Query 001268
Match_columns 1112
No_of_seqs 251 out of 928
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 19:26:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ols_A Phosphoenolpyruvate syn 99.7 1.9E-17 6.4E-22 204.9 10.5 137 969-1108 2-176 (794)
2 1vbg_A Pyruvate,orthophosphate 99.5 1.4E-14 4.8E-19 180.0 4.1 135 970-1108 3-229 (876)
3 1kbl_A PPDK, pyruvate phosphat 99.4 2.7E-14 9.4E-19 177.3 0.1 134 971-1108 2-225 (873)
4 2x0s_A Pyruvate phosphate diki 99.2 6.4E-12 2.2E-16 157.5 9.0 60 970-1032 4-71 (913)
5 1h6z_A Pyruvate phosphate diki 99.1 6.3E-12 2.1E-16 156.2 -1.1 134 970-1107 4-230 (913)
6 3t05_A Pyruvate kinase, PK; te 96.1 0.01 3.5E-07 71.6 8.7 96 836-937 501-598 (606)
7 2e28_A Pyruvate kinase, PK; al 95.7 0.006 2.1E-07 73.5 4.4 99 836-940 482-582 (587)
8 1zym_A Enzyme I; phosphotransf 95.5 0.0092 3.2E-07 65.1 4.7 79 860-943 151-233 (258)
9 2ols_A Phosphoenolpyruvate syn 95.5 0.0045 1.6E-07 77.2 2.5 100 836-942 364-468 (794)
10 1vbg_A Pyruvate,orthophosphate 94.9 0.0082 2.8E-07 75.4 2.1 103 836-943 399-514 (876)
11 1h6z_A Pyruvate phosphate diki 94.8 0.025 8.7E-07 71.1 6.1 101 836-941 424-535 (913)
12 1kbl_A PPDK, pyruvate phosphat 94.6 0.0086 2.9E-07 75.2 1.5 102 836-942 395-509 (873)
13 2c3v_A Alpha-amylase G-6; carb 94.4 0.094 3.2E-06 49.7 7.6 65 287-373 21-86 (102)
14 2wqd_A Phosphoenolpyruvate-pro 93.0 0.48 1.7E-05 57.1 12.2 78 861-943 154-235 (572)
15 2hwg_A Phosphoenolpyruvate-pro 92.3 0.45 1.5E-05 57.4 10.8 77 861-943 152-233 (575)
16 2c3v_A Alpha-amylase G-6; carb 91.8 0.33 1.1E-05 46.0 7.0 77 33-123 9-85 (102)
17 2laa_A Beta/alpha-amylase; SBD 91.6 0.39 1.3E-05 45.6 7.3 68 285-374 14-82 (104)
18 2x0s_A Pyruvate phosphate diki 88.6 0.33 1.1E-05 61.5 5.3 74 836-913 424-501 (913)
19 2laa_A Beta/alpha-amylase; SBD 86.2 1.8 6.2E-05 41.1 7.6 68 43-124 12-81 (104)
20 2hi6_A UPF0107 protein AF0055; 35.5 1.2E+02 0.0042 30.1 8.5 101 836-943 7-135 (141)
21 1xkm_B Distinctin chain B; por 26.7 19 0.00066 25.2 0.7 13 522-534 12-24 (26)
No 1
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=99.70 E-value=1.9e-17 Score=204.92 Aligned_cols=137 Identities=17% Similarity=0.247 Sum_probs=115.5
Q ss_pred CCcceeeCCC---cCCCCCCHHhhHHHHhHhhCC-CCCCCCCceeeCHHHHHHHHHhcccchHHHHHHHHHhhcCCCCHH
Q 001268 969 RGKYAVSVED---FTPDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLS 1044 (1112)
Q Consensus 969 ~g~~Vl~l~e---~d~~lVGgKAANLGeL~~~lp-ag~~VP~GFaIPfgAye~fL~~~~n~~L~~~I~~L~a~ld~~D~~ 1044 (1112)
+++||++|++ .+..++|||+||||+|.++++ .|++||+||||||.+|+.|++.+ +|.+.|.+.++.++..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~vGGK~anL~em~~~L~~~GlpVP~GF~Itt~a~~~fl~~~---~l~~~i~~~l~~l~~~~~~ 78 (794)
T 2ols_A 2 ADNYVIWFENLRMTDVERVGGKNASLGEMISQLTEKGVRVPGGFATTAEAYRAFLAHN---GLSERISAALAKLDVEDVA 78 (794)
T ss_dssp --CCEEEGGGCCGGGHHHHHHHHHHHHHHHHHHGGGTCCCCCEEEECHHHHHHHHTGG---GHHHHHHHHHHSCCTTSHH
T ss_pred CCCEEEECCcCChhhcccCCHHHHHHHHHHHHHhhCCCCCCCEEEECHHHHHHHHHhC---ChHHHHHHHHHhhcccCHH
Confidence 3578999875 567899999999999987543 49999999999999999999998 7999999998989888876
Q ss_pred HH----HHHHHHHHcCCCCHHHHHHHHHHHHhcC-----CC-------------C-----CCC-------ccHHHHHHHH
Q 001268 1045 KL----QEIQEAVLQMSAPLSLIYELKNKMRSSG-----MP-------------W-----PGD-------EGWNLAWRSI 1090 (1112)
Q Consensus 1045 ~L----~~IRelI~~~~lP~eL~~eL~~A~~~lg-----~~-------------~-----ped-------~g~e~ll~AI 1090 (1112)
.| +++|++|.++++|+++.++|.++|.+++ .. . +|+ .|++++++||
T Consensus 79 ~l~~~~~~ir~~I~~~~~p~~l~~~i~~a~~~l~~~~g~~~~~vaVRSSa~~EDl~~~sfAG~~~t~l~v~g~~~l~~Ai 158 (794)
T 2ols_A 79 ELARVGKEIRQWILDTPFPEQLDAEIEAAWNKMVADAGGADISVAVRSSATAEDLPDASFAGQQETFLNINGLDNVKEAM 158 (794)
T ss_dssp HHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTSSCCCCEEEEEEECC-------CCSCSCEEEEECSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccccccCceEEEecCCChhhhhhhhhhhhhhhhhcCCCHHHHHHHH
Confidence 65 8899999999999999999999998752 11 1 122 1599999999
Q ss_pred hhhcccCCchhHHhcchh
Q 001268 1091 KKVLKFKSAHFSYHNLDD 1108 (1112)
Q Consensus 1091 K~VWASlyneRAi~s~~~ 1108 (1112)
|+||||+||+||+.-|+.
T Consensus 159 k~v~aS~~s~RAi~YR~~ 176 (794)
T 2ols_A 159 HHVFASLYNDRAISYRVH 176 (794)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 999999999999987654
No 2
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=99.46 E-value=1.4e-14 Score=179.97 Aligned_cols=135 Identities=14% Similarity=0.184 Sum_probs=100.0
Q ss_pred CcceeeC----CC---cCCCCCCHHhhHHHHhHhhCCCCCCCCCceeeCHHHHHHHHHhcc--cchHHHHHHHHHhhcC-
Q 001268 970 GKYAVSV----ED---FTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFIN- 1039 (1112)
Q Consensus 970 g~~Vl~l----~e---~d~~lVGgKAANLGeL~~~lpag~~VP~GFaIPfgAye~fL~~~~--n~~L~~~I~~L~a~ld- 1039 (1112)
.+||++| ++ .+.+++|||+||||+|++ .|+|||+||||||.+|++|++.+. ..+|.++|...++.++
T Consensus 3 ~~~v~~f~~~~~~~~~~~~~~vGGKganL~em~~---~glpVP~GF~Itt~a~~~~~~~~~~~~~~l~~~i~~~l~~le~ 79 (876)
T 1vbg_A 3 KKRVFHFGKGKSEGNKTMKELLGGKGANLAEMAS---IGLSVPPGFTVSTEACQQYQDAGCALPAGLWAEIVDGLQWVEE 79 (876)
T ss_dssp CCSEEEEETTEESSCTTCTTTTHHHHHHHHHHHH---TTCCCCCEEEECHHHHHHHHHTTSCCCTTHHHHHHHHHHHHHH
T ss_pred CcEEEECCccccccCccccccCcHHHHHHHHHHH---CCCCCCCeEEECHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 4688888 43 578999999999999998 499999999999999999999873 3456666655554432
Q ss_pred -----CCCHHH-------------HHHHHHHHHcCCCCHHHHHHHHHH---------HHhc-------------------
Q 001268 1040 -----GGDLSK-------------LQEIQEAVLQMSAPLSLIYELKNK---------MRSS------------------- 1073 (1112)
Q Consensus 1040 -----~~D~~~-------------L~~IRelI~~~~lP~eL~~eL~~A---------~~~l------------------- 1073 (1112)
-+|.+. +..++++|+++++|++++++|.++ |+++
T Consensus 80 ~~~~~~gd~~~plllsvrs~a~~smpgm~~tIln~~lpd~~~~~l~~~~~~~fA~d~yrr~~q~~~~~~~~vr~~~f~~~ 159 (876)
T 1vbg_A 80 YMGATLGDPQRPLLLSVRSGAAVSMPGMMDTVLNLGLNDEVAAGLAAKSGERFAYDSFRRFLDMFGNVVMDIPRSLFEEK 159 (876)
T ss_dssp HHTCBTTCSSSBCCEEEECCCSSCCTTCCCCEEEETCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred hhccccCCCcccccceecccccccchhHHHHHHcCCCCHHHHHHHHHhhccchHHHHHHHHHhhccceeeecChhhHHHH
Confidence 122211 135688999999999999999863 4331
Q ss_pred ------------------------------------CCCCCCCccHHHHHHHHhhhcccCCchhHHhcchh
Q 001268 1074 ------------------------------------GMPWPGDEGWNLAWRSIKKVLKFKSAHFSYHNLDD 1108 (1112)
Q Consensus 1074 ------------------------------------g~~~ped~g~e~ll~AIK~VWASlyneRAi~s~~~ 1108 (1112)
|.+.|.|. +++++.|||.||||+||+||+.-|+.
T Consensus 160 ~~~~~~~~~v~~~ss~taEDl~~~~~sf~~~y~~~~g~~fp~d~-~~qL~~Ai~~v~aS~~~~RAi~YR~~ 229 (876)
T 1vbg_A 160 LEHMKESKGLKNDTDLTASDLKELVGQYKEVYLSAKGEPFPSDP-KKQLELAVLAVFNSWESPRAKKYRSI 229 (876)
T ss_dssp HHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHSSCCCCCH-HHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHhcCccccccCCHHHHHHHHHHHHHHHHHhcCCCCCCCh-HHHHHHHHHHHHhccCCHHHHHHHHh
Confidence 11112222 58999999999999999999976653
No 3
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=99.39 E-value=2.7e-14 Score=177.32 Aligned_cols=134 Identities=14% Similarity=0.235 Sum_probs=96.7
Q ss_pred cceeeCCC---cCCCCCCHHhhHHHHhHhhCCCCCCCCCceeeCHHHHHHHHHhcc--cchHHHHHHHHHhhcCC-----
Q 001268 971 KYAVSVED---FTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFING----- 1040 (1112)
Q Consensus 971 ~~Vl~l~e---~d~~lVGgKAANLGeL~~~lpag~~VP~GFaIPfgAye~fL~~~~--n~~L~~~I~~L~a~ld~----- 1040 (1112)
+||+++++ .+.+++|||+||||+|++ .|+|||+||+|||.+|++|+++++ .++|.++|...++.++.
T Consensus 2 ~~v~~f~~~~~~~~~~vGGKganL~em~~---~glpVP~GF~ITt~a~~~~~~~~~~~p~~l~~~i~~~l~~le~~~~~~ 78 (873)
T 1kbl_A 2 KWVYKFEEGNASMRNLLGGKGCNLAEMTI---LGMPIPQGFTVTTEACTEYYNSGKQITQEIQDQIFEAITWLEELNGKK 78 (873)
T ss_dssp CCEEEGGGCCGGGHHHHHHHHHHHHHHHH---TTCCCCCEEEECHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTSC
T ss_pred CeEEECcCCChhhhhhCcHHHHHHHHHHh---CCCCCCCEEEEcHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhccc
Confidence 57888875 457889999999999998 499999999999999999999873 23566666655544321
Q ss_pred -CC---HHHH----------HHHHHHHHcCCCCHHHHHHHHH----------HHHh------------------------
Q 001268 1041 -GD---LSKL----------QEIQEAVLQMSAPLSLIYELKN----------KMRS------------------------ 1072 (1112)
Q Consensus 1041 -~D---~~~L----------~~IRelI~~~~lP~eL~~eL~~----------A~~~------------------------ 1072 (1112)
+| +..+ .-+++.|+++.+|++++++|.+ +|++
T Consensus 79 fg~~~~pl~lsvRS~a~~SmpGm~dtiLn~~l~d~~~~~l~~~~g~~~fa~d~yrr~~~~~~~v~~~v~~~~f~~~~~~~ 158 (873)
T 1kbl_A 79 FGDTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEGFAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAM 158 (873)
T ss_dssp BTCSSSCBCEEEEEECSSCCTTSSCEEEEETCCTTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred cCCCCCchhHHHhhccccccccHHHHHHcCCCCHHHHHHHHHhhCCchHHHHHHHHHHhccCCceeeccchhHHHHHHHH
Confidence 11 1111 2236678888888888888874 2221
Q ss_pred --------------------------------cCCCCCCCccHHHHHHHHhhhcccCCchhHHhcchh
Q 001268 1073 --------------------------------SGMPWPGDEGWNLAWRSIKKVLKFKSAHFSYHNLDD 1108 (1112)
Q Consensus 1073 --------------------------------lg~~~ped~g~e~ll~AIK~VWASlyneRAi~s~~~ 1108 (1112)
.|.++|.|. +++++.|||.||||+||+||+.-|+.
T Consensus 159 ~~~~~v~~ds~~taedl~~~~~~~~~~~~~~~~g~~fp~dp-~eqL~~Aik~V~aS~~~~RAi~YR~~ 225 (873)
T 1kbl_A 159 KEEKGVHFDTDLTADDLKELAEKFKAVYKEAMNGEEFPQEP-KDQLMGAVKAVFRSWDNPRAIVYRRM 225 (873)
T ss_dssp HHHTCCCSGGGCCHHHHHHHHHHHHHHHHTTTTTCCCCCCH-HHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHhcCcCccCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccH-HHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 122223332 79999999999999999999976653
No 4
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=99.25 E-value=6.4e-12 Score=157.53 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=48.1
Q ss_pred CcceeeCC----C---cCCCCCCHHhhHHHHhHhhCCCCCCCCCceeeCHHHHHHHHHhcc-cchHHHHHH
Q 001268 970 GKYAVSVE----D---FTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI-NKDIANKIS 1032 (1112)
Q Consensus 970 g~~Vl~l~----e---~d~~lVGgKAANLGeL~~~lpag~~VP~GFaIPfgAye~fL~~~~-n~~L~~~I~ 1032 (1112)
.+||..|. + .+.++||||+||||||.+ .|+|||+|||||+.||++|++.++ .+.|.+.|.
T Consensus 4 ~k~vy~F~~~~~e~~~~~~~LvGGKgAnLgEM~~---~GlpVP~GF~iTt~Ay~~fl~~~~l~~~i~~~l~ 71 (913)
T 2x0s_A 4 KKWVYYFGGGNADGNKNMKELLGGKGANLAEMVN---LGIPVPPGFTITTEACKTYQETETIPQEVADQVR 71 (913)
T ss_dssp CCCEEEECSSSCSSCTTCHHHHHHHHHHHHHHHH---TTCCCCCEEEECHHHHHHHHTSSCCCHHHHHHHH
T ss_pred CcEEEECCCCCccCCcchhhhCcHHHHHHHHHHH---CcCCCCCCEeehHHHHHHHHHcCCCcHHHHHHHH
Confidence 36788874 2 346789999999999987 499999999999999999999875 344554443
No 5
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=99.10 E-value=6.3e-12 Score=156.17 Aligned_cols=134 Identities=15% Similarity=0.217 Sum_probs=90.4
Q ss_pred CcceeeCCC-------cCCCCCCHHhhHHHHhHhhCCCCCCCCCceeeCHHHHHHHHHhcc-cchHHHHHHHHHhhc---
Q 001268 970 GKYAVSVED-------FTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI-NKDIANKISRLYKFI--- 1038 (1112)
Q Consensus 970 g~~Vl~l~e-------~d~~lVGgKAANLGeL~~~lpag~~VP~GFaIPfgAye~fL~~~~-n~~L~~~I~~L~a~l--- 1038 (1112)
.+||.+|.+ .+.+++|||+|||+||.+ .|+|||+||+|||.+|.+|++.+. .++|.++|...++.+
T Consensus 4 ~k~v~~f~~~~~~~~~~~~~llGgKganL~em~~---lglpVPpGF~Itteac~~~~~~~~~~~~l~~~i~~~l~~le~~ 80 (913)
T 1h6z_A 4 KKWVYYFGGGNADGNKNMKELLGGKGANLAEMVN---LGIPVPPGFTITTEACKTYQETETIPQEVADQVRENVSRVEKE 80 (913)
T ss_dssp CCCEEEECSSSCSCCTTCHHHHHHHHHHHHHHHH---TTCCCCCEEEECHHHHTTTTTSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCcccCChhhHhhcChHhhhHHHHHH---CCCCCCCcEEeeHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 467888864 346889999999999998 399999999999999999997652 234544444443322
Q ss_pred -CC--CCHH-------------HHHHHHHHHHcCCCCHHHHHH-HH----------HHHHhc---------CC-------
Q 001268 1039 -NG--GDLS-------------KLQEIQEAVLQMSAPLSLIYE-LK----------NKMRSS---------GM------- 1075 (1112)
Q Consensus 1039 -d~--~D~~-------------~L~~IRelI~~~~lP~eL~~e-L~----------~A~~~l---------g~------- 1075 (1112)
.. +|.+ ..--+++.|+++.+++++++. |. ++|+++ |+
T Consensus 81 ~g~~fg~~~~PLLvsvrsga~~smpGmmdtilnlGlnd~~~~~~la~~~g~~~fa~d~Yrrfiq~~~~vv~~v~~~~fe~ 160 (913)
T 1h6z_A 81 MGAKFGDPANPLLFSVRSGAAASMPGMMDTVLNLGLNKVTVDAWVRRAPRLERFVYDSYRRFITMYADIVMQVGREDFEE 160 (913)
T ss_dssp HCCBTTCTTSBCCEEEEESCTTC-----CCCCSBSCCHHHHHHHGGGCGGGHHHHHHHHHHHHHHHHHHHHCCCSTTTST
T ss_pred hCcccCCCCCccceeeecccccccchHHHHHHhcCCCHHHHHHHHHHhcCChhHHHHHHHHHHHHhchhhcCCCHHHHHH
Confidence 21 2211 113377888888888888888 51 233321 11
Q ss_pred ---------------------------------------CCCCCccHHHHHHHHhhhcccCCchhHHhcch
Q 001268 1076 ---------------------------------------PWPGDEGWNLAWRSIKKVLKFKSAHFSYHNLD 1107 (1112)
Q Consensus 1076 ---------------------------------------~~ped~g~e~ll~AIK~VWASlyneRAi~s~~ 1107 (1112)
++|.|. .++++.|||.||||+||+||+.=|+
T Consensus 161 ~~~~~k~~~g~~~d~~~~a~dl~~~~~~yk~~~~~~~g~~fp~dp-~eqL~~AI~~v~aS~~s~RAi~YR~ 230 (913)
T 1h6z_A 161 ALSRMKERRGTKFDTDLTASDLKELCDGYLELFELKTGCSFPQDP-VMQLFAAIKAVFRSWGNPRATIYRR 230 (913)
T ss_dssp TTHHHHHHHSCSCGGGCCHHHHHHHHHTTHHHHHHHSSSCCCCCH-HHHHHHHHHHHHHTTTCTTTTTHHH
T ss_pred HHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHHHHHhCCCCCcCH-HHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 122222 8899999999999999999986554
No 6
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=96.08 E-value=0.01 Score=71.63 Aligned_cols=96 Identities=14% Similarity=0.170 Sum_probs=70.0
Q ss_pred eeeeceeEEEEEEEeccccccccccCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEEEec
Q 001268 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1112)
+.++||.+.|+++++.+..+.. ..+.++.|||++..+-. +++ ..+.||||..-+ ..||.++.||++|||-+.--.
T Consensus 501 ~~i~~G~v~G~v~vv~~~~da~-~~~~~g~ILVa~~l~Ps-~~~~l~~v~GiVte~Gg-~tSHaAIlAR~lgIPaVvG~~ 577 (606)
T 3t05_A 501 QGIGRGSVVGTTLVAETVKDLE-GKDLSDKVIVTNSIDET-FVPYVEKALGLITEENG-ITSPSAIVGLEKGIPTVVGVE 577 (606)
T ss_dssp EEESSCEEEEEEEECSSGGGGS-SSCCSSEEEEESCCCTT-THHHHTTSSEEEESSCC-SSSHHHHHHHHTTCCEEECCT
T ss_pred cccccceEEEEEEEECChHHHh-hcCCCCeEEEECCCCHH-HHHHHHhhEEEEecCCC-cccHHHHHHhhCCCCEEEecc
Confidence 4589999999999999877632 23567899999876533 343 589999998776 899999999999999666533
Q ss_pred hHHHHHHHhcCCCcEEEEEcCCce
Q 001268 914 QNILRNLRLKEGKAVSIRLKSTNL 937 (1112)
Q Consensus 914 ~~~l~~l~~l~Gk~V~l~vss~~V 937 (1112)
.. .. .-.+|+.|.+....+.|
T Consensus 578 ~a-~~--~l~~G~~V~vDg~~G~V 598 (606)
T 3t05_A 578 KA-VK--NISNNVLVTIDAAQGKI 598 (606)
T ss_dssp TH-HH--HSCSSCEEEEETTTTEE
T ss_pred cH-Hh--hCCCCCEEEEECCCCEE
Confidence 22 11 22489988876654433
No 7
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=95.67 E-value=0.006 Score=73.55 Aligned_cols=99 Identities=11% Similarity=0.116 Sum_probs=71.8
Q ss_pred eeeeceeEEEEEEEeccccccccccCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEEEec
Q 001268 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1112)
.+++||.+.|+++++....+.. ..+.+|.|||+...+-. ++| ..+.||||..-+ ..||.++.||++|||-+.--.
T Consensus 482 ~~~~~g~~~G~v~v~~~~~~~~-~~~~~g~ILVa~~l~Ps-~~~~l~~~~Givt~~Gg-~tSHaAIlAR~lgIPaVvG~~ 558 (587)
T 2e28_A 482 QGIGRKSAFGKAVVAKTAEEAR-QKMVDGGILVTVSTDAD-MMPAIEKAAAIITEEGG-LTSHAAVVGLSLGIPVIVGVE 558 (587)
T ss_dssp EEESSCEECCBEEECSSHHHHH-HHCCTTCEEEESCCCGG-GHHHHTTCSEEEESSCC-TTSHHHHHHHHHTCCEEECCT
T ss_pred ccccCCeEEeeEEEeCCHHHHh-hcCCCCeEEEECCCCHH-HHHHHHhcEEEEEcCCC-CcCHHHHHHHHcCCCEEEecc
Confidence 6689999999999998765422 13466899999776532 343 599999997766 899999999999999666432
Q ss_pred hHHHHHHHhcCCCcEEEEEcCCceEEe
Q 001268 914 QNILRNLRLKEGKAVSIRLKSTNLIIS 940 (1112)
Q Consensus 914 ~~~l~~l~~l~Gk~V~l~vss~~V~l~ 940 (1112)
.. ... -.+|+.|.+....+.|.+.
T Consensus 559 ~~-~~~--l~~G~~v~vDg~~G~V~~~ 582 (587)
T 2e28_A 559 NA-TTL--FKDGQEITVDGGFGAVYRG 582 (587)
T ss_dssp TH-HHH--SCTTCBEEEETTTTEEEES
T ss_pred cH-HHh--CCCCCEEEEECCCCEEEEc
Confidence 21 222 2479999887666556553
No 8
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=95.50 E-value=0.0092 Score=65.08 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=54.8
Q ss_pred cCCCCeEEEEeCCCCccccC----CCceEEEcCCCCCcchhhhhhcccCCceEEEEechHHHHHHHhcCCCcEEEEEcCC
Q 001268 860 VYRRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKST 935 (1112)
Q Consensus 860 ~~~~P~Illv~~v~GdEEIp----~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~l~~l~Gk~V~l~vss~ 935 (1112)
.+.+|.|||+...+- .+++ ..|.||||..-+ ..||.++.||.+|||-+.--... ... -.+|..|.+....+
T Consensus 151 ~~~~~~ILVa~~l~P-s~~~~l~~~~~~givt~~Gg-~tSH~AIlAR~lgIPavvg~~~~-~~~--~~~G~~v~vDg~~G 225 (258)
T 1zym_A 151 AIQDEVILVAADLTP-SETAQLNLKKVLGFITDAGG-RTSHTSIMARSLELPAIVGTGSV-TSQ--VKNDDYLILDAVNN 225 (258)
T ss_dssp GCCSCEEEECSCCCH-HHHHHSCGGGEEEEECSCCC-SSSHHHHHHHHHTCCEECCCSCH-HHH--CCTTCEEEECCSSC
T ss_pred CCCCCeEEEECCCCH-HHHHhhchhhcEEEEEcCCC-cccHHHHHHHHcCCCEEEechhH-HHh--CCCCCEEEEECCCC
Confidence 356788888865542 2232 279999997655 89999999999999966532221 222 24799998887777
Q ss_pred ceEEeecC
Q 001268 936 NLIISDIS 943 (1112)
Q Consensus 936 ~V~l~~~~ 943 (1112)
.|.+.+..
T Consensus 226 ~v~~~p~~ 233 (258)
T 1zym_A 226 QVYVNPTN 233 (258)
T ss_dssp CEEESCCH
T ss_pred eEEECcCH
Confidence 78776643
No 9
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=95.48 E-value=0.0045 Score=77.19 Aligned_cols=100 Identities=13% Similarity=0.112 Sum_probs=58.0
Q ss_pred eeeeceeEEEEEEEeccccccccccCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEEEec
Q 001268 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1112)
..++||.+.|++++|.+..+.. .+.++.|||+...+= +++| ..+.||||..-+ ..||.+|.||++|||-+.--.
T Consensus 364 ~~~~~g~~~G~v~~~~~~~~~~--~~~~g~ILv~~~~~p-~~~~~~~~~~givt~~Gg-~tSHaAivar~~giP~vvg~~ 439 (794)
T 2ols_A 364 RAIGQKVGQGKVRLIKDASEMD--SVEAGDVLVTDMTDP-DWEPVMKRASAIVTNRGG-RTCHAAIIARELGIPAVVGCG 439 (794)
T ss_dssp BC--CCCCCBCBC----------------CEEEESCCCG-GGSHHHHTCSEEEESSCC-TTCHHHHHTTC---CEEECCT
T ss_pred cccCCCcceEEEEEecCHHHHH--hcCCCeEEEECCCCH-HHHHHHhhCcEEEEcCCC-cccHHHHHHhHCCCCEEEcCc
Confidence 4579999999999887776643 345678998876653 4565 489999998765 999999999999999665433
Q ss_pred hHHHHHHHhcCCCcEEE---EEcCCceEEeec
Q 001268 914 QNILRNLRLKEGKAVSI---RLKSTNLIISDI 942 (1112)
Q Consensus 914 ~~~l~~l~~l~Gk~V~l---~vss~~V~l~~~ 942 (1112)
.. ... -.+|+.|.+ ..+.+.|...+.
T Consensus 440 ~~-~~~--~~~G~~v~v~c~Dg~~G~v~~g~~ 468 (794)
T 2ols_A 440 NA-TEL--LKNGQEVTVSCAEGDTGFIYAGLL 468 (794)
T ss_dssp TH-HHH--SCSSCCEECCCC--CCCBCEECC-
T ss_pred ch-hhc--ccCCCEEEEEecCCCcceEEeCCc
Confidence 21 222 247999999 766666766554
No 10
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=94.86 E-value=0.0082 Score=75.43 Aligned_cols=103 Identities=18% Similarity=0.278 Sum_probs=68.3
Q ss_pred eeeeceeEEEEEEEecccccccc-ccCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEE-E
Q 001268 836 QVISPVEVCGFITSVNELITLQN-KVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFAT-C 911 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~-~~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAt-c 911 (1112)
.+++||.|.|+++. ...+... ....+|+|||+...+ -+++| ..+.||||..-+ ..||.+|.||++|||-++ |
T Consensus 399 ~~as~G~a~G~vv~--~~~~~~~~~~~g~~~ILV~~~t~-P~~~~~~~~a~GivT~~GG-~tSHaAIvAR~lGiP~VvG~ 474 (876)
T 1vbg_A 399 LPASPGAAVGQVVF--TAEDAEAWHSQGKAAILVRAETS-PEDVGGMHAAVGILTERGG-MTSHAAVVARGWGKCCVSGC 474 (876)
T ss_dssp EEEECSEEEEEEES--SHHHHHHHHHTTCCEEEEESCCC-TTSHHHHHHSSEEEESSCC-TTSHHHHHHHHTTCCEEECC
T ss_pred cccCCCeEEEEEEE--CHHHHHHHhhccCCEEEEEcCCC-HHHHHhHhhccEEEECCCC-CccHHHHHHhHcCCCEEEcC
Confidence 45799999999743 2222211 223568899987665 34555 368899998766 899999999999999665 4
Q ss_pred echHHHH--------HHH-hcCCCcEEEEEcCCceEEeecC
Q 001268 912 FDQNILR--------NLR-LKEGKAVSIRLKSTNLIISDIS 943 (1112)
Q Consensus 912 ~D~~~l~--------~l~-~l~Gk~V~l~vss~~V~l~~~~ 943 (1112)
.+.. ++ ... -.+|..|.+.-+.+.|.+.+..
T Consensus 475 ~~~~-~~~~~~~~~~~~~~l~~G~~vtvDG~~G~V~~g~~~ 514 (876)
T 1vbg_A 475 SGIR-VNDAEKLVTIGGHVLREGEWLSLNGSTGEVILGKQP 514 (876)
T ss_dssp TTEE-EEGGGTEEEETTEEEETTCEEEEETTTTEEEESCCC
T ss_pred CCce-eccccceEEeCCeeecCCCEEEEECCCCEEEECCCh
Confidence 3321 00 011 2478888887777677765543
No 11
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=94.75 E-value=0.025 Score=71.14 Aligned_cols=101 Identities=18% Similarity=0.249 Sum_probs=65.1
Q ss_pred eeeeceeEEEEEEEeccccccccc-cCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEE-E
Q 001268 836 QVISPVEVCGFITSVNELITLQNK-VYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFAT-C 911 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~-~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAt-c 911 (1112)
.+++||.|+|+++. ...+.... ...+|.|||+...+ -++++ ..+.||||..-+ ..||.+|.||++|||-++ |
T Consensus 424 ~~aspG~a~G~v~~--~~~~a~~~~~~ge~~ILV~~~t~-P~d~~~m~~a~GIvT~~GG-~TSHaAIvAR~lGiPaVvG~ 499 (913)
T 1h6z_A 424 LAASPGAAVGQVVF--DAESAKEWSGRGKKVIMVRLETS-PEDLAGMDAACGILTARGG-MTSHAAVVARGMGKCCVSGC 499 (913)
T ss_dssp EEEESCEEEEEEES--SHHHHHSTTTTSCCEEEEESSCC-GGGCTTTTTSSEEEESSCC-TTCHHHHHHHHTTCCEEECC
T ss_pred eecCCceEEEEEEE--CHHHHHHHHhcCCCEEEEECCCC-HHHHHhHHhceEEEEcCCC-cccHHHHHHHhcCCCEEECC
Confidence 45899999999753 22322222 24567899987665 45666 478999998776 889999999999999655 4
Q ss_pred echHHHH-------HHHhcCCCcEEEEEcCCceEEee
Q 001268 912 FDQNILR-------NLRLKEGKAVSIRLKSTNLIISD 941 (1112)
Q Consensus 912 ~D~~~l~-------~l~~l~Gk~V~l~vss~~V~l~~ 941 (1112)
.+.. ++ .-.-.+|..|.+..+.+.|.+.+
T Consensus 500 ~~~~-~d~~~~~~~~~~l~~Gd~VtvDG~~G~V~~g~ 535 (913)
T 1h6z_A 500 GDMV-IRGKSFKLNGSVFREGDYITIDGSKGLIYAGK 535 (913)
T ss_dssp TTCE-ESSSCEEETTEEESSCEEEEETTSEEESCCCC
T ss_pred cccc-cccceeccCceEecCCCEEEEECCCCEEEECC
Confidence 3331 00 00123677666644444444433
No 12
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=94.62 E-value=0.0086 Score=75.22 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=67.8
Q ss_pred eeeeceeEEEEEEEecccccccc-ccCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEE-E
Q 001268 836 QVISPVEVCGFITSVNELITLQN-KVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFAT-C 911 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~-~~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAt-c 911 (1112)
.+++||.+.|+++. ...+... ....+|.|||+...+ -++++ ..+.||||..-+ ..||.+|.||++|||-++ |
T Consensus 395 ~~as~G~a~G~vv~--~~~~a~~~~~~g~~~ILV~~~t~-P~~~~~~~~a~GivT~~GG-~tSHaAIvAR~lGiP~VvG~ 470 (873)
T 1kbl_A 395 LPASPGAAAGKVYF--TADEAKAAHEKGERVILVRLETS-PEDIEGMHAAEGILTVRGG-MTSHAAVVARGMGTCCVSGC 470 (873)
T ss_dssp EEEECSEEEEEEES--SHHHHHHHHHTTCCEEEEESSCC-GGGHHHHHHCSEEEESSCC-TTSHHHHHHHHHTCEEEECC
T ss_pred ccccCceEEEEEEE--cHHHHHHhhccCCCEEEEECCCC-HHHHHHHHhccEEEecCCC-CccHHHHHHhHcCCCEEEcC
Confidence 55899999999744 2222211 223567899987665 34555 368899998766 899999999999999665 4
Q ss_pred echHHHH--------HHH-hcCCCcEEEEEcCCceEEeec
Q 001268 912 FDQNILR--------NLR-LKEGKAVSIRLKSTNLIISDI 942 (1112)
Q Consensus 912 ~D~~~l~--------~l~-~l~Gk~V~l~vss~~V~l~~~ 942 (1112)
.+.. ++ ... -.+|..|.+.-+.+.|.+.+.
T Consensus 471 ~~~~-i~~~~~~~~~~~~~l~~G~~vtvDG~~G~V~~g~~ 509 (873)
T 1kbl_A 471 GEIK-INEEAKTFELGGHTFAEGDYISLDGSTGKIYKGDI 509 (873)
T ss_dssp TTCE-EETTTTEEEETTEEEETTCEEEEETTTCEEEESCC
T ss_pred CCce-ecccccEEEeCCeeecCCCEEEEECCCCEEEECCC
Confidence 3321 00 011 247888888777666766554
No 13
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=94.38 E-value=0.094 Score=49.67 Aligned_cols=65 Identities=18% Similarity=0.424 Sum_probs=46.2
Q ss_pred CCeEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeecccCCCceeeEEEEEccCCceeEEEEEEecC-CcccccC
Q 001268 287 GAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSG-GSWIKNN 365 (1112)
Q Consensus 287 ~~lvLHWGv~~~~~~eW~~PP~~~~P~~S~~~~~A~eT~f~~~~~~~~~~~~lei~l~~~~~~gi~FVLk~~-~~W~k~~ 365 (1112)
...-|||++ +.+.|..+|. .+|.+... .+ +...+|+++.. ..|.||++++ ++|-+|+
T Consensus 21 ~~~ylHy~~---~~g~Wt~vpg---------------v~M~~~~~-~G-w~~~TI~~~~~--~~l~~~F~dG~~~WDNN~ 78 (102)
T 2c3v_A 21 THPHIHYSL---NQGAWTTLPG---------------VPLTKSEX-EG-XVKVTIEAEEG--SQLRAAFNNGSGQWDNNQ 78 (102)
T ss_dssp SSCEEEEEE---TTCCBCCTTC---------------EECEECSS-TT-EEEEEECCCTT--CEEEEEEECSSSCEECGG
T ss_pred CcEEEEEeC---CCCCcccCCC---------------cCcccccc-CC-ceEEEEecCCC--ceEEEEEeCCCcccccCC
Confidence 357799995 4479999988 33433211 12 34567777533 5899999997 7999999
Q ss_pred CcceEEec
Q 001268 366 GENFFVGL 373 (1112)
Q Consensus 366 G~DF~V~l 373 (1112)
|.||.++-
T Consensus 79 g~Ny~~~~ 86 (102)
T 2c3v_A 79 GRDYDFSS 86 (102)
T ss_dssp GTCEEEES
T ss_pred CcceEECC
Confidence 99999964
No 14
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=92.97 E-value=0.48 Score=57.07 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=55.2
Q ss_pred CCCCeEEEEeCCCCccccC----CCceEEEcCCCCCcchhhhhhcccCCceEEEEechHHHHHHHhcCCCcEEEEEcCCc
Q 001268 861 YRRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTN 936 (1112)
Q Consensus 861 ~~~P~Illv~~v~GdEEIp----~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~l~~l~Gk~V~l~vss~~ 936 (1112)
+.+|.|||+...+= ++++ ..+.||||..-+ ..||.+|.||++|||-+.--.. .... -.+|..|.+.-+.+.
T Consensus 154 ~~~~~ILVa~~l~P-~~~~~l~~~~~~Givt~~Gg-~tSHaAIvAR~lgIPaVvg~~~-~~~~--~~~G~~v~vDg~~G~ 228 (572)
T 2wqd_A 154 IDESVVIVGNDLTP-SDTAQLNKEFVQGFATNIGG-RTSASAIMSRSLEIPAIVGTKS-ITQE--VKQGDMIIVDGLNGD 228 (572)
T ss_dssp CSCCEEEEESCCCH-HHHTTCCTTTEEEEEESSCC-TTSHHHHHHHHTTCCEEECCSS-HHHH--CCTTCEEEEETTTTE
T ss_pred CCCCEEEEEcCCCH-HHHHhhChhceeEEEEcCCC-cccHHHHHHHHcCCCEEEechh-HHhh--CCCCCEEEEECCCCE
Confidence 45688988876542 3344 259999997665 8999999999999996554222 1222 247999999887777
Q ss_pred eEEeecC
Q 001268 937 LIISDIS 943 (1112)
Q Consensus 937 V~l~~~~ 943 (1112)
|.+.+..
T Consensus 229 V~~~p~~ 235 (572)
T 2wqd_A 229 VIVNPTE 235 (572)
T ss_dssp EEESCCH
T ss_pred EEeCCch
Confidence 7776653
No 15
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=92.29 E-value=0.45 Score=57.37 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=54.9
Q ss_pred CCCCeEEEEeCCCCccccC----CCceEEEcCCCCCcchhhhhhcccCCceEEEE-echHHHHHHHhcCCCcEEEEEcCC
Q 001268 861 YRRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATC-FDQNILRNLRLKEGKAVSIRLKST 935 (1112)
Q Consensus 861 ~~~P~Illv~~v~GdEEIp----~~VaGVIt~~~pd~LSHvaVRARn~gVpfAtc-~D~~~l~~l~~l~Gk~V~l~vss~ 935 (1112)
+.+|.|||+...+= ++++ ..+.||||..-+ ..||.+|.||++|||-+.- .+. ... -.+|..|.+.-+.+
T Consensus 152 ~~~~~ILVa~~l~P-s~~~~l~~~~~~Givt~~Gg-~tSHaAIvAR~lgIPaVvG~~~~--~~~--~~~G~~v~vDg~~G 225 (575)
T 2hwg_A 152 IQDEVILVAADLTP-SETAQLNLKKVLGFITDAGG-RTSHTSIMARSLELPAIVGTGSV--TSQ--VKNDDYLILDAVNN 225 (575)
T ss_dssp CCSCEEEEESCCCH-HHHHTCCTTTEEEEEESSCC-TTSHHHHHHHHTTCCEEECCSCH--HHH--CCTTCEEEEETTTT
T ss_pred CCCCEEEEEcCCCH-HHHHHhCccceeEEEEcCCC-cccHHHHHHHHCCCCEEEcchhH--Hhh--CCCCCEEEEECCCC
Confidence 45688998866542 2333 259999997665 8999999999999995554 332 222 24799999988777
Q ss_pred ceEEeecC
Q 001268 936 NLIISDIS 943 (1112)
Q Consensus 936 ~V~l~~~~ 943 (1112)
.|.+.+..
T Consensus 226 ~V~~~p~~ 233 (575)
T 2hwg_A 226 QVYVNPTN 233 (575)
T ss_dssp EEEESCCH
T ss_pred EEEeCCch
Confidence 77776653
No 16
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=91.81 E-value=0.33 Score=45.95 Aligned_cols=77 Identities=10% Similarity=0.245 Sum_probs=50.6
Q ss_pred CceEEEEEEEeecCCceEEEeeeeecCCCccccCCCCCCCccccccccccccceEEEEEecCCcceeEEEEEEeccccch
Q 001268 33 GRNVRVQFQLRNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRW 112 (1112)
Q Consensus 33 g~~~~v~~~~~~~~~~l~lHWGv~~~~~~~W~~P~~~Pk~~a~~Tpf~~~g~~~~v~i~~~d~~i~ai~Fvl~de~~~~W 112 (1112)
|..+.|-.. ......-|||| .+.+.|..+|.-+ |.+.+....++..|+-++-..|||+++|.. +.|
T Consensus 9 g~~vTvyY~--sg~~~~ylHy~---~~~g~Wt~vpgv~--------M~~~~~~Gw~~~TI~~~~~~~l~~~F~dG~-~~W 74 (102)
T 2c3v_A 9 ATDITIYYK--TGWTHPHIHYS---LNQGAWTTLPGVP--------LTKSEXEGXVKVTIEAEEGSQLRAAFNNGS-GQW 74 (102)
T ss_dssp CCSEEEEEE--CCCSSCEEEEE---ETTCCBCCTTCEE--------CEECSSTTEEEEEECCCTTCEEEEEEECSS-SCE
T ss_pred CCEEEEEEc--CCCCcEEEEEe---CCCCCcccCCCcC--------ccccccCCceEEEEecCCCceEEEEEeCCC-ccc
Confidence 444444444 45677889999 3447998877633 222211112233444444589999999987 899
Q ss_pred hcccCCccccc
Q 001268 113 LRLNHGNFRIE 123 (1112)
Q Consensus 113 ~~~~g~nf~v~ 123 (1112)
-+++|.||.+.
T Consensus 75 DNN~g~Ny~~~ 85 (102)
T 2c3v_A 75 DNNQGRDYDFS 85 (102)
T ss_dssp ECGGGTCEEEE
T ss_pred ccCCCcceEEC
Confidence 99999999985
No 17
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=91.65 E-value=0.39 Score=45.64 Aligned_cols=68 Identities=18% Similarity=0.399 Sum_probs=47.4
Q ss_pred CCCCeEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeecccCCCceeeEEEEEccCCceeEEEEEEecC-Ccccc
Q 001268 285 MKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSG-GSWIK 363 (1112)
Q Consensus 285 ~~~~lvLHWGv~~~~~~eW~~PP~~~~P~~S~~~~~A~eT~f~~~~~~~~~~~~lei~l~~~~~~gi~FVLk~~-~~W~k 363 (1112)
--..+-|||+. +.+.|..+|. .+|.+..- .+ +...+|+|+.. ..|.||++++ ++|-+
T Consensus 14 g~~~vylHyg~---~~g~Wt~~~~---------------v~M~~~~~-~g-w~~~TI~l~~g--~~~~~~F~dG~~~WDN 71 (104)
T 2laa_A 14 GFNSPYIHYRP---AGGSWTAAPG---------------VKMQDAEI-SG-YAKITVDIGSA--SQLEAAFNDGNNNWDS 71 (104)
T ss_dssp SSSSCEEEEEE---TTSCCCSSSC---------------EECEEETT-TT-EEEEEEECTTC--SCEEEEEECSSSCEES
T ss_pred CCCcEEEEEcC---CCCCCCcCCc---------------cccccccC-CC-eEEEEEECCCC--CEEEEEEeCCCCcCcC
Confidence 34568999993 4479999887 23332221 12 44467777543 5789999997 69999
Q ss_pred cCCcceEEecC
Q 001268 364 NNGENFFVGLH 374 (1112)
Q Consensus 364 ~~G~DF~V~l~ 374 (1112)
|+|+||.++..
T Consensus 72 n~g~Nyt~~~g 82 (104)
T 2laa_A 72 NNTKNYSFSTG 82 (104)
T ss_dssp TTTSCEEECSE
T ss_pred CCCccEEecCC
Confidence 99999999764
No 18
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=88.57 E-value=0.33 Score=61.50 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=51.4
Q ss_pred eeeeceeEEEEEEEe-ccccccccccCCCCeEEEEeCCCCccccC--CCceEEEcCCCCCcchhhhhhcccCCceEEE-E
Q 001268 836 QVISPVEVCGFITSV-NELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFAT-C 911 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V-~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VaGVIt~~~pd~LSHvaVRARn~gVpfAt-c 911 (1112)
.+.+||.|+|+++.. ++..... .+.++.|||....+ -+++| -...||||..=+ .-||.+|.||.+|||-+. |
T Consensus 424 l~aspG~a~G~v~~~~~~~~~~~--~~~~g~ILV~~~T~-Pd~~p~M~~a~gIvT~~GG-~TSHAAIvAR~LGIPaVVG~ 499 (913)
T 2x0s_A 424 LAASPGAAVGQVVFDAESAKEWS--GRGKKVIMVRLETS-PEDLAGMDAACGILTARGG-MTSHAAVVARGMGKCCVSGC 499 (913)
T ss_dssp EEEESSEEEEEEESSHHHHHHHT--TTTCCEEEEESSCC-TTSHHHHTTSSEEEESSCC-TTCHHHHHHHTTTCCEEECC
T ss_pred cccCCccceeeEEechhHHHHHh--hCCCceEEEcCCCC-HHHHHHHHHHHHHHHHccC-CCChHHHHHHHcCCCeecCc
Confidence 468999999998652 2222221 23456677765444 34666 377899998776 889999999999999554 5
Q ss_pred ec
Q 001268 912 FD 913 (1112)
Q Consensus 912 ~D 913 (1112)
.+
T Consensus 500 ~~ 501 (913)
T 2x0s_A 500 GD 501 (913)
T ss_dssp TT
T ss_pred ch
Confidence 43
No 19
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=86.24 E-value=1.8 Score=41.06 Aligned_cols=68 Identities=15% Similarity=0.314 Sum_probs=48.6
Q ss_pred eecCCceEEEeeeeecCCCccccCCCCCCCccccccccccc-cce-EEEEEecCCcceeEEEEEEeccccchhcccCCcc
Q 001268 43 RNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSG-EIY-LVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNF 120 (1112)
Q Consensus 43 ~~~~~~l~lHWGv~~~~~~~W~~P~~~Pk~~a~~Tpf~~~g-~~~-~v~i~~~d~~i~ai~Fvl~de~~~~W~~~~g~nf 120 (1112)
+...++..|||| + +.+.|..+|..+ |.+++ +.. ..+|++.. -..|+|+++|.. +.|-.++|+||
T Consensus 12 ~~g~~~vylHyg--~-~~g~Wt~~~~v~--------M~~~~~~gw~~~TI~l~~--g~~~~~~F~dG~-~~WDNn~g~Ny 77 (104)
T 2laa_A 12 KKGFNSPYIHYR--P-AGGSWTAAPGVK--------MQDAEISGYAKITVDIGS--ASQLEAAFNDGN-NNWDSNNTKNY 77 (104)
T ss_dssp ECSSSSCEEEEE--E-TTSCCCSSSCEE--------CEEETTTTEEEEEEECTT--CSCEEEEEECSS-SCEESTTTSCE
T ss_pred cCCCCcEEEEEc--C-CCCCCCcCCccc--------cccccCCCeEEEEEECCC--CCEEEEEEeCCC-CcCcCCCCccE
Confidence 356788999999 3 337998877543 12222 223 36666653 479999999875 89999999999
Q ss_pred cccC
Q 001268 121 RIEI 124 (1112)
Q Consensus 121 ~v~l 124 (1112)
.++.
T Consensus 78 t~~~ 81 (104)
T 2laa_A 78 SFST 81 (104)
T ss_dssp EECS
T ss_pred EecC
Confidence 9975
No 20
>2hi6_A UPF0107 protein AF0055; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Archaeoglobus fulgidus} SCOP: c.8.2.3
Probab=35.48 E-value=1.2e+02 Score=30.11 Aligned_cols=101 Identities=11% Similarity=0.189 Sum_probs=70.3
Q ss_pred eeeeceeEEEEEEEeccccc----cc-------------cccCCCCeEEEEeCCCCccccCC-----------CceEEEc
Q 001268 836 QVISPVEVCGFITSVNELIT----LQ-------------NKVYRRPTIIIASRITGEEEIPV-----------GVVAVLT 887 (1112)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~----vq-------------~~~~~~P~Illv~~v~GdEEIp~-----------~VaGVIt 887 (1112)
+.|++|.|.|.+.+.+.--. +. +.+. ..+||++....|-- .-+ .=+|+|.
T Consensus 7 r~iv~G~a~Ge~Lvs~~~lSF~GgvDp~tG~id~~H~L~G~si-agkILv~P~gkGSt-~gS~vl~~l~~~g~aPaAiI~ 84 (141)
T 2hi6_A 7 RAITRGRAEGEALVTKEYISFLGGIDKETGIVKEDCEIKGESV-AGRILVFPGGKGST-VGSYVLLNLRKNGVAPKAIIN 84 (141)
T ss_dssp EESSCCEEEEEEEECCSCCCTTSCBCTTTCBBCSCSSSTTCBC-TTSEEEESCCSCCS-SCTTHHHHHHHHTCSCSEEEE
T ss_pred EEEecceEEEEEEEeCCCceEeeeecCCCCEEcCCCCcCCCcc-cCeEEEecCCCCcc-HHHHHHHHHHHCCCCCeEEEe
Confidence 47899999999988653211 11 1222 23789988877752 332 2257777
Q ss_pred CCCCCcchhhhhhcccCCceEEEEechHHHHHHHhcCCCcEEEEEcCCceEEeecC
Q 001268 888 PDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDIS 943 (1112)
Q Consensus 888 ~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~l~~l~Gk~V~l~vss~~V~l~~~~ 943 (1112)
...=+.+.==++.|. ||.+.+.+++.++.|+ +|.+|++....+.|.+.+.+
T Consensus 85 ~~~e~Il~~Gaiva~---IP~vd~~~~d~~~~i~--~G~~v~vd~~~G~v~v~~~~ 135 (141)
T 2hi6_A 85 KKTETIIAVGAAMAE---IPLVEVRDEKFFEAVK--TGDRVVVNADEGYVELIELE 135 (141)
T ss_dssp SSCCHHHHHHHHHHT---CCEEECCCTHHHHHCC--TTSEEEEETTTTEEEEEC--
T ss_pred cCcchhhhhhhheeC---CceEeccChhHHHHhc--CCCEEEEeCCCCEEEEeeec
Confidence 664447777777777 9999999988777775 59999999888888887654
No 21
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=26.70 E-value=19 Score=25.21 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=11.5
Q ss_pred hHHHHHhhhcCCC
Q 001268 522 MMEEWHQKLHNNT 534 (1112)
Q Consensus 522 ~~eeWHQKLHnNT 534 (1112)
++||.|.||.||.
T Consensus 12 yleqlhrklknck 24 (26)
T 1xkm_B 12 YLEQLHRKLKNCK 24 (26)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCC
Confidence 6799999999985
Done!