87 LRLPK-PFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIR-NAINVGKLAAEARGTLVLE---FLGTRELAHR 161 (206)
T ss_dssp EECCS-SCCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCS-SEEEHHHHHHHHHTCGGGG---GCCHHHHHHH
T ss_pred Eeccc-cCCccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcC-CeeeHHHHHHHHcCCCCCC---CccHHHHHHH
Confidence 66621 1123455688999999999999999999999976 798774 489986 777776631 22 5899999987
Q ss_pred cccccccchhhcccccCCCCcccccccchhhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHHHH
Q 001267 491 RKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLKLY 570 (1112)
Q Consensus 491 ~~~~~~~~Lg~~~~l~~~~~~eel~GK~s~k~lfgK~k~kkq~s~~~~w~~~pL~~~~~~~~e~~l~YAA~DA~~tlrL~ 570 (1112)
+||.. + | .|.. +. ++|.. || ++.|+.|||.||.++++||
T Consensus 162 -------~lg~~-----------l--K-------~k~~---~~---SdW~~-pL-------s~~Qi~YAA~Da~~l~~l~ 200 (206)
T 1vk0_A 162 -------VLWSD-----------L--G-------QLDS---IE---AKWEK-AG-------PEEQLEAAAIEGWLIVNVW 200 (206)
T ss_dssp -------HHCCC-----------C--H-------HHHH---HH---HTGGG-SC-------HHHHHHHHHHHHHHHHHHH
T ss_pred -------HhCCc-----------C--C-------CCCc---cc---CCCCC-cC-------CHHHHHHHHHHHHHHHHHH
Confidence 55542 1 1 0100 11 38999 98 5889999999999999999
Q ss_pred HHHHH
Q 001267 571 KSLKK 575 (1112)
Q Consensus 571 e~L~~ 575 (1112)
++|.+
T Consensus 201 ~~L~~ 205 (206)
T 1vk0_A 201 DQLSD 205 (206)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 99864
No 13
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.93 E-value=3.1e-09 Score=113.55 Aligned_cols=165 Identities=14% Similarity=0.089 Sum_probs=102.7
Q ss_pred EecCHHHHHHHHHHHhccCCCcEEEEEeccCCCCcccCccccccceEEEEeeeC-CC-cccCCCceEEEEeCC-------
Q 001267 347 VVDNVSAAKKVVWMLTNKYKHLVHACDTEVAKIDVKQETPVDHGEVICFSIYSG-PE-ADFGNGKSCIWVDLL------- 417 (1112)
Q Consensus 347 lV~t~e~L~~lv~~L~~a~~~~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~-~~-IqI~~~~~~~~ID~~------- 417 (1112)
-|++.+++..+...+... .+|+||+||||+++..++||++| ++.+... .+ +.+.. ....+|.+.
T Consensus 20 ~~~~~~~~~~l~~~l~~~---~~vviD~ETTGl~~~~~~IieIg---av~~~~~~~g~i~~~~-~f~~~v~P~~~~~i~~ 92 (235)
T 3v9w_A 20 HMSDNAQLTGLCDRFRGF---YPVVIDVETAGFNAKTDALLEIA---AITLKMDEQGWLMPDT-TLHFHVEPFVGANLQP 92 (235)
T ss_dssp ---------CHHHHTTTE---EEEEEEEEESSSCTTTBCEEEEE---EEEEEECTTSCEEEEE-EEEEEBCCCTTCBCCH
T ss_pred cccccccccCchhcccCC---cEEEEEEeCCCCCCCCCeEEEEE---EEEEEEcCCCcccccc-eEEEEECCCCCCCCCH
Confidence 466777888888888775 69999999999999888888733 2222100 11 10000 011123221
Q ss_pred ------C----------CChhhhHhhhhhhhcC-------CCceEEEeccHHHHHHHHH----cCCCCC----CccchHH
Q 001267 418 ------D----------GGGRDLLNEFAPFFED-------PSIKKVWHNYSFDNHVLEN----YGLKVS----GFHADTM 466 (1112)
Q Consensus 418 ------~----------~~~~~vL~~Lk~~Led-------~~v~KV~HNaKfDl~vL~r----~GI~l~----~~vfDTm 466 (1112)
+ .+..+++..|.+++.+ ....+|+||++||+.+|.+ +|+... ..++||+
T Consensus 93 ~~~~i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~ 172 (235)
T 3v9w_A 93 EALAFNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTA 172 (235)
T ss_dssp HHHHHHCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHH
T ss_pred HHHHHhCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhH
Confidence 0 1123467778887752 3567899999999999864 587532 3588999
Q ss_pred HHHHhcCCCCCCCCCCCHHHHHhccccccccchhhcccccCCCCcccccccchhhhhhcccccccCCCCCccccccchhH
Q 001267 467 HMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEE 546 (1112)
Q Consensus 467 IAAyLLdp~~~~~~s~sLd~La~~~~~~~~~~Lg~~~~l~~~~~~eel~GK~s~k~lfgK~k~kkq~s~~~~w~~~pL~~ 546 (1112)
.+++++.|. ++|+.|+++| ++. .+ .
T Consensus 173 ~la~~~~p~------~~L~~l~~~~--------gi~--------~~-------------~-------------------- 197 (235)
T 3v9w_A 173 ALAGLALGQ------TVLSKACQTA--------GMD--------FD-------------S-------------------- 197 (235)
T ss_dssp HHHHHHHSC------CSHHHHHHHH--------TCC--------CC-------------T--------------------
T ss_pred HHHHHHhCC------CCHHHHHHHc--------CCC--------CC-------------C--------------------
Confidence 999988763 7899999752 211 00 0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001267 547 LQREERELWISYSAFDSINTLKLYKSLKKKLLEM 580 (1112)
Q Consensus 547 ~~~~~~e~~l~YAA~DA~~tlrL~e~L~~kLee~ 580 (1112)
....+|..||.+|.+|+..|.++|++.
T Consensus 198 -------~~~H~Al~DA~~ta~l~~~l~~~l~~~ 224 (235)
T 3v9w_A 198 -------TQAHSALYDTERTAVLFCEIVNRWKRL 224 (235)
T ss_dssp -------TTTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------CCCcChHHHHHHHHHHHHHHHHHHHhc
Confidence 002468899999999999999999864
No 14
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=98.37 E-value=6.6e-07 Score=92.37 Aligned_cols=110 Identities=23% Similarity=0.237 Sum_probs=73.0
Q ss_pred cEEEEEeccCCCCcccCccccccceEEEEeeeCCCcccCCCceEEEEeCCC--------------------CChhhhHhh
Q 001267 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD--------------------GGGRDLLNE 427 (1112)
Q Consensus 368 ~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~--------------------~~~~~vL~~ 427 (1112)
.+|+||+||||+++..++|+++| ++.+..+. + + .....+|.+.. .+..+++..
T Consensus 13 ~~v~iD~ETTGl~~~~~~IieIg---~v~~~~g~-i-~--~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~ 85 (186)
T 2p1j_A 13 TFVVLDFETTGLDPQVDEIIEIG---AVKIQGGQ-I-V--DEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPE 85 (186)
T ss_dssp CEEEEEEEESCSCTTTCCEEEEE---EEEEETTE-E-E--EEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHH
T ss_pred CEEEEEEECCCCCCCCCeEEEEE---EEEEECCE-E-E--EEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHH
Confidence 58999999999998878887633 12221111 0 0 00112332210 123567788
Q ss_pred hhhhhcCCCceEEEeccHHHHHHHHH----cCCCC-CCccchHHHHHHhcCCCCCCCCCCCHHHHHhc
Q 001267 428 FAPFFEDPSIKKVWHNYSFDNHVLEN----YGLKV-SGFHADTMHMARLWDSSRRTEGGYSLEALTGD 490 (1112)
Q Consensus 428 Lk~~Led~~v~KV~HNaKfDl~vL~r----~GI~l-~~~vfDTmIAAyLLdp~~~~~~s~sLd~La~~ 490 (1112)
|..++.+. .+|+||+.||+.+|.+ +|+.. ...++||+.+++.+. ... +++|++|++.
T Consensus 86 ~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~-~~~---~~~L~~l~~~ 147 (186)
T 2p1j_A 86 FLGFLEDS--IIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL-KLR---SYSLDSVVEK 147 (186)
T ss_dssp HHHHSSSC--EEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT-CCS---CCSHHHHHHH
T ss_pred HHHHHCCC--EEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh-hcC---CCCHHHHHHH
Confidence 88888763 6899999999999864 57764 466899999888766 332 6999999974
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.33 E-value=2.3e-07 Score=100.24 Aligned_cols=120 Identities=14% Similarity=0.132 Sum_probs=73.4
Q ss_pred cEEEEEeccCCCCcccCccccccceEEEEeeeCC--------CcccC-----C--CceEEEEeCCC--------------
Q 001267 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGP--------EADFG-----N--GKSCIWVDLLD-------------- 418 (1112)
Q Consensus 368 ~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~--------~IqI~-----~--~~~~~~ID~~~-------------- 418 (1112)
.+|+||+||||+++..++||++| ++.+..+. +.+.. . .....+|.+..
T Consensus 13 ~~vv~D~ETTGl~~~~d~IiEIg---av~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~ 89 (242)
T 3mxm_B 13 TLIFLDLEATGLPSSRPEVTELC---LLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK 89 (242)
T ss_dssp EEEEEEEEESSCGGGCCCEEEEE---EEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCH
T ss_pred eEEEEEeecCCCCCCCCeeEEEE---EEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCH
Confidence 58999999999999889998733 33332220 00000 0 01123343311
Q ss_pred -----C---Chh-hhHhhhhhhhcCC--CceEEEecc-HHHHHHHHH----cCCCC--CC-ccchHHHHHHhcC----CC
Q 001267 419 -----G---GGR-DLLNEFAPFFEDP--SIKKVWHNY-SFDNHVLEN----YGLKV--SG-FHADTMHMARLWD----SS 475 (1112)
Q Consensus 419 -----~---~~~-~vL~~Lk~~Led~--~v~KV~HNa-KfDl~vL~r----~GI~l--~~-~vfDTmIAAyLLd----p~ 475 (1112)
. ... +++..|.+|+++. ....|+||+ .||+.+|.+ +|+.. .+ .++||+.+++.+. |+
T Consensus 90 ~~l~~~g~p~~~~ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~ 169 (242)
T 3mxm_B 90 AELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (242)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC-
T ss_pred HHHHhcCCCchhHHHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCcc
Confidence 1 122 6778888888772 246899996 999999864 68764 23 5789999888443 22
Q ss_pred C-CCCCCCCHHHHHhc
Q 001267 476 R-RTEGGYSLEALTGD 490 (1112)
Q Consensus 476 ~-~~~~s~sLd~La~~ 490 (1112)
. +..++++|++|+++
T Consensus 170 ~~~~~~~~~L~~l~~~ 185 (242)
T 3mxm_B 170 GNGSRKSYSLGSIYTR 185 (242)
T ss_dssp -----CCCSHHHHHHH
T ss_pred ccCCCCCcCHHHHHHH
Confidence 0 00126999999975
No 16
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=98.30 E-value=6e-06 Score=85.35 Aligned_cols=111 Identities=17% Similarity=0.218 Sum_probs=73.6
Q ss_pred cEEEEEeccCCCCc-----ccCccccccceEEEEeeeCCCcccCCCceEEEEeCCC--------------------CChh
Q 001267 368 LVHACDTEVAKIDV-----KQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD--------------------GGGR 422 (1112)
Q Consensus 368 ~~VAfDTETtGLd~-----~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~--------------------~~~~ 422 (1112)
.+|+||+||||+++ ..++|+.+| ++.+.. +..+. .....+|.+.. .+..
T Consensus 10 ~~vviD~ETTGl~~~~~~~~~~~Iieig---~v~~~~--~~~~~-~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~ 83 (194)
T 2gui_A 10 RQIVLDTETTGMNQIGAHYEGHKIIEIG---AVEVVN--RRLTG-NNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFA 83 (194)
T ss_dssp EEEEEEEEESCCCSSSSTTTTCCEEEEE---EEEEET--TEECS-CCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHH
T ss_pred CEEEEEeeCCCCCCcccCCCCCEEEEEE---EEEEEC--CeEec-cEEEEEECcCCcCCHHHHHhhCcCHHHHhCCCCHH
Confidence 58999999999998 457777632 222221 11111 11123443321 1134
Q ss_pred hhHhhhhhhhcCCCceEEEeccHHHHHHHHH----cCCCCC-----CccchHHHHHHhcCCCCCCCCCCCHHHHHhc
Q 001267 423 DLLNEFAPFFEDPSIKKVWHNYSFDNHVLEN----YGLKVS-----GFHADTMHMARLWDSSRRTEGGYSLEALTGD 490 (1112)
Q Consensus 423 ~vL~~Lk~~Led~~v~KV~HNaKfDl~vL~r----~GI~l~-----~~vfDTmIAAyLLdp~~~~~~s~sLd~La~~ 490 (1112)
+++..|..|+.+. ..|+||+.||+.+|.+ +|+..+ ..++||+..++.+.|.. +++|++|++.
T Consensus 84 ~v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~----~~~L~~l~~~ 154 (194)
T 2gui_A 84 EVADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGK----RNSLDALCAR 154 (194)
T ss_dssp HHHHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTS----CCSHHHHHHH
T ss_pred HHHHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCC----CCCHHHHHHH
Confidence 6777888888764 5799999999999864 577633 46899998888887764 4899999975
No 17
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.24 E-value=1e-06 Score=94.01 Aligned_cols=65 Identities=28% Similarity=0.378 Sum_probs=46.7
Q ss_pred hhHhhhhhhhcCC--CceEEEecc-HHHHHHHHH----cCCCCC--CccchHHHHHHhcC---------CCCCCCCCCCH
Q 001267 423 DLLNEFAPFFEDP--SIKKVWHNY-SFDNHVLEN----YGLKVS--GFHADTMHMARLWD---------SSRRTEGGYSL 484 (1112)
Q Consensus 423 ~vL~~Lk~~Led~--~v~KV~HNa-KfDl~vL~r----~GI~l~--~~vfDTmIAAyLLd---------p~~~~~~s~sL 484 (1112)
++...|..|++.- ....|+||+ .||+.+|.+ +|+.++ ..++||+.+++.+. |... +++|
T Consensus 98 ~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~---~~~L 174 (238)
T 1y97_A 98 AVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQ---GYSL 174 (238)
T ss_dssp HHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC-------------CCSH
T ss_pred HHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCC---CCCH
Confidence 4567788888762 146899999 999999863 687764 35899998887665 4433 6999
Q ss_pred HHHHhc
Q 001267 485 EALTGD 490 (1112)
Q Consensus 485 d~La~~ 490 (1112)
++|+++
T Consensus 175 ~~l~~~ 180 (238)
T 1y97_A 175 GSLFHR 180 (238)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 18
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=98.14 E-value=9.5e-06 Score=86.01 Aligned_cols=112 Identities=18% Similarity=0.074 Sum_probs=68.9
Q ss_pred cEEEEEeccCCCCcccCccccccceEEEEee---eCCCcccCCCceEEEEeCC---------------------C--CCh
Q 001267 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIY---SGPEADFGNGKSCIWVDLL---------------------D--GGG 421 (1112)
Q Consensus 368 ~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~---~~~~IqI~~~~~~~~ID~~---------------------~--~~~ 421 (1112)
.+|+||+||||+++..++||++| ++.+. .+. +.+.. ....+|.+. . .+.
T Consensus 30 ~~vviD~ETTGl~~~~~~IieIg---~v~~~~~~~g~-i~~~~-~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~ 104 (224)
T 2f96_A 30 LPVVVDVETGGFNSATDALLEIA---ATTVGMDEKGF-LFPEH-TYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQE 104 (224)
T ss_dssp EEEEEEEEESSSCTTTBCEEEEE---EEEEEECTTSC-EEEEE-EEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCH
T ss_pred cEEEEEeeCCCCCCCCCeeEEEE---EEEEEEcCCCc-ccccc-eEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCH
Confidence 58999999999998888887633 22222 111 10000 011233321 0 112
Q ss_pred hhhHhhhhhhhcC-------CCceEEEeccHHHHHHHHH----cCCCC----CCccchHHHHHHhcCCCCCCCCCCCHHH
Q 001267 422 RDLLNEFAPFFED-------PSIKKVWHNYSFDNHVLEN----YGLKV----SGFHADTMHMARLWDSSRRTEGGYSLEA 486 (1112)
Q Consensus 422 ~~vL~~Lk~~Led-------~~v~KV~HNaKfDl~vL~r----~GI~l----~~~vfDTmIAAyLLdp~~~~~~s~sLd~ 486 (1112)
.+++..|.+++.+ ....+|+||+.||+.+|.+ +|+.. ...++||+.+++.+.| .++|+.
T Consensus 105 ~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~------~~~L~~ 178 (224)
T 2f96_A 105 EAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG------QTVLAK 178 (224)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS------CCSHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC------CCCHHH
Confidence 3455666666641 2346899999999999864 57752 2458999998887655 378999
Q ss_pred HHhc
Q 001267 487 LTGD 490 (1112)
Q Consensus 487 La~~ 490 (1112)
|++.
T Consensus 179 l~~~ 182 (224)
T 2f96_A 179 ACQA 182 (224)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 19
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=97.96 E-value=6.1e-06 Score=92.48 Aligned_cols=120 Identities=14% Similarity=0.129 Sum_probs=72.2
Q ss_pred cEEEEEeccCCCCcccCccccccceEEEEeeeCC--------C--cccC---C--CceEEEEeCCC--------------
Q 001267 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGP--------E--ADFG---N--GKSCIWVDLLD-------------- 418 (1112)
Q Consensus 368 ~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~--------~--IqI~---~--~~~~~~ID~~~-------------- 418 (1112)
.+|+||+||||+++..++||++| ++.+..+. + ..++ . .....+|.+..
T Consensus 13 tfVv~DlETTGL~~~~d~IIEIg---aV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~ 89 (314)
T 3u3y_B 13 TLIFLDLEATGLPSSRPEVTELC---LLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK 89 (314)
T ss_dssp EEEEEEEEESSCGGGCCCEEEEE---EEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCH
T ss_pred CEEEEEEECCCCCCCCCeEEEEE---EEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCH
Confidence 58999999999999899998733 33332210 0 0000 0 01123444311
Q ss_pred -----C--C-h-hhhHhhhhhhhcCC--CceEEEec-cHHHHHHHHH----cCCCCC---CccchHHHHHH-h---cCCC
Q 001267 419 -----G--G-G-RDLLNEFAPFFEDP--SIKKVWHN-YSFDNHVLEN----YGLKVS---GFHADTMHMAR-L---WDSS 475 (1112)
Q Consensus 419 -----~--~-~-~~vL~~Lk~~Led~--~v~KV~HN-aKfDl~vL~r----~GI~l~---~~vfDTmIAAy-L---Ldp~ 475 (1112)
. + . .+++..|.+|+++. ....|+|| +.||+.+|.+ +|+... ..++||+.+.+ | +.|.
T Consensus 90 e~l~~aG~P~f~~ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~ 169 (314)
T 3u3y_B 90 AELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (314)
T ss_dssp HHHHHTTCCBSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC---
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCcc
Confidence 0 1 2 36677788888762 24689999 8999999864 687653 34789998665 3 3333
Q ss_pred C-CCCCCCCHHHHHhc
Q 001267 476 R-RTEGGYSLEALTGD 490 (1112)
Q Consensus 476 ~-~~~~s~sLd~La~~ 490 (1112)
. ...++|+|++|+++
T Consensus 170 ~~~~~~~~~L~~L~~~ 185 (314)
T 3u3y_B 170 GNGSRKSYSLGSIYTR 185 (314)
T ss_dssp ----CCCCSHHHHHHH
T ss_pred ccccCCCCCHHHHHHH
Confidence 1 00136999999986
No 20
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=97.84 E-value=4.9e-06 Score=86.51 Aligned_cols=116 Identities=9% Similarity=-0.052 Sum_probs=70.3
Q ss_pred cEEEEEeccCCCCc----ccCccccccceEEEEeeeCCCcccCCCceEEEEeCCC----------------------CCh
Q 001267 368 LVHACDTEVAKIDV----KQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD----------------------GGG 421 (1112)
Q Consensus 368 ~~VAfDTETtGLd~----~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~----------------------~~~ 421 (1112)
.+|+||+||||+++ ..++||++| ++.+....+..+. ....+|.+.. .+.
T Consensus 11 ~~vviD~ETTGl~~~~~~~~~~Iieig---av~~~~~~g~i~~--~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~ 85 (204)
T 1w0h_A 11 YICIIDFEATCEEGNPPEFVHEIIEFP---VVLLNTHTLEIED--TFQQYVRPEINTQLSDFCISLTGITQDQVDRADTF 85 (204)
T ss_dssp EEEECCCEECCCTTCCTTSCCCEEEEE---EEEEETTTCSEEE--EEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCH
T ss_pred EEEEEEEecCCcCCCCCCCCCcEEEEE---EEEEECCCCEEee--eeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCH
Confidence 58999999999996 567777632 2222100110000 0122333221 113
Q ss_pred hhhHhhhhhhhcCCC-----ceEEEeccHHHHH-HHHH----cCCCCCC---ccchHHHHHHhcCCCCCCCCCCCHHHHH
Q 001267 422 RDLLNEFAPFFEDPS-----IKKVWHNYSFDNH-VLEN----YGLKVSG---FHADTMHMARLWDSSRRTEGGYSLEALT 488 (1112)
Q Consensus 422 ~~vL~~Lk~~Led~~-----v~KV~HNaKfDl~-vL~r----~GI~l~~---~vfDTmIAAyLLdp~~~~~~s~sLd~La 488 (1112)
.+++..|..|+.+.. ...|+||+.||+. +|.+ +|+..+. .++||+-.++-+.+... .+++|++|+
T Consensus 86 ~~v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~--~~~~L~~l~ 163 (204)
T 1w0h_A 86 PQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR--SQTKLTIML 163 (204)
T ss_dssp HHHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCG--GGCSHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCC--ccchHHHHH
Confidence 467778888887643 3479999999996 8853 5776543 58999987765444311 148999999
Q ss_pred hc
Q 001267 489 GD 490 (1112)
Q Consensus 489 ~~ 490 (1112)
+.
T Consensus 164 ~~ 165 (204)
T 1w0h_A 164 EK 165 (204)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 21
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=97.77 E-value=2.5e-05 Score=81.33 Aligned_cols=103 Identities=13% Similarity=0.112 Sum_probs=65.9
Q ss_pred cEEEEEeccCCCCcccCccccccceEEEEeeeCCCcccCCCceEEEE-eCC-----------------C---------CC
Q 001267 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWV-DLL-----------------D---------GG 420 (1112)
Q Consensus 368 ~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~I-D~~-----------------~---------~~ 420 (1112)
.+|+||+||||+++..++|+++| ++ +..+....+.... .++| .+. + .+
T Consensus 10 ~~v~~D~ETTGL~p~~d~IiEIg---aV-~~d~~~~i~~~~~-~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~ 84 (186)
T 3tr8_A 10 NLIWLDLEMTGLDPERDRIIEIA---TI-VTNSHLDILAEGP-AFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVD 84 (186)
T ss_dssp CEEEEEEEESSSCTTTCCEEEEE---EE-EECTTCCEEEECC-CEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCC
T ss_pred cEEEEEEECCCCCCCCCceEEEE---EE-EEcCCeEEeeeeE-EEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCC
Confidence 69999999999999999998733 33 3333211111110 1223 110 1 12
Q ss_pred hhhhHhhhhhhhcC----CCceEEEeccHHHHHHHHH----cCCCCCCccch--HHH-HHHhcCCC
Q 001267 421 GRDLLNEFAPFFED----PSIKKVWHNYSFDNHVLEN----YGLKVSGFHAD--TMH-MARLWDSS 475 (1112)
Q Consensus 421 ~~~vL~~Lk~~Led----~~v~KV~HNaKfDl~vL~r----~GI~l~~~vfD--TmI-AAyLLdp~ 475 (1112)
..++++.|.+|+.. .....|+||+.||+.+|.+ .|..+...++| |+- +|+.+.|+
T Consensus 85 ~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P~ 150 (186)
T 3tr8_A 85 EVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAPQ 150 (186)
T ss_dssp HHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCcc
Confidence 35677788888831 2235899999999999975 35445667889 886 88877774
No 22
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.75 E-value=5.6e-05 Score=78.21 Aligned_cols=63 Identities=19% Similarity=-0.026 Sum_probs=42.4
Q ss_pred hhhhHhhhhhhhcCCCceEEEeccHHHHHHHHHcCCCCCCccchHHHHHHh----cCCCCCCCCCCCHHHHHhc
Q 001267 421 GRDLLNEFAPFFEDPSIKKVWHNYSFDNHVLENYGLKVSGFHADTMHMARL----WDSSRRTEGGYSLEALTGD 490 (1112)
Q Consensus 421 ~~~vL~~Lk~~Led~~v~KV~HNaKfDl~vL~r~GI~l~~~vfDTmIAAyL----Ldp~~~~~~s~sLd~La~~ 490 (1112)
..+++..|.+++.+ ..+|+||+.||+.+|.+.- ....++||+....+ ..|... .++|+.|+++
T Consensus 70 ~~~v~~~~~~~l~~--~~lV~hn~~fD~~~L~~~~--~~~~~idt~~~~~~~~~~~~p~~~---~~~L~~l~~~ 136 (189)
T 1wlj_A 70 FAVARLEILQLLKG--KLVVGHDLKHDFQALKEDM--SGYTIYDTSTDRLLWREAKLDHCR---RVSLRVLSER 136 (189)
T ss_dssp HHHHHHHHHHHHTT--SEEEESSHHHHHHHTTCCC--TTCEEEEGGGCHHHHHHHTC--------CCHHHHHHH
T ss_pred HHHHHHHHHHHHCC--CEEEECCcHHHHHHHHHhC--CCCceechHhhhhhhhcccCCCCC---CccHHHHHHH
Confidence 35677888899975 3689999999999997531 22357899865321 234323 6999999985
No 23
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=97.68 E-value=0.00011 Score=86.88 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=72.5
Q ss_pred cEEEEEeccCCCCcccCccccccceEEEEeeeCCCcccCCCceEEEEeCCC-------------C----------Chhhh
Q 001267 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD-------------G----------GGRDL 424 (1112)
Q Consensus 368 ~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~-------------~----------~~~~v 424 (1112)
.+|+||+||||+++..++||.+| ++.+ ...+..+.. ....||.+.. + ...++
T Consensus 10 ~~vv~DlETTGl~p~~d~IIEIg---aV~v-d~~g~ii~~-~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~ev 84 (482)
T 2qxf_A 10 TFLFHDYETFGTHPALDRPAQFA---AIRT-DSEFNVIGE-PEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAF 84 (482)
T ss_dssp EEEEEEEEESSSCTTTSCEEEEE---EEEE-CTTSCBCSC-CEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHH
T ss_pred CEEEEEEECCCCCCCCCeEEEEE---EEEE-ECCCeEEee-eeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHH
Confidence 69999999999999888888632 2222 212222221 1223443221 0 01456
Q ss_pred HhhhhhhhcCCCceEEEec-cHHHHHHHHH----cCCC-CC------CccchHHHHHHhcCCC----------CCCCCCC
Q 001267 425 LNEFAPFFEDPSIKKVWHN-YSFDNHVLEN----YGLK-VS------GFHADTMHMARLWDSS----------RRTEGGY 482 (1112)
Q Consensus 425 L~~Lk~~Led~~v~KV~HN-aKfDl~vL~r----~GI~-l~------~~vfDTmIAAyLLdp~----------~~~~~s~ 482 (1112)
+..|..++..+....|+|| +.||+.+|.+ +|+. +. +..+||+-.++.+.+. .....++
T Consensus 85 l~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~ 164 (482)
T 2qxf_A 85 AARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSF 164 (482)
T ss_dssp HHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCC
T ss_pred HHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCC
Confidence 6778888874456789999 8999999853 5665 22 4568998877765420 0011268
Q ss_pred CHHHHHhc
Q 001267 483 SLEALTGD 490 (1112)
Q Consensus 483 sLd~La~~ 490 (1112)
+|+.|+..
T Consensus 165 kL~~L~~~ 172 (482)
T 2qxf_A 165 RLEHLTKA 172 (482)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 89998864
No 24
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=97.48 E-value=0.00017 Score=73.47 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=60.2
Q ss_pred cEEEEEeccCCCCcccCccccccceEEEEeeeCCCcccCCCceEEEEeCC------------------C---------CC
Q 001267 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL------------------D---------GG 420 (1112)
Q Consensus 368 ~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~------------------~---------~~ 420 (1112)
.+|+||+||||+++..++|+++| .....+.+..+.. ....+|.+. + .+
T Consensus 6 ~~v~iD~ETTGl~~~~~~IieIg----~v~~~~~~~~~~~-~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~ 80 (180)
T 2igi_A 6 NLIWIDLEMTGLDPERDRIIEIA----TLVTDANLNILAE-GPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMG 80 (180)
T ss_dssp CEEEEEEEESSSCTTTCCEEEEE----EEEECTTCCEEEE-EEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCC
T ss_pred cEEEEEeeCCCCCCCCCceEEEE----EEEEcCCCcEecC-CcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCC
Confidence 58999999999999888887633 2122212111100 011233221 1 12
Q ss_pred hhhhHhhhhhhhcCC----CceEEEeccHHHHHHHHH----cCCCCCCccch--HHH-HHHhcCC
Q 001267 421 GRDLLNEFAPFFEDP----SIKKVWHNYSFDNHVLEN----YGLKVSGFHAD--TMH-MARLWDS 474 (1112)
Q Consensus 421 ~~~vL~~Lk~~Led~----~v~KV~HNaKfDl~vL~r----~GI~l~~~vfD--TmI-AAyLLdp 474 (1112)
..+++..|.+|+.+. ...+|+||+.||+.+|.+ +|..+...++| |+. +++.+.|
T Consensus 81 ~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~p 145 (180)
T 2igi_A 81 DREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKP 145 (180)
T ss_dssp HHHHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhCh
Confidence 346777888888751 246899999999999975 23334455678 763 5554444
No 25
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=97.39 E-value=0.00021 Score=79.28 Aligned_cols=115 Identities=10% Similarity=0.013 Sum_probs=68.8
Q ss_pred cEEEEEeccCCCC----cccCccccccceEEEEeeeCCCcccCCCceEEEEeCCC----------------------CCh
Q 001267 368 LVHACDTEVAKID----VKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD----------------------GGG 421 (1112)
Q Consensus 368 ~~VAfDTETtGLd----~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~----------------------~~~ 421 (1112)
.+|+||+||||++ +..++||++| ++.+..+.+ .+.. ....+|.+.. .+.
T Consensus 79 ~~vviD~ETTGl~~~~~~~~~~IIeIg---aV~v~~~~g-~i~~-~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~ 153 (299)
T 1zbh_A 79 YICIIDFEATCEEGNPPEFVHEIIEFP---VVLLNTHTL-EIED-TFQQYVRPEINTQLSDFCISLTGITQDQVDRADTF 153 (299)
T ss_dssp EEEEECCEECCCTTCCTTCCCCEEEEE---EEEEETTTC-CEEE-EEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCH
T ss_pred eEEEEEeecccCCCCCCCCCCceEEEE---EEEEECCCC-eEee-eeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCH
Confidence 5899999999997 4567777632 222211111 0000 0122333221 123
Q ss_pred hhhHhhhhhhhcCCC-----ceEEEeccHHHHH-HHHH----cCCCCCC---ccchHHHHHH-hcCCCCCCCCCCCHHHH
Q 001267 422 RDLLNEFAPFFEDPS-----IKKVWHNYSFDNH-VLEN----YGLKVSG---FHADTMHMAR-LWDSSRRTEGGYSLEAL 487 (1112)
Q Consensus 422 ~~vL~~Lk~~Led~~-----v~KV~HNaKfDl~-vL~r----~GI~l~~---~vfDTmIAAy-LLdp~~~~~~s~sLd~L 487 (1112)
.+++..|.+|+.+.. ...|+||+.||+. +|.+ +|+..+. .++||+.... +.+... +.++|++|
T Consensus 154 ~evl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~---~~~~L~~l 230 (299)
T 1zbh_A 154 PQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR---SQTKLTIM 230 (299)
T ss_dssp HHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG---GGCSHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCC---CCccHHHH
Confidence 567788888887641 3689999999999 9854 6776542 4789986544 332111 14899999
Q ss_pred Hhc
Q 001267 488 TGD 490 (1112)
Q Consensus 488 a~~ 490 (1112)
+..
T Consensus 231 ~~~ 233 (299)
T 1zbh_A 231 LEK 233 (299)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
No 26
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=97.11 E-value=0.00037 Score=73.96 Aligned_cols=110 Identities=12% Similarity=0.081 Sum_probs=65.6
Q ss_pred cEEEEEeccCCCCcccC--ccccccceEEEEeeeCCCcccCCCceEEEEeCCC----------------------CChhh
Q 001267 368 LVHACDTEVAKIDVKQE--TPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD----------------------GGGRD 423 (1112)
Q Consensus 368 ~~VAfDTETtGLd~~~d--~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~----------------------~~~~~ 423 (1112)
.+|+||+||||+++..+ +||++| ++.+..+.+ .+.. ....+|.+.. .+..+
T Consensus 32 ~~vviD~ETTGl~~~~d~~~IieIg---av~v~~~~~-~i~~-~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~ 106 (224)
T 2xri_A 32 YFLVLDFEATCDKPQIHPQEIIEFP---ILKLNGRTM-EIES-TFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQ 106 (224)
T ss_dssp EEEEECCEECCCC-CCSSCCEEEEE---EEEEETTTC-CEEE-EEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHH
T ss_pred eEEEEEEEcCCCCCCCCCcceEEEE---EEEEecCCc-EEee-eeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHH
Confidence 58999999999998754 777632 222221110 0100 0112333211 12456
Q ss_pred hHhhhhhhhcCCCceEEEecc--------HHHHHH-HH----HcCCCCC---Cccch---HHHHHHhcCCCCCCCCCCCH
Q 001267 424 LLNEFAPFFEDPSIKKVWHNY--------SFDNHV-LE----NYGLKVS---GFHAD---TMHMARLWDSSRRTEGGYSL 484 (1112)
Q Consensus 424 vL~~Lk~~Led~~v~KV~HNa--------KfDl~v-L~----r~GI~l~---~~vfD---TmIAAyLLdp~~~~~~s~sL 484 (1112)
++..|.+|+++.. .|+||+ .||+.+ |. ++|+..+ ..++| |+-.++-+.| .++|
T Consensus 107 v~~~f~~~l~~~~--lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p------~~~L 178 (224)
T 2xri_A 107 VLERVDEWMAKEG--LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWP------KNGL 178 (224)
T ss_dssp HHHHHHHHHHHTT--TTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCC------TTTH
T ss_pred HHHHHHHHHhhcc--cccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCC------CCCH
Confidence 7788888888653 689999 999996 63 3587754 25789 5555554433 3889
Q ss_pred HHHHhc
Q 001267 485 EALTGD 490 (1112)
Q Consensus 485 d~La~~ 490 (1112)
+.|++.
T Consensus 179 ~~l~~~ 184 (224)
T 2xri_A 179 LDMNKG 184 (224)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 27
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=96.98 E-value=0.0011 Score=68.93 Aligned_cols=81 Identities=7% Similarity=0.010 Sum_probs=50.2
Q ss_pred cEEEEEeccCCCCcccCccccccceEEEEeeeCCCcccCCCceEEEEeCC------------------C---------CC
Q 001267 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLL------------------D---------GG 420 (1112)
Q Consensus 368 ~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~------------------~---------~~ 420 (1112)
.+|+||+||||+++..++|+++| ++. ..+....+.. ....+|.+. + .+
T Consensus 10 ~~vviD~ETTGl~p~~d~IieIg---av~-~~~~~~~~~~-~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~ 84 (194)
T 2gbz_A 10 RLIWIDLEMTGLDTDRDSIIEIA---TIV-TDAQLNVLAE-GPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVT 84 (194)
T ss_dssp EEEEEEEEESCSCTTTCCEEEEE---EEE-EETTCCEEEE-CCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCC
T ss_pred CEEEEEeECCCCCCCCCccEEEE---EEE-EcCCcceecc-CceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCC
Confidence 68999999999999888888743 222 2222101111 011233211 0 11
Q ss_pred hhhhHhhhhhhhcCCC----ceEEEeccHHHHHHHHH
Q 001267 421 GRDLLNEFAPFFEDPS----IKKVWHNYSFDNHVLEN 453 (1112)
Q Consensus 421 ~~~vL~~Lk~~Led~~----v~KV~HNaKfDl~vL~r 453 (1112)
..+++..|.+|+++.. ..+|+||+.||+.+|.+
T Consensus 85 ~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~ 121 (194)
T 2gbz_A 85 HAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHR 121 (194)
T ss_dssp HHHHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHH
Confidence 3467778888887642 23899999999999975
No 28
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=96.85 E-value=0.00052 Score=77.99 Aligned_cols=116 Identities=9% Similarity=-0.041 Sum_probs=68.3
Q ss_pred cEEEEEeccCCCC----cccCccccccceEEEEeeeCCCcccCCCceEEEEeCCC-------------C---------Ch
Q 001267 368 LVHACDTEVAKID----VKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLD-------------G---------GG 421 (1112)
Q Consensus 368 ~~VAfDTETtGLd----~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~-------------~---------~~ 421 (1112)
.+|+||+||||++ +..++||.+| ++.+..+.+ .+.. ....+|.+.. + +.
T Consensus 129 ~~vviD~ETTGl~~~~~~~~deIIEIg---aV~vd~~~g-~i~~-~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~ 203 (349)
T 1zbu_A 129 YICIIDFEATCEEGNPPEFVHEIIEFP---VVLLNTHTL-EIED-TFQQYVRPEINTQLSDFCISLTGITQDQVDRADTF 203 (349)
T ss_dssp EEEECCCEECCCTTCCTTCCCCEEECC---EEEEETTTT-EEEE-EECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEH
T ss_pred eEEEEEEecCCCCCcCCCCCCeEEEEE---EEEEECCCc-eEeE-EEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCH
Confidence 5899999999995 4567887744 222211111 0000 0011232211 0 13
Q ss_pred hhhHhhhhhhhcCCC-----ceEEEeccHHHHH-HHHH----cCCCCCC---ccchHHHHHHhcCCCCCCCCCCCHHHHH
Q 001267 422 RDLLNEFAPFFEDPS-----IKKVWHNYSFDNH-VLEN----YGLKVSG---FHADTMHMARLWDSSRRTEGGYSLEALT 488 (1112)
Q Consensus 422 ~~vL~~Lk~~Led~~-----v~KV~HNaKfDl~-vL~r----~GI~l~~---~vfDTmIAAyLLdp~~~~~~s~sLd~La 488 (1112)
.+++..|..|+.+.. ...|+||+.||+. +|.+ +|+..+. .++||+....-+... . .+.++|+.|+
T Consensus 204 ~eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~-~-~~~~~L~~l~ 281 (349)
T 1zbu_A 204 PQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKV-P-RSQTKLTIML 281 (349)
T ss_dssp HHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTC-C-GGGGSHHHHH
T ss_pred HHHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcC-C-CCCCCHHHHH
Confidence 467778888887641 3689999999999 9854 6776542 478998665433211 1 0148999998
Q ss_pred hc
Q 001267 489 GD 490 (1112)
Q Consensus 489 ~~ 490 (1112)
..
T Consensus 282 ~~ 283 (349)
T 1zbu_A 282 EK 283 (349)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 29
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=96.81 E-value=0.00037 Score=77.83 Aligned_cols=68 Identities=3% Similarity=-0.069 Sum_probs=45.2
Q ss_pred hhhhHhhhhhhhcCCCceEEEecc------HHHH-HHHH----HcCCCCC---CccchHHHHHHhcCCCCC---CCCCCC
Q 001267 421 GRDLLNEFAPFFEDPSIKKVWHNY------SFDN-HVLE----NYGLKVS---GFHADTMHMARLWDSSRR---TEGGYS 483 (1112)
Q Consensus 421 ~~~vL~~Lk~~Led~~v~KV~HNa------KfDl-~vL~----r~GI~l~---~~vfDTmIAAyLLdp~~~---~~~s~s 483 (1112)
..+++..|.+|+++.. .|+||+ .||+ .+|. ++|+.++ ..++||+-.++.+.+... ..++++
T Consensus 95 ~~evl~~f~~~l~~~~--lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~ 172 (308)
T 3cg7_A 95 FDVVYEQFQQWLITLG--LEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTN 172 (308)
T ss_dssp HHHHHHHHHHHHHHHC--CCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSH
T ss_pred HHHHHHHHHHHHHhCC--cCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcC
Confidence 3567788888887653 478888 9999 5774 4687765 347899976664433211 012478
Q ss_pred HHHHHhc
Q 001267 484 LEALTGD 490 (1112)
Q Consensus 484 Ld~La~~ 490 (1112)
|++++..
T Consensus 173 L~~l~~~ 179 (308)
T 3cg7_A 173 IGKMNEY 179 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 30
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=94.08 E-value=1.5 Score=48.59 Aligned_cols=53 Identities=9% Similarity=0.009 Sum_probs=35.3
Q ss_pred cCCCceEEEeccHHHHHHHHH--cCCCCCC--------------ccchHHHHHHhcCCCCCCCCCCCHHHHHhc
Q 001267 433 EDPSIKKVWHNYSFDNHVLEN--YGLKVSG--------------FHADTMHMARLWDSSRRTEGGYSLEALTGD 490 (1112)
Q Consensus 433 ed~~v~KV~HNaKfDl~vL~r--~GI~l~~--------------~vfDTmIAAyLLdp~~~~~~s~sLd~La~~ 490 (1112)
-++.+.+|.|+..+|+..|.+ .|-.++. .++||..++..+..- .-||++||+.
T Consensus 147 l~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l-----~ggL~~lA~~ 215 (285)
T 4gmj_B 147 LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNL-----KGGLQEVAEQ 215 (285)
T ss_dssp SCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTC-----CSCHHHHHHH
T ss_pred hcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhcccc-----CChHHHHHHh
Confidence 356788999999999998865 2434432 367777777665432 2478887764
No 31
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=92.75 E-value=1.4 Score=50.34 Aligned_cols=107 Identities=20% Similarity=0.300 Sum_probs=65.7
Q ss_pred hhhHhhhhhhh--cCCCceEEEecc-HHHHHHHH----H-cCC---------------------------CCCCc-cchH
Q 001267 422 RDLLNEFAPFF--EDPSIKKVWHNY-SFDNHVLE----N-YGL---------------------------KVSGF-HADT 465 (1112)
Q Consensus 422 ~~vL~~Lk~~L--ed~~v~KV~HNa-KfDl~vL~----r-~GI---------------------------~l~~~-vfDT 465 (1112)
.+.+..|..++ .||+ .++|||. .||+.+|. . +|+ .+++. .+|+
T Consensus 192 ~~LL~~f~~~i~~~dPD-ii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~GR~~lD~ 270 (388)
T 1noy_A 192 RDMLMEYINLWEQKRPA-IFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILDY 270 (388)
T ss_dssp HHHHHHHHHHHHHSCCS-EEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETTSEECCH
T ss_pred HHHHHHHHHHHHHhCCc-EEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEcCeEEeEH
Confidence 34666777776 3566 4788996 79999873 2 342 11222 6899
Q ss_pred HHHHHhcCCC-CCCCCCCCHHHHHhccccccccchhhcccccCCCCcccccccchhhhhhcccccccCCCCCccccccch
Q 001267 466 MHMARLWDSS-RRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPV 544 (1112)
Q Consensus 466 mIAAyLLdp~-~~~~~s~sLd~La~~~~~~~~~~Lg~~~~l~~~~~~eel~GK~s~k~lfgK~k~kkq~s~~~~w~~~pL 544 (1112)
+.+.+-+.-. .. +++|++++.. +|+.. |... . . .+..+
T Consensus 271 ~~~~k~~~~~~l~---sysL~~Va~~-------~Lg~~--------------K~d~----~-----~--------~i~~~ 309 (388)
T 1noy_A 271 LDLYKKFAFTNLP---SFSLESVAQH-------ETKKG--------------KLPY----D-----G--------PINKL 309 (388)
T ss_dssp HHHHHHHTCCCCS---CCSHHHHHHH-------HHSCC--------------CCCC----S-----S--------CGGGH
T ss_pred HHHHhhcCcCccc---CCCHHHHHHH-------HhCCC--------------CCCc----H-----H--------HHHHH
Confidence 9888764322 33 6999999986 44432 1000 0 0 00111
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001267 545 EELQREERELWISYSAFDSINTLKLYKSL 573 (1112)
Q Consensus 545 ~~~~~~~~e~~l~YAA~DA~~tlrL~e~L 573 (1112)
+ .........|+..||..+++|+.++
T Consensus 310 --~-~~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 310 --R-ETNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp --H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --H-HhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1224677899999999999999874
No 32
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=92.67 E-value=0.92 Score=56.65 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=85.3
Q ss_pred cEEEEEeccCC---CCcccCccccccceEEEEeeeCCCc------ccCCCceEEEEeCCCCChhhhHhhhhhhhc--CCC
Q 001267 368 LVHACDTEVAK---IDVKQETPVDHGEVICFSIYSGPEA------DFGNGKSCIWVDLLDGGGRDLLNEFAPFFE--DPS 436 (1112)
Q Consensus 368 ~~VAfDTETtG---Ld~~~d~IVG~g~Ii~fsi~~~~~I------qI~~~~~~~~ID~~~~~~~~vL~~Lk~~Le--d~~ 436 (1112)
..++||+||++ .++..+.| +++++....+- ++.. .. +... .+..+.+..|..++. ||+
T Consensus 136 ~ilsfDIEt~~~~~p~~~~d~I------i~Is~~~~~~~~~~t~~~i~~-~~---v~~~-~~E~~LL~~f~~~i~~~dPD 204 (775)
T 1qht_A 136 TMLAFAIATLYHEGEEFGTGPI------LMISYADGSEARVITWKKIDL-PY---VDVV-STEKEMIKRFLRVVREKDPD 204 (775)
T ss_dssp CEEEEEEEECCCTTCCTTCSCE------EEEEEECSSCEEEEESSCCCC-SS---EEEC-SCHHHHHHHHHHHHHHHCCS
T ss_pred EEEEEEEEEcCCCCCCCCCCcE------EEEEEEecCCCeeEeeccccc-cc---eEEc-CCHHHHHHHHHHHHHhcCCC
Confidence 68999999998 44433433 55555432210 0000 00 0000 122345666666665 565
Q ss_pred ceEEEecc-HHHHHHHHH----cCCCCC----------------------C-ccchHHHHHHhcCCCCCCCCCCCHHHHH
Q 001267 437 IKKVWHNY-SFDNHVLEN----YGLKVS----------------------G-FHADTMHMARLWDSSRRTEGGYSLEALT 488 (1112)
Q Consensus 437 v~KV~HNa-KfDl~vL~r----~GI~l~----------------------~-~vfDTmIAAyLLdp~~~~~~s~sLd~La 488 (1112)
.+++||. .||+.+|.. +|+.+. + ..+|++..++-.. ... +++|++++
T Consensus 205 -iivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~-~l~---sysL~~Va 279 (775)
T 1qht_A 205 -VLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTI-NLP---TYTLEAVY 279 (775)
T ss_dssp -EEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHS-CCS---CCCHHHHH
T ss_pred -EEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhc-CcC---cCCHHHHH
Confidence 4799996 699999842 566531 2 2569887665432 223 69999999
Q ss_pred hccccccccchhhcccccCCCCcccccccchhhhhhcccccccCCCCCccccccchhHhhHhHHHHHHHHHHHHHHHHHH
Q 001267 489 GDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVEELQREERELWISYSAFDSINTLK 568 (1112)
Q Consensus 489 ~~~~~~~~~~Lg~~~~l~~~~~~eel~GK~s~k~lfgK~k~kkq~s~~~~w~~~pL~~~~~~~~e~~l~YAA~DA~~tlr 568 (1112)
.. +||..+ +++-+. .+..+| .-.+ .......|+..||..+++
T Consensus 280 ~~-------~Lg~~K--------~dv~~~-~i~~~~---------------~~~~-------~l~~l~~Y~~~Da~lt~~ 321 (775)
T 1qht_A 280 EA-------VFGKPK--------EKVYAE-EIAQAW---------------ESGE-------GLERVARYSMEDAKVTYE 321 (775)
T ss_dssp HH-------HHCCCC--------CCCCHH-HHHHHH---------------TTTC-------SHHHHHHHHHHHHHHHHH
T ss_pred HH-------HhCCCC--------CccCHH-HHHHHH---------------hcCc-------cHHHHHHHHHHHHHHHHH
Confidence 86 454320 111000 011111 1111 025678999999999999
Q ss_pred HHHHHHH
Q 001267 569 LYKSLKK 575 (1112)
Q Consensus 569 L~e~L~~ 575 (1112)
|+..+.+
T Consensus 322 L~~~~~~ 328 (775)
T 1qht_A 322 LGREFFP 328 (775)
T ss_dssp HHHHHHH
T ss_pred HHHhhhH
Confidence 9876543
No 33
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=91.17 E-value=2.3 Score=53.92 Aligned_cols=106 Identities=22% Similarity=0.390 Sum_probs=64.9
Q ss_pred hhHhhhhhhhc--CCCceEEEecc-HHHHHHHHH-----cCCC---------------------------CCCc-cchHH
Q 001267 423 DLLNEFAPFFE--DPSIKKVWHNY-SFDNHVLEN-----YGLK---------------------------VSGF-HADTM 466 (1112)
Q Consensus 423 ~vL~~Lk~~Le--d~~v~KV~HNa-KfDl~vL~r-----~GI~---------------------------l~~~-vfDTm 466 (1112)
+.+..|..++. ||++ ++|||. .||+..|.+ +|+. +++. .+|++
T Consensus 196 eLL~~F~~~I~~~DPDI-ItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~i~GRv~lDl~ 274 (903)
T 3qex_A 196 ELLMEYLNFWQQKTPVI-LTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLFGISVLDYI 274 (903)
T ss_dssp HHHHHHHHHHHHTCCSE-EECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEETTCEECCHH
T ss_pred HHHHHHHHHHHHhCCCE-EEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEEEeCeEEeeHH
Confidence 45666667665 6664 678996 699998732 3642 1222 67988
Q ss_pred HHHHhcC-CCCCCCCCCCHHHHHhccccccccchhhcccccCCCCcccccccchhhhhhcccccccCCCCCccccccchh
Q 001267 467 HMARLWD-SSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKISTIAPVE 545 (1112)
Q Consensus 467 IAAyLLd-p~~~~~~s~sLd~La~~~~~~~~~~Lg~~~~l~~~~~~eel~GK~s~k~lfgK~k~kkq~s~~~~w~~~pL~ 545 (1112)
-+.+-.. .... +++|+.+|.. +|+.. |..+ . . .+.
T Consensus 275 ~~~k~~~~~~l~---SYsLd~VA~~-------lLg~~--------------K~d~----~-------------~---~I~ 310 (903)
T 3qex_A 275 DLYKKFSFTNQP---SYSLDYISEF-------ELNVG--------------KLKY----D-------------G---PIS 310 (903)
T ss_dssp HHHHHHSCCCCS---CCCHHHHHHH-------HHCCC--------------CCCC----S-------------S---CGG
T ss_pred HHHHHhCccCcC---CCCHHHHHHH-------HcCCC--------------cccc----H-------------H---HHH
Confidence 7776532 2333 6999999986 44332 1000 0 0 011
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001267 546 ELQREERELWISYSAFDSINTLKLYKSL 573 (1112)
Q Consensus 546 ~~~~~~~e~~l~YAA~DA~~tlrL~e~L 573 (1112)
.+..........|+..||..+++|+.++
T Consensus 311 ~~~~~d~~~L~~Ycl~Da~Lt~~L~~Kl 338 (903)
T 3qex_A 311 KLRESNHQRYISYNIIAVYRVLQIDAKR 338 (903)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222234667899999999999999873
No 34
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=87.20 E-value=11 Score=47.38 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=27.6
Q ss_pred hhhhHhhhhhhhcCCCceEEEecc-HHHHHHHHH----cCCC
Q 001267 421 GRDLLNEFAPFFEDPSIKKVWHNY-SFDNHVLEN----YGLK 457 (1112)
Q Consensus 421 ~~~vL~~Lk~~Led~~v~KV~HNa-KfDl~vL~r----~GI~ 457 (1112)
..+.+..|..++.+.. .+++||. .||+.+|.. +|+.
T Consensus 257 E~~LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~ 297 (847)
T 1s5j_A 257 EYELLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYF 297 (847)
T ss_dssp HHHHHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCC
Confidence 3467888888888876 6899996 699999842 5663
No 35
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=86.82 E-value=19 Score=39.13 Aligned_cols=53 Identities=9% Similarity=0.008 Sum_probs=36.1
Q ss_pred cCCCceEEEeccHHHHHHHHH--cCCCCCC--------------ccchHHHHHHhcCCCCCCCCCCCHHHHHhc
Q 001267 433 EDPSIKKVWHNYSFDNHVLEN--YGLKVSG--------------FHADTMHMARLWDSSRRTEGGYSLEALTGD 490 (1112)
Q Consensus 433 ed~~v~KV~HNaKfDl~vL~r--~GI~l~~--------------~vfDTmIAAyLLdp~~~~~~s~sLd~La~~ 490 (1112)
-++.+.+|.|+..+|+..|.+ .|-+++. .++||..++..+.. . .-||..|++.
T Consensus 137 l~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~-l----~~gL~~la~~ 205 (252)
T 2d5r_A 137 LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKN-L----KGGLQEVAEQ 205 (252)
T ss_dssp SSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTT-C----CSSHHHHHHH
T ss_pred cCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcc-c----CCCHHHHHHH
Confidence 355689999999999998765 2444442 36788877776642 2 2468888763
No 36
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=83.48 E-value=33 Score=38.63 Aligned_cols=53 Identities=9% Similarity=0.072 Sum_probs=35.7
Q ss_pred cCCCceEEEeccHHHHHHHHH--cCCCCCC--------------ccchHHHHHHhcCCCCCCCCCCCHHHHHhc
Q 001267 433 EDPSIKKVWHNYSFDNHVLEN--YGLKVSG--------------FHADTMHMARLWDSSRRTEGGYSLEALTGD 490 (1112)
Q Consensus 433 ed~~v~KV~HNaKfDl~vL~r--~GI~l~~--------------~vfDTmIAAyLLdp~~~~~~s~sLd~La~~ 490 (1112)
-+..+.+|.++..+|+..|.+ .|-.++. .++||..++..+.. . .-||..|++.
T Consensus 158 l~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~iYD~K~l~~~~~~-l----~ggL~~lA~~ 226 (333)
T 2p51_A 158 LQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLN-N----SKGLQDIADD 226 (333)
T ss_dssp SCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSEEEHHHHHTTTTC-C----CCCHHHHHHH
T ss_pred cCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcc-c----cCCHHHHHHH
Confidence 345689999999999988755 2444442 26788877776642 2 2478877763
No 37
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=79.06 E-value=23 Score=44.35 Aligned_cols=65 Identities=25% Similarity=0.381 Sum_probs=40.6
Q ss_pred hhhHhhhhhhhc--CCCceEEEecc-HHHHHHHHH----cCCCC-------------------------CCc-cchHHHH
Q 001267 422 RDLLNEFAPFFE--DPSIKKVWHNY-SFDNHVLEN----YGLKV-------------------------SGF-HADTMHM 468 (1112)
Q Consensus 422 ~~vL~~Lk~~Le--d~~v~KV~HNa-KfDl~vL~r----~GI~l-------------------------~~~-vfDTmIA 468 (1112)
.+.+..|..++. ||+ ..++||. .||+..|.+ +|+.+ .+. .+|++-+
T Consensus 205 ~~lL~~f~~~i~~~dPD-ii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~ 283 (786)
T 3k59_A 205 PQLLEKLNAWFANYDPD-VIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEA 283 (786)
T ss_dssp HHHHHHHHHHHHHHCCS-EEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHH
T ss_pred HHHHHHHHHHHHHcCCC-EEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHH
Confidence 356666666665 565 4799996 599999842 44432 111 5677665
Q ss_pred HHhcCCCCCCCCCCCHHHHHhc
Q 001267 469 ARLWDSSRRTEGGYSLEALTGD 490 (1112)
Q Consensus 469 AyLLdp~~~~~~s~sLd~La~~ 490 (1112)
.+-...... +++|+++|..
T Consensus 284 lk~~~~~l~---SysL~~Va~~ 302 (786)
T 3k59_A 284 LKSAFWNFS---SFSLETVAQE 302 (786)
T ss_dssp HHHTTCCCS---CCSHHHHHHH
T ss_pred HHhccCCCC---CCCHHHHHHH
Confidence 553222333 6999999986
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=78.54 E-value=20 Score=46.14 Aligned_cols=133 Identities=16% Similarity=0.055 Sum_probs=86.9
Q ss_pred eEEEecccchhHHHHHHhcCchHHHHHHH-----cCCCchhHHHhhhccccccccccchhhhcccCCCCCCCCcccccCh
Q 001267 868 SLIVADYGQLELRILAHLANCKSMLDAFK-----AGGDFHSRTAMNMYPHIRNAVETGQVLLEWHGEDKPPVPLLKDAFA 942 (1112)
Q Consensus 868 ~lvsaDySQIELRIlAhlS~D~~Li~af~-----~G~DiH~~tA~~ifg~~~e~v~~~~~~~~w~~~~~p~v~~~~~vt~ 942 (1112)
.=|.-|-|-==+-.+|.|.+|....++.+ .-.|||+.+|..+-.....+...+..+++|.. ..
T Consensus 821 lPVhqDGSCNGLQHyAALgrD~~Ga~~VNL~psd~PqDvYs~Va~~V~~~~~~Da~~~~~~a~~l~------------~~ 888 (1134)
T 3spa_A 821 LPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGMRVAQVLE------------GF 888 (1134)
T ss_dssp CEEEECCSSHHHHHHHHHTTCHHHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHTT------------TC
T ss_pred CccccCCCCcHHHHHHHHccChhhHHHhCCCCCCCcccHHHHHHHHHHHHHHhhhhcChHHHHHhh------------CC
Confidence 46889999888899999999998888775 24699999998653321111111111233321 12
Q ss_pred HHHHhhHHHhhhhhhCCCcccchhhh--------CCCHH--------HHHHHHHHHHHhChhHH---HHHHHHHHHHHhC
Q 001267 943 SERRKAKMLNFSIAYGKTPVGLARDW--------KVSVE--------EAKKTVDLWYNERQEVL---TWQEARKKESRID 1003 (1112)
Q Consensus 943 ~~R~~AK~vnfGiiYG~g~~~La~~l--------gis~~--------EAk~~id~ff~~yP~Vk---~~~~~~~~~A~~~ 1003 (1112)
..|+..|...-=.+||.+.+|...++ .++.+ -|+.+.+...+.||+.+ .|+..+.......
T Consensus 889 I~RKvVKqtVMT~vYGvT~~Gar~QI~~~L~e~~~~~~~~~~~~a~Yla~~i~~si~e~f~~a~~im~WL~~~A~~i~~~ 968 (1134)
T 3spa_A 889 ITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHM 968 (1134)
T ss_dssp CCHHHHHHHHHHHHHCCSSSHHHHHHHHHHHTCTTSCTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhcccceEEeeecceehhHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999887654 13321 25677788888888765 4655555444333
Q ss_pred Ce-E--ecccCC
Q 001267 1004 NH-V--HTLLGR 1012 (1112)
Q Consensus 1004 Gy-V--~Tl~GR 1012 (1112)
+- | .|+.|-
T Consensus 969 ~~pV~WtTPlGl 980 (1134)
T 3spa_A 969 GSVVEWVTPLGV 980 (1134)
T ss_dssp TCCCEEECTTSC
T ss_pred CCCEEEECCCCC
Confidence 31 2 456654
No 39
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=77.29 E-value=21 Score=45.39 Aligned_cols=110 Identities=24% Similarity=0.305 Sum_probs=64.6
Q ss_pred hhhHhhhhhhhc--CCCceEEEecc-HHHHHHHHH----cCCCC----------------------------------CC
Q 001267 422 RDLLNEFAPFFE--DPSIKKVWHNY-SFDNHVLEN----YGLKV----------------------------------SG 460 (1112)
Q Consensus 422 ~~vL~~Lk~~Le--d~~v~KV~HNa-KfDl~vL~r----~GI~l----------------------------------~~ 460 (1112)
.+.+..|..++. ||++ +++||. .||+..|.+ +|+.. .+
T Consensus 314 ~eLL~~F~~~i~~~DPDI-IvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~G 392 (919)
T 3iay_A 314 EEMLSNWRNFIIKVDPDV-IIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDG 392 (919)
T ss_dssp HHHHHHHHHHHHHHCCSE-EEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTT
T ss_pred HHHHHHHHHHHHHhCCCE-EEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcC
Confidence 456667777664 5775 789997 699999842 45441 11
Q ss_pred -ccchHHHHHHhcCCCCCCCCCCCHHHHHhccccccccchhhcccccCCCCcccccccchhhhhhcccccccCCCCCccc
Q 001267 461 -FHADTMHMARLWDSSRRTEGGYSLEALTGDRKVMSEDKKAYQKDMSKGNTDEGFMGKISMKDIFGRRKLKKDGSAGKIS 539 (1112)
Q Consensus 461 -~vfDTmIAAyLLdp~~~~~~s~sLd~La~~~~~~~~~~Lg~~~~l~~~~~~eel~GK~s~k~lfgK~k~kkq~s~~~~w 539 (1112)
..+|++-..+-.. ... +++|++++.. +||..+ +++-+. .+.+++.
T Consensus 393 R~~lDl~~~~k~~~-~l~---sysL~~Va~~-------~Lg~~K--------~dv~~~-~I~~l~~-------------- 438 (919)
T 3iay_A 393 RLQLDLLQFIQREY-KLR---SYTLNAVSAH-------FLGEQK--------EDVHYS-IISDLQN-------------- 438 (919)
T ss_dssp CEEEEHHHHHHHHC-CCS---CCCHHHHHHH-------HHCCC--------------C-CHHHHHT--------------
T ss_pred eEEEEhHHHHHhhc-CCC---CCCHHHHHHH-------hcccCC--------CCCCHH-HHHHHHh--------------
Confidence 2568887765322 222 6999999986 444320 011000 0111111
Q ss_pred cccchhHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001267 540 TIAPVEELQREERELWISYSAFDSINTLKLYKSL 573 (1112)
Q Consensus 540 ~~~pL~~~~~~~~e~~l~YAA~DA~~tlrL~e~L 573 (1112)
-.| ........|+..||..+++|+.++
T Consensus 439 -~~~------~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 439 -GDS------ETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp -SCH------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -cCh------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 113567899999999999999875
No 40
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Probab=69.43 E-value=44 Score=42.32 Aligned_cols=122 Identities=13% Similarity=0.104 Sum_probs=77.1
Q ss_pred eEEEecccchhHHHHHHhcCchHHHHHHH-----cCCCchhHHHhhhccccccccccch---------------------
Q 001267 868 SLIVADYGQLELRILAHLANCKSMLDAFK-----AGGDFHSRTAMNMYPHIRNAVETGQ--------------------- 921 (1112)
Q Consensus 868 ~lvsaDySQIELRIlAhlS~D~~Li~af~-----~G~DiH~~tA~~ifg~~~e~v~~~~--------------------- 921 (1112)
.-|..|-|.==|-.+|.|.+|.....+.+ .-.|||+.+|..+-.....+...+.
T Consensus 532 lPVhqDgSCnGLQHyAALgrD~~ga~~VNL~psd~PqDvYs~Va~~v~~~~~~da~~g~~~~~~~~~d~~~g~i~e~~~~ 611 (883)
T 1msw_D 532 LPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKL 611 (883)
T ss_dssp CCEEEECSCHHHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCC
T ss_pred cccccCCCCcHHHHHHHHhcChhhhhHhCCCCCCCCcchHHHHHHHHHHHHHHHHhcccccccccccccccccchhhccc
Confidence 34667888777888999999988777664 2479999999765331111110000
Q ss_pred ----hhhcccCCCCCCCCcccccChHHHHhhHHHhhhhhhCCCcccchhhhC--C-------------------CHHHHH
Q 001267 922 ----VLLEWHGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLARDWK--V-------------------SVEEAK 976 (1112)
Q Consensus 922 ----~~~~w~~~~~p~v~~~~~vt~~~R~~AK~vnfGiiYG~g~~~La~~lg--i-------------------s~~EAk 976 (1112)
+.+.|.. ....|+..|...-=.+||.+..|...++. + +.--|+
T Consensus 612 ~~~~l~~~~l~------------~~i~RKvvKqtVMT~vYGvT~~Ga~~qI~~~l~~~~~~~~~~~~~~~~~~~a~yla~ 679 (883)
T 1msw_D 612 GTKALAGQWLA------------YGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAK 679 (883)
T ss_dssp CHHHHHHHHHT------------TCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHH
T ss_pred chhHHHHHHHh------------cCCCHHHhccceeeeeeCCcchhhHHHHHHHHhhhhccccccccccchhHHHHHHHH
Confidence 0011110 12379999999999999999999765542 0 001257
Q ss_pred HHHHHHHHhChhHH---HHHHHHHHHHH
Q 001267 977 KTVDLWYNERQEVL---TWQEARKKESR 1001 (1112)
Q Consensus 977 ~~id~ff~~yP~Vk---~~~~~~~~~A~ 1001 (1112)
.+.+...+.||+.+ .|+..+.....
T Consensus 680 ~i~~ai~~~f~~a~~im~wL~~~a~~i~ 707 (883)
T 1msw_D 680 LIWESVSVTVVAAVEAMNWLKSAAKLLA 707 (883)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888899755 56655554443
No 41
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=53.66 E-value=13 Score=44.82 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=37.8
Q ss_pred cEEEEEeccCCCCcccCccccccceEEEEeeeCCCcccCCCceEEEEeCCCCChhhhHhhhhhhhcCCCceEEEeccHHH
Q 001267 368 LVHACDTEVAKIDVKQETPVDHGEVICFSIYSGPEADFGNGKSCIWVDLLDGGGRDLLNEFAPFFEDPSIKKVWHNYSFD 447 (1112)
Q Consensus 368 ~~VAfDTETtGLd~~~d~IVG~g~Ii~fsi~~~~~IqI~~~~~~~~ID~~~~~~~~vL~~Lk~~Led~~v~KV~HNaKfD 447 (1112)
..++||+||+. +.....+ .++++..+.. ...+|.+. .+..|..++.+.+...++||++||
T Consensus 7 ~i~~~D~Et~~-d~~~~~~------~~i~~~~~~~------~~~~~~~~-------~l~~fi~~~~~~~~~i~~hNl~FD 66 (575)
T 2py5_A 7 KMYSCAFETTT-KVEDCRV------WAYGYMNIED------HSEYKIGN-------SLDEFMAWVLKVQADLYFHNLKFA 66 (575)
T ss_dssp CEEEEEEEECC-BTTBCCE------EEEEEEESSC------TTCEEEES-------CHHHHHHHHHHHCCEEEETTHHHH
T ss_pred eEEEEEEEeec-CCCCCce------EEEEEEeCCc------eEEEEech-------hHHHHHHHHHHcCCEEEEEChhhh
Confidence 58999999963 3333322 4555544321 12344432 133344444444455889999999
Q ss_pred HHHHHH
Q 001267 448 NHVLEN 453 (1112)
Q Consensus 448 l~vL~r 453 (1112)
..+|.+
T Consensus 67 ~~~l~~ 72 (575)
T 2py5_A 67 GAFIIN 72 (575)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999853
No 42
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=43.26 E-value=56 Score=42.77 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001267 553 ELWISYSAFDSINTLKLYKSLKK 575 (1112)
Q Consensus 553 e~~l~YAA~DA~~tlrL~e~L~~ 575 (1112)
.....|+..|+..+++|+.++..
T Consensus 530 ~~L~~Ycl~Da~lt~~L~~kl~~ 552 (1193)
T 2gv9_A 530 GVIGEYCIQDSLLVGQLFFKFLP 552 (1193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999987743
No 43
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=28.65 E-value=65 Score=33.43 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=20.8
Q ss_pred hhhHhhhhhhhcC---CCceEEEeccHHHHHHHHH
Q 001267 422 RDLLNEFAPFFED---PSIKKVWHNYSFDNHVLEN 453 (1112)
Q Consensus 422 ~~vL~~Lk~~Led---~~v~KV~HNaKfDl~vL~r 453 (1112)
.++...|..||.. +.+.+++++..||..+|..
T Consensus 89 ~~i~~~L~~FL~~~~~~~~eLwa~~~~yD~~~L~q 123 (190)
T 4hec_A 89 QQIRLDLEEFLRIDGTDSIELWAWVGAYDHVALCQ 123 (190)
T ss_dssp HHHHHHHHHHTTTTSSCEEEEEESSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecccccHHHHHH
Confidence 3455667777753 2345677778888877765
No 44
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=28.16 E-value=1.4e+02 Score=38.50 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001267 552 RELWISYSAFDSINTLKLYKSLKKKLLE 579 (1112)
Q Consensus 552 ~e~~l~YAA~DA~~tlrL~e~L~~kLee 579 (1112)
......|||.||.+|+++|.++.+...+
T Consensus 322 fq~Lm~YCA~DV~aTh~V~~kl~P~F~e 349 (1172)
T 3ikm_A 322 FQDLMQYCAQDVWATHEVFQQQLPLFLE 349 (1172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999887654
Done!