Query 001268
Match_columns 1112
No_of_seqs 251 out of 928
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 20:19:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02784 alpha-amylase 100.0 6.7E-52 1.5E-56 498.9 25.7 293 13-379 80-397 (894)
2 PLN02784 alpha-amylase 99.9 1.3E-25 2.9E-30 272.3 13.7 129 247-376 69-210 (894)
3 PRK06464 phosphoenolpyruvate s 99.7 1.2E-17 2.6E-22 207.5 14.0 136 970-1108 4-175 (795)
4 TIGR01418 PEP_synth phosphoeno 99.7 4.1E-17 8.9E-22 202.8 13.6 134 972-1108 1-172 (782)
5 PRK06241 phosphoenolpyruvate s 99.7 1.1E-16 2.4E-21 201.3 14.0 132 971-1108 3-166 (871)
6 PF01326 PPDK_N: Pyruvate phos 99.6 1.5E-16 3.3E-21 180.0 -4.4 122 981-1108 3-154 (327)
7 PRK05878 pyruvate phosphate di 99.5 4.5E-14 9.8E-19 168.4 8.2 136 968-1107 4-183 (530)
8 COG0574 PpsA Phosphoenolpyruva 99.4 7.3E-13 1.6E-17 164.6 10.4 128 972-1105 4-167 (740)
9 TIGR01828 pyru_phos_dikin pyru 99.4 1E-12 2.2E-17 164.5 10.5 133 971-1107 2-223 (856)
10 PRK09279 pyruvate phosphate di 98.8 9.6E-09 2.1E-13 129.2 9.3 50 971-1023 4-60 (879)
11 PLN02316 synthase/transferase 96.9 0.02 4.3E-07 74.4 17.8 93 20-126 140-239 (1036)
12 PRK05849 hypothetical protein; 96.9 0.0069 1.5E-07 76.7 12.9 176 756-938 571-781 (783)
13 PRK06241 phosphoenolpyruvate s 96.8 0.041 8.8E-07 71.2 18.5 178 753-939 649-868 (871)
14 PRK08296 hypothetical protein; 96.5 0.0038 8.3E-08 76.9 6.3 97 836-939 503-601 (603)
15 PF00391 PEP-utilizers: PEP-ut 95.7 0.011 2.5E-07 54.4 3.9 68 861-933 8-78 (80)
16 PF03423 CBM_25: Carbohydrate 95.1 0.11 2.5E-06 48.8 8.7 65 288-373 20-86 (87)
17 PRK05865 hypothetical protein; 95.0 0.046 9.9E-07 70.2 7.5 96 837-941 740-838 (854)
18 PLN02316 synthase/transferase 94.8 0.63 1.4E-05 61.1 16.9 89 30-126 325-420 (1036)
19 PRK09279 pyruvate phosphate di 94.7 0.027 5.9E-07 72.3 4.5 105 836-943 398-513 (879)
20 PRK06354 pyruvate kinase; Prov 94.6 0.038 8.3E-07 68.3 5.2 96 836-938 486-583 (590)
21 TIGR01418 PEP_synth phosphoeno 94.5 0.044 9.6E-07 70.0 5.6 99 836-941 358-461 (782)
22 PRK05878 pyruvate phosphate di 94.5 0.06 1.3E-06 65.9 6.3 101 835-942 353-456 (530)
23 PRK06464 phosphoenolpyruvate s 94.4 0.036 7.7E-07 70.9 4.3 100 836-942 360-464 (795)
24 TIGR01828 pyru_phos_dikin pyru 94.2 0.046 9.9E-07 70.3 4.9 105 836-943 392-507 (856)
25 PRK11377 dihydroxyacetone kina 92.6 0.19 4.1E-06 60.9 6.2 75 861-939 394-471 (473)
26 PF03423 CBM_25: Carbohydrate 92.5 0.33 7.1E-06 45.8 6.4 67 46-124 18-86 (87)
27 PRK05849 hypothetical protein; 92.2 0.074 1.6E-06 67.7 2.2 35 981-1016 5-39 (783)
28 COG3848 Phosphohistidine swive 91.2 0.53 1.1E-05 45.8 6.2 97 836-939 6-104 (111)
29 PRK11177 phosphoenolpyruvate-p 89.9 0.37 8.1E-06 59.8 5.1 79 861-943 152-233 (575)
30 TIGR01417 PTS_I_fam phosphoeno 88.4 0.54 1.2E-05 58.3 5.0 78 861-943 151-232 (565)
31 PRK11061 fused phosphoenolpyru 86.9 0.68 1.5E-05 59.2 4.8 77 861-943 319-399 (748)
32 COG1080 PtsA Phosphoenolpyruva 85.7 1.2 2.7E-05 54.6 5.8 73 861-943 153-234 (574)
33 PRK03955 hypothetical protein; 80.5 6.5 0.00014 40.2 7.7 94 836-939 6-128 (131)
34 COG3605 PtsP Signal transducti 79.8 2.2 4.9E-05 52.4 4.9 80 858-942 323-406 (756)
35 PF11154 DUF2934: Protein of u 75.5 2.9 6.3E-05 34.2 2.9 35 138-175 5-39 (40)
36 COG0574 PpsA Phosphoenolpyruva 62.0 3.5 7.6E-05 52.9 1.2 110 796-914 305-416 (740)
37 COG5424 Pyrroloquinoline quino 30.9 56 0.0012 36.6 4.0 25 554-579 92-117 (242)
38 PF04190 DUF410: Protein of un 23.5 2.4E+02 0.0053 31.8 7.5 87 466-556 53-158 (260)
39 KOG2435 Uncharacterized conser 22.9 3.3E+02 0.0071 31.2 8.1 89 264-374 202-295 (323)
40 KOG3021 Predicted kinase [Gene 20.2 84 0.0018 35.4 2.9 45 460-506 94-138 (313)
No 1
>PLN02784 alpha-amylase
Probab=100.00 E-value=6.7e-52 Score=498.92 Aligned_cols=293 Identities=25% Similarity=0.478 Sum_probs=245.8
Q ss_pred ceeeeecce----eEEEeecCCCCCceEEEEEEEeecCCceEEEeeeeecCC--CccccCCC--CC------CCcccccc
Q 001268 13 HNFELVEGM----KLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGN--TNWFIPAE--HP------KQGALQTP 78 (1112)
Q Consensus 13 ~~~~~~~~~----~~~~~~~~~~~g~~~~v~~~~~~~~~~l~lHWGv~~~~~--~~W~~P~~--~P------k~~a~~Tp 78 (1112)
..|.|.... ++-|-|. ..++.+.+|.+.+. .+++|+|||||++.++ +||.+||+ +| |++|||||
T Consensus 80 k~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~-~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~~A~eT~ 157 (894)
T PLN02784 80 ETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCS-IPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKDYAIETP 157 (894)
T ss_pred eeeeecccceecceeEEEEE-ccCCCcEEEEEEec-CCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecCeEEecc
Confidence 367765554 2334444 56788999999866 7788999999999885 79999999 44 89999999
Q ss_pred cccc--cc-ceEEEEEec-CCcceeEEEEEEeccccchhcccCCcccccCCCCCCCCCCCCCchhhHhhhhhhhcccCCC
Q 001268 79 FVKS--GE-IYLVTIELR-DPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRGR 154 (1112)
Q Consensus 79 f~~~--g~-~~~v~i~~~-d~~i~ai~Fvl~de~~~~W~~~~g~nf~v~l~~~~~~~~~~~~p~~li~~~ay~~WE~~g~ 154 (1112)
|+++ |+ .+.|+|||+ ++++.||+||||+|++|+||++||+||+|+||+......+. +...+.+-.|..
T Consensus 158 f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~~~~~~~-----~~~~~~~~~~~~--- 229 (894)
T PLN02784 158 LKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDLPDGGNN-----VGAKKGFGIWPG--- 229 (894)
T ss_pred ccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccccccccce-----eehhhhcCcCcC---
Confidence 9996 44 788888988 89999999999999999999999999999999977666652 444788889999
Q ss_pred CCCChhhhhHHHHHHHHHHHHHhhcCCChHHHHhhhcCCCCCCCCCChhhhhcCCCC--CCCCcCCHHHHHhhhcc--Cc
Q 001268 155 PNNSPQQQQKDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKEQIRYGVPS--YPCRRHDVEKWLQKNYK--GH 230 (1112)
Q Consensus 155 p~~~~e~~~~ey~~a~~~l~~~l~~G~sl~~l~~~l~~~~~~~~~~~~d~~~~~~~~--~~~~~~d~~~~~~k~~~--~~ 230 (1112)
.|.+|+..+.++++. .+++|-..+++. .+.++. |++||+ |+
T Consensus 230 ---------------------------~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 274 (894)
T PLN02784 230 ---------------------------ALGQLSNILLKDEGS---PSKEQDKSSSELDSAAERKG-----LKGFYEEMPI 274 (894)
T ss_pred ---------------------------ccccccchhccCCCC---CcccCCCccccccccccccc-----chhhhhccce
Confidence 899999999998752 233333233332 223333 788999 88
Q ss_pred cccCCCCchhHHHHHHhhcCCCcceeeeeeecceEEEEEEEee--CCceEEEEEecCCCCeEEEeeeecCCCCcccCCCC
Q 001268 231 VKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKII--SSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPP 308 (1112)
Q Consensus 231 ~~~~~~p~~~~~~~~~~~~~~~~v~~~k~f~~~~ei~V~v~~~--~g~~~V~v~td~~~~lvLHWGv~~~~~~eW~~PP~ 308 (1112)
.|+ +.++ +.|.|+|+++ .+|++|+|+||+|++|||||||||++++||++||+
T Consensus 275 ~k~--~~~~------------------------~~~~v~v~~~~~~~k~~v~v~td~~~~vvlHWgV~k~~~~eW~~Pp~ 328 (894)
T PLN02784 275 VKR--VAVD------------------------NSVTVTVRKCPETAKNLVYLETDLPGDVVVHWGVCKDGAKTWEIPPE 328 (894)
T ss_pred eeE--EEec------------------------ceEEEEEecCCCCCceEEEEEcCCCCCEEEEeEeccCCCCcccCCCC
Confidence 777 4455 8899999985 58999999999999999999999998999999999
Q ss_pred CCCCCccccccceeeeeeecccCCCceeeEEEEEccCCceeEEEEEEec-CCcccccCCcceEEecCCCCCc
Q 001268 309 DMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWS-GGSWIKNNGENFFVGLHPMDPK 379 (1112)
Q Consensus 309 ~~~P~~S~~~~~A~eT~f~~~~~~~~~~~~lei~l~~~~~~gi~FVLk~-~~~W~k~~G~DF~V~l~~~~~~ 379 (1112)
+++|+||++++|||||||++.+++.++++.++| ++.|.||+||||+ +|+||||+|+||||||+..++.
T Consensus 329 ~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~l---d~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl~~~~~~ 397 (894)
T PLN02784 329 PHPPETSLFKNKALQTMLQQKDDGNGSSGLFSL---DGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSSSL 397 (894)
T ss_pred CCCCCcceecccccccccccccCCCcceEEEec---CCCeeEEEEEEECCCCchhhcCCccEEEeCCchhcc
Confidence 999999999999999999999998888988777 7899999999999 7999999999999999987544
No 2
>PLN02784 alpha-amylase
Probab=99.92 E-value=1.3e-25 Score=272.31 Aligned_cols=129 Identities=25% Similarity=0.490 Sum_probs=117.3
Q ss_pred hhcCCCcceeeeeeecc-eE-----EEEEE-EeeCCceEEEEEecCCCCeEEEeeeecCC--CCcccCCCCCCCCCcccc
Q 001268 247 NSLGADNVISRQSYHMD-HE-----IVVLS-KIISSDYHILVAVNMKGAAILHWGISKCS--PGEWLSPPPDMLPEKSKM 317 (1112)
Q Consensus 247 ~~~~~~~v~~~k~f~~~-~e-----i~V~v-~~~~g~~~V~v~td~~~~lvLHWGv~~~~--~~eW~~PP~~~~P~~S~~ 317 (1112)
++.+.++|+++|+|+++ .| |.|++ ++++|+++|+|+||+|++|||||||++++ ++||.+||++++||||+.
T Consensus 69 ~~~~~~~v~~kk~F~v~~~e~ve~~~~v~l~~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~ 148 (894)
T PLN02784 69 ETAQSDDVFFKETFPVKRTEKVEGKIYVRLEEKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIA 148 (894)
T ss_pred eccccccceeeeeeeecccceecceeEEEEEccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCcccCCCCcEE
Confidence 45568999999999999 66 44444 77899999999999999999999999987 699999999999999999
Q ss_pred c-cceeeeeeecccCCCceeeE-EEEEccCCceeEEEEEEec--CCcccccCCcceEEecCCC
Q 001268 318 V-AGACQTYFTDIATARGSFQM-VDVNLQKRKFVGIQFVIWS--GGSWIKNNGENFFVGLHPM 376 (1112)
Q Consensus 318 ~-~~A~eT~f~~~~~~~~~~~~-lei~l~~~~~~gi~FVLk~--~~~W~k~~G~DF~V~l~~~ 376 (1112)
+ ++||||||++.+.++..+++ |+|+++ +.|+||+||||+ +|+||||||+||||||+..
T Consensus 149 ~~~~A~eT~f~~~s~~~~~~~v~iel~l~-~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~ 210 (894)
T PLN02784 149 IKDYAIETPLKKSSEGDSFYEVTIDLDPN-SSIAAINFVLKDEETGAWYQHKGRDFKVPLVDD 210 (894)
T ss_pred ecCeEEeccccccccCCcceeEEEEEeeC-CceeeEEEEEEeCCCCchhhcCCccEEEecccc
Confidence 8 89999999999888888886 899885 899999999999 6999999999999999875
No 3
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.73 E-value=1.2e-17 Score=207.53 Aligned_cols=136 Identities=16% Similarity=0.226 Sum_probs=116.1
Q ss_pred CcceeeCCC---cCCCCCCHHhhHHHHhHhhCC-CCCCCCCceeeCHHHHHHHHHhcccchHHHHHHHHHhhcCCCCHHH
Q 001268 970 GKYAVSVED---FTPDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSK 1045 (1112)
Q Consensus 970 g~~Vl~l~e---~d~~lVGgKAANLGeL~~~lp-ag~~VP~GFaIPfgAye~fL~~~~n~~L~~~I~~L~a~ld~~D~~~ 1045 (1112)
.++++++++ .+...||||++|||+|++.++ .||+||+||||||++|+.||+.+ ++.+.|.++++.++.+|.++
T Consensus 4 ~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~d~~~ 80 (795)
T PRK06464 4 MKYVLWFEELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQT---GLNEKIYELLDGLDVDDVDA 80 (795)
T ss_pred CceeeehhHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhC---ChHHHHHHHHhhcCcCCHHH
Confidence 467888764 668889999999999998655 59999999999999999999999 78889988888888888766
Q ss_pred H----HHHHHHHHcCCCCHHHHHHHHHHHHhcCC-----C-------CCCC----------------ccHHHHHHHHhhh
Q 001268 1046 L----QEIQEAVLQMSAPLSLIYELKNKMRSSGM-----P-------WPGD----------------EGWNLAWRSIKKV 1093 (1112)
Q Consensus 1046 L----~~IRelI~~~~lP~eL~~eL~~A~~~lg~-----~-------~ped----------------~g~e~ll~AIK~V 1093 (1112)
| ++||++|++.++|+++.++|.++|..++. + ..|| .+.+++++|||+|
T Consensus 81 l~~~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~l~~AIk~v 160 (795)
T PRK06464 81 LAKAGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSATAEDLPDASFAGQQETFLNVRGIDDVLEAVKEC 160 (795)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCCcccCCCCCCCCCccceecCCCCHHHHHHHHHHH
Confidence 5 89999999999999999999999987531 1 1122 1479999999999
Q ss_pred cccCCchhHHhcchh
Q 001268 1094 LKFKSAHFSYHNLDD 1108 (1112)
Q Consensus 1094 WASlyneRAi~s~~~ 1108 (1112)
|||+||+||+.-|+.
T Consensus 161 ~aS~~~~rA~~YR~~ 175 (795)
T PRK06464 161 FASLFTDRAISYRVH 175 (795)
T ss_pred HHccCCHHHHHHHHH
Confidence 999999999987654
No 4
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.71 E-value=4.1e-17 Score=202.83 Aligned_cols=134 Identities=19% Similarity=0.218 Sum_probs=111.5
Q ss_pred ceeeCCC---cCCCCCCHHhhHHHHhHhhCC-CCCCCCCceeeCHHHHHHHHHhcccchHHHHHHHHHhhcCCCCHHHH-
Q 001268 972 YAVSVED---FTPDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL- 1046 (1112)
Q Consensus 972 ~Vl~l~e---~d~~lVGgKAANLGeL~~~lp-ag~~VP~GFaIPfgAye~fL~~~~n~~L~~~I~~L~a~ld~~D~~~L- 1046 (1112)
|++||++ .+...||||++|||+|++.++ .||+||+||||||.+|++||+.+ ++.+.|.++++.++.+|.+.|
T Consensus 1 ~~~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~~VP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~~~~~l~ 77 (782)
T TIGR01418 1 LILWLEEVRKDDVPLVGGKNASLGEMIQNLSPAGVPVPPGFVVTAEAYRYFLEEN---GIAQKIRDLLEELDVEDSEALA 77 (782)
T ss_pred CeeehhhcCcccccccChHHHHHHHHHhhhhhcCCCCCCeEEEcHHHHHHHHHhC---ChHHHHHHHHHhcCcCCHHHHH
Confidence 4566653 567889999999999997332 49999999999999999999998 788888888887887786655
Q ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHHHhcCC-------C-------CCCC----------------ccHHHHHHHHhhh
Q 001268 1047 ---QEIQEAVLQMSAPLSLIYELKNKMRSSGM-------P-------WPGD----------------EGWNLAWRSIKKV 1093 (1112)
Q Consensus 1047 ---~~IRelI~~~~lP~eL~~eL~~A~~~lg~-------~-------~ped----------------~g~e~ll~AIK~V 1093 (1112)
++||++|++.++|+++.++|.++|.+++. + ..|| .+.+++++|||+|
T Consensus 78 ~~~~~ir~~i~~~~lP~~l~~~l~~a~~~l~~~~g~~~~~vaVRSSa~~ED~~~~SfAGq~~s~l~v~~~~~l~~aik~v 157 (782)
T TIGR01418 78 AASAEIRELILNTPFPPDLEEAIREAYDKLSEDYGKEEADVAVRSSATAEDLPDASFAGQQETYLNVTGEEEVLEHVKKC 157 (782)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcCCcCceEEEECCCCCCCCCCCCcccceeeeecCCCHHHHHHHHHHH
Confidence 89999999999999999999999886531 1 1233 1379999999999
Q ss_pred cccCCchhHHhcchh
Q 001268 1094 LKFKSAHFSYHNLDD 1108 (1112)
Q Consensus 1094 WASlyneRAi~s~~~ 1108 (1112)
|||+||+||+.-|+.
T Consensus 158 ~aS~~~~rA~~Yr~~ 172 (782)
T TIGR01418 158 WASLFTDRAISYRVS 172 (782)
T ss_pred HHccCCHHHHHHHHH
Confidence 999999999987653
No 5
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=99.69 E-value=1.1e-16 Score=201.34 Aligned_cols=132 Identities=15% Similarity=0.213 Sum_probs=108.8
Q ss_pred cceeeCCC---cCCCCCCHHhhHHHHhHhhCCCCCCCCCceeeCHHHHHHHHHhcccchHHHHHHHHHhhcCCCCHHHH-
Q 001268 971 KYAVSVED---FTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL- 1046 (1112)
Q Consensus 971 ~~Vl~l~e---~d~~lVGgKAANLGeL~~~lpag~~VP~GFaIPfgAye~fL~~~~n~~L~~~I~~L~a~ld~~D~~~L- 1046 (1112)
+|++++.+ .+...||||++|||+|.+ +||+||+||||||++|+.||+.+ ++.+.|...+..++..+...+
T Consensus 3 ~~v~~l~~~~~~~~~~vGgKa~~L~~L~~---~G~~VP~gfvi~~~~~~~~l~~~---~~~~~i~~~l~~~~~~~~~~~~ 76 (871)
T PRK06241 3 SYVLDFQEIDKTQLPLVGGKGANLGELSR---AGIPVPEGFCVTTEAYKKFLEQN---EEFDALLDQLSALKLEDREQIG 76 (871)
T ss_pred ceEEEhhhcCcccccccChHHHHHHHHHH---CCCCCCCeEEecHHHHHHHHHhC---CcHHHHHHHHhcCCCCCHHHHH
Confidence 57788764 567889999999999998 59999999999999999999998 455555555555666665444
Q ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHHHhcCCC---------CCCC----------------ccHHHHHHHHhhhcccCC
Q 001268 1047 ---QEIQEAVLQMSAPLSLIYELKNKMRSSGMP---------WPGD----------------EGWNLAWRSIKKVLKFKS 1098 (1112)
Q Consensus 1047 ---~~IRelI~~~~lP~eL~~eL~~A~~~lg~~---------~ped----------------~g~e~ll~AIK~VWASly 1098 (1112)
++||++|.+.++|+++.++|.+++..+|.. ..|| .+.+++++|||+||||+|
T Consensus 77 ~~~~~ir~~i~~~~~p~~l~~~l~~a~~~~~~~~~~aVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~~~~ai~~~waS~~ 156 (871)
T PRK06241 77 EISAKIREVIEAIEIPEDIVEAIAAALSKFGEDHAYAVRSSATAEDLPTASFAGQQDTYLNVIGKDAILQHIRKCWASLF 156 (871)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCccCCCCCCCccccccccCCCCHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999987631 1122 148999999999999999
Q ss_pred chhHHhcchh
Q 001268 1099 AHFSYHNLDD 1108 (1112)
Q Consensus 1099 neRAi~s~~~ 1108 (1112)
|+||+..|++
T Consensus 157 ~~ra~~Yr~~ 166 (871)
T PRK06241 157 TERAVIYRIQ 166 (871)
T ss_pred CHHHHHHHHH
Confidence 9999987764
No 6
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []. Residues at the N terminus correspond to the transit peptide which is indispensable for the transport of the precursor protein into chloroplasts in plants []. This domain is present at the N terminus of some PEP-utilizing enzymes.; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2X0S_A 2OLS_A 1VBH_A ....
Probab=99.55 E-value=1.5e-16 Score=179.96 Aligned_cols=122 Identities=25% Similarity=0.339 Sum_probs=92.7
Q ss_pred CCCCCHHhhHHHHhHhhCCCCCCCCCceeeCHHHHHHHHHhcccchHHHHHHHHHhhcCCCCH---H-HHHHHHHHHHcC
Q 001268 981 PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDL---S-KLQEIQEAVLQM 1056 (1112)
Q Consensus 981 ~~lVGgKAANLGeL~~~lpag~~VP~GFaIPfgAye~fL~~~~n~~L~~~I~~L~a~ld~~D~---~-~L~~IRelI~~~ 1056 (1112)
..+|||||+||++|+. .|++||+||||||++|++||+++ +|.+.+..+.+.++..+. . ..++||++|.+.
T Consensus 3 ~~~vGgKa~~L~~L~~---~g~~VP~gfvIt~~~~~~~l~~~---~l~~~i~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 76 (327)
T PF01326_consen 3 ASLVGGKAANLAELRR---AGVPVPPGFVITTDAFQEFLESN---GLREEIEQLLEPLDLSDREDLQAISKEIRELILSA 76 (327)
T ss_dssp HHHHHHHHHHHHHHHH---TT-S---EEEE-HHHHHHHHTTC---CHHHHHHHHHHBE-EEEEEECSSHHTTCCHEEEEE
T ss_pred hHHCCHHHHHHHHHHH---CCCCCCcEEEecHHHHHHHHHcC---ChHHHHHHHHhhhccccHHHHHHHHHHHHHHHHhC
Confidence 3458999999999996 49999999999999999999998 799999888775554332 2 348999999999
Q ss_pred CCCHHHHHHHHHHHHhcCC---CC-------CCCc----------------cHHHHHHHHhhhcccCCchhHHhcchh
Q 001268 1057 SAPLSLIYELKNKMRSSGM---PW-------PGDE----------------GWNLAWRSIKKVLKFKSAHFSYHNLDD 1108 (1112)
Q Consensus 1057 ~lP~eL~~eL~~A~~~lg~---~~-------ped~----------------g~e~ll~AIK~VWASlyneRAi~s~~~ 1108 (1112)
++|+++.++|..++..++. ++ .||. +.+++++|||+||||+||+||+.-|+.
T Consensus 77 ~lp~~~~~~l~~~~~~~~~~~~~~aVRSSa~~ED~~~~sfAG~~~s~l~v~~~~~l~~Aik~v~aS~f~~ra~~yr~~ 154 (327)
T PF01326_consen 77 PLPEELVEELEAALEELGQRDQPLAVRSSATSEDGAEASFAGQYDSVLNVPGEEELLEAIKQVWASLFSPRALAYRRR 154 (327)
T ss_dssp T--HHHHHHHHHHHTHHHHHHHHCCCEECE-HHHHH-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcccccccceEEEeccccccccchHHHHHHHHHHhCCChHHHHHHHHHHHHhCcCCHHHHHHHHh
Confidence 9999999999999877531 11 1221 369999999999999999999987753
No 7
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=99.48 E-value=4.5e-14 Score=168.43 Aligned_cols=136 Identities=13% Similarity=0.165 Sum_probs=102.1
Q ss_pred cCCcceeeCCC---cCCCCCCHHhhHHHHhHhhCCCCCCCCCceeeCHHHHHHHHHhcc--cchHHHHHHHHHhhcCCC-
Q 001268 968 FRGKYAVSVED---FTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFINGG- 1041 (1112)
Q Consensus 968 ~~g~~Vl~l~e---~d~~lVGgKAANLGeL~~~lpag~~VP~GFaIPfgAye~fL~~~~--n~~L~~~I~~L~a~ld~~- 1041 (1112)
+..+||++|++ ...+++|||++||++|++ .|+|||+|||||+.+|++|++.++ -++|.++|.+.++.++..
T Consensus 4 ~~~~~v~~l~~~~~~~~~~lGgK~a~L~em~~---~glpVP~GFvITt~a~~~f~~~~~~~~~~l~~ei~~~l~~le~~~ 80 (530)
T PRK05878 4 TLENAVVLLDGGANQPRELLGGKGHGIDMMRR---LGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAET 80 (530)
T ss_pred ccCceEEECCCCChhhhhccCHHHHhHHHHHH---CCCCCCCcEEEeHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh
Confidence 45678999885 346789999999999998 399999999999999999999885 245777776665544321
Q ss_pred --------CHHHH----HH------HHHHHHcCCCCHHHHHHHHHHH----------Hhc----------CCCCCCCccH
Q 001268 1042 --------DLSKL----QE------IQEAVLQMSAPLSLIYELKNKM----------RSS----------GMPWPGDEGW 1083 (1112)
Q Consensus 1042 --------D~~~L----~~------IRelI~~~~lP~eL~~eL~~A~----------~~l----------g~~~ped~g~ 1083 (1112)
++..+ .. +++.|+++.+|++++++|.+.. .++ |.+.|.|. +
T Consensus 81 g~~fg~~~~plllsvrS~a~~S~pGm~dtiLn~gl~d~~~~~l~~~~g~~~~a~D~~~rF~~~y~~vv~~~~~~p~dp-~ 159 (530)
T PRK05878 81 GRTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEGGDPDFAADTRRRFTEMYRRIVGSGSPPPDDP-Y 159 (530)
T ss_pred hhccCCCCCCceEEEccCCCCCCccHhhhhhhcCCCHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHhccCCCCCCCh-H
Confidence 22212 23 9999999999999999997531 110 11233333 7
Q ss_pred HHHHHHHhhhcccCCchhHHhcch
Q 001268 1084 NLAWRSIKKVLKFKSAHFSYHNLD 1107 (1112)
Q Consensus 1084 e~ll~AIK~VWASlyneRAi~s~~ 1107 (1112)
+++.+|||.||||+||+||+.=|+
T Consensus 160 ~qL~~Aik~V~aS~~s~rA~~YR~ 183 (530)
T PRK05878 160 EQLRAAIEAVFASWNSPRAVAYRR 183 (530)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999996654
No 8
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=7.3e-13 Score=164.64 Aligned_cols=128 Identities=20% Similarity=0.280 Sum_probs=107.2
Q ss_pred ceeeCCC---cCCCCCCHHhhHHHHhHhhCCCCCCCCCceeeCHHHHHHHHHhcccchHHHHHHHHHhhcCCCCHHHH--
Q 001268 972 YAVSVED---FTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL-- 1046 (1112)
Q Consensus 972 ~Vl~l~e---~d~~lVGgKAANLGeL~~~lpag~~VP~GFaIPfgAye~fL~~~~n~~L~~~I~~L~a~ld~~D~~~L-- 1046 (1112)
++.++.+ .+..++|||+||||||.+ .|++||+|||||+.+|+.|++.+ ++.+.+.+.+..++..+..++
T Consensus 4 ~~~~~~e~~~~~~~lvGgKga~L~Em~~---~Gl~VP~GF~itt~a~~~f~~~~---~~~~~~~~~l~~~~~~~~~~l~~ 77 (740)
T COG0574 4 LILWLDEVKLEDVGLVGGKGASLGEMLK---MGLPVPPGFAITSEAYRYFLKEN---GLADKILKILSALDLNDNVELEF 77 (740)
T ss_pred cccchhhcCcchhhhcCCccCCHHHHHh---CCCCCCCeEEEeHHHHHHHHhcc---chHHHHHHHhcCCCcchhHHHHH
Confidence 3445443 678999999999999998 49999999999999999999999 788888887777766665555
Q ss_pred --HHHHHHHHcCCCCHHHHHHHHHHHHhc---CC--------------CCC-----CC-------ccHHHHHHHHhhhcc
Q 001268 1047 --QEIQEAVLQMSAPLSLIYELKNKMRSS---GM--------------PWP-----GD-------EGWNLAWRSIKKVLK 1095 (1112)
Q Consensus 1047 --~~IRelI~~~~lP~eL~~eL~~A~~~l---g~--------------~~p-----ed-------~g~e~ll~AIK~VWA 1095 (1112)
..+|..|+..++|.++.++|.++|..+ +. ++| ++ .+.++++.+|++|||
T Consensus 78 ~~~~~~~~i~~~~~p~~l~~ei~~al~~~~~~~~~~~~~avrss~taedL~~~sFagq~~t~lni~~~e~l~~~i~~~~a 157 (740)
T COG0574 78 RSELIRPLIMPTPLPEDLSAEIAEALEELTGYGDSDADVAVRSSATAEDLPGASFAGQQETYLNVDGIEDLLEAIKKCWA 157 (740)
T ss_pred HHHHHHhhhccCCCChHHHHHHHHHHHHhccccccceeEEEeeccccccCCcccccccccccCCcCCHHHHHHHHHHHHH
Confidence 889999999999999999999999985 20 122 21 259999999999999
Q ss_pred cCCchhHHhc
Q 001268 1096 FKSAHFSYHN 1105 (1112)
Q Consensus 1096 SlyneRAi~s 1105 (1112)
|+||+||+.=
T Consensus 158 Sl~~~RAi~Y 167 (740)
T COG0574 158 SLFVDRAIAY 167 (740)
T ss_pred hhcchhHHHH
Confidence 9999999853
No 9
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=99.37 E-value=1e-12 Score=164.51 Aligned_cols=133 Identities=14% Similarity=0.180 Sum_probs=101.4
Q ss_pred cceeeCCC---cCCCCCCHHhhHHHHhHhhCCCCCCCCCceeeCHHHHHHHHHhcc--cchHHHHHHHHHhhcC------
Q 001268 971 KYAVSVED---FTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFIN------ 1039 (1112)
Q Consensus 971 ~~Vl~l~e---~d~~lVGgKAANLGeL~~~lpag~~VP~GFaIPfgAye~fL~~~~--n~~L~~~I~~L~a~ld------ 1039 (1112)
+||+++++ .+..++|||++||++|++ + |+|||+|||||+.+|++|++.++ .++|.++|.+.++.++
T Consensus 2 ~~v~~~~~~~~~~~~~~GgK~a~L~em~~-~--glpVPpGFviTt~a~~~~~~~~~~~~~~l~~~i~~~~~~le~~~g~~ 78 (856)
T TIGR01828 2 KRVYAFGEGNASMKNLLGGKGANLAEMTK-L--GLPVPPGFTITTEACNEYYANGKQFPKGLQEEIKEALTLLEEKTGKK 78 (856)
T ss_pred CeEEECCCCCchhhhhcCHHHHhHHHHHh-C--CCCCCCcEEEeHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHhCcc
Confidence 46788775 346789999999999998 3 99999999999999999999985 2447777666655554
Q ss_pred ---CCCHHHH----------HHHHHHHHcCCCCHHHHHHHHH-------HHHhc-------C-----CC-----------
Q 001268 1040 ---GGDLSKL----------QEIQEAVLQMSAPLSLIYELKN-------KMRSS-------G-----MP----------- 1076 (1112)
Q Consensus 1040 ---~~D~~~L----------~~IRelI~~~~lP~eL~~eL~~-------A~~~l-------g-----~~----------- 1076 (1112)
..++..+ -.++++|.++.+|++++++|.+ +|..+ | ++
T Consensus 79 fg~~~~PllvsvrS~a~~smpgm~~tiLn~glnd~~~~~l~~~~g~~~fa~d~yrRfi~~~g~vvl~v~~~~f~~~~~~~ 158 (856)
T TIGR01828 79 FGDTENPLLVSVRSGAAVSMPGMMDTILNLGLNDETVEGLAKLTGNARFAYDSYRRFIQMFGDVVLGIPHELFEQILEAM 158 (856)
T ss_pred cCCCCCcceEEeccCCCCCCccHHHHHHhCCCCHHHHHHHHHhhCChHHHHHHHHHHHhhhcccccCCCchhHHHHHHHH
Confidence 2233222 2799999999999999999987 44432 1 10
Q ss_pred -----C------------------------------CCCccHHHHHHHHhhhcccCCchhHHhcch
Q 001268 1077 -----W------------------------------PGDEGWNLAWRSIKKVLKFKSAHFSYHNLD 1107 (1112)
Q Consensus 1077 -----~------------------------------ped~g~e~ll~AIK~VWASlyneRAi~s~~ 1107 (1112)
+ |++ .++++.+||+.||||+||+||+.=|+
T Consensus 159 ~~~~~~~~d~~~s~~~~~~l~~~f~~~~~~~~g~~f~~~-p~~qL~~Ai~~V~aS~~s~rA~~YR~ 223 (856)
T TIGR01828 159 KEEKGVKLDTDLTADDLKELIEKYKAIYREATGKPFPQD-PKEQLELAIKAVFDSWNNPRAIVYRR 223 (856)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 0 111 28899999999999999999986553
No 10
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=98.80 E-value=9.6e-09 Score=129.19 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=42.4
Q ss_pred cceeeCCC-------cCCCCCCHHhhHHHHhHhhCCCCCCCCCceeeCHHHHHHHHHhcc
Q 001268 971 KYAVSVED-------FTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI 1023 (1112)
Q Consensus 971 ~~Vl~l~e-------~d~~lVGgKAANLGeL~~~lpag~~VP~GFaIPfgAye~fL~~~~ 1023 (1112)
+||.++.+ .+.+++|||++||++|.+ .|+|||+||+|||.+|+.|++...
T Consensus 4 ~~v~~f~~~~~~~~~~~~~llGgKga~L~em~~---~glpVPpgF~itt~ac~~~~~~~~ 60 (879)
T PRK09279 4 KYVYLFGGGKAEGNASMKDLLGGKGANLAEMTN---LGLPVPPGFTITTEACNEYYANGK 60 (879)
T ss_pred ceEEEeCCCCcccChhHHhhcCHHHHhHHHHHH---CCCCCCCcEEEcHHHHHHHHhcCc
Confidence 45666632 456899999999999998 499999999999999999998775
No 11
>PLN02316 synthase/transferase
Probab=96.95 E-value=0.02 Score=74.37 Aligned_cols=93 Identities=15% Similarity=0.310 Sum_probs=58.4
Q ss_pred ceeEEEeecCCCCCceEEEEEEEeec----CCceEEEeeeeecCCCccccCCCCCCCcccccccccc---ccceEEEEEe
Q 001268 20 GMKLQINASGSSIGRNVRVQFQLRNC----ARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKS---GEIYLVTIEL 92 (1112)
Q Consensus 20 ~~~~~~~~~~~~~g~~~~v~~~~~~~----~~~l~lHWGv~~~~~~~W~~P~~~Pk~~a~~Tpf~~~---g~~~~v~i~~ 92 (1112)
|..+-|.=.-...|+.++|-+-..+. ..++++|=|+ ..|...+ .-++++|+ ||.-..++.+
T Consensus 140 ~~~~f~~P~~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gf-----N~W~~~~-------f~~~~~k~~~~g~ww~~~v~V 207 (1036)
T PLN02316 140 GNKLFVYPQVVKPDSDIEVYLNRSLSTLANEPDVLIMGAF-----NGWRWKS-------FTERLEKTELGGDWWSCKLHI 207 (1036)
T ss_pred CCeEEeccccccCCCeeEEEEcCCCCccCCCCceEEEecc-----ccccccc-------cceeccccccCCCeEEEEEec
Confidence 33344444444566677666655442 3456667443 4565532 22333343 7777776666
Q ss_pred cCCcceeEEEEEEeccccchhcccCCcccccCCC
Q 001268 93 RDPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPE 126 (1112)
Q Consensus 93 ~d~~i~ai~Fvl~de~~~~W~~~~g~nf~v~l~~ 126 (1112)
++. .+.++||+.|+ .+.|=+|+|.||+++.+.
T Consensus 208 p~~-A~~ldfVf~~g-~~~yDNN~~~Df~~~V~~ 239 (1036)
T PLN02316 208 PKE-AYKMDFVFFNG-QNVYDNNDHKDFCVEIEG 239 (1036)
T ss_pred Ccc-ceEEEEEEeCC-ccccccCCCCceEEEeCC
Confidence 655 45599999998 568888899999999863
No 12
>PRK05849 hypothetical protein; Provisional
Probab=96.90 E-value=0.0069 Score=76.70 Aligned_cols=176 Identities=11% Similarity=0.089 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHhhCchHHHHHhhhCCCchhhccchHHHHhhhhhHH----HHHHHHhhhH-
Q 001268 756 ALQAKAILDRLQLVLAE------RSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAV----LSILINRFEP- 824 (1112)
Q Consensus 756 ALrlkA~LDR~rr~~e~------~sd~~~~~~q~~a~~lG~alGid~~~v~~F~Ee~IRas~~f~----lS~ll~~L~~- 824 (1112)
...++..+.++|.+++. ........+-.....+|..+|+++.-+--.+-+.|++-..-. ....+..+-.
T Consensus 571 ~~~~~~ll~~~r~~i~~RE~~Kf~~tr~l~~~r~~l~~lG~~Lg~~~dDvf~L~~~El~~~~~~~~~~~~~~~l~~~i~~ 650 (783)
T PRK05849 571 NIDAEEFLDFLKEAIEGRELVKFEFTRNLSDALELIALLGAYYGISREDLSHLDIKDLLNLYSSLLSINPKELFLEEIKR 650 (783)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeecHHHHHHHHhccccccchhhHHHHHHH
Confidence 35568888888887775 234445555556667888899977766555555566422110 0111111100
Q ss_pred --HHHHH----------hc-CCCc---------eeeeceeEEEEEEEeccccccccccCCCCeEEEEeCCCC-cccc-CC
Q 001268 825 --VLRKV----------AN-LGCW---------QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITG-EEEI-PV 880 (1112)
Q Consensus 825 --~lR~~----------ag-l~~w---------qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~G-dEEI-p~ 880 (1112)
..... .+ ...| ..++||.+.|.+++|+.-. . ...+..|||+..++= ---+ ..
T Consensus 651 rk~~~~~~~~~~~P~li~~~~~~~~~~~~~~~~n~is~g~v~g~v~v~~~~~---~-~~~~G~Ilv~~~tdPg~~~lf~~ 726 (783)
T PRK05849 651 NKQEYELTRSLKLPPLICSADDVYSFEIHESKPNFITQKRVEATVADLDNDN---D-DDLEGKIVCIENADPGYDWLFTK 726 (783)
T ss_pred HHHHHHHHhcCCCCCeeccCCccccccccCCCCCCccCCEEEEEEEEecChh---h-cCCCCCEEEeCCCCccchHHHhh
Confidence 00000 00 0000 2389999999999987542 1 222458888877652 1112 13
Q ss_pred CceEEEcCCCCCcchhhhhhcccCCceEEEEechHHHHHHHhcCCCcEEEEEcCCceE
Q 001268 881 GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 938 (1112)
Q Consensus 881 ~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~l~~l~Gk~V~l~vss~~V~ 938 (1112)
+++||||..-+ ..||.+++||..|||-+.--.....+.+ .+|+.|.+....+.|.
T Consensus 727 ~i~g~Vte~Gg-~~SH~AI~ARe~gIPavvg~~~~~~~~~--~~g~~v~vDg~~G~v~ 781 (783)
T PRK05849 727 GIAGLITCYGG-ANSHMAIRAAELGLPAVIGVGEELFEKW--LKAKRILLDCASQRIE 781 (783)
T ss_pred heeEEEEcCCC-cccHHHHHHHHcCCCEEEccCcchhhhc--cCCCEEEEECCCCEEE
Confidence 79999997766 8999999999999997665322212222 3688888877766554
No 13
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=96.75 E-value=0.041 Score=71.16 Aligned_cols=178 Identities=16% Similarity=0.087 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHhhCchHHHHHhhh---CC--CchhhccchHHHHhhhh---hHHHHHH
Q 001268 753 AQWALQAKAILDRLQLVLAE------RSQTYQKKFQPSVKYLGCLL---GV--EKYVIDNFTEELVRAQS---EAVLSIL 818 (1112)
Q Consensus 753 ~~wALrlkA~LDR~rr~~e~------~sd~~~~~~q~~a~~lG~al---Gi--d~~~v~~F~Ee~IRas~---~f~lS~l 818 (1112)
......++..+.++|..+.. +.......+-.....+|+.| |+ ++.-+=-++-+.|++-. .....++
T Consensus 649 ~~~~~~~~~~l~~ar~~~~~RE~~k~~~~~~~~~~R~~~~~~g~~l~~~G~L~~~~Dif~L~~~El~~~~~g~~~~~~~i 728 (871)
T PRK06241 649 EQKAKETKRMISRLRNFIGYREYPKYGRIRRYGIYKQALLKEAEQLVQAGVLAEPEDIFYLTFEELREVVRTNKLDYELI 728 (871)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHCCCCCChhheeeecHHHHHHHHcCCcccHHHH
Confidence 34466778888888877754 33445555667778888877 88 54444444555555311 1111122
Q ss_pred HHhhhHHHHHHh----------c----------CC---Cc--eeeeceeEEEEEEEeccccccccccCCCCeEEEEeCCC
Q 001268 819 INRFEPVLRKVA----------N----------LG---CW--QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRIT 873 (1112)
Q Consensus 819 l~~L~~~lR~~a----------g----------l~---~w--qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~ 873 (1112)
..+=..+-+... | .. .+ ..+++|.+.|.++++....+. ....+.|||+...+
T Consensus 729 ~~rk~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~G~v~G~v~v~~~~~~~---~~~~g~ILV~~~~~ 805 (871)
T PRK06241 729 AKRKEEYELYEKLTPPRVMTSDGEIITGKYKRENLPAGALIGLPVSSGVVEGRARVILNPEDA---DLEKGDILVTAFTD 805 (871)
T ss_pred HHHHHHHHHhhcCCCCceecCCCccccccccccCCCCCceeEeecCCCeEEEEEEEECCHHHc---CCCCCeEEEecCCC
Confidence 211111111000 0 00 11 237899999999998776654 34567899998887
Q ss_pred CccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEEEechHHHHHHHhc-CCCcEEEEEcCCceEE
Q 001268 874 GEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLK-EGKAVSIRLKSTNLII 939 (1112)
Q Consensus 874 GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~l~~l-~Gk~V~l~vss~~V~l 939 (1112)
+. ..| ..+.||||..-+ .+||.+|.||..|||-++.-... .+.+ +|..|.+....+.|.+
T Consensus 806 p~-~~~~~~~~~giv~~~Gg-~~sH~aIvare~gIPavv~~~~~----~~~l~~G~~v~lDg~~G~v~i 868 (871)
T PRK06241 806 PG-WTPLFVSIKGLVTEVGG-LMTHGAVIAREYGIPAVVGVENA----TKLIKDGQRIRVDGTEGYVEI 868 (871)
T ss_pred HH-HHHHHHhceEEEEcCCC-cchHHHHHHHhcCCCEEEccccH----HhhcCCCCEEEEECCCCEEEE
Confidence 63 344 489999887665 99999999999999977653222 2333 8999999887776654
No 14
>PRK08296 hypothetical protein; Provisional
Probab=96.47 E-value=0.0038 Score=76.86 Aligned_cols=97 Identities=19% Similarity=0.145 Sum_probs=72.6
Q ss_pred eeeeceeEEEEEEEeccccccccccCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEEEec
Q 001268 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1112)
..++||.+.|.+++|.+..+.. ....+.|||+...+- ..+| ..+.||||..-+ .+||.++.||..|||-+.+-.
T Consensus 503 ~~~s~G~v~G~vrvv~~~~~~~--~~~~g~ILV~~~tdP-~~~~~~~~~~GiVte~Gg-~~SHaAIvARe~GIPaVvgv~ 578 (603)
T PRK08296 503 FAASPGVVEGPARVIRSADELS--EVQEGEILVCPVTSP-SWAPIFAKIKATVTDIGG-VMSHAAIVCREYGLPAVVGTG 578 (603)
T ss_pred eecCCCeEEEEEEEeCCHHHHH--hccCceEEEeCCCCH-HHHHHHHHheEEEEecCC-CcchHHHHHHHcCCCEEEcCc
Confidence 4578999999999998876543 245678999977653 3354 589999997665 899999999999999776633
Q ss_pred hHHHHHHHhcCCCcEEEEEcCCceEE
Q 001268 914 QNILRNLRLKEGKAVSIRLKSTNLII 939 (1112)
Q Consensus 914 ~~~l~~l~~l~Gk~V~l~vss~~V~l 939 (1112)
.. . -.-.+|..|.+..+.+.|.+
T Consensus 579 ~a-t--~~l~dG~~V~vDg~~G~V~i 601 (603)
T PRK08296 579 NA-T--KRIKTGQRLRVDGTKGVVTI 601 (603)
T ss_pred cH-h--hhcCCCCEEEEECCCCEEEE
Confidence 21 1 12248999999888776665
No 15
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=95.68 E-value=0.011 Score=54.39 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=47.9
Q ss_pred CCCCeEEEEeCCCCccccC---CCceEEEcCCCCCcchhhhhhcccCCceEEEEechHHHHHHHhcCCCcEEEEEc
Q 001268 861 YRRPTIIIASRITGEEEIP---VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLK 933 (1112)
Q Consensus 861 ~~~P~Illv~~v~GdEEIp---~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~l~~l~Gk~V~l~vs 933 (1112)
..+++|||++..+-.. ++ .+++||||..-. .+||.++.||.+|||.+..-... .. .-.+|.+|.+..+
T Consensus 8 ~~~~~IlV~~~~~p~~-~~~~~~~~~Giv~~~Gg-~~SH~aIlAr~~giP~ivg~~~~-~~--~i~~g~~v~lDg~ 78 (80)
T PF00391_consen 8 LPEGVILVAEELTPSD-LALDLQRVAGIVTEEGG-PTSHAAILARELGIPAIVGVGDA-TE--AIKDGDWVTLDGN 78 (80)
T ss_dssp TTSTEEEEESS--TTC-HHSHHTTSSEEEESSSS-TTSHHHHHHHHTT-EEEESTTTH-HH--HSCTTEEEEEETT
T ss_pred CCCCEEEEECCCCHHH-HhcchhheEEEEEEcCC-ccchHHHHHHHcCCCEEEeeccH-hh--ccCCCCEEEEECC
Confidence 4568999998876543 44 599999997765 89999999999999988775432 22 2236888877543
No 16
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.15 E-value=0.11 Score=48.83 Aligned_cols=65 Identities=26% Similarity=0.551 Sum_probs=37.4
Q ss_pred CeEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeecccC-CCceeeEEEEEccCCceeEEEEEEecC-CcccccC
Q 001268 288 AAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIAT-ARGSFQMVDVNLQKRKFVGIQFVIWSG-GSWIKNN 365 (1112)
Q Consensus 288 ~lvLHWGv~~~~~~eW~~PP~~~~P~~S~~~~~A~eT~f~~~~~-~~~~~~~lei~l~~~~~~gi~FVLk~~-~~W~k~~ 365 (1112)
.+.||+|.. .|..+|. .+|++... ....+-..+|+++.+.. .|.||++++ ++|=+|+
T Consensus 20 ~v~~~~G~n-----~W~~~~~---------------~~m~~~~~~~~~~~~~~tv~vP~~a~-~~dfvF~dg~~~wDNN~ 78 (87)
T PF03423_consen 20 NVHLHGGFN-----RWTHVPG---------------FGMTKMCVPDEGGWWKATVDVPEDAY-VMDFVFNDGAGNWDNNN 78 (87)
T ss_dssp EEEEEETTS------B-SSS----------------EE-EEESS---TTEEEEEEE--TTTS-EEEEEEE-SSS-EESTT
T ss_pred cEEEEecCC-----CCCcCCC---------------CCcceeeeeecCCEEEEEEEEcCCce-EEEEEEcCCCCcEeCCC
Confidence 478999975 4987764 22222110 00113445677766655 799999996 8999999
Q ss_pred CcceEEec
Q 001268 366 GENFFVGL 373 (1112)
Q Consensus 366 G~DF~V~l 373 (1112)
|.||+++.
T Consensus 79 g~nY~~~V 86 (87)
T PF03423_consen 79 GANYHFPV 86 (87)
T ss_dssp TS-EEEES
T ss_pred CccEEEEc
Confidence 99999985
No 17
>PRK05865 hypothetical protein; Provisional
Probab=95.00 E-value=0.046 Score=70.24 Aligned_cols=96 Identities=16% Similarity=0.065 Sum_probs=71.5
Q ss_pred eeeceeEEEEEEEeccccccccccCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEEEech
Q 001268 837 VISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQ 914 (1112)
Q Consensus 837 vIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D~ 914 (1112)
.++||.+.|.+++|.. . ......++.|||+...+- ..+| ..+.||||..-. .+||.++-||..|||-+.+-..
T Consensus 740 ~~s~G~v~G~vrvv~~-~--~~~~~~~g~ILVa~~tdp-~~~~~~~~a~giVte~Gg-~~SH~AIvARe~gIPaVvgv~~ 814 (854)
T PRK05865 740 GVCGGRVRGRVRIVRP-E--TIDDLQPGEILVAEVTDV-GYTAAFCYAAAVVTELGG-PMSHAAVVAREFGFPCVVDAQG 814 (854)
T ss_pred eccCCccEEEEEEecH-H--HhhhcCCCeEEEeCCCCH-HHHHHHHHheEEEeccCC-CccHHHHHHHHcCCCEEEcccc
Confidence 4789999999999962 2 223456789999977652 2344 489999997665 8999999999999998877432
Q ss_pred HHHHHHHh-cCCCcEEEEEcCCceEEee
Q 001268 915 NILRNLRL-KEGKAVSIRLKSTNLIISD 941 (1112)
Q Consensus 915 ~~l~~l~~-l~Gk~V~l~vss~~V~l~~ 941 (1112)
. .+. .+|+.|.+..+.+.|.+-+
T Consensus 815 a----t~~l~dG~~V~vDg~~G~V~~l~ 838 (854)
T PRK05865 815 A----TRFLPPGALVEVDGATGEIHVVE 838 (854)
T ss_pred H----hhcCCCCCEEEEECCCcEEEEec
Confidence 2 222 3899999998887777643
No 18
>PLN02316 synthase/transferase
Probab=94.81 E-value=0.63 Score=61.09 Aligned_cols=89 Identities=13% Similarity=0.341 Sum_probs=55.6
Q ss_pred CCCCceEEEEEEEee----cCCceEEEeeeeecCCCccccCCCCCCCccccccccccccceEEEEEecCCcceeEEEEEE
Q 001268 30 SSIGRNVRVQFQLRN----CARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILK 105 (1112)
Q Consensus 30 ~~~g~~~~v~~~~~~----~~~~l~lHWGv~~~~~~~W~~P~~~Pk~~a~~Tpf~~~g~~~~v~i~~~d~~i~ai~Fvl~ 105 (1112)
...|.+++|-.--.| .+.++.+|||.. .|.-....+ ..-+.++ .+.|+.-..+|.++. ..+-+.||+.
T Consensus 325 ~~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N-----~W~~~~~~~-~~~~~~~-~~~g~ww~a~v~vP~-~A~~mDfVFs 396 (1036)
T PLN02316 325 FKAGDTVKLYYNRSSGPLAHSTEIWIHGGYN-----NWIDGLSIV-EKLVKSE-EKDGDWWYAEVVVPE-RALVLDWVFA 396 (1036)
T ss_pred cCCCCEEEEEECCCCCCCCCCCcEEEEEeEc-----CCCCCCccc-ceeeccc-CCCCCEEEEEEecCC-CceEEEEEEe
Confidence 344555555444333 377899999995 454433311 0112222 113776666655553 3678999999
Q ss_pred ecc---ccchhcccCCcccccCCC
Q 001268 106 DGI---HDRWLRLNHGNFRIEIPE 126 (1112)
Q Consensus 106 de~---~~~W~~~~g~nf~v~l~~ 126 (1112)
|+. .+.|=+++|.|||++.+.
T Consensus 397 dg~~~~~~~yDNn~~~Dyh~~v~~ 420 (1036)
T PLN02316 397 DGPPGNARNYDNNGRQDFHAIVPN 420 (1036)
T ss_pred cCCcccccccccCCCcceeeecCC
Confidence 973 467888899999999874
No 19
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=94.74 E-value=0.027 Score=72.30 Aligned_cols=105 Identities=17% Similarity=0.166 Sum_probs=69.9
Q ss_pred eeeeceeEEEEEEEeccccccccccCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEEEec
Q 001268 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1112)
.+.+||.|+|.++....-.. .-....++.|||....+ -++++ ..+.||||..-+ ..||.+|.||++|||-++.-.
T Consensus 398 ~~aspGaa~G~v~~~~~~a~-~~~~~~~~~ILV~~et~-P~di~~m~~a~GIvT~~GG-~TSHAAIVAR~lGiP~VvG~~ 474 (879)
T PRK09279 398 LPASPGAATGKIVFTADEAE-ALAARGEKVILVRPETS-PEDIHGMHAAEGILTARGG-MTSHAAVVARGMGKPCVVGAG 474 (879)
T ss_pred cccCCCeEEEEEEEChHHHH-HhhccCCCEEEEECCCC-HHHHhhhhHeeEEEEeCCC-ccchHHHHHHHcCCCEEeccC
Confidence 45899999999977322111 11123556888876654 44566 378899997766 899999999999999766532
Q ss_pred hHHHH---------HHHhcCCCcEEEEEcCCceEEeecC
Q 001268 914 QNILR---------NLRLKEGKAVSIRLKSTNLIISDIS 943 (1112)
Q Consensus 914 ~~~l~---------~l~~l~Gk~V~l~vss~~V~l~~~~ 943 (1112)
.-.++ .-.-.+|..|.+..+.+.|...+..
T Consensus 475 ~~~id~~~~~~~~~~~~l~~Gd~VtIDG~~G~V~~g~~~ 513 (879)
T PRK09279 475 ALRIDEKAKTFTVGGGTLKEGDVITIDGSTGEVYLGEVP 513 (879)
T ss_pred cceEecccCEEEECCEEecCCCEEEEECCCCEEEECCch
Confidence 21110 0112478899888887777766544
No 20
>PRK06354 pyruvate kinase; Provisional
Probab=94.61 E-value=0.038 Score=68.30 Aligned_cols=96 Identities=14% Similarity=0.176 Sum_probs=71.7
Q ss_pred eeeeceeEEEEEEEeccccccccccCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEEEec
Q 001268 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1112)
+..+||.+.|.++++....+. ..+.++.|||++..+- +.+| ..+.||||..-+ ..||.++.||.+|||-+.+-.
T Consensus 486 ~~as~G~~~G~v~~~~~~~~~--~~~~~~~ILV~~~~~P-~~~~~~~~~~GiVt~~Gg-~tSH~AIvAR~lgIPaVvg~~ 561 (590)
T PRK06354 486 QGIGRKSVSGKARVAKTAAEV--AKVNEGDILVTPSTDA-DMIPAIEKAAAIITEEGG-LTSHAAVVGLRLGIPVIVGVK 561 (590)
T ss_pred cccccccccceEEEeCChHhh--ccCCCCeEEEeCCCCH-HHHHhHHhcEEEEEecCC-CcchHHHHHHhcCCCEEEecc
Confidence 457899999999998876553 3567789999987765 4455 599999997665 899999999999999877743
Q ss_pred hHHHHHHHhcCCCcEEEEEcCCceE
Q 001268 914 QNILRNLRLKEGKAVSIRLKSTNLI 938 (1112)
Q Consensus 914 ~~~l~~l~~l~Gk~V~l~vss~~V~ 938 (1112)
.. .. .-.+|..|.+....+.|.
T Consensus 562 ~~-~~--~l~~G~~v~vDg~~G~V~ 583 (590)
T PRK06354 562 NA-TS--LIKDGQIITVDAARGVVY 583 (590)
T ss_pred ch-hh--ccCCCCEEEEECCCCEEE
Confidence 32 11 123788888877665443
No 21
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=94.52 E-value=0.044 Score=70.00 Aligned_cols=99 Identities=15% Similarity=0.210 Sum_probs=73.6
Q ss_pred eeeeceeEEEEEEEeccccccccccCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEEEec
Q 001268 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1112)
..++||.+.|.++++.+..+.. .+..+.|||+...+- +++| ..+.||||..-. ..||.++.||+.|||-+..-
T Consensus 358 ~~~~~G~~~G~v~v~~~~~d~~--~~~~g~ILV~~~~~p-~~~~~l~~~~giVte~Gg-~tSH~AivAR~lgIPavvg~- 432 (782)
T TIGR01418 358 RAAGPGIASGKVKVIFDLKEMD--KFEEGDILVTDMTDP-DWEPAMKRASAIVTNEGG-MTCHAAIVARELGIPAVVGT- 432 (782)
T ss_pred cccCCCceEEEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHhHhheEEEEcCCC-CccHHHHHHHhcCCCEEEcc-
Confidence 4689999999999998887754 356678999877653 3455 499999998766 89999999999999976652
Q ss_pred hHHHHHHHhcCCCcEEEEEcC---CceEEee
Q 001268 914 QNILRNLRLKEGKAVSIRLKS---TNLIISD 941 (1112)
Q Consensus 914 ~~~l~~l~~l~Gk~V~l~vss---~~V~l~~ 941 (1112)
.+....+ .+|..|.+.... +.|...+
T Consensus 433 ~~~~~~l--~~G~~v~vDg~~~~~G~v~~~~ 461 (782)
T TIGR01418 433 GDATKTL--KDGMEVTVDCAEGDTGYVYAGK 461 (782)
T ss_pred cchhhcc--cCCCEEEEEcCCCCCcEEEeCC
Confidence 2212211 369999998887 5555544
No 22
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=94.46 E-value=0.06 Score=65.86 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=69.0
Q ss_pred ceeeeceeEEEEEEE-eccccccccccCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEEE
Q 001268 835 WQVISPVEVCGFITS-VNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATC 911 (1112)
Q Consensus 835 wqvIspG~A~G~Lv~-V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc 911 (1112)
=..++||.+.|+++. .+...+. ....++.|||+...+- ++++ ..+.||||..-. ..||.++.||..|||-+..
T Consensus 353 G~~as~G~a~G~V~~~~~~~~~~--~~~~~g~ILV~~~t~P-~~~~~~~~a~GIVte~Gg-~tSHaAivARelgiP~VvG 428 (530)
T PRK05878 353 GLPACPGVVSGTAYTDVDEALDA--ADRGEPVILVRDHTRP-DDVHGMLAAQGIVTEVGG-ATSHAAVVSRELGRVAVVG 428 (530)
T ss_pred CeeccCceEEEEEEECHHHHHHH--hhccCCEEEEECCCCH-HHHhhhHhheEEEEccCC-ccchHHHHHHHcCCCEEEc
Confidence 356899999999863 2222111 1244568999876653 3455 489999998776 8999999999999998876
Q ss_pred echHHHHHHHhcCCCcEEEEEcCCceEEeec
Q 001268 912 FDQNILRNLRLKEGKAVSIRLKSTNLIISDI 942 (1112)
Q Consensus 912 ~D~~~l~~l~~l~Gk~V~l~vss~~V~l~~~ 942 (1112)
-... ...+ ..|..|.+....+.|.-...
T Consensus 429 ~~~~-~~~~--~~G~~VtvDg~~G~V~~G~~ 456 (530)
T PRK05878 429 CGAG-VAAA--LAGKEITVDGYEGEVRQGVL 456 (530)
T ss_pred ccch-hhcc--CCCCEEEEECCCCEEEeCcc
Confidence 4322 1222 46999988877665554433
No 23
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=94.37 E-value=0.036 Score=70.92 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=70.6
Q ss_pred eeeeceeEEEEEEEeccccccccccCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEEEec
Q 001268 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1112)
..++||.++|.++++....+.. .+..+.|||+...+- ++++ ..+.||||..-. ..||.++.||++|||-+.--
T Consensus 360 ~~~~~G~~~G~v~v~~~~~~~~--~~~~g~ILV~~~~~p-~~~~~l~~~~givt~~Gg-~tSH~AilAR~lgIPavvg~- 434 (795)
T PRK06464 360 RAIGPGIGSGKVRVILDISEMD--KVQPGDVLVTDMTDP-DWEPVMKRASAIVTNRGG-RTCHAAIIARELGIPAVVGT- 434 (795)
T ss_pred cccCCCceeeEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHHHhheEEEEcCCC-CcchHHHHHHHcCCCEEEcc-
Confidence 4578999999999998877654 345678999876653 3444 489999997765 89999999999999955432
Q ss_pred hHHHHHHHhcCCCcEEE---EEcCCceEEeec
Q 001268 914 QNILRNLRLKEGKAVSI---RLKSTNLIISDI 942 (1112)
Q Consensus 914 ~~~l~~l~~l~Gk~V~l---~vss~~V~l~~~ 942 (1112)
.+.... -.+|..|.+ ....+.|...+.
T Consensus 435 ~~~~~~--l~~G~~v~v~~~Dg~~G~v~~~~~ 464 (795)
T PRK06464 435 GNATEV--LKDGQEVTVSCAEGDTGYVYEGLL 464 (795)
T ss_pred Ccccce--ecCCCEEEEEeccCCCcEEEeCCc
Confidence 111111 137998888 555555555443
No 24
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=94.21 E-value=0.046 Score=70.32 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=70.3
Q ss_pred eeeeceeEEEEEEEeccccccccccCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEEEec
Q 001268 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1112)
.+.+||.+.|+++.+..-.... ....++.|||....+- ++++ ..+.||||..-+ ..||.++.||++|||-++.-.
T Consensus 392 ~~aspG~a~G~v~~~~~~a~~~-~~~~~~~ILV~~~t~P-~d~~~~~~a~Givt~~GG-~tSHaAivAR~lgiP~VvG~~ 468 (856)
T TIGR01828 392 LPASPGAATGKIVFSAEDAVEL-AEKGKKVILVREETSP-EDIEGMHVAEGILTARGG-MTSHAAVVARGMGKCCVSGCE 468 (856)
T ss_pred cccCCCeEEEEEEEchHHHHHH-hhcCCCEEEEECCCCH-HHHhhhhhheEEEEccCC-CcchHHHHHHHcCCCEEEccc
Confidence 4589999999987752211111 1245678888876653 3455 478999998776 899999999999999776532
Q ss_pred hHHHHH---------HHhcCCCcEEEEEcCCceEEeecC
Q 001268 914 QNILRN---------LRLKEGKAVSIRLKSTNLIISDIS 943 (1112)
Q Consensus 914 ~~~l~~---------l~~l~Gk~V~l~vss~~V~l~~~~ 943 (1112)
.-.++. -.-..|..|.+..+.+.|...+..
T Consensus 469 ~~~id~~~~~~~~~~~~l~~Gd~VtvDg~~G~V~~g~~~ 507 (856)
T TIGR01828 469 ELKINEEAKTFTIGGRVFHEGDIISIDGSTGEIYLGEIP 507 (856)
T ss_pred ccccccccceeeeCCeEecCCCEEEEECCCCEEEECCCc
Confidence 211110 112478888888877777665443
No 25
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=92.61 E-value=0.19 Score=60.89 Aligned_cols=75 Identities=20% Similarity=0.283 Sum_probs=49.3
Q ss_pred CCCCeEEEEeCCCCcc--ccC-CCceEEEcCCCCCcchhhhhhcccCCceEEEEechHHHHHHHhcCCCcEEEEEcCCce
Q 001268 861 YRRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 937 (1112)
Q Consensus 861 ~~~P~Illv~~v~GdE--EIp-~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~l~~l~Gk~V~l~vss~~V 937 (1112)
.++|.|||++..+=-+ .++ .+|.||+|..-+ ..||.++.||.+|||-++--... +. .-.+|..|-+....+.|
T Consensus 394 ~~~~~ILVA~dLtPSd~a~Ld~~~V~Givt~~GG-~TSHtAILARslgIPaVvg~~~~-~~--~~~~G~~vilDG~~G~v 469 (473)
T PRK11377 394 FNSPTILLAENIYPSTVLQLDPAVVKGICLSAGS-PLSHSAIIARELGIGWICQQGEK-LY--AIQPEETLTLDVKTQRL 469 (473)
T ss_pred CCCCEEEEECCCCHHHHHhcCHhHeEEEEECCCC-cccHHHHHHHHcCCCEEEcchhh-Hh--hccCCCEEEEECCCCEE
Confidence 3568888884332111 111 389999997766 89999999999999965442221 22 22468888887776655
Q ss_pred EE
Q 001268 938 II 939 (1112)
Q Consensus 938 ~l 939 (1112)
.+
T Consensus 470 ~v 471 (473)
T PRK11377 470 NR 471 (473)
T ss_pred Ee
Confidence 54
No 26
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=92.49 E-value=0.33 Score=45.76 Aligned_cols=67 Identities=24% Similarity=0.483 Sum_probs=39.9
Q ss_pred CCceEEEeeeeecCCCccccCCC-CC-CCccccccccccccceEEEEEecCCcceeEEEEEEeccccchhcccCCccccc
Q 001268 46 ARTWILHWGFLYRGNTNWFIPAE-HP-KQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIE 123 (1112)
Q Consensus 46 ~~~l~lHWGv~~~~~~~W~~P~~-~P-k~~a~~Tpf~~~g~~~~v~i~~~d~~i~ai~Fvl~de~~~~W~~~~g~nf~v~ 123 (1112)
+..+.+|+|. +.|..++. .| +..+ + ..++....+|.++.. ...|+||++|. .+.|=+++|.||+++
T Consensus 18 ~~~v~~~~G~-----n~W~~~~~~~m~~~~~---~--~~~~~~~~tv~vP~~-a~~~dfvF~dg-~~~wDNN~g~nY~~~ 85 (87)
T PF03423_consen 18 APNVHLHGGF-----NRWTHVPGFGMTKMCV---P--DEGGWWKATVDVPED-AYVMDFVFNDG-AGNWDNNNGANYHFP 85 (87)
T ss_dssp S-EEEEEETT-----S-B-SSS-EE-EEESS--------TTEEEEEEE--TT-TSEEEEEEE-S-SS-EESTTTS-EEEE
T ss_pred CCcEEEEecC-----CCCCcCCCCCcceeee---e--ecCCEEEEEEEEcCC-ceEEEEEEcCC-CCcEeCCCCccEEEE
Confidence 4568899996 57977765 22 1111 1 115667777777544 44799999999 899999999999987
Q ss_pred C
Q 001268 124 I 124 (1112)
Q Consensus 124 l 124 (1112)
.
T Consensus 86 V 86 (87)
T PF03423_consen 86 V 86 (87)
T ss_dssp S
T ss_pred c
Confidence 4
No 27
>PRK05849 hypothetical protein; Provisional
Probab=92.16 E-value=0.074 Score=67.71 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=29.8
Q ss_pred CCCCCHHhhHHHHhHhhCCCCCCCCCceeeCHHHHH
Q 001268 981 PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFE 1016 (1112)
Q Consensus 981 ~~lVGgKAANLGeL~~~lpag~~VP~GFaIPfgAye 1016 (1112)
.-.+|+||+||..|++++ .+++||+|+++|..-+.
T Consensus 5 ~~~~~~KA~tL~~L~~~~-~~~~i~~~~v~~~~e~~ 39 (783)
T PRK05849 5 ELFFQTKAETLANLQPIL-KKAKILPLLLFSVREWL 39 (783)
T ss_pred ccccchHHHHHHHHHhhh-cCCCCCCeEEeCHHhhc
Confidence 346899999999999876 69999999999987543
No 28
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=91.19 E-value=0.53 Score=45.83 Aligned_cols=97 Identities=13% Similarity=0.205 Sum_probs=71.1
Q ss_pred eeeeceeEEEEEEEeccccccccccCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEEEec
Q 001268 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1112)
|.|..|.+.|+.++-++-.+... .++.-.||++.+.++| -+| ....||||.+.+ .-||-+|-+++.|||.+.-.+
T Consensus 6 qgIg~gsv~G~~~vA~~~~~~~~-k~~~g~iLv~~std~d-~v~~~eKa~aiItee~g-lTshaAVvgl~LgvPvIvG~~ 82 (111)
T COG3848 6 QGIGRGSVSGRAVVADSGKEAEQ-KFEEGVILVTPSTDAD-FVPALEKAAAIITEEGG-LTSHAAVVGLELGVPVIVGVK 82 (111)
T ss_pred eeecccceeeEEEEccCHhHhhC-CcccCcEEEeccCChh-hHHHHHhhheeEeccCC-ccccceeeEeecCCcEEEEec
Confidence 66788899999988777666543 2456789999888754 566 488999999988 999999999999999888655
Q ss_pred hHHHHHHHhcCCCcEEEEEcCCceEE
Q 001268 914 QNILRNLRLKEGKAVSIRLKSTNLII 939 (1112)
Q Consensus 914 ~~~l~~l~~l~Gk~V~l~vss~~V~l 939 (1112)
... +.+ .+|..|.+..+- ++.+
T Consensus 83 ~at-~~i--~dG~~vTvD~~r-G~VY 104 (111)
T COG3848 83 KAT-QLI--RDGAIVTVDAQR-GVVY 104 (111)
T ss_pred chh-hhc--cCCCEEEEeccc-ceEE
Confidence 542 111 367777665543 3444
No 29
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=89.90 E-value=0.37 Score=59.77 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=56.3
Q ss_pred CCCCeEEEEeCCCCcc--ccC-CCceEEEcCCCCCcchhhhhhcccCCceEEEEechHHHHHHHhcCCCcEEEEEcCCce
Q 001268 861 YRRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 937 (1112)
Q Consensus 861 ~~~P~Illv~~v~GdE--EIp-~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~l~~l~Gk~V~l~vss~~V 937 (1112)
+.+|.|||+...+-.+ .++ .+|.||||..-. ..||.++.||++|||-+..-. +.... -.+|..|.+....+.|
T Consensus 152 ~~~~~ILVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~AIlAr~lgIPavvg~~-~~~~~--~~~G~~vilDg~~G~v 227 (575)
T PRK11177 152 IQEEVILVAADLTPSETAQLNLKKVLGFITDIGG-RTSHTSIMARSLELPAIVGTG-NITKQ--VKNGDYLILDAVNNQI 227 (575)
T ss_pred CCCCeEEEecCCCHHHHhhhhhhheeEEEEcCCC-cccHHHHHHHHcCCCEEEcCh-hHHhh--ccCCCEEEEECCCCEE
Confidence 3567888887665322 121 489999997765 899999999999999765533 22221 2369999998888888
Q ss_pred EEeecC
Q 001268 938 IISDIS 943 (1112)
Q Consensus 938 ~l~~~~ 943 (1112)
.+.+..
T Consensus 228 ~~~P~~ 233 (575)
T PRK11177 228 YVNPTN 233 (575)
T ss_pred EECCCH
Confidence 887654
No 30
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=88.40 E-value=0.54 Score=58.29 Aligned_cols=78 Identities=23% Similarity=0.164 Sum_probs=55.6
Q ss_pred CCCCeEEEEeCCCCccccC----CCceEEEcCCCCCcchhhhhhcccCCceEEEEechHHHHHHHhcCCCcEEEEEcCCc
Q 001268 861 YRRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTN 936 (1112)
Q Consensus 861 ~~~P~Illv~~v~GdEEIp----~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~l~~l~Gk~V~l~vss~~ 936 (1112)
+.+|.|||++..+= .++. .++.||+|..-. ..||.++.||++|||-+..-... ... -.+|..|.+....+.
T Consensus 151 ~~~~~IlVa~~l~P-s~~~~l~~~~i~Givt~~Gg-~tSH~aIlAR~lgIP~vvg~~~~-~~~--~~~G~~v~vDg~~G~ 225 (565)
T TIGR01417 151 IQDEVILVAEDLTP-SETAQLNLKYVKGFLTDAGG-KTSHTAIMARSLEIPAIVGTKSV-TSQ--VKNGDTVIIDGVKGI 225 (565)
T ss_pred CCCCeEEEecCCCH-HHHHHhhhhheeEEEEccCC-CcchHHHHHHHcCCCEEEcchhH-Hhh--CCCCCEEEEECCCCE
Confidence 35678888865542 2332 379999997665 89999999999999976653222 221 237999999888888
Q ss_pred eEEeecC
Q 001268 937 LIISDIS 943 (1112)
Q Consensus 937 V~l~~~~ 943 (1112)
|.+.+..
T Consensus 226 v~~~P~~ 232 (565)
T TIGR01417 226 VIFNPSS 232 (565)
T ss_pred EEeCCCH
Confidence 8886643
No 31
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=86.85 E-value=0.68 Score=59.21 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=55.2
Q ss_pred CCCCeEEEEeCCCCccccC----CCceEEEcCCCCCcchhhhhhcccCCceEEEEechHHHHHHHhcCCCcEEEEEcCCc
Q 001268 861 YRRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTN 936 (1112)
Q Consensus 861 ~~~P~Illv~~v~GdEEIp----~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~l~~l~Gk~V~l~vss~~ 936 (1112)
+.+|.|||++..+-. +++ .+|+||+|..-+ ..||.++.||++|||.+.--. .... ...|..|.+....+.
T Consensus 319 ~~~~~Ilva~~l~ps-~~~~l~~~~i~Givt~~Gg-~tSH~aIlAr~lgIP~vvg~~--~~~~--~~~G~~vilDg~~G~ 392 (748)
T PRK11061 319 WPERFILVADELTAT-LLAELPQDRLAGVVVRDGA-ANSHAAILVRALGIPTVMGAD--IQPS--LLHQRLLIVDGYRGE 392 (748)
T ss_pred CCCCEEEEECCCCHH-HHHhhhhhheEEEEECCCC-CccHHHHHHHHcCCCEEEcCc--chhh--ccCCCEEEEECCCCE
Confidence 356788888665422 333 389999998776 889999999999999654322 1222 235999988888888
Q ss_pred eEEeecC
Q 001268 937 LIISDIS 943 (1112)
Q Consensus 937 V~l~~~~ 943 (1112)
|.+.+..
T Consensus 393 v~vnP~~ 399 (748)
T PRK11061 393 LLVDPEP 399 (748)
T ss_pred EEeCCCH
Confidence 8887654
No 32
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=85.66 E-value=1.2 Score=54.62 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=56.5
Q ss_pred CCCCeEEEEeCCCCccccCC---------CceEEEcCCCCCcchhhhhhcccCCceEEEEechHHHHHHHhcCCCcEEEE
Q 001268 861 YRRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIR 931 (1112)
Q Consensus 861 ~~~P~Illv~~v~GdEEIp~---------~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~l~~l~Gk~V~l~ 931 (1112)
.++|+||++ +||.| .|.|++|-.-+ ..||.++.||..+||-++-...... .+ .+|+.|-+.
T Consensus 153 ~~~~~IlvA------~dLtPSdta~l~~~~v~Gfvt~~GG-~TSHtAImARsl~IPavVg~~~~~~-~v--~~g~~viiD 222 (574)
T COG1080 153 IDEEVILVA------EDLTPSDTAQLDKKYVKGFVTDIGG-RTSHTAILARSLGIPAVVGLGAATL-AV--KDGDTLILD 222 (574)
T ss_pred CCCCeEEEE------CCCCHHHHhhcCHhhceeeEecCCC-cccHHHHHHHhcCCCeeecCcHHhh-cc--cCCCEEEEE
Confidence 355788887 34442 89999997766 8899999999999998887666532 22 389999998
Q ss_pred EcCCceEEeecC
Q 001268 932 LKSTNLIISDIS 943 (1112)
Q Consensus 932 vss~~V~l~~~~ 943 (1112)
...+.|.+.+..
T Consensus 223 g~~G~vi~nP~~ 234 (574)
T COG1080 223 GINGEVIVNPDE 234 (574)
T ss_pred CCCCeEEECcCH
Confidence 888888887754
No 33
>PRK03955 hypothetical protein; Reviewed
Probab=80.54 E-value=6.5 Score=40.16 Aligned_cols=94 Identities=15% Similarity=0.229 Sum_probs=64.0
Q ss_pred eeeeceeEEEEEEEeccccc----ccc--------------ccCCCCeEEEEeCCCCccccC---------C--CceEEE
Q 001268 836 QVISPVEVCGFITSVNELIT----LQN--------------KVYRRPTIIIASRITGEEEIP---------V--GVVAVL 886 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~----vq~--------------~~~~~P~Illv~~v~GdEEIp---------~--~VaGVI 886 (1112)
..+++|.|.|.+.+++.-.. +.+ .++ .-.||++....|- ..- - .=+|+|
T Consensus 6 ~~~~~G~~~Ge~lv~~~~lSf~ggvd~~tG~iid~~h~l~G~si-~gkIlv~p~~kGS-t~gs~vl~~l~~~g~aP~aiI 83 (131)
T PRK03955 6 RIISKGKAEGEVIVSKKPISFLGGVDPETGIVIDKEHDLYGESI-KGKILVFPHGKGS-TVGSYVIYQLAKNGTAPKAII 83 (131)
T ss_pred EEEeccEEEEEEEEeCCCccccccccCCCCEEEecCCCcCCCcc-CCEEEEEeCCCcc-cchHHHHHHHHHcCCCceEEE
Confidence 46899999999988764333 221 111 3478888777664 111 1 225788
Q ss_pred cCCCCCcchhhhhhcccCCceEEEEechHHHHHHHhcCCCcEEEEEcCCceEE
Q 001268 887 TPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLII 939 (1112)
Q Consensus 887 t~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~l~~l~Gk~V~l~vss~~V~l 939 (1112)
..+.-+.|||=++-| +||.+...+ .+.| .+|.+|++..+.+.|.+
T Consensus 84 ~~~~~~ils~GaIvA---gIP~V~~~~---~~~l--~~G~~V~Vdg~~G~V~i 128 (131)
T PRK03955 84 NLEAEPIVATGAIIS---GIPLVDKVD---ISKL--KDGDRVVVDGDEGEVEI 128 (131)
T ss_pred EecCCceeEeeeeec---CCceEcccc---ceec--CCCCEEEEeCCCCEEEE
Confidence 877777999999999 999998766 2322 38999998866665554
No 34
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=79.83 E-value=2.2 Score=52.35 Aligned_cols=80 Identities=18% Similarity=0.158 Sum_probs=57.6
Q ss_pred cccCCCCeEEEEeCCCCcc--ccC-CCceEEEcCCCCCcchhhhhhcccCCceEEEE-echHHHHHHHhcCCCcEEEEEc
Q 001268 858 NKVYRRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATC-FDQNILRNLRLKEGKAVSIRLK 933 (1112)
Q Consensus 858 ~~~~~~P~Illv~~v~GdE--EIp-~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc-~D~~~l~~l~~l~Gk~V~l~vs 933 (1112)
...|.++.|+|++..+.-+ |+| ..++||++.+-. .-||+++.||.+|||-+-- -+-. .+..+|..+-+.--
T Consensus 323 ~~~~pe~aIlVarel~aa~L~e~Pr~rL~GvVl~dGa-anSH~aIvaRAmGIP~V~~a~~i~----~~~~n~~~~IVDG~ 397 (756)
T COG3605 323 ANAWPEDAILVARELGAAELLEYPRDRLRGVVLEDGA-ANSHAAIVARAMGIPTVMGAAGIV----PSVLNGDALIVDGY 397 (756)
T ss_pred hhcCCcceEEEecccCHHHHhhCchhhheeeeeecCc-ccchHHHHHHhcCCceeccccCcc----hhhhcCCcEEEECC
Confidence 4567889999998877655 677 599999997754 7899999999999998754 2222 23356666655544
Q ss_pred CCceEEeec
Q 001268 934 STNLIISDI 942 (1112)
Q Consensus 934 s~~V~l~~~ 942 (1112)
.+.|.+++.
T Consensus 398 ~gev~l~P~ 406 (756)
T COG3605 398 RGEVHLRPE 406 (756)
T ss_pred cceEEeCCc
Confidence 556666553
No 35
>PF11154 DUF2934: Protein of unknown function (DUF2934); InterPro: IPR021327 This bacterial family of proteins has no known function.
Probab=75.45 E-value=2.9 Score=34.17 Aligned_cols=35 Identities=40% Similarity=0.763 Sum_probs=27.4
Q ss_pred hhhHhhhhhhhcccCCCCCCChhhhhHHHHHHHHHHHH
Q 001268 138 KDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQL 175 (1112)
Q Consensus 138 ~~li~~~ay~~WE~~g~p~~~~e~~~~ey~~a~~~l~~ 175 (1112)
++.|...||-.||+.|+|.-.++ +...+|.++|..
T Consensus 5 e~~Ir~rAY~lwe~~G~p~G~~~---~~W~~AE~el~~ 39 (40)
T PF11154_consen 5 EERIRERAYELWEERGRPEGRDE---EDWLEAERELDA 39 (40)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcH---HHHHHHHHHHHc
Confidence 56788999999999999976654 566777777653
No 36
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=62.00 E-value=3.5 Score=52.92 Aligned_cols=110 Identities=20% Similarity=0.212 Sum_probs=72.6
Q ss_pred chhhccchHHHHhhhhhHHHHHHHHhhhHHHHHHhcCCCceeeeceeEEEEEEEeccccccccccCCCCeEEEEeCCCCc
Q 001268 796 KYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGE 875 (1112)
Q Consensus 796 ~~~v~~F~Ee~IRas~~f~lS~ll~~L~~~lR~~agl~~wqvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~Gd 875 (1112)
+|+++- .+-.+|+.|.-..+.+-...++ -+.. ..++. .+||.+.|.++.+....+. ......+||+....+.
T Consensus 305 Ew~id~-~~~ilq~rP~t~~~~~~~~~~~-~~~~--~~g~g-a~~g~~~G~v~~~~d~~e~--~~~~~g~iLv~~~t~p- 376 (740)
T COG0574 305 EWAIDG-KLYILQARPETVLSLLHPVEDR-GRAL--LKGIG-ASPGIASGRVKIILDVSEM--EKLEHGDILVTPMTDP- 376 (740)
T ss_pred hhhhcC-ceEEEEecCccccccccccccc-ccce--eeeee-ccCCceeEEEEEEecHHHh--cccccCceEEeecCCH-
Confidence 344443 5567888888777777766666 1111 11222 8999999999887766655 2333567888776653
Q ss_pred cccC-C-CceEEEcCCCCCcchhhhhhcccCCceEEEEech
Q 001268 876 EEIP-V-GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQ 914 (1112)
Q Consensus 876 EEIp-~-~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D~ 914 (1112)
+.+| . .-.||+|.+-+ ..||-+|.||.+|+|-+.--..
T Consensus 377 d~~~~m~~a~~Ivt~~Gg-~tshaaivaRe~g~Pavvg~~~ 416 (740)
T COG0574 377 DWVPLMKVAGAIVTDRGG-MTSHAAIVARELGIPAVVGTGS 416 (740)
T ss_pred HHhhhhhhccceEEcCCC-ccccchhhhhhcCCCeEEcCch
Confidence 3555 2 44477766655 9999999999999996554333
No 37
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=30.89 E-value=56 Score=36.64 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=22.5
Q ss_pred ChhhHHHHhhhC-CCChhhhhcCCCCc
Q 001268 554 KIDAYWQTLNCH-GLSKQKLASYDRPI 579 (1112)
Q Consensus 554 ~~~~yW~~L~~~-Git~erl~s~dr~i 579 (1112)
|.=++|..+-+. |+|+|++.|++ |.
T Consensus 92 ~hidlwlr~aeAlGvs~eei~s~e-pl 117 (242)
T COG5424 92 NHIDLWLRLAEALGVSREEILSHE-PL 117 (242)
T ss_pred cHHHHHHHHHHHcCCCHHHHhhcC-CC
Confidence 667899999996 99999999999 76
No 38
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=23.47 E-value=2.4e+02 Score=31.83 Aligned_cols=87 Identities=18% Similarity=0.383 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHccCCCcHHHHHHHHhhcCCCCCCCCch-hhhHHHHHHH---------hhcCCCcc---------hHHHH
Q 001268 466 DRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQ-RIRDEILVIQ---------RNNGCKTG---------MMEEW 526 (1112)
Q Consensus 466 ~~lt~~l~~~~~~~p~~R~~~R~~l~t~~RGG~g~~Gq-~IRd~IL~I~---------r~n~~kgg---------~~eeW 526 (1112)
+||+..+...-.+.|+...+++.++.=- +.|+.-.|+ ++..-|=.+. ++|=+.|+ ++++|
T Consensus 53 ~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~ 131 (260)
T PF04190_consen 53 ARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEW 131 (260)
T ss_dssp HHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 6777777777778888888888887766 666666777 4444332222 22212222 56788
Q ss_pred HhhhcCCCCCChHHHHHHHHHHHHhCCChh
Q 001268 527 HQKLHNNTSPDDIIICEALLNYIRCGFKID 556 (1112)
Q Consensus 527 HQKLHnNTtPDDv~ICea~l~~l~s~~~~~ 556 (1112)
-++ ...+-.|+.|++|.|.||-.+ |+.
T Consensus 132 ~~~--~~~~e~dlfi~RaVL~yL~l~-n~~ 158 (260)
T PF04190_consen 132 STK--GYPSEADLFIARAVLQYLCLG-NLR 158 (260)
T ss_dssp HHH--TSS--HHHHHHHHHHHHHHTT-BHH
T ss_pred HHh--cCCcchhHHHHHHHHHHHHhc-CHH
Confidence 776 556666999999999999988 643
No 39
>KOG2435 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.86 E-value=3.3e+02 Score=31.23 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=57.2
Q ss_pred eEEEEEEEeeCCceEEEEEecCCCC----eEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeecc-cCCCceeeE
Q 001268 264 HEIVVLSKIISSDYHILVAVNMKGA----AILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDI-ATARGSFQM 338 (1112)
Q Consensus 264 ~ei~V~v~~~~g~~~V~v~td~~~~----lvLHWGv~~~~~~eW~~PP~~~~P~~S~~~~~A~eT~f~~~-~~~~~~~~~ 338 (1112)
+.|..+|+.+|..|.+.|-|+.--+ =..|.-+-.+++.-|. +...||.+. .+..+..|-
T Consensus 202 n~L~LrvRGDGRsy~inihte~~~dq~wndsys~flft~gGp~wq----------------~~KIPfSKff~t~kGriqD 265 (323)
T KOG2435|consen 202 NTLYLRVRGDGRSYMINIHTETDFDQRWNDSYSYFLFTRGGPYWQ----------------EVKIPFSKFFFTNKGRIQD 265 (323)
T ss_pred ceEEEEEecCCceEEEEecCccchhhhcccceeeEEecCCCCcee----------------EEecchhhheeccccceee
Confidence 6688999999999999996654322 2333333333444442 344677764 233455666
Q ss_pred EEEEccCCceeEEEEEEecCCcccccCCcceEEecC
Q 001268 339 VDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLH 374 (1112)
Q Consensus 339 lei~l~~~~~~gi~FVLk~~~~W~k~~G~DF~V~l~ 374 (1112)
.+-+++-+..++|-|+|-+. .+++|++.+.
T Consensus 266 rq~e~nl~~vssig~sl~dk------~dGpF~LEID 295 (323)
T KOG2435|consen 266 RQHELNLDKVSSIGFSLADK------VDGPFFLEID 295 (323)
T ss_pred cccccCccceeeEeEEEeec------cCCcceeeEE
Confidence 66677778899999999653 5677766554
No 40
>KOG3021 consensus Predicted kinase [General function prediction only]
Probab=20.16 E-value=84 Score=35.36 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcHHHHHHHHhhcCCCCCCCCchhhh
Q 001268 460 EISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIR 506 (1112)
Q Consensus 460 ~~a~aq~~lt~~l~~~~~~~p~~R~~~R~~l~t~~RGG~g~~Gq~IR 506 (1112)
.+++-|..|...||+.+..+...++..|-=..||||||+ .|.+|-
T Consensus 94 ~lr~~~a~lG~qlAdmHl~n~kl~e~r~~~~~tv~rgge--~~e~~~ 138 (313)
T KOG3021|consen 94 GLRSDAAKLGSQLADMHLKNEKLAEARRTEAGTVGRGGE--EGEQIG 138 (313)
T ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHhccccccCcc--cccccc
Confidence 345667889999999998889999988888999999998 566553
Done!