Query 001269
Match_columns 1111
No_of_seqs 412 out of 1292
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 20:21:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0998 Synaptic vesicle prote 100.0 1.3E-46 2.9E-51 457.8 42.2 800 4-1066 8-841 (847)
2 KOG1029 Endocytic adaptor prot 100.0 1.9E-38 4E-43 366.9 36.1 101 391-492 180-280 (1118)
3 PF12763 EF-hand_4: Cytoskelet 99.9 7.2E-24 1.6E-28 201.7 7.8 94 399-493 2-97 (104)
4 KOG0998 Synaptic vesicle prote 99.9 3.1E-20 6.8E-25 227.9 30.8 313 395-722 118-553 (847)
5 KOG1029 Endocytic adaptor prot 99.9 2.1E-19 4.6E-24 210.0 32.6 94 395-490 5-98 (1118)
6 KOG1955 Ral-GTPase effector RA 99.8 4.5E-19 9.8E-24 200.4 15.5 100 390-490 215-314 (737)
7 PF12763 EF-hand_4: Cytoskelet 99.7 1.3E-17 2.9E-22 159.0 6.5 84 3-87 6-91 (104)
8 smart00027 EH Eps15 homology d 99.7 2.8E-16 6.2E-21 145.9 11.5 94 397-491 1-94 (96)
9 PF12761 End3: Actin cytoskele 99.6 3.3E-15 7.1E-20 155.6 12.5 178 459-678 1-195 (195)
10 KOG1954 Endocytosis/signaling 99.4 8.4E-14 1.8E-18 155.4 5.9 99 392-493 431-529 (532)
11 smart00027 EH Eps15 homology d 99.2 4.6E-11 1E-15 111.2 9.2 84 4-87 7-90 (96)
12 KOG1955 Ral-GTPase effector RA 99.2 8.2E-12 1.8E-16 142.5 4.5 83 4-87 228-310 (737)
13 cd00052 EH Eps15 homology doma 99.0 1E-09 2.3E-14 93.5 8.2 67 9-75 1-67 (67)
14 KOG1954 Endocytosis/signaling 99.0 4.5E-10 9.7E-15 126.2 5.2 84 3-87 440-523 (532)
15 cd00052 EH Eps15 homology doma 99.0 2.4E-09 5.2E-14 91.3 8.2 67 409-475 1-67 (67)
16 PF00038 Filament: Intermediat 98.9 2.2E-08 4.7E-13 110.6 16.0 127 583-729 165-300 (312)
17 PF13499 EF-hand_7: EF-hand do 98.6 6.5E-08 1.4E-12 83.3 6.7 60 8-67 1-66 (66)
18 PF13499 EF-hand_7: EF-hand do 98.6 8.4E-08 1.8E-12 82.6 6.6 60 408-467 1-66 (66)
19 cd05022 S-100A13 S-100A13: S-1 98.4 6.4E-07 1.4E-11 83.9 8.1 71 6-76 7-82 (89)
20 cd05027 S-100B S-100B: S-100B 98.3 2.5E-06 5.3E-11 79.6 8.9 71 6-76 7-86 (88)
21 cd05022 S-100A13 S-100A13: S-1 98.3 2.1E-06 4.5E-11 80.5 8.2 68 406-473 7-79 (89)
22 cd05025 S-100A1 S-100A1: S-100 98.3 1.9E-06 4.2E-11 79.8 7.7 72 6-77 8-88 (92)
23 PTZ00183 centrin; Provisional 98.2 8.2E-06 1.8E-10 80.0 9.5 71 400-470 10-82 (158)
24 cd05026 S-100Z S-100Z: S-100Z 98.2 8.2E-06 1.8E-10 76.5 8.9 71 6-76 9-88 (93)
25 cd05031 S-100A10_like S-100A10 98.2 8.5E-06 1.9E-10 75.9 8.8 70 6-75 7-85 (94)
26 cd05027 S-100B S-100B: S-100B 98.1 1.2E-05 2.6E-10 75.0 9.1 67 406-472 7-82 (88)
27 cd00213 S-100 S-100: S-100 dom 98.1 1.6E-05 3.5E-10 72.7 9.4 68 403-470 4-80 (88)
28 PTZ00184 calmodulin; Provision 98.1 1.4E-05 3E-10 77.1 9.3 71 400-470 4-76 (149)
29 KOG0027 Calmodulin and related 98.1 8E-06 1.7E-10 82.0 7.8 64 6-69 84-149 (151)
30 cd05023 S-100A11 S-100A11: S-1 98.1 1.5E-05 3.3E-10 74.6 8.8 71 6-76 8-87 (89)
31 cd05031 S-100A10_like S-100A10 98.1 1.8E-05 3.9E-10 73.8 9.0 68 406-473 7-83 (94)
32 cd05025 S-100A1 S-100A1: S-100 98.1 1.3E-05 2.9E-10 74.3 8.1 67 407-473 9-84 (92)
33 cd05029 S-100A6 S-100A6: S-100 98.1 1.4E-05 3E-10 74.7 8.1 67 7-73 10-83 (88)
34 COG5126 FRQ1 Ca2+-binding prot 98.0 1.3E-05 2.8E-10 82.8 7.9 65 4-68 89-155 (160)
35 cd05029 S-100A6 S-100A6: S-100 98.0 3E-05 6.4E-10 72.5 9.4 66 407-472 10-82 (88)
36 cd00213 S-100 S-100: S-100 dom 98.0 3E-05 6.6E-10 70.9 8.7 68 5-72 6-82 (88)
37 KOG0027 Calmodulin and related 98.0 2.8E-05 6.1E-10 78.0 9.1 75 401-475 2-78 (151)
38 cd05026 S-100Z S-100Z: S-100Z 98.0 4E-05 8.8E-10 71.9 9.2 65 407-471 10-83 (93)
39 COG5126 FRQ1 Ca2+-binding prot 97.9 2.2E-05 4.7E-10 81.1 7.6 65 404-468 89-155 (160)
40 PTZ00183 centrin; Provisional 97.9 2.6E-05 5.6E-10 76.5 7.9 66 5-70 15-82 (158)
41 cd00051 EFh EF-hand, calcium b 97.9 3.2E-05 6.9E-10 62.5 7.0 59 409-467 2-62 (63)
42 cd05023 S-100A11 S-100A11: S-1 97.9 5.7E-05 1.2E-09 70.8 9.0 67 406-472 8-83 (89)
43 PRK09039 hypothetical protein; 97.9 0.00039 8.5E-09 79.5 17.6 66 616-681 117-182 (343)
44 cd00252 SPARC_EC SPARC_EC; ext 97.9 4.2E-05 9.1E-10 75.2 8.2 64 402-467 43-106 (116)
45 PRK09039 hypothetical protein; 97.9 0.00034 7.4E-09 80.0 16.8 117 581-707 47-184 (343)
46 PF08317 Spc7: Spc7 kinetochor 97.9 0.00066 1.4E-08 77.0 18.9 132 585-723 154-297 (325)
47 KOG0041 Predicted Ca2+-binding 97.9 2.6E-05 5.6E-10 82.7 7.0 75 394-470 88-164 (244)
48 cd00252 SPARC_EC SPARC_EC; ext 97.8 4.9E-05 1.1E-09 74.7 8.0 60 6-67 47-106 (116)
49 PF09726 Macoilin: Transmembra 97.8 0.00053 1.1E-08 84.8 17.7 80 583-662 421-514 (697)
50 PTZ00184 calmodulin; Provision 97.8 6.5E-05 1.4E-09 72.5 8.0 66 5-70 9-76 (149)
51 cd00051 EFh EF-hand, calcium b 97.8 8.9E-05 1.9E-09 59.9 7.3 59 9-67 2-62 (63)
52 KOG0977 Nuclear envelope prote 97.8 7E-05 1.5E-09 89.4 9.2 131 584-730 246-381 (546)
53 PF13833 EF-hand_8: EF-hand do 97.7 6.8E-05 1.5E-09 62.6 5.9 49 20-68 1-52 (54)
54 PRK11637 AmiB activator; Provi 97.7 0.0014 3.1E-08 76.6 18.5 46 603-648 77-122 (428)
55 PRK11637 AmiB activator; Provi 97.7 0.0023 5E-08 74.9 19.3 6 876-881 371-376 (428)
56 TIGR02169 SMC_prok_A chromosom 97.7 0.0015 3.3E-08 83.3 19.3 59 623-681 841-899 (1164)
57 PF13833 EF-hand_8: EF-hand do 97.6 9.1E-05 2E-09 61.9 5.6 49 420-468 1-52 (54)
58 smart00787 Spc7 Spc7 kinetocho 97.6 0.0017 3.7E-08 73.7 17.3 84 635-724 210-293 (312)
59 TIGR02169 SMC_prok_A chromosom 97.6 0.0017 3.6E-08 83.0 19.3 8 400-407 149-156 (1164)
60 TIGR02168 SMC_prok_B chromosom 97.6 0.0022 4.7E-08 81.6 19.3 26 688-713 810-835 (1179)
61 TIGR02168 SMC_prok_B chromosom 97.6 0.0024 5.1E-08 81.3 19.3 46 665-713 797-842 (1179)
62 KOG0041 Predicted Ca2+-binding 97.6 0.00016 3.4E-09 76.9 7.0 68 4-71 96-165 (244)
63 PF10186 Atg14: UV radiation r 97.4 0.011 2.4E-07 64.6 19.2 132 588-722 21-161 (302)
64 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.4 0.02 4.4E-07 57.3 19.1 126 581-712 4-129 (132)
65 cd05030 calgranulins Calgranul 97.4 0.00072 1.6E-08 62.9 8.3 68 6-73 7-83 (88)
66 KOG0250 DNA repair protein RAD 97.4 0.006 1.3E-07 77.3 18.5 134 581-717 669-805 (1074)
67 cd05030 calgranulins Calgranul 97.4 0.00081 1.8E-08 62.6 8.5 65 406-470 7-80 (88)
68 TIGR01843 type_I_hlyD type I s 97.4 0.0086 1.9E-07 68.4 18.4 70 645-716 198-267 (423)
69 KOG0034 Ca2+/calmodulin-depend 97.3 0.00059 1.3E-08 72.3 8.2 66 5-70 102-176 (187)
70 COG1579 Zn-ribbon protein, pos 97.3 0.0057 1.2E-07 67.2 15.0 96 589-684 33-137 (239)
71 KOG0964 Structural maintenance 97.3 0.0041 9E-08 77.6 15.3 139 581-728 679-822 (1200)
72 COG1196 Smc Chromosome segrega 97.3 0.0049 1.1E-07 80.4 16.8 78 604-681 379-456 (1163)
73 PF08317 Spc7: Spc7 kinetochor 97.2 0.0071 1.5E-07 68.8 16.0 59 651-712 210-268 (325)
74 PF12718 Tropomyosin_1: Tropom 97.2 0.025 5.3E-07 57.8 18.1 39 604-642 17-55 (143)
75 PF09726 Macoilin: Transmembra 97.2 0.0074 1.6E-07 75.0 17.2 101 582-684 469-579 (697)
76 KOG0250 DNA repair protein RAD 97.2 0.0086 1.9E-07 76.0 17.5 46 600-645 343-388 (1074)
77 PF07888 CALCOCO1: Calcium bin 97.2 0.0094 2E-07 71.8 17.0 34 692-725 280-314 (546)
78 PF13851 GAS: Growth-arrest sp 97.2 0.016 3.5E-07 62.1 17.2 135 589-723 29-178 (201)
79 PF13851 GAS: Growth-arrest sp 97.2 0.024 5.3E-07 60.8 18.3 127 586-722 8-145 (201)
80 COG1579 Zn-ribbon protein, pos 97.2 0.012 2.7E-07 64.6 16.3 41 582-622 40-80 (239)
81 PF15619 Lebercilin: Ciliary p 97.1 0.021 4.5E-07 61.1 16.9 114 603-716 70-192 (194)
82 PRK02224 chromosome segregatio 97.1 0.016 3.5E-07 73.1 18.5 12 402-413 147-159 (880)
83 PF04849 HAP1_N: HAP1 N-termin 97.1 0.013 2.9E-07 66.3 15.8 129 584-715 164-303 (306)
84 PF07888 CALCOCO1: Calcium bin 97.1 0.024 5.2E-07 68.5 18.7 14 738-751 348-361 (546)
85 PF14658 EF-hand_9: EF-hand do 97.1 0.0012 2.6E-08 59.5 5.9 59 11-69 2-64 (66)
86 PF08614 ATG16: Autophagy prot 97.1 0.0038 8.1E-08 66.1 10.7 102 607-711 80-181 (194)
87 PF14658 EF-hand_9: EF-hand do 97.0 0.0013 2.9E-08 59.2 6.1 59 411-469 2-64 (66)
88 PHA02562 46 endonuclease subun 97.0 0.032 7E-07 66.7 19.5 57 655-714 342-398 (562)
89 KOG0034 Ca2+/calmodulin-depend 97.0 0.0019 4.2E-08 68.5 8.1 64 407-470 104-176 (187)
90 PF04156 IncA: IncA protein; 97.0 0.024 5.2E-07 59.2 16.0 31 586-616 87-117 (191)
91 TIGR01843 type_I_hlyD type I s 97.0 0.033 7.1E-07 63.7 18.0 36 640-675 200-235 (423)
92 PF00261 Tropomyosin: Tropomyo 96.9 0.041 9E-07 60.0 17.8 25 602-626 93-117 (237)
93 PF04156 IncA: IncA protein; 96.9 0.027 5.9E-07 58.8 15.1 25 604-628 91-115 (191)
94 PRK03918 chromosome segregatio 96.9 0.029 6.2E-07 70.7 18.1 16 743-758 747-762 (880)
95 PRK02224 chromosome segregatio 96.9 0.027 5.9E-07 71.1 18.0 78 635-712 355-436 (880)
96 KOG0161 Myosin class II heavy 96.9 0.032 7E-07 75.3 19.1 108 603-713 896-1010(1930)
97 KOG1003 Actin filament-coating 96.9 0.07 1.5E-06 57.1 17.9 132 581-715 5-150 (205)
98 PF04111 APG6: Autophagy prote 96.9 0.0073 1.6E-07 68.6 11.6 26 589-614 11-36 (314)
99 COG3883 Uncharacterized protei 96.8 0.075 1.6E-06 59.4 18.6 60 581-640 39-98 (265)
100 PF12718 Tropomyosin_1: Tropom 96.8 0.056 1.2E-06 55.3 16.4 119 585-713 19-140 (143)
101 PF10473 CENP-F_leu_zip: Leuci 96.8 0.1 2.3E-06 53.4 18.1 61 624-684 61-121 (140)
102 KOG0037 Ca2+-binding protein, 96.8 0.0043 9.2E-08 67.1 8.6 67 6-72 123-191 (221)
103 PRK04863 mukB cell division pr 96.8 0.041 8.9E-07 73.5 19.2 93 589-682 309-401 (1486)
104 smart00787 Spc7 Spc7 kinetocho 96.8 0.035 7.7E-07 63.2 16.2 58 651-711 205-262 (312)
105 TIGR03007 pepcterm_ChnLen poly 96.8 0.039 8.4E-07 65.5 17.3 26 659-684 319-344 (498)
106 PRK04863 mukB cell division pr 96.8 0.055 1.2E-06 72.4 20.2 123 623-746 363-506 (1486)
107 PF10481 CENP-F_N: Cenp-F N-te 96.8 0.039 8.5E-07 61.4 15.8 91 587-684 18-108 (307)
108 PF12128 DUF3584: Protein of u 96.8 0.04 8.7E-07 72.5 18.7 135 588-722 615-770 (1201)
109 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.7 0.17 3.6E-06 50.8 18.5 79 633-711 35-121 (132)
110 COG4372 Uncharacterized protei 96.7 0.11 2.4E-06 60.2 18.8 109 595-706 110-218 (499)
111 KOG0028 Ca2+-binding protein ( 96.7 0.0049 1.1E-07 64.0 7.5 63 6-68 105-169 (172)
112 PF10168 Nup88: Nuclear pore c 96.7 0.089 1.9E-06 66.0 19.8 30 691-720 688-717 (717)
113 KOG0037 Ca2+-binding protein, 96.7 0.0065 1.4E-07 65.7 8.6 68 405-472 122-191 (221)
114 KOG0377 Protein serine/threoni 96.7 0.0042 9.1E-08 72.4 7.6 69 406-474 546-620 (631)
115 cd05024 S-100A10 S-100A10: A s 96.7 0.011 2.4E-07 56.3 9.3 70 6-76 7-83 (91)
116 KOG0977 Nuclear envelope prote 96.7 0.041 8.8E-07 66.6 16.1 81 627-710 111-191 (546)
117 PHA02562 46 endonuclease subun 96.6 0.054 1.2E-06 64.8 17.1 38 625-662 333-370 (562)
118 PF15619 Lebercilin: Ciliary p 96.6 0.17 3.7E-06 54.3 18.9 64 650-713 75-143 (194)
119 KOG0377 Protein serine/threoni 96.6 0.0043 9.4E-08 72.2 7.2 69 5-73 545-619 (631)
120 KOG0161 Myosin class II heavy 96.6 0.042 9.2E-07 74.3 17.2 125 588-715 902-1026(1930)
121 KOG0971 Microtubule-associated 96.6 0.036 7.8E-07 69.2 15.2 172 581-754 333-532 (1243)
122 KOG0996 Structural maintenance 96.6 0.038 8.2E-07 70.7 15.5 17 425-441 653-669 (1293)
123 KOG4302 Microtubule-associated 96.6 0.027 5.8E-07 69.4 14.0 131 586-726 38-205 (660)
124 TIGR01005 eps_transp_fam exopo 96.5 0.11 2.3E-06 65.1 19.5 87 634-720 321-408 (754)
125 PF00261 Tropomyosin: Tropomyo 96.5 0.18 3.9E-06 55.2 18.9 77 586-662 91-167 (237)
126 PF10186 Atg14: UV radiation r 96.5 0.13 2.8E-06 56.4 18.0 92 611-705 59-150 (302)
127 PRK12309 transaldolase/EF-hand 96.5 0.0049 1.1E-07 72.0 7.3 55 6-71 333-387 (391)
128 TIGR01005 eps_transp_fam exopo 96.5 0.032 6.8E-07 69.7 14.8 17 439-455 83-99 (754)
129 KOG0933 Structural maintenance 96.5 0.09 1.9E-06 66.6 18.2 90 621-713 786-875 (1174)
130 PLN02964 phosphatidylserine de 96.5 0.0063 1.4E-07 74.9 8.3 61 9-69 181-243 (644)
131 PF11559 ADIP: Afadin- and alp 96.5 0.2 4.3E-06 51.0 17.7 95 612-712 56-150 (151)
132 TIGR03007 pepcterm_ChnLen poly 96.5 0.037 8E-07 65.6 14.5 13 441-453 81-93 (498)
133 KOG0243 Kinesin-like protein [ 96.5 0.11 2.3E-06 66.6 18.9 137 583-726 407-563 (1041)
134 KOG0044 Ca2+ sensor (EF-Hand s 96.5 0.0058 1.3E-07 65.2 6.9 74 407-480 64-139 (193)
135 PF09304 Cortex-I_coil: Cortex 96.5 0.13 2.8E-06 50.5 15.3 79 583-682 12-90 (107)
136 PF00038 Filament: Intermediat 96.5 0.21 4.5E-06 55.9 19.2 25 692-716 259-283 (312)
137 COG4372 Uncharacterized protei 96.4 0.18 4E-06 58.5 18.7 119 588-716 138-259 (499)
138 KOG0996 Structural maintenance 96.4 0.061 1.3E-06 68.9 16.3 14 586-599 864-877 (1293)
139 PF00036 EF-hand_1: EF hand; 96.4 0.0027 5.8E-08 48.3 2.9 27 42-68 1-27 (29)
140 PF05278 PEARLI-4: Arabidopsis 96.4 0.077 1.7E-06 59.3 15.2 97 587-684 149-248 (269)
141 COG4942 Membrane-bound metallo 96.4 0.22 4.7E-06 58.9 19.4 16 868-883 351-370 (420)
142 KOG0976 Rho/Rac1-interacting s 96.4 0.055 1.2E-06 66.8 14.9 81 585-665 328-408 (1265)
143 KOG0044 Ca2+ sensor (EF-Hand s 96.4 0.0069 1.5E-07 64.7 6.6 73 3-75 60-134 (193)
144 KOG0980 Actin-binding protein 96.4 0.31 6.7E-06 61.4 21.2 83 602-684 387-479 (980)
145 KOG0995 Centromere-associated 96.3 0.17 3.7E-06 61.2 18.3 78 581-658 236-316 (581)
146 TIGR00606 rad50 rad50. This fa 96.3 0.061 1.3E-06 71.4 16.2 20 395-414 160-180 (1311)
147 PLN02964 phosphatidylserine de 96.3 0.012 2.6E-07 72.5 9.1 68 402-469 174-243 (644)
148 PRK12309 transaldolase/EF-hand 96.2 0.0098 2.1E-07 69.5 7.6 57 405-472 332-388 (391)
149 PF06818 Fez1: Fez1; InterPro 96.2 0.22 4.8E-06 53.8 16.9 135 581-715 11-158 (202)
150 PRK04778 septation ring format 96.2 0.12 2.6E-06 63.1 16.9 51 666-719 378-428 (569)
151 KOG0976 Rho/Rac1-interacting s 96.2 0.16 3.4E-06 63.1 17.2 43 593-635 105-147 (1265)
152 KOG0804 Cytoplasmic Zn-finger 96.2 0.11 2.4E-06 61.3 15.3 17 400-416 85-101 (493)
153 PF11932 DUF3450: Protein of u 96.2 0.27 5.8E-06 54.1 17.7 80 603-682 37-116 (251)
154 PF10146 zf-C4H2: Zinc finger- 96.1 0.093 2E-06 57.6 14.0 44 585-628 13-59 (230)
155 PF04111 APG6: Autophagy prote 96.1 0.25 5.5E-06 56.4 18.0 145 586-739 42-208 (314)
156 KOG0028 Ca2+-binding protein ( 96.1 0.016 3.6E-07 60.3 7.7 64 405-468 104-169 (172)
157 PRK04778 septation ring format 96.1 0.1 2.2E-06 63.7 15.7 48 663-713 382-429 (569)
158 TIGR03017 EpsF chain length de 96.1 0.21 4.5E-06 58.5 17.6 51 634-684 287-338 (444)
159 KOG0804 Cytoplasmic Zn-finger 96.1 0.23 5E-06 58.7 17.4 17 697-713 430-446 (493)
160 TIGR00606 rad50 rad50. This fa 96.1 0.21 4.6E-06 66.5 19.5 46 663-711 887-932 (1311)
161 PF15397 DUF4618: Domain of un 96.1 0.24 5.2E-06 55.3 16.8 124 585-711 79-209 (258)
162 PF09789 DUF2353: Uncharacteri 96.1 0.21 4.5E-06 57.3 16.7 100 622-721 72-229 (319)
163 KOG0239 Kinesin (KAR3 subfamil 96.0 0.11 2.3E-06 64.8 15.4 119 580-705 175-293 (670)
164 PF14662 CCDC155: Coiled-coil 96.0 0.46 9.9E-06 51.0 17.9 21 693-713 121-141 (193)
165 PRK01156 chromosome segregatio 96.0 0.22 4.7E-06 63.5 18.6 6 402-407 147-152 (895)
166 cd05024 S-100A10 S-100A10: A s 96.0 0.031 6.8E-07 53.4 8.3 65 407-472 8-79 (91)
167 PF15070 GOLGA2L5: Putative go 96.0 0.18 3.8E-06 62.4 16.9 60 649-711 159-218 (617)
168 PF09602 PhaP_Bmeg: Polyhydrox 96.0 0.78 1.7E-05 48.3 19.0 120 593-716 14-135 (165)
169 PF10146 zf-C4H2: Zinc finger- 96.0 0.15 3.2E-06 56.1 14.4 59 662-723 51-110 (230)
170 PF05701 WEMBL: Weak chloropla 96.0 0.24 5.2E-06 60.1 17.6 59 623-681 296-354 (522)
171 PF14662 CCDC155: Coiled-coil 95.9 0.59 1.3E-05 50.2 18.3 93 621-716 66-172 (193)
172 TIGR01000 bacteriocin_acc bact 95.9 0.19 4.1E-06 59.6 16.3 25 692-716 288-312 (457)
173 KOG0980 Actin-binding protein 95.9 0.27 5.9E-06 61.8 17.8 50 610-659 412-461 (980)
174 PF15070 GOLGA2L5: Putative go 95.9 0.25 5.4E-06 61.1 17.7 26 659-684 190-215 (617)
175 PF12325 TMF_TATA_bd: TATA ele 95.9 0.25 5.4E-06 49.5 14.4 92 582-684 18-109 (120)
176 KOG0046 Ca2+-binding actin-bun 95.9 0.022 4.7E-07 67.9 8.2 77 396-473 6-89 (627)
177 PF10498 IFT57: Intra-flagella 95.9 0.11 2.4E-06 60.3 13.8 103 603-708 236-348 (359)
178 PF05701 WEMBL: Weak chloropla 95.9 0.3 6.6E-06 59.2 18.0 11 586-596 224-234 (522)
179 PF15066 CAGE1: Cancer-associa 95.9 0.17 3.8E-06 59.8 15.2 107 619-728 401-523 (527)
180 PF09789 DUF2353: Uncharacteri 95.9 0.24 5.3E-06 56.7 16.0 78 581-658 87-169 (319)
181 TIGR03017 EpsF chain length de 95.9 0.18 3.8E-06 59.0 15.5 17 439-455 78-94 (444)
182 PF08614 ATG16: Autophagy prot 95.8 0.12 2.5E-06 55.0 12.7 79 601-679 95-173 (194)
183 PF10473 CENP-F_leu_zip: Leuci 95.8 0.24 5.1E-06 50.9 14.2 74 586-659 16-89 (140)
184 KOG4643 Uncharacterized coiled 95.8 0.21 4.5E-06 63.5 16.3 64 645-709 252-315 (1195)
185 PF00036 EF-hand_1: EF hand; 95.8 0.0092 2E-07 45.5 3.0 27 442-468 1-27 (29)
186 PF13405 EF-hand_6: EF-hand do 95.7 0.013 2.8E-07 44.5 3.7 28 8-35 1-28 (31)
187 KOG1853 LIS1-interacting prote 95.7 0.31 6.7E-06 54.1 15.5 47 616-662 78-124 (333)
188 KOG0018 Structural maintenance 95.7 0.2 4.3E-06 64.1 15.8 106 604-722 662-767 (1141)
189 KOG4360 Uncharacterized coiled 95.7 0.27 5.8E-06 58.9 15.9 124 585-711 164-298 (596)
190 PF10498 IFT57: Intra-flagella 95.7 0.3 6.6E-06 56.9 16.4 106 603-718 215-324 (359)
191 PF13405 EF-hand_6: EF-hand do 95.7 0.013 2.8E-07 44.5 3.6 28 408-435 1-28 (31)
192 PF13870 DUF4201: Domain of un 95.7 0.66 1.4E-05 48.5 17.3 76 641-716 89-166 (177)
193 PF15294 Leu_zip: Leucine zipp 95.7 0.25 5.4E-06 55.7 14.9 45 585-629 130-174 (278)
194 KOG0995 Centromere-associated 95.7 0.29 6.2E-06 59.4 16.2 72 581-652 253-324 (581)
195 COG3883 Uncharacterized protei 95.6 0.053 1.1E-06 60.5 9.4 26 617-642 33-58 (265)
196 PF05911 DUF869: Plant protein 95.6 0.22 4.8E-06 62.8 15.9 35 650-684 659-693 (769)
197 PF10174 Cast: RIM-binding pro 95.6 0.32 6.9E-06 61.6 17.1 73 580-652 336-408 (775)
198 KOG0288 WD40 repeat protein Ti 95.5 0.16 3.5E-06 59.4 13.2 24 657-680 48-71 (459)
199 KOG0994 Extracellular matrix g 95.5 0.45 9.7E-06 61.2 17.7 104 610-716 1600-1710(1758)
200 PF05667 DUF812: Protein of un 95.5 0.52 1.1E-05 58.2 18.3 40 581-620 329-368 (594)
201 PF06818 Fez1: Fez1; InterPro 95.5 0.18 3.9E-06 54.4 12.6 94 604-714 13-106 (202)
202 KOG0963 Transcription factor/C 95.5 0.2 4.3E-06 61.1 14.2 120 623-746 243-371 (629)
203 PRK10884 SH3 domain-containing 95.5 0.15 3.3E-06 55.2 12.0 17 695-711 153-169 (206)
204 KOG0971 Microtubule-associated 95.4 0.87 1.9E-05 57.7 19.5 44 584-627 228-281 (1243)
205 PF12128 DUF3584: Protein of u 95.4 0.66 1.4E-05 61.5 20.1 17 696-712 772-788 (1201)
206 PF05667 DUF812: Protein of un 95.4 0.48 1E-05 58.5 17.6 58 582-646 323-380 (594)
207 KOG4674 Uncharacterized conser 95.4 0.5 1.1E-05 63.9 18.6 27 691-717 1356-1382(1822)
208 KOG0964 Structural maintenance 95.4 0.39 8.5E-06 61.0 16.7 133 586-721 229-382 (1200)
209 PRK01156 chromosome segregatio 95.4 0.48 1E-05 60.5 18.2 28 692-719 420-447 (895)
210 PF05911 DUF869: Plant protein 95.4 0.5 1.1E-05 59.8 17.9 46 587-632 24-80 (769)
211 PF12795 MscS_porin: Mechanose 95.4 0.76 1.6E-05 50.3 17.3 113 604-716 81-213 (240)
212 PF04849 HAP1_N: HAP1 N-termin 95.4 0.56 1.2E-05 53.6 16.6 14 400-413 34-47 (306)
213 KOG0979 Structural maintenance 95.4 0.57 1.2E-05 59.9 18.0 108 607-717 247-354 (1072)
214 PF11932 DUF3450: Protein of u 95.3 0.35 7.5E-06 53.2 14.6 6 749-754 214-219 (251)
215 PF13202 EF-hand_5: EF hand; P 95.3 0.018 4E-07 42.4 3.2 24 10-33 2-25 (25)
216 PF10174 Cast: RIM-binding pro 95.3 0.65 1.4E-05 58.9 18.5 106 603-711 303-415 (775)
217 COG4942 Membrane-bound metallo 95.3 0.83 1.8E-05 54.2 18.2 15 670-684 160-174 (420)
218 PF09738 DUF2051: Double stran 95.3 0.75 1.6E-05 52.6 17.3 124 583-713 80-237 (302)
219 COG1340 Uncharacterized archae 95.2 0.6 1.3E-05 53.1 16.0 92 586-684 157-248 (294)
220 KOG4223 Reticulocalbin, calume 95.2 0.021 4.5E-07 64.9 4.7 64 6-69 76-141 (325)
221 TIGR03185 DNA_S_dndD DNA sulfu 95.2 0.57 1.2E-05 58.1 17.4 9 705-713 505-513 (650)
222 PRK09841 cryptic autophosphory 95.2 0.4 8.8E-06 60.2 16.3 27 603-629 269-295 (726)
223 PRK11519 tyrosine kinase; Prov 95.2 0.47 1E-05 59.6 16.7 26 603-628 269-294 (719)
224 TIGR03794 NHPM_micro_HlyD NHPM 95.1 0.62 1.4E-05 54.6 16.7 26 694-719 226-251 (421)
225 PRK09841 cryptic autophosphory 95.1 0.37 8E-06 60.6 15.5 24 692-715 374-397 (726)
226 KOG1899 LAR transmembrane tyro 95.0 0.48 1E-05 57.8 15.4 126 588-720 140-270 (861)
227 KOG0031 Myosin regulatory ligh 95.0 0.064 1.4E-06 55.8 7.2 62 407-468 101-164 (171)
228 PF10168 Nup88: Nuclear pore c 95.0 0.38 8.3E-06 60.5 15.3 75 586-660 542-617 (717)
229 PF09304 Cortex-I_coil: Cortex 95.0 0.63 1.4E-05 45.9 13.4 99 613-714 7-105 (107)
230 PRK10476 multidrug resistance 95.0 0.97 2.1E-05 51.5 17.3 27 653-679 155-181 (346)
231 PF12795 MscS_porin: Mechanose 95.0 0.53 1.2E-05 51.4 14.6 24 690-713 145-168 (240)
232 PRK10884 SH3 domain-containing 95.0 0.18 3.8E-06 54.7 10.7 23 606-628 91-113 (206)
233 KOG4673 Transcription factor T 95.0 0.6 1.3E-05 57.5 16.0 26 688-713 537-562 (961)
234 PF04012 PspA_IM30: PspA/IM30 95.0 3.2 6.9E-05 44.6 20.2 91 628-718 90-188 (221)
235 KOG0030 Myosin essential light 95.0 0.066 1.4E-06 54.9 6.9 74 401-474 5-82 (152)
236 PF09755 DUF2046: Uncharacteri 94.9 1.3 2.9E-05 50.7 17.8 22 693-714 227-248 (310)
237 PRK11519 tyrosine kinase; Prov 94.9 0.17 3.7E-06 63.4 12.1 22 692-713 374-395 (719)
238 PF14915 CCDC144C: CCDC144C pr 94.9 1 2.3E-05 51.2 16.8 81 604-684 147-227 (305)
239 COG1340 Uncharacterized archae 94.9 0.55 1.2E-05 53.4 14.6 30 688-717 165-194 (294)
240 KOG0994 Extracellular matrix g 94.9 0.88 1.9E-05 58.8 17.6 70 589-658 1544-1613(1758)
241 PF06008 Laminin_I: Laminin Do 94.9 1.1 2.4E-05 49.7 16.9 21 693-713 183-203 (264)
242 PF10591 SPARC_Ca_bdg: Secrete 94.9 0.012 2.6E-07 57.8 1.4 64 402-465 49-112 (113)
243 PF06160 EzrA: Septation ring 94.9 1.3 2.9E-05 54.3 19.0 113 603-717 254-366 (560)
244 KOG0982 Centrosomal protein Nu 94.8 0.34 7.3E-06 57.0 13.0 37 671-710 403-439 (502)
245 PF12325 TMF_TATA_bd: TATA ele 94.8 0.99 2.2E-05 45.3 14.6 43 629-671 68-110 (120)
246 PF11559 ADIP: Afadin- and alp 94.8 2.8 6E-05 42.8 18.2 9 634-642 71-79 (151)
247 KOG0031 Myosin regulatory ligh 94.8 0.11 2.3E-06 54.2 8.0 61 8-68 102-164 (171)
248 PRK03947 prefoldin subunit alp 94.8 0.64 1.4E-05 46.7 13.5 9 588-596 7-15 (140)
249 PRK11281 hypothetical protein; 94.8 0.25 5.4E-06 64.7 13.1 81 633-713 125-210 (1113)
250 PF09730 BicD: Microtubule-ass 94.7 0.82 1.8E-05 57.5 16.9 21 712-732 167-187 (717)
251 PF15397 DUF4618: Domain of un 94.7 0.74 1.6E-05 51.6 14.9 124 581-713 82-225 (258)
252 KOG0946 ER-Golgi vesicle-tethe 94.7 0.58 1.3E-05 58.7 15.2 44 603-646 673-716 (970)
253 PRK11281 hypothetical protein; 94.7 0.48 1E-05 62.2 15.4 121 604-724 124-256 (1113)
254 KOG0978 E3 ubiquitin ligase in 94.6 0.86 1.9E-05 57.0 16.5 50 635-684 551-600 (698)
255 KOG0946 ER-Golgi vesicle-tethe 94.6 0.49 1.1E-05 59.3 14.2 27 623-649 738-764 (970)
256 PRK03947 prefoldin subunit alp 94.6 0.75 1.6E-05 46.3 13.3 15 695-709 122-136 (140)
257 PF13514 AAA_27: AAA domain 94.5 1.2 2.7E-05 58.5 18.8 89 634-722 741-842 (1111)
258 KOG0978 E3 ubiquitin ligase in 94.5 1.4 3.1E-05 55.1 18.0 93 616-711 525-617 (698)
259 PF03148 Tektin: Tektin family 94.5 2.2 4.8E-05 50.1 18.9 57 603-659 246-302 (384)
260 PRK10929 putative mechanosensi 94.5 1 2.2E-05 59.2 17.5 24 691-714 211-234 (1109)
261 COG0419 SbcC ATPase involved i 94.5 1.1 2.5E-05 57.6 17.9 20 695-714 726-745 (908)
262 PF13805 Pil1: Eisosome compon 94.5 1.6 3.4E-05 49.4 16.7 107 607-713 81-190 (271)
263 COG1842 PspA Phage shock prote 94.4 3.6 7.7E-05 45.4 19.1 102 581-682 32-145 (225)
264 KOG4674 Uncharacterized conser 94.4 1.3 2.7E-05 60.3 18.2 83 628-713 184-270 (1822)
265 PF07798 DUF1640: Protein of u 94.4 2.5 5.4E-05 44.5 17.2 25 691-715 134-158 (177)
266 PF10591 SPARC_Ca_bdg: Secrete 94.4 0.02 4.4E-07 56.1 1.7 58 8-65 55-112 (113)
267 TIGR03319 YmdA_YtgF conserved 94.4 1.5 3.4E-05 53.3 17.8 71 611-681 58-128 (514)
268 PF10267 Tmemb_cc2: Predicted 94.4 0.91 2E-05 53.6 15.3 14 405-418 30-43 (395)
269 KOG0040 Ca2+-binding actin-bun 94.3 0.087 1.9E-06 68.6 7.4 68 400-467 2246-2322(2399)
270 PF15272 BBP1_C: Spindle pole 94.3 2 4.3E-05 46.5 16.4 146 602-760 38-194 (196)
271 KOG0036 Predicted mitochondria 94.3 0.079 1.7E-06 62.0 6.4 65 7-71 82-148 (463)
272 COG3206 GumC Uncharacterized p 94.3 1.5 3.3E-05 52.1 17.2 55 663-717 341-395 (458)
273 KOG0933 Structural maintenance 94.3 1.6 3.4E-05 56.1 17.7 72 610-681 824-895 (1174)
274 KOG0288 WD40 repeat protein Ti 94.2 1.7 3.6E-05 51.4 16.6 64 581-644 14-77 (459)
275 PRK10361 DNA recombination pro 94.2 2.8 6.1E-05 50.7 19.1 53 666-718 142-195 (475)
276 PF02050 FliJ: Flagellar FliJ 94.2 2.8 6.2E-05 39.2 15.6 38 634-671 50-87 (123)
277 PF15290 Syntaphilin: Golgi-lo 94.2 1.1 2.5E-05 50.4 14.6 103 604-720 71-176 (305)
278 PF07111 HCR: Alpha helical co 94.1 1.4 3E-05 54.9 16.6 82 630-713 515-600 (739)
279 TIGR03185 DNA_S_dndD DNA sulfu 94.1 1.6 3.5E-05 54.2 17.7 45 637-681 422-466 (650)
280 PF07851 TMPIT: TMPIT-like pro 94.1 0.34 7.4E-06 55.8 11.0 88 586-680 3-91 (330)
281 TIGR02231 conserved hypothetic 94.1 0.31 6.7E-06 58.8 11.3 100 582-684 73-172 (525)
282 PF04582 Reo_sigmaC: Reovirus 94.1 0.048 1E-06 62.4 4.1 61 624-684 65-125 (326)
283 TIGR02680 conserved hypothetic 94.1 1.8 4E-05 58.2 19.2 19 456-474 175-193 (1353)
284 COG5185 HEC1 Protein involved 94.1 2.7 5.8E-05 50.4 18.1 109 635-746 329-464 (622)
285 smart00502 BBC B-Box C-termina 94.1 2.2 4.7E-05 40.7 14.8 30 587-616 7-36 (127)
286 PF09730 BicD: Microtubule-ass 94.0 1.5 3.3E-05 55.2 17.1 16 666-681 130-145 (717)
287 PF10234 Cluap1: Clusterin-ass 94.0 1.3 2.8E-05 49.9 15.1 87 634-726 167-253 (267)
288 PF13166 AAA_13: AAA domain 94.0 1.2 2.7E-05 55.2 16.5 51 666-719 412-472 (712)
289 PF06160 EzrA: Septation ring 94.0 1.4 3.1E-05 54.1 16.7 140 584-726 348-512 (560)
290 TIGR02977 phageshock_pspA phag 94.0 4.7 0.0001 43.8 18.9 56 629-684 92-147 (219)
291 TIGR01000 bacteriocin_acc bact 94.0 1.4 3E-05 52.4 16.2 9 744-752 288-296 (457)
292 PRK10698 phage shock protein P 94.0 4.9 0.00011 44.1 18.9 48 634-681 97-144 (222)
293 PF15556 Zwint: ZW10 interacto 93.9 8.5 0.00018 42.0 20.0 71 652-732 136-206 (252)
294 TIGR02680 conserved hypothetic 93.9 2.6 5.6E-05 56.9 20.0 28 695-722 375-402 (1353)
295 KOG0030 Myosin essential light 93.9 0.14 3.1E-06 52.5 6.6 70 4-73 8-81 (152)
296 PF13870 DUF4201: Domain of un 93.9 5.2 0.00011 41.9 18.4 85 629-723 56-140 (177)
297 KOG0612 Rho-associated, coiled 93.9 1.5 3.2E-05 57.4 16.7 18 280-297 206-223 (1317)
298 PRK12704 phosphodiesterase; Pr 93.9 1.6 3.6E-05 53.2 16.7 71 611-681 64-134 (520)
299 KOG0036 Predicted mitochondria 93.8 0.13 2.7E-06 60.4 6.9 64 407-470 82-147 (463)
300 PRK12704 phosphodiesterase; Pr 93.8 2.3 5E-05 52.0 17.8 13 699-711 166-178 (520)
301 KOG0612 Rho-associated, coiled 93.8 1.1 2.4E-05 58.3 15.6 67 4-70 132-226 (1317)
302 PF13514 AAA_27: AAA domain 93.8 1.7 3.7E-05 57.3 17.9 57 652-709 898-954 (1111)
303 PRK00106 hypothetical protein; 93.8 2.3 5.1E-05 52.1 17.8 36 646-681 114-149 (535)
304 PF06008 Laminin_I: Laminin Do 93.8 1.6 3.5E-05 48.4 15.1 69 589-657 47-115 (264)
305 KOG4643 Uncharacterized coiled 93.8 2.2 4.8E-05 54.9 17.6 48 672-722 531-580 (1195)
306 cd00176 SPEC Spectrin repeats, 93.7 3.1 6.6E-05 42.1 16.0 58 661-718 150-209 (213)
307 PF10211 Ax_dynein_light: Axon 93.7 1.3 2.9E-05 47.3 13.8 9 701-709 169-177 (189)
308 PF14073 Cep57_CLD: Centrosome 93.7 1.7 3.6E-05 46.5 14.2 99 604-705 74-172 (178)
309 KOG0999 Microtubule-associated 93.7 1.8 3.9E-05 52.5 15.9 25 659-683 109-133 (772)
310 PF15450 DUF4631: Domain of un 93.7 1.7 3.7E-05 52.6 15.9 121 603-725 393-516 (531)
311 PRK00286 xseA exodeoxyribonucl 93.7 2.7 5.9E-05 49.8 17.7 37 645-681 329-367 (438)
312 PRK10869 recombination and rep 93.7 1.5 3.4E-05 53.7 16.1 28 702-729 370-398 (553)
313 KOG0038 Ca2+-binding kinase in 93.6 0.1 2.2E-06 53.9 5.1 56 12-67 113-175 (189)
314 TIGR01010 BexC_CtrB_KpsE polys 93.6 1.2 2.7E-05 51.1 14.3 26 603-628 172-197 (362)
315 TIGR00998 8a0101 efflux pump m 93.5 2.3 4.9E-05 47.8 16.1 10 587-596 80-89 (334)
316 PRK12705 hypothetical protein; 93.5 2.4 5.2E-05 51.7 17.0 66 611-676 59-124 (508)
317 PF13202 EF-hand_5: EF hand; P 93.5 0.065 1.4E-06 39.5 2.5 25 43-67 1-25 (25)
318 PF09755 DUF2046: Uncharacteri 93.4 2.7 5.8E-05 48.3 16.3 15 697-711 158-172 (310)
319 KOG1853 LIS1-interacting prote 93.4 4.9 0.00011 45.0 17.7 55 599-660 43-97 (333)
320 PF09731 Mitofilin: Mitochondr 93.4 3.8 8.1E-05 50.2 18.9 22 694-715 377-398 (582)
321 KOG0999 Microtubule-associated 93.4 3 6.5E-05 50.8 17.2 78 629-709 107-201 (772)
322 KOG0018 Structural maintenance 93.4 2.1 4.6E-05 55.4 16.9 126 586-711 675-823 (1141)
323 KOG1655 Protein involved in va 93.4 1.7 3.7E-05 46.9 13.8 153 582-766 28-185 (218)
324 PF08702 Fib_alpha: Fibrinogen 93.4 3 6.4E-05 43.2 15.3 95 584-684 33-131 (146)
325 TIGR02971 heterocyst_DevB ABC 93.4 4.4 9.6E-05 45.6 18.1 25 695-719 179-203 (327)
326 PF06705 SF-assemblin: SF-asse 93.4 5.3 0.00011 44.0 18.2 16 696-711 147-162 (247)
327 TIGR00634 recN DNA repair prot 93.4 1.8 3.9E-05 53.0 16.0 25 704-728 377-402 (563)
328 PF03148 Tektin: Tektin family 93.4 3.7 8E-05 48.3 17.9 117 590-712 221-355 (384)
329 PF07106 TBPIP: Tat binding pr 93.3 1.1 2.5E-05 46.4 12.3 50 663-714 115-164 (169)
330 PF05483 SCP-1: Synaptonemal c 93.3 3.8 8.1E-05 51.1 18.1 55 586-640 512-566 (786)
331 TIGR00634 recN DNA repair prot 93.3 1.6 3.6E-05 53.3 15.6 91 623-713 267-371 (563)
332 KOG4302 Microtubule-associated 93.3 1.9 4.2E-05 53.8 16.1 115 603-717 49-182 (660)
333 COG5185 HEC1 Protein involved 93.3 3.2 7E-05 49.7 17.0 123 584-713 268-400 (622)
334 KOG4637 Adaptor for phosphoino 93.3 1.6 3.4E-05 51.0 14.2 85 660-754 226-321 (464)
335 PF02994 Transposase_22: L1 tr 93.3 0.11 2.5E-06 60.3 5.5 107 610-723 86-196 (370)
336 PF13166 AAA_13: AAA domain 93.3 1.5 3.3E-05 54.4 15.5 18 453-470 176-193 (712)
337 KOG2991 Splicing regulator [RN 93.3 4.3 9.4E-05 45.5 16.9 77 652-728 238-318 (330)
338 PF05010 TACC: Transforming ac 93.3 7.1 0.00015 42.7 18.5 11 610-620 71-81 (207)
339 COG4477 EzrA Negative regulato 93.2 3.2 6.8E-05 50.6 17.1 132 587-720 229-372 (570)
340 TIGR02338 gimC_beta prefoldin, 93.2 2.2 4.7E-05 41.7 13.3 34 589-622 5-38 (110)
341 PF04949 Transcrip_act: Transc 93.2 11 0.00024 39.5 18.6 47 635-681 83-129 (159)
342 KOG2196 Nuclear porin [Nuclear 93.2 1.6 3.5E-05 48.5 13.5 119 588-716 75-206 (254)
343 TIGR02977 phageshock_pspA phag 93.2 3.2 7E-05 45.1 15.9 50 649-701 98-147 (219)
344 COG1382 GimC Prefoldin, chaper 93.2 2.5 5.4E-05 42.6 13.7 33 652-684 79-111 (119)
345 PF12072 DUF3552: Domain of un 93.1 5.3 0.00011 43.0 17.3 73 611-683 60-132 (201)
346 COG0419 SbcC ATPase involved i 93.0 3.5 7.6E-05 53.3 18.6 62 651-712 316-378 (908)
347 PF09728 Taxilin: Myosin-like 93.0 2.9 6.3E-05 48.0 16.0 114 585-705 27-152 (309)
348 PF06120 Phage_HK97_TLTM: Tail 93.0 4.4 9.6E-05 46.5 17.2 13 669-681 132-144 (301)
349 PTZ00464 SNF-7-like protein; P 93.0 4.2 9.1E-05 44.5 16.4 26 695-720 124-149 (211)
350 PF02403 Seryl_tRNA_N: Seryl-t 93.0 1 2.2E-05 43.4 10.5 69 650-718 29-97 (108)
351 COG1382 GimC Prefoldin, chaper 93.0 1.5 3.3E-05 44.1 11.9 33 652-684 72-104 (119)
352 KOG2891 Surface glycoprotein [ 92.9 2.3 5E-05 48.0 14.5 32 666-704 392-423 (445)
353 COG1842 PspA Phage shock prote 92.9 3.9 8.5E-05 45.1 16.1 10 587-596 31-40 (225)
354 PF04012 PspA_IM30: PspA/IM30 92.9 5.4 0.00012 42.9 17.0 32 585-616 28-59 (221)
355 PF08172 CASP_C: CASP C termin 92.8 0.86 1.9E-05 50.8 11.2 108 583-701 2-134 (248)
356 cd00632 Prefoldin_beta Prefold 92.8 2.7 5.9E-05 40.6 13.2 17 604-620 9-25 (105)
357 PRK09343 prefoldin subunit bet 92.8 2.7 5.8E-05 42.0 13.5 33 588-620 8-40 (121)
358 KOG4460 Nuclear pore complex, 92.8 4.7 0.0001 49.2 17.5 54 606-659 586-639 (741)
359 PF12252 SidE: Dot/Icm substra 92.8 1.7 3.6E-05 56.0 14.5 68 651-720 1161-1229(1439)
360 PF09787 Golgin_A5: Golgin sub 92.8 2 4.3E-05 52.2 15.0 67 606-672 230-310 (511)
361 PF10481 CENP-F_N: Cenp-F N-te 92.8 2.8 6.1E-05 47.3 14.7 34 651-684 89-122 (307)
362 TIGR02132 phaR_Bmeg polyhydrox 92.7 2.7 5.8E-05 44.9 13.8 23 699-721 154-176 (189)
363 KOG3091 Nuclear pore complex, 92.7 1.1 2.4E-05 53.8 12.4 106 582-718 378-506 (508)
364 KOG4593 Mitotic checkpoint pro 92.7 3 6.4E-05 52.1 16.2 125 582-709 379-517 (716)
365 PF15066 CAGE1: Cancer-associa 92.7 4.3 9.3E-05 48.7 16.9 44 651-697 391-434 (527)
366 COG2433 Uncharacterized conser 92.7 4.3 9.3E-05 50.1 17.3 73 653-734 477-556 (652)
367 TIGR00020 prfB peptide chain r 92.6 2.8 6E-05 49.2 15.3 142 582-724 2-163 (364)
368 PF09787 Golgin_A5: Golgin sub 92.6 6 0.00013 48.2 18.7 68 644-711 208-297 (511)
369 PRK10246 exonuclease subunit S 92.6 2.6 5.6E-05 55.4 16.8 27 692-718 857-883 (1047)
370 COG4026 Uncharacterized protei 92.6 2.2 4.7E-05 47.0 13.3 46 634-679 133-178 (290)
371 COG4026 Uncharacterized protei 92.6 0.75 1.6E-05 50.4 9.9 61 624-684 144-204 (290)
372 PRK09343 prefoldin subunit bet 92.5 3.4 7.3E-05 41.3 13.8 19 700-718 97-115 (121)
373 COG0497 RecN ATPase involved i 92.5 2.5 5.4E-05 52.0 15.3 37 584-620 168-204 (557)
374 KOG0963 Transcription factor/C 92.5 5 0.00011 49.7 17.6 26 659-684 244-269 (629)
375 PF09728 Taxilin: Myosin-like 92.5 8.9 0.00019 44.1 19.0 82 630-714 203-284 (309)
376 PF04582 Reo_sigmaC: Reovirus 92.5 0.11 2.4E-06 59.5 3.8 89 589-684 44-132 (326)
377 TIGR03752 conj_TIGR03752 integ 92.5 0.94 2E-05 54.3 11.5 13 741-753 171-183 (472)
378 PRK03598 putative efflux pump 92.5 2.8 6.1E-05 47.5 14.9 54 658-716 146-199 (331)
379 KOG4593 Mitotic checkpoint pro 92.4 7 0.00015 49.0 18.8 40 691-732 214-255 (716)
380 PF05622 HOOK: HOOK protein; 92.4 0.038 8.3E-07 68.9 0.0 18 603-620 317-334 (713)
381 PF01576 Myosin_tail_1: Myosin 92.3 0.039 8.4E-07 70.3 0.0 136 584-729 409-556 (859)
382 KOG1937 Uncharacterized conser 92.3 4.3 9.4E-05 48.5 16.2 52 603-654 267-318 (521)
383 COG2433 Uncharacterized conser 92.3 1.2 2.5E-05 54.8 12.0 92 624-722 424-515 (652)
384 PF07106 TBPIP: Tat binding pr 92.3 0.42 9.1E-06 49.6 7.5 88 630-720 73-163 (169)
385 KOG0243 Kinesin-like protein [ 92.3 3.3 7.1E-05 53.9 16.5 55 407-464 166-234 (1041)
386 PF05557 MAD: Mitotic checkpoi 92.2 1.1 2.3E-05 56.5 12.2 85 628-712 502-623 (722)
387 KOG3850 Predicted membrane pro 92.2 4.9 0.00011 47.2 16.2 15 437-451 76-90 (455)
388 KOG4223 Reticulocalbin, calume 92.2 0.2 4.2E-06 57.3 5.2 73 400-472 69-144 (325)
389 PRK00409 recombination and DNA 92.1 4.1 8.9E-05 52.1 17.2 50 660-710 573-622 (782)
390 KOG2751 Beclin-like protein [S 92.1 2.7 5.9E-05 49.9 14.4 129 603-733 192-335 (447)
391 KOG4403 Cell surface glycoprot 92.1 2 4.4E-05 50.8 13.2 33 402-434 60-95 (575)
392 TIGR00237 xseA exodeoxyribonuc 92.1 6.5 0.00014 47.0 17.9 36 646-681 303-339 (432)
393 PRK10698 phage shock protein P 92.1 16 0.00034 40.2 19.5 32 653-684 102-133 (222)
394 PTZ00446 vacuolar sorting prot 92.1 11 0.00024 40.9 17.8 126 587-719 27-154 (191)
395 PRK00578 prfB peptide chain re 92.1 3.5 7.6E-05 48.5 15.3 140 584-724 4-163 (367)
396 KOG4572 Predicted DNA-binding 92.1 2.8 6.1E-05 52.7 14.9 63 603-666 970-1032(1424)
397 PF05266 DUF724: Protein of un 92.0 4.6 9.9E-05 43.5 15.0 97 603-713 88-184 (190)
398 COG3096 MukB Uncharacterized p 92.0 5.9 0.00013 49.8 17.3 60 603-662 986-1045(1480)
399 PF09738 DUF2051: Double stran 92.0 2.1 4.6E-05 49.1 13.2 57 651-717 113-169 (302)
400 PF08581 Tup_N: Tup N-terminal 92.0 3.1 6.7E-05 39.2 11.9 67 635-714 10-76 (79)
401 PRK10929 putative mechanosensi 92.0 2.6 5.7E-05 55.6 15.6 48 585-632 185-232 (1109)
402 TIGR02473 flagell_FliJ flagell 92.0 14 0.0003 36.6 17.8 33 594-626 20-52 (141)
403 TIGR01541 tape_meas_lam_C phag 92.0 8.4 0.00018 44.8 18.0 70 668-748 94-163 (332)
404 PRK00106 hypothetical protein; 91.9 8 0.00017 47.7 18.6 15 656-670 103-117 (535)
405 PF00769 ERM: Ezrin/radixin/mo 91.9 5.2 0.00011 44.5 15.8 21 663-683 81-101 (246)
406 PF00015 MCPsignal: Methyl-acc 91.9 3.1 6.6E-05 43.2 13.3 10 708-717 200-209 (213)
407 COG3206 GumC Uncharacterized p 91.9 4.9 0.00011 47.9 16.6 77 633-716 317-401 (458)
408 PF00435 Spectrin: Spectrin re 91.8 3.3 7.3E-05 37.2 12.0 57 662-718 46-103 (105)
409 PF05483 SCP-1: Synaptonemal c 91.8 6.9 0.00015 48.9 17.8 97 589-685 178-275 (786)
410 KOG2129 Uncharacterized conser 91.8 12 0.00025 44.7 18.7 26 670-698 277-302 (552)
411 KOG2129 Uncharacterized conser 91.8 3.5 7.6E-05 48.8 14.6 108 604-711 182-301 (552)
412 KOG1937 Uncharacterized conser 91.8 6.7 0.00015 47.0 17.0 25 695-719 403-427 (521)
413 PF11180 DUF2968: Protein of u 91.8 2.4 5.1E-05 45.8 12.3 72 613-684 110-181 (192)
414 KOG4460 Nuclear pore complex, 91.7 5.6 0.00012 48.6 16.5 127 586-717 587-731 (741)
415 PF06120 Phage_HK97_TLTM: Tail 91.7 4.7 0.0001 46.3 15.4 34 650-683 134-167 (301)
416 KOG4657 Uncharacterized conser 91.7 7.9 0.00017 42.9 16.2 25 656-680 99-123 (246)
417 PF15456 Uds1: Up-regulated Du 91.7 2.6 5.6E-05 42.7 11.9 93 575-683 18-121 (124)
418 PRK10361 DNA recombination pro 91.7 9 0.0002 46.6 18.4 19 691-709 143-161 (475)
419 PF14788 EF-hand_10: EF hand; 91.6 0.42 9E-06 41.5 5.3 48 423-470 1-50 (51)
420 PF08702 Fib_alpha: Fibrinogen 91.6 7.8 0.00017 40.2 15.5 32 653-684 93-124 (146)
421 KOG1962 B-cell receptor-associ 91.5 1.8 3.8E-05 47.5 11.3 51 630-680 159-209 (216)
422 KOG1850 Myosin-like coiled-coi 91.4 13 0.00028 43.0 18.2 113 606-718 114-231 (391)
423 PF10046 BLOC1_2: Biogenesis o 91.4 3.5 7.7E-05 39.8 12.2 21 703-723 77-97 (99)
424 COG4913 Uncharacterized protei 91.4 4.5 9.9E-05 50.7 15.6 44 710-760 451-495 (1104)
425 KOG4807 F-actin binding protei 91.3 10 0.00023 44.7 17.6 63 641-706 415-481 (593)
426 PF05384 DegS: Sensor protein 91.3 17 0.00036 38.5 17.7 38 647-684 81-118 (159)
427 TIGR01010 BexC_CtrB_KpsE polys 91.3 1.8 4E-05 49.7 12.0 12 586-597 176-187 (362)
428 PF14915 CCDC144C: CCDC144C pr 91.3 14 0.00031 42.4 18.3 49 636-684 193-241 (305)
429 KOG4065 Uncharacterized conser 91.3 0.28 6E-06 49.1 4.5 58 10-67 70-143 (144)
430 cd00632 Prefoldin_beta Prefold 91.2 4.5 9.8E-05 39.1 12.7 24 604-627 16-39 (105)
431 KOG4807 F-actin binding protei 91.2 6.4 0.00014 46.4 15.8 56 629-684 421-476 (593)
432 KOG2685 Cystoskeletal protein 91.2 8.2 0.00018 45.9 16.9 63 586-648 255-318 (421)
433 PRK10246 exonuclease subunit S 91.2 9.2 0.0002 50.5 19.4 70 645-714 719-803 (1047)
434 PRK10869 recombination and rep 91.2 4.2 9E-05 50.0 15.4 92 622-713 261-366 (553)
435 KOG4251 Calcium binding protei 91.2 0.16 3.5E-06 56.1 3.1 61 6-66 100-165 (362)
436 KOG0979 Structural maintenance 91.1 4.6 0.0001 52.2 15.8 66 618-683 293-358 (1072)
437 KOG0239 Kinesin (KAR3 subfamil 91.1 3.1 6.8E-05 52.3 14.4 33 638-670 243-275 (670)
438 PF05557 MAD: Mitotic checkpoi 91.1 0.064 1.4E-06 67.1 0.0 54 585-638 91-144 (722)
439 PF13863 DUF4200: Domain of un 91.1 12 0.00025 36.9 15.6 43 642-684 66-108 (126)
440 PF04912 Dynamitin: Dynamitin 91.1 5.4 0.00012 46.8 15.6 123 582-712 248-385 (388)
441 PF08581 Tup_N: Tup N-terminal 91.0 3.5 7.5E-05 38.8 11.2 64 589-652 6-69 (79)
442 smart00503 SynN Syntaxin N-ter 91.0 7.5 0.00016 37.2 14.0 17 604-620 18-34 (117)
443 PF04871 Uso1_p115_C: Uso1 / p 91.0 5.6 0.00012 40.7 13.7 28 695-722 84-114 (136)
444 PF04949 Transcrip_act: Transc 91.0 8.7 0.00019 40.1 14.9 62 623-684 85-146 (159)
445 KOG4673 Transcription factor T 91.0 12 0.00026 47.0 18.4 24 695-718 605-631 (961)
446 cd00176 SPEC Spectrin repeats, 91.0 5.5 0.00012 40.3 13.8 30 632-661 75-104 (213)
447 smart00502 BBC B-Box C-termina 91.0 5.8 0.00012 37.8 13.2 48 666-716 74-122 (127)
448 cd07627 BAR_Vps5p The Bin/Amph 91.0 25 0.00054 38.2 19.5 51 664-717 115-165 (216)
449 KOG3156 Uncharacterized membra 90.9 4.5 9.7E-05 44.3 13.5 77 581-660 63-140 (220)
450 TIGR03752 conj_TIGR03752 integ 90.9 2 4.4E-05 51.7 11.9 12 896-907 348-359 (472)
451 PF10212 TTKRSYEDQ: Predicted 90.9 4.4 9.5E-05 49.4 14.8 15 58-72 83-97 (518)
452 PLN02939 transferase, transfer 90.9 4.2 9.1E-05 52.9 15.5 52 621-672 225-279 (977)
453 PRK10476 multidrug resistance 90.9 6.3 0.00014 45.1 15.6 26 659-684 154-179 (346)
454 KOG0046 Ca2+-binding actin-bun 90.9 0.53 1.2E-05 56.7 7.1 65 5-70 17-86 (627)
455 COG5283 Phage-related tail pro 90.8 5.4 0.00012 52.5 16.2 79 582-660 31-109 (1213)
456 PF15254 CCDC14: Coiled-coil d 90.7 4.3 9.4E-05 51.2 14.8 50 635-684 493-542 (861)
457 PF10212 TTKRSYEDQ: Predicted 90.7 3.7 8.1E-05 50.0 14.0 69 606-684 446-514 (518)
458 PRK05689 fliJ flagellar biosyn 90.7 21 0.00045 36.2 18.2 82 595-676 24-111 (147)
459 KOG4360 Uncharacterized coiled 90.6 14 0.00031 45.0 18.3 47 654-700 272-318 (596)
460 PF15035 Rootletin: Ciliary ro 90.6 5.1 0.00011 42.9 13.5 50 635-684 59-108 (182)
461 PF00769 ERM: Ezrin/radixin/mo 90.6 7.6 0.00016 43.2 15.4 63 655-720 66-129 (246)
462 TIGR03319 YmdA_YtgF conserved 90.5 12 0.00026 45.8 18.3 8 726-733 206-213 (514)
463 KOG0972 Huntingtin interacting 90.5 4.7 0.0001 46.0 13.5 85 599-683 264-354 (384)
464 PF06721 DUF1204: Protein of u 90.4 3.7 8.1E-05 44.1 12.1 39 691-729 87-128 (228)
465 cd07651 F-BAR_PombeCdc15_like 90.4 14 0.0003 40.4 17.0 35 624-658 109-143 (236)
466 TIGR00998 8a0101 efflux pump m 90.4 13 0.00027 42.0 17.2 12 585-596 85-96 (334)
467 KOG1962 B-cell receptor-associ 90.3 4.5 9.6E-05 44.5 13.0 63 655-720 149-211 (216)
468 PF15254 CCDC14: Coiled-coil d 90.2 8.9 0.00019 48.6 16.7 29 688-716 522-550 (861)
469 PF14788 EF-hand_10: EF hand; 90.2 0.69 1.5E-05 40.2 5.4 47 23-69 1-49 (51)
470 smart00054 EFh EF-hand, calciu 90.1 0.32 6.9E-06 33.4 2.9 26 43-68 2-27 (29)
471 cd07653 F-BAR_CIP4-like The F- 90.0 18 0.00039 39.6 17.6 88 610-703 100-194 (251)
472 TIGR02338 gimC_beta prefoldin, 90.0 3.1 6.8E-05 40.6 10.6 30 587-616 10-39 (110)
473 PLN03229 acetyl-coenzyme A car 90.0 6.4 0.00014 49.8 15.5 70 669-741 576-650 (762)
474 PF03962 Mnd1: Mnd1 family; I 90.0 8.2 0.00018 41.4 14.5 39 581-619 63-101 (188)
475 KOG4251 Calcium binding protei 89.9 0.27 5.8E-06 54.5 3.4 62 404-465 98-164 (362)
476 PF05010 TACC: Transforming ac 89.9 21 0.00045 39.2 17.6 52 661-718 115-166 (207)
477 PF06248 Zw10: Centromere/kine 89.9 9.6 0.00021 47.0 17.0 60 666-725 124-185 (593)
478 PF15290 Syntaphilin: Golgi-lo 89.8 1.5 3.3E-05 49.5 9.1 24 661-684 146-169 (305)
479 PF01920 Prefoldin_2: Prefoldi 89.7 4.1 8.9E-05 38.4 10.9 18 604-621 15-32 (106)
480 PF10046 BLOC1_2: Biogenesis o 89.7 7 0.00015 37.8 12.5 57 624-680 37-96 (99)
481 KOG3647 Predicted coiled-coil 89.7 9.2 0.0002 43.3 14.8 77 603-679 107-183 (338)
482 KOG3647 Predicted coiled-coil 89.6 6.9 0.00015 44.3 13.8 124 634-766 110-244 (338)
483 PRK07720 fliJ flagellar biosyn 89.6 25 0.00055 35.6 17.6 82 585-673 21-108 (146)
484 PF06810 Phage_GP20: Phage min 89.6 1.8 3.9E-05 45.1 9.0 35 637-671 14-48 (155)
485 COG1730 GIM5 Predicted prefold 89.6 13 0.00028 38.7 15.0 46 663-711 93-138 (145)
486 PF04740 LXG: LXG domain of WX 89.6 18 0.00039 38.2 16.7 22 692-713 142-163 (204)
487 KOG4571 Activating transcripti 89.5 1.2 2.6E-05 50.6 8.1 53 662-717 239-291 (294)
488 cd07664 BAR_SNX2 The Bin/Amphi 89.5 15 0.00032 40.9 16.4 48 666-718 135-182 (234)
489 COG4477 EzrA Negative regulato 89.4 5.9 0.00013 48.4 14.1 55 653-710 378-432 (570)
490 PF15294 Leu_zip: Leucine zipp 89.4 4.5 9.7E-05 46.0 12.5 128 585-712 144-277 (278)
491 PF01576 Myosin_tail_1: Myosin 89.4 0.11 2.3E-06 66.5 0.0 20 692-711 289-308 (859)
492 KOG0040 Ca2+-binding actin-bun 89.4 0.62 1.3E-05 61.4 6.5 79 6-87 2252-2339(2399)
493 KOG0038 Ca2+-binding kinase in 89.4 0.46 1E-05 49.3 4.5 53 412-464 113-172 (189)
494 PF10267 Tmemb_cc2: Predicted 89.4 15 0.00032 43.9 17.2 17 437-453 40-56 (395)
495 KOG0962 DNA repair protein RAD 89.4 8.4 0.00018 51.3 16.5 35 647-681 875-909 (1294)
496 PF13949 ALIX_LYPXL_bnd: ALIX 89.4 17 0.00036 40.5 17.0 43 603-645 24-66 (296)
497 KOG4677 Golgi integral membran 89.3 4.2 9.2E-05 48.6 12.6 139 585-731 257-404 (554)
498 PF05546 She9_MDM33: She9 / Md 89.3 6.4 0.00014 43.1 13.1 99 581-683 33-132 (207)
499 TIGR03794 NHPM_micro_HlyD NHPM 89.3 6.9 0.00015 46.0 14.6 143 590-732 92-260 (421)
500 TIGR01069 mutS2 MutS2 family p 89.2 6.9 0.00015 50.1 15.5 115 593-709 496-610 (771)
No 1
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-46 Score=457.76 Aligned_cols=800 Identities=26% Similarity=0.328 Sum_probs=453.1
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcCCCCCHHH
Q 001269 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPDI 83 (1111)
Q Consensus 4 ~~~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SGLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValAQ~G~~Lspd~ 83 (1111)
.....|+.+|..+|..++|+|+|.+++.||..+||+..+|++||.++|..+.|+|++.+||+|||||++||+|.+++...
T Consensus 8 ~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~ 87 (847)
T KOG0998|consen 8 PGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKK 87 (847)
T ss_pred CccchHHHhhhccCcccCCcccHHHhhhhhhccccchhhhhccccccccccCCccccccccccchHhhhhhcccCcCccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred HHhhhcCCCCCCCCCCccCCCCCccccccCCcccCCCCCCCCCCCCCCCcCCCCCCCCCCccccccccCCCCCCCCCCCC
Q 001269 84 VKAALYGPAATKIPPPQINLSATPAQQINSTAAVSVPQMSVPTQMAPQNFGFRGPGAPNVSQVQQQSIRPYQAAPHPTQG 163 (1111)
Q Consensus 84 L~~~~~~~~~~~iPpP~l~~~~~p~p~~~~~~~~~~~~~~~~~p~~~q~~~~~~~g~~~~~~~~~~~~rp~~~~~~~~~~ 163 (1111)
+ +++...+|+|++.....|.++...+ . ..+..+|....+.
T Consensus 88 ~-----~~~~~~pp~~~~~~~~~~~~~~~~~-~------------------s~~~~~p~~~~qe---------------- 127 (847)
T KOG0998|consen 88 V-----LPASAVPPPPKISHDTSPPSRPSSS-T------------------SAAPFVPAITPQE---------------- 127 (847)
T ss_pred c-----ccccCCCCCCccCccCCCcccCCCC-C------------------CCcccCCCCCHHH----------------
Confidence 4 3455678888877666666554321 0 0111111111110
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCcccccCCCCC
Q 001269 164 SVGPDFSRGGSVMGQTQVMPGSTAPRPPQTMPAGTAPRPPQSMPASTSPHPPQSMPESTAGLNVPNSNISSDWLSGGAGG 243 (1111)
Q Consensus 164 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~g 243 (1111)
+..++.++++ +.|. +.-+.|+++++++++++|+.+|||
T Consensus 128 --------~aky~q~f~s-----------~~p~------------------~g~~sg~~~~pil~~s~Lp~~~l~----- 165 (847)
T KOG0998|consen 128 --------QAKYDQIFRS-----------LSPS------------------NGLLSGDKAKPILLNSKLPSDVLG----- 165 (847)
T ss_pred --------HHHHHHHHhc-----------cCCC------------------CCccccchhhhhhhcCCCChhhhc-----
Confidence 1223444421 1111 234578899999999999999998
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCccccccc---ccccCCCCCCCCCCCCCCCCCC
Q 001269 244 ASTGSRAISPSTPLMPTNPQTPVSSSSQLINNKSKALVPSGNGFASDSVFGGDVF---SAITTSPKQGPSSSAYSASTSP 320 (1111)
Q Consensus 244 ~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gnG~~s~s~f~~d~f---sA~~~~~~q~p~~~~~~~~~~~ 320 (1111)
.+| .+ .+.+.+|..+...|..+|. ....- ..+|++.-.
T Consensus 166 ---~iw---------------------~l-------~d~d~~g~Ld~~ef~~am~l~~~~l~~--~~~p~P~~~------ 206 (847)
T KOG0998|consen 166 ---RIW---------------------EL-------SDIDKDGNLDRDEFAVAMHLINDLLNG--NSEPVPSRL------ 206 (847)
T ss_pred ---ccc---------------------cc-------ccccccCCCChhhhhhhhhHHHHHhhc--ccCCCCccC------
Confidence 445 12 2677899999999998884 32220 013332222
Q ss_pred CCCCccCCCCCCCCCCCC----------CCCchhhhhcccCCCCCCCCcccccCCCCCCccCCCCCCCCCCcccCCCCCC
Q 001269 321 TSSANVPVSGAAQPSSKP----------YPLNSLQSAFSMQPAGSQIPQNQLSLNPGQKISSQSSSFASAGISVGSGNST 390 (1111)
Q Consensus 321 ~ss~i~p~s~~~~p~~~~----------~~~~~lqs~~~~~p~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~~~~~ 390 (1111)
+..+||.++..-..... ......+..+.+.+...++ ...+++ ..... ..
T Consensus 207 -p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~------------~~~~s~-------~~~~~-~~ 265 (847)
T KOG0998|consen 207 -PPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSAL------------NSNPSL-------SSLSL-AS 265 (847)
T ss_pred -CcccCCcchhcccccCcccccccccccccccccccccccccchhcc------------cCCccc-------ccccc-cc
Confidence 22223433332111110 0001111111111111111 111111 11111 11
Q ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHH
Q 001269 391 PDNSQVPW-PKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYL 469 (1111)
Q Consensus 391 s~~~~~dW-p~ISpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSgLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhL 469 (1111)
.......| |+|++.++.+|.+||.++|++.+|+|++.+++++|+.+||+...|++||.|+|++++|+|+++|||++|||
T Consensus 266 ~~q~~~s~~~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 266 SMQLIVSWSPKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred ccccccccCcccChHHHHHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 23455677 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-hcCCCCCCCCCCCccccccccccCCCCCC-CCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 001269 470 MERY-REGRPLPAVLPRNVMFDETLLSMTSQPPN-AGYGNAAWGPGPGFGPQQVMRPQAMTPAGALRPPNLPTHPTADGA 547 (1111)
Q Consensus 470 I~~~-~~G~~LP~~LPpsLip~s~~~~~~~qp~~-~~y~l~s~q~~p~~qqQ~~~gs~~~~Pts~~~Pp~~~l~~~~~~~ 547 (1111)
+.++ .+|+.||.+||.+|+++..+. +..+.. ..++ ++|........+..+....+.+....++... +.+..
T Consensus 346 ~~~~~~~g~~lP~vl~~s~~p~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~----~~~~~ 418 (847)
T KOG0998|consen 346 LEQKRAEGRSLPSVLPSSLIPSENRK--QTNPTTRASTA-ESPSSEQSSLAELKSLALSIASNPREKPRLE----QSSSE 418 (847)
T ss_pred hhhhhhcCCCCcccccccccCccccc--cCCcccccccc-ccCCccccccccccccccccccccccccccc----ccccc
Confidence 9999 689999999999999995432 111100 0011 1222111100011111111001111111000 00000
Q ss_pred cccCCCCCCCCccchhhhccCCccccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001269 548 RMLNQQKPRAPVLDDNLANQLDNGEYSADSKLQDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEI 627 (1111)
Q Consensus 548 ~~~~~~~s~~P~ld~~l~~~ld~ee~~~L~~~qEatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~ 627 (1111)
....+..-..+++ ++...|...+....+......+...++.++.+++++.+++...++++++++..++++|..+|+.+
T Consensus 419 ~~~~~~~~~s~~~--~~~~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~ 496 (847)
T KOG0998|consen 419 APRTTPVKTSPVL--ELANELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLL 496 (847)
T ss_pred ccccCcccccccc--cchhhhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhc
Confidence 0000011112221 22334444433333332233445678899999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 001269 628 TERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEEL 707 (1111)
Q Consensus 628 ~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL 707 (1111)
..++...++++++|.++|++..+|+..|+..|...+.++..++.+|..|..++...+ ..-+.
T Consensus 497 ~~~~~~~~~ei~~~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~---s~~~~--------------- 558 (847)
T KOG0998|consen 497 PLQLSNDNREISSLEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMADTR---SKSTL--------------- 558 (847)
T ss_pred ccccccchhhHHHHHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhc---ccchh---------------
Confidence 999998999999999555555555544444444444443333333333333333333 44444
Q ss_pred HHHHHHHHHHhccccccceeeecCCCcCCCcccccccchhhhhhccccCCCccccccccCCCCC---C-------CCCCc
Q 001269 708 LKALTERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWDEDWDKFEDAGFGNEITFDVKNASAS---P-------NTNSS 777 (1111)
Q Consensus 708 ~kqL~E~~~~lgvk~k~~~~ielp~gw~~~~~e~a~~w~e~wd~~~d~~f~~~~t~~~~~~~~~---~-------~~~~~ 777 (1111)
.++.|.|+..++|....|.++|++..+ -..+++.-.+++.+.. + +.|..
T Consensus 559 --------------------l~~~~~~~~~~~~~~~~~~k~~n~~~~-~s~~~l~~~~e~~~~~~~~~~~~d~~~~~k~~ 617 (847)
T KOG0998|consen 559 --------------------LDDSFKVGMELFEQLLKGSKLVNGKDQ-NSSTELAGYLEGTINGKGLETSMDDSKEQKNE 617 (847)
T ss_pred --------------------hhhhhhhhhhhhhhhhhhhhccccccc-cchhhhhhhcccccccccccccccchhhcccc
Confidence 444444444444444444444444433 2223343333333321 0 00000
Q ss_pred cccCCCC-CCCCCCCCCCcchhHh-hhhhhccccccccCCccccCCccccccCCCCCCCCCCCCCCCCCCccccccCCcc
Q 001269 778 VQMENTS-PDGSPSADNFANVDER-QRELMNAGERAFESESAYTHSEDESARSPHDSPAGKAAPESPSQNFSDVFRSSEA 855 (1111)
Q Consensus 778 ~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~p~~s~~~~~~~~s~~~~~~~~~~~~~~ 855 (1111)
.++...+ .|........++++.. +.+. |..........+...|+++-... ++.+|.
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~t~~~~p~~~~~~~-~~~~~~-------- 675 (847)
T KOG0998|consen 618 DDKKSELSTDPEENPDSYSSVPSASRGDP-------------FAGDKNKEETTSSSDPFGGDPVK-ESPKFE-------- 675 (847)
T ss_pred cccccccccCcccCCcccccccccccCCc-------------cccCchhhhcccccCCccccccc-cCCCcc--------
Confidence 0011111 1211122222222211 1011 11111122234444677766555 555553
Q ss_pred ccccccccCCCCCCCCCCCCCccccccCCCCCCC----CCCCCcccCCCCCCCCcccCCCCCCCcccccCCccccCCCCC
Q 001269 856 DAETHRSFDDSTWGAFDNDDTDSVWGFNTKGSNS----DKNRDFFGSSNFGGSPIRTESPTADSTFHKKSPFRFDDSVPS 931 (1111)
Q Consensus 856 d~~~~~~~d~~~wg~fd~~d~ds~w~~~~~~~~~----~~~~~~f~s~~~~~~p~r~~sp~~~~~~~~~~~f~f~dsvp~ 931 (1111)
..+.+||..+|-.|+... +..|..+...-.. ..+..|+... ..++.....|+....|.+...|
T Consensus 676 --~ss~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~p~~--------~~~t~~~~~~~~~~~~~~~~~~-- 742 (847)
T KOG0998|consen 676 --SSSEFFDAGTPFDKFTSP-DPFPTQSASSPSPLEPFASSDPFPPSS--------ASPTSPSDPFQPVPSFPPQPFV-- 742 (847)
T ss_pred --ccccccccCCccccccCC-CCcccCCCCCCCCCcccCCCCCCCCCC--------CCCCCcccccccccccCccccC--
Confidence 245678888887555444 8888887444322 2234433322 2222222223333333233222
Q ss_pred CcccCCCCCCCCCCcccCCccCccccccccccCCCCCCCCCccccc--ccccccCCCCCCCCCCcccccccccCCCCCCC
Q 001269 932 TPLSRFGNSPPRYSEASSDHFDSFSRFDSFNVHDSGFSSHPERLTR--FDSMNSTNDFGPFSSQPEKVSRFDSMNSSKDF 1009 (1111)
Q Consensus 932 tp~~~~~~s~pr~~e~~~~~~~~~srfdsf~~~~~~~~~~~~~~sr--fds~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1111)
.+|..|++|-+=.-.+ .+ ++.++= +++.-...+ .+...+..++||+. .++
T Consensus 743 ------------------~~~~d~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~- 794 (847)
T KOG0998|consen 743 ------------------PEFADFSEFSSANNSE--LF--RDSTSASFEESVIKSEA---TTPADNSDSDGDSV--PQD- 794 (847)
T ss_pred ------------------CCCcccccccccCCcc--cc--ccccccccccccccccc---CCcccCcCCCCCCc--cCC-
Confidence 1122233332211100 11 111110 222222222 23356777777777 555
Q ss_pred CCCCCCCCcccccccCccCCCCCCCCcccccccccccccccccCCCCcccccccccc
Q 001269 1010 GPFSSQPEKFSRFDSMSSTSDFGHFSSQTEKFSRFDSMNSARDFGGDKLSRFDSMSS 1066 (1111)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1111)
. ...+++||++.|+..+... ++|.+|++.||. |+.+-.+.|+++|.+
T Consensus 795 ~-----~~~~s~~~~~~s~~~~~~~----~~f~~~~~~~s~-~~~~~~~~~~~~~~~ 841 (847)
T KOG0998|consen 795 P-----GGSASAFDSLSSTATPSLA----DKFSPFSSFNSS-DDSSPSLFLPPFSSS 841 (847)
T ss_pred C-----CcccchhccccccCCcccc----ccccccccccCC-cccccccccCccccC
Confidence 3 3667888888888887743 488888888888 888888888888876
No 2
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-38 Score=366.87 Aligned_cols=101 Identities=34% Similarity=0.591 Sum_probs=96.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 001269 391 PDNSQVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1111)
Q Consensus 391 s~~~~~dWp~ISpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSgLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI 470 (1111)
+.+-...| .|....|.+|.++|+.+|+.+.|||||.++|.+|++|+||...|++||.|+|+|+||+|+.+||++|||||
T Consensus 180 s~~q~~eW-AVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 180 SVNQLEEW-AVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred hhhhhhhc-cccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHH
Confidence 33445689 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCcccccc
Q 001269 471 ERYREGRPLPAVLPRNVMFDET 492 (1111)
Q Consensus 471 ~~~~~G~~LP~~LPpsLip~s~ 492 (1111)
+.++.|.+||.+||+.|+|++-
T Consensus 259 ema~sGq~lP~tlP~E~Vpp~~ 280 (1118)
T KOG1029|consen 259 EMAKSGQPLPKTLPPELVPPSF 280 (1118)
T ss_pred HHHhcCCCCCCCCChhhcCccc
Confidence 9999999999999999999973
No 3
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.89 E-value=7.2e-24 Score=201.73 Aligned_cols=94 Identities=43% Similarity=0.844 Sum_probs=82.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhc--C
Q 001269 399 PKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYRE--G 476 (1111)
Q Consensus 399 p~ISpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSgLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~~~~--G 476 (1111)
|.|+++|+++|+++|..+|. .+|+|+|++++.+|+++||+.++|++||+|+|+|+||+|+++|||+|||||+++++ |
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~ 80 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNG 80 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCC
Confidence 57999999999999999994 78999999999999999999999999999999999999999999999999999875 5
Q ss_pred CCCCCCCCCCccccccc
Q 001269 477 RPLPAVLPRNVMFDETL 493 (1111)
Q Consensus 477 ~~LP~~LPpsLip~s~~ 493 (1111)
.+||.+||+.|+|++++
T Consensus 81 ~~lP~~LP~~L~p~s~~ 97 (104)
T PF12763_consen 81 KPLPSSLPPSLIPPSKR 97 (104)
T ss_dssp S---SSSSGGGSSSCG-
T ss_pred CCCchhcCHHHCCCCcc
Confidence 69999999999999864
No 4
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.1e-20 Score=227.90 Aligned_cols=313 Identities=20% Similarity=0.297 Sum_probs=202.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHh
Q 001269 395 QVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYR 474 (1111)
Q Consensus 395 ~~dWp~ISpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSgLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~~~ 474 (1111)
..-| .|++.++.+|+++|..+.+ ..|.++|+.++.+|++++|+...|.+||+|+|+|.+|.|++.||++|||||+.++
T Consensus 118 ~~~p-~~~~qe~aky~q~f~s~~p-~~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l 195 (847)
T KOG0998|consen 118 PFVP-AITPQEQAKYDQIFRSLSP-SNGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLL 195 (847)
T ss_pred ccCC-CCCHHHHHHHHHHHhccCC-CCCccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHHHHHh
Confidence 4568 7999999999999999996 5999999999999999999999999999999999999999999999999999999
Q ss_pred c--CCCCCCCCCCCccccccccccCCC-----CC----------CCC-------------------------CCCCCCCC
Q 001269 475 E--GRPLPAVLPRNVMFDETLLSMTSQ-----PP----------NAG-------------------------YGNAAWGP 512 (1111)
Q Consensus 475 ~--G~~LP~~LPpsLip~s~~~~~~~q-----p~----------~~~-------------------------y~l~s~q~ 512 (1111)
+ -.++|..||+.+|++++....... +. +.. +....|.
T Consensus 196 ~~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~- 274 (847)
T KOG0998|consen 196 NGNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWS- 274 (847)
T ss_pred hcccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccC-
Confidence 9 589999999999999765311110 00 000 0001110
Q ss_pred CCCCCC-----------Cc-----c--CC--CCC-CCCCCCCCCCCC---------------------CCCC--------
Q 001269 513 GPGFGP-----------QQ-----V--MR--PQA-MTPAGALRPPNL---------------------PTHP-------- 542 (1111)
Q Consensus 513 ~p~~qq-----------Q~-----~--~g--s~~-~~Pts~~~Pp~~---------------------~l~~-------- 542 (1111)
+-+.+ |. + .+ ++. .++....++.+. .++.
T Consensus 275 -~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~~~~g 353 (847)
T KOG0998|consen 275 -PKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQKRAEG 353 (847)
T ss_pred -cccChHHHHHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhhhhhhhhhhcC
Confidence 00000 00 0 00 000 000000000000 0000
Q ss_pred -----------CCCccc-ccCCCCCC-----CCc---cch-------hhhccCCcccc----ccccccchhhhhhhhHHH
Q 001269 543 -----------TADGAR-MLNQQKPR-----APV---LDD-------NLANQLDNGEY----SADSKLQDSTTAGKKVDE 591 (1111)
Q Consensus 543 -----------~~~~~~-~~~~~~s~-----~P~---ld~-------~l~~~ld~ee~----~~L~~~qEatdLtkeLAn 591 (1111)
.+.... ..+ +... .+. .+. .-+..+..+.. ..+........+..++.+
T Consensus 354 ~~lP~vl~~s~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~ 432 (847)
T KOG0998|consen 354 RSLPSVLPSSLIPSENRKQTN-PTTRASTAESPSSEQSSLAELKSLALSIASNPREKPRLEQSSSEAPRTTPVKTSPVLE 432 (847)
T ss_pred CCCcccccccccCccccccCC-ccccccccccCCccccccccccccccccccccccccccccccccccccCccccccccc
Confidence 000000 000 0000 000 000 00011111111 111111111123455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 592 REKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQE 671 (1111)
Q Consensus 592 LenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~ 671 (1111)
|.+++ ..+.++.++|...+.....+++++..+++..+..+...|.+++++...+.++-..++.++..+.....
T Consensus 433 ~~~~l-------~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ 505 (847)
T KOG0998|consen 433 LANEL-------SNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNR 505 (847)
T ss_pred chhhh-------hhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchh
Confidence 66666 77778888888888877788999999999889999999999999999888888888888777777777
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 001269 672 RKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDV 722 (1111)
Q Consensus 672 EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk~ 722 (1111)
++..|+.+|..++ ++...|...+..+..++++|++.|...|..+.+..
T Consensus 506 ei~~~~~~ln~~~---qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~ 553 (847)
T KOG0998|consen 506 EISSLEKELNELQ---QQLSVLEGSVKAIESQVENLQKELLDLIYEMADTR 553 (847)
T ss_pred hHHHHHHHHhhhH---HHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhc
Confidence 7777777777777 44477777777777779999999999999876643
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.1e-19 Score=210.05 Aligned_cols=94 Identities=38% Similarity=0.663 Sum_probs=89.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHh
Q 001269 395 QVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYR 474 (1111)
Q Consensus 395 ~~dWp~ISpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSgLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~~~ 474 (1111)
...| .||.+|+++|+..|..|- .+.|||+|+++|+||++||||..+|++||.|+|.|+||++|..||.|||+||..|+
T Consensus 5 ~n~W-avT~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkL 82 (1118)
T KOG1029|consen 5 TNPW-AVTDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKL 82 (1118)
T ss_pred CCcc-ccchHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHh
Confidence 3579 999999999999999997 58999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcccc
Q 001269 475 EGRPLPAVLPRNVMFD 490 (1111)
Q Consensus 475 ~G~~LP~~LPpsLip~ 490 (1111)
.|++||.+|||+|+-.
T Consensus 83 qG~~lP~~LPPsll~~ 98 (1118)
T KOG1029|consen 83 QGIQLPPVLPPSLLKQ 98 (1118)
T ss_pred cCCcCCCCCChHHhcc
Confidence 9999999999977644
No 6
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=4.5e-19 Score=200.36 Aligned_cols=100 Identities=36% Similarity=0.694 Sum_probs=96.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHH
Q 001269 390 TPDNSQVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYL 469 (1111)
Q Consensus 390 ~s~~~~~dWp~ISpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSgLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhL 469 (1111)
.+.....+| .||+|+|++|-+.|..+..|-.|+|+|..+++||.+++||.++|.+||.|+|.|+||-|++.|||.||||
T Consensus 215 nsS~~d~pw-~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 215 NSSELDTPW-QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred cccccCCcc-ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 355678899 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCcccc
Q 001269 470 MERYREGRPLPAVLPRNVMFD 490 (1111)
Q Consensus 470 I~~~~~G~~LP~~LPpsLip~ 490 (1111)
|-.+++|++||..||.+|.|-
T Consensus 294 VVaRkNgypLPe~LP~~L~P~ 314 (737)
T KOG1955|consen 294 VVARKNGYPLPESLPHCLHPN 314 (737)
T ss_pred eeecccCCCCCCCCccccChh
Confidence 999999999999999999986
No 7
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.70 E-value=1.3e-17 Score=159.04 Aligned_cols=84 Identities=32% Similarity=0.543 Sum_probs=71.8
Q ss_pred CccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcC--CCCC
Q 001269 3 GPNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK--RELT 80 (1111)
Q Consensus 3 ~~~~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SGLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValAQ~G--~~Ls 80 (1111)
..+++.|+.+|+.+|. ++|+|+|++++.||.+||||.++|++||+|+|.|+||+|+++||++|||||.++++| .+|+
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~~~lP 84 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNGKPLP 84 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCCCCCc
Confidence 3578999999999996 689999999999999999999999999999999999999999999999999998876 4775
Q ss_pred HHHHHhh
Q 001269 81 PDIVKAA 87 (1111)
Q Consensus 81 pd~L~~~ 87 (1111)
..+...+
T Consensus 85 ~~LP~~L 91 (104)
T PF12763_consen 85 SSLPPSL 91 (104)
T ss_dssp SSSSGGG
T ss_pred hhcCHHH
Confidence 4444443
No 8
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.67 E-value=2.8e-16 Score=145.87 Aligned_cols=94 Identities=35% Similarity=0.731 Sum_probs=92.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcC
Q 001269 397 PWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYREG 476 (1111)
Q Consensus 397 dWp~ISpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSgLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~~~~G 476 (1111)
+| +|+.+++.+|..+|..+|+|++|+|+..+++.+|...+++.+++.+||.++|.+++|.|+++||+.+|+++.+++.|
T Consensus 1 ~~-~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g 79 (96)
T smart00027 1 DW-AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNG 79 (96)
T ss_pred CC-CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcC
Confidence 69 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccc
Q 001269 477 RPLPAVLPRNVMFDE 491 (1111)
Q Consensus 477 ~~LP~~LPpsLip~s 491 (1111)
++||..||+.|++++
T Consensus 80 ~~~~~~~~~~~~~~~ 94 (96)
T smart00027 80 YPIPASLPPSLIPPS 94 (96)
T ss_pred CCCCccCCHhhcCCC
Confidence 999999999999984
No 9
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=99.61 E-value=3.3e-15 Score=155.65 Aligned_cols=178 Identities=12% Similarity=0.159 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccccCCCCCCCCCCCCC-CCCCCCCCCCccCCCCCCCCCCCCCC--
Q 001269 459 SLREFCFALYLMERYREGRPLPAVLPRNVMFDETLLSMTSQPPNAGYGNAA-WGPGPGFGPQQVMRPQAMTPAGALRP-- 535 (1111)
Q Consensus 459 dkdEF~IAMhLI~~~~~G~~LP~~LPpsLip~s~~~~~~~qp~~~~y~l~s-~q~~p~~qqQ~~~gs~~~~Pts~~~P-- 535 (1111)
|+|.+++++|+++++.+|+.||..||++|... | .+.++ .|++.. .+ ..+.++... .+++.+-
T Consensus 1 dKD~~L~FLHiLnqR~~G~rIPr~vPasLras---f-~k~~i---~Ydl~~~~~--s~~~~~~~~------~t~t~~k~~ 65 (195)
T PF12761_consen 1 DKDQCLYFLHILNQRNDGYRIPREVPASLRAS---F-EKEQI---DYDLNSSPQ--SRWKPSSST------STSTGRKAK 65 (195)
T ss_pred CCcchhhHHHHHhccccCCcCCccCCHHHHHH---H-hcCCc---Cccccchhh--cccccCCCC------CCcchhhhh
Confidence 57889999999999999999999999999988 7 66666 699984 22 111111000 1100000
Q ss_pred CCCCC-C-CCCCcc-cccCCCCCCCCccchhhhccCCccccccccccchhhhhhhhHHHHHHHHHHHHHH----------
Q 001269 536 PNLPT-H-PTADGA-RMLNQQKPRAPVLDDNLANQLDNGEYSADSKLQDSTTAGKKVDEREKVILDSREK---------- 602 (1111)
Q Consensus 536 p~~~l-~-~~~~~~-~~~~~~~s~~P~ld~~l~~~ld~ee~~~L~~~qEatdLtkeLAnLenQ~ed~~ek---------- 602 (1111)
+-..+ + .+..+. .....+.++.+. +. +||.+.|.+||++|+.+|+++.++
T Consensus 66 f~~~yl~rlG~~~~s~~~~gTdfS~~~-------~~----------dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~ 128 (195)
T PF12761_consen 66 FGDSYLSRLGRGGKSYKEKGTDFSATE-------GT----------DWEEVRLKRELAELEEKLSKVEQAAESRRSDTDS 128 (195)
T ss_pred hhHHHHHHhccccCCCCCCCCCCCCCC-------CC----------chHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcc
Confidence 00000 0 000000 000002222221 22 299999999999999999986553
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 603 -IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQ 678 (1111)
Q Consensus 603 -ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeq 678 (1111)
.+.++.|+|+|+.||.+. |+++.+.......+|..|+ .+|+.||+||.+||.+|+.++++|++|++
T Consensus 129 ~~~lvk~e~EqLL~YK~~q---l~~~~~~~~~~~~~l~~v~-------~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 129 KPALVKREFEQLLDYKERQ---LRELEEGRSKSGKNLKSVR-------EDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred hHHHHHHHHHHHHHHHHHH---HHhhhccCCCCCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 477899999999999998 6666544445688899999 99999999999999999999999999974
No 10
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=8.4e-14 Score=155.43 Aligned_cols=99 Identities=28% Similarity=0.582 Sum_probs=92.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q 001269 392 DNSQVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLME 471 (1111)
Q Consensus 392 ~~~~~dWp~ISpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSgLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~ 471 (1111)
+..+..| ++ ..||-.|++||..+- .-+|+|+|..++.-|.+++||..+|.+||.|+|+|+||+||-+||++|-|||+
T Consensus 431 g~d~~ew-vv-~~dk~~yde~fy~l~-p~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~ 507 (532)
T KOG1954|consen 431 GADEAEW-VV-SKDKPTYDEIFYTLS-PVNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIK 507 (532)
T ss_pred CCcccce-ee-ecCCcchHhhhhccc-ccCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHh
Confidence 4678899 44 568899999999998 47999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCccccccc
Q 001269 472 RYREGRPLPAVLPRNVMFDETL 493 (1111)
Q Consensus 472 ~~~~G~~LP~~LPpsLip~s~~ 493 (1111)
.+++|+.||..||+.|+||+++
T Consensus 508 ~kleghelp~~lp~hl~pps~r 529 (532)
T KOG1954|consen 508 LKLEGHELPSELPKHLVPPSKR 529 (532)
T ss_pred eecccccCccccCcccCCcccc
Confidence 9999999999999999999764
No 11
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.21 E-value=4.6e-11 Score=111.18 Aligned_cols=84 Identities=27% Similarity=0.490 Sum_probs=79.7
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcCCCCCHHH
Q 001269 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPDI 83 (1111)
Q Consensus 4 ~~~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SGLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValAQ~G~~Lspd~ 83 (1111)
.+...|+++|..+|.|++|+|+..+++.+|...|++...+.+||.++|.+++|+|+++||+.+|++|+..+.|.+|++++
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~~~ 86 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPASL 86 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCccC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHhh
Q 001269 84 VKAA 87 (1111)
Q Consensus 84 L~~~ 87 (1111)
..++
T Consensus 87 ~~~~ 90 (96)
T smart00027 87 PPSL 90 (96)
T ss_pred CHhh
Confidence 7766
No 12
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=8.2e-12 Score=142.48 Aligned_cols=83 Identities=29% Similarity=0.445 Sum_probs=77.7
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcCCCCCHHH
Q 001269 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPDI 83 (1111)
Q Consensus 4 ~~~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SGLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValAQ~G~~Lspd~ 83 (1111)
.+++||..-|+.+.+|-.|.|+|..|+.||.+|.||-.+|..||+|+|.|+||-|+.+|||.|||||-..++|++|+. .
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgypLPe-~ 306 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYPLPE-S 306 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCCCCCC-C
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999964 4
Q ss_pred HHhh
Q 001269 84 VKAA 87 (1111)
Q Consensus 84 L~~~ 87 (1111)
|..+
T Consensus 307 LP~~ 310 (737)
T KOG1955|consen 307 LPHC 310 (737)
T ss_pred Cccc
Confidence 4444
No 13
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.01 E-value=1e-09 Score=93.54 Aligned_cols=67 Identities=45% Similarity=0.735 Sum_probs=64.7
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhc
Q 001269 9 FESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQS 75 (1111)
Q Consensus 9 Y~~iF~~lD~DgDGkISg~Ea~~ff~~SGLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValAQ~ 75 (1111)
|+++|..+|.|++|+|+..|++.+|...|++...+.+||..+|.+++|+|+++||+.+|++|.++|+
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 6889999999999999999999999999999999999999999999999999999999999999874
No 14
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=4.5e-10 Score=126.22 Aligned_cols=84 Identities=26% Similarity=0.428 Sum_probs=79.4
Q ss_pred CccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcCCCCCHH
Q 001269 3 GPNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPD 82 (1111)
Q Consensus 3 ~~~~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SGLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValAQ~G~~Lspd 82 (1111)
++++..|+++|..+-+ -+|+|+|..|+..+.+|.||+.+|.+||.|+|+|+||+|+-+||..|-|||.+...|.+|+.+
T Consensus 440 ~~dk~~yde~fy~l~p-~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~~kleghelp~~ 518 (532)
T KOG1954|consen 440 SKDKPTYDEIFYTLSP-VNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKLKLEGHELPSE 518 (532)
T ss_pred ecCCcchHhhhhcccc-cCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHheecccccCccc
Confidence 4678899999999988 689999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHhh
Q 001269 83 IVKAA 87 (1111)
Q Consensus 83 ~L~~~ 87 (1111)
+.+++
T Consensus 519 lp~hl 523 (532)
T KOG1954|consen 519 LPKHL 523 (532)
T ss_pred cCccc
Confidence 77776
No 15
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.96 E-value=2.4e-09 Score=91.29 Aligned_cols=67 Identities=40% Similarity=0.707 Sum_probs=64.1
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhc
Q 001269 409 YSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYRE 475 (1111)
Q Consensus 409 Ye~IF~slDkD~DG~ISG~Ear~~f~kSgLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~~~~ 475 (1111)
|+++|..+|++++|+|+.+|++.+|...|++.+.+.+||..+|.+++|.|+++||+.+|+++.++++
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 6889999999999999999999999999999999999999999999999999999999999998864
No 16
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.91 E-value=2.2e-08 Score=110.65 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=114.4
Q ss_pred hhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 583 TTAGKKVDEREKVILDSREK-----IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIAS 657 (1111)
Q Consensus 583 tdLtkeLAnLenQ~ed~~ek-----ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEs 657 (1111)
.+|...|.+++.+|+.+..+ +.+|+.|+++|.....+....+..+++++..+++.|++|+.+++....+.+.|+.
T Consensus 165 ~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 165 SDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence 35677899999999885543 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeee
Q 001269 658 KLTIEDAK----FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIE 729 (1111)
Q Consensus 658 QLavlEa~----LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk~k~~~~ie 729 (1111)
+|..+|.. +.+.+..+..|+.+|.+++ .+|..++.||+.+|+||+.|+.+|+
T Consensus 245 ~l~~le~~~~~~~~~~~~~i~~le~el~~l~--------------------~~~~~~~~ey~~Ll~~K~~Ld~EIa 300 (312)
T PF00038_consen 245 QLRELEQRLDEEREEYQAEIAELEEELAELR--------------------EEMARQLREYQELLDVKLALDAEIA 300 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhccchhHHHHH--------------------HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99888655 6667888999999999999 9999999999999999999999986
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.64 E-value=6.5e-08 Score=83.26 Aligned_cols=60 Identities=25% Similarity=0.383 Sum_probs=54.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhCCCC------HHHHHHHHHhhcCCCCCCcCHHHHHHHH
Q 001269 8 QFESFFRRADLDGDGRISGAEAVAFFQGSNLP------KQVLAQIWMHADHNHTSYLGRQEFYNAL 67 (1111)
Q Consensus 8 ~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SGLP------~~~LaqIW~LaD~d~DG~LdrdEF~vAM 67 (1111)
.++++|+.+|.|++|+|+..|++.++...+.. ...+..||..+|.|+||.|+++||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47899999999999999999999999998743 3566777999999999999999999986
No 18
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.61 E-value=8.4e-08 Score=82.59 Aligned_cols=60 Identities=27% Similarity=0.425 Sum_probs=53.4
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHhcCC------CHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q 001269 408 KYSKVFMEVDTDRDGRITGEQARNLFMSWRL------PREVLKQVWDLSDQDSDSMLSLREFCFAL 467 (1111)
Q Consensus 408 ~Ye~IF~slDkD~DG~ISG~Ear~~f~kSgL------P~edL~qIW~LaDiDnDG~LdkdEF~IAM 467 (1111)
+++.+|..+|+|++|+|+.+|++.++...+. ..+.+..||..+|.|+||.|+++||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5889999999999999999999999998753 33566667999999999999999999887
No 19
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.44 E-value=6.4e-07 Score=83.95 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhCC-CCCCcccHHHHHHHHHh-CC--CCH-HHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001269 6 QDQFESFFRRADL-DGDGRISGAEAVAFFQG-SN--LPK-QVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (1111)
Q Consensus 6 ~~~Y~~iF~~lD~-DgDGkISg~Ea~~ff~~-SG--LP~-~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValAQ~G 76 (1111)
...++.+|..+|. +++|+|+.+|++.+|+. -| |.. .++.+|+..+|.|+||.|+++||+..|.-++.+.++
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~~ 82 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVKG 82 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4578999999999 99999999999999998 54 777 999999999999999999999999999999998776
No 20
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.32 E-value=2.5e-06 Score=79.60 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh-----CC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001269 6 QDQFESFFRRAD-LDGDG-RISGAEAVAFFQG-----SN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (1111)
Q Consensus 6 ~~~Y~~iF~~lD-~DgDG-kISg~Ea~~ff~~-----SG--LP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValAQ~G 76 (1111)
...++++|+.+| .|+|| +|+..|++.+|+. .| .++.++..+++.+|.|++|.|+++||+..|.-++.+.++
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~~~~ 86 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTACHE 86 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHhh
Confidence 457899999998 79999 6999999999998 55 678889999999999999999999999999999888764
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.31 E-value=2.1e-06 Score=80.53 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhCC-CCCCccCHHHHHHHHHh-cC--CCH-HHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH
Q 001269 406 IQKYSKVFMEVDT-DRDGRITGEQARNLFMS-WR--LPR-EVLKQVWDLSDQDSDSMLSLREFCFALYLMERY 473 (1111)
Q Consensus 406 k~~Ye~IF~slDk-D~DG~ISG~Ear~~f~k-Sg--LP~-edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~~ 473 (1111)
...+..+|..+|+ +++|+|+..|++.+|.+ .| |.. +++..|..-+|.|+||+|+++||+.+|.-+-.+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~ 79 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKA 79 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 4568999999999 99999999999999997 64 777 999999999999999999999998888755444
No 22
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.30 E-value=1.9e-06 Score=79.80 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=64.6
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh-C------CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001269 6 QDQFESFFRRAD-LDGDG-RISGAEAVAFFQG-S------NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (1111)
Q Consensus 6 ~~~Y~~iF~~lD-~DgDG-kISg~Ea~~ff~~-S------GLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValAQ~G 76 (1111)
...++++|..+| .|++| +|+..|++.+|+. . ..+...+.+|+..+|.+++|.|+++||+..|..++.|.++
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~~ 87 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNN 87 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 457899999997 99999 5999999999975 3 2478999999999999999999999999999999999876
Q ss_pred C
Q 001269 77 R 77 (1111)
Q Consensus 77 ~ 77 (1111)
.
T Consensus 88 ~ 88 (92)
T cd05025 88 F 88 (92)
T ss_pred H
Confidence 3
No 23
>PTZ00183 centrin; Provisional
Probab=98.17 E-value=8.2e-06 Score=79.97 Aligned_cols=71 Identities=20% Similarity=0.232 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 001269 400 KMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWR--LPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1111)
Q Consensus 400 ~ISpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSg--LP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI 470 (1111)
.+++.+..++..+|..+|.+++|+|+..+++.+|...| +....+..+|..+|.+++|.|+++||+.+++.+
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 67889999999999999999999999999999998754 788999999999999999999999999988754
No 24
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.16 E-value=8.2e-06 Score=76.47 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh------C-CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001269 6 QDQFESFFRRAD-LDGDG-RISGAEAVAFFQG------S-NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (1111)
Q Consensus 6 ~~~Y~~iF~~lD-~DgDG-kISg~Ea~~ff~~------S-GLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValAQ~G 76 (1111)
...+.++|..+| .|+|| +|+..|++.+|.. . ......+.+|.+.+|.|+||.|+++||+..|.-++.|.+.
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~~~~ 88 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVACND 88 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456788999999 78998 5999999999976 2 3477899999999999999999999999999988887653
No 25
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.16 E-value=8.5e-06 Score=75.93 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhCC-CC-CCcccHHHHHHHHHh-------CCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhc
Q 001269 6 QDQFESFFRRADL-DG-DGRISGAEAVAFFQG-------SNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQS 75 (1111)
Q Consensus 6 ~~~Y~~iF~~lD~-Dg-DGkISg~Ea~~ff~~-------SGLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValAQ~ 75 (1111)
...+..+|..+|. |+ +|+|+..|++.+|.. ..++...+..|++.+|.+++|.|+++||+.+|.-++++-.
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~~~ 85 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIACE 85 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 4568899999997 97 699999999999975 2568899999999999999999999999999998888754
No 26
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.12 E-value=1.2e-05 Score=74.99 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhC-CCCCC-ccCHHHHHHHHHh-----cC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q 001269 406 IQKYSKVFMEVD-TDRDG-RITGEQARNLFMS-----WR--LPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1111)
Q Consensus 406 k~~Ye~IF~slD-kD~DG-~ISG~Ear~~f~k-----Sg--LP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~ 472 (1111)
...+..+|..+| +|++| +|+.++++.+|.. .| ...+++..++..+|.|+||+|+++||+..|.-+-.
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 457899999998 79999 5999999999998 54 67888999999999999999999999877765443
No 27
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.11 E-value=1.6e-05 Score=72.70 Aligned_cols=68 Identities=15% Similarity=0.262 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhCC--CCCCccCHHHHHHHHHh-cC--C----CHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 001269 403 PSDIQKYSKVFMEVDT--DRDGRITGEQARNLFMS-WR--L----PREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1111)
Q Consensus 403 peDk~~Ye~IF~slDk--D~DG~ISG~Ear~~f~k-Sg--L----P~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI 470 (1111)
+++...+..+|..+|+ +++|+|+.++++.+|.. .+ + ....+..||...|.+++|.|+++||+..|.-+
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4677889999999999 89999999999999975 33 3 38999999999999999999999998876644
No 28
>PTZ00184 calmodulin; Provisional
Probab=98.10 E-value=1.4e-05 Score=77.12 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 001269 400 KMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWR--LPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1111)
Q Consensus 400 ~ISpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSg--LP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI 470 (1111)
.++.+++.++..+|..+|.+++|+|+..+++.++...+ +..+.+..||.++|.+++|.|+++||+.+|+.+
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 46788999999999999999999999999999988654 678899999999999999999999999888764
No 29
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.09 E-value=8e-06 Score=81.96 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Q 001269 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKL 69 (1111)
Q Consensus 6 ~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SG--LP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~L 69 (1111)
...++++|+.+|.|+||+|+.+|++.+|...| +....+..+++.+|.|+||+++++||+..|..
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 45899999999999999999999999999986 77889999999999999999999999998863
No 30
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.08 E-value=1.5e-05 Score=74.57 Aligned_cols=71 Identities=27% Similarity=0.370 Sum_probs=63.2
Q ss_pred HHHHHHHHHh-hCCCCCC-cccHHHHHHHHHhC-------CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001269 6 QDQFESFFRR-ADLDGDG-RISGAEAVAFFQGS-------NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (1111)
Q Consensus 6 ~~~Y~~iF~~-lD~DgDG-kISg~Ea~~ff~~S-------GLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValAQ~G 76 (1111)
......+|.. +|.|++| .|+..|++.+|..- ...+.++.+||..+|.|+||.|+++||+..|.-++.+.+.
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~~~~ 87 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVACHE 87 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHHHh
Confidence 4567889999 8898987 99999999999885 5778999999999999999999999999999988887553
No 31
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.06 E-value=1.8e-05 Score=73.76 Aligned_cols=68 Identities=12% Similarity=0.171 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhCC-CC-CCccCHHHHHHHHHh-c------CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH
Q 001269 406 IQKYSKVFMEVDT-DR-DGRITGEQARNLFMS-W------RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERY 473 (1111)
Q Consensus 406 k~~Ye~IF~slDk-D~-DG~ISG~Ear~~f~k-S------gLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~~ 473 (1111)
...+..+|..+|. |+ +|+|+.+|++.+|.. . +++.+++..|+..+|.+++|.|+++||+.+|.-+...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4678999999997 87 699999999999875 2 5688999999999999999999999999777655443
No 32
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.06 E-value=1.3e-05 Score=74.26 Aligned_cols=67 Identities=12% Similarity=0.272 Sum_probs=58.3
Q ss_pred HHHHHHHHhhC-CCCCCc-cCHHHHHHHHHh-c------CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH
Q 001269 407 QKYSKVFMEVD-TDRDGR-ITGEQARNLFMS-W------RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERY 473 (1111)
Q Consensus 407 ~~Ye~IF~slD-kD~DG~-ISG~Ear~~f~k-S------gLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~~ 473 (1111)
..+.++|..+| ++++|+ |+..+++.+|.. . .++.+++.+|+..+|.+++|.|+++||+.+|..+-.+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~ 84 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVA 84 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHH
Confidence 56899999997 999995 999999999975 3 2478999999999999999999999999888755443
No 33
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.06 E-value=1.4e-05 Score=74.66 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=59.7
Q ss_pred HHHHHHHHhhCC-CC-CCcccHHHHHHHHHh-----CCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHH
Q 001269 7 DQFESFFRRADL-DG-DGRISGAEAVAFFQG-----SNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVA 73 (1111)
Q Consensus 7 ~~Y~~iF~~lD~-Dg-DGkISg~Ea~~ff~~-----SGLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValA 73 (1111)
...-++|.++|. |+ +|+|+.+|++.+|.+ -.++.+++.+|++.+|.|++|.|+++||+..|.-++.|
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 356789999998 67 899999999999963 34899999999999999999999999999998888776
No 34
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.03 E-value=1.3e-05 Score=82.79 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=60.6
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHH
Q 001269 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALK 68 (1111)
Q Consensus 4 ~~~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SG--LP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~ 68 (1111)
..++.++..|+.+|.|+||+|+..|++.+++.-| ++++++.++...+|.|+||+|++++|+.++.
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 3478899999999999999999999999999875 9999999999999999999999999998764
No 35
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.02 E-value=3e-05 Score=72.46 Aligned_cols=66 Identities=11% Similarity=0.223 Sum_probs=56.6
Q ss_pred HHHHHHHHhhCC-CC-CCccCHHHHHHHHHh---c--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q 001269 407 QKYSKVFMEVDT-DR-DGRITGEQARNLFMS---W--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1111)
Q Consensus 407 ~~Ye~IF~slDk-D~-DG~ISG~Ear~~f~k---S--gLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~ 472 (1111)
...-.+|.++|. ++ +|+|+.+|++.+|.+ . .++.+++.+|++-+|.|++|+|+++||+..|.-+.+
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 347789999997 77 899999999999963 2 589999999999999999999999999877764443
No 36
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.98 E-value=3e-05 Score=70.89 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=59.4
Q ss_pred cHHHHHHHHHhhCC--CCCCcccHHHHHHHHHh-CC--C----CHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHH
Q 001269 5 NQDQFESFFRRADL--DGDGRISGAEAVAFFQG-SN--L----PKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTV 72 (1111)
Q Consensus 5 ~~~~Y~~iF~~lD~--DgDGkISg~Ea~~ff~~-SG--L----P~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LVal 72 (1111)
+...++.+|..+|. |++|+|+..|++.+|+. .| + ....+.+||..+|.+++|.|+++||+..|.-++.
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 45678999999999 89999999999999975 33 3 4899999999999999999999999998876644
No 37
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.97 E-value=2.8e-05 Score=78.03 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcC--CCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhc
Q 001269 401 MKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWR--LPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYRE 475 (1111)
Q Consensus 401 ISpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSg--LP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~~~~ 475 (1111)
++.++...|.++|..+|++++|+|+..++..+|...| .....|..|.+-+|.+++|.|+++||+..|........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~ 78 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKT 78 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccc
Confidence 5778899999999999999999999999999999875 56999999999999999999999999998886655443
No 38
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.95 E-value=4e-05 Score=71.87 Aligned_cols=65 Identities=11% Similarity=0.286 Sum_probs=56.0
Q ss_pred HHHHHHHHhhC-CCCCC-ccCHHHHHHHHHh-c------CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHH
Q 001269 407 QKYSKVFMEVD-TDRDG-RITGEQARNLFMS-W------RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLME 471 (1111)
Q Consensus 407 ~~Ye~IF~slD-kD~DG-~ISG~Ear~~f~k-S------gLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~ 471 (1111)
..+..+|..+| +|++| +|+..|++.+|.+ . .....++.+|...+|.|+||.|+++||+.+|.-+-
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 55888999999 78998 5999999999965 2 35778999999999999999999999998876443
No 39
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=97.93 E-value=2.2e-05 Score=81.13 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q 001269 404 SDIQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALY 468 (1111)
Q Consensus 404 eDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kS--gLP~edL~qIW~LaDiDnDG~LdkdEF~IAMh 468 (1111)
..+.++...|..+|+|+||+|+..+++.++... .++.++++.+.+++|.|+||+|++++|+-+|.
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 346789999999999999999999999999976 69999999999999999999999999998663
No 40
>PTZ00183 centrin; Provisional
Probab=97.93 E-value=2.6e-05 Score=76.51 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=60.2
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHH
Q 001269 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKLV 70 (1111)
Q Consensus 5 ~~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SG--LP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LV 70 (1111)
+...+..+|..+|.|++|+|+..|+..+|...| +....+..||..+|.+++|.|+++||+.++..+
T Consensus 15 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 456789999999999999999999999999866 688999999999999999999999999987654
No 41
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.93 E-value=3.2e-05 Score=62.53 Aligned_cols=59 Identities=24% Similarity=0.394 Sum_probs=54.1
Q ss_pred HHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q 001269 409 YSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFAL 467 (1111)
Q Consensus 409 Ye~IF~slDkD~DG~ISG~Ear~~f~kS--gLP~edL~qIW~LaDiDnDG~LdkdEF~IAM 467 (1111)
...+|..+|.+++|.|+..+++.++... ..+.+.+..+|..+|.+++|.|+++||+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999976 6889999999999999999999999998754
No 42
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.90 E-value=5.7e-05 Score=70.79 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=57.7
Q ss_pred HHHHHHHHHh-hCCCCCC-ccCHHHHHHHHHhc-------CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q 001269 406 IQKYSKVFME-VDTDRDG-RITGEQARNLFMSW-------RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1111)
Q Consensus 406 k~~Ye~IF~s-lDkD~DG-~ISG~Ear~~f~kS-------gLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~ 472 (1111)
......+|.. .|++++| +|+.+|++.+|.+- ++....+.+||..+|.|+||.|+++||+..|.-+..
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 4568899999 7788876 99999999999863 577899999999999999999999999987765543
No 43
>PRK09039 hypothetical protein; Validated
Probab=97.89 E-value=0.00039 Score=79.52 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=27.7
Q ss_pred HHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 616 YKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 616 yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1111)
.....+++|.+.+...++..++|..|+.+|+.-.+|+..|+..|..+|...++++.++.+|+++|+
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444444444444444444433333
No 44
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.88 E-value=4.2e-05 Score=75.17 Aligned_cols=64 Identities=20% Similarity=0.408 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q 001269 402 KPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFAL 467 (1111)
Q Consensus 402 SpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSgLP~edL~qIW~LaDiDnDG~LdkdEF~IAM 467 (1111)
.+..+....-+|..+|+|+||+|+..||..++ ......-+.++...+|.|+||.|+++||+.++
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 46778889999999999999999999999887 45567888999999999999999999999887
No 45
>PRK09039 hypothetical protein; Validated
Probab=97.88 E-value=0.00034 Score=79.99 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=67.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhhhH-------HHHHHHHHhHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSRE--------------KIEFYRSKMQELVLYKSRCDNRLN-------EITERALADRREAE 639 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~e--------------kea~lrsQmQEL~~yKsra~qeL~-------e~~eq~selkreLq 639 (1111)
+++.++++|+.|+.||.++.+ ++..++.++..++..+.+.+..+. +...+...+..+|.
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~ 126 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELD 126 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHH
Confidence 555566666666666666553 245555555555555555544333 33444555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 001269 640 TLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEEL 707 (1111)
Q Consensus 640 sLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL 707 (1111)
.++.+|.+...+|..|++||+.++..|..++.+|..++++... .+++|..+..+|+.+
T Consensus 127 ~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~----------~~~~i~~L~~~L~~a 184 (343)
T PRK09039 127 SEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRE----------SQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 7777777777777777777766666665555555555555544 445555554444444
No 46
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.88 E-value=0.00066 Score=76.98 Aligned_cols=132 Identities=19% Similarity=0.238 Sum_probs=76.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh----HHHHHHHHHHHHHHH-------HHHH
Q 001269 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALAD----RREAETLGKKYEEKY-------KQVA 653 (1111)
Q Consensus 585 LtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~sel----kreLqsLR~eyEee~-------KqV~ 653 (1111)
|...+..|++.++.+...++.+...+.+|..++.....++..+++...++ ..+|+.||.++.+.. +.++
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666655555566666666666666666666666655433322 334444444444444 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHH-HHHHHHHHHHHHHHHHHHHhccccc
Q 001269 654 EIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRAD-RIQSDLEELLKALTERCKKHGIDVK 723 (1111)
Q Consensus 654 ~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~-~in~el~eL~kqL~E~~~~lgvk~k 723 (1111)
+++.++..++..+..+.+++.+|+++|++++ ...++.+ -...|+..|+..+.-.|+++|+++.
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI~e~~-------~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~~~ 297 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEIAEAE-------KIREECRGWTRSEVKRLKAKVDALEKLTGWKIV 297 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcCCCHHHHHHHHHHHHHHHHHHCcEEE
Confidence 5555555555555555555555555555544 1111111 2567899999999999999999874
No 47
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.88 E-value=2.6e-05 Score=82.69 Aligned_cols=75 Identities=25% Similarity=0.357 Sum_probs=67.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHH--HHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 001269 394 SQVPWPKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREV--LKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1111)
Q Consensus 394 ~~~dWp~ISpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSgLP~ed--L~qIW~LaDiDnDG~LdkdEF~IAMhLI 470 (1111)
....| .+..+.+.|..+|.++|.+.||||+..||+.+|.+.|.|+.- |+.++.-+|-|.||+|++.||++..+..
T Consensus 88 teF~e--FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 88 TEFSE--FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred hhhhH--HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 45567 788999999999999999999999999999999999999875 5789999999999999999999866654
No 48
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.84 E-value=4.9e-05 Score=74.68 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHH
Q 001269 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNAL 67 (1111)
Q Consensus 6 ~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SGLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM 67 (1111)
+....-.|..+|.|+||+|+..|+..++ .+....-+.++++.+|.|+||+|+++||+.++
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3456778999999999999999999987 45567888999999999999999999999988
No 49
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.80 E-value=0.00053 Score=84.83 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=50.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 001269 583 TTAGKKVDEREKVILDSREKIE--------------FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEK 648 (1111)
Q Consensus 583 tdLtkeLAnLenQ~ed~~ekea--------------~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee 648 (1111)
..|+.+|..|+.++...++.++ .++..+++|...-...+.+|.++...+.+.+..++.|+++|.++
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444433 34444666666666666677777777777777777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 001269 649 YKQVAEIASKLTIE 662 (1111)
Q Consensus 649 ~KqV~~LEsQLavl 662 (1111)
.++...||+||..+
T Consensus 501 ~~~R~~lEkQL~eE 514 (697)
T PF09726_consen 501 RRQRASLEKQLQEE 514 (697)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777544
No 50
>PTZ00184 calmodulin; Provisional
Probab=97.80 E-value=6.5e-05 Score=72.47 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=59.7
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHH
Q 001269 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKLV 70 (1111)
Q Consensus 5 ~~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SG--LP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LV 70 (1111)
+...++.+|..+|.|++|.|+..|+..++...| +....+..||.++|.+++|.|+++||+.+|..+
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 466889999999999999999999999998765 667899999999999999999999999988754
No 51
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.78 E-value=8.9e-05 Score=59.92 Aligned_cols=59 Identities=25% Similarity=0.396 Sum_probs=54.1
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHH
Q 001269 9 FESFFRRADLDGDGRISGAEAVAFFQGS--NLPKQVLAQIWMHADHNHTSYLGRQEFYNAL 67 (1111)
Q Consensus 9 Y~~iF~~lD~DgDGkISg~Ea~~ff~~S--GLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM 67 (1111)
.+.+|..+|.|++|.|+..++..++... ..+...+..||..+|.+++|.|+.+||+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999986 4888999999999999999999999998754
No 52
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.77 E-value=7e-05 Score=89.37 Aligned_cols=131 Identities=18% Similarity=0.138 Sum_probs=81.2
Q ss_pred hhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 584 TAGKKVDEREKVILDSREK-----IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASK 658 (1111)
Q Consensus 584 dLtkeLAnLenQ~ed~~ek-----ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQ 658 (1111)
+|..-|.+++.||+.+..+ +.||+.|++++.....+.-...+..++++..++..|..|| .++.+||
T Consensus 246 eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr-------~klselE-- 316 (546)
T KOG0977|consen 246 ELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLR-------AKLSELE-- 316 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchh-------hhhcccc--
Confidence 4566678888888874442 8889999999887666665455555555555555555555 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeeec
Q 001269 659 LTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIEL 730 (1111)
Q Consensus 659 LavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk~k~~~~iel 730 (1111)
..-..+..++..|+-+|...+ ..-...|-++-..|..+-++++.++.||++|+++|..|+.||+.
T Consensus 317 -----~~n~~L~~~I~dL~~ql~e~~--r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~ 381 (546)
T KOG0977|consen 317 -----SRNSALEKRIEDLEYQLDEDQ--RSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAA 381 (546)
T ss_pred -----ccChhHHHHHHHHHhhhhhhh--hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHH
Confidence 333333333333333333222 12233444455555555599999999999999999999999963
No 53
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.72 E-value=6.8e-05 Score=62.61 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=45.0
Q ss_pred CCCcccHHHHHHHHHhC--C-CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHH
Q 001269 20 GDGRISGAEAVAFFQGS--N-LPKQVLAQIWMHADHNHTSYLGRQEFYNALK 68 (1111)
Q Consensus 20 gDGkISg~Ea~~ff~~S--G-LP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~ 68 (1111)
.+|+|+.++++.+|... + ++.+++..|+..+|.+++|+|+++||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999765 4 8899999999999999999999999999986
No 54
>PRK11637 AmiB activator; Provisional
Probab=97.70 E-value=0.0014 Score=76.56 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEK 648 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee 648 (1111)
++.+..+++.+...-...+++|+.+..++.+++.+|..++.++++.
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444444444444444333333
No 55
>PRK11637 AmiB activator; Provisional
Probab=97.66 E-value=0.0023 Score=74.85 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.5
Q ss_pred Cccccc
Q 001269 876 TDSVWG 881 (1111)
Q Consensus 876 ~ds~w~ 881 (1111)
.-+||+
T Consensus 371 ~~t~Y~ 376 (428)
T PRK11637 371 DMSLYG 376 (428)
T ss_pred cEEEcc
Confidence 344444
No 56
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.65 E-value=0.0015 Score=83.33 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 623 RLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 623 eL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1111)
++.++..++..++.++..|+.++++..++++.++.++..++..+..++.++.++..++.
T Consensus 841 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~ 899 (1164)
T TIGR02169 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333
No 57
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.65 E-value=9.1e-05 Score=61.85 Aligned_cols=49 Identities=29% Similarity=0.477 Sum_probs=44.9
Q ss_pred CCCccCHHHHHHHHHhc--C-CCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q 001269 420 RDGRITGEQARNLFMSW--R-LPREVLKQVWDLSDQDSDSMLSLREFCFALY 468 (1111)
Q Consensus 420 ~DG~ISG~Ear~~f~kS--g-LP~edL~qIW~LaDiDnDG~LdkdEF~IAMh 468 (1111)
.+|+|+.++++.+|... + ++.+++..|+..+|++++|+|+++||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999765 5 8899999999999999999999999999875
No 58
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.64 E-value=0.0017 Score=73.65 Aligned_cols=84 Identities=20% Similarity=0.246 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 001269 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTER 714 (1111)
Q Consensus 635 kreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~ 714 (1111)
+.+|..+..+++...+++.+++.+|..++..+++...++.+++.+|++++ ..+.+.=.=...|+..|+.+++-.
T Consensus 210 k~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae------~~~~~~r~~t~~Ei~~Lk~~~~~L 283 (312)
T smart00787 210 KEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE------KKLEQCRGFTFKEIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhcCCCCHHHHHHHHHHHHHH
Confidence 34444455555555577777777777777777777788888888887777 122222233467899999999999
Q ss_pred HHHhcccccc
Q 001269 715 CKKHGIDVKS 724 (1111)
Q Consensus 715 ~~~lgvk~k~ 724 (1111)
++++|+++.-
T Consensus 284 e~l~g~~~~~ 293 (312)
T smart00787 284 QSLTGWKITK 293 (312)
T ss_pred HHHhCCeeEe
Confidence 9999998653
No 59
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.64 E-value=0.0017 Score=83.01 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=3.8
Q ss_pred CCCHHHHH
Q 001269 400 KMKPSDIQ 407 (1111)
Q Consensus 400 ~ISpeDk~ 407 (1111)
.++|.++.
T Consensus 149 ~~~~~~r~ 156 (1164)
T TIGR02169 149 SMSPVERR 156 (1164)
T ss_pred CCCHHHHH
Confidence 34555543
No 60
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.59 E-value=0.0022 Score=81.63 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=13.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHH
Q 001269 688 SADGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 688 ~~n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
.+-..+++++..++..+..|+.++.+
T Consensus 810 ~~~~~~~~~l~~~~~~~~~l~~~~~~ 835 (1179)
T TIGR02168 810 AELTLLNEEAANLRERLESLERRIAA 835 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555544
No 61
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.57 E-value=0.0024 Score=81.28 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 001269 665 KFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 665 ~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
.+..++.++.+++.++..++ .....++.++..+..++.+|+.++.+
T Consensus 797 ~~~~~~~~l~~~~~~~~~~~---~~l~~~~~~~~~l~~~~~~l~~~~~~ 842 (1179)
T TIGR02168 797 ELKALREALDELRAELTLLN---EEAANLRERLESLERRIAATERRLED 842 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555444 44555556666666666666655544
No 62
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.56 E-value=0.00016 Score=76.94 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHH--HHHHHHhhcCCCCCCcCHHHHHHHHHHHH
Q 001269 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQV--LAQIWMHADHNHTSYLGRQEFYNALKLVT 71 (1111)
Q Consensus 4 ~~~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SGLP~~~--LaqIW~LaD~d~DG~LdrdEF~vAM~LVa 71 (1111)
++...|..+|.++|.|.||+|+..|++.+|.+-|.|+.- |.+++..+|-|.||+|++.||+...++++
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 356789999999999999999999999999999999865 56899999999999999999999888765
No 63
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=97.40 E-value=0.011 Score=64.63 Aligned_cols=132 Identities=15% Similarity=0.164 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 588 KVDEREKVILDSREKIEFYRSKMQELVLYKSR-CDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKF 666 (1111)
Q Consensus 588 eLAnLenQ~ed~~ekea~lrsQmQEL~~yKsr-a~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~L 666 (1111)
.|.+++.++.+..+..+.++.+.++++..... ........+.++.+.+..+..|+.++++..+.++.....|..+...|
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666555556666666666551110 00112222233333344444444444444444444444444443333
Q ss_pred HHHHHHH-------HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHH-HHHHHHhcccc
Q 001269 667 RELQERK-------MELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL-TERCKKHGIDV 722 (1111)
Q Consensus 667 qdiQ~EL-------~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL-~E~~~~lgvk~ 722 (1111)
+..+..| ..+...+.+++ .+-..+++++..+..++..-..+| +|.+..|.|+-
T Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~ 161 (302)
T PF10186_consen 101 EQRRSRLSASQDLVESRQEQLEELQ---NELEERKQRLSQLQSQLARRRRQLIQELSEIFPIEQ 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcee
Confidence 3333333 33333333333 333345555555666666555555 56777888854
No 64
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.38 E-value=0.02 Score=57.33 Aligned_cols=126 Identities=12% Similarity=0.176 Sum_probs=74.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLa 660 (1111)
+...|..++..+..++++...++..++..++........|++.+..--...++.-..|..||.++++...++..|+..+.
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666777777777777777776665554455556677777777666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q 001269 661 IEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALT 712 (1111)
Q Consensus 661 vlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~ 712 (1111)
.+...|...+....+-+..|. .+...++.|++.++.+-.-|..||.
T Consensus 84 ~a~~~l~~~e~sw~~qk~~le------~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 84 SAKAELEESEASWEEQKEQLE------KELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 655555444443333222222 1223445666666666666665554
No 65
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.38 E-value=0.00072 Score=62.93 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhCCC--CCCcccHHHHHHHHHhC---CCC----HHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHH
Q 001269 6 QDQFESFFRRADLD--GDGRISGAEAVAFFQGS---NLP----KQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVA 73 (1111)
Q Consensus 6 ~~~Y~~iF~~lD~D--gDGkISg~Ea~~ff~~S---GLP----~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValA 73 (1111)
......+|..++.. .+|+|+.+|++.+|.+. .++ ...+.+||..+|.+++|.|+++||+..|..++.+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 34567788888865 47899999999999743 244 8999999999999999999999999999888765
No 66
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.36 E-value=0.006 Score=77.34 Aligned_cols=134 Identities=15% Similarity=0.167 Sum_probs=78.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHH--HHHH-HHHHHHHHHHHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRRE--AETL-GKKYEEKYKQVAEIAS 657 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkre--LqsL-R~eyEee~KqV~~LEs 657 (1111)
|+.++++++.+|++++......++-++.+|.+|.......+.+++...-++.+++.. ...+ -.+|++....+...+.
T Consensus 669 e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~ 748 (1074)
T KOG0250|consen 669 EASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEK 748 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHH
Confidence 444455555555555544444555555555555555555554444444444444332 1100 0134555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 658 KLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1111)
Q Consensus 658 QLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~ 717 (1111)
+|+..|+.+.++++++..++.+.++++ ..-+..++++...+..+++|+..|.++...
T Consensus 749 eIe~~~~~~e~l~~e~e~~~~e~~e~~---~~~~~~~~~l~~e~~~l~~l~~el~~r~dk 805 (1074)
T KOG0250|consen 749 EIEEKEAPLEKLKEELEHIELEAQELE---EYYAAGREKLQGEISKLDALKEELKLREDK 805 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666777777777777777777777 666677777777777777777777765544
No 67
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.36 E-value=0.00081 Score=62.58 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhCCC--CCCccCHHHHHHHHHh-c--CCC----HHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 001269 406 IQKYSKVFMEVDTD--RDGRITGEQARNLFMS-W--RLP----REVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1111)
Q Consensus 406 k~~Ye~IF~slDkD--~DG~ISG~Ear~~f~k-S--gLP----~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI 470 (1111)
......+|.+++.. .+|+|+.+|++.+|.+ . .++ .+++..||..+|.+++|.|+++||+.+|.-+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35577899999854 4799999999999974 3 255 8999999999999999999999999887754
No 68
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.35 E-value=0.0086 Score=68.35 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 645 YEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (1111)
Q Consensus 645 yEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~ 716 (1111)
|+....++..++.++..+++.+..++.++.+++.++..++. .....+++++..++.++.+++.+|.+...
T Consensus 198 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 198 LLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQ--TFREEVLEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444455555555555555555555555554431 22334556677777777777777766443
No 69
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.34 E-value=0.00059 Score=72.30 Aligned_cols=66 Identities=24% Similarity=0.366 Sum_probs=55.5
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHh---CCCC--H----HHHHHHHHhhcCCCCCCcCHHHHHHHHHHH
Q 001269 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQG---SNLP--K----QVLAQIWMHADHNHTSYLGRQEFYNALKLV 70 (1111)
Q Consensus 5 ~~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~---SGLP--~----~~LaqIW~LaD~d~DG~LdrdEF~vAM~LV 70 (1111)
.....+=.|+.+|.|++|+|+.+|+..++.. .+.. . .++.+++..+|.|+||+|+++||+.++.-.
T Consensus 102 ~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 102 KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 3456777999999999999999999988877 3555 3 556677889999999999999999998755
No 70
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.28 E-value=0.0057 Score=67.20 Aligned_cols=96 Identities=16% Similarity=0.248 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALA---------DRREAETLGKKYEEKYKQVAEIASKL 659 (1111)
Q Consensus 589 LAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~se---------lkreLqsLR~eyEee~KqV~~LEsQL 659 (1111)
|..++++++.++.....++..+++|.+++.+.+.+|.++.+++.. ..+++..|..+++.-.++..+|+.+|
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el 112 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDEL 112 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444433332 24445556655555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 660 TIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 660 avlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
+.+...+..++.++..|+.++.+++
T Consensus 113 ~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 113 AELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555555555555555555555
No 71
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.27 E-value=0.0041 Score=77.64 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=90.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLa 660 (1111)
+..+|...|++++++|+++.+++..+..+||++++....+..+...++.++..++.+...|...++-..+++..|...|.
T Consensus 679 ~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~ 758 (1200)
T KOG0964|consen 679 ELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLH 758 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45577888888899999999999999999999999998887777777666666666666666555555555555555544
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHH----HHHHHhccccccceee
Q 001269 661 IEDAKFRELQERKM-ELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALT----ERCKKHGIDVKSHAVI 728 (1111)
Q Consensus 661 vlEa~LqdiQ~EL~-ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~----E~~~~lgvk~k~~~~i 728 (1111)
.++...+..+++|. +|-.+ ....-+||+..+|-+|.+|..+|+ |+..+...|..++.++
T Consensus 759 ~~~~~~~~~e~el~sel~sq---------Lt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l 822 (1200)
T KOG0964|consen 759 KLESQSNYFESELGSELFSQ---------LTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANL 822 (1200)
T ss_pred HHHHHHHhHHHHHhHHHHhh---------cCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333321 11122 223335677777777777777764 5566666666665544
No 72
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.25 E-value=0.0049 Score=80.42 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 604 a~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1111)
..++.++.++........++|..++.++..++..+..++.+++...+++..|+.++..++..+.+++.++..|++++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (1163)
T COG1196 379 EALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLE 456 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444443333333333333333333333
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.25 E-value=0.0071 Score=68.76 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q 001269 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALT 712 (1111)
Q Consensus 651 qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~ 712 (1111)
++..+.+.|..++..+..++.+|.+|+.++++++ .+-..+.+++.+++.+|.++++.+.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~---~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELE---EKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666667777777777777777777777 5566677777777777777776664
No 74
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.23 E-value=0.025 Score=57.82 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHH
Q 001269 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLG 642 (1111)
Q Consensus 604 a~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR 642 (1111)
..+..++.+|.....+.++++..+..++..++.+|..|.
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~ 55 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLE 55 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333333333333333333333333
No 75
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.23 E-value=0.0074 Score=75.01 Aligned_cols=101 Identities=10% Similarity=0.183 Sum_probs=58.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHH---------HHHHHHH-H
Q 001269 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGK---------KYEEKYK-Q 651 (1111)
Q Consensus 582 atdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~---------eyEee~K-q 651 (1111)
-+.|..+|++|.+....-++.+..++.++.+.+..|..++.+|.+-+....+.+ ...-|. +|.+.++ .
T Consensus 469 ne~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee--~~aar~~~~~~~~r~e~~e~~r~r 546 (697)
T PF09726_consen 469 NEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEE--EKAARALAQAQATRQECAESCRQR 546 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HhhhhccccchhccchhHHHHHHH
Confidence 334444444444444444444788888888888888888888887653322111 112222 4444333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 652 VAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 652 V~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
..+||..|..++..|+.+++++..|+.++++++
T Consensus 547 ~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 547 RRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666665544
No 76
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.22 E-value=0.0086 Score=76.02 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHH
Q 001269 600 REKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKY 645 (1111)
Q Consensus 600 ~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~ey 645 (1111)
++...-++..+.++......++++.+..+..+-.+++.|..++++.
T Consensus 343 r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 343 RKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555655666666655555555555555555544443
No 77
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.20 E-value=0.0094 Score=71.81 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHhccccccc
Q 001269 692 LLQVRADRIQSDLEELLKALTE-RCKKHGIDVKSH 725 (1111)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E-~~~~lgvk~k~~ 725 (1111)
.++.+++.+..+|..++.+|+. +++...++--+.
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~ 314 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELS 314 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443 444444444443
No 78
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.20 E-value=0.016 Score=62.07 Aligned_cols=135 Identities=18% Similarity=0.256 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 001269 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAE----------TLGKKYEEKYKQVAEIASK 658 (1111)
Q Consensus 589 LAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLq----------sLR~eyEee~KqV~~LEsQ 658 (1111)
|..|..||++.+.++...+..|.++.....+.-.-|.....++.++++.+. .++..+....+++..|+-.
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e 108 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666655666666666666555554444444444444443333 3444444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHh-hcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 001269 659 LTIEDAKFRELQERKMELHQAIV----NME-RGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVK 723 (1111)
Q Consensus 659 LavlEa~LqdiQ~EL~ELeqeLq----klk-~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk~k 723 (1111)
-.+++..+..++.+..+|+.... .++ +++-.|-.|+.++..+...++.-..||.|.-...++...
T Consensus 109 ~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~ 178 (201)
T PF13851_consen 109 HEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPA 178 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 55556666666666666654443 222 234578889999999999999999999999888887654
No 79
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.18 E-value=0.024 Score=60.76 Aligned_cols=127 Identities=17% Similarity=0.273 Sum_probs=89.2
Q ss_pred hhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 586 GKKVDEREKVILDSREK----IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTI 661 (1111)
Q Consensus 586 tkeLAnLenQ~ed~~ek----ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLav 661 (1111)
++.+.++.+=|-+|... |..|+.++.++...-.+.+..+.++..+...+..-|+.++ .++.+|+.+|..
T Consensus 8 e~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~-------~e~~eL~k~L~~ 80 (201)
T PF13851_consen 8 EKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAE-------EEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHH
Confidence 35567777777775442 8888888888888777777777777655555555555555 555555555543
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHH----HHHHHHhcccc
Q 001269 662 E---DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL----TERCKKHGIDV 722 (1111)
Q Consensus 662 l---Ea~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL----~E~~~~lgvk~ 722 (1111)
- ...|+.++.++..++.+|..++ -++..|+.|...+..|-++|.... .|+++..|+|-
T Consensus 81 y~kdK~~L~~~k~rl~~~ek~l~~Lk---~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn 145 (201)
T PF13851_consen 81 YEKDKQSLQNLKARLKELEKELKDLK---WEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKN 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3457777788888888888888 888888888888888888887665 56777766653
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.18 E-value=0.012 Score=64.58 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=18.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001269 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDN 622 (1111)
Q Consensus 582 atdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~q 622 (1111)
.+++.+.+.+++.+++++.++...++..++++..++.+.+.
T Consensus 40 ~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 40 LEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433
No 81
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.11 E-value=0.021 Score=61.13 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYE-EKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyE-ee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1111)
+..|+.++-.....-.....+|++...++...+..++.|.+-.+ ..+...++|+.+|..++..+.+...++..|+..+.
T Consensus 70 vr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 70 VRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555553322 23334567777788888888888888887777766
Q ss_pred --------HHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 682 --------NMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (1111)
Q Consensus 682 --------klk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~ 716 (1111)
++..-......++..+..++.++..|..+|.|+-+
T Consensus 150 L~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 150 LENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22211244556677777777777777777777544
No 82
>PRK02224 chromosome segregation protein; Provisional
Probab=97.09 E-value=0.016 Score=73.12 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=5.7
Q ss_pred CHHHHHH-HHHHH
Q 001269 402 KPSDIQK-YSKVF 413 (1111)
Q Consensus 402 SpeDk~~-Ye~IF 413 (1111)
+|.+|.. ++.||
T Consensus 147 ~p~~R~~ii~~l~ 159 (880)
T PRK02224 147 TPSDRQDMIDDLL 159 (880)
T ss_pred CHHHHHHHHHHHh
Confidence 4555433 44554
No 83
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.09 E-value=0.013 Score=66.25 Aligned_cols=129 Identities=17% Similarity=0.187 Sum_probs=96.5
Q ss_pred hhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001269 584 TAGKKVDEREKVILDSRE-------KIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIA 656 (1111)
Q Consensus 584 dLtkeLAnLenQ~ed~~e-------kea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LE 656 (1111)
.|.++|..|+.+-..++. ....|..|-++|. ..|-.+|.+.+.++..+..+|..-.-++..+..+|..|.
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv---~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll 240 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLV---LDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL 240 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHH---HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555444444443 3456666666664 457788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 657 SKLTIEDAKFRELQERKMELHQAIVNMERG----GSADGLLQVRADRIQSDLEELLKALTERC 715 (1111)
Q Consensus 657 sQLavlEa~LqdiQ~EL~ELeqeLqklk~g----~~~n~~Lqer~~~in~el~eL~kqL~E~~ 715 (1111)
+||..++..++.+-.+..+|.+.|...+.. ..+...||+|+......|.|.+.+|..+.
T Consensus 241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988855411 15666777777777777777777776543
No 84
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.07 E-value=0.024 Score=68.47 Aligned_cols=14 Identities=21% Similarity=0.670 Sum_probs=8.2
Q ss_pred cccccccchhhhhh
Q 001269 738 IQEGAGVWDEDWDK 751 (1111)
Q Consensus 738 ~~e~a~~w~e~wd~ 751 (1111)
+.|+.+.|+.+=-.
T Consensus 348 lke~~~q~~qEk~~ 361 (546)
T PF07888_consen 348 LKEGRSQWAQEKQA 361 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 36677777654433
No 85
>PF14658 EF-hand_9: EF-hand domain
Probab=97.06 E-value=0.0012 Score=59.47 Aligned_cols=59 Identities=12% Similarity=0.231 Sum_probs=54.3
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhCC---CCHHHHHHHHHhhcCCCC-CCcCHHHHHHHHHH
Q 001269 11 SFFRRADLDGDGRISGAEAVAFFQGSN---LPKQVLAQIWMHADHNHT-SYLGRQEFYNALKL 69 (1111)
Q Consensus 11 ~iF~~lD~DgDGkISg~Ea~~ff~~SG---LP~~~LaqIW~LaD~d~D-G~LdrdEF~vAM~L 69 (1111)
..|+.+|+++.|+|...+++.+|+..+ ..+..|..+.+.+|+++. |.|+++.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 469999999999999999999999864 578999999999999888 99999999999974
No 86
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=97.05 E-value=0.0038 Score=66.06 Aligned_cols=102 Identities=14% Similarity=0.236 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001269 607 RSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERG 686 (1111)
Q Consensus 607 rsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g 686 (1111)
+..+.++...++...++|..++.++.+++..+......+.+-.+.+..|+..|..++..|+.++.-++.|+.|+..++
T Consensus 80 ~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~-- 157 (194)
T PF08614_consen 80 QEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ-- 157 (194)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 333444444555555555555444444444444444444444444445555555555555555555555555555444
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHH
Q 001269 687 GSADGLLQVRADRIQSDLEELLKAL 711 (1111)
Q Consensus 687 ~~~n~~Lqer~~~in~el~eL~kqL 711 (1111)
-+...|.++++.++.|-.+|..-+
T Consensus 158 -l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 158 -LQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555443
No 87
>PF14658 EF-hand_9: EF-hand domain
Probab=97.05 E-value=0.0013 Score=59.20 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=54.3
Q ss_pred HHHHhhCCCCCCccCHHHHHHHHHhc---CCCHHHHHHHHHhhCCCCC-CccCHHHHHHHHHH
Q 001269 411 KVFMEVDTDRDGRITGEQARNLFMSW---RLPREVLKQVWDLSDQDSD-SMLSLREFCFALYL 469 (1111)
Q Consensus 411 ~IF~slDkD~DG~ISG~Ear~~f~kS---gLP~edL~qIW~LaDiDnD-G~LdkdEF~IAMhL 469 (1111)
.+|..||+++.|.|.-..++.+|+.. +.....|..+.++.|+++. |.|+++.|+.+|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999964 5688999999999999999 99999999999974
No 88
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.04 E-value=0.032 Score=66.71 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 001269 655 IASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTER 714 (1111)
Q Consensus 655 LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~ 714 (1111)
++..+......+..+..++..|+.+|.+++ .....+.+++.++..+|.+|...+.+.
T Consensus 342 l~~~i~~~~~~i~~~~~~~~~l~~ei~~l~---~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 342 LKNKISTNKQSLITLVDKAKKVKAAIEELQ---AEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445555555566666666666 445555555666655555555555443
No 89
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.02 E-value=0.0019 Score=68.48 Aligned_cols=64 Identities=25% Similarity=0.383 Sum_probs=52.2
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHhc---CCC--HHH----HHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 001269 407 QKYSKVFMEVDTDRDGRITGEQARNLFMSW---RLP--REV----LKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1111)
Q Consensus 407 ~~Ye~IF~slDkD~DG~ISG~Ear~~f~kS---gLP--~ed----L~qIW~LaDiDnDG~LdkdEF~IAMhLI 470 (1111)
.+.+=+|.-+|.+++|+|+.+++..++... +.. .+. ++++..-+|.|+||+|+++||+-++.-.
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 455558999999999999999999998864 466 444 4555668999999999999999988743
No 90
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=97.01 E-value=0.024 Score=59.18 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 586 GKKVDEREKVILDSREKIEFYRSKMQELVLY 616 (1111)
Q Consensus 586 tkeLAnLenQ~ed~~ekea~lrsQmQEL~~y 616 (1111)
+..++.++.++.+..++...+...+..+...
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKLKED 117 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333333333333333333
No 91
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.97 E-value=0.033 Score=63.66 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 640 TLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKME 675 (1111)
Q Consensus 640 sLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~E 675 (1111)
..+.+|.+...++.+++.+|+.++..+..++.++.+
T Consensus 200 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 235 (423)
T TIGR01843 200 ELERERAEAQGELGRLEAELEVLKRQIDELQLERQQ 235 (423)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333
No 92
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.95 E-value=0.041 Score=59.99 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHH
Q 001269 602 KIEFYRSKMQELVLYKSRCDNRLNE 626 (1111)
Q Consensus 602 kea~lrsQmQEL~~yKsra~qeL~e 626 (1111)
++..+..++.++......++.++.+
T Consensus 93 ri~~lE~~l~ea~~~~ee~e~k~~E 117 (237)
T PF00261_consen 93 RIEELEQQLKEAKRRAEEAERKYEE 117 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333333333
No 93
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.89 E-value=0.027 Score=58.79 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH
Q 001269 604 EFYRSKMQELVLYKSRCDNRLNEIT 628 (1111)
Q Consensus 604 a~lrsQmQEL~~yKsra~qeL~e~~ 628 (1111)
..+..+++++..+......+|...+
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~ 115 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLK 115 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544444443
No 94
>PRK03918 chromosome segregation protein; Provisional
Probab=96.88 E-value=0.029 Score=70.73 Aligned_cols=16 Identities=6% Similarity=0.335 Sum_probs=10.4
Q ss_pred ccchhhhhhccccCCC
Q 001269 743 GVWDEDWDKFEDAGFG 758 (1111)
Q Consensus 743 ~~w~e~wd~~~d~~f~ 758 (1111)
..+++-|.+|.+..|.
T Consensus 747 ~~~~~if~~l~~~~~~ 762 (880)
T PRK03918 747 EIASEIFEELTEGKYS 762 (880)
T ss_pred HHHHHHHHHHcCCCee
Confidence 4556778888765554
No 95
>PRK02224 chromosome segregation protein; Provisional
Probab=96.88 E-value=0.027 Score=71.13 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCCcchHHHHHHHHHHHHHHHHHH
Q 001269 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME----RGGSADGLLQVRADRIQSDLEELLKA 710 (1111)
Q Consensus 635 kreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk----~g~~~n~~Lqer~~~in~el~eL~kq 710 (1111)
+..+..|+.++.+..+++..++.+|..++..+.+++.+|.+++.+|..+. .-......|+++++.++.++.+++..
T Consensus 355 e~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~ 434 (880)
T PRK02224 355 EERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEAT 434 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444444444444444433111 00122234445555555554444444
Q ss_pred HH
Q 001269 711 LT 712 (1111)
Q Consensus 711 L~ 712 (1111)
+.
T Consensus 435 ~~ 436 (880)
T PRK02224 435 LR 436 (880)
T ss_pred HH
Confidence 43
No 96
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.88 E-value=0.032 Score=75.35 Aligned_cols=108 Identities=23% Similarity=0.271 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDA-------KFRELQERKME 675 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa-------~LqdiQ~EL~E 675 (1111)
...++.+-++|+..-.....+|....++...++++...+..+|++..++++.+|..+..++. .++.++.+++.
T Consensus 896 ~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~ 975 (1930)
T KOG0161|consen 896 LERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS 975 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444555555555555555555555554443333 33333333333
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 001269 676 LHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 676 LeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
|++.+.++- .+...|+++++++..+|+..+.++..
T Consensus 976 ~~e~~~kL~---kekk~lEe~~~~l~~~l~~~eek~~~ 1010 (1930)
T KOG0161|consen 976 LDENISKLS---KEKKELEERIRELQDDLQAEEEKAKS 1010 (1930)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 44444566666666666555555443
No 97
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.87 E-value=0.07 Score=57.12 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=90.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITER--------------ALADRREAETLGKKYE 646 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq--------------~selkreLqsLR~eyE 646 (1111)
++..|+.+|..|+.++++..++...++.|+.++..-....+....-+.++ ..+.++-.+.--.+|+
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~e 84 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYE 84 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888888888888888888887766443332222222222 2222223333445888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 647 EKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERC 715 (1111)
Q Consensus 647 ee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~ 715 (1111)
++...+.-|+..|..+|.......+++.+|..++..+. +.+..|...-......++..+++|++..
T Consensus 85 EVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~---~nlk~l~~~ee~~~q~~d~~e~~ik~lt 150 (205)
T KOG1003|consen 85 EVARKLVIIEGELERAEERAEAAESQSEELEEDLRILD---SNLKSLSAKEEKLEQKEEKYEEELKELT 150 (205)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999998888888888888888888888777 6666777766667777777776665533
No 98
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.86 E-value=0.0073 Score=68.60 Aligned_cols=26 Identities=12% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 589 VDEREKVILDSREKIEFYRSKMQELV 614 (1111)
Q Consensus 589 LAnLenQ~ed~~ekea~lrsQmQEL~ 614 (1111)
+..|+.++++.....+.|..=+++|.
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455443333355555555554
No 99
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.075 Score=59.35 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=29.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAET 640 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqs 640 (1111)
+..++++++.+++++|+++-.+++.+..|.+++.....+.+.++..+..+|.+++.+|..
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444444444444444444444444444444444444444444
No 100
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.82 E-value=0.056 Score=55.27 Aligned_cols=119 Identities=21% Similarity=0.247 Sum_probs=55.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRR---EAETLGKKYEEKYKQVAEIASKLTI 661 (1111)
Q Consensus 585 LtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkr---eLqsLR~eyEee~KqV~~LEsQLav 661 (1111)
+..++..|+.+..+.-+.+..|+.+++.|.....+...+|..++....+... ++..|. +.|..||.+|..
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~-------rriq~LEeele~ 91 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLN-------RRIQLLEEELEE 91 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH-------hhHHHHHHHHHH
Confidence 3444555555554444445666666666655555555555554433322211 122233 444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 001269 662 EDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 662 lEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
.+..|+...++|.++......+. ..-..|..+.+.....+++|..++.+
T Consensus 92 ae~~L~e~~ekl~e~d~~ae~~e---Rkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 92 AEKKLKETTEKLREADVKAEHFE---RKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 55555555555554444444333 23333334444555555555555544
No 101
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.81 E-value=0.1 Score=53.44 Aligned_cols=61 Identities=21% Similarity=0.170 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 624 LNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 624 L~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
|..++.....+..+|..|+.+-++-.+.+...+.+|..+|....++..-|..++++..++.
T Consensus 61 l~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~ 121 (140)
T PF10473_consen 61 LEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLK 121 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555566666666677777777777777777777755555
No 102
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=96.81 E-value=0.0043 Score=67.06 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHH
Q 001269 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTV 72 (1111)
Q Consensus 6 ~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SG--LP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LVal 72 (1111)
.+.++++|..+|.|+.|.|+-.|++..|...| |+.+.+..|.+..|..+.|.|.+++|+.+|..+..
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~ 191 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR 191 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH
Confidence 45688999999999999999999999999976 99999999999999888899999999988765543
No 103
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.80 E-value=0.041 Score=73.49 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRE 668 (1111)
Q Consensus 589 LAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~Lqd 668 (1111)
|.+++..+.++..++..|+.+.++...|+......+ ....++......++.|..++++....+++++.++..++..+..
T Consensus 309 L~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~l-r~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeElee 387 (1486)
T PRK04863 309 LVEMARELAELNEAESDLEQDYQAASDHLNLVQTAL-RQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEA 387 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444433322111 1122223334444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHH
Q 001269 669 LQERKMELHQAIVN 682 (1111)
Q Consensus 669 iQ~EL~ELeqeLqk 682 (1111)
++.++.+|+.++.+
T Consensus 388 lEeeLeeLqeqLae 401 (1486)
T PRK04863 388 AEEEVDELKSQLAD 401 (1486)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 104
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.79 E-value=0.035 Score=63.24 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q 001269 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1111)
Q Consensus 651 qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1111)
.++.+.++|+.+...+..++.++.+++.++++++ ..-..+.+++.+++.+|.++++.+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~---~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELE---SKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666666666666666555 444455566666666666666544
No 105
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.79 E-value=0.039 Score=65.48 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 659 LTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 659 LavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
+..+++.+..++.++..|+.++.+++
T Consensus 319 l~~~~~~~~~l~~~~~~l~~~~~~~~ 344 (498)
T TIGR03007 319 LAEAEAEIASLEARVAELTARIERLE 344 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333
No 106
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.79 E-value=0.055 Score=72.39 Aligned_cols=123 Identities=19% Similarity=0.170 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----C---CCcchHHH
Q 001269 623 RLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERG----G---SADGLLQV 695 (1111)
Q Consensus 623 eL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g----~---~~n~~Lqe 695 (1111)
+|.+..+.+.+.+.++..++.++++..++++.++.+++.++..+..++.++.++++++.++.+. + =.+..|+.
T Consensus 363 ~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~ 442 (1486)
T PRK04863 363 RLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAED 442 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 3333333333444444444444444444555555555555555555566665555555544422 1 13345555
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHhccccccceeeecCCCcCCCcccccccch
Q 001269 696 RADRIQSDLEELLKAL--------------TERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWD 746 (1111)
Q Consensus 696 r~~~in~el~eL~kqL--------------~E~~~~lgvk~k~~~~ielp~gw~~~~~e~a~~w~ 746 (1111)
.+++....+++++.+| ....+.++...+....|+-+--|+ -..|.-..|.
T Consensus 443 ~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~-~~~~~~~~~~ 506 (1486)
T PRK04863 443 WLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWD-VARELLRRLR 506 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH-HHHHHHHHhH
Confidence 5555554444444444 334445555556666666666665 2333344444
No 107
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.79 E-value=0.039 Score=61.40 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKF 666 (1111)
Q Consensus 587 keLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~L 666 (1111)
.+|++|+.|+++++..-..-+-||+-|+.--.++.+...+-+.+.+.++|+.+.|.-.|++..+..+. +.+.|
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqK-------lshdl 90 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQK-------LSHDL 90 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHH-------hhHHH
Confidence 67888888888755432222233333333222222233333555668899999998555555544443 34444
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001269 667 RELQERKMELHQAIVNME 684 (1111)
Q Consensus 667 qdiQ~EL~ELeqeLqklk 684 (1111)
+-+..+++-|+.+|...+
T Consensus 91 q~Ke~qv~~lEgQl~s~K 108 (307)
T PF10481_consen 91 QVKESQVNFLEGQLNSCK 108 (307)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 108
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.77 E-value=0.04 Score=72.48 Aligned_cols=135 Identities=16% Similarity=0.259 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 001269 588 KVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQV-AEIASKLTIEDAKF 666 (1111)
Q Consensus 588 eLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV-~~LEsQLavlEa~L 666 (1111)
.|+.+.++.+++.+....+.++++++......+..++......+..++.+...++.++++.++.- ..++.+|+.++..+
T Consensus 615 ~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 694 (1201)
T PF12128_consen 615 QLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEEL 694 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333355566666666666666666666666666666666666666666666544 45666666666666
Q ss_pred HHHHHHHHHHHHHHHHHhhc---------CCCcchHHHHHHHHHHHHH-----------HHHHHHHHHHHHhcccc
Q 001269 667 RELQERKMELHQAIVNMERG---------GSADGLLQVRADRIQSDLE-----------ELLKALTERCKKHGIDV 722 (1111)
Q Consensus 667 qdiQ~EL~ELeqeLqklk~g---------~~~n~~Lqer~~~in~el~-----------eL~kqL~E~~~~lgvk~ 722 (1111)
+.++.++.++.+++.+..+. ....+.|.++++.|..+++ +|+++++...+--||..
T Consensus 695 ~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~ 770 (1201)
T PF12128_consen 695 KQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDP 770 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 66665555555554311100 1233444455555444444 55555555555567765
No 109
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.71 E-value=0.17 Score=50.85 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=39.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------CCcchHHHHHHHHHHHH
Q 001269 633 ADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGG--------SADGLLQVRADRIQSDL 704 (1111)
Q Consensus 633 elkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~--------~~n~~Lqer~~~in~el 704 (1111)
.....+.....+|+.++..-+..-..|..+...+..++.++.+|+.++...+..- .+-..|++.+..++.-+
T Consensus 35 ~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~ 114 (132)
T PF07926_consen 35 SQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRI 114 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666655555555555555555555555555555555333110 12234444444444444
Q ss_pred HHHHHHH
Q 001269 705 EELLKAL 711 (1111)
Q Consensus 705 ~eL~kqL 711 (1111)
++|..|+
T Consensus 115 ~dL~~QN 121 (132)
T PF07926_consen 115 EDLNEQN 121 (132)
T ss_pred HHHHHHH
Confidence 5544444
No 110
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.67 E-value=0.11 Score=60.20 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 595 VILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKM 674 (1111)
Q Consensus 595 Q~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ 674 (1111)
|++..++.-+..++++-++...+.+++++|..++++...+...|..|..+|.+-..+.+.|..+-..+.+.-.+++.+-.
T Consensus 110 El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~ 189 (499)
T COG4372 110 ELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVL 189 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444555555555555555555555554444444444444443333333333333333333333344444
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 001269 675 ELHQAIVNMERGGSADGLLQVRADRIQSDLEE 706 (1111)
Q Consensus 675 ELeqeLqklk~g~~~n~~Lqer~~~in~el~e 706 (1111)
+|+..-.+++ .++..|..|.+.+++-..|
T Consensus 190 ~L~~r~~~ie---Q~~~~la~r~~a~q~r~~e 218 (499)
T COG4372 190 DLKLRSAQIE---QEAQNLATRANAAQARTEE 218 (499)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4444444444 4444455555544443333
No 111
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=96.67 E-value=0.0049 Score=64.03 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHH
Q 001269 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGS--NLPKQVLAQIWMHADHNHTSYLGRQEFYNALK 68 (1111)
Q Consensus 6 ~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~S--GLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~ 68 (1111)
.......|+..|.|++|+|+..+++.+...- +|.+++|..+++-||.|+||-|+-+||+..|+
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 4567788999999999999999999999886 59999999999999999999999999998875
No 112
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.67 E-value=0.089 Score=65.98 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001269 691 GLLQVRADRIQSDLEELLKALTERCKKHGI 720 (1111)
Q Consensus 691 ~~Lqer~~~in~el~eL~kqL~E~~~~lgv 720 (1111)
..+++-+.+...+|++|.+++++.-+++|+
T Consensus 688 ~~I~~iL~~~~~~I~~~v~~ik~i~~~~~~ 717 (717)
T PF10168_consen 688 RTIKEILKQQGEEIDELVKQIKNIKKIVNF 717 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 456666777778888888888888777764
No 113
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=96.66 E-value=0.0065 Score=65.67 Aligned_cols=68 Identities=21% Similarity=0.352 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q 001269 405 DIQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1111)
Q Consensus 405 Dk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kS--gLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~ 472 (1111)
-.+.++++|..+|+|+.|.|+-.||+..|..+ .|+.+.+.-|.+-.|....|.|.+++|+.++-.+.+
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~ 191 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR 191 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH
Confidence 56789999999999999999999999999987 699999999999999888999999999876654443
No 114
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.66 E-value=0.0042 Score=72.37 Aligned_cols=69 Identities=22% Similarity=0.345 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhCCCCCCccCHHHHHHHHHh----c--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHh
Q 001269 406 IQKYSKVFMEVDTDRDGRITGEQARNLFMS----W--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYR 474 (1111)
Q Consensus 406 k~~Ye~IF~slDkD~DG~ISG~Ear~~f~k----S--gLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~~~ 474 (1111)
|.-++.||+.+|+|+.|.|+-+|.+....- . -+..+.+.++-+..|.++||.||+.||+-|.+|+.+.+
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~~ 620 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRRR 620 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcchh
Confidence 456788999999999999999998876652 1 58999999999999999999999999999999999865
No 115
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.66 E-value=0.011 Score=56.35 Aligned_cols=70 Identities=10% Similarity=0.169 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHh-------CCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001269 6 QDQFESFFRRADLDGDGRISGAEAVAFFQG-------SNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (1111)
Q Consensus 6 ~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~-------SGLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValAQ~G 76 (1111)
+.....+|.++-.+ .+.++..|++.++.+ ..-.+..+.+|++..|.|+||.|++.||+..+.-|++|-+.
T Consensus 7 i~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ac~~ 83 (91)
T cd05024 7 MEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIACND 83 (91)
T ss_pred HHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 34567789888754 569999999999865 34578999999999999999999999999999999888553
No 116
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.65 E-value=0.041 Score=66.55 Aligned_cols=81 Identities=22% Similarity=0.211 Sum_probs=46.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 001269 627 ITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEE 706 (1111)
Q Consensus 627 ~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~e 706 (1111)
+..++..++.++..|+.+|++..+.+...+.++-+.+..|.+++.++.-+..-+..++ .+..-|+....+|..+|+.
T Consensus 111 ~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le---~e~~~Lk~en~rl~~~l~~ 187 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE---DELKRLKAENSRLREELAR 187 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHH
Confidence 3345556666777777777777776666666665555555555555555555555554 4444445555555555544
Q ss_pred HHHH
Q 001269 707 LLKA 710 (1111)
Q Consensus 707 L~kq 710 (1111)
+.++
T Consensus 188 ~r~~ 191 (546)
T KOG0977|consen 188 ARKQ 191 (546)
T ss_pred HHHH
Confidence 4443
No 117
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.63 E-value=0.054 Score=64.81 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=16.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 625 NEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1111)
Q Consensus 625 ~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavl 662 (1111)
+++..++.+++..+..++..+++..+....|+..|..+
T Consensus 333 ~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l 370 (562)
T PHA02562 333 NEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEEL 370 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433
No 118
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.62 E-value=0.17 Score=54.32 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCcchHHHHHHHHHHHHHHHHHHHHH
Q 001269 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERG-----GSADGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 650 KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g-----~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
.++...+.++..++..++++..+|..++.+|+.+++- -.+-..|+.++..++..+++-.+.+.+
T Consensus 75 ~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~ 143 (194)
T PF15619_consen 75 ERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQE 143 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666677777777777777777766542 223445555555555555544444433
No 119
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.60 E-value=0.0043 Score=72.25 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=61.6
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHh------CCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHH
Q 001269 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQG------SNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVA 73 (1111)
Q Consensus 5 ~~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~------SGLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValA 73 (1111)
++..++.||+++|.|..|.|+.+|++...+- -.+.++.+.++-+..|-|+||++|..||..|.+||...
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~ 619 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRR 619 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcch
Confidence 4566789999999999999999999876654 25899999999999999999999999999999999874
No 120
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.59 E-value=0.042 Score=74.26 Aligned_cols=125 Identities=17% Similarity=0.195 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 588 KVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFR 667 (1111)
Q Consensus 588 eLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~Lq 667 (1111)
+..+++.++.+...+......+..+|..++...++++..++..+.+++..+..|+.++.....++++|+..+..++..+.
T Consensus 902 ~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~ 981 (1930)
T KOG0161|consen 902 EKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENIS 981 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444456666667777777777777777777777777777778888888888888888877777766666
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 668 ELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERC 715 (1111)
Q Consensus 668 diQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~ 715 (1111)
.+..+...|++.+.++. +.-...++++.+++.....|+.+|.+.+
T Consensus 982 kL~kekk~lEe~~~~l~---~~l~~~eek~~~l~k~~~kle~~l~~le 1026 (1930)
T KOG0161|consen 982 KLSKEKKELEERIRELQ---DDLQAEEEKAKSLNKAKAKLEQQLDDLE 1026 (1930)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555666665555 4444444555554444444444444333
No 121
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.59 E-value=0.036 Score=69.17 Aligned_cols=172 Identities=16% Similarity=0.236 Sum_probs=88.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSREK--------IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQV 652 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ek--------ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV 652 (1111)
|...++..+.+|+..+|-++.. ...-..||++|+.|..|..+-|-.++.-.+..+.+.+.+.++.|.+...+
T Consensus 333 eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~ 412 (1243)
T KOG0971|consen 333 EVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSEL 412 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHH
Confidence 4444555556665555544432 23344577788888777777666655444444555555544444444444
Q ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH------HHHHHHHHHHhc
Q 001269 653 AE-------IASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEEL------LKALTERCKKHG 719 (1111)
Q Consensus 653 ~~-------LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL------~kqL~E~~~~lg 719 (1111)
.+ |..+|..+|+.+.++|+++..--.+..=..|=.+.|-+|.+|+..+..++++| ..||.|-.+.+-
T Consensus 413 ~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele 492 (1243)
T KOG0971|consen 413 EELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELE 492 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 44445555555555555543222221111111266777777777777665544 456666555444
Q ss_pred cccccceeeecCCCcC-------CCcccccccchhhhhhccc
Q 001269 720 IDVKSHAVIELPFGWQ-------PGIQEGAGVWDEDWDKFED 754 (1111)
Q Consensus 720 vk~k~~~~ielp~gw~-------~~~~e~a~~w~e~wd~~~d 754 (1111)
+.+|-+ |++=-|-- .--||.+++.|----||-+
T Consensus 493 ~DLreE--ld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRe 532 (1243)
T KOG0971|consen 493 LDLREE--LDMAKGARKELQKRVEAAQETVYDRDQTIKKFRE 532 (1243)
T ss_pred HHHHHH--HHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444332 22222211 1236667776665556643
No 122
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.56 E-value=0.038 Score=70.72 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=12.0
Q ss_pred CHHHHHHHHHhcCCCHH
Q 001269 425 TGEQARNLFMSWRLPRE 441 (1111)
Q Consensus 425 SG~Ear~~f~kSgLP~e 441 (1111)
++..++.||.+-+|+..
T Consensus 653 ~aq~cI~fl~~~nLgra 669 (1293)
T KOG0996|consen 653 TAQECINFLKKNNLGRA 669 (1293)
T ss_pred HHHHHHHHHHHcCCCce
Confidence 56677888877776654
No 123
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.55 E-value=0.027 Score=69.37 Aligned_cols=131 Identities=19% Similarity=0.259 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHH---------------------HHHHHHhHHHHHHHHH
Q 001269 586 GKKVDEREKVILD-SREKIEFYRSKMQELVLYKSRCDNRLNEI---------------------TERALADRREAETLGK 643 (1111)
Q Consensus 586 tkeLAnLenQ~ed-~~ekea~lrsQmQEL~~yKsra~qeL~e~---------------------~eq~selkreLqsLR~ 643 (1111)
++.|..|+.++.+ ...+.+..+...+.|+..-..|+.+|+++ +++...+...++.||+
T Consensus 38 d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~ 117 (660)
T KOG4302|consen 38 DKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRK 117 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHH
Confidence 3444555554444 23334444555555555555555555544 4455566677777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHH
Q 001269 644 KYEEKYKQVAEIASKLTIEDAKFREL---------------QERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELL 708 (1111)
Q Consensus 644 eyEee~KqV~~LEsQLavlEa~Lqdi---------------Q~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~ 708 (1111)
+|++..+++.+|..|++-+...|... ..+|.+|++.|+.++ +|+.++++ ++.+++
T Consensus 118 qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~---------~ek~~Rle-kv~~~~ 187 (660)
T KOG4302|consen 118 QKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQ---------KEKSDRLE-KVLELK 187 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHH---------HHHHHHHH-HHHHHH
Confidence 88888888888887776664443322 267777777777777 55555554 356788
Q ss_pred HHHHHHHHHhccccccce
Q 001269 709 KALTERCKKHGIDVKSHA 726 (1111)
Q Consensus 709 kqL~E~~~~lgvk~k~~~ 726 (1111)
+.+...|..||+++.-++
T Consensus 188 ~~I~~l~~~Lg~~~~~~v 205 (660)
T KOG4302|consen 188 EEIKSLCSVLGLDFSMTV 205 (660)
T ss_pred HHHHHHHHHhCCCcccch
Confidence 888999999999998444
No 124
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.55 E-value=0.11 Score=65.13 Aligned_cols=87 Identities=11% Similarity=0.107 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q 001269 634 DRREAETLGKKYEEKYKQV-AEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALT 712 (1111)
Q Consensus 634 lkreLqsLR~eyEee~KqV-~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~ 712 (1111)
++.+++.|+++++++.+.+ ..++.+++.+.+..+.++.+++++++++.++-+...+-..|+.+++..+.-.+.|..+++
T Consensus 321 l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~ 400 (754)
T TIGR01005 321 AKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYR 400 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444332 334444444455555555555555555554443334455566666666666666666666
Q ss_pred HHHHHhcc
Q 001269 713 ERCKKHGI 720 (1111)
Q Consensus 713 E~~~~lgv 720 (1111)
|-......
T Consensus 401 e~~~~~~~ 408 (754)
T TIGR01005 401 QAASRQNY 408 (754)
T ss_pred HHHHhhcC
Confidence 64333333
No 125
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.54 E-value=0.18 Score=55.15 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1111)
Q Consensus 586 tkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavl 662 (1111)
+.+|..|+.++..++....-...+++++...-.-.+++|..+..++......|..|..++......+..|+.+....
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~ 167 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKA 167 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 34555566666555555555555666666655556666666666666666666666666555555555555544333
No 126
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=96.54 E-value=0.13 Score=56.38 Aligned_cols=92 Identities=22% Similarity=0.204 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 001269 611 QELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSAD 690 (1111)
Q Consensus 611 QEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n 690 (1111)
+++.....++..++..+++++.+++..|+..+.++++....++...+.|.......+....++.++..++...+ ..-
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~l 135 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERK---QRL 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 33333444444445555555555555555555555554454444444444333333344444444444444444 222
Q ss_pred chHHHHHHHHHHHHH
Q 001269 691 GLLQVRADRIQSDLE 705 (1111)
Q Consensus 691 ~~Lqer~~~in~el~ 705 (1111)
..|+.++......+-
T Consensus 136 ~~l~~~l~~~r~~l~ 150 (302)
T PF10186_consen 136 SQLQSQLARRRRQLI 150 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 234444444444433
No 127
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.53 E-value=0.0049 Score=71.96 Aligned_cols=55 Identities=27% Similarity=0.363 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHH
Q 001269 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVT 71 (1111)
Q Consensus 6 ~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SGLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LVa 71 (1111)
..+++.+|+.+|.|+||+|+.+|+.. +..+|..+|.|+||.|+++||..+|+-+-
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999999842 57899999999999999999999987653
No 128
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.53 E-value=0.032 Score=69.71 Aligned_cols=17 Identities=35% Similarity=0.249 Sum_probs=10.0
Q ss_pred CHHHHHHHHHhhCCCCC
Q 001269 439 PREVLKQVWDLSDQDSD 455 (1111)
Q Consensus 439 P~edL~qIW~LaDiDnD 455 (1111)
+...+.+|.+-.+.+.+
T Consensus 83 Sr~v~~~VV~~L~L~~~ 99 (754)
T TIGR01005 83 SNEILKQVVDKLGLARL 99 (754)
T ss_pred cHHHHHHHHHHcCCCCC
Confidence 44566666666665544
No 129
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.52 E-value=0.09 Score=66.63 Aligned_cols=90 Identities=17% Similarity=0.337 Sum_probs=65.5
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Q 001269 621 DNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRI 700 (1111)
Q Consensus 621 ~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~i 700 (1111)
+.+|+++..++...++.++.-+.+++.....+..|+-.+..++..++..+.+|.+++.+|..++ .+.+.|...++.+
T Consensus 786 e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~---~e~~~l~~kv~~~ 862 (1174)
T KOG0933|consen 786 ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLK---SELGNLEAKVDKV 862 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhH
Confidence 3447777777777777777777777777777777777777777777777777777777777777 7777777777777
Q ss_pred HHHHHHHHHHHHH
Q 001269 701 QSDLEELLKALTE 713 (1111)
Q Consensus 701 n~el~eL~kqL~E 713 (1111)
..+..+++.+|++
T Consensus 863 ~~~~~~~~~el~~ 875 (1174)
T KOG0933|consen 863 EKDVKKAQAELKD 875 (1174)
T ss_pred HhHHHHHHHHHHH
Confidence 7777777777765
No 130
>PLN02964 phosphatidylserine decarboxylase
Probab=96.51 E-value=0.0063 Score=74.89 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=32.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Q 001269 9 FESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKL 69 (1111)
Q Consensus 9 Y~~iF~~lD~DgDGkISg~Ea~~ff~~SG--LP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~L 69 (1111)
.+++|..+|.|+||.|+-.|+..+|...+ .+.++|..+++.+|.|++|+|+.+||..+|..
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 44555555555555555555555555433 44555555555555555555555555554443
No 131
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.50 E-value=0.2 Score=50.99 Aligned_cols=95 Identities=13% Similarity=0.196 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 001269 612 ELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADG 691 (1111)
Q Consensus 612 EL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~ 691 (1111)
.|.....+...++..++..+..++..++.+..++.....+...++.++..++..++..+.+++.|...++..+ .
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~------t 129 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK------T 129 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Confidence 3333333333334444444444444444444444444455555666666666666666666666666666555 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 001269 692 LLQVRADRIQSDLEELLKALT 712 (1111)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~ 712 (1111)
.....++..+.|++.|+.+|.
T Consensus 130 q~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 130 QYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455666677777777777764
No 132
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.50 E-value=0.037 Score=65.64 Aligned_cols=13 Identities=31% Similarity=0.355 Sum_probs=5.6
Q ss_pred HHHHHHHHhhCCC
Q 001269 441 EVLKQVWDLSDQD 453 (1111)
Q Consensus 441 edL~qIW~LaDiD 453 (1111)
..+..|++-.+.+
T Consensus 81 ~v~~~vi~~l~l~ 93 (498)
T TIGR03007 81 PNLEKVIRMLDLD 93 (498)
T ss_pred HHHHHHHHHcCCC
Confidence 3444444444443
No 133
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.48 E-value=0.11 Score=66.61 Aligned_cols=137 Identities=18% Similarity=0.218 Sum_probs=77.4
Q ss_pred hhhhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHH-------HHH
Q 001269 583 TTAGKKVDEREKVILDSREK------IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYE-------EKY 649 (1111)
Q Consensus 583 tdLtkeLAnLenQ~ed~~ek------ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyE-------ee~ 649 (1111)
.|+..||..|.+.+...|+| ++.|+.+..++... ...|.++..++..++.+|..|+..|- .-+
T Consensus 407 Kd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~----~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~ 482 (1041)
T KOG0243|consen 407 KDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEM----AEQIEELEEELENLEKQLKDLTELYMNQLEIKELLK 482 (1041)
T ss_pred HHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 36677888888888888887 55554332222111 12233334444444555555554444 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 001269 650 KQVAEIASKLTIEDAKFRELQERKMELHQA-------IVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDV 722 (1111)
Q Consensus 650 KqV~~LEsQLavlEa~LqdiQ~EL~ELeqe-------Lqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk~ 722 (1111)
++++.++.+|...+..|...++++.+++.. |.++. .-...|..|+..++..+++.+.-++..-+++|=+-
T Consensus 483 ~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~---~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~ 559 (1041)
T KOG0243|consen 483 EEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQE---KSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKD 559 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444445555444444444555555544444 33444 55567777788888888888888877666666666
Q ss_pred ccce
Q 001269 723 KSHA 726 (1111)
Q Consensus 723 k~~~ 726 (1111)
+++.
T Consensus 560 ~~~d 563 (1041)
T KOG0243|consen 560 RLDD 563 (1041)
T ss_pred cccc
Confidence 6543
No 134
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=96.48 E-value=0.0058 Score=65.23 Aligned_cols=74 Identities=22% Similarity=0.221 Sum_probs=61.9
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHh--cCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHhcCCCCC
Q 001269 407 QKYSKVFMEVDTDRDGRITGEQARNLFMS--WRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERYREGRPLP 480 (1111)
Q Consensus 407 ~~Ye~IF~slDkD~DG~ISG~Ear~~f~k--SgLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~~~~G~~LP 480 (1111)
..-+.+|..+|+|+||+|+..|....|.. .|-..+-|+=...|.|.|+||.|+++|++-.+.-|+........|
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~ 139 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP 139 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCC
Confidence 44456888999999999999997777764 388899999888899999999999999999988888876554443
No 135
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=96.48 E-value=0.13 Score=50.46 Aligned_cols=79 Identities=13% Similarity=0.254 Sum_probs=36.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 583 TTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1111)
Q Consensus 583 tdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavl 662 (1111)
.++...|+.|+..|++.+.....|-++-.+ ++.-++.|+.+-+..++.|.+|+.+|..+
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~---------------------L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQ---------------------LRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777775555444433333333 34444444444444444444555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001269 663 DAKFRELQERKMELHQAIVN 682 (1111)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqk 682 (1111)
...|.+.+.-+.+|+..+.+
T Consensus 71 ~~~le~eK~ak~~l~~r~~k 90 (107)
T PF09304_consen 71 RRNLEDEKQAKLELESRLLK 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444433333334433333
No 136
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.46 E-value=0.21 Score=55.92 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 692 LLQVRADRIQSDLEELLKALTERCK 716 (1111)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E~~~ 716 (1111)
.++..|..+..+|.+|..++.....
T Consensus 259 ~~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 259 EYQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchhHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 137
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.45 E-value=0.18 Score=58.47 Aligned_cols=119 Identities=11% Similarity=0.125 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 001269 588 KVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLG---KKYEEKYKQVAEIASKLTIEDA 664 (1111)
Q Consensus 588 eLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR---~eyEee~KqV~~LEsQLavlEa 664 (1111)
+|+.|.+|+-++......+.+|..+|+.++....++-+++...+++++-.+..|. +++|++.+.+..-.+++...+.
T Consensus 138 ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ 217 (499)
T COG4372 138 ELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTE 217 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344443333344444455555555544443333333322233333333332 2233333333333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 665 KFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (1111)
Q Consensus 665 ~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~ 716 (1111)
.|...+..++++.++|++.. ..|++.+.++..-.++++|+-.
T Consensus 218 ela~r~aa~Qq~~q~i~qrd----------~~i~q~~q~iaar~e~I~~re~ 259 (499)
T COG4372 218 ELARRAAAAQQTAQAIQQRD----------AQISQKAQQIAARAEQIRERER 259 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhHHHHHHHHHH
Confidence 45555555555555554433 5666667777666666665433
No 138
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=0.061 Score=68.95 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHHHH
Q 001269 586 GKKVDEREKVILDS 599 (1111)
Q Consensus 586 tkeLAnLenQ~ed~ 599 (1111)
..+|.+|+.||+++
T Consensus 864 ~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 864 EEQIEELKKEVEEL 877 (1293)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555554
No 139
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.43 E-value=0.0027 Score=48.34 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=20.9
Q ss_pred HHHHHHHhhcCCCCCCcCHHHHHHHHH
Q 001269 42 VLAQIWMHADHNHTSYLGRQEFYNALK 68 (1111)
Q Consensus 42 ~LaqIW~LaD~d~DG~LdrdEF~vAM~ 68 (1111)
++.+|++..|.|+||+|+++||..+|+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 366778888888888888888887775
No 140
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=96.42 E-value=0.077 Score=59.33 Aligned_cols=97 Identities=19% Similarity=0.239 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 587 KKVDEREKVILDSRE---KIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIED 663 (1111)
Q Consensus 587 keLAnLenQ~ed~~e---kea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlE 663 (1111)
.+|.++.+.+.++.. +.+|||+++.++...+...+ .......++...+|+|+..+.+.+....+++..|..|..+.
T Consensus 149 ~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~-~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~ 227 (269)
T PF05278_consen 149 SDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYD-QHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIK 227 (269)
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555443 48999999999988876553 22333445556788888888888887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 001269 664 AKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 664 a~LqdiQ~EL~ELeqeLqklk 684 (1111)
..+.+++.+|.+|+.+-.++.
T Consensus 228 ~~i~e~~~rl~~l~~~~~~l~ 248 (269)
T PF05278_consen 228 ERITEMKGRLGELEMESTRLS 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766665
No 141
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.39 E-value=0.22 Score=58.88 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=10.6
Q ss_pred CC---CCC-CCCCccccccC
Q 001269 868 WG---AFD-NDDTDSVWGFN 883 (1111)
Q Consensus 868 wg---~fd-~~d~ds~w~~~ 883 (1111)
|| --| ++-.-||.|+|
T Consensus 351 YG~vvIldhG~gy~slyg~~ 370 (420)
T COG4942 351 YGLVVILDHGGGYHSLYGGN 370 (420)
T ss_pred CceEEEEEcCCccEEEeccc
Confidence 66 456 44555888888
No 142
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.39 E-value=0.055 Score=66.80 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=58.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDA 664 (1111)
Q Consensus 585 LtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa 664 (1111)
++.++++++..+.+.+-|.+.+..++++|+.+...+....+.+.+.+...++++++|.....+-..|++++...+.-+|.
T Consensus 328 ltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~ 407 (1265)
T KOG0976|consen 328 LTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQ 407 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45666666666666666777888888888888888777777777777777777777776666666777777777655544
Q ss_pred H
Q 001269 665 K 665 (1111)
Q Consensus 665 ~ 665 (1111)
-
T Consensus 408 ~ 408 (1265)
T KOG0976|consen 408 G 408 (1265)
T ss_pred c
Confidence 4
No 143
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=96.36 E-value=0.0069 Score=64.69 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=62.4
Q ss_pred CccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhc
Q 001269 3 GPNQDQFESFFRRADLDGDGRISGAEAVAFFQGS--NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQS 75 (1111)
Q Consensus 3 ~~~~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~S--GLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValAQ~ 75 (1111)
|....+-+.+|+.+|.|+||.|+-.|+...|... |-..+-|.=.+.|.|.|+||+|+++|++..+.-|..-..
T Consensus 60 gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~ 134 (193)
T KOG0044|consen 60 GDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTG 134 (193)
T ss_pred CCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcc
Confidence 3445667789999999999999999988877663 888999998899999999999999999999888865444
No 144
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.35 E-value=0.31 Score=61.39 Aligned_cols=83 Identities=12% Similarity=0.264 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh---HHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 602 KIEFYRSKMQELVLYKSRCDNRL---NEIT-------ERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQE 671 (1111)
Q Consensus 602 kea~lrsQmQEL~~yKsra~qeL---~e~~-------eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~ 671 (1111)
..+.||.++.+|...+..+++-. .+.. ++..+++..+..|+.+..+-+.+.+.+..|+.+++...-++.+
T Consensus 387 e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~ 466 (980)
T KOG0980|consen 387 EQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEE 466 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35677888888887777776654 2222 3444455555556666666666777888888888888778888
Q ss_pred HHHHHHHHHHHHh
Q 001269 672 RKMELHQAIVNME 684 (1111)
Q Consensus 672 EL~ELeqeLqklk 684 (1111)
++.+|...|.+++
T Consensus 467 ~~~~L~d~le~~~ 479 (980)
T KOG0980|consen 467 ENTNLNDQLEELQ 479 (980)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888777
No 145
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.32 E-value=0.17 Score=61.23 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=40.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSRE---KIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIAS 657 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~e---kea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEs 657 (1111)
++.+++++..+|.++|..... +++.+|++..-|+.-..+.+.=+..++..+......|+.|..+|+++-.+++.|++
T Consensus 236 ~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~ 315 (581)
T KOG0995|consen 236 EIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQK 315 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777764322 36666666555554444444444444444444444444444444444444444444
Q ss_pred H
Q 001269 658 K 658 (1111)
Q Consensus 658 Q 658 (1111)
+
T Consensus 316 ~ 316 (581)
T KOG0995|consen 316 E 316 (581)
T ss_pred H
Confidence 3
No 146
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.30 E-value=0.061 Score=71.40 Aligned_cols=20 Identities=25% Similarity=0.682 Sum_probs=11.4
Q ss_pred CCCCCCCCHHHH-HHHHHHHH
Q 001269 395 QVPWPKMKPSDI-QKYSKVFM 414 (1111)
Q Consensus 395 ~~dWp~ISpeDk-~~Ye~IF~ 414 (1111)
++.|+...|.++ ..++.||.
T Consensus 160 e~~~~~~~~~~rk~~~d~if~ 180 (1311)
T TIGR00606 160 DSNWPLSEGKALKQKFDEIFS 180 (1311)
T ss_pred ccccccCChHHHHHHHHHHhh
Confidence 446865455544 44677763
No 147
>PLN02964 phosphatidylserine decarboxylase
Probab=96.30 E-value=0.012 Score=72.48 Aligned_cols=68 Identities=16% Similarity=0.312 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHH
Q 001269 402 KPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYL 469 (1111)
Q Consensus 402 SpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kS--gLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhL 469 (1111)
+.+++...+.+|..+|.|++|.|+.+|+..++... +.+.++|..+.++.|.|++|.|+.+||.-+|..
T Consensus 174 te~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 174 VETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 44555567888888888889999999988888765 378888999999999999999999999876654
No 148
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.24 E-value=0.0098 Score=69.50 Aligned_cols=57 Identities=26% Similarity=0.230 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q 001269 405 DIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1111)
Q Consensus 405 Dk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSgLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~ 472 (1111)
-+..++.+|..+|+|+||+|+.+|+.. +..+++++|.|+||+|+++||..+|..+.+
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 567889999999999999999999842 688999999999999999999999987765
No 149
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.23 E-value=0.22 Score=53.82 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=90.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLa 660 (1111)
|+.-|...|.+.++++..-...+=.|+.++.++...-...+.++..+......-..+++....+++.....++.|..+|.
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 44445555555555554433346778888888777777777777777666665666777777777777777778888888
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 661 IEDAKFRELQERKMEL-----------HQAIVNMER--GGSADGLLQVRADRIQSDLEELLKALTERC 715 (1111)
Q Consensus 661 vlEa~LqdiQ~EL~EL-----------eqeLqklk~--g~~~n~~Lqer~~~in~el~eL~kqL~E~~ 715 (1111)
.+|..+..++..+..+ +....+++. +...-..|+..++++.++|..+..+..+..
T Consensus 91 ~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~ 158 (202)
T PF06818_consen 91 QLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQR 158 (202)
T ss_pred hhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 8888888888777776 111122221 234567788999999999888777765543
No 150
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.21 E-value=0.12 Score=63.06 Aligned_cols=51 Identities=22% Similarity=0.209 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001269 666 FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHG 719 (1111)
Q Consensus 666 LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lg 719 (1111)
+..++.++.+|.+++..++ .+-..+++.+..+..+..+...+|.++++.+.
T Consensus 378 ysel~e~leel~e~leeie---~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 378 YSELQEELEEILKQLEEIE---KEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777 66667777777777777777777777655543
No 151
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.19 E-value=0.16 Score=63.08 Aligned_cols=43 Identities=14% Similarity=-0.107 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH
Q 001269 593 EKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADR 635 (1111)
Q Consensus 593 enQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selk 635 (1111)
+.||-.+..+...+..+.|.|+...+..+..|++...++.+.+
T Consensus 105 ~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~ 147 (1265)
T KOG0976|consen 105 ESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLN 147 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3333333333444455555555555555555555444443333
No 152
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.18 E-value=0.11 Score=61.27 Aligned_cols=17 Identities=18% Similarity=0.473 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHhh
Q 001269 400 KMKPSDIQKYSKVFMEV 416 (1111)
Q Consensus 400 ~ISpeDk~~Ye~IF~sl 416 (1111)
+|+..|.-+|-.+|...
T Consensus 85 ~mt~~Dll~F~~~~~~~ 101 (493)
T KOG0804|consen 85 YMTSHDLLRFCASFIKQ 101 (493)
T ss_pred cccHHHHHHHHHHHhhh
Confidence 89999999999998763
No 153
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=96.16 E-value=0.27 Score=54.08 Aligned_cols=80 Identities=8% Similarity=0.052 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk 682 (1111)
....+++..++...+....++++.++.++..++...+.|...++.+.+.+++|+.++..++...+.+.--+.++-.+|..
T Consensus 37 ~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 37 AQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666667777776677777777777777777777766666666666666665
No 154
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.15 E-value=0.093 Score=57.63 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHH
Q 001269 585 AGKKVDEREKVILDSREK---IEFYRSKMQELVLYKSRCDNRLNEIT 628 (1111)
Q Consensus 585 LtkeLAnLenQ~ed~~ek---ea~lrsQmQEL~~yKsra~qeL~e~~ 628 (1111)
+++..++|..+++...+. +.-|++++++|+..|.++.++|+.+.
T Consensus 13 lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~ 59 (230)
T PF10146_consen 13 LEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQIN 59 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333322 55555555556555555555555544
No 155
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.14 E-value=0.25 Score=56.41 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=87.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAK 665 (1111)
Q Consensus 586 tkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~ 665 (1111)
..++++++.++..+.+.++.+..++++|+..+.+..++|..+..+. +.|..+-++..++...++-++...+..
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~-------~~l~~eE~~~~~~~n~~~~~l~~~~~e 114 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL-------EELDEEEEEYWREYNELQLELIEFQEE 114 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677766666667777778888777777766655554443 344444444445555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC----------------------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 001269 666 FRELQERKMELHQAIVNMERGG----------------------SADGLLQVRADRIQSDLEELLKALTERCKKHGIDVK 723 (1111)
Q Consensus 666 LqdiQ~EL~ELeqeLqklk~g~----------------------~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk~k 723 (1111)
+..++.++.-+..+|.++++-. .--...++.-++||+-+.++.-.|.-.++++|+++.
T Consensus 115 ~~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~ 194 (314)
T PF04111_consen 115 RDSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQ 194 (314)
T ss_dssp HHHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---S
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 6677777777777777666421 112346789999999999999999999999998865
Q ss_pred cceeeecCCCcCCCcc
Q 001269 724 SHAVIELPFGWQPGIQ 739 (1111)
Q Consensus 724 ~~~~ielp~gw~~~~~ 739 (1111)
- -.=+|.|=.--|.
T Consensus 195 ~--y~l~P~Gs~S~I~ 208 (314)
T PF04111_consen 195 R--YRLVPMGSFSKIE 208 (314)
T ss_dssp S--EEEE--GGG-EEE
T ss_pred c--ceeEecCCCCEEE
Confidence 4 3334666443343
No 156
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=96.13 E-value=0.016 Score=60.25 Aligned_cols=64 Identities=22% Similarity=0.336 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q 001269 405 DIQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALY 468 (1111)
Q Consensus 405 Dk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kS--gLP~edL~qIW~LaDiDnDG~LdkdEF~IAMh 468 (1111)
-+......|.-+|-|++|+|+...++.+.... +|..++|..+..-+|.|+||.|+.+||+-.|.
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 34556677888888999999999999888876 69999999999999999999999999987664
No 157
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.13 E-value=0.1 Score=63.73 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 001269 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
+..+.++..++.+++.+..+++ ..-..|+....++...|.+++..|.+
T Consensus 382 ~e~leel~e~leeie~eq~ei~---e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 382 QEELEEILKQLEEIEKEQEKLS---EMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444 33333334444444444444444444
No 158
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=96.12 E-value=0.21 Score=58.45 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 634 DRREAETLGKKYEEKYKQV-AEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 634 lkreLqsLR~eyEee~KqV-~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
++.+++.|+.++.++.+.+ ..++..+..+...++.++.++.++++++.++.
T Consensus 287 l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~ 338 (444)
T TIGR03017 287 AQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELN 338 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433322 22333333334444444444444444444333
No 159
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.09 E-value=0.23 Score=58.65 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001269 697 ADRIQSDLEELLKALTE 713 (1111)
Q Consensus 697 ~~~in~el~eL~kqL~E 713 (1111)
+.....+|++|+.||++
T Consensus 430 ~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 430 LGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344445555555544
No 160
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.08 E-value=0.21 Score=66.47 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q 001269 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1111)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1111)
|..|..+.+++.+|..+|.+++ .+-..|+.++...+.+++++..+.
T Consensus 887 e~~L~el~~el~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1311)
T TIGR00606 887 EEQLVELSTEVQSLIREIKDAK---EQDSPLETFLEKDQQEKEELISSK 932 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHH
Confidence 4444444444555555444444 444445455544444444444333
No 161
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=96.08 E-value=0.24 Score=55.33 Aligned_cols=124 Identities=13% Similarity=0.181 Sum_probs=74.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001269 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASK-LTIED 663 (1111)
Q Consensus 585 LtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQ-LavlE 663 (1111)
..++++.|+.|++....++...+.++.-|..||. ++ .---.-+|+.+.|+|+.|+...+.+..++.++-.. ++.++
T Consensus 79 ~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD-~E--YPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~ 155 (258)
T PF15397_consen 79 EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD-HE--YPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLS 155 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888888888888887 32 33333478899999999998888888887666554 34444
Q ss_pred HHHHHHHHHHHH-HHHHHH-----HHhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q 001269 664 AKFRELQERKME-LHQAIV-----NMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1111)
Q Consensus 664 a~LqdiQ~EL~E-LeqeLq-----klk~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1111)
...+.++.++.. +-..++ .+.+-..+|..++..|.....++++|+..+
T Consensus 156 ~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I 209 (258)
T PF15397_consen 156 RKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEI 209 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333322 111111 011111345555555555555555555444
No 162
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.07 E-value=0.21 Score=57.31 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=66.9
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHH
Q 001269 622 NRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT---------------------------------IEDAKFRE 668 (1111)
Q Consensus 622 qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLa---------------------------------vlEa~Lqd 668 (1111)
+.|.+.+++...+..+|..|++++.+-..|++-|..+++ .+|..|+.
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777888888888888888777777766542 22222322
Q ss_pred HHHHHHH--------------HHHHHHHHhhcC-----------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001269 669 LQERKME--------------LHQAIVNMERGG-----------SADGLLQVRADRIQSDLEELLKALTERCKKHGID 721 (1111)
Q Consensus 669 iQ~EL~E--------------LeqeLqklk~g~-----------~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk 721 (1111)
.-.|+++ |..||..+=.|. .||..|+||+.+++.|++-++..+.-|...+.-|
T Consensus 152 ~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k 229 (319)
T PF09789_consen 152 LLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERK 229 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222222 233333222221 5788999999999999999999999999888743
No 163
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=96.03 E-value=0.11 Score=64.83 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=79.6
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL 659 (1111)
Q Consensus 580 qEatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQL 659 (1111)
++...+..++.++..+++.+++.+.....+++.++..+......+. +...+++.++.|...++...+.+..|+++|
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l 250 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG----NYADLRRNIKPLEGLESTIKKKIQALQQEL 250 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----hhhhHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 3455566777777777766666655555555554444443333322 344567777888888888888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 001269 660 TIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLE 705 (1111)
Q Consensus 660 avlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~ 705 (1111)
..++..+.++..+...|+.+++.+. .....++.++...+.++-
T Consensus 251 ~~l~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 251 EELKAELKELNDQVSLLTREVQEAL---KESNTLQSDLESLEENLV 293 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888766 455555555555555444
No 164
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.03 E-value=0.46 Score=51.05 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001269 693 LQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 693 Lqer~~~in~el~eL~kqL~E 713 (1111)
||.|+.+++.+...|+.||-+
T Consensus 121 lk~~~~eL~~~~~~Lq~Ql~~ 141 (193)
T PF14662_consen 121 LKKRSKELATEKATLQRQLCE 141 (193)
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 334444444444444444433
No 165
>PRK01156 chromosome segregation protein; Provisional
Probab=96.03 E-value=0.22 Score=63.53 Aligned_cols=6 Identities=17% Similarity=0.512 Sum_probs=2.8
Q ss_pred CHHHHH
Q 001269 402 KPSDIQ 407 (1111)
Q Consensus 402 SpeDk~ 407 (1111)
+|.+|.
T Consensus 147 ~~~~r~ 152 (895)
T PRK01156 147 DPAQRK 152 (895)
T ss_pred CHHHHH
Confidence 454443
No 166
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.00 E-value=0.031 Score=53.39 Aligned_cols=65 Identities=9% Similarity=0.099 Sum_probs=53.3
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHh-------cCCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q 001269 407 QKYSKVFMEVDTDRDGRITGEQARNLFMS-------WRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1111)
Q Consensus 407 ~~Ye~IF~slDkD~DG~ISG~Ear~~f~k-------SgLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~ 472 (1111)
.-.-.+|.++-.+ .+.|+..|++.++.+ ..-....|++|+...|.|+||.|++.||+..+.-|..
T Consensus 8 ~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 8 EKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 3466789999854 579999999998863 2457899999999999999999999999887775544
No 167
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.99 E-value=0.18 Score=62.40 Aligned_cols=60 Identities=25% Similarity=0.319 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q 001269 649 YKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1111)
Q Consensus 649 ~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1111)
+.|-.+|..||+.++..|-.+.++..+|..+|+.-+ ..+..|++++.+++.+|..|+.+|
T Consensus 159 lsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq---~~~keL~~kl~~l~~~l~~~~e~l 218 (617)
T PF15070_consen 159 LSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQ---HVKKELQKKLGELQEKLHNLKEKL 218 (617)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666666666666544 444455555555555555555554
No 168
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=95.99 E-value=0.78 Score=48.29 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHH
Q 001269 593 EKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQ-VAEIA-SKLTIEDAKFRELQ 670 (1111)
Q Consensus 593 enQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~Kq-V~~LE-sQLavlEa~LqdiQ 670 (1111)
-.++..+-.......++.+++.+.+-+.++++ ++..+.++++.+..+.+..+..+.+ |+.|. .....++.++++.+
T Consensus 14 w~~~~~sls~~~~~~kqve~~~l~~lkqqqd~--itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t 91 (165)
T PF09602_consen 14 WKQWSQSLSLFASFMKQVEQQTLKKLKQQQDW--ITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWT 91 (165)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433444555555555555554443333 5666666667666666555555555 44452 44566677788888
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 671 ERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (1111)
Q Consensus 671 ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~ 716 (1111)
.+++||...|+++-. ..--++=.-+.+++.+++|+.++|-|+++
T Consensus 92 ~k~~El~~~i~el~~--~~~Ks~~~~l~q~~~~~eEtv~~~ieqqk 135 (165)
T PF09602_consen 92 DKLNELSAKIQELLL--SPSKSSFSLLSQISKQYEETVKQLIEQQK 135 (165)
T ss_pred HHHHHHHHHHHHHHc--chHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888888888876551 11113445678888899999888877666
No 169
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.95 E-value=0.15 Score=56.11 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-hccccc
Q 001269 662 EDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK-HGIDVK 723 (1111)
Q Consensus 662 lEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~-lgvk~k 723 (1111)
....|++|.+.++.|+..|.+++ .+....++.|.+...++..|+.++++.-+- +||.--
T Consensus 51 h~eeLrqI~~DIn~lE~iIkqa~---~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~L 110 (230)
T PF10146_consen 51 HVEELRQINQDINTLENIIKQAE---SERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPL 110 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34444445555555555554444 444444455555555666666666663333 676653
No 170
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.95 E-value=0.24 Score=60.06 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 623 RLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 623 eL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1111)
.|..++.++..++..+.+|+.+++.++..+..+..+..........++.+|..++.+|.
T Consensus 296 ~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 296 ELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Confidence 45666666666677777777777777776666666655554444444444444444443
No 171
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.95 E-value=0.59 Score=50.21 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=50.9
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHH---
Q 001269 621 DNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRA--- 697 (1111)
Q Consensus 621 ~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~--- 697 (1111)
+.+|.+++..+..++..-..|-+..-+.-+....|...|..+......++.+...|+..+.+|. .++..||.++
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~---~~~~~Lq~Ql~~~ 142 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA---TEKATLQRQLCEF 142 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH---HhhHHHHHHHHHH
Confidence 4455555555444444444444444444444444444555555555555555555555555665 6777777776
Q ss_pred -----------HHHHHHHHHHHHHHHHHHH
Q 001269 698 -----------DRIQSDLEELLKALTERCK 716 (1111)
Q Consensus 698 -----------~~in~el~eL~kqL~E~~~ 716 (1111)
.+.+..+++|...+.||-.
T Consensus 143 e~l~~~~da~l~e~t~~i~eL~~~ieEy~~ 172 (193)
T PF14662_consen 143 ESLICQRDAILSERTQQIEELKKTIEEYRS 172 (193)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445566666666666543
No 172
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.91 E-value=0.19 Score=59.56 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 692 LLQVRADRIQSDLEELLKALTERCK 716 (1111)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E~~~ 716 (1111)
.++++++.++.++++++.+|.....
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777755433
No 173
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.91 E-value=0.27 Score=61.84 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 610 MQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL 659 (1111)
Q Consensus 610 mQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQL 659 (1111)
++++.++..-.+++.+.+++..+++..+=..|-.||++.+||++.-+..+
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~ 461 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSI 461 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45555555555555666666566555555555556666655555444333
No 174
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.91 E-value=0.25 Score=61.13 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 659 LTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 659 LavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
|...+...+.++.+|.+|+..|..++
T Consensus 190 lq~Eq~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 190 LQSEQHVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444443
No 175
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.89 E-value=0.25 Score=49.51 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=46.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTI 661 (1111)
Q Consensus 582 atdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLav 661 (1111)
...|...|..++.|+ ..++.++..|...|..+.++|-.+..+..++ +.+.+++.+-.+++++|+.+...
T Consensus 18 ve~L~s~lr~~E~E~-------~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 18 VERLQSQLRRLEGEL-------ASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666 7777777888888887777666665443322 22221122222333344444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001269 662 EDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 662 lEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
+=.-|-.+-++..+|+.-|+.+|
T Consensus 87 ~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 87 LLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHhcchHHHHHHHHHHHHHHH
Confidence 33334444444555555554444
No 176
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=95.89 E-value=0.022 Score=67.94 Aligned_cols=77 Identities=22% Similarity=0.444 Sum_probs=67.6
Q ss_pred CCC--CCCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCC-----HHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q 001269 396 VPW--PKMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLP-----REVLKQVWDLSDQDSDSMLSLREFCFALY 468 (1111)
Q Consensus 396 ~dW--p~ISpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSgLP-----~edL~qIW~LaDiDnDG~LdkdEF~IAMh 468 (1111)
.+| +.+|.+|......-|.++| |++|+|+-.++.++|.+.+++ .++++.|..-++.|.+|+++++||+.+++
T Consensus 6 ~~~~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 6 DPWLQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred chhhcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 355 4789999999999999999 999999999999999987654 69999999999999999999999998766
Q ss_pred HHHHH
Q 001269 469 LMERY 473 (1111)
Q Consensus 469 LI~~~ 473 (1111)
=+..+
T Consensus 85 ~l~s~ 89 (627)
T KOG0046|consen 85 NLKSK 89 (627)
T ss_pred hhhhh
Confidence 55443
No 177
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=95.88 E-value=0.11 Score=60.31 Aligned_cols=103 Identities=13% Similarity=0.211 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk 682 (1111)
....+.+|..|....++. |..+..+=.-++..++.|.++|.+....+.+++.+...+.+....+..+|++|.++|.+
T Consensus 236 ~~~~~~~L~kl~~~i~~~---lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~ 312 (359)
T PF10498_consen 236 LPETKSQLDKLQQDISKT---LEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQ 312 (359)
T ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444 44443333335666666777777777777777777655544444444444444444443
Q ss_pred Hhhc-------CCCcc---hHHHHHHHHHHHHHHHH
Q 001269 683 MERG-------GSADG---LLQVRADRIQSDLEELL 708 (1111)
Q Consensus 683 lk~g-------~~~n~---~Lqer~~~in~el~eL~ 708 (1111)
.|+. -+.++ .+|+-|.++..||.+|-
T Consensus 313 vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 313 VKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3321 12222 34555555555555543
No 178
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.88 E-value=0.3 Score=59.24 Aligned_cols=11 Identities=9% Similarity=0.329 Sum_probs=4.4
Q ss_pred hhhHHHHHHHH
Q 001269 586 GKKVDEREKVI 596 (1111)
Q Consensus 586 tkeLAnLenQ~ 596 (1111)
..+|..|..++
T Consensus 224 e~~l~~L~~e~ 234 (522)
T PF05701_consen 224 EEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 179
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.87 E-value=0.17 Score=59.81 Aligned_cols=107 Identities=20% Similarity=0.212 Sum_probs=53.2
Q ss_pred HhhhhhHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCc
Q 001269 619 RCDNRLNEITERALADRREAET-------LGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGG-SAD 690 (1111)
Q Consensus 619 ra~qeL~e~~eq~selkreLqs-------LR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~-~~n 690 (1111)
..+..|.+.+.++..+.-+|+. |.-+|-.+..+...--+|+...+..|..+.+++..|++.--++++.. ...
T Consensus 401 ~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SAL 480 (527)
T PF15066_consen 401 NTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSAL 480 (527)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333454444444444333333 44455555555555555666666666666666555544333333222 233
Q ss_pred chHHHHHHHHHH-------HHHHHHH-HHHHHHHHhccccccceee
Q 001269 691 GLLQVRADRIQS-------DLEELLK-ALTERCKKHGIDVKSHAVI 728 (1111)
Q Consensus 691 ~~Lqer~~~in~-------el~eL~k-qL~E~~~~lgvk~k~~~~i 728 (1111)
..||+.-..... |++.-++ .|.||+++ |.+++.+|
T Consensus 481 dlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkL---Ks~leKLv 523 (527)
T PF15066_consen 481 DLLKREKETREQEFLSLQEEFQKHEKENLEERQKL---KSRLEKLV 523 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHH
Confidence 445544444333 3333332 34678887 77777665
No 180
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.85 E-value=0.24 Score=56.75 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=39.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELV-----LYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEI 655 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~-----~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~L 655 (1111)
|..+|.++|.+++.++.-++++++.++....++. ..+...-.+|..++.++.+++++++++--+.++.+.+-+.-
T Consensus 87 Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~y 166 (319)
T PF09789_consen 87 EVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAY 166 (319)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666555334444333333322221 12233333556666666777777777665655555544444
Q ss_pred HHH
Q 001269 656 ASK 658 (1111)
Q Consensus 656 EsQ 658 (1111)
..+
T Consensus 167 k~K 169 (319)
T PF09789_consen 167 KCK 169 (319)
T ss_pred HHH
Confidence 433
No 181
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.85 E-value=0.18 Score=58.99 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=9.0
Q ss_pred CHHHHHHHHHhhCCCCC
Q 001269 439 PREVLKQVWDLSDQDSD 455 (1111)
Q Consensus 439 P~edL~qIW~LaDiDnD 455 (1111)
+...+++|++-.+...+
T Consensus 78 S~~v~~~Vi~~l~l~~~ 94 (444)
T TIGR03017 78 SDRVAKKVVDKLKLDEN 94 (444)
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 34556666665555443
No 182
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.85 E-value=0.12 Score=54.98 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 601 EKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQA 679 (1111)
Q Consensus 601 ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqe 679 (1111)
+++..+..++++|...-.....+|..+..++..++.++..|..++.++.+.++.|...+..+...++.++.++..|+.+
T Consensus 95 ~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 95 QQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555666666666566666666666666666666666665555555555555555544444444444444444433
No 183
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.81 E-value=0.24 Score=50.91 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL 659 (1111)
Q Consensus 586 tkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQL 659 (1111)
..+-++|+..++..........+..+.+......+..++..+..++..+..+++.|+.+++...+..+.|...|
T Consensus 16 ~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 16 ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333333344444444444334444444444444444444433333333333333333
No 184
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.79 E-value=0.21 Score=63.46 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH
Q 001269 645 YEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLK 709 (1111)
Q Consensus 645 yEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~k 709 (1111)
|-+..-+++-+..+|..++..-+-++++++=|+++|++++.... -.+|...|=+.+++|+.|+.
T Consensus 252 ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse-~~tleseiiqlkqkl~dm~~ 315 (1195)
T KOG4643|consen 252 YKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSE-GATLESEIIQLKQKLDDMRS 315 (1195)
T ss_pred cchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHH
Confidence 33334444445556666666666777777777777777762221 15555555555555444443
No 185
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=95.78 E-value=0.0092 Score=45.47 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=19.6
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHH
Q 001269 442 VLKQVWDLSDQDSDSMLSLREFCFALY 468 (1111)
Q Consensus 442 dL~qIW~LaDiDnDG~LdkdEF~IAMh 468 (1111)
+|.++.+..|.|+||+|+++||+.+|.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 356777777777777777777777764
No 186
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.73 E-value=0.013 Score=44.51 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=20.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 001269 8 QFESFFRRADLDGDGRISGAEAVAFFQG 35 (1111)
Q Consensus 8 ~Y~~iF~~lD~DgDGkISg~Ea~~ff~~ 35 (1111)
.|+.+|+.+|.|+||+|+..|++.+|.+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3677788888888888888888877773
No 187
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.73 E-value=0.31 Score=54.06 Aligned_cols=47 Identities=9% Similarity=-0.008 Sum_probs=30.0
Q ss_pred HHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 616 YKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1111)
Q Consensus 616 yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavl 662 (1111)
-|.+.+..-.+.-.+++.+++++..+++-+|+..|-|.+||+.-.++
T Consensus 78 ~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 78 NKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34444444444446666777777777777777777777777664333
No 188
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.72 E-value=0.2 Score=64.10 Aligned_cols=106 Identities=11% Similarity=0.234 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1111)
Q Consensus 604 a~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1111)
+.|..|+.+|+. +++ ++.++...+.-++..|+.++.++++...++...+..|.-.|+.+..++-++.+++..|+..
T Consensus 662 ~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~ 737 (1141)
T KOG0018|consen 662 ERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNR 737 (1141)
T ss_pred HHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 556677777777 443 6777777777778888888877777777777777777777777777777777777777766
Q ss_pred hhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 001269 684 ERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDV 722 (1111)
Q Consensus 684 k~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk~ 722 (1111)
+ ..-..|++|++.+...+ ..+.|...||+.
T Consensus 738 e---~~~~~L~~~~n~ved~i------f~~f~~~igv~i 767 (1141)
T KOG0018|consen 738 E---GEMKELEERMNKVEDRI------FKGFCRRIGVRI 767 (1141)
T ss_pred H---HHHHHHHHHHHHHHHHH------HHHhhhhcCeee
Confidence 5 44445555555554332 244555555543
No 189
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.71 E-value=0.27 Score=58.89 Aligned_cols=124 Identities=20% Similarity=0.234 Sum_probs=79.2
Q ss_pred hhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 585 AGKKVDEREKVILDSREKIE-------FYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIAS 657 (1111)
Q Consensus 585 LtkeLAnLenQ~ed~~ekea-------~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEs 657 (1111)
|..+|..++.+++.++.+.. .|..|-+++ | +-|.++|+.++.++..+..+|+.+.++.-.++..+..|.+
T Consensus 164 L~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~--y-~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLls 240 (596)
T KOG4360|consen 164 LQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQL--Y-GDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLS 240 (596)
T ss_pred HHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555433 333333332 2 5677889999888888888888888888888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCcchHHHHHHHHHHHHHHHHHHH
Q 001269 658 KLTIEDAKFRELQERKMELHQAIVNMERGG----SADGLLQVRADRIQSDLEELLKAL 711 (1111)
Q Consensus 658 QLavlEa~LqdiQ~EL~ELeqeLqklk~g~----~~n~~Lqer~~~in~el~eL~kqL 711 (1111)
+|.++...++-+.-|+++|.+=|+..++.. .|...|+++..+.-.++.|-+..|
T Consensus 241 ql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeEL 298 (596)
T KOG4360|consen 241 QLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEEL 298 (596)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888888888888887777665221 233344444444444444444444
No 190
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=95.71 E-value=0.3 Score=56.86 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVA----EIASKLTIEDAKFRELQERKMELHQ 678 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~----~LEsQLavlEa~LqdiQ~EL~ELeq 678 (1111)
..-.|.-++++..++..+...+.+++.+.. .|..++...+..+. -|.+||.-+-..|+.++.+|.+++.
T Consensus 215 ~kDWR~hleqm~~~~~~I~~~~~~~~~~L~-------kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 215 AKDWRSHLEQMKQHKKSIESALPETKSQLD-------KLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 467788889998888888766666554433 34433333334443 3444555566668888888888888
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 679 AIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKH 718 (1111)
Q Consensus 679 eLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~l 718 (1111)
+..++. .....+...+.+|..+|++++.++.|+...|
T Consensus 288 ~y~~~s---~~V~~~t~~L~~IseeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 288 KYKQAS---EGVSERTRELAEISEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 888877 6667777888888888888888888875543
No 191
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.69 E-value=0.013 Score=44.48 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=22.6
Q ss_pred HHHHHHHhhCCCCCCccCHHHHHHHHHh
Q 001269 408 KYSKVFMEVDTDRDGRITGEQARNLFMS 435 (1111)
Q Consensus 408 ~Ye~IF~slDkD~DG~ISG~Ear~~f~k 435 (1111)
+|+.+|..+|+|++|+|+.+|++.+|.+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 4778888888888888888888888873
No 192
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.67 E-value=0.66 Score=48.50 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C-CcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 641 LGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGG-S-ADGLLQVRADRIQSDLEELLKALTERCK 716 (1111)
Q Consensus 641 LR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~-~-~n~~Lqer~~~in~el~eL~kqL~E~~~ 716 (1111)
+..++.....++...+..+..+...|...+.+...++..+.++++.+ . ....|-.-++....++.+|++.+.+|-.
T Consensus 89 ~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~r 166 (177)
T PF13870_consen 89 LSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELER 166 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444445555555555555555554222 1 3444444466666666666666655433
No 193
>PF15294 Leu_zip: Leucine zipper
Probab=95.67 E-value=0.25 Score=55.68 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=29.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001269 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITE 629 (1111)
Q Consensus 585 LtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~e 629 (1111)
|.+++..|+.|.+.++++...+..+.......|.+.+.+|+++..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666654
No 194
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.66 E-value=0.29 Score=59.40 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=50.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQV 652 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV 652 (1111)
++....+.++-|+..+..++..+.-|++=|.++...+..-.+.|..++.++.+.+-+++.|+++.++=.++|
T Consensus 253 e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 253 EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345566666777766666678888888888888888888888888888777777777775544444433
No 195
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.62 E-value=0.053 Score=60.51 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=12.2
Q ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHH
Q 001269 617 KSRCDNRLNEITERALADRREAETLG 642 (1111)
Q Consensus 617 Ksra~qeL~e~~eq~selkreLqsLR 642 (1111)
....+.+|+++..++..+..+|++|-
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~ 58 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLD 58 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555444444444444444
No 196
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.61 E-value=0.22 Score=62.81 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 650 KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
.....|+.++.++|+.++.++.++..|+.+|.+-+
T Consensus 659 e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er 693 (769)
T PF05911_consen 659 ESYESLETRLKDLEAEAEELQSKISSLEEELEKER 693 (769)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666666555
No 197
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.60 E-value=0.32 Score=61.59 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=53.0
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001269 580 QDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQV 652 (1111)
Q Consensus 580 qEatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV 652 (1111)
++.+-|..++..|+.+|+.....++-.+.+++.++..+++..-+|..++++.-...++|..|.++||+-..++
T Consensus 336 ~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 336 QEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777766666677778888888888888888888888777777888888887765544433
No 198
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.55 E-value=0.16 Score=59.35 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 657 SKLTIEDAKFRELQERKMELHQAI 680 (1111)
Q Consensus 657 sQLavlEa~LqdiQ~EL~ELeqeL 680 (1111)
..++..|..|+++|+|..+|.++.
T Consensus 48 a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 48 AKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 199
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.54 E-value=0.45 Score=61.25 Aligned_cols=104 Identities=12% Similarity=0.115 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 001269 610 MQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE-------DAKFRELQERKMELHQAIVN 682 (1111)
Q Consensus 610 mQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavl-------Ea~LqdiQ~EL~ELeqeLqk 682 (1111)
+.+++.....++..+.+..+++.++.+.++.|+-++-+.-...+.++.-+..+ |..|+.+|..++...+-|++
T Consensus 1600 l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~ 1679 (1758)
T KOG0994|consen 1600 LAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEK 1679 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455566777788888888888888888777666666555544322 33344444444333333332
Q ss_pred HhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 683 MERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (1111)
Q Consensus 683 lk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~ 716 (1111)
-- ..+..-++|+.++..+-.+|.-+-+++-+
T Consensus 1680 r~---~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~ 1710 (1758)
T KOG0994|consen 1680 RM---EGSQAARERAEQLRTEAEKLLGQANEKLD 1710 (1758)
T ss_pred Hh---hcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 34445566666666666666555555433
No 200
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.53 E-value=0.52 Score=58.22 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=18.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRC 620 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra 620 (1111)
|..+|..+|.+|..+++.+...++.++.+++++.....+.
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~ 368 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEK 368 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555444444444444444444433333
No 201
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.51 E-value=0.18 Score=54.43 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1111)
Q Consensus 604 a~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1111)
.+|++|+.+.+.....-. .+|-.++..+..++ ..+...+.++..++..++.+.-+|...+.+|+..
T Consensus 13 sLLKqQLke~q~E~~~K~-------~Eiv~Lr~ql~e~~-------~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~ 78 (202)
T PF06818_consen 13 SLLKQQLKESQAEVNQKD-------SEIVSLRAQLRELR-------AELRNKESQIQELQDSLRTKQLELEVCENELQRK 78 (202)
T ss_pred HHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHH
Confidence 677777776655544332 33334566666666 6666777888888888888999999999999988
Q ss_pred hhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 001269 684 ERGGSADGLLQVRADRIQSDLEELLKALTER 714 (1111)
Q Consensus 684 k~g~~~n~~Lqer~~~in~el~eL~kqL~E~ 714 (1111)
+ .+-..|++.+..+..++.+|...|..-
T Consensus 79 ~---~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 79 K---NEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred h---CHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 8 888899999999999999999998774
No 202
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.49 E-value=0.2 Score=61.13 Aligned_cols=120 Identities=22% Similarity=0.258 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcchH
Q 001269 623 RLNEITERALADRREAETLGKKYEEKYK--------QVAEIASKLTIEDAKFRELQERKMELHQAIVNMER-GGSADGLL 693 (1111)
Q Consensus 623 eL~e~~eq~selkreLqsLR~eyEee~K--------qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~-g~~~n~~L 693 (1111)
+|...+.++-.++++++.|+.++..... +++.+...|.-.+..+..+-..++.+++.+++... -..+-..|
T Consensus 243 eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~l 322 (629)
T KOG0963|consen 243 ELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISAL 322 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555666665544433222 11122222222233333333333333333332220 01233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccceeeecCCCcCCCcccccccch
Q 001269 694 QVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWD 746 (1111)
Q Consensus 694 qer~~~in~el~eL~kqL~E~~~~lgvk~k~~~~ielp~gw~~~~~e~a~~w~ 746 (1111)
...+.....+|++|+++|+.|.--=-||-.|.++-++=||=- |.|-+||
T Consensus 323 e~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ief~~s----e~a~~~~ 371 (629)
T KOG0963|consen 323 EKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIEFGDS----EEANDED 371 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhcCCc----ccccccc
Confidence 556666677888899999888766678999999999888633 5677776
No 203
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.47 E-value=0.15 Score=55.16 Aligned_cols=17 Identities=12% Similarity=0.309 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001269 695 VRADRIQSDLEELLKAL 711 (1111)
Q Consensus 695 er~~~in~el~eL~kqL 711 (1111)
.+++.++++++.++..+
T Consensus 153 ~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 153 KKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 204
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.44 E-value=0.87 Score=57.66 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=26.4
Q ss_pred hhhhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhhhHHH
Q 001269 584 TAGKKVDEREKVILDSREK----------IEFYRSKMQELVLYKSRCDNRLNEI 627 (1111)
Q Consensus 584 dLtkeLAnLenQ~ed~~ek----------ea~lrsQmQEL~~yKsra~qeL~e~ 627 (1111)
+|...|.+|..+++-++.| .+..+=++++|+.+|++..+...++
T Consensus 228 eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~L 281 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADL 281 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666554442 5556667777777777775444443
No 205
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.44 E-value=0.66 Score=61.52 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001269 696 RADRIQSDLEELLKALT 712 (1111)
Q Consensus 696 r~~~in~el~eL~kqL~ 712 (1111)
+|..+..+|.+|++.|.
T Consensus 772 ~I~~l~~~i~~L~~~l~ 788 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELK 788 (1201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555555553
No 206
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.43 E-value=0.48 Score=58.49 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=32.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHH
Q 001269 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYE 646 (1111)
Q Consensus 582 atdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyE 646 (1111)
..+-.++|.+|+.++.++..++..++..++.|.....+. .+++.+.+.+.++|..+|.
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~-------~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQL-------EEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 344567888888888555555555555555555544444 4444444444444444444
No 207
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.42 E-value=0.5 Score=63.87 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 691 GLLQVRADRIQSDLEELLKALTERCKK 717 (1111)
Q Consensus 691 ~~Lqer~~~in~el~eL~kqL~E~~~~ 717 (1111)
..|.+++.++..-...|..++.|.|+.
T Consensus 1356 ~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1356 ANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444
No 208
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.42 E-value=0.39 Score=61.02 Aligned_cols=133 Identities=14% Similarity=0.191 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----
Q 001269 586 GKKVDEREKVILDSRE-------KIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAE---- 654 (1111)
Q Consensus 586 tkeLAnLenQ~ed~~e-------kea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~---- 654 (1111)
+++|.+..++++.+.+ +...|..+++.....-.+..-++.++......++.+.+.|.+++.+..++.-.
T Consensus 229 drEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~ 308 (1200)
T KOG0964|consen 229 DRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELK 308 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3444444444444333 23444444444444444444445555444444444555555555555554433
Q ss_pred ---HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001269 655 ---IASKLT-------IEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGID 721 (1111)
Q Consensus 655 ---LEsQLa-------vlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk 721 (1111)
|+.|++ .+.+.|+.+..++.+-+.+|.+++ -.-..|++..++.+..|..|+.+.++...+-|-.
T Consensus 309 ~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~---Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~ 382 (1200)
T KOG0964|consen 309 IKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIE---PKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRY 382 (1200)
T ss_pred hHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333332 235557777777777788888777 6777788888888888888888887755554433
No 209
>PRK01156 chromosome segregation protein; Provisional
Probab=95.41 E-value=0.48 Score=60.48 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001269 692 LLQVRADRIQSDLEELLKALTERCKKHG 719 (1111)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E~~~~lg 719 (1111)
.|++++..++.++.+|...+.+..+.+|
T Consensus 420 ~l~~~i~~l~~~i~~l~~~~~el~~~~~ 447 (895)
T PRK01156 420 DISSKVSSLNQRIRALRENLDELSRNME 447 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444333
No 210
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.41 E-value=0.5 Score=59.81 Aligned_cols=46 Identities=7% Similarity=0.130 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001269 587 KKVDEREKVILDSREK-----------IEFYRSKMQELVLYKSRCDNRLNEITERAL 632 (1111)
Q Consensus 587 keLAnLenQ~ed~~ek-----------ea~lrsQmQEL~~yKsra~qeL~e~~eq~s 632 (1111)
.++..|..|++....+ -+-|+.=|++|..-+..+++++.++-.+++
T Consensus 24 ~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s 80 (769)
T PF05911_consen 24 AEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKS 80 (769)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 5677777777775443 455677777888888888777777655544
No 211
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.40 E-value=0.76 Score=50.27 Aligned_cols=113 Identities=17% Similarity=0.236 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHH
Q 001269 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTI----------------EDAKFR 667 (1111)
Q Consensus 604 a~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLav----------------lEa~Lq 667 (1111)
..|..++.++...-...+..|.....+...+......++..+.+....+.+|+.+|.. +++.+.
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~ 160 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELA 160 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444554555555555555554432 344444
Q ss_pred HHHHHHHHHHHHHHHHh--h--cCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 668 ELQERKMELHQAIVNME--R--GGSADGLLQVRADRIQSDLEELLKALTERCK 716 (1111)
Q Consensus 668 diQ~EL~ELeqeLqklk--~--g~~~n~~Lqer~~~in~el~eL~kqL~E~~~ 716 (1111)
-++.++..|+.++...- + ....-..++.|+.+++.++..|+..|+++..
T Consensus 161 ~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~ 213 (240)
T PF12795_consen 161 ALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRR 213 (240)
T ss_pred HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444100 0 0012345667777777777777777776544
No 212
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.39 E-value=0.56 Score=53.58 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=8.4
Q ss_pred CCCHHHHHHHHHHH
Q 001269 400 KMKPSDIQKYSKVF 413 (1111)
Q Consensus 400 ~ISpeDk~~Ye~IF 413 (1111)
.+|+.+...+-+.|
T Consensus 34 ~ls~~~~~~~l~y~ 47 (306)
T PF04849_consen 34 ELSPEQIEETLRYF 47 (306)
T ss_pred CCCHHHHHHHHHHH
Confidence 45666666666666
No 213
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.36 E-value=0.57 Score=59.88 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001269 607 RSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERG 686 (1111)
Q Consensus 607 rsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g 686 (1111)
+.++.++..-+.++..+|+.+.+.+..+....+.|+.+..+-.++++.+...|...-..++.+.+++.+.++++.+++
T Consensus 247 ~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~-- 324 (1072)
T KOG0979|consen 247 DREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKK-- 324 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344555555566666677777777666777777777766666777777777777777778888888899999999888
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 687 GSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1111)
Q Consensus 687 ~~~n~~Lqer~~~in~el~eL~kqL~E~~~~ 717 (1111)
.++.+||.++++.+..+..+++-|.+.+..
T Consensus 325 -~~le~lk~~~~~rq~~i~~~~k~i~~~q~e 354 (1072)
T KOG0979|consen 325 -NKLESLKKAAEKRQKRIEKAKKMILDAQAE 354 (1072)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999988776654
No 214
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.35 E-value=0.35 Score=53.20 Aligned_cols=6 Identities=33% Similarity=0.989 Sum_probs=2.9
Q ss_pred hhhccc
Q 001269 749 WDKFED 754 (1111)
Q Consensus 749 wd~~~d 754 (1111)
|..+.+
T Consensus 214 W~~l~~ 219 (251)
T PF11932_consen 214 WQWLPD 219 (251)
T ss_pred CeECCH
Confidence 555444
No 215
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.33 E-value=0.018 Score=42.37 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=18.1
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHH
Q 001269 10 ESFFRRADLDGDGRISGAEAVAFF 33 (1111)
Q Consensus 10 ~~iF~~lD~DgDGkISg~Ea~~ff 33 (1111)
+++|+.+|.|+||+|+..|+.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 567888888888888888877753
No 216
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.33 E-value=0.65 Score=58.93 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDN-------RLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKME 675 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~q-------eL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~E 675 (1111)
+..+.++|+.+...-..+.. .|.....+++-+.-+|..||.++++...++...+.+|..++..+...+.+|.+
T Consensus 303 ~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~ 382 (775)
T PF10174_consen 303 LEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIED 382 (775)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444443333 34444455666677788888888888888888888888877777777777777
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q 001269 676 LHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1111)
Q Consensus 676 LeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1111)
|...+...+ .+...|+.+|+.+...|.+=.++|
T Consensus 383 l~d~~d~~e---~ki~~Lq~kie~Lee~l~ekd~ql 415 (775)
T PF10174_consen 383 LRDMLDKKE---RKINVLQKKIENLEEQLREKDRQL 415 (775)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777655 344444444444444444333333
No 217
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.33 E-value=0.83 Score=54.17 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHh
Q 001269 670 QERKMELHQAIVNME 684 (1111)
Q Consensus 670 Q~EL~ELeqeLqklk 684 (1111)
.+++..|.+.+..+.
T Consensus 160 ~~~i~~l~~~~~~l~ 174 (420)
T COG4942 160 AERIDALKATLKQLA 174 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 218
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=95.29 E-value=0.75 Score=52.58 Aligned_cols=124 Identities=19% Similarity=0.210 Sum_probs=84.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 583 TTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1111)
Q Consensus 583 tdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavl 662 (1111)
.+|.-+|++|+..|-+.-. ..-+|-+.|+.+.-++.-++..+.+++..+..|+.+|.++.++++.+...+..+
T Consensus 80 r~lk~~l~evEekyrkAMv-------~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L 152 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMV-------SNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSL 152 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666676666633111 123566777777777777777777888888888888888888887777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------Hhh------------c-------------CC-CcchHHHHHHHHHHHHHHHH
Q 001269 663 DAKFRELQERKMELHQAIVN--------MER------------G-------------GS-ADGLLQVRADRIQSDLEELL 708 (1111)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqk--------lk~------------g-------------~~-~n~~Lqer~~~in~el~eL~ 708 (1111)
...+..++++|.+..+-|++ ... + .. -+++|-+|+..+-.+-++|.
T Consensus 153 ~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~ 232 (302)
T PF09738_consen 153 REELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELL 232 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHH
Confidence 88888888888877666652 000 0 02 26788888888877777776
Q ss_pred HHHHH
Q 001269 709 KALTE 713 (1111)
Q Consensus 709 kqL~E 713 (1111)
.|++.
T Consensus 233 ~qv~k 237 (302)
T PF09738_consen 233 EQVRK 237 (302)
T ss_pred HHHHH
Confidence 66655
No 219
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.22 E-value=0.6 Score=53.05 Aligned_cols=92 Identities=24% Similarity=0.280 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAK 665 (1111)
Q Consensus 586 tkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~ 665 (1111)
..++.+|..++..++.+...|+.+.++|.++.+.|.++|.. +-.++..||++.++.-.++-++..++..+...
T Consensus 157 ~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k-------~~~~~De~Rkeade~he~~ve~~~~~~e~~ee 229 (294)
T COG1340 157 NEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIK-------LFEEADELRKEADELHEEFVELSKKIDELHEE 229 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34445555555555555555666666666666555444443 44455555555555555555555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001269 666 FRELQERKMELHQAIVNME 684 (1111)
Q Consensus 666 LqdiQ~EL~ELeqeLqklk 684 (1111)
+..++.+|.+|+..|..++
T Consensus 230 ~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 230 FRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666677777766666555
No 220
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=0.021 Score=64.88 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Q 001269 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGS--NLPKQVLAQIWMHADHNHTSYLGRQEFYNALKL 69 (1111)
Q Consensus 6 ~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~S--GLP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~L 69 (1111)
......+|.++|.++||.|+..|++.+++.+ ..-.....+-|...|.+.||.|+.+|+..++.-
T Consensus 76 ~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~ 141 (325)
T KOG4223|consen 76 QERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYG 141 (325)
T ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhh
Confidence 4567889999999999999999999999997 466677788899999999999999999988764
No 221
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.21 E-value=0.57 Score=58.15 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 001269 705 EELLKALTE 713 (1111)
Q Consensus 705 ~eL~kqL~E 713 (1111)
..|++.+++
T Consensus 505 ~~le~~~~~ 513 (650)
T TIGR03185 505 QQLEEEITK 513 (650)
T ss_pred HHHHHHHHH
Confidence 344444444
No 222
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.20 E-value=0.4 Score=60.21 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITE 629 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~e 629 (1111)
.+++.+|+.+|...-..++++|++-+.
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777776666666666666553
No 223
>PRK11519 tyrosine kinase; Provisional
Probab=95.16 E-value=0.47 Score=59.61 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEIT 628 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~ 628 (1111)
.+++++|+++|...-..++.+|++-+
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr 294 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFR 294 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777666666666654
No 224
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=95.13 E-value=0.62 Score=54.57 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001269 694 QVRADRIQSDLEELLKALTERCKKHG 719 (1111)
Q Consensus 694 qer~~~in~el~eL~kqL~E~~~~lg 719 (1111)
++++..+++++.+++.+|.+....+.
T Consensus 226 ~~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 226 EKELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777888888888877665553
No 225
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.08 E-value=0.37 Score=60.57 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 692 LLQVRADRIQSDLEELLKALTERC 715 (1111)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E~~ 715 (1111)
.|+.+++..+.-...|..+.+|-.
T Consensus 374 ~L~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 374 RLSRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445444444433
No 226
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=95.05 E-value=0.48 Score=57.82 Aligned_cols=126 Identities=20% Similarity=0.246 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 588 KVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFR 667 (1111)
Q Consensus 588 eLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~Lq 667 (1111)
+|.+|+.-|+.-++|...-++.+|+-..-.+. +..++-.+-.+|.+|+-+|-..-|+.-+-|.++...|+-++
T Consensus 140 KIrDLE~cie~kr~kLnatEEmLQqellsrts-------LETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~q 212 (861)
T KOG1899|consen 140 KIRDLETCIEEKRNKLNATEEMLQQELLSRTS-------LETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQ 212 (861)
T ss_pred hHHHHHHHHHHHHhhhchHHHHHHHHHHhhhh-------HHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHH
Confidence 44455555555555433333333332222222 22333334444444444443333444444455444444444
Q ss_pred HH-HHHHHHHHHHHH----HHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001269 668 EL-QERKMELHQAIV----NMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGI 720 (1111)
Q Consensus 668 di-Q~EL~ELeqeLq----klk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgv 720 (1111)
.+ |.+..++.+|-. +++.-+.+-+.|||+...-|.|+..|..+|--+.+..|.
T Consensus 213 evn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e 270 (861)
T KOG1899|consen 213 EVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGE 270 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhccc
Confidence 43 233344433322 666667899999999999999999999999888887776
No 227
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=95.03 E-value=0.064 Score=55.76 Aligned_cols=62 Identities=16% Similarity=0.367 Sum_probs=57.2
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHH
Q 001269 407 QKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALY 468 (1111)
Q Consensus 407 ~~Ye~IF~slDkD~DG~ISG~Ear~~f~kS--gLP~edL~qIW~LaDiDnDG~LdkdEF~IAMh 468 (1111)
.-....|..+|.++.|+|..+.+|++|+.. ++..+++..+|+.+=+|..|.|++.+||.+|.
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 456788999999999999999999999976 79999999999999999999999999998774
No 228
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.02 E-value=0.38 Score=60.53 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 586 GKKVDEREKVILD-SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (1111)
Q Consensus 586 tkeLAnLenQ~ed-~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLa 660 (1111)
.+-++-|+++|.. ....-..++.....|...+.++-++|.++.+++..++...+.|+.+|++-.+.-+.|..++.
T Consensus 542 ~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 542 SQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666533 22223445555556666666666666666666666666666666666665555555555543
No 229
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.01 E-value=0.63 Score=45.89 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=50.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcch
Q 001269 613 LVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGL 692 (1111)
Q Consensus 613 L~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~ 692 (1111)
|...+..++++|..+...+...+.....|.++-++=...+..|++|-...+..+.++|.++.++...|...+ ..--.
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK---~ak~~ 83 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK---QAKLE 83 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 333444444444444433333333334443222222234444444455555666666666666666666544 22234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001269 693 LQVRADRIQSDLEELLKALTER 714 (1111)
Q Consensus 693 Lqer~~~in~el~eL~kqL~E~ 714 (1111)
|+.|+...+.+.+.|+-.|.|.
T Consensus 84 l~~r~~k~~~dka~lel~l~e~ 105 (107)
T PF09304_consen 84 LESRLLKAQKDKAILELKLAEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHhh
Confidence 7777777788888888777774
No 230
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=95.00 E-value=0.97 Score=51.52 Aligned_cols=27 Identities=4% Similarity=-0.033 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 653 AEIASKLTIEDAKFRELQERKMELHQA 679 (1111)
Q Consensus 653 ~~LEsQLavlEa~LqdiQ~EL~ELeqe 679 (1111)
++.+.++..++..|+.++.++..++..
T Consensus 155 ~~a~~~~~~a~~~l~~a~~~~~~~~~~ 181 (346)
T PRK10476 155 DQARTAQRDAEVSLNQALLQAQAAAAA 181 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333
No 231
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=94.98 E-value=0.53 Score=51.43 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=12.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 001269 690 DGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 690 n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
...-+.|...+++++.-|..++..
T Consensus 145 ~~l~~a~~~~l~ae~~~l~~~~~~ 168 (240)
T PF12795_consen 145 SPLSEAQRWLLQAELAALEAQIEM 168 (240)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555544
No 232
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.98 E-value=0.18 Score=54.68 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHH
Q 001269 606 YRSKMQELVLYKSRCDNRLNEIT 628 (1111)
Q Consensus 606 lrsQmQEL~~yKsra~qeL~e~~ 628 (1111)
.+.++.+|+.+..+..++|+++.
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 233
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.98 E-value=0.6 Score=57.53 Aligned_cols=26 Identities=8% Similarity=-0.117 Sum_probs=14.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHH
Q 001269 688 SADGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 688 ~~n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
+.++.++.+|+.+++.+.-++..+.+
T Consensus 537 ~~~~~sr~~~~~le~~~~a~qat~d~ 562 (961)
T KOG4673|consen 537 DYYSNSRALAAALEAQALAEQATNDE 562 (961)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 45555555555555555555555555
No 234
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.97 E-value=3.2 Score=44.64 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=62.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCcchHHHHHHH
Q 001269 628 TERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERG--------GSADGLLQVRADR 699 (1111)
Q Consensus 628 ~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g--------~~~n~~Lqer~~~ 699 (1111)
-.++...+..+..|...|++...++..|..+|..++..|.+++.++..|.......+-. +-........+++
T Consensus 90 l~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er 169 (221)
T PF04012_consen 90 LQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFER 169 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHH
Confidence 35666678888888888888888888888888888888888888888877666522210 1124555666666
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001269 700 IQSDLEELLKALTERCKKH 718 (1111)
Q Consensus 700 in~el~eL~kqL~E~~~~l 718 (1111)
+...+.+++-...-+..+.
T Consensus 170 ~e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 170 MEEKIEEMEARAEASAELA 188 (221)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6666666666555544444
No 235
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=94.96 E-value=0.066 Score=54.88 Aligned_cols=74 Identities=16% Similarity=0.319 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCC----CccCHHHHHHHHHHHHHHh
Q 001269 401 MKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSD----SMLSLREFCFALYLMERYR 474 (1111)
Q Consensus 401 ISpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSgLP~edL~qIW~LaDiDnD----G~LdkdEF~IAMhLI~~~~ 474 (1111)
.++++..++++||.-+|+.+||+|++.++-.+|+..|+.....+-.=.|-..+.+ -+|++++|+-.+.-|...+
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 4677889999999999999999999999999999886544433333345555555 7999999987665554443
No 236
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.95 E-value=1.3 Score=50.70 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001269 693 LQVRADRIQSDLEELLKALTER 714 (1111)
Q Consensus 693 Lqer~~~in~el~eL~kqL~E~ 714 (1111)
+.-+|..+..++..|..||...
T Consensus 227 ~~shI~~Lr~EV~RLR~qL~~s 248 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQLAAS 248 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666665443
No 237
>PRK11519 tyrosine kinase; Provisional
Probab=94.95 E-value=0.17 Score=63.37 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 001269 692 LLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E 713 (1111)
.|+..++..+.-.+.|..+++|
T Consensus 374 ~L~Re~~~~~~lY~~lL~r~~e 395 (719)
T PRK11519 374 RLTRDVESGQQVYMQLLNKQQE 395 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555
No 238
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.94 E-value=1 Score=51.17 Aligned_cols=81 Identities=11% Similarity=0.150 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1111)
Q Consensus 604 a~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1111)
..|..|+.+.+.+-...+.+|..++...-+-.--++.+...+.+..-++++|+.-....++.++.--.+-+.|++-|.++
T Consensus 147 e~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Ql 226 (305)
T PF14915_consen 147 EILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQL 226 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443333333334444444444444444444443333333333333333333333333
Q ss_pred h
Q 001269 684 E 684 (1111)
Q Consensus 684 k 684 (1111)
+
T Consensus 227 q 227 (305)
T PF14915_consen 227 Q 227 (305)
T ss_pred H
Confidence 3
No 239
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.91 E-value=0.55 Score=53.36 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=16.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 688 SADGLLQVRADRIQSDLEELLKALTERCKK 717 (1111)
Q Consensus 688 ~~n~~Lqer~~~in~el~eL~kqL~E~~~~ 717 (1111)
.+-..|+..++.+...+.+|..+.++|-..
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~ 194 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEE 194 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666666666665544
No 240
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.90 E-value=0.88 Score=58.77 Aligned_cols=70 Identities=10% Similarity=0.084 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASK 658 (1111)
Q Consensus 589 LAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQ 658 (1111)
.++|+.+-.+.+.+.+.++.+++.++.-...++.-+.+.+.-+....+++...+..+++........|..
T Consensus 1544 a~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~ 1613 (1758)
T KOG0994|consen 1544 AENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKL 1613 (1758)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555666655555554444444444444444444444444333333333334433
No 241
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.89 E-value=1.1 Score=49.65 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001269 693 LQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 693 Lqer~~~in~el~eL~kqL~E 713 (1111)
|++++.+.+..|.+|...|+|
T Consensus 183 i~~~L~~~~~kL~Dl~~~l~e 203 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLLNE 203 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556677777777766655
No 242
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=94.86 E-value=0.012 Score=57.75 Aligned_cols=64 Identities=19% Similarity=0.306 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCccCHHHHHH
Q 001269 402 KPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSWRLPREVLKQVWDLSDQDSDSMLSLREFCF 465 (1111)
Q Consensus 402 SpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kSgLP~edL~qIW~LaDiDnDG~LdkdEF~I 465 (1111)
....+....=.|..+|+|+||+|+..|++.+.....-++.=+....+-+|+|+||.|++.|++.
T Consensus 49 ~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 49 YSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3455666677799999999999999999988765666666689999999999999999999974
No 243
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.85 E-value=1.3 Score=54.30 Aligned_cols=113 Identities=14% Similarity=0.146 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk 682 (1111)
++.++.+++++...-.+. +|.++.+...++...|..|-..++.+++....++..+..+..+|..++.+..+|..++..
T Consensus 254 i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~ 331 (560)
T PF06160_consen 254 IEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELER 331 (560)
T ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444 366666666667777777777777777777778888888888888888888888888887
Q ss_pred HhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 683 MERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1111)
Q Consensus 683 lk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~ 717 (1111)
+++.=.-+..--++++.++.+|..|.+.+...++.
T Consensus 332 v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~ 366 (560)
T PF06160_consen 332 VSQSYTLNHNELEIVRELEKQLKELEKRYEDLEER 366 (560)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77664433333344455555555555555554444
No 244
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.84 E-value=0.34 Score=57.00 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 001269 671 ERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKA 710 (1111)
Q Consensus 671 ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kq 710 (1111)
.+..+|++++..|+ .+|..|+++=.++|..+--|..|
T Consensus 403 aRe~eleqevkrLr---q~nr~l~eqneelngtilTls~q 439 (502)
T KOG0982|consen 403 AREIELEQEVKRLR---QPNRILSEQNEELNGTILTLSTQ 439 (502)
T ss_pred HHHHHHHHHHHHhc---cccchhhhhhhhhhhhhhhHHHH
Confidence 45678999999999 88999998888888776555444
No 245
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.81 E-value=0.99 Score=45.33 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=19.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 629 ERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQE 671 (1111)
Q Consensus 629 eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~ 671 (1111)
.++.+++.+++.|+.+|+.-+.-+.+-.+++..+++.+.|++.
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3333444455555555544444444444444444444444443
No 246
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.79 E-value=2.8 Score=42.77 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=3.3
Q ss_pred hHHHHHHHH
Q 001269 634 DRREAETLG 642 (1111)
Q Consensus 634 lkreLqsLR 642 (1111)
+...++.|+
T Consensus 71 l~~~~~rL~ 79 (151)
T PF11559_consen 71 LQNDVERLK 79 (151)
T ss_pred HHHHHHHHH
Confidence 333333333
No 247
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=94.78 E-value=0.11 Score=54.22 Aligned_cols=61 Identities=11% Similarity=0.229 Sum_probs=56.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHH
Q 001269 8 QFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALK 68 (1111)
Q Consensus 8 ~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SG--LP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~ 68 (1111)
.....|..+|.+++|+|..+.++.+|..-| +..+++.++|+.+=+|..|.+++.+|+-+|.
T Consensus 102 ~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 567789999999999999999999999975 9999999999999999999999999988764
No 248
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=94.78 E-value=0.64 Score=46.73 Aligned_cols=9 Identities=11% Similarity=0.298 Sum_probs=4.4
Q ss_pred hHHHHHHHH
Q 001269 588 KVDEREKVI 596 (1111)
Q Consensus 588 eLAnLenQ~ 596 (1111)
+|..|..++
T Consensus 7 ~l~~l~~~~ 15 (140)
T PRK03947 7 ELEELAAQL 15 (140)
T ss_pred HHHHHHHHH
Confidence 344555555
No 249
>PRK11281 hypothetical protein; Provisional
Probab=94.77 E-value=0.25 Score=64.72 Aligned_cols=81 Identities=11% Similarity=-0.011 Sum_probs=42.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCc-chHHHHHHHHHHHHHHH
Q 001269 633 ADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERG----GSAD-GLLQVRADRIQSDLEEL 707 (1111)
Q Consensus 633 elkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g----~~~n-~~Lqer~~~in~el~eL 707 (1111)
+++..+.++..+.++..++++.++++|..++.....+|+++.+.++.++++++. .... ..-+.+...+++|+.-|
T Consensus 125 qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l 204 (1113)
T PRK11281 125 QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALL 204 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 355555566666666666666666666666554444444444444444433311 1111 12334566666666666
Q ss_pred HHHHHH
Q 001269 708 LKALTE 713 (1111)
Q Consensus 708 ~kqL~E 713 (1111)
+-++.-
T Consensus 205 ~~~~~~ 210 (1113)
T PRK11281 205 NAQNDL 210 (1113)
T ss_pred HHHHHH
Confidence 665533
No 250
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.75 E-value=0.82 Score=57.47 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=14.9
Q ss_pred HHHHHHhccccccceeeecCC
Q 001269 712 TERCKKHGIDVKSHAVIELPF 732 (1111)
Q Consensus 712 ~E~~~~lgvk~k~~~~ielp~ 732 (1111)
.||=+++.+|=-|++-|-+.-
T Consensus 167 ~EReqk~~LrkEL~~~~~~~~ 187 (717)
T PF09730_consen 167 SEREQKNALRKELDQHLNIES 187 (717)
T ss_pred HHHHHHHHHHHHHHHhcCccc
Confidence 567788888877777665544
No 251
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=94.74 E-value=0.74 Score=51.57 Aligned_cols=124 Identities=16% Similarity=0.238 Sum_probs=69.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSREK------------------IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLG 642 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ek------------------ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR 642 (1111)
....|..+|..|+.+|.+..+. |+.|..|+++|... ++++|.++.+.. +..+..|.
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~---qqdEldel~e~~---~~el~~l~ 155 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDS---QQDELDELNEMR---QMELASLS 155 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH---HHHHHHHH
Confidence 3455666666666666664442 66666666665444 444555554332 44555566
Q ss_pred HHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 001269 643 KKYEEKYKQVA-EIASK-LTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 643 ~eyEee~KqV~-~LEsQ-LavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
.+++++.++|- .+-.. +.-....|.+.--+-+.+..+|..-+ .....|++.|..+.+++.+|..+..+
T Consensus 156 ~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~r---e~i~el~e~I~~L~~eV~~L~~~~~~ 225 (258)
T PF15397_consen 156 RKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFR---EEIDELEEEIPQLRAEVEQLQAQAQD 225 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55555555441 12221 11123333333344455555665555 66667778888888888888887764
No 252
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=0.58 Score=58.65 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYE 646 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyE 646 (1111)
++.++.+.++|.....+.+.++.+..++++++++++.-|+.++.
T Consensus 673 ~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 673 IENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444455555555555555555555555666666666665554
No 253
>PRK11281 hypothetical protein; Provisional
Probab=94.69 E-value=0.48 Score=62.16 Aligned_cols=121 Identities=13% Similarity=0.077 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 001269 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE--------DAKFRELQERKME 675 (1111)
Q Consensus 604 a~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavl--------Ea~LqdiQ~EL~E 675 (1111)
..+++++.+++...++.+++|.+.+.+...++...++.+..+.+....+.+|+.+|... ++....+|.|+.-
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~ 203 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQAL 203 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHH
Confidence 34555555566656666666666666666666666666666666666666666665331 3334444555555
Q ss_pred HHHHHHHHhhcC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 001269 676 LHQAIVNMERGG----SADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKS 724 (1111)
Q Consensus 676 LeqeLqklk~g~----~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk~k~ 724 (1111)
|+.++...++-- .-...++.|.+..+.+++.++.+++..+..++-|=.-
T Consensus 204 l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~ 256 (1113)
T PRK11281 204 LNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLT 256 (1113)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444333222 2345667788888999999999888888887764333
No 254
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.86 Score=56.97 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 635 kreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
...++.++++..+..+-++.|+.++...++.|.+++.++.++..+|..+.
T Consensus 551 ~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~ 600 (698)
T KOG0978|consen 551 TQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEK 600 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555555566667777777777777777776555
No 255
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=0.49 Score=59.26 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001269 623 RLNEITERALADRREAETLGKKYEEKY 649 (1111)
Q Consensus 623 eL~e~~eq~selkreLqsLR~eyEee~ 649 (1111)
+|+....+...+.++...|.+++++..
T Consensus 738 el~a~~~e~k~l~~~q~~l~~~L~k~~ 764 (970)
T KOG0946|consen 738 ELNAALSENKKLENDQELLTKELNKKN 764 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444444445555555555553333
No 256
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=94.55 E-value=0.75 Score=46.26 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 001269 695 VRADRIQSDLEELLK 709 (1111)
Q Consensus 695 er~~~in~el~eL~k 709 (1111)
+++++++..+.+|..
T Consensus 122 ~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 122 SRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 257
>PF13514 AAA_27: AAA domain
Probab=94.53 E-value=1.2 Score=58.50 Aligned_cols=89 Identities=20% Similarity=0.236 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Q 001269 634 DRREAETLGKKYEEKYKQVAEIASKLTIE-------------DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRI 700 (1111)
Q Consensus 634 lkreLqsLR~eyEee~KqV~~LEsQLavl-------------Ea~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~i 700 (1111)
..+.+..++.+++...++++.++.+|..+ +..+..++..+.+.++...+.++-..+...++++++++
T Consensus 741 ~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~ 820 (1111)
T PF13514_consen 741 ALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQA 820 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555554333 23444455555444443333332224455666777777
Q ss_pred HHHHHHHHHHHHHHHHHhcccc
Q 001269 701 QSDLEELLKALTERCKKHGIDV 722 (1111)
Q Consensus 701 n~el~eL~kqL~E~~~~lgvk~ 722 (1111)
..++..++.++.+.|...|++.
T Consensus 821 ~~~l~~~~~~l~~L~~~a~~~~ 842 (1111)
T PF13514_consen 821 EEELEELEAELAELLEQAGVED 842 (1111)
T ss_pred HHHHHHHHHHHHHHHHhccCCC
Confidence 7777777777777777777654
No 258
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=1.4 Score=55.11 Aligned_cols=93 Identities=15% Similarity=0.191 Sum_probs=36.8
Q ss_pred HHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHH
Q 001269 616 YKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQV 695 (1111)
Q Consensus 616 yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqe 695 (1111)
+..+.+.++.-++.....+..++..+...++...+.+.++...+..+...+...+.+|.+|+..+.++. .+-..++.
T Consensus 525 ~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~---~ele~~~~ 601 (698)
T KOG0978|consen 525 KIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELE---LELEIEKF 601 (698)
T ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333344444444444333 33334444
Q ss_pred HHHHHHHHHHHHHHHH
Q 001269 696 RADRIQSDLEELLKAL 711 (1111)
Q Consensus 696 r~~~in~el~eL~kqL 711 (1111)
...+++.|+..|...|
T Consensus 602 k~~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 602 KRKRLEEELERLKRKL 617 (698)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 259
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=94.48 E-value=2.2 Score=50.09 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL 659 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQL 659 (1111)
...++....+++.-|.+.+.+|..+..++.+.+++|..|++.+..+..-++-.+..|
T Consensus 246 n~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL 302 (384)
T PF03148_consen 246 NAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRL 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 566788888888888888888888888888888888888877777777666666554
No 260
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.48 E-value=1 Score=59.20 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 001269 691 GLLQVRADRIQSDLEELLKALTER 714 (1111)
Q Consensus 691 ~~Lqer~~~in~el~eL~kqL~E~ 714 (1111)
..++.|+.+++.+++.|+.+++++
T Consensus 211 dl~~~~~~~l~~~~~~Lq~~in~k 234 (1109)
T PRK10929 211 ELAKKRSQQLDAYLQALRNQLNSQ 234 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888888773
No 261
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.47 E-value=1.1 Score=57.58 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001269 695 VRADRIQSDLEELLKALTER 714 (1111)
Q Consensus 695 er~~~in~el~eL~kqL~E~ 714 (1111)
.+++....+++++.+++..+
T Consensus 726 ~~~~~~~~~~~~~~~~~~~~ 745 (908)
T COG0419 726 AELEELKKELEKLEKALELL 745 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333
No 262
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=94.46 E-value=1.6 Score=49.35 Aligned_cols=107 Identities=13% Similarity=0.192 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001269 607 RSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERG 686 (1111)
Q Consensus 607 rsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g 686 (1111)
+..-++|-..=..+++.|.++..++.-+--++.++...|-..+.+....=..|-..|+.|+..+.....|..+|++++.-
T Consensus 81 ~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k 160 (271)
T PF13805_consen 81 KAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYK 160 (271)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhc
Confidence 34455566666667778888888888788888888777777776666666666777777777777777777777776643
Q ss_pred CC---CcchHHHHHHHHHHHHHHHHHHHHH
Q 001269 687 GS---ADGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 687 ~~---~n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
.- .-..|+.++-+..++..-.+.||.+
T Consensus 161 ~P~s~kl~~LeqELvraEae~lvaEAqL~n 190 (271)
T PF13805_consen 161 DPQSPKLVVLEQELVRAEAENLVAEAQLSN 190 (271)
T ss_dssp -TTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 22 2245666666666655555555544
No 263
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.43 E-value=3.6 Score=45.42 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=65.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHhHHHHHHHHHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDN------------RLNEITERALADRREAETLGKKYEEK 648 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~q------------eL~e~~eq~selkreLqsLR~eyEee 648 (1111)
.+.+...+|.+++..+.++...-..+..++.+++.+..+-+. -.++.-+++..++..+..++..|++.
T Consensus 32 ~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~ 111 (225)
T COG1842 32 AIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQA 111 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666443223333333333332222211 22344467777888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 649 YKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (1111)
Q Consensus 649 ~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk 682 (1111)
-.+++.|+.+|..+|..+.+++.++..|.+....
T Consensus 112 ~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 112 EEQVEKLKKQLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888777663
No 264
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.37 E-value=1.3 Score=60.26 Aligned_cols=83 Identities=12% Similarity=0.202 Sum_probs=52.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Q 001269 628 TERALADRREAETLGKKYEEKYKQVAEIASK----LTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSD 703 (1111)
Q Consensus 628 ~eq~selkreLqsLR~eyEee~KqV~~LEsQ----LavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~e 703 (1111)
..+++-+..+..-|..++..+.+.+..++.+ +..++..|.+++..+.+|+..+.-++ ..+..|..+|..++.+
T Consensus 184 ~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~---q~~~eLs~~ie~~~~~ 260 (1822)
T KOG4674|consen 184 EQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLK---QQNEELSKKIESLNLE 260 (1822)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3444444444444555555566666666655 55666667777777777777777666 6666777777777777
Q ss_pred HHHHHHHHHH
Q 001269 704 LEELLKALTE 713 (1111)
Q Consensus 704 l~eL~kqL~E 713 (1111)
|.+|..+...
T Consensus 261 ls~~k~t~~s 270 (1822)
T KOG4674|consen 261 LSKLKDTAES 270 (1822)
T ss_pred HHHHHhhhHH
Confidence 7666666544
No 265
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=94.37 E-value=2.5 Score=44.54 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 691 GLLQVRADRIQSDLEELLKALTERC 715 (1111)
Q Consensus 691 ~~Lqer~~~in~el~eL~kqL~E~~ 715 (1111)
..+...|..+.++|+.++-.+--|+
T Consensus 134 ~ki~~ei~~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 134 NKIDTEIANLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667778888888887777665
No 266
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=94.37 E-value=0.02 Score=56.15 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=44.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhhcCCCCCCcCHHHHHH
Q 001269 8 QFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYN 65 (1111)
Q Consensus 8 ~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SGLP~~~LaqIW~LaD~d~DG~LdrdEF~v 65 (1111)
...=.|..+|.|+||.|+..|++.+...-.-++.-+....+.+|.|+||.|++.|+..
T Consensus 55 ~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 55 VVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4444699999999999999999998776666666789999999999999999999975
No 267
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.36 E-value=1.5 Score=53.33 Aligned_cols=71 Identities=10% Similarity=0.131 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 611 QELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 611 QEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1111)
+++..++.+.++++++-..++.+.+..|..-...++.+.+.++.-+.+|...+..|.+++.+|.++++++.
T Consensus 58 eE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~ 128 (514)
T TIGR03319 58 EEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELE 128 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444444433333333333334444444444444444444444444444444444444
No 268
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=94.35 E-value=0.91 Score=53.63 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhhCC
Q 001269 405 DIQKYSKVFMEVDT 418 (1111)
Q Consensus 405 Dk~~Ye~IF~slDk 418 (1111)
+...|-++-.+.|+
T Consensus 30 nv~eyLkl~~~aDk 43 (395)
T PF10267_consen 30 NVAEYLKLASNADK 43 (395)
T ss_pred hHHHHHHHhhhccH
Confidence 34445555555443
No 269
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.34 E-value=0.087 Score=68.62 Aligned_cols=68 Identities=19% Similarity=0.455 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHhc---------CCCHHHHHHHHHhhCCCCCCccCHHHHHHHH
Q 001269 400 KMKPSDIQKYSKVFMEVDTDRDGRITGEQARNLFMSW---------RLPREVLKQVWDLSDQDSDSMLSLREFCFAL 467 (1111)
Q Consensus 400 ~ISpeDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~kS---------gLP~edL~qIW~LaDiDnDG~LdkdEF~IAM 467 (1111)
-||.+....|.-+|..+|+++.|.|+..+.+.+|+.. |-|...++.|.+++|++.+|++++.+|+.+|
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 3688999999999999999999999999999999864 3355689999999999999999999999887
No 270
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=94.31 E-value=2 Score=46.53 Aligned_cols=146 Identities=18% Similarity=0.141 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHHHH
Q 001269 602 KIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYK---QVAEIASKLTIEDAKF----RELQERKM 674 (1111)
Q Consensus 602 kea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~K---qV~~LEsQLavlEa~L----qdiQ~EL~ 674 (1111)
+++.|+.++++|.. +.-+||+..+ .+=.+.-.|=.||.+-++ +...++..|..+|..| -++..++.
T Consensus 38 ~e~~~~~KY~~lR~---ElI~ELkqsK----klydnYYkL~~KY~~LK~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~ 110 (196)
T PF15272_consen 38 QETSYKEKYQQLRQ---ELINELKQSK----KLYDNYYKLYSKYQELKKSSKQSEDLQSRISNLEKQLVDQMIEKDREIR 110 (196)
T ss_pred hhhHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 46777777777643 2322344333 233444444444444333 3334444444444443 22333444
Q ss_pred HHHHHHHHHhhcCCCcchHH----HHHHHHHHHHHHHHHHHHHHHHHhccccccceeeecCCCcCCCcccccccchhhhh
Q 001269 675 ELHQAIVNMERGGSADGLLQ----VRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWDEDWD 750 (1111)
Q Consensus 675 ELeqeLqklk~g~~~n~~Lq----er~~~in~el~eL~kqL~E~~~~lgvk~k~~~~ielp~gw~~~~~e~a~~w~e~wd 750 (1111)
.|+++|..++ -.+..|+ ......++.|.+|+.+|.++-...+-..-.+. -+.++..+-.++.+ -|-.|.+
T Consensus 111 ~~~~~l~~~~---~r~~el~~~r~~e~~~YesRI~dLE~~L~~~n~~~~~~~~~s~--~~s~~~~~~~~~~~-~~~~d~n 184 (196)
T PF15272_consen 111 TLQDELLSLE---LRNKELQNERERERIAYESRIADLERQLNSRNNSSNDNYVSSN--SYSTSSYSIPYETN-SPLSDYN 184 (196)
T ss_pred HHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc--ccCCCcCCcchhcc-ccccccc
Confidence 4445544443 2222222 22336788999999999965544332222221 23335555556665 5555554
Q ss_pred hccccCCCcc
Q 001269 751 KFEDAGFGNE 760 (1111)
Q Consensus 751 ~~~d~~f~~~ 760 (1111)
.-.|.-|.|+
T Consensus 185 ~s~dt~flkn 194 (196)
T PF15272_consen 185 DSIDTQFLKN 194 (196)
T ss_pred chhhHHHHhc
Confidence 4444444443
No 271
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=94.29 E-value=0.079 Score=62.02 Aligned_cols=65 Identities=22% Similarity=0.378 Sum_probs=58.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHH
Q 001269 7 DQFESFFRRADLDGDGRISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVT 71 (1111)
Q Consensus 7 ~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SG--LP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LVa 71 (1111)
.....+|..+|.+.||+|..+|....|+..| |..+.+++|++.+|.++++.|+.+||-.-|-|.-
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 3556789999999999999999999999985 8999999999999999999999999988877765
No 272
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=94.28 E-value=1.5 Score=52.12 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1111)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~ 717 (1111)
..++.-++.+.+.|+.+++.++........++.++++++.|++-.+.-+..|.+.
T Consensus 341 ~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r 395 (458)
T COG3206 341 PNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQR 395 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555556666666555444556667777777777776666655554443
No 273
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.26 E-value=1.6 Score=56.10 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 610 MQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 610 mQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1111)
.++|....+..++.|..+..++..++.++..|+.++....+++..++++|..+.+.++++-.++..+.....
T Consensus 824 ~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e 895 (1174)
T KOG0933|consen 824 HEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQE 895 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHH
Confidence 334444444444445555555555555555555555555555555555555555555555555544443333
No 274
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.20 E-value=1.7 Score=51.38 Aligned_cols=64 Identities=11% Similarity=0.053 Sum_probs=42.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKK 644 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~e 644 (1111)
...+|+.+|++-+.+++.++.+...++...+-+....+..+.+|++++++...++.+.-+.+.+
T Consensus 14 r~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~ 77 (459)
T KOG0288|consen 14 RLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEAT 77 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888777776666666666666666666667777776666554444444433
No 275
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=94.18 E-value=2.8 Score=50.69 Aligned_cols=53 Identities=8% Similarity=0.038 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 666 FRELQERKMELHQAIVNMERG-GSADGLLQVRADRIQSDLEELLKALTERCKKH 718 (1111)
Q Consensus 666 LqdiQ~EL~ELeqeLqklk~g-~~~n~~Lqer~~~in~el~eL~kqL~E~~~~l 718 (1111)
|+=++++|...+..+.++... ..+...|+++|.++...-..|...-...-+.|
T Consensus 142 l~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~AL 195 (475)
T PRK10361 142 LSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRAL 195 (475)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555544322 23456777777666555555444444444433
No 276
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=94.17 E-value=2.8 Score=39.23 Aligned_cols=38 Identities=8% Similarity=0.226 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 634 DRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQE 671 (1111)
Q Consensus 634 lkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~ 671 (1111)
...-+..|...+......+..++.++..+...|..+..
T Consensus 50 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~ 87 (123)
T PF02050_consen 50 YQRYISALEQAIQQQQQELERLEQEVEQAREELQEARR 87 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556644444444444444444444333333333
No 277
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=94.15 E-value=1.1 Score=50.42 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1111)
Q Consensus 604 a~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1111)
..|+++|+|-+.....- ..+|.+|+-.|.+.|...=| ..+-.||+||+ |+.++.||.+|++-|..+
T Consensus 71 RHLkakLkes~~~l~dR-------etEI~eLksQL~RMrEDWIE--EECHRVEAQLA-----LKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDR-------ETEIDELKSQLARMREDWIE--EECHRVEAQLA-----LKEARKEIKQLKQVIETM 136 (305)
T ss_pred HHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 66777777665544333 33444444445554422111 23456666664 677788999999999988
Q ss_pred hhc-CCCcchHHHHHHHHHHHHHHHHHHHH--HHHHHhcc
Q 001269 684 ERG-GSADGLLQVRADRIQSDLEELLKALT--ERCKKHGI 720 (1111)
Q Consensus 684 k~g-~~~n~~Lqer~~~in~el~eL~kqL~--E~~~~lgv 720 (1111)
+.. .+.|--+|+=--.||.+--+|+.-|+ |.++.-.+
T Consensus 137 rssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElAq~g~~ 176 (305)
T PF15290_consen 137 RSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELAQSGSL 176 (305)
T ss_pred HhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHHHhccc
Confidence 855 35677788888899999999999887 46655443
No 278
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.13 E-value=1.4 Score=54.85 Aligned_cols=82 Identities=23% Similarity=0.321 Sum_probs=58.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHH----HHH
Q 001269 630 RALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQS----DLE 705 (1111)
Q Consensus 630 q~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~----el~ 705 (1111)
+...+....+.|+.++++..+.+++++.||..++.-++....+-..|..+|...+ ..-+..||+|...+.+ .|.
T Consensus 515 E~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ--~~y~~alqekvsevEsrl~E~L~ 592 (739)
T PF07111_consen 515 ERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQ--EVYERALQEKVSEVESRLREQLS 592 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555666677777777788888888888888888888888888888887655 1234567777766554 566
Q ss_pred HHHHHHHH
Q 001269 706 ELLKALTE 713 (1111)
Q Consensus 706 eL~kqL~E 713 (1111)
+|++.|||
T Consensus 593 ~~E~rLNe 600 (739)
T PF07111_consen 593 EMEKRLNE 600 (739)
T ss_pred HHHHHHHH
Confidence 77888877
No 279
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.12 E-value=1.6 Score=54.20 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 637 EAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 637 eLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1111)
.++.|..++++-.++++.++.++..++..+..++.++.+|+.+|.
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444444444443
No 280
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=94.12 E-value=0.34 Score=55.82 Aligned_cols=88 Identities=14% Similarity=0.256 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 001269 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVA-EIASKLTIEDA 664 (1111)
Q Consensus 586 tkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~-~LEsQLavlEa 664 (1111)
.+|..+|++++.++.+.-..|..|++|+..-...|...++.-+.+..++...++.++ +... +-.+.++.+|.
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~-------~~~~~e~~~~i~~L~~ 75 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCK-------KSLSAEERELIEKLEE 75 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCChhHHHHHHHHHH
Confidence 456778888888888887999999999999999995554444433333344444333 2211 22233455555
Q ss_pred HHHHHHHHHHHHHHHH
Q 001269 665 KFRELQERKMELHQAI 680 (1111)
Q Consensus 665 ~LqdiQ~EL~ELeqeL 680 (1111)
.++.++..+.+.++.|
T Consensus 76 ~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 76 DIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHhhHHHHHhhC
Confidence 5666666666666444
No 281
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=94.12 E-value=0.31 Score=58.82 Aligned_cols=100 Identities=11% Similarity=0.153 Sum_probs=44.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTI 661 (1111)
Q Consensus 582 atdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLav 661 (1111)
+.+|+.+|..|+.++.++..+.+.++.++.-|........+.+.. .+......+..|.+-.+-..+++.+|..++..
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKD---SAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc---ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666555555555555555554443322111110 00001123333332223333444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001269 662 EDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 662 lEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
++..+++++.+|.+|+.+|.++.
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555555555555555444
No 282
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=94.08 E-value=0.048 Score=62.36 Aligned_cols=61 Identities=8% Similarity=0.180 Sum_probs=3.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 624 LNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 624 L~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
|+++...+.+.+-+|..|..++......|..|+..|+.+-..+.+.+..|..|+..+..+.
T Consensus 65 L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~ls 125 (326)
T PF04582_consen 65 LQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALS 125 (326)
T ss_dssp -----------------------------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhh
Confidence 3333333333444444444333333344444444444444444444444444444444333
No 283
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.08 E-value=1.8 Score=58.20 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=14.2
Q ss_pred CccCHHHHHHHHHHHHHHh
Q 001269 456 SMLSLREFCFALYLMERYR 474 (1111)
Q Consensus 456 G~LdkdEF~IAMhLI~~~~ 474 (1111)
|.++.+.|.-.|+++.+.+
T Consensus 175 G~~~~~ry~~l~~~l~~lr 193 (1353)
T TIGR02680 175 GFLGEERYAALLDLLIQLR 193 (1353)
T ss_pred CCCChHHHHHHHHHHHHHc
Confidence 6677788888888776653
No 284
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.08 E-value=2.7 Score=50.40 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhcCCCcc----hHHHHHHHH
Q 001269 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAK----------FRELQERKMELHQAIVNMERGGSADG----LLQVRADRI 700 (1111)
Q Consensus 635 kreLqsLR~eyEee~KqV~~LEsQLavlEa~----------LqdiQ~EL~ELeqeLqklk~g~~~n~----~Lqer~~~i 700 (1111)
...++.|..+|+.+-.+++.|+++...+... +...-+|..+|-.+|.++. -+-. .+++|-..+
T Consensus 329 ~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~---~~~~~L~k~V~~~~lea 405 (622)
T COG5185 329 PGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKIN---IQSDKLTKSVKSRKLEA 405 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhc---chHHHHHHHHHhHHHHH
Confidence 3445556666666666666665554444222 3333444555555555444 2222 233444455
Q ss_pred HHHHHHHHHHHHHH---HHHhccc----------cccceeeecCCCcCCCcccccccch
Q 001269 701 QSDLEELLKALTER---CKKHGID----------VKSHAVIELPFGWQPGIQEGAGVWD 746 (1111)
Q Consensus 701 n~el~eL~kqL~E~---~~~lgvk----------~k~~~~ielp~gw~~~~~e~a~~w~ 746 (1111)
+.-+++|++.|+.| .+..++. +-+.+-||.||--.-||-+.-.-..
T Consensus 406 q~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i 464 (622)
T COG5185 406 QGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSI 464 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHH
Confidence 55555555555443 3333333 4466667777776667665544333
No 285
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=94.07 E-value=2.2 Score=40.65 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 587 KKVDEREKVILDSREKIEFYRSKMQELVLY 616 (1111)
Q Consensus 587 keLAnLenQ~ed~~ekea~lrsQmQEL~~y 616 (1111)
..|..|+..+..+...+..+...+..|...
T Consensus 7 ~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~ 36 (127)
T smart00502 7 ELLTKLRKKAAELEDALKQLISIIQEVEEN 36 (127)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333334444444444333
No 286
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.05 E-value=1.5 Score=55.18 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 001269 666 FRELQERKMELHQAIV 681 (1111)
Q Consensus 666 LqdiQ~EL~ELeqeLq 681 (1111)
++.+++++.-|+.+|.
T Consensus 130 i~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 130 IKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 287
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=94.04 E-value=1.3 Score=49.90 Aligned_cols=87 Identities=10% Similarity=0.094 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 001269 634 DRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 634 lkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
++.-|+.++.++++..+++.+|++..+.+|+.+..++.+|...+.-|+.|+ .--..--+..+.+..| |+++...
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq---~vRPAfmdEyEklE~E---L~~lY~~ 240 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ---SVRPAFMDEYEKLEEE---LQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcChHHHHHHHHHHHH---HHHHHHH
Confidence 566667777777777788888888888888888888888888888888777 4444445555555543 4444555
Q ss_pred HHHHhccccccce
Q 001269 714 RCKKHGIDVKSHA 726 (1111)
Q Consensus 714 ~~~~lgvk~k~~~ 726 (1111)
|+.++-.-..|+.
T Consensus 241 Y~~kfRNl~yLe~ 253 (267)
T PF10234_consen 241 YVEKFRNLDYLEH 253 (267)
T ss_pred HHHHHHhHHHHHH
Confidence 6555544444443
No 288
>PF13166 AAA_13: AAA domain
Probab=94.04 E-value=1.2 Score=55.18 Aligned_cols=51 Identities=25% Similarity=0.344 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHH----------HHHHHHhc
Q 001269 666 FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL----------TERCKKHG 719 (1111)
Q Consensus 666 LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL----------~E~~~~lg 719 (1111)
+...+.++.+++.+++.++ .+-..+++.+..++.++.+|+.++ +++++.+|
T Consensus 412 i~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g 472 (712)
T PF13166_consen 412 IEEYQKEIKELEKEINSLE---KKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLG 472 (712)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3334445555555666555 455566677777777766666654 56677776
No 289
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.03 E-value=1.4 Score=54.06 Aligned_cols=140 Identities=19% Similarity=0.187 Sum_probs=79.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001269 584 TAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE- 662 (1111)
Q Consensus 584 dLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavl- 662 (1111)
.+.++|..|+.++..+.+.++.-..-+.+|...-....++|..+.++..++...|+.||+.-..-.+++..++..|...
T Consensus 348 ~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ik 427 (560)
T PF06160_consen 348 ELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIK 427 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777666554333223333333333444444555555555555555555554444445555555544322
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHH---------HHHHHHHh
Q 001269 663 ---------------DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKA---------LTERCKKH 718 (1111)
Q Consensus 663 ---------------Ea~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kq---------L~E~~~~l 718 (1111)
..+|.....++..|..+|.+.. =.-..+...+..+..+++.|... |.|+.-.|
T Consensus 428 R~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~p---inm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQY 504 (560)
T PF06160_consen 428 RRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVP---INMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQY 504 (560)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777788888888887544 33345556666666666666543 47888888
Q ss_pred ccccccce
Q 001269 719 GIDVKSHA 726 (1111)
Q Consensus 719 gvk~k~~~ 726 (1111)
|=|.|.+.
T Consensus 505 aNRYR~~~ 512 (560)
T PF06160_consen 505 ANRYRSDN 512 (560)
T ss_pred HhcccCCC
Confidence 88877654
No 290
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=93.99 E-value=4.7 Score=43.83 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=40.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 629 ERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 629 eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
.++......+..|..+|+.....|+.|+.+|..++..|...+.+...|.+..+..+
T Consensus 92 ~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 92 IEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566777777778887788888888888888888888777776666665443
No 291
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.99 E-value=1.4 Score=52.43 Aligned_cols=9 Identities=0% Similarity=0.051 Sum_probs=3.9
Q ss_pred cchhhhhhc
Q 001269 744 VWDEDWDKF 752 (1111)
Q Consensus 744 ~w~e~wd~~ 752 (1111)
++.++++..
T Consensus 288 ~~~~~l~~~ 296 (457)
T TIGR01000 288 KVKQEITDL 296 (457)
T ss_pred HHHHHHHHH
Confidence 344444444
No 292
>PRK10698 phage shock protein PspA; Provisional
Probab=93.96 E-value=4.9 Score=44.10 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 634 DRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 634 lkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1111)
....+..|+.+|+.....++.|+.+|..++..|.+.+.+...|-+..+
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~ 144 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQ 144 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666666666666666555544444
No 293
>PF15556 Zwint: ZW10 interactor
Probab=93.93 E-value=8.5 Score=42.04 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeeecC
Q 001269 652 VAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELP 731 (1111)
Q Consensus 652 V~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk~k~~~~ielp 731 (1111)
+..|..-.+.........+.||..|+++|..++ .++.+-+..|..-+.=|+=.|.+-|--.-++.+.|+|
T Consensus 136 LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lk----------qQa~qeqdKLQR~qtfLqLl~tLq~k~~~~eae~e~~ 205 (252)
T PF15556_consen 136 LQHLAEVSAEVRERQTGTQQELERLYQELGTLK----------QQAGQEQDKLQRHQTFLQLLYTLQGKLLFPEAEAELP 205 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccccch
Confidence 334444444445555666666666666666555 4455545555555555666777777777777777777
Q ss_pred C
Q 001269 732 F 732 (1111)
Q Consensus 732 ~ 732 (1111)
-
T Consensus 206 ~ 206 (252)
T PF15556_consen 206 Q 206 (252)
T ss_pred h
Confidence 4
No 294
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.90 E-value=2.6 Score=56.88 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 001269 695 VRADRIQSDLEELLKALTERCKKHGIDV 722 (1111)
Q Consensus 695 er~~~in~el~eL~kqL~E~~~~lgvk~ 722 (1111)
.|+.....++++....|..-....|+-.
T Consensus 375 ~r~~~~~~~l~~~~~el~~~a~~~~~~~ 402 (1353)
T TIGR02680 375 GRLDDAERELRAAREQLARAAERAGLSP 402 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444444444444444444445545444
No 295
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=93.89 E-value=0.14 Score=52.52 Aligned_cols=70 Identities=19% Similarity=0.291 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCC--CHHHHHHHHHhhcCCC--CCCcCHHHHHHHHHHHHHH
Q 001269 4 PNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNL--PKQVLAQIWMHADHNH--TSYLGRQEFYNALKLVTVA 73 (1111)
Q Consensus 4 ~~~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SGL--P~~~LaqIW~LaD~d~--DG~LdrdEF~vAM~LValA 73 (1111)
.+...++++|..+|..+||+|++..+..+|+.-|+ .++++.+.....+.+. --.|++++|.-.+.-|+-.
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999874 5577777777776662 2469999998887777654
No 296
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.89 E-value=5.2 Score=41.88 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=46.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHH
Q 001269 629 ERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELL 708 (1111)
Q Consensus 629 eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~ 708 (1111)
+++.+-+.+|..|+..|-..+..+..+..++..+...+..++.+|.+.++.+.+++ +++..+..+.+.+.
T Consensus 56 ~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r----------~~l~~~k~~r~k~~ 125 (177)
T PF13870_consen 56 EKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLR----------EELYRVKKERDKLR 125 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 33334455666666666666666666666666666666666666666655555555 44444445555555
Q ss_pred HHHHHHHHHhccccc
Q 001269 709 KALTERCKKHGIDVK 723 (1111)
Q Consensus 709 kqL~E~~~~lgvk~k 723 (1111)
.++.+.....|+=.+
T Consensus 126 ~~~~~l~~~~~~~~~ 140 (177)
T PF13870_consen 126 KQNKKLRQQGGLLGV 140 (177)
T ss_pred HHHHHHHHhcCCCCC
Confidence 555554444444333
No 297
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.89 E-value=1.5 Score=57.36 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=11.0
Q ss_pred cccCCCCCCCCCcccccc
Q 001269 280 LVPSGNGFASDSVFGGDV 297 (1111)
Q Consensus 280 ~~~~gnG~~s~s~f~~d~ 297 (1111)
.-++-+|+.-=-.||.-+
T Consensus 206 vLld~~GHikLADFGsCl 223 (1317)
T KOG0612|consen 206 VLLDKSGHIKLADFGSCL 223 (1317)
T ss_pred eEecccCcEeeccchhHH
Confidence 455677765555677444
No 298
>PRK12704 phosphodiesterase; Provisional
Probab=93.88 E-value=1.6 Score=53.18 Aligned_cols=71 Identities=8% Similarity=0.135 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 611 QELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 611 QEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1111)
+++..++.+.++++++...++.+.+..|..=...++.+.+.++..+..|...+..|..++.+|.+++.++.
T Consensus 64 eE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~ 134 (520)
T PRK12704 64 EEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELE 134 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333333333333322233333333344444444444444444444444444433
No 299
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=93.84 E-value=0.13 Score=60.40 Aligned_cols=64 Identities=20% Similarity=0.391 Sum_probs=58.1
Q ss_pred HHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 001269 407 QKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1111)
Q Consensus 407 ~~Ye~IF~slDkD~DG~ISG~Ear~~f~kS--gLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI 470 (1111)
.+...+|.++|.++||.|..+|+.+.|... +|..+.+++|.+-+|.++.+.|+++||--.|-|.
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 556789999999999999999999999987 6999999999999999999999999998766553
No 300
>PRK12704 phosphodiesterase; Provisional
Probab=93.83 E-value=2.3 Score=51.98 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 001269 699 RIQSDLEELLKAL 711 (1111)
Q Consensus 699 ~in~el~eL~kqL 711 (1111)
++..+.+.+.++.
T Consensus 166 ~~~~~~~~~~~~~ 178 (520)
T PRK12704 166 EARHEAAVLIKEI 178 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444443333
No 301
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.82 E-value=1.1 Score=58.33 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHhhCCCCC-----CcccHHHHHHHHHhCC-CCHHHH----HHHHHhh-----------cC-------CCC
Q 001269 4 PNQDQFESFFRRADLDGD-----GRISGAEAVAFFQGSN-LPKQVL----AQIWMHA-----------DH-------NHT 55 (1111)
Q Consensus 4 ~~~~~Y~~iF~~lD~DgD-----GkISg~Ea~~ff~~SG-LP~~~L----aqIW~La-----------D~-------d~D 55 (1111)
.+......++-.+--+.. .++-|.++..+|.+.+ ||.+-. ++|.-.. |+ |..
T Consensus 132 ~ns~Wiv~LhyAFQD~~~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~ 211 (1317)
T KOG0612|consen 132 GNSEWIVQLHYAFQDERYLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKS 211 (1317)
T ss_pred CCcHHHHHHHHHhcCccceEEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEeccc
Confidence 344444555554433222 3567888889999988 776421 2222111 21 455
Q ss_pred CCcCHHHHHHHHHHH
Q 001269 56 SYLGRQEFYNALKLV 70 (1111)
Q Consensus 56 G~LdrdEF~vAM~LV 70 (1111)
|+|-...|-.+|+|-
T Consensus 212 GHikLADFGsClkm~ 226 (1317)
T KOG0612|consen 212 GHIKLADFGSCLKMD 226 (1317)
T ss_pred CcEeeccchhHHhcC
Confidence 666666777776664
No 302
>PF13514 AAA_27: AAA domain
Probab=93.81 E-value=1.7 Score=57.29 Aligned_cols=57 Identities=28% Similarity=0.467 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH
Q 001269 652 VAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLK 709 (1111)
Q Consensus 652 V~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~k 709 (1111)
+..++.++..++..+..+..++.+++.+|..+. ++..-..|..++.....+|.++.+
T Consensus 898 l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~-~~~~~a~l~~e~e~~~a~l~~~~~ 954 (1111)
T PF13514_consen 898 LEELEEELEELEEELEELQEERAELEQELEALE-GDDDAAELEQEREEAEAELEELAE 954 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555566666666666666665 222334445555555554444443
No 303
>PRK00106 hypothetical protein; Provisional
Probab=93.80 E-value=2.3 Score=52.09 Aligned_cols=36 Identities=8% Similarity=0.153 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 646 EEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 646 Eee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1111)
+.+.+.++.-+.+|...+..|..++.+|.+++.++.
T Consensus 114 ekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~ 149 (535)
T PRK00106 114 DRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVE 149 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444333
No 304
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.77 E-value=1.6 Score=48.37 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIAS 657 (1111)
Q Consensus 589 LAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEs 657 (1111)
+..++.++..+....+.|..|.......-........++..+...+...|..|...+.+-..++..+..
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 333344443333334555555555555555555555555566666666666666666666666655544
No 305
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.75 E-value=2.2 Score=54.85 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHH--HHHHHHHHHHHHHHHhcccc
Q 001269 672 RKMELHQAIVNMERGGSADGLLQVRADRIQS--DLEELLKALTERCKKHGIDV 722 (1111)
Q Consensus 672 EL~ELeqeLqklk~g~~~n~~Lqer~~~in~--el~eL~kqL~E~~~~lgvk~ 722 (1111)
++.+|++.+-.++ .+|+.|..+|..+-. +-..+-.|.++...++..+.
T Consensus 531 k~eeLe~~l~~lE---~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~el 580 (1195)
T KOG4643|consen 531 KLEELEELLGNLE---EENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNEL 580 (1195)
T ss_pred HHHHHHHHHhhHH---HHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHH
Confidence 3334444444444 566666666665555 44445555566666666544
No 306
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=93.73 E-value=3.1 Score=42.08 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 661 IEDAKFRELQERKMELHQAIVNMERGGSAD--GLLQVRADRIQSDLEELLKALTERCKKH 718 (1111)
Q Consensus 661 vlEa~LqdiQ~EL~ELeqeLqklk~g~~~n--~~Lqer~~~in~el~eL~kqL~E~~~~l 718 (1111)
.+...+...+..+..+.....++....... ..++.++++|+.....|...+.++++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L 209 (213)
T cd00176 150 ELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKL 209 (213)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666554433 6889999999999999999999988775
No 307
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=93.72 E-value=1.3 Score=47.33 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 001269 701 QSDLEELLK 709 (1111)
Q Consensus 701 n~el~eL~k 709 (1111)
+.+++-|++
T Consensus 169 ~~ei~~lk~ 177 (189)
T PF10211_consen 169 QEEIDFLKK 177 (189)
T ss_pred HHHHHHHHH
Confidence 333333333
No 308
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=93.71 E-value=1.7 Score=46.48 Aligned_cols=99 Identities=15% Similarity=0.218 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 604 EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1111)
Q Consensus 604 a~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1111)
..|.+|++-+..-...++.+-+.+.++-..+.++-..-..++..+...++.||..+.-+-++-.-+..+|.+|++-|.+-
T Consensus 74 slLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eE 153 (178)
T PF14073_consen 74 SLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEE 153 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544444433333333322233332222334455556666777666666666667777888888888866
Q ss_pred hhcCCCcchHHHHHHHHHHHHH
Q 001269 684 ERGGSADGLLQVRADRIQSDLE 705 (1111)
Q Consensus 684 k~g~~~n~~Lqer~~~in~el~ 705 (1111)
+ .+--.+|+++.+++..++
T Consensus 154 e---hqRKlvQdkAaqLQt~lE 172 (178)
T PF14073_consen 154 E---HQRKLVQDKAAQLQTGLE 172 (178)
T ss_pred H---HHHHHHHHHHHHHHhhHH
Confidence 6 556678888888887764
No 309
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.67 E-value=1.8 Score=52.53 Aligned_cols=25 Identities=4% Similarity=0.201 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 659 LTIEDAKFRELQERKMELHQAIVNM 683 (1111)
Q Consensus 659 LavlEa~LqdiQ~EL~ELeqeLqkl 683 (1111)
|..+|+.|++++.+|...+.+...+
T Consensus 109 I~eleneLKq~r~el~~~q~E~erl 133 (772)
T KOG0999|consen 109 ILELENELKQLRQELTNVQEENERL 133 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666655555533
No 310
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=93.66 E-value=1.7 Score=52.58 Aligned_cols=121 Identities=9% Similarity=0.148 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEI-ASKLTIEDAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~L-EsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1111)
....+..++.|..-....+..|+++.+++.++..+|+.|..+|+..+.+++.- -..-...+..+...+++|..|-..++
T Consensus 393 ~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ 472 (531)
T PF15450_consen 393 ESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQ 472 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555566666666666666666665555544443211 11111223334455555555555555
Q ss_pred HHhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 001269 682 NMERG--GSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSH 725 (1111)
Q Consensus 682 klk~g--~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk~k~~ 725 (1111)
-++.+ +...+.+|-+++ ...|-.|+.-++.-...+|+|+.-+
T Consensus 473 ~~~e~~~~rkiaeiqg~l~--~~qi~kle~siq~nKtiqn~kfntE 516 (531)
T PF15450_consen 473 LLKEDNPGRKIAEIQGKLA--TNQIMKLENSIQTNKTIQNLKFNTE 516 (531)
T ss_pred HhcCCChhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccchH
Confidence 55422 123334444444 3345566666677667777776543
No 311
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=93.66 E-value=2.7 Score=49.77 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 001269 645 YEEKYKQVAEIASKLTIE--DAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 645 yEee~KqV~~LEsQLavl--Ea~LqdiQ~EL~ELeqeLq 681 (1111)
++....+++.+..+|..+ ...|...+++|.+|+..|.
T Consensus 329 L~~~~~~L~~l~~rL~~lsP~~~L~r~~qrL~~L~~rL~ 367 (438)
T PRK00286 329 LRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLR 367 (438)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444443322 3334444444444444443
No 312
>PRK10869 recombination and repair protein; Provisional
Probab=93.65 E-value=1.5 Score=53.67 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhcc-ccccceeee
Q 001269 702 SDLEELLKALTERCKKHGI-DVKSHAVIE 729 (1111)
Q Consensus 702 ~el~eL~kqL~E~~~~lgv-k~k~~~~ie 729 (1111)
.-..+|++.+.+..+.||+ +++..+.|.
T Consensus 370 ~aA~~l~~~v~~~L~~L~m~~a~f~v~~~ 398 (553)
T PRK10869 370 RYAKELAQLITESMHELSMPHGKFTIDVK 398 (553)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 3457788888888888888 555555553
No 313
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=93.63 E-value=0.1 Score=53.94 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=47.0
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHh---CCCCHHHH----HHHHHhhcCCCCCCcCHHHHHHHH
Q 001269 12 FFRRADLDGDGRISGAEAVAFFQG---SNLPKQVL----AQIWMHADHNHTSYLGRQEFYNAL 67 (1111)
Q Consensus 12 iF~~lD~DgDGkISg~Ea~~ff~~---SGLP~~~L----aqIW~LaD~d~DG~LdrdEF~vAM 67 (1111)
.|+++|-|+|+.|.-.++...+.+ .+|+.++. .+|.+.||.|+||.|++.||-..+
T Consensus 113 AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 113 AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 488999999999999988776654 68998765 467788999999999999997543
No 314
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=93.57 E-value=1.2 Score=51.12 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEIT 628 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~ 628 (1111)
.+++++|++++...-..++.+|.+-+
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr 197 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQ 197 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555544
No 315
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=93.54 E-value=2.3 Score=47.83 Aligned_cols=10 Identities=10% Similarity=0.115 Sum_probs=4.4
Q ss_pred hhHHHHHHHH
Q 001269 587 KKVDEREKVI 596 (1111)
Q Consensus 587 keLAnLenQ~ 596 (1111)
.+|..++.++
T Consensus 80 ~~l~~a~a~l 89 (334)
T TIGR00998 80 LALAKAEANL 89 (334)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 316
>PRK12705 hypothetical protein; Provisional
Probab=93.49 E-value=2.4 Score=51.72 Aligned_cols=66 Identities=8% Similarity=0.106 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 611 QELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMEL 676 (1111)
Q Consensus 611 QEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~EL 676 (1111)
+++..++.++++++++.+.+....++.+......++.+.+.++..+.+|...+..|...+.++.++
T Consensus 59 ~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 59 ELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777766666655555655555566666666666666655555555544444443
No 317
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=93.47 E-value=0.065 Score=39.51 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.1
Q ss_pred HHHHHHhhcCCCCCCcCHHHHHHHH
Q 001269 43 LAQIWMHADHNHTSYLGRQEFYNAL 67 (1111)
Q Consensus 43 LaqIW~LaD~d~DG~LdrdEF~vAM 67 (1111)
|.+++..+|.|+||.|+++||...|
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5678999999999999999998743
No 318
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.44 E-value=2.7 Score=48.31 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 001269 697 ADRIQSDLEELLKAL 711 (1111)
Q Consensus 697 ~~~in~el~eL~kqL 711 (1111)
+.++..+.-+|+.+|
T Consensus 158 le~Lr~EKVdlEn~L 172 (310)
T PF09755_consen 158 LERLRREKVDLENTL 172 (310)
T ss_pred HHHHHHHHHhHHHHH
Confidence 333333433444333
No 319
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=93.44 E-value=4.9 Score=45.04 Aligned_cols=55 Identities=24% Similarity=0.167 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 599 SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (1111)
Q Consensus 599 ~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLa 660 (1111)
.++-++.+.+||.+|......++ .+...++.++..++-+.|.+..|--..+++|.
T Consensus 43 SrE~EaelesqL~q~etrnrdl~-------t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Le 97 (333)
T KOG1853|consen 43 SREIEAELESQLDQLETRNRDLE-------TRNQRLTTEQERNKEKQEDQRVQFYQQESQLE 97 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446777788877776655553 23334455555566555555555544444443
No 320
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=93.44 E-value=3.8 Score=50.21 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001269 694 QVRADRIQSDLEELLKALTERC 715 (1111)
Q Consensus 694 qer~~~in~el~eL~kqL~E~~ 715 (1111)
..++..++..|..|++.+..+.
T Consensus 377 ~~~l~~~~~~~~~le~~~~~~~ 398 (582)
T PF09731_consen 377 LAKLAELNSRLKALEEALDARS 398 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666665554444
No 321
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=3 Score=50.77 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=40.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHHHHHHHHHHhhcCCCcchHH
Q 001269 629 ERALADRREAETLGKKYEEKYKQVAEIASKLTIE-------D-------AKFRELQERKMELHQAIVNMERGGSADGLLQ 694 (1111)
Q Consensus 629 eq~selkreLqsLR~eyEee~KqV~~LEsQLavl-------E-------a~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lq 694 (1111)
.+|.+++.+|+.+|.++.++....+.|++....+ | ..|++.+-+-..|-++..+++ .+|-.||
T Consensus 107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELE---EENIsLQ 183 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELE---EENISLQ 183 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHH
Confidence 3455566666666666666665555555443222 2 223333333444444555666 6777777
Q ss_pred HHHHH---HHHHHHHHHH
Q 001269 695 VRADR---IQSDLEELLK 709 (1111)
Q Consensus 695 er~~~---in~el~eL~k 709 (1111)
+.... .|.+.+.|+-
T Consensus 184 KqVs~LR~sQVEyEglkh 201 (772)
T KOG0999|consen 184 KQVSNLRQSQVEYEGLKH 201 (772)
T ss_pred HHHHHHhhhhhhhhHHHH
Confidence 76443 3445555553
No 322
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.43 E-value=2.1 Score=55.35 Aligned_cols=126 Identities=14% Similarity=0.238 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEIT-------ERALADRREAETLGKKYEEKYKQVAEIASK 658 (1111)
Q Consensus 586 tkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~-------eq~selkreLqsLR~eyEee~KqV~~LEsQ 658 (1111)
.+++..++.++.-+...+.+++.+|+.+...-...+++|..+. .++++++|+|+....+.++-.+.+.++|..
T Consensus 675 ~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 675 RKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555444444444444444 445555555555555555555555555554
Q ss_pred HH-------------HHHHHH-HHHHHHHHHHHHHHHHHhhcC--CCcchHHHHHHHHHHHHHHHHHHH
Q 001269 659 LT-------------IEDAKF-RELQERKMELHQAIVNMERGG--SADGLLQVRADRIQSDLEELLKAL 711 (1111)
Q Consensus 659 La-------------vlEa~L-qdiQ~EL~ELeqeLqklk~g~--~~n~~Lqer~~~in~el~eL~kqL 711 (1111)
|= =.|..+ +..-.++.+++.++++++-.- ..+..++.|+.++...++.+++++
T Consensus 755 if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~ 823 (1141)
T KOG0018|consen 755 IFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEI 823 (1141)
T ss_pred HHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhH
Confidence 30 012222 222334666677776555332 234666777766666666666655
No 323
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=1.7 Score=46.94 Aligned_cols=153 Identities=16% Similarity=0.201 Sum_probs=84.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HH
Q 001269 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIA---SK 658 (1111)
Q Consensus 582 atdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LE---sQ 658 (1111)
...++.+|..|+.|| ..|+.|++.+ |-+.-.+.++.++- .|-.-++.||++..++.+.. .|
T Consensus 28 ~dSve~KIskLDaeL-------~k~~~Qi~k~-----R~gpaq~~~KqrAl----rVLkQKK~yE~q~d~L~~QsfNMeQ 91 (218)
T KOG1655|consen 28 SDSVEKKISKLDAEL-------CKYKDQIKKT-----RPGPAQNALKQRAL----RVLKQKKMYENQKDSLDQQSFNMEQ 91 (218)
T ss_pred hhhHHHHHHHHHHHH-------HHHHHHHHhc-----CCCcchhHHHHHHH----HHHHHHHHHHHHHHHHHHhcccHHH
Confidence 334567788888888 5566655544 44444444442221 11112334665555444322 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccccceeeecCCCcCCC
Q 001269 659 LTIEDAKFRELQERKMELHQAIVNMERGGSADGLL-QVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFGWQPG 737 (1111)
Q Consensus 659 LavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~L-qer~~~in~el~eL~kqL~E~~~~lgvk~k~~~~ielp~gw~~~ 737 (1111)
..-+-.-|++.+.-+..|+....+++.. -..+ =++|+.++.++.+|-.+-.|.++.||--.- +|-
T Consensus 92 a~~t~e~LKdtq~Tv~AmK~~~k~mK~~---ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~------~pe----- 157 (218)
T KOG1655|consen 92 ANFTAESLKDTQATVAAMKDTNKEMKKQ---YKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYN------TPD----- 157 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCC-----
Confidence 3333444666666666666666666511 1111 257888999999999999999999874321 111
Q ss_pred cccccccchhhhhhccccCCC-cccccccc
Q 001269 738 IQEGAGVWDEDWDKFEDAGFG-NEITFDVK 766 (1111)
Q Consensus 738 ~~e~a~~w~e~wd~~~d~~f~-~~~t~~~~ 766 (1111)
| --++-+-+-|.|.+|.|. .+....+.
T Consensus 158 i--de~dL~aELdaL~~E~d~~~~~~~~~~ 185 (218)
T KOG1655|consen 158 I--DEADLDAELDALGQELDMLEEDENYLM 185 (218)
T ss_pred c--CHHHHHHHHHHHHhHhhcccccccccc
Confidence 1 123344456777777776 44444443
No 324
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=93.42 E-value=3 Score=43.18 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=46.6
Q ss_pred hhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 001269 584 TAGKKVDEREKVILDSREK---IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKY-EEKYKQVAEIASKL 659 (1111)
Q Consensus 584 dLtkeLAnLenQ~ed~~ek---ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~ey-Eee~KqV~~LEsQL 659 (1111)
+.++.|++|++.+.++.+. ...|-..+++....+.+..+.-..+-.+.+ ++||+.+ .-..+-+-..+++|
T Consensus 33 ~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s------~~l~~~~~~~~e~~i~~~~~~I 106 (146)
T PF08702_consen 33 DVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYS------KSLRKMIIYILETKIINQPSNI 106 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHH------HHHHHHHHHHHHHHHhhhHhHH
Confidence 3456677777777666554 444445555554444433222212211111 2223222 11224445555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 660 TIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 660 avlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
..|...|+....+++.|+..|..+.
T Consensus 107 ~~Lq~~~~~~~~ki~~Le~~i~~~~ 131 (146)
T PF08702_consen 107 RVLQNILRSNRQKIQRLEQDIDQQE 131 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666665433
No 325
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=93.40 E-value=4.4 Score=45.61 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 001269 695 VRADRIQSDLEELLKALTERCKKHG 719 (1111)
Q Consensus 695 er~~~in~el~eL~kqL~E~~~~lg 719 (1111)
.++...+.++..++.+|......++
T Consensus 179 ~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 179 TDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666777777777766544443
No 326
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=93.39 E-value=5.3 Score=44.04 Aligned_cols=16 Identities=38% Similarity=0.412 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 001269 696 RADRIQSDLEELLKAL 711 (1111)
Q Consensus 696 r~~~in~el~eL~kqL 711 (1111)
|-.+|-.-|.++...|
T Consensus 147 rE~~i~krl~e~~~~l 162 (247)
T PF06705_consen 147 REENILKRLEEEENRL 162 (247)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 327
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.38 E-value=1.8 Score=53.00 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhccc-cccceee
Q 001269 704 LEELLKALTERCKKHGID-VKSHAVI 728 (1111)
Q Consensus 704 l~eL~kqL~E~~~~lgvk-~k~~~~i 728 (1111)
..+|++.+++.++.||++ .+..+.|
T Consensus 377 a~~l~~~v~~~l~~L~m~~~~f~v~~ 402 (563)
T TIGR00634 377 AERLAKRVEQELKALAMEKAEFTVEI 402 (563)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 456777778888888874 3344333
No 328
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=93.38 E-value=3.7 Score=48.32 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 590 DEREKVILDSREK-IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRE 668 (1111)
Q Consensus 590 AnLenQ~ed~~ek-ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~Lqd 668 (1111)
..|+..+..+.++ ...++.|...+..--.+ ++.++..-+.+++-.+..+..++.+..+.+..|+..|..-++.|+=
T Consensus 221 ~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~---Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkv 297 (384)
T PF03148_consen 221 AQLREDIDSILEQTANDLRAQADAVNAALRK---RIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKV 297 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455555553332 55555555554443332 3556666666777777788888888888888888888777777777
Q ss_pred HHHHHHH-----------------HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q 001269 669 LQERKME-----------------LHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALT 712 (1111)
Q Consensus 669 iQ~EL~E-----------------LeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~ 712 (1111)
++++|.. |..|+.+++ ..-..|++++.+....+..|.....
T Consensus 298 aqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~---~~i~~L~~~L~~a~~~l~~L~~~~~ 355 (384)
T PF03148_consen 298 AQTRLENRTQRPNVELCRDPPQYGLIEEVKELR---ESIEALQEKLDEAEASLQKLERTRL 355 (384)
T ss_pred HHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777642 334444444 4444455555555555555544443
No 329
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=93.32 E-value=1.1 Score=46.43 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 001269 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTER 714 (1111)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~ 714 (1111)
...+..++.++.+|+..|..++++... -+ .+.+..+..+...+.+....|
T Consensus 115 ~~~i~~l~~e~~~l~~kL~~l~~~~~~-vs-~ee~~~~~~~~~~~~k~w~kR 164 (169)
T PF07106_consen 115 REEIEELEEEIEELEEKLEKLRSGSKP-VS-PEEKEKLEKEYKKWRKEWKKR 164 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666643222 11 334444444444444444433
No 330
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.31 E-value=3.8 Score=51.12 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHH
Q 001269 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAET 640 (1111)
Q Consensus 586 tkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqs 640 (1111)
..+|..++..|...+.++..+.+|.+.|.......-++|+.++++......+|..
T Consensus 512 ~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~ 566 (786)
T PF05483_consen 512 ALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKC 566 (786)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444544444566666666666666666666666666555444444333
No 331
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.30 E-value=1.6 Score=53.31 Aligned_cols=91 Identities=16% Similarity=0.265 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhcCC
Q 001269 623 RLNEITERALADRREAETLGKKYEEKYK-------QVAEIASKLTIEDA-------KFRELQERKMELHQAIVNMERGGS 688 (1111)
Q Consensus 623 eL~e~~eq~selkreLqsLR~eyEee~K-------qV~~LEsQLavlEa-------~LqdiQ~EL~ELeqeLqklk~g~~ 688 (1111)
+|.++.+++.+...+|+.+..++..... .+++|+++|..++. .+.++...+.+++.+|..+.....
T Consensus 267 ~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~ 346 (563)
T TIGR00634 267 SLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDE 346 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHH
Confidence 3444444444444444444444443332 34566666655544 355666677777777777764444
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHH
Q 001269 689 ADGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 689 ~n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
.-..|++++..+..++.++..+|..
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSL 371 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 332
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.30 E-value=1.9 Score=53.78 Aligned_cols=115 Identities=18% Similarity=0.185 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAET--------------LGKKYEEKYKQVAEIASKLTIEDAKFRE 668 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqs--------------LR~eyEee~KqV~~LEsQLavlEa~Lqd 668 (1111)
.+.|+.++++....+.+..+++.....+++.+-..+.. |..+|+.....+..|..|...--+++.+
T Consensus 49 ~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~e 128 (660)
T KOG4302|consen 49 LEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKE 128 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888877777777777766554433 3333333333333444443333444444
Q ss_pred HHHHHHHHHHHHHHH-----hhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 669 LQERKMELHQAIVNM-----ERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1111)
Q Consensus 669 iQ~EL~ELeqeLqkl-----k~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~ 717 (1111)
++.|++.|-.+|..- .--.++...--+++++++.+|.+|+++-..|.+.
T Consensus 129 l~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlek 182 (660)
T KOG4302|consen 129 LYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEK 182 (660)
T ss_pred HHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444321 0001222222378888888888888777664443
No 333
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.29 E-value=3.2 Score=49.72 Aligned_cols=123 Identities=16% Similarity=0.165 Sum_probs=78.7
Q ss_pred hhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 584 TAGKKVDEREKVILDSREKI---EFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (1111)
Q Consensus 584 dLtkeLAnLenQ~ed~~eke---a~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLa 660 (1111)
.+.+++++|+.+.+.+.+++ .-+..+.+.|...+......++ ....-+..++.|-++-...++.|...|.
T Consensus 268 ~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~n-------k~~~~~~~mk~K~~~~~g~l~kl~~eie 340 (622)
T COG5185 268 IINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSN-------KYENYVNAMKQKSQEWPGKLEKLKSEIE 340 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34555555555554444432 2233344444444433322222 2344455566666666677788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 001269 661 IEDAKFRELQERKMELHQAIVN-------MERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 661 vlEa~LqdiQ~EL~ELeqeLqk-------lk~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
.-|..++.+|++..+|..+|.+ .+.-..|-..|-..++.|+.++++|.+.+-+
T Consensus 341 ~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~ 400 (622)
T COG5185 341 LKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKS 400 (622)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 8899999999999999998873 2222356677888899999999999888743
No 334
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=93.29 E-value=1.6 Score=50.98 Aligned_cols=85 Identities=15% Similarity=0.238 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCcc--h---HHHHHHHHHHHHHHHHHHHHHHH---HHhccccccceee
Q 001269 660 TIEDAKFRELQERKMELHQAIVNMERG---GSADG--L---LQVRADRIQSDLEELLKALTERC---KKHGIDVKSHAVI 728 (1111)
Q Consensus 660 avlEa~LqdiQ~EL~ELeqeLqklk~g---~~~n~--~---Lqer~~~in~el~eL~kqL~E~~---~~lgvk~k~~~~i 728 (1111)
..++..|+.+...|..|+++|+++-|- ..+|. . |..+|+.+--+|-.|.+.---|. +..|+|.|..+++
T Consensus 226 ~~~ks~i~ei~~sl~~l~d~lk~~~q~~~~~~enr~~e~m~l~k~~nslkp~l~~lr~~~d~y~~~l~~~~~~~k~l~~~ 305 (464)
T KOG4637|consen 226 DKLKSRIREIHDSLTRLEDDLKALIQALRSNSENRLCELMELDKAMNSLKPDLIQLRKIRDQYLVWLMIKGVRQKVLNLW 305 (464)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 445677788888888888877753211 12333 2 44455555555555544444433 3344554444432
Q ss_pred ecCCCcCCCcccccccchhhhhhccc
Q 001269 729 ELPFGWQPGIQEGAGVWDEDWDKFED 754 (1111)
Q Consensus 729 elp~gw~~~~~e~a~~w~e~wd~~~d 754 (1111)
- |+ --+|-++|--+..
T Consensus 306 ------l-~~---~~~~t~~qy~l~e 321 (464)
T KOG4637|consen 306 ------L-GM---ENEWTDAQYLLCE 321 (464)
T ss_pred ------H-hh---hhcCCHHHHHHhc
Confidence 1 11 1256677766544
No 335
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=93.28 E-value=0.11 Score=60.35 Aligned_cols=107 Identities=25% Similarity=0.381 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 001269 610 MQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT----IEDAKFRELQERKMELHQAIVNMER 685 (1111)
Q Consensus 610 mQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLa----vlEa~LqdiQ~EL~ELeqeLqklk~ 685 (1111)
++.+.....++..+|+++...+.+++.+|+.|++.+.+...++.++...+. .+...+.++++++.+|+..+.++.
T Consensus 86 ~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~- 164 (370)
T PF02994_consen 86 LEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIE- 164 (370)
T ss_dssp --------------------------------H-------------------------HHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh-
Confidence 333444455555556565555556666676666555454444444433322 223344444444444444444444
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 001269 686 GGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVK 723 (1111)
Q Consensus 686 g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk~k 723 (1111)
+....++.++..+...|++| ..+.+.-+|++.
T Consensus 165 --~~~~~~~k~i~~l~~kl~Dl----EnrsRRnNiRIi 196 (370)
T PF02994_consen 165 --QAIKELEKRIKKLEDKLDDL----ENRSRRNNIRII 196 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH----HHHHTTTEEEEE
T ss_pred --hHHHHHHHHHHHHHHHHHHH----HhhccCCceeEE
Confidence 22222334444444444443 345667777763
No 336
>PF13166 AAA_13: AAA domain
Probab=93.27 E-value=1.5 Score=54.35 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=9.7
Q ss_pred CCCCccCHHHHHHHHHHH
Q 001269 453 DSDSMLSLREFCFALYLM 470 (1111)
Q Consensus 453 DnDG~LdkdEF~IAMhLI 470 (1111)
+..-.++.++..-.+..+
T Consensus 176 ~~~~~~~~~~l~~~~~~l 193 (712)
T PF13166_consen 176 EESSLLSLEELEERIKIL 193 (712)
T ss_pred ccccccCHHHHHHHHHHh
Confidence 445566666665544443
No 337
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=93.27 E-value=4.3 Score=45.54 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccee
Q 001269 652 VAEIASKLTIEDA---KFRELQERKMELHQAIVNMERGG-SADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAV 727 (1111)
Q Consensus 652 V~~LEsQLavlEa---~LqdiQ~EL~ELeqeLqklk~g~-~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk~k~~~~ 727 (1111)
+.+|+-.|++... .|+.-+++|..--++|.+...|- ..--.||+++.....+|+.|++-|.-..++.|=++--...
T Consensus 238 ia~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~~~~a 317 (330)
T KOG2991|consen 238 IAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKDEVDA 317 (330)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3445555555533 35555566555555555444332 4556789999999999999999998888888776554443
Q ss_pred e
Q 001269 728 I 728 (1111)
Q Consensus 728 i 728 (1111)
|
T Consensus 318 ~ 318 (330)
T KOG2991|consen 318 I 318 (330)
T ss_pred c
Confidence 3
No 338
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.27 E-value=7.1 Score=42.71 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=4.0
Q ss_pred HHHHHHHHHHh
Q 001269 610 MQELVLYKSRC 620 (1111)
Q Consensus 610 mQEL~~yKsra 620 (1111)
++.|+.-+..+
T Consensus 71 i~~~~~erdq~ 81 (207)
T PF05010_consen 71 IQKLLKERDQA 81 (207)
T ss_pred HHHHHhhHHHH
Confidence 33333333333
No 339
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=93.23 E-value=3.2 Score=50.58 Aligned_cols=132 Identities=15% Similarity=0.138 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001269 587 KKVDEREKVILDSREK------------IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAE 654 (1111)
Q Consensus 587 keLAnLenQ~ed~~ek------------ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~ 654 (1111)
.+|++|++=|.+..++ ...+++++.++.....+. +|++..+.+..+..+|+.|=.-++.+++....
T Consensus 229 ~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~~L--eld~aeeel~~I~e~ie~lYd~lE~EveA~~~ 306 (570)
T COG4477 229 GQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQL--ELDEAEEELGLIQEKIESLYDLLEREVEAKNV 306 (570)
T ss_pred HHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554442 344444444444444444 36666666666677777777777777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001269 655 IASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGI 720 (1111)
Q Consensus 655 LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgv 720 (1111)
++..+.++-.+|..+++....|.++|..+++.-.-+..=....+.+..+|.+|..++.+....++-
T Consensus 307 V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~ 372 (570)
T COG4477 307 VEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEA 372 (570)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888888888888888888888888888777553333333334455677777777777766655443
No 340
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=93.22 E-value=2.2 Score=41.74 Aligned_cols=34 Identities=6% Similarity=0.126 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001269 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDN 622 (1111)
Q Consensus 589 LAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~q 622 (1111)
+.++-++|..++++...+..+++.|...+.++.-
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~ 38 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEK 38 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455534444445555555555555555543
No 341
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=93.22 E-value=11 Score=39.48 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 635 kreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1111)
+.+|..||++||.+.++++-|-..+.-.|..|+.+.+..++...+-.
T Consensus 83 RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~ 129 (159)
T PF04949_consen 83 RKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKA 129 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777666666665555555555444433
No 342
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=93.20 E-value=1.6 Score=48.45 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=63.6
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 588 KVDEREKVILD-SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKF 666 (1111)
Q Consensus 588 eLAnLenQ~ed-~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~L 666 (1111)
.|.+|=|.+.- +.+++..+..|+.++..+- +.|-+..++|..+-+++..++..+..--..++-|.+|..++|..|
T Consensus 75 ~LeeliNkWs~el~~Qe~vF~~q~~qvNaWD----r~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L 150 (254)
T KOG2196|consen 75 TLEELINKWSLELEEQERVFLQQATQVNAWD----RTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLL 150 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 4566788888888888873 345555566666655555544222222223333344444444444
Q ss_pred HHHHHHHHH------------HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 667 RELQERKME------------LHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (1111)
Q Consensus 667 qdiQ~EL~E------------LeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~ 716 (1111)
-.+++++.. -+++.-++- ..|-.|++++-.+|.++.++|++-++
T Consensus 151 ~~lE~k~~~~~g~~~~~~~D~eR~qty~~a------~nidsqLk~l~~dL~~ii~~lN~~~~ 206 (254)
T KOG2196|consen 151 DPLETKLELQSGHTYLSRADVEREQTYKMA------ENIDSQLKRLSEDLKQIIKSLNTMSK 206 (254)
T ss_pred HHHHHHHhccccchhhhhhhHHHHHHHHHH------HHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 444443333 112222222 45667788888888888888866443
No 343
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=93.17 E-value=3.2 Score=45.07 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Q 001269 649 YKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQ 701 (1111)
Q Consensus 649 ~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in 701 (1111)
..++..|+.++..++..+..++.+|.+|+..|..++ ..-.+|.-|.....
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k---~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR---ARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777776 55555555554433
No 344
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=2.5 Score=42.61 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 652 VAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 652 V~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
++.|+-+|.++|..-+.+++++.+|+++|+++-
T Consensus 79 ~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 79 KETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555443
No 345
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=93.15 E-value=5.3 Score=42.99 Aligned_cols=73 Identities=10% Similarity=0.182 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 611 QELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1111)
Q Consensus 611 QEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1111)
+++..++..++.++++-+.+....++.|..-...++.+...++.-+..|...+..|...+..|.+++.++.++
T Consensus 60 ee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~ 132 (201)
T PF12072_consen 60 EEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEEL 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666655555555455555554444555555555555555555555555444455555544433
No 346
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.04 E-value=3.5 Score=53.28 Aligned_cols=62 Identities=24% Similarity=0.390 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcchHHHHHHHHHHHHHHHHHHHH
Q 001269 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNMER-GGSADGLLQVRADRIQSDLEELLKALT 712 (1111)
Q Consensus 651 qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~-g~~~n~~Lqer~~~in~el~eL~kqL~ 712 (1111)
+.+++.+++..++..+..++.++..|..++..+.. -......|++|...++..+++|+..+.
T Consensus 316 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 378 (908)
T COG0419 316 ELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELE 378 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443311 112333444455545555444444443
No 347
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.04 E-value=2.9 Score=47.97 Aligned_cols=114 Identities=14% Similarity=0.200 Sum_probs=69.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 001269 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT---- 660 (1111)
Q Consensus 585 LtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLa---- 660 (1111)
|.++++++-.+.-....+...++.++.+|...+.....+|+.+. ..+..|+.|..+++...+.+.+--.++.
T Consensus 27 L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~----~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee 102 (309)
T PF09728_consen 27 LCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAI----LAKSKLESLCRELQKQNKKLKEESKRRAREEE 102 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555444433333457777778888888777766666544 3566666666666666665543322221
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 001269 661 --------IEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLE 705 (1111)
Q Consensus 661 --------vlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~ 705 (1111)
-....|.+|+.++.+-...-.++. .+|..|++++..|-.+-+
T Consensus 103 ~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~---~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 103 EKRKELSEKFQATLKDIQAQMEEQSERNIKLR---EENEELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHH---HHHHHHHHHHHHHHHHHH
Confidence 124557777777766666666666 788888888876655544
No 348
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=92.97 E-value=4.4 Score=46.52 Aligned_cols=13 Identities=8% Similarity=0.146 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 001269 669 LQERKMELHQAIV 681 (1111)
Q Consensus 669 iQ~EL~ELeqeLq 681 (1111)
+..++.++..+|.
T Consensus 132 ~t~~la~~t~~L~ 144 (301)
T PF06120_consen 132 ATRKLAEATRELA 144 (301)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 349
>PTZ00464 SNF-7-like protein; Provisional
Probab=92.96 E-value=4.2 Score=44.48 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001269 695 VRADRIQSDLEELLKALTERCKKHGI 720 (1111)
Q Consensus 695 er~~~in~el~eL~kqL~E~~~~lgv 720 (1111)
++++.|..++.|+...-+|....++-
T Consensus 124 d~Vd~l~Dei~E~~e~~~EI~e~Ls~ 149 (211)
T PTZ00464 124 DKVEDLQDELADLYEDTQEIQEIMGR 149 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56788888888888888888888773
No 350
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=92.95 E-value=1 Score=43.37 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKH 718 (1111)
Q Consensus 650 KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~l 718 (1111)
.++-.|-.+...+...+..++.+.+.+..+|.+++..+.+-..|++++..|..++.+|+.++.+....+
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466666667777788889999999999999887778888999999999999999999998866554
No 351
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=1.5 Score=44.11 Aligned_cols=33 Identities=12% Similarity=0.365 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 652 VAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 652 V~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
+++|+.++..+|-.++.++.+-..|+.+|.+++
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555444
No 352
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=92.95 E-value=2.3 Score=47.97 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 001269 666 FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDL 704 (1111)
Q Consensus 666 LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el 704 (1111)
++..|.++..|++++++++ .|+|++..-..-|
T Consensus 392 errkqkeeeklk~e~qkik-------eleek~~eeedal 423 (445)
T KOG2891|consen 392 ERRKQKEEEKLKAEEQKIK-------ELEEKIKEEEDAL 423 (445)
T ss_pred HHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4556666777788888777 4555554433333
No 353
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=92.88 E-value=3.9 Score=45.10 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=3.8
Q ss_pred hhHHHHHHHH
Q 001269 587 KKVDEREKVI 596 (1111)
Q Consensus 587 keLAnLenQ~ 596 (1111)
..|.+++.++
T Consensus 31 Q~ird~~~~l 40 (225)
T COG1842 31 QAIRDMESEL 40 (225)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 354
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.87 E-value=5.4 Score=42.94 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLY 616 (1111)
Q Consensus 585 LtkeLAnLenQ~ed~~ekea~lrsQmQEL~~y 616 (1111)
|+..|.+++.+|.+.+.........-..|...
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~ 59 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERK 59 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655444433333333333333
No 355
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=92.84 E-value=0.86 Score=50.75 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=69.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-------HHHH------------------HHhHHH
Q 001269 583 TTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEI-------TERA------------------LADRRE 637 (1111)
Q Consensus 583 tdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~-------~eq~------------------selkre 637 (1111)
.+|+++|.+|++++++.++=++.|+.-+..++..-... ...++. +.++ ......
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSAS-RSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Confidence 35667777888777776666666666666666431110 001110 0000 112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Q 001269 638 AETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQ 701 (1111)
Q Consensus 638 LqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in 701 (1111)
|--|. +|-+-...++..||+.++..++++..|+.|+.+++ ..|-.|=||++=++
T Consensus 81 LpIVt-------sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~---~DN~kLYEKiRylq 134 (248)
T PF08172_consen 81 LPIVT-------SQRDRFRQRNAELEEELRKQQQTISSLRREVESLR---ADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 33344 78888888999999999999999999999999999 77777777766443
No 356
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=92.82 E-value=2.7 Score=40.63 Aligned_cols=17 Identities=6% Similarity=0.327 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001269 604 EFYRSKMQELVLYKSRC 620 (1111)
Q Consensus 604 a~lrsQmQEL~~yKsra 620 (1111)
..|+.+++.|...++..
T Consensus 9 q~l~~~~~~l~~~~~~l 25 (105)
T cd00632 9 QQLQQQLQAYIVQRQKV 25 (105)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 357
>PRK09343 prefoldin subunit beta; Provisional
Probab=92.79 E-value=2.7 Score=42.03 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 588 KVDEREKVILDSREKIEFYRSKMQELVLYKSRC 620 (1111)
Q Consensus 588 eLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra 620 (1111)
+|.++-++|..+.+++..+..+.+.|...+.++
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~ 40 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELREI 40 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333333344444444444444433
No 358
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.76 E-value=4.7 Score=49.17 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 606 YRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKL 659 (1111)
Q Consensus 606 lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQL 659 (1111)
++....+|..+|.++-|+|.+.++++..++.+...|...||+-...-+.|+..+
T Consensus 586 ~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~ 639 (741)
T KOG4460|consen 586 IQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRM 639 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444455666666666667777766666666666667777766666556666554
No 359
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=92.76 E-value=1.7 Score=56.00 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001269 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNMER-GGSADGLLQVRADRIQSDLEELLKALTERCKKHGI 720 (1111)
Q Consensus 651 qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~-g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgv 720 (1111)
+|+.||+||.++...|-+. =|.++-.+|..|+. --..+..||..+..++..|++++---+|+-|++|-
T Consensus 1161 DIEkLE~qLq~~~~kL~dA--yl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~LrnErIKkHGa 1229 (1439)
T PF12252_consen 1161 DIEKLEKQLQVIHTKLYDA--YLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEFLRNERIKKHGA 1229 (1439)
T ss_pred HHHHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHHHHHHHhhccCC
Confidence 5666666665553322211 12233334444442 12455689999999999999999877889888874
No 360
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.76 E-value=2 Score=52.22 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 606 YRSKMQELVLYKSRCDNRLNEITERALADRR--------------EAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQE 671 (1111)
Q Consensus 606 lrsQmQEL~~yKsra~qeL~e~~eq~selkr--------------eLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~ 671 (1111)
.+..-++|..||.++..-|..-...|..|+. ++..|+.+.+....++..|+.||..++..+++++.
T Consensus 230 ~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~ 309 (511)
T PF09787_consen 230 GESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEA 309 (511)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777775554444444444444444 14556666666666666666666544444444443
Q ss_pred H
Q 001269 672 R 672 (1111)
Q Consensus 672 E 672 (1111)
+
T Consensus 310 ~ 310 (511)
T PF09787_consen 310 Q 310 (511)
T ss_pred H
Confidence 3
No 361
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.75 E-value=2.8 Score=47.34 Aligned_cols=34 Identities=9% Similarity=0.183 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 651 qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
++..-|.||..+|+.|+..+.+|..|+++|..++
T Consensus 89 dlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~K 122 (307)
T PF10481_consen 89 DLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCK 122 (307)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777778888888888888888777777
No 362
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=92.72 E-value=2.7 Score=44.87 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 001269 699 RIQSDLEELLKALTERCKKHGID 721 (1111)
Q Consensus 699 ~in~el~eL~kqL~E~~~~lgvk 721 (1111)
+|..+=+.|+.||-|++..+--|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~ 176 (189)
T TIGR02132 154 QIKTQGEQLQAQLLEKQEALAAK 176 (189)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444333
No 363
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.71 E-value=1.1 Score=53.80 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 001269 582 STTAGKKVDEREKVILDSREK--------------IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEE 647 (1111)
Q Consensus 582 atdLtkeLAnLenQ~ed~~ek--------------ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEe 647 (1111)
+.++++++.+|+..|.++.-| |+.||+|++-|+....+. +++++.|..|-
T Consensus 378 I~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~P-----------nq~k~Rl~~L~----- 441 (508)
T KOG3091|consen 378 IEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAP-----------NQLKARLDELY----- 441 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcCh-----------HHHHHHHHHHH-----
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH---HHHHh
Q 001269 648 KYKQVAEIASKLTIEDAK------FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE---RCKKH 718 (1111)
Q Consensus 648 e~KqV~~LEsQLavlEa~------LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E---~~~~l 718 (1111)
..++..+.++...|.+ +.+.++.|.+-++.|.+|- +-++.++++|+.+|.| .|+.+
T Consensus 442 --e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv-------------~Ilk~d~edi~~~l~E~~~~~~~~ 506 (508)
T KOG3091|consen 442 --EILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQEALTKLV-------------NILKGDQEDIKHQLIEDLEICRKS 506 (508)
T ss_pred --HHHHhhcchhccccceeechhhhHHHHHHHHHHHHHHHHHH-------------HHHHhHHHHHHHHHHhhHHHHhhh
No 364
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.69 E-value=3 Score=52.05 Aligned_cols=125 Identities=16% Similarity=0.175 Sum_probs=70.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----
Q 001269 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIA----- 656 (1111)
Q Consensus 582 atdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LE----- 656 (1111)
++++..++..|.+.+..+-.+-+.|.+|...|...-.+.-+.+..+..+...+.++.+.|..-|+.+-+...+++
T Consensus 379 ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~ 458 (716)
T KOG4593|consen 379 ITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEE 458 (716)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHH
Confidence 345566677777777666666666666655555433333333333333333333333333333333333333333
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH
Q 001269 657 ---------SKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLK 709 (1111)
Q Consensus 657 ---------sQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~k 709 (1111)
..++.+|+++++++.+|.+.++.+..-+ .+...|.+.|.+.-.++..|+.
T Consensus 459 ~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr---~e~~~~~e~i~~~~ke~~~Le~ 517 (716)
T KOG4593|consen 459 LYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQR---EESELLREKIEQYLKELELLEE 517 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhHHHHHHHHHHHHHH
Confidence 3356678888888888888888887666 6666666666666555555544
No 365
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=92.67 E-value=4.3 Score=48.70 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHH
Q 001269 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRA 697 (1111)
Q Consensus 651 qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~ 697 (1111)
-+.+|+.-|+.....|+..+.++.-|+-+|.+++ ..-..||||.
T Consensus 391 ~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k---~nyv~LQEry 434 (527)
T PF15066_consen 391 TLQNLQEALANTQKHLQESRNEKETLQLELKKIK---ANYVHLQERY 434 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh---hhHHHHHHHH
Confidence 3445555555555556666666666666666665 4455555554
No 366
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.65 E-value=4.3 Score=50.13 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHhccccccc
Q 001269 653 AEIASKLTIEDAKFRELQERKMELHQAIVNMER------GGSADGLLQVRADRIQSDLEELL-KALTERCKKHGIDVKSH 725 (1111)
Q Consensus 653 ~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~------g~~~n~~Lqer~~~in~el~eL~-kqL~E~~~~lgvk~k~~ 725 (1111)
..++..+..|+-.|.....+..+|+..|.++++ .|.-- .| ..++.|. ..+.+.+..||+|.==-
T Consensus 477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~-pv--------k~ve~~t~~~Ie~~e~~~gik~GDv 547 (652)
T COG2433 477 RARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGT-PV--------KVVEKLTLEAIEEAEEEYGIKEGDV 547 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc-ce--------ehhhhhhHHHHHhHHHhhccccCcE
Confidence 344445555555555555555555555554440 00000 00 1122222 23455777778777767
Q ss_pred eeeecCCCc
Q 001269 726 AVIELPFGW 734 (1111)
Q Consensus 726 ~~ielp~gw 734 (1111)
+.|+=|.|=
T Consensus 548 i~v~~~sG~ 556 (652)
T COG2433 548 ILVEDPSGG 556 (652)
T ss_pred EEEEcCCCc
Confidence 777777763
No 367
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=92.60 E-value=2.8 Score=49.24 Aligned_cols=142 Identities=14% Similarity=0.207 Sum_probs=70.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001269 582 STTAGKKVDEREKVILDSREK--IEFYRSKMQELVLYKSRCD-----NRLNEITERALADRREAETLGKKYEEKYKQVAE 654 (1111)
Q Consensus 582 atdLtkeLAnLenQ~ed~~ek--ea~lrsQmQEL~~yKsra~-----qeL~e~~eq~selkreLqsLR~eyEee~KqV~~ 654 (1111)
+.++...|.+|...++.++.. ++.++.++.+|+...+..+ .+...+..+.+.++..+..++ +|.+..++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~-~~~~~~~d~~~ 80 (364)
T TIGR00020 2 INEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLE-ELKNSLEDLSE 80 (364)
T ss_pred chHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 344455566666666665543 5566666777765554331 233444445555555555554 34444555544
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhh-------cCCCcchHHHHH----HHHHHHHHHHHHHHHHHHHHhccc
Q 001269 655 IASKLTIE--DAKFRELQERKMELHQAIVNMER-------GGSADGLLQVRA----DRIQSDLEELLKALTERCKKHGID 721 (1111)
Q Consensus 655 LEsQLavl--Ea~LqdiQ~EL~ELeqeLqklk~-------g~~~n~~Lqer~----~~in~el~eL~kqL~E~~~~lgvk 721 (1111)
+.+-+... +.-+..++.++.+|+++|.+++- -...|..|+-++ .+..-=..+|-+-+..||...|++
T Consensus 81 l~el~~~e~D~e~~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~ 160 (364)
T TIGR00020 81 LLELAVEEDDEETFNELDAELKALEKKLAELELRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFK 160 (364)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 44333110 11233455555555555554441 112333333322 112223455666667789888888
Q ss_pred ccc
Q 001269 722 VKS 724 (1111)
Q Consensus 722 ~k~ 724 (1111)
+.+
T Consensus 161 ~ev 163 (364)
T TIGR00020 161 VEI 163 (364)
T ss_pred EEE
Confidence 775
No 368
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.60 E-value=6 Score=48.22 Aligned_cols=68 Identities=16% Similarity=0.231 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhc-C----CC------cchHHHHHHHHH
Q 001269 644 KYEEKYKQVAEIASKLTIEDAKFRELQER-----------KMELHQAIVNMERG-G----SA------DGLLQVRADRIQ 701 (1111)
Q Consensus 644 eyEee~KqV~~LEsQLavlEa~LqdiQ~E-----------L~ELeqeLqklk~g-~----~~------n~~Lqer~~~in 701 (1111)
.|-+.+++..+++.+|..+...++..+.+ |+..+.-|+.|+.+ + +. ...|+...+.++
T Consensus 208 ~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ 287 (511)
T PF09787_consen 208 HYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQ 287 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHH
Confidence 56666667777777665543333322222 33333444556652 1 11 456777777777
Q ss_pred HHHHHHHHHH
Q 001269 702 SDLEELLKAL 711 (1111)
Q Consensus 702 ~el~eL~kqL 711 (1111)
.++..|+.|+
T Consensus 288 ee~~~l~~Qi 297 (511)
T PF09787_consen 288 EEIQLLERQI 297 (511)
T ss_pred HHHHHHHHHH
Confidence 7777777776
No 369
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=92.58 E-value=2.6 Score=55.38 Aligned_cols=27 Identities=0% Similarity=-0.015 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 692 LLQVRADRIQSDLEELLKALTERCKKH 718 (1111)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E~~~~l 718 (1111)
.+.+++..+..++.++...+..|..+.
T Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~~~L~ 883 (1047)
T PRK10246 857 DNRQQQQALMQQIAQATQQVEDWGYLN 883 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666665555554
No 370
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.58 E-value=2.2 Score=47.00 Aligned_cols=46 Identities=30% Similarity=0.363 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 634 DRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQA 679 (1111)
Q Consensus 634 lkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqe 679 (1111)
+++.+..++.|+++.++...+|-..+..+|+.+...|++|..|+-+
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E 178 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVE 178 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555554444444444444433
No 371
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.55 E-value=0.75 Score=50.39 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 624 LNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 624 L~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
|.++..++.++..++.+|..+|++....++.|+-..+-+|..|+.+-.+...|+..+.++.
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 3333334444455555555555555555555555555555555555555555555554444
No 372
>PRK09343 prefoldin subunit beta; Provisional
Probab=92.53 E-value=3.4 Score=41.35 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001269 700 IQSDLEELLKALTERCKKH 718 (1111)
Q Consensus 700 in~el~eL~kqL~E~~~~l 718 (1111)
++..+.+++.+|++..+.+
T Consensus 97 l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 97 LREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3344444444444443333
No 373
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.51 E-value=2.5 Score=51.97 Aligned_cols=37 Identities=8% Similarity=0.196 Sum_probs=27.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 584 TAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRC 620 (1111)
Q Consensus 584 dLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra 620 (1111)
.+.++|..++.+-.+..++.++|+.|++||..-.=+.
T Consensus 168 ~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~ 204 (557)
T COG0497 168 QARRELEDLQEKERERAQRADLLQFQLEELEELNLQP 204 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4567777777777777777899999999998754443
No 374
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.51 E-value=5 Score=49.65 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 659 LTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 659 LavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
|+.+...+.++|.+...|+.++.+..
T Consensus 244 Le~aq~ri~~lE~e~e~L~~ql~~~N 269 (629)
T KOG0963|consen 244 LEDAQQRIVFLEREVEQLREQLAKAN 269 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455566677777777777777544
No 375
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=92.51 E-value=8.9 Score=44.12 Aligned_cols=82 Identities=10% Similarity=0.174 Sum_probs=58.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH
Q 001269 630 RALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLK 709 (1111)
Q Consensus 630 q~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~k 709 (1111)
++..+...-..||..+.-=....++++..|+--...|..-+.++..+.-.+.+++ .+|..++.+.+..|..|-+|..
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklE---KE~~~~k~k~e~~n~~l~~m~e 279 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLE---KENQTWKSKWEKSNKALIEMAE 279 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHH
Confidence 4444444444455444444444555555566666677788888888888999999 9999999999999998888876
Q ss_pred HHHHH
Q 001269 710 ALTER 714 (1111)
Q Consensus 710 qL~E~ 714 (1111)
.-..+
T Consensus 280 er~~~ 284 (309)
T PF09728_consen 280 ERQKL 284 (309)
T ss_pred HHHHH
Confidence 65443
No 376
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.49 E-value=0.11 Score=59.54 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRE 668 (1111)
Q Consensus 589 LAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~Lqd 668 (1111)
++.|...+..+..++..+...++.|.........+|+++...+. .|+..++.-...|..+...|...+..|.+
T Consensus 44 v~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~-------~lq~Sl~~lsssVs~lS~~ls~h~ssIS~ 116 (326)
T PF04582_consen 44 VASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVT-------SLQSSLSSLSSSVSSLSSTLSDHSSSISD 116 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhHHhhhhhhhhhhhhHHH
Confidence 33333333333333344444444444444444444444444444 44444444447777777777777777777
Q ss_pred HHHHHHHHHHHHHHHh
Q 001269 669 LQERKMELHQAIVNME 684 (1111)
Q Consensus 669 iQ~EL~ELeqeLqklk 684 (1111)
+|..++.|.-+|..||
T Consensus 117 Lqs~v~~lsTdvsNLk 132 (326)
T PF04582_consen 117 LQSSVSALSTDVSNLK 132 (326)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhh
Confidence 7777777777777766
No 377
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.47 E-value=0.94 Score=54.34 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=9.3
Q ss_pred ccccchhhhhhcc
Q 001269 741 GAGVWDEDWDKFE 753 (1111)
Q Consensus 741 ~a~~w~e~wd~~~ 753 (1111)
+...|.|.=|...
T Consensus 171 ~~~~Wv~P~D~~~ 183 (472)
T TIGR03752 171 GGVVWVEPQDALP 183 (472)
T ss_pred CceEeeccccccc
Confidence 5567888777664
No 378
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=92.46 E-value=2.8 Score=47.48 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 658 KLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCK 716 (1111)
Q Consensus 658 QLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~ 716 (1111)
++..++..+..++.+++.+++.+..++.+ ..++++...+.++..++.+|...+.
T Consensus 146 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~l~~a~~ 199 (331)
T PRK03598 146 DLENARSSRDQAQATLKSAQDKLSQYREG-----NRPQDIAQAKASLAQAQAALAQAEL 199 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777777777777776632 2345666667777766666655333
No 379
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.40 E-value=7 Score=48.99 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH--HHHHhccccccceeeecCC
Q 001269 691 GLLQVRADRIQSDLEELLKALTE--RCKKHGIDVKSHAVIELPF 732 (1111)
Q Consensus 691 ~~Lqer~~~in~el~eL~kqL~E--~~~~lgvk~k~~~~ielp~ 732 (1111)
+.|++|+++. ..++++..+|.. ..+.++.+++ ++..||++
T Consensus 214 ~~l~e~~~~~-qq~a~~~~ql~~~~ele~i~~~~~-dqlqel~~ 255 (716)
T KOG4593|consen 214 ASLEERADHE-QQNAELEQQLSLSEELEAINKNMK-DQLQELEE 255 (716)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHhhhHHHHHHHHHH-HHHHHHHH
Confidence 4444444432 334555555533 3444444555 56666665
No 380
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.37 E-value=0.038 Score=68.95 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001269 603 IEFYRSKMQELVLYKSRC 620 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra 620 (1111)
++.|++|++++..||.+.
T Consensus 317 ve~YKkKLed~~~lk~qv 334 (713)
T PF05622_consen 317 VEKYKKKLEDLEDLKRQV 334 (713)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566777777777766655
No 381
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=92.32 E-value=0.039 Score=70.35 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001269 584 TAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITER-------ALADRREAETLGKKYEEKYKQVAEIA 656 (1111)
Q Consensus 584 dLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq-------~selkreLqsLR~eyEee~KqV~~LE 656 (1111)
.+..+|..|.++|++.. .+++.|...+.....+|.+++.+ +.++++....|..+.++...++++++
T Consensus 409 ~~~te~~~Lk~~lee~~-------e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E 481 (859)
T PF01576_consen 409 ELETELFKLKNELEELQ-------EQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAE 481 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555554333 33334444444444444444433 33445555556656666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcchHHHHHHHHHHHHHHHHHHH----HHHHHHhccccccceeee
Q 001269 657 SKLTIEDAKFRELQERKMELHQAIV-NMERGGSADGLLQVRADRIQSDLEELLKAL----TERCKKHGIDVKSHAVIE 729 (1111)
Q Consensus 657 sQLavlEa~LqdiQ~EL~ELeqeLq-klk~g~~~n~~Lqer~~~in~el~eL~kqL----~E~~~~lgvk~k~~~~ie 729 (1111)
..|..+|.....++-+|+++.+++. .+. ..+..+.+.-...+..|.+|+..| ..+..++-+|-|++..|.
T Consensus 482 ~~l~~~E~~~lRl~~el~~~r~e~er~l~---eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~ 556 (859)
T PF01576_consen 482 DALEAEEQKKLRLQVELQQLRQEIERELQ---EKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLN 556 (859)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777775 333 333334444455556666666666 336666777777766553
No 382
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.29 E-value=4.3 Score=48.53 Aligned_cols=52 Identities=21% Similarity=0.159 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAE 654 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~ 654 (1111)
.....+.+|.|+.+|.|.-.-|.......+++...|..+++++.+-.+|.+.
T Consensus 267 ~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed 318 (521)
T KOG1937|consen 267 FEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWED 318 (521)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777888888887777766666666777776666555555444443
No 383
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.29 E-value=1.2 Score=54.82 Aligned_cols=92 Identities=18% Similarity=0.250 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Q 001269 624 LNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSD 703 (1111)
Q Consensus 624 L~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~e 703 (1111)
+..+..++..++++++.|+.++++..+.+.+|+++|..+-..+.. .....-++..++ .....|+.++.+-...
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~----~~~~~rei~~~~---~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD----KVRKDREIRARD---RRIERLEKELEEKKKR 496 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 444445555566666666666666667777777777655333221 111112222222 3333444666666677
Q ss_pred HHHHHHHHHHHHHHhcccc
Q 001269 704 LEELLKALTERCKKHGIDV 722 (1111)
Q Consensus 704 l~eL~kqL~E~~~~lgvk~ 722 (1111)
+++|+..|++.-+...+..
T Consensus 497 ve~L~~~l~~l~k~~~lE~ 515 (652)
T COG2433 497 VEELERKLAELRKMRKLEL 515 (652)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 7888888888766655443
No 384
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.29 E-value=0.42 Score=49.57 Aligned_cols=88 Identities=20% Similarity=0.196 Sum_probs=43.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH-HHHHHH
Q 001269 630 RALADRREAETLGKKYEEKYKQVAEIASKLTIEDAK--FRELQERKMELHQAIVNMERGGSADGLLQVRADRI-QSDLEE 706 (1111)
Q Consensus 630 q~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~--LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~i-n~el~e 706 (1111)
+..++..+|..|+.++.+..+++..|+..|+.+... ..+++.++.+|++++.+++ .....|+.-...+ ..++..
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~---~kL~~l~~~~~~vs~ee~~~ 149 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE---EKLEKLRSGSKPVSPEEKEK 149 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCCCCHHHHHH
Confidence 344455556666655555556666666666666444 3455555555555555555 2222222211111 125555
Q ss_pred HHHHHHHHHHHhcc
Q 001269 707 LLKALTERCKKHGI 720 (1111)
Q Consensus 707 L~kqL~E~~~~lgv 720 (1111)
+.+....|.+.+..
T Consensus 150 ~~~~~~~~~k~w~k 163 (169)
T PF07106_consen 150 LEKEYKKWRKEWKK 163 (169)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555433
No 385
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.29 E-value=3.3 Score=53.86 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=30.9
Q ss_pred HHHHHHHHhhCCCCCC---ccCH-----HHHHHHHHhcCCCHHHHHHHHHhhCC---CCCCcc---CHHHHH
Q 001269 407 QKYSKVFMEVDTDRDG---RITG-----EQARNLFMSWRLPREVLKQVWDLSDQ---DSDSML---SLREFC 464 (1111)
Q Consensus 407 ~~Ye~IF~slDkD~DG---~ISG-----~Ear~~f~kSgLP~edL~qIW~LaDi---DnDG~L---dkdEF~ 464 (1111)
....+||+.++..+.- +||+ +|+.++|...-... +.+|-.-|. ++.|.+ ..+|+.
T Consensus 166 Ral~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~---~~~~~k~~~~~~~~kggV~vkGlEEi~ 234 (1041)
T KOG0243|consen 166 RALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSD---KKLRIKDDSTIVDGKGGVIVKGLEEII 234 (1041)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccc---cccccccCCcccCCcCcEEEecceeee
Confidence 4577899999864422 3454 45666654322221 677777777 555443 345553
No 386
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.24 E-value=1.1 Score=56.53 Aligned_cols=85 Identities=19% Similarity=0.258 Sum_probs=48.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHH
Q 001269 628 TERALADRREAETLGKKYEEKYKQVAEIASKLTI----------------------------EDAKFRELQERKMELHQA 679 (1111)
Q Consensus 628 ~eq~selkreLqsLR~eyEee~KqV~~LEsQLav----------------------------lEa~LqdiQ~EL~ELeqe 679 (1111)
.+++..++.++..|+.+++.-.+.++.|+.+|.. ...+|..++.|...|.+.
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555666666655432 245677788888888888
Q ss_pred HHHHhhcCCCc---------chHHHHHHHHHHHHHHHHHHHH
Q 001269 680 IVNMERGGSAD---------GLLQVRADRIQSDLEELLKALT 712 (1111)
Q Consensus 680 Lqklk~g~~~n---------~~Lqer~~~in~el~eL~kqL~ 712 (1111)
|..+..|+... ...+..+.++..+|+.+++.++
T Consensus 582 l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~ 623 (722)
T PF05557_consen 582 LRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQ 623 (722)
T ss_dssp HHHHTTTT----------------HHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 87777554322 1224446666666666666553
No 387
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=92.17 E-value=4.9 Score=47.25 Aligned_cols=15 Identities=0% Similarity=0.145 Sum_probs=7.5
Q ss_pred CCCHHHHHHHHHhhC
Q 001269 437 RLPREVLKQVWDLSD 451 (1111)
Q Consensus 437 gLP~edL~qIW~LaD 451 (1111)
|-++....+|=+...
T Consensus 76 ~ADk~Q~~rIkq~FE 90 (455)
T KOG3850|consen 76 NADKQQVARIKQVFE 90 (455)
T ss_pred ccchhhhHHHHHHHH
Confidence 555555555544443
No 388
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.15 E-value=0.2 Score=57.28 Aligned_cols=73 Identities=21% Similarity=0.395 Sum_probs=61.8
Q ss_pred CCCHHH-HHHHHHHHHhhCCCCCCccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHH
Q 001269 400 KMKPSD-IQKYSKVFMEVDTDRDGRITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMER 472 (1111)
Q Consensus 400 ~ISpeD-k~~Ye~IF~slDkD~DG~ISG~Ear~~f~kS--gLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI~~ 472 (1111)
.+++++ +.+...||..+|.++||+|+-.|++..++.+ +.-.....+-|...|.++||.|+++|+..+++-...
T Consensus 69 ~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~ 144 (325)
T KOG4223|consen 69 QLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVD 144 (325)
T ss_pred hhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhccc
Confidence 455544 4668999999999999999999999988865 677788888899999999999999999998885543
No 389
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.13 E-value=4.1 Score=52.13 Aligned_cols=50 Identities=10% Similarity=0.172 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 001269 660 TIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKA 710 (1111)
Q Consensus 660 avlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kq 710 (1111)
..++..+++++.+..++-.+|.+.+.+. .....++.+..+...+.++.+.
T Consensus 573 ~~a~~~l~~a~~~~~~~i~~lk~~~~~~-~~~~~~~~~~~~~~~l~~~~~~ 622 (782)
T PRK00409 573 KEAQQAIKEAKKEADEIIKELRQLQKGG-YASVKAHELIEARKRLNKANEK 622 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhhHHHHHHHHHHHHHhhhh
Confidence 3446667777777777766666543111 1112344444455555554443
No 390
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=92.13 E-value=2.7 Score=49.93 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV- 681 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq- 681 (1111)
+..+-.++++|+.....|.++|.+...++.++..+-...-.+|-...-++=+.+..|..+|+...=.+.+|..|.....
T Consensus 192 E~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~ 271 (447)
T KOG2751|consen 192 EERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVF 271 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4444445555555555555555555444444444444444444444444444444555666666556666666655544
Q ss_pred ----HHhhcC---C-------CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeeecCCC
Q 001269 682 ----NMERGG---S-------ADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFG 733 (1111)
Q Consensus 682 ----klk~g~---~-------~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk~k~~~~ielp~g 733 (1111)
.+-..| . --....+.-++||+-+.++.--|.-.|.++||.+--=.+ +|||
T Consensus 272 n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~~y~l--vp~G 335 (447)
T KOG2751|consen 272 NATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNFVRYRL--VPMG 335 (447)
T ss_pred hheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccceeee--eccc
Confidence 111111 1 112344667899999999999999999998887643332 3555
No 391
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=92.12 E-value=2 Score=50.83 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=25.6
Q ss_pred CHHHHHHHHH---HHHhhCCCCCCccCHHHHHHHHH
Q 001269 402 KPSDIQKYSK---VFMEVDTDRDGRITGEQARNLFM 434 (1111)
Q Consensus 402 SpeDk~~Ye~---IF~slDkD~DG~ISG~Ear~~f~ 434 (1111)
+.+||--|+. |-..+|.|.+|-|..+|--+||+
T Consensus 60 s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlr 95 (575)
T KOG4403|consen 60 SEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLR 95 (575)
T ss_pred cccchhhHHHHHHHHHhcccccCCCcccccchHHHH
Confidence 4467766665 55678999999999999887776
No 392
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=92.10 E-value=6.5 Score=46.97 Aligned_cols=36 Identities=8% Similarity=0.212 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 001269 646 EEKYKQVAEIASKLTIE-DAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 646 Eee~KqV~~LEsQLavl-Ea~LqdiQ~EL~ELeqeLq 681 (1111)
+....+++.++.+|... +..|+..+.+|..|.+.|.
T Consensus 303 ~~~~qrLd~L~~RL~~a~~~~L~~k~~rL~~L~~rL~ 339 (432)
T TIGR00237 303 ALQQLQFEKLEKRKQAALNKQLERTRQKKTRLTKRLT 339 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444454444322 4444444444444444443
No 393
>PRK10698 phage shock protein PspA; Provisional
Probab=92.09 E-value=16 Score=40.21 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 653 AEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 653 ~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
..|+.++...+..+..++.++..|+..|.+++
T Consensus 102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 102 ATLEHEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 394
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=92.09 E-value=11 Score=40.89 Aligned_cols=126 Identities=10% Similarity=0.033 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 587 KKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITE-RALADRREAETLGKKYEEKYKQVAEIASKLTIEDAK 665 (1111)
Q Consensus 587 keLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~e-q~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~ 665 (1111)
+-|.+|+.++..+..+...|..+++++.....++ +...+. ++...-+.=..+.+.+++-..++.+||.++..+|..
T Consensus 27 ~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~---~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a 103 (191)
T PTZ00446 27 KAILKNREAIDALEKKQVQVEKKIKQLEIEAKQK---VEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENM 103 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466788888777777788888887766554433 222211 111111112223334444445666666666655554
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001269 666 FRELQERKMELHQAIVNMERGGSADGLL-QVRADRIQSDLEELLKALTERCKKHG 719 (1111)
Q Consensus 666 LqdiQ~EL~ELeqeLqklk~g~~~n~~L-qer~~~in~el~eL~kqL~E~~~~lg 719 (1111)
.-..+ -+..|++.-..|+ ..+..+ =++++.|..+++|....-+|....++
T Consensus 104 ~~~~e-v~~aLk~g~~aLK---~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs 154 (191)
T PTZ00446 104 HLHKI-AVNALSYAANTHK---KLNNEINTQKVEKIIDTIQENKDIQEEINQALS 154 (191)
T ss_pred HHHHH-HHHHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 32221 2333333333333 111111 25777888888888888888888876
No 395
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=92.08 E-value=3.5 Score=48.51 Aligned_cols=140 Identities=14% Similarity=0.272 Sum_probs=65.1
Q ss_pred hhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001269 584 TAGKKVDEREKVILDSREK--IEFYRSKMQELVLYKSRCD-----NRLNEITERALADRREAETLGKKYEEKYKQVAEIA 656 (1111)
Q Consensus 584 dLtkeLAnLenQ~ed~~ek--ea~lrsQmQEL~~yKsra~-----qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LE 656 (1111)
++.+.|.+|.+.+..+... ++.++.++.+|...-..+. .+..++..+.+.++..++.++ +|++..++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~-~l~~~~~e~~~~~ 82 (367)
T PRK00578 4 EISERLKDLDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLE-ELRQRLDDLEELL 82 (367)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3344555565555554442 5556666666665544321 223333344444444444444 3444444444333
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHh-------hcCCCcchHHHHHH----HHHHHHHHHHHHHHHHHHHhccccc
Q 001269 657 SKLTI--EDAKFRELQERKMELHQAIVNME-------RGGSADGLLQVRAD----RIQSDLEELLKALTERCKKHGIDVK 723 (1111)
Q Consensus 657 sQLav--lEa~LqdiQ~EL~ELeqeLqklk-------~g~~~n~~Lqer~~----~in~el~eL~kqL~E~~~~lgvk~k 723 (1111)
+=+.. -+.-+..++.++.+|+.+|.+++ .-...|..|+-|+- +..-=..+|-+-+..||...|+++.
T Consensus 83 ell~~e~D~el~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~~~e 162 (367)
T PRK00578 83 ELAEEEDDEETLAEAEAELKALEKKLAALELERLLSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGFKVE 162 (367)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 32211 01123333444444444444333 11234444444331 2222345666667788888888877
Q ss_pred c
Q 001269 724 S 724 (1111)
Q Consensus 724 ~ 724 (1111)
+
T Consensus 163 v 163 (367)
T PRK00578 163 V 163 (367)
T ss_pred E
Confidence 5
No 396
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=92.05 E-value=2.8 Score=52.74 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKF 666 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~L 666 (1111)
.+.++.++++|....-+|-..-.-++..+ +++.+...+|.++|+..|.++.+-.+++.+|+.+
T Consensus 970 Le~~~ael~eleqk~le~~eDea~aRh~k-efE~~mrdhrselEe~kKe~eaiineiee~eaeI 1032 (1424)
T KOG4572|consen 970 LEKEFAELIELEQKALECKEDEAFARHEK-EFEIEMRDHRSELEEKKKELEAIINEIEELEAEI 1032 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777776666633322333333 3666777777777777777777777777666653
No 397
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.05 E-value=4.6 Score=43.53 Aligned_cols=97 Identities=24% Similarity=0.339 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN 682 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk 682 (1111)
...++..+.+|+.-|.++.+.+.+.+ .+.+++.++......+++.+..+|..+-.+|.+.+.+...-..
T Consensus 88 V~~l~~RL~kLL~lk~~~~~~~e~~k-----------~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~ 156 (190)
T PF05266_consen 88 VKFLRSRLNKLLSLKDDQEKLLEERK-----------KLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEA 156 (190)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHH-----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777766644433332 2333333333334455555555555555555555444444444
Q ss_pred HhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 001269 683 MERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 683 lk~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
.. .+...||..++.|+.++..++-+.+.
T Consensus 157 ~~---~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 157 KD---KEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 55666667777777777777665543
No 398
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.02 E-value=5.9 Score=49.80 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavl 662 (1111)
-+.|+.++++++..+.++-.+|+.-..+.++-++-+.+|+..|+.++..+.+|.+.|.++
T Consensus 986 nekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~ 1045 (1480)
T COG3096 986 NEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDI 1045 (1480)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 466889999999999999999999999999999999999999999999999999888654
No 399
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=92.02 E-value=2.1 Score=49.05 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 651 QVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1111)
Q Consensus 651 qV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~ 717 (1111)
+|+.|...|..+|..|.+++.++.+...++.. +|+-++.|+.++++|+.+|.++.++
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr----------~K~~~d~L~~e~~~Lre~L~~rdel 169 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELER----------QKRAHDSLREELDELREQLKQRDEL 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555544444433 3466677778888888888776554
No 400
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=92.01 E-value=3.1 Score=39.17 Aligned_cols=67 Identities=22% Similarity=0.360 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 001269 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTER 714 (1111)
Q Consensus 635 kreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~ 714 (1111)
+.++..|..++..-..+.++++.+|+..-..++.+++.+-+|+.+-.+++ ..-..||..|..+|..+
T Consensus 10 r~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK-------------~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 10 RQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK-------------QQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhh
Confidence 34444444444444457777888888788888888888888888888888 33455666666666543
No 401
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.99 E-value=2.6 Score=55.55 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001269 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERAL 632 (1111)
Q Consensus 585 LtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~s 632 (1111)
++.++..++.++....+..+.++.|.+.+..+-.+.++++..+.+.++
T Consensus 185 l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in 232 (1109)
T PRK10929 185 LKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLN 232 (1109)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554455667777776666666666666666666555
No 402
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=91.96 E-value=14 Score=36.58 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 001269 594 KVILDSREKIEFYRSKMQELVLYKSRCDNRLNE 626 (1111)
Q Consensus 594 nQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e 626 (1111)
.++............++++|..|+....+++..
T Consensus 20 ~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 52 (141)
T TIGR02473 20 LELAKAQAEFERLETQLQQLIKYREEYEQQALE 52 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333477778888888888877666654
No 403
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=91.96 E-value=8.4 Score=44.81 Aligned_cols=70 Identities=20% Similarity=0.354 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeeecCCCcCCCcccccccchh
Q 001269 668 ELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWDE 747 (1111)
Q Consensus 668 diQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk~k~~~~ielp~gw~~~~~e~a~~w~e 747 (1111)
+.+.++.+|+.+++.. ++-.....++++..++..+++....+++|-..+. ++=-.|.-|...+-++|-|
T Consensus 94 ~~~~q~~~l~~~~~~~--~~~s~~~y~~~~~~l~~~l~~~l~~~~~~y~~~d---------~~q~dw~~G~~~a~~~y~d 162 (332)
T TIGR01541 94 TFRKQQRDLNKAMTAK--GLAGSDLYKEQLAAIKAALNEALAELHAYYAAED---------ALQGDWLAGARSGLADYGE 162 (332)
T ss_pred HHHHHHHHHHHhhhhc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhHHHHHHHHHHHHHH
Confidence 3344445555555431 3456778888888888888888777777544422 2234688888877777765
Q ss_pred h
Q 001269 748 D 748 (1111)
Q Consensus 748 ~ 748 (1111)
+
T Consensus 163 ~ 163 (332)
T TIGR01541 163 T 163 (332)
T ss_pred H
Confidence 3
No 404
>PRK00106 hypothetical protein; Provisional
Probab=91.94 E-value=8 Score=47.67 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 001269 656 ASKLTIEDAKFRELQ 670 (1111)
Q Consensus 656 EsQLavlEa~LqdiQ 670 (1111)
|.+|..-|..|.+.+
T Consensus 103 E~rL~qREE~LekRe 117 (535)
T PRK00106 103 ESRLTERATSLDRKD 117 (535)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 405
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.90 E-value=5.2 Score=44.50 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001269 663 DAKFRELQERKMELHQAIVNM 683 (1111)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqkl 683 (1111)
+..+..++.++..|.++...-
T Consensus 81 e~e~~e~~~~i~~l~ee~~~k 101 (246)
T PF00769_consen 81 EQELREAEAEIARLEEESERK 101 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 406
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=91.89 E-value=3.1 Score=43.22 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 001269 708 LKALTERCKK 717 (1111)
Q Consensus 708 ~kqL~E~~~~ 717 (1111)
..+|++..++
T Consensus 200 a~~L~~~v~~ 209 (213)
T PF00015_consen 200 AEELQELVDR 209 (213)
T ss_dssp HCCCCHHCHH
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 407
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=91.87 E-value=4.9 Score=47.88 Aligned_cols=77 Identities=19% Similarity=0.221 Sum_probs=40.9
Q ss_pred HhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 001269 633 ADRREAETLGKKYEEKYKQV--------AEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDL 704 (1111)
Q Consensus 633 elkreLqsLR~eyEee~KqV--------~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el 704 (1111)
.++..+..+++.+.++.+++ +.++++++.++..+++++.++..+-...+++. .|+.+++-.+..+
T Consensus 317 ~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~-------~L~Re~~~~r~~y 389 (458)
T COG3206 317 ALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLR-------ELEREAEAARSLY 389 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHH-------HHHHHHHHHHHHH
Confidence 34444444444444444433 33444444444444444444444444444444 6777777777777
Q ss_pred HHHHHHHHHHHH
Q 001269 705 EELLKALTERCK 716 (1111)
Q Consensus 705 ~eL~kqL~E~~~ 716 (1111)
+.|-...+|-..
T Consensus 390 e~lL~r~qe~~~ 401 (458)
T COG3206 390 ETLLQRYQELSI 401 (458)
T ss_pred HHHHHHHHHHHH
Confidence 777776666433
No 408
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=91.85 E-value=3.3 Score=37.22 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 662 EDAKFRELQERKMELHQAIVNMERG-GSADGLLQVRADRIQSDLEELLKALTERCKKH 718 (1111)
Q Consensus 662 lEa~LqdiQ~EL~ELeqeLqklk~g-~~~n~~Lqer~~~in~el~eL~kqL~E~~~~l 718 (1111)
++..+...+.++..|.+.-+.+... ......|+++++.|+..-+.|...+.+|++.|
T Consensus 46 ~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 46 LQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3334444444444444444444322 24667899999999999999999999998875
No 409
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=91.83 E-value=6.9 Score=48.92 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLN-EITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFR 667 (1111)
Q Consensus 589 LAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~-e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~Lq 667 (1111)
-.+.+..|.++.+.+..+-..+++|..+.....+++. .+++....+.+--...+++|.-.-++|+.|..++..-|..++
T Consensus 178 REET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~k 257 (786)
T PF05483_consen 178 REETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIK 257 (786)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHH
Confidence 3455556666666678888888999888888877775 666544434333334444555555678888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001269 668 ELQERKMELHQAIVNMER 685 (1111)
Q Consensus 668 diQ~EL~ELeqeLqklk~ 685 (1111)
++.-.|++-+..+.++++
T Consensus 258 dl~~~l~es~~~~~qLeE 275 (786)
T PF05483_consen 258 DLLLLLQESQDKCNQLEE 275 (786)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888877777776663
No 410
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.82 E-value=12 Score=44.70 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchHHHHHH
Q 001269 670 QERKMELHQAIVNMERGGSADGLLQVRAD 698 (1111)
Q Consensus 670 Q~EL~ELeqeLqklk~g~~~n~~Lqer~~ 698 (1111)
++|++++.+|-..++ .+|.-||+.+.
T Consensus 277 ~ek~~qy~~Ee~~~r---een~rlQrkL~ 302 (552)
T KOG2129|consen 277 QEKLMQYRAEEVDHR---EENERLQRKLI 302 (552)
T ss_pred HHHHHHHHHHHhhHH---HHHHHHHHHHH
Confidence 445555555555555 55555555543
No 411
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.80 E-value=3.5 Score=48.77 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHhHHHHHHHHHHHHHHHH------HHHHHHH----HHHHHHHHHHHHHHH
Q 001269 604 EFYRSKMQELVLYKSRCDNR-LNEITERALADRREAETLGKKYEEKYK------QVAEIAS----KLTIEDAKFRELQER 672 (1111)
Q Consensus 604 a~lrsQmQEL~~yKsra~qe-L~e~~eq~selkreLqsLR~eyEee~K------qV~~LEs----QLavlEa~LqdiQ~E 672 (1111)
+.||..+=+|.++....+.- .+.+=.++.+++.+-..|.+|||+.+. +|.++-. .-+.+...++.+|.|
T Consensus 182 eQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~E 261 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAE 261 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHH
Confidence 44444444444433322222 233335555566666666666666553 2322210 012223345566888
Q ss_pred HHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHHHHHHHHH
Q 001269 673 KMELHQAIVNMERGGS-ADGLLQVRADRIQSDLEELLKAL 711 (1111)
Q Consensus 673 L~ELeqeLqklk~g~~-~n~~Lqer~~~in~el~eL~kqL 711 (1111)
+..|+..|...++.-. +-.-+.+.-..+..++..|++.|
T Consensus 262 veRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL 301 (552)
T KOG2129|consen 262 VERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKL 301 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888888886663221 22233333445566666676666
No 412
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.80 E-value=6.7 Score=46.99 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 001269 695 VRADRIQSDLEELLKALTERCKKHG 719 (1111)
Q Consensus 695 er~~~in~el~eL~kqL~E~~~~lg 719 (1111)
+-|-.|..|.-+|++|++-.+..++
T Consensus 403 ~DI~Kil~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 403 QDIVKILEETRELQKQENSESEALN 427 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555444443
No 413
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=91.77 E-value=2.4 Score=45.76 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=26.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 613 LVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 613 L~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
|+.+|...+..+.....+...|..+|..-+..-+++...-..+.+++..|+..-+..|.+|.+|+.+|..|+
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344443333222222222233333333344444444444444444444333
No 414
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.73 E-value=5.6 Score=48.60 Aligned_cols=127 Identities=17% Similarity=0.117 Sum_probs=74.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHH------------------HHHHH
Q 001269 586 GKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLG------------------KKYEE 647 (1111)
Q Consensus 586 tkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR------------------~eyEe 647 (1111)
+.-+.+|+.++++.-+.++.++++.+-+..-..+..+|..++.++...+.+.++.|+ +|++-
T Consensus 587 qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~ 666 (741)
T KOG4460|consen 587 QRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQL 666 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHH
Confidence 444445555554444445555566555665556666666666655555555555543 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 648 KYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1111)
Q Consensus 648 e~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~ 717 (1111)
--++++.|++.|+.+.++++..|.-+.+..++++|-+ -..=..+++.|++-|.+|...+.+..+.
T Consensus 667 ~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~-----Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~ 731 (741)
T KOG4460|consen 667 IPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPT-----YILSAYQRKCIQSILKELGEHIREMVKQ 731 (741)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc-----ccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357777888888888888776666666666666432 1111446667777777777666665443
No 415
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=91.71 E-value=4.7 Score=46.30 Aligned_cols=34 Identities=15% Similarity=0.435 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 650 KQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1111)
Q Consensus 650 KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1111)
.++.++..+|++++..|.+.+++..+++..|..+
T Consensus 134 ~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~ 167 (301)
T PF06120_consen 134 RKLAEATRELAVAQERLEQMQSKASETQATLNDL 167 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555433
No 416
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.70 E-value=7.9 Score=42.87 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 656 ASKLTIEDAKFRELQERKMELHQAI 680 (1111)
Q Consensus 656 EsQLavlEa~LqdiQ~EL~ELeqeL 680 (1111)
++.|.+++..++.+++|+..+.+=|
T Consensus 99 q~elEvl~~n~Q~lkeE~dd~keiI 123 (246)
T KOG4657|consen 99 QSELEVLRRNLQLLKEEKDDSKEII 123 (246)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444444444444444333
No 417
>PF15456 Uds1: Up-regulated During Septation
Probab=91.66 E-value=2.6 Score=42.66 Aligned_cols=93 Identities=18% Similarity=0.257 Sum_probs=53.4
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-----------HHHHHhHHHHHHHHH
Q 001269 575 ADSKLQDSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEIT-----------ERALADRREAETLGK 643 (1111)
Q Consensus 575 ~L~~~qEatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~-----------eq~selkreLqsLR~ 643 (1111)
.|+.+ |+.+|.+|+.-|++.+ ++++.++. |+.+...+-..|..+. +...+.+.++..+.
T Consensus 18 iLs~e-EVe~LKkEl~~L~~R~-------~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~- 87 (124)
T PF15456_consen 18 ILSFE-EVEELKKELRSLDSRL-------EYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESD- 87 (124)
T ss_pred ccCHH-HHHHHHHHHHHHHHHH-------HHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHH-
Confidence 34443 7777888888888888 55555555 4444444433343331 12223344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 644 KYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1111)
Q Consensus 644 eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1111)
+.|+++..+|..+|..+..++.+|-+=.+++-.+
T Consensus 88 ------rk~ee~~~eL~~le~R~~~~~~rLLeH~AavL~l 121 (124)
T PF15456_consen 88 ------RKCEELAQELWKLENRLAEVRQRLLEHTAAVLQL 121 (124)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666777777776666665544
No 418
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=91.66 E-value=9 Score=46.56 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=10.0
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 001269 691 GLLQVRADRIQSDLEELLK 709 (1111)
Q Consensus 691 ~~Lqer~~~in~el~eL~k 709 (1111)
..|+|+|......++++.+
T Consensus 143 ~Pl~e~l~~f~~~v~~~~~ 161 (475)
T PRK10361 143 SPLREQLDGFRRQVQDSFG 161 (475)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3455555555555555443
No 419
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=91.58 E-value=0.42 Score=41.53 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=38.8
Q ss_pred ccCHHHHHHHHHhc--CCCHHHHHHHHHhhCCCCCCccCHHHHHHHHHHH
Q 001269 423 RITGEQARNLFMSW--RLPREVLKQVWDLSDQDSDSMLSLREFCFALYLM 470 (1111)
Q Consensus 423 ~ISG~Ear~~f~kS--gLP~edL~qIW~LaDiDnDG~LdkdEF~IAMhLI 470 (1111)
+++..|++.+|+.. .+...-+..+..-||..++|+|+.+||.-+.+.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 46889999999987 4677778999999999999999999999887654
No 420
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=91.55 E-value=7.8 Score=40.17 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 653 AEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 653 ~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
--+|..+...+..++.+|+-+..++..|++|+
T Consensus 93 ~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le 124 (146)
T PF08702_consen 93 YILETKIINQPSNIRVLQNILRSNRQKIQRLE 124 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 45555556667777777777777777777766
No 421
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=91.53 E-value=1.8 Score=47.53 Aligned_cols=51 Identities=22% Similarity=0.183 Sum_probs=21.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 630 RALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAI 680 (1111)
Q Consensus 630 q~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeL 680 (1111)
+...++.++++..++++.-.+++++|+.|...+...+..+-++.+.|+++|
T Consensus 159 ~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 159 DLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444433
No 422
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=91.44 E-value=13 Score=43.02 Aligned_cols=113 Identities=13% Similarity=0.178 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 001269 606 YRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV---- 681 (1111)
Q Consensus 606 lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq---- 681 (1111)
++.-+.+++..-....-+-..+++.-.++..++..|.-.|++..+.++.+.+++...+.+-..+..+...|.+.+.
T Consensus 114 fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~kel~~ql~~aKlq~~~~l~a~~ee~~~ 193 (391)
T KOG1850|consen 114 FQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKELWEQLGKAKLQEIKLLTAKLEEASI 193 (391)
T ss_pred HHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333334444455777788888888888888888888887444443333333444433333
Q ss_pred HH-hhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 682 NM-ERGGSADGLLQVRADRIQSDLEELLKALTERCKKH 718 (1111)
Q Consensus 682 kl-k~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~l 718 (1111)
+- +.|-..+..+|.-+......=..|+.+|..|-.+|
T Consensus 194 ~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~aKy 231 (391)
T KOG1850|consen 194 QEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYMAKY 231 (391)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 22334555666666666666666677776665444
No 423
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=91.44 E-value=3.5 Score=39.78 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhccccc
Q 001269 703 DLEELLKALTERCKKHGIDVK 723 (1111)
Q Consensus 703 el~eL~kqL~E~~~~lgvk~k 723 (1111)
+|+++..+|-+|++.+-.|+|
T Consensus 77 ~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 77 ELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344566667777777766665
No 424
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.41 E-value=4.5 Score=50.72 Aligned_cols=44 Identities=23% Similarity=0.554 Sum_probs=31.6
Q ss_pred HHHH-HHHHhccccccceeeecCCCcCCCcccccccchhhhhhccccCCCcc
Q 001269 710 ALTE-RCKKHGIDVKSHAVIELPFGWQPGIQEGAGVWDEDWDKFEDAGFGNE 760 (1111)
Q Consensus 710 qL~E-~~~~lgvk~k~~~~ielp~gw~~~~~e~a~~w~e~wd~~~d~~f~~~ 760 (1111)
+++| .|+-|||..+ .|||-=+ =||-++++|.--=..+. -||.-+
T Consensus 451 ~vR~~LC~~L~v~~~-----~mPFAGE-LI~~~~~~WE~~~qRiL-~GF~~~ 495 (1104)
T COG4913 451 QVRENLCQDLGVSPR-----DMPFAGE-LIDPNNAEWEPVVQRIL-GGFAAE 495 (1104)
T ss_pred HHHHHHHHHcCCChh-----hCCcccc-ccCCCcccchHHHHHHh-hhchhh
Confidence 4455 8999999876 7999877 78999999975433333 367633
No 425
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=91.33 E-value=10 Score=44.70 Aligned_cols=63 Identities=11% Similarity=0.219 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 001269 641 LGKKYEEKYKQVAEIASKLTIEDAKFRELQERK----MELHQAIVNMERGGSADGLLQVRADRIQSDLEE 706 (1111)
Q Consensus 641 LR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL----~ELeqeLqklk~g~~~n~~Lqer~~~in~el~e 706 (1111)
||+.|.+++ ..|+-.|.++-..+.++=-+. +.|+++-+.++++..+|..|-.+-.++|--|..
T Consensus 415 LRrQyleel---qsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaa 481 (593)
T KOG4807|consen 415 LRRQYLEEL---QSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAA 481 (593)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 555444433 334444555544444443332 344444456666667777665554444443333
No 426
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=91.31 E-value=17 Score=38.49 Aligned_cols=38 Identities=29% Similarity=0.542 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 647 EKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 647 ee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
+-|.....|+-+|.+....-.+++.+-.+|+..|..++
T Consensus 81 ~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 81 EAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444557777777776666666666666666666555
No 427
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=91.31 E-value=1.8 Score=49.74 Aligned_cols=12 Identities=25% Similarity=0.307 Sum_probs=5.0
Q ss_pred hhhHHHHHHHHH
Q 001269 586 GKKVDEREKVIL 597 (1111)
Q Consensus 586 tkeLAnLenQ~e 597 (1111)
+++|.+++.+++
T Consensus 176 ~~ql~~~~~~l~ 187 (362)
T TIGR01010 176 ENEVKEAEQRLN 187 (362)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 428
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.27 E-value=14 Score=42.45 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 636 REAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 636 reLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
..+..+...|+.+..+|..--.+=..+|..|.++|.+-.=|+++|..+.
T Consensus 193 ~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 193 CQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555544444445556666666666666666666444
No 429
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.26 E-value=0.28 Score=49.12 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=45.8
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhC------C------CCHHHHHHHHH----hhcCCCCCCcCHHHHHHHH
Q 001269 10 ESFFRRADLDGDGRISGAEAVAFFQGS------N------LPKQVLAQIWM----HADHNHTSYLGRQEFYNAL 67 (1111)
Q Consensus 10 ~~iF~~lD~DgDGkISg~Ea~~ff~~S------G------LP~~~LaqIW~----LaD~d~DG~LdrdEF~vAM 67 (1111)
-.+|...|.|++|+|+|-|+...+.-. | .+..+|..|.+ --|-|+||+|+..||.++.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 368999999999999999998888653 3 24566666554 3467999999999999864
No 430
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=91.21 E-value=4.5 Score=39.12 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHH
Q 001269 604 EFYRSKMQELVLYKSRCDNRLNEI 627 (1111)
Q Consensus 604 a~lrsQmQEL~~yKsra~qeL~e~ 627 (1111)
..+..+.+.|.....++..-+.++
T Consensus 16 ~~l~~~~~~l~~~~~E~~~v~~EL 39 (105)
T cd00632 16 QAYIVQRQKVEAQLNENKKALEEL 39 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666665554433333
No 431
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=91.21 E-value=6.4 Score=46.36 Aligned_cols=56 Identities=27% Similarity=0.361 Sum_probs=48.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 629 ERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 629 eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
+++..++|+|+-|...|.++.=....|..++...+..|++.|.+-++|.+--+++.
T Consensus 421 eelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELn 476 (593)
T KOG4807|consen 421 EELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELN 476 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 55667899999999999999999999999999999999999999888876655554
No 432
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=91.21 E-value=8.2 Score=45.92 Aligned_cols=63 Identities=11% Similarity=0.183 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 001269 586 GKKVDEREKVILDSREK-IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEK 648 (1111)
Q Consensus 586 tkeLAnLenQ~ed~~ek-ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee 648 (1111)
...|.++.+++...... +-.++.-+.+++.-|.+.+..|..+.+++...+.+|..|+..|-.+
T Consensus 255 ~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK 318 (421)
T KOG2685|consen 255 DQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDK 318 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcc
Confidence 44455555555444433 6667777888888888888888888888888888888877555443
No 433
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.18 E-value=9.2 Score=50.47 Aligned_cols=70 Identities=9% Similarity=0.042 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCC--------------CcchHHHHHHHHHHHHHHHHH
Q 001269 645 YEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVN-MERGGS--------------ADGLLQVRADRIQSDLEELLK 709 (1111)
Q Consensus 645 yEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqk-lk~g~~--------------~n~~Lqer~~~in~el~eL~k 709 (1111)
+++..+++..++.++..++..+..++.++..++.++.+ +...+- +-..|+++|+..+..+..+..
T Consensus 719 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 798 (1047)
T PRK10246 719 WRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQT 798 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455555555555555555555555553 221111 112345555555555555555
Q ss_pred HHHHH
Q 001269 710 ALTER 714 (1111)
Q Consensus 710 qL~E~ 714 (1111)
.|.++
T Consensus 799 ~~~~~ 803 (1047)
T PRK10246 799 LVTQT 803 (1047)
T ss_pred HHHHH
Confidence 44444
No 434
>PRK10869 recombination and repair protein; Provisional
Probab=91.17 E-value=4.2 Score=50.05 Aligned_cols=92 Identities=11% Similarity=0.155 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhcC
Q 001269 622 NRLNEITERALADRREAETLGKKYEEKYK-------QVAEIASKLTIEDA-------KFRELQERKMELHQAIVNMERGG 687 (1111)
Q Consensus 622 qeL~e~~eq~selkreLqsLR~eyEee~K-------qV~~LEsQLavlEa-------~LqdiQ~EL~ELeqeLqklk~g~ 687 (1111)
.+|.++.+++.+....|+.+..++..... .+++||++|..+.. .+.++-..+.+++++|..+....
T Consensus 261 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e 340 (553)
T PRK10869 261 SKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQE 340 (553)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCH
Confidence 33444444444444444444444433322 24455555443311 14444455556667776666444
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHH
Q 001269 688 SADGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 688 ~~n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
..-..|++++..+..++.++..+|.+
T Consensus 341 ~~l~~Le~e~~~l~~~l~~~A~~LS~ 366 (553)
T PRK10869 341 DDLETLALAVEKHHQQALETAQKLHQ 366 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666654
No 435
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=91.17 E-value=0.16 Score=56.06 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhC-----CCCHHHHHHHHHhhcCCCCCCcCHHHHHHH
Q 001269 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGS-----NLPKQVLAQIWMHADHNHTSYLGRQEFYNA 66 (1111)
Q Consensus 6 ~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~S-----GLP~~~LaqIW~LaD~d~DG~LdrdEF~vA 66 (1111)
+..+..+|.++|.|.||+|+..|++++++.- .-..++-..-++.+|+|+||++.-+||-+-
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvk 165 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVK 165 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhH
Confidence 4567789999999999999999999998773 234455566789999999999999999764
No 436
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.14 E-value=4.6 Score=52.20 Aligned_cols=66 Identities=11% Similarity=0.186 Sum_probs=28.6
Q ss_pred HHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 618 SRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNM 683 (1111)
Q Consensus 618 sra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqkl 683 (1111)
+....+|++...++.+.-.++...++++++.+++...+..+-...+.++...+..|.+++.+|++.
T Consensus 293 s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 293 SQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 333333444444444334444444444444444444444333333444444444555555555533
No 437
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=91.12 E-value=3.1 Score=52.32 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 638 AETLGKKYEEKYKQVAEIASKLTIEDAKFRELQ 670 (1111)
Q Consensus 638 LqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ 670 (1111)
+..|+.++++..+.+..|..++..+...+++..
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~ 275 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEAL 275 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433333333
No 438
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.09 E-value=0.064 Score=67.06 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHH
Q 001269 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREA 638 (1111)
Q Consensus 585 LtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreL 638 (1111)
+.+++.+++.+|+....+...+..+++.|......+..+|.+..++...++.++
T Consensus 91 le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~l 144 (722)
T PF05557_consen 91 LEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEEELEQLKRKL 144 (722)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444444444445555555555555555555544444444333
No 439
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=91.07 E-value=12 Score=36.88 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 642 GKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 642 R~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
.++++++.+.....+..|..+.+.|..++.++..|+..|.+.+
T Consensus 66 ~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 66 EKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555444433
No 440
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=91.05 E-value=5.4 Score=46.82 Aligned_cols=123 Identities=11% Similarity=0.155 Sum_probs=65.4
Q ss_pred hhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh--------------HHHHHHHHHHHH
Q 001269 582 STTAGKKVDEREK-VILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALAD--------------RREAETLGKKYE 646 (1111)
Q Consensus 582 atdLtkeLAnLen-Q~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~sel--------------kreLqsLR~eyE 646 (1111)
+..|..+|+-|+. .+..+..+...+..+|++|...|....+. .+...+|.++ ..-|++|+ .+.
T Consensus 248 l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~-~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~-tL~ 325 (388)
T PF04912_consen 248 LNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKED-AEQESKIDELYEILPRWDPYAPSLPSLVERLK-TLK 325 (388)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccchhHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHH
Confidence 3445566665632 44445556677777777776555433111 1111122211 12222222 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q 001269 647 EKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALT 712 (1111)
Q Consensus 647 ee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~ 712 (1111)
..=.++.+.-+.|..+|....+++.+|...++.|.+++ ..+++.+..|+..+..|+..+.
T Consensus 326 ~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve------~~~~~N~~~i~~n~~~le~Ri~ 385 (388)
T PF04912_consen 326 SLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVE------EKFKENMETIEKNVKKLEERIA 385 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 11122223334466667777777777777777777777 2377777777777777776654
No 441
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=91.04 E-value=3.5 Score=38.84 Aligned_cols=64 Identities=11% Similarity=0.205 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001269 589 VDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQV 652 (1111)
Q Consensus 589 LAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV 652 (1111)
|..++.+++.+......++.+-.++..+-..+-+++..+++.+.+++..-..++.+||++...+
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rL 69 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARL 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544444446666666666666666666666666666666666666666666665544
No 442
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=91.03 E-value=7.5 Score=37.17 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001269 604 EFYRSKMQELVLYKSRC 620 (1111)
Q Consensus 604 a~lrsQmQEL~~yKsra 620 (1111)
..++..+.+|.....+.
T Consensus 18 ~~i~~~v~~l~~l~~~~ 34 (117)
T smart00503 18 QKISQNVAELQKLHEEL 34 (117)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 443
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=91.02 E-value=5.6 Score=40.73 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhcccc
Q 001269 695 VRADRIQSDLEELLKALTERC---KKHGIDV 722 (1111)
Q Consensus 695 er~~~in~el~eL~kqL~E~~---~~lgvk~ 722 (1111)
..++.+=--+.+|..++..|+ +.+|+.+
T Consensus 84 ~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 84 SELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 334444444444555544444 4455544
No 444
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=91.02 E-value=8.7 Score=40.15 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 623 RLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 623 eL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
++..++..|...+|+|..|.+-|+.+.+.......+.......-..+=++|.+|-.+-..++
T Consensus 85 Ev~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 85 EVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555556666666555555555444444444443334444444444444444433
No 445
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.02 E-value=12 Score=46.98 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHh
Q 001269 695 VRADRIQSDLEELLKALTE---RCKKH 718 (1111)
Q Consensus 695 er~~~in~el~eL~kqL~E---~~~~l 718 (1111)
.|-+.+.-++.+|+.-|++ ||+-+
T Consensus 605 rrEd~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 605 RREDMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666643 55543
No 446
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=91.01 E-value=5.5 Score=40.26 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=15.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 632 LADRREAETLGKKYEEKYKQVAEIASKLTI 661 (1111)
Q Consensus 632 selkreLqsLR~eyEee~KqV~~LEsQLav 661 (1111)
..+...+..|..+++...+.+......|..
T Consensus 75 ~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~ 104 (213)
T cd00176 75 EEIQERLEELNQRWEELRELAEERRQRLEE 104 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544443
No 447
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=91.01 E-value=5.8 Score=37.78 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHH-HHHHHHHHHHHHHHHHH
Q 001269 666 FRELQERKMELHQAIVNMERGGSADGLLQVRADR-IQSDLEELLKALTERCK 716 (1111)
Q Consensus 666 LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~-in~el~eL~kqL~E~~~ 716 (1111)
+..++.++..|+..+.++. ..-..+++.+++ -..++=...+.+.++|.
T Consensus 74 ~~~l~~q~~~l~~~l~~l~---~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~ 122 (127)
T smart00502 74 LKVLEQQLESLTQKQEKLS---HAINFTEEALNSGDPTELLLSKKLIIERLQ 122 (127)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 3444444444444444444 222233333333 22244444455555443
No 448
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=91.01 E-value=25 Score=38.17 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 664 AKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1111)
Q Consensus 664 a~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~ 717 (1111)
.+++.++..|..+++++.++..+ +.+..+|+..++.+|.+++....+-++.
T Consensus 115 ~~~~~~~~~L~k~~~~~~Kl~~~---~~s~~~K~~~~~~ei~~~e~~~~~a~~~ 165 (216)
T cd07627 115 QYWQSAESELSKKKAQLEKLKRQ---GKTQQEKLNSLLSELEEAERRASELKKE 165 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666676622 2344567777777777777776655544
No 449
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=90.91 E-value=4.5 Score=44.34 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=50.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERAL-ADRREAETLGKKYEEKYKQVAEIASKL 659 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~s-elkreLqsLR~eyEee~KqV~~LEsQL 659 (1111)
.++.+...+-++-+.-.+...|.-.-+.|++.+.-+.... |..++.++. ..+.+..-||+++|....+++.|.++|
T Consensus 63 QAETIt~aiT~v~ndsl~~vsk~~vtkaqq~~v~~QQ~~~---f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 63 QAETITSAITTVLNDSLETVSKELVTKAQQEKVSYQQKVD---FAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554444445455566666666655555 666654443 346778889999999999999999887
Q ss_pred H
Q 001269 660 T 660 (1111)
Q Consensus 660 a 660 (1111)
-
T Consensus 140 r 140 (220)
T KOG3156|consen 140 R 140 (220)
T ss_pred H
Confidence 4
No 450
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.90 E-value=2 Score=51.68 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=7.5
Q ss_pred ccCCCCCCCCcc
Q 001269 896 FGSSNFGGSPIR 907 (1111)
Q Consensus 896 f~s~~~~~~p~r 907 (1111)
+=||++|++=|-
T Consensus 348 WiSD~~GiPCIs 359 (472)
T TIGR03752 348 WISDPYGIPCIS 359 (472)
T ss_pred eecCCCCCCCCC
Confidence 446677776663
No 451
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.89 E-value=4.4 Score=49.37 Aligned_cols=15 Identities=7% Similarity=0.153 Sum_probs=7.7
Q ss_pred cCHHHHHHHHHHHHH
Q 001269 58 LGRQEFYNALKLVTV 72 (1111)
Q Consensus 58 LdrdEF~vAM~LVal 72 (1111)
....+|...++.+.+
T Consensus 83 ~~l~~fs~~~~~~~~ 97 (518)
T PF10212_consen 83 VKLKDFSEHFSSYVC 97 (518)
T ss_pred cchHHHHHHHHHHHH
Confidence 345555555555443
No 452
>PLN02939 transferase, transferring glycosyl groups
Probab=90.87 E-value=4.2 Score=52.93 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=32.0
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 001269 621 DNRLNEITERALADRREAETLGKKYEEKYKQ---VAEIASKLTIEDAKFRELQER 672 (1111)
Q Consensus 621 ~qeL~e~~eq~selkreLqsLR~eyEee~Kq---V~~LEsQLavlEa~LqdiQ~E 672 (1111)
..+|..++++-.-++..++.|+.++.++..- +-.||..-+.++++|++++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESK 279 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888877777899999999888776531 223333333344444444443
No 453
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=90.86 E-value=6.3 Score=45.06 Aligned_cols=26 Identities=4% Similarity=-0.097 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 659 LTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 659 LavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
+...+..+..++.++..+++++..++
T Consensus 154 ~~~a~~~~~~a~~~l~~a~~~~~~~~ 179 (346)
T PRK10476 154 VDQARTAQRDAEVSLNQALLQAQAAA 179 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666555
No 454
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=90.85 E-value=0.53 Score=56.72 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=57.0
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCC-----HHHHHHHHHhhcCCCCCCcCHHHHHHHHHHH
Q 001269 5 NQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLP-----KQVLAQIWMHADHNHTSYLGRQEFYNALKLV 70 (1111)
Q Consensus 5 ~~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SGLP-----~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LV 70 (1111)
+.....+-|..+| |++|+|+..++..+|.+.+++ .+++++|...++.|.+|.++++||+.++.-+
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 3456778899999 999999999999999998765 5999999999999999999999999865443
No 455
>COG5283 Phage-related tail protein [Function unknown]
Probab=90.77 E-value=5.4 Score=52.51 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=54.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 582 STTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLT 660 (1111)
Q Consensus 582 atdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLa 660 (1111)
+.+-+++..-|+.|......-..--..+|++|.+-..++..-+.+++++..++.|.++..++.|++--++.-.+|..+.
T Consensus 31 i~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~ 109 (1213)
T COG5283 31 IKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLR 109 (1213)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666643344434444556777777776666668888888888888888888888888887777776654
No 456
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.75 E-value=4.3 Score=51.20 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 635 kreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
..+...|+.++++-+..++.++-+|+..|..-+-+.-.|.+-.+||..|+
T Consensus 493 d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~ 542 (861)
T PF15254_consen 493 DIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLR 542 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHH
Confidence 34444455555555555555555555554444444444444444444444
No 457
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.73 E-value=3.7 Score=49.96 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 606 YRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 606 lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
+..++...+..|..+..+|+++..++..++.++..-|. +-|.||.++-++|..+..+|...+++|+.+|
T Consensus 446 L~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~----------NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 446 LQKRLESAEKEKESLEEELKEANQNISRLQDELETTRR----------NYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444455444444444444444443 3344555555555666666666666666655
No 458
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=90.69 E-value=21 Score=36.19 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 595 VILDSREKIEFYRSKMQELVLYKSRCDNRLNEIT------ERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRE 668 (1111)
Q Consensus 595 Q~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~------eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~Lqd 668 (1111)
+|..+..+......++++|..|+....+++.... ........=|..|...|.++...|..++.+|......+..
T Consensus 24 ~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~ 103 (147)
T PRK05689 24 QLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQE 103 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334448888889999999888877665532 1111123335566666666666666666655555444444
Q ss_pred HHHHHHHH
Q 001269 669 LQERKMEL 676 (1111)
Q Consensus 669 iQ~EL~EL 676 (1111)
+..+..-|
T Consensus 104 a~~~~k~l 111 (147)
T PRK05689 104 KKQRLEAL 111 (147)
T ss_pred HHHHHHHH
Confidence 44444333
No 459
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=90.59 E-value=14 Score=44.99 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Q 001269 654 EIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRI 700 (1111)
Q Consensus 654 ~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~i 700 (1111)
.++..+..+|..+...-+.+.|-+++|++++..+..+..+++-+...
T Consensus 272 ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~~~ 318 (596)
T KOG4360|consen 272 QLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALSHG 318 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHhh
Confidence 33444444444555555556666777777776666666666555544
No 460
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=90.59 E-value=5.1 Score=42.88 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 635 RREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 635 kreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
..+|..+-.+++++..-+++|++--+++-..|..++..-..|..+|+++.
T Consensus 59 s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt 108 (182)
T PF15035_consen 59 SPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLT 108 (182)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777778888888888777666666666666666666666666655
No 461
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.57 E-value=7.6 Score=43.25 Aligned_cols=63 Identities=16% Similarity=0.243 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH-HHHHhcc
Q 001269 655 IASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE-RCKKHGI 720 (1111)
Q Consensus 655 LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E-~~~~lgv 720 (1111)
|+.+....+..-..+..++.+++..+..+. .+.......+.+++.++.+.+..+.+ ..+++.|
T Consensus 66 L~~~~~~~~eEk~~Le~e~~e~~~~i~~l~---ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~ 129 (246)
T PF00769_consen 66 LEEEAEMQEEEKEQLEQELREAEAEIARLE---EESERKEEEAEELQEELEEAREDEEEAKEELLEV 129 (246)
T ss_dssp HHH------------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444445555555555555555 33333444444444555555554444 3344333
No 462
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=90.51 E-value=12 Score=45.85 Aligned_cols=8 Identities=38% Similarity=0.713 Sum_probs=4.3
Q ss_pred eeeecCCC
Q 001269 726 AVIELPFG 733 (1111)
Q Consensus 726 ~~ielp~g 733 (1111)
..|.||..
T Consensus 206 ~~v~lp~d 213 (514)
T TIGR03319 206 SVVNLPND 213 (514)
T ss_pred eeEEcCCh
Confidence 44566653
No 463
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=90.46 E-value=4.7 Score=45.99 Aligned_cols=85 Identities=11% Similarity=0.195 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Q 001269 599 SREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIED------AKFRELQER 672 (1111)
Q Consensus 599 ~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlE------a~LqdiQ~E 672 (1111)
|..++.++..|++-|..+=.++..+|.+++++-.+....+.+-...++++..+++.+.+++...- +-|..|+.-
T Consensus 264 I~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqa 343 (384)
T KOG0972|consen 264 IASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQA 343 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHH
Confidence 44446677777777777667777777777666666666666555555555555555555543331 125555555
Q ss_pred HHHHHHHHHHH
Q 001269 673 KMELHQAIVNM 683 (1111)
Q Consensus 673 L~ELeqeLqkl 683 (1111)
+..|+++.++|
T Consensus 344 vsKLk~et~~m 354 (384)
T KOG0972|consen 344 VSKLKEETQTM 354 (384)
T ss_pred HHHHHHHHHhh
Confidence 55555555543
No 464
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=90.44 E-value=3.7 Score=44.13 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHHHHH---HHHHHHHHhccccccceeee
Q 001269 691 GLLQVRADRIQSDLEELLK---ALTERCKKHGIDVKSHAVIE 729 (1111)
Q Consensus 691 ~~Lqer~~~in~el~eL~k---qL~E~~~~lgvk~k~~~~ie 729 (1111)
.++|.||+++..+|+.-.. ...||||.-|=.--|+.+|+
T Consensus 87 ~l~QARidRvK~HiDdkia~ePkFle~nQV~GniKlLd~lIe 128 (228)
T PF06721_consen 87 SLYQARIDRVKAHIDDKIADEPKFLEFNQVKGNIKLLDNLIE 128 (228)
T ss_pred HHHHHHHHHHHHHhhhhhhcchHHHHHHHhhchHHHHHHHhh
Confidence 6788999999999976443 56889998886655655554
No 465
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=90.41 E-value=14 Score=40.43 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 624 LNEITERALADRREAETLGKKYEEKYKQVAEIASK 658 (1111)
Q Consensus 624 L~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQ 658 (1111)
...+..........|+..+++|+...++++.+..+
T Consensus 109 ~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~ 143 (236)
T cd07651 109 MEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQ 143 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333334444556666666666666655555443
No 466
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=90.37 E-value=13 Score=41.98 Aligned_cols=12 Identities=8% Similarity=0.003 Sum_probs=5.8
Q ss_pred hhhhHHHHHHHH
Q 001269 585 AGKKVDEREKVI 596 (1111)
Q Consensus 585 LtkeLAnLenQ~ 596 (1111)
++.+|+.++.++
T Consensus 85 a~a~l~~~~~~~ 96 (334)
T TIGR00998 85 AEANLAALVRQT 96 (334)
T ss_pred HHHHHHHHHHHH
Confidence 344455555555
No 467
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=90.32 E-value=4.5 Score=44.53 Aligned_cols=63 Identities=10% Similarity=0.161 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001269 655 IASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGI 720 (1111)
Q Consensus 655 LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgv 720 (1111)
+++....+.+.+..+++|+++.+.+|.+++ .....|+.+++.++.|.+.|.+..+..+.....
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~---~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQ---KKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 566666777777777777777777777777 778888888888888888887666555554433
No 468
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.21 E-value=8.9 Score=48.63 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=19.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 688 SADGLLQVRADRIQSDLEELLKALTERCK 716 (1111)
Q Consensus 688 ~~n~~Lqer~~~in~el~eL~kqL~E~~~ 716 (1111)
.||..|..-+++-.+|+..|..-.+..+.
T Consensus 522 kEN~iL~itlrQrDaEi~RL~eLtR~LQ~ 550 (861)
T PF15254_consen 522 KENQILGITLRQRDAEIERLRELTRTLQN 550 (861)
T ss_pred hhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77888877777777777666655544443
No 469
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=90.19 E-value=0.69 Score=40.20 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=38.0
Q ss_pred cccHHHHHHHHHhCC--CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Q 001269 23 RISGAEAVAFFQGSN--LPKQVLAQIWMHADHNHTSYLGRQEFYNALKL 69 (1111)
Q Consensus 23 kISg~Ea~~ff~~SG--LP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~L 69 (1111)
|++-.|++.+|+.-+ +.+.-+..++..+|.+++|.|+.+||..-++.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 467789999999975 77888999999999999999999998876654
No 470
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=90.15 E-value=0.32 Score=33.36 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=19.1
Q ss_pred HHHHHHhhcCCCCCCcCHHHHHHHHH
Q 001269 43 LAQIWMHADHNHTSYLGRQEFYNALK 68 (1111)
Q Consensus 43 LaqIW~LaD~d~DG~LdrdEF~vAM~ 68 (1111)
+.+|+..+|.+++|+|++.||..+|.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45677777777777777777777664
No 471
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=90.04 E-value=18 Score=39.57 Aligned_cols=88 Identities=14% Similarity=0.182 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 001269 610 MQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAK-------FRELQERKMELHQAIVN 682 (1111)
Q Consensus 610 mQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~-------LqdiQ~EL~ELeqeLqk 682 (1111)
.+++...+.++......+.......-.+|...+++|+...++.+.++.++..++.. +..++.++..-.++..+
T Consensus 100 ~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~ 179 (251)
T cd07653 100 ISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEE 179 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence 33344445555555666666666677888888889998888888888777655433 33344444443333333
Q ss_pred HhhcCCCcchHHHHHHHHHHH
Q 001269 683 MERGGSADGLLQVRADRIQSD 703 (1111)
Q Consensus 683 lk~g~~~n~~Lqer~~~in~e 703 (1111)
.+ ......++.+|..
T Consensus 180 a~------~~Y~~~l~~~N~~ 194 (251)
T cd07653 180 AK------NEYAAQLQKFNKE 194 (251)
T ss_pred HH------HHHHHHHHHHHHH
Confidence 33 4445555555554
No 472
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=90.02 E-value=3.1 Score=40.63 Aligned_cols=30 Identities=3% Similarity=0.059 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 587 KKVDEREKVILDSREKIEFYRSKMQELVLY 616 (1111)
Q Consensus 587 keLAnLenQ~ed~~ekea~lrsQmQEL~~y 616 (1111)
.+++.++.++..+..+...+..++.+...-
T Consensus 10 ~~~q~~q~~~~~l~~q~~~le~~~~E~~~v 39 (110)
T TIGR02338 10 AQLQQLQQQLQAVATQKQQVEAQLKEAEKA 39 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445544444445555555554444
No 473
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=89.97 E-value=6.4 Score=49.81 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHH--hhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeeecCC---CcCCCcccc
Q 001269 669 LQERKMELHQAIVNM--ERGGSADGLLQVRADRIQSDLEELLKALTERCKKHGIDVKSHAVIELPF---GWQPGIQEG 741 (1111)
Q Consensus 669 iQ~EL~ELeqeLqkl--k~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~lgvk~k~~~~ielp~---gw~~~~~e~ 741 (1111)
+++|..-|.+++.++ ..+..-|..||+++.++|.|++ ..+.+-.+-+||+++.-.-.|++- .|-++.+++
T Consensus 576 ~kek~ea~~aev~~~g~s~~~~~~~~lkeki~~~~~Ei~---~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~K 650 (762)
T PLN03229 576 IKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIE---LELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEK 650 (762)
T ss_pred HHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHHH---HHHHHHHhccCchhhhhhhhhhcccccCCChhhHHH
Confidence 444444444444431 2234678899999999998776 334444456777776333334333 255555444
No 474
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=89.96 E-value=8.2 Score=41.44 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=25.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSR 619 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsr 619 (1111)
+...+..++..|+.++++++.+++.++.+++.+..-+..
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~ 101 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE 101 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344556777777777777777777777777777444333
No 475
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=89.94 E-value=0.27 Score=54.46 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHh-----cCCCHHHHHHHHHhhCCCCCCccCHHHHHH
Q 001269 404 SDIQKYSKVFMEVDTDRDGRITGEQARNLFMS-----WRLPREVLKQVWDLSDQDSDSMLSLREFCF 465 (1111)
Q Consensus 404 eDk~~Ye~IF~slDkD~DG~ISG~Ear~~f~k-----SgLP~edL~qIW~LaDiDnDG~LdkdEF~I 465 (1111)
.-+.++..||.+.|.|.||+|+..|+..-+++ +.-..++-+..++.+|+|+||.+..+||-+
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhh
Confidence 45677999999999999999999999886663 245556667778899999999999999965
No 476
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=89.93 E-value=21 Score=39.22 Aligned_cols=52 Identities=8% Similarity=0.074 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 661 IEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKH 718 (1111)
Q Consensus 661 vlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~l 718 (1111)
.+...+.+...++...++..+.|+ .-..++|+..|.+|+++......-...|
T Consensus 115 ~Lkk~~~ey~~~l~~~eqry~aLK------~hAeekL~~ANeei~~v~~~~~~e~~aL 166 (207)
T PF05010_consen 115 TLKKCIEEYEERLKKEEQRYQALK------AHAEEKLEKANEEIAQVRSKHQAELLAL 166 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334445555666666666666666 4445778888888888888865543333
No 477
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=89.87 E-value=9.6 Score=47.05 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHHHHH-HHHHhccccccc
Q 001269 666 FRELQERKMELHQAIVNMERGG-SADGLLQVRADRIQSDLEELLKALTE-RCKKHGIDVKSH 725 (1111)
Q Consensus 666 LqdiQ~EL~ELeqeLqklk~g~-~~n~~Lqer~~~in~el~eL~kqL~E-~~~~lgvk~k~~ 725 (1111)
|-++-..|.+++..|..+...+ .+-..++.=-.+.-..-+.|..+|.+ |.+++-++.+..
T Consensus 124 ~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w~~lv~~~~~~~ 185 (593)
T PF06248_consen 124 YLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSEEWERLVQWDSPSS 185 (593)
T ss_pred HHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhheeecCCCc
Confidence 3444455555555555543211 12222222222333334455566655 777777765544
No 478
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=89.84 E-value=1.5 Score=49.48 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 661 IEDAKFRELQERKMELHQAIVNME 684 (1111)
Q Consensus 661 vlEa~LqdiQ~EL~ELeqeLqklk 684 (1111)
....||.||.-|-..|+.=|+.|+
T Consensus 146 GiQKYFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 146 GIQKYFVDINIQNKKLESLLQSME 169 (305)
T ss_pred hHHHHHhhhhhhHhHHHHHHHHHH
Confidence 346788888888888888888666
No 479
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=89.74 E-value=4.1 Score=38.42 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001269 604 EFYRSKMQELVLYKSRCD 621 (1111)
Q Consensus 604 a~lrsQmQEL~~yKsra~ 621 (1111)
..+..+++.|...+.++.
T Consensus 15 ~~~~~q~~~l~~~~~~~~ 32 (106)
T PF01920_consen 15 QQLEQQIQQLERQLRELE 32 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555544443
No 480
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=89.74 E-value=7 Score=37.79 Aligned_cols=57 Identities=26% Similarity=0.369 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 624 LNEITERALADRREAETLGKKYEE---KYKQVAEIASKLTIEDAKFRELQERKMELHQAI 680 (1111)
Q Consensus 624 L~e~~eq~selkreLqsLR~eyEe---e~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeL 680 (1111)
..++...+..+++.++.|..+|++ .+++++.|+.+|+.+|..-..+-+-..+|+..+
T Consensus 37 Y~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 37 YKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444445555554444332 334555555566555555544444444444433
No 481
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=89.68 E-value=9.2 Score=43.31 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQA 679 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqe 679 (1111)
+..++.-.|+++...+...+.|+++...-+++..+|+.-+.+||...|-++.|++---.-=..+.+.+++|++|++-
T Consensus 107 Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~ 183 (338)
T KOG3647|consen 107 EKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQR 183 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444445555555444445555555555555555554444432111122234444555555444
No 482
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=89.62 E-value=6.9 Score=44.27 Aligned_cols=124 Identities=15% Similarity=0.075 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 001269 634 DRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 634 lkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E 713 (1111)
++.-|+.+..+.++-..++.++.+..+.+++.+..++.||..++.-|.+|+ .-- =..+++...--++|+++.+-
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq---siR---P~~MdEyE~~EeeLqkly~~ 183 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ---SIR---PAHMDEYEDCEEELQKLYQR 183 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc---hHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777778888888888888888888888888888777 111 12233333333445555544
Q ss_pred HHHHhccccccceeeecCC-----------CcCCCcccccccchhhhhhccccCCCcccccccc
Q 001269 714 RCKKHGIDVKSHAVIELPF-----------GWQPGIQEGAGVWDEDWDKFEDAGFGNEITFDVK 766 (1111)
Q Consensus 714 ~~~~lgvk~k~~~~ielp~-----------gw~~~~~e~a~~w~e~wd~~~d~~f~~~~t~~~~ 766 (1111)
|-..+-+...|.+-.+.=. .-++=|||+..+=+++ .-++|--.|-.+|.+
T Consensus 184 Y~l~f~nl~yL~~qldd~~rse~~rqeeaensm~~i~ekl~ee~~~---~d~~g~~DD~d~D~~ 244 (338)
T KOG3647|consen 184 YFLRFHNLDYLKSQLDDRTRSEPIRQEEAENSMPFIPEKLIEEDDD---DDDEGDLDDEDLDSE 244 (338)
T ss_pred HHHHHhhHHHHHHHHHHHhhhhHHHHHHHHhcchhhHHHhhhhhhh---ccccccccccccCCC
Confidence 4444333333322222111 1223477887765543 444454444445544
No 483
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=89.62 E-value=25 Score=35.61 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=43.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITER------ALADRREAETLGKKYEEKYKQVAEIASK 658 (1111)
Q Consensus 585 LtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq------~selkreLqsLR~eyEee~KqV~~LEsQ 658 (1111)
+..+|+.....+ .....++++|..|+....+++...... ......=|..|...|.++...|..++..
T Consensus 21 a~~~L~~a~~~~-------~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ 93 (146)
T PRK07720 21 ALGEYEEAVSRF-------EQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQ 93 (146)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444 677778888888888887776653311 1112333445665555555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 001269 659 LTIEDAKFRELQERK 673 (1111)
Q Consensus 659 LavlEa~LqdiQ~EL 673 (1111)
|......+..+..+.
T Consensus 94 ve~~r~~~~ea~~~~ 108 (146)
T PRK07720 94 MNRKQQDLTEKNIEV 108 (146)
T ss_pred HHHHHHHHHHHHHHH
Confidence 544444444433333
No 484
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=89.60 E-value=1.8 Score=45.10 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 637 EAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQE 671 (1111)
Q Consensus 637 eLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~ 671 (1111)
.|+..+.+|+....+++.++.||.....+|.+++.
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444433333
No 485
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=89.57 E-value=13 Score=38.71 Aligned_cols=46 Identities=24% Similarity=0.339 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q 001269 663 DAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKAL 711 (1111)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL 711 (1111)
++.+..++.++.+|...+++++ ..-..|-+|+.++..++.++...-
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~---~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQ---QALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666655 444444455555555555554443
No 486
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=89.56 E-value=18 Score=38.22 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 001269 692 LLQVRADRIQSDLEELLKALTE 713 (1111)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL~E 713 (1111)
.++..+.....++++...+|.+
T Consensus 142 ~~~~~~~~~~~~l~~~lekL~~ 163 (204)
T PF04740_consen 142 SFIDSLEKAKKKLQETLEKLRA 163 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 487
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=89.53 E-value=1.2 Score=50.58 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 662 EDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKK 717 (1111)
Q Consensus 662 lEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~ 717 (1111)
+-.|-+.++.|.+.|..|+..|. ..|..||+|+.++..||..|+..+.|..+.
T Consensus 239 AtRYRqKkRae~E~l~ge~~~Le---~rN~~LK~qa~~lerEI~ylKqli~e~~~~ 291 (294)
T KOG4571|consen 239 ATRYRQKKRAEKEALLGELEGLE---KRNEELKDQASELEREIRYLKQLILEVYKK 291 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456667788888999999999 999999999999999999999999997665
No 488
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=89.48 E-value=15 Score=40.87 Aligned_cols=48 Identities=6% Similarity=0.144 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001269 666 FRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALTERCKKH 718 (1111)
Q Consensus 666 LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~E~~~~l 718 (1111)
++.++..|+..++.+.+++.++. .+++.+++.++.+++....+.|+.+
T Consensus 135 ~~~a~~~L~kkr~~~~Kl~~~~k-----~dK~~~~~~ev~~~e~~~~~a~~~f 182 (234)
T cd07664 135 WQDAQVTLQKKREAEAKLQYANK-----PDKLQQAKDEIKEWEAKVQQGERDF 182 (234)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCc-----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666677777753332 3566677777777766666555543
No 489
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=89.43 E-value=5.9 Score=48.37 Aligned_cols=55 Identities=11% Similarity=0.299 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 001269 653 AEIASKLTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKA 710 (1111)
Q Consensus 653 ~~LEsQLavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kq 710 (1111)
..|+..|+..+..|.+++.+..++++.|+.++ +....-++.+.+....|-++++-
T Consensus 378 S~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lr---kdEl~Are~l~~~~~~l~eikR~ 432 (570)
T COG4477 378 SELQDNLEEIEKALTDIEDEQEKVQEHLTSLR---KDELEARENLERLKSKLHEIKRY 432 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666677777777777777777777777 55555566666666666555543
No 490
>PF15294 Leu_zip: Leucine zipper
Probab=89.42 E-value=4.5 Score=46.00 Aligned_cols=128 Identities=12% Similarity=0.092 Sum_probs=70.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHH
Q 001269 585 AGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNR--LNEITERALADRREAETLGKKYEEKYKQV----AEIASK 658 (1111)
Q Consensus 585 LtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qe--L~e~~eq~selkreLqsLR~eyEee~KqV----~~LEsQ 658 (1111)
|...|..++.+.....+.-..+..++.+|+.-....... +---..+++.++..+..|..+++....+. +.|+..
T Consensus 144 Lk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~ 223 (278)
T PF15294_consen 144 LKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKESQQKALEET 223 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444442222466777888887733333221 11122455566777777776666554433 334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q 001269 659 LTIEDAKFRELQERKMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLKALT 712 (1111)
Q Consensus 659 LavlEa~LqdiQ~EL~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~kqL~ 712 (1111)
|...-+.|-..|.+|..-+.+|.+.=+....-..+++-+..-|.+|.+|.+.|.
T Consensus 224 L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 224 LQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred HHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHhc
Confidence 444444444455555555555554443445566777778888888888887763
No 491
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=89.42 E-value=0.11 Score=66.49 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 001269 692 LLQVRADRIQSDLEELLKAL 711 (1111)
Q Consensus 692 ~Lqer~~~in~el~eL~kqL 711 (1111)
.|+.++..+|.+|.++++++
T Consensus 289 ~l~~qlsk~~~El~~~k~K~ 308 (859)
T PF01576_consen 289 ELERQLSKLNAELEQWKKKY 308 (859)
T ss_dssp --------------------
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 34444444444444444444
No 492
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=89.41 E-value=0.62 Score=61.39 Aligned_cols=79 Identities=16% Similarity=0.341 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC---------CCHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001269 6 QDQFESFFRRADLDGDGRISGAEAVAFFQGSN---------LPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSK 76 (1111)
Q Consensus 6 ~~~Y~~iF~~lD~DgDGkISg~Ea~~ff~~SG---------LP~~~LaqIW~LaD~d~DG~LdrdEF~vAM~LValAQ~G 76 (1111)
-..|.-+|+.+|.+..|+++-.+++.+|+.-| -|..++..|.+++|++++||+++.+|..-|- . .-.-
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi--~-~ETe 2328 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI--S-KETE 2328 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH--h-cccc
Confidence 34788899999999999999999999998853 4556899999999999999999999976652 1 1222
Q ss_pred CCCCHHHHHhh
Q 001269 77 RELTPDIVKAA 87 (1111)
Q Consensus 77 ~~Lspd~L~~~ 87 (1111)
.-++.+.|..+
T Consensus 2329 NI~s~~eIE~A 2339 (2399)
T KOG0040|consen 2329 NILSSEEIEDA 2339 (2399)
T ss_pred cccchHHHHHH
Confidence 44555666655
No 493
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=89.41 E-value=0.46 Score=49.30 Aligned_cols=53 Identities=30% Similarity=0.325 Sum_probs=44.7
Q ss_pred HHHhhCCCCCCccCHHHHHHHHHh---cCCCHHHHH----HHHHhhCCCCCCccCHHHHH
Q 001269 412 VFMEVDTDRDGRITGEQARNLFMS---WRLPREVLK----QVWDLSDQDSDSMLSLREFC 464 (1111)
Q Consensus 412 IF~slDkD~DG~ISG~Ear~~f~k---SgLP~edL~----qIW~LaDiDnDG~LdkdEF~ 464 (1111)
.|.-+|-|+|++|..+.|...+.+ .+|+.++.. +|..-+|.|+||+|++.||-
T Consensus 113 AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe 172 (189)
T KOG0038|consen 113 AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFE 172 (189)
T ss_pred eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHH
Confidence 477889999999999998887774 489988765 45567999999999999995
No 494
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=89.41 E-value=15 Score=43.92 Aligned_cols=17 Identities=0% Similarity=0.108 Sum_probs=9.1
Q ss_pred CCCHHHHHHHHHhhCCC
Q 001269 437 RLPREVLKQVWDLSDQD 453 (1111)
Q Consensus 437 gLP~edL~qIW~LaDiD 453 (1111)
+-++..+.+|=...+..
T Consensus 40 ~aDk~Q~~rIkq~Fekk 56 (395)
T PF10267_consen 40 NADKQQAARIKQVFEKK 56 (395)
T ss_pred hccHHHHHHHHHHHHHH
Confidence 45555555555555543
No 495
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=89.40 E-value=8.4 Score=51.34 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 647 EKYKQVAEIASKLTIEDAKFRELQERKMELHQAIV 681 (1111)
Q Consensus 647 ee~KqV~~LEsQLavlEa~LqdiQ~EL~ELeqeLq 681 (1111)
+....+.+|+.++..+...+..+..++.+|.+.++
T Consensus 875 ~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~ 909 (1294)
T KOG0962|consen 875 RSLARLQQLEEDIEELSEEITRLDSKVKELLERIQ 909 (1294)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 33333334444444444444444444444444433
No 496
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=89.36 E-value=17 Score=40.53 Aligned_cols=43 Identities=35% Similarity=0.397 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHH
Q 001269 603 IEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKY 645 (1111)
Q Consensus 603 ea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~ey 645 (1111)
+..+...|++|..-..+|...|.++.+...+..++-+.+|.+|
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~ 66 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKY 66 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666666666666666666666666
No 497
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=89.33 E-value=4.2 Score=48.55 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 585 AGKKVDEREKVILDSREKIEF--YRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIE 662 (1111)
Q Consensus 585 LtkeLAnLenQ~ed~~ekea~--lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavl 662 (1111)
+...|.+-.+++.+.+++.+. +-.--|+|..++.+. +.+-...........+++++|-+.+=...+++.|+.|+..+
T Consensus 257 A~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e-~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~L 335 (554)
T KOG4677|consen 257 ALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYRE-HLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLL 335 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-hhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhcCCCcchHHHHHHHHHHHHHHHHHHH------HHHHHHhccccccceeeecC
Q 001269 663 DAKFRELQERKMELHQAIV-NMERGGSADGLLQVRADRIQSDLEELLKAL------TERCKKHGIDVKSHAVIELP 731 (1111)
Q Consensus 663 Ea~LqdiQ~EL~ELeqeLq-klk~g~~~n~~Lqer~~~in~el~eL~kqL------~E~~~~lgvk~k~~~~ielp 731 (1111)
+..+.+++.+...|+.+++ +++ .+-+|+.-+-..+..|...+ +||-+..--+++.+.--.+|
T Consensus 336 rs~~~d~EAq~r~l~s~~~~q~~-------~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~ 404 (554)
T KOG4677|consen 336 RSQIIDIEAQDRHLESAGQTQIF-------RKHPRKASILNMPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIP 404 (554)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHH-------HhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhhhhhccchhhccCc
No 498
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=89.32 E-value=6.4 Score=43.05 Aligned_cols=99 Identities=14% Similarity=0.228 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 581 DSTTAGKKVDEREKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALA-DRREAETLGKKYEEKYKQVAEIASKL 659 (1111)
Q Consensus 581 EatdLtkeLAnLenQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~se-lkreLqsLR~eyEee~KqV~~LEsQL 659 (1111)
+++.|.+.+.+++.+++..++.....+..+...+..++.++.|++++-+++.. -..+|++...-|-+.- .++..+
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH----~~e~~e 108 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDH----ENEQAE 108 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhh----hhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 660 TIEDAKFRELQERKMELHQAIVNM 683 (1111)
Q Consensus 660 avlEa~LqdiQ~EL~ELeqeLqkl 683 (1111)
+.+...|.+++.+..++...|.+.
T Consensus 109 ~~ak~~l~~aE~~~e~~~~~L~~~ 132 (207)
T PF05546_consen 109 EEAKEALEEAEEKVEEAFDDLMRA 132 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 499
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=89.28 E-value=6.9 Score=46.04 Aligned_cols=143 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------
Q 001269 590 DEREKVILDSREKIEFYRSKMQELV--------LYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEI------ 655 (1111)
Q Consensus 590 AnLenQ~ed~~ekea~lrsQmQEL~--------~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~L------ 655 (1111)
.+++.++.....+...++.|.+.|. ........+...+..++..++.++..+..+|+...+.++..
T Consensus 92 ~~~~~~~~~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 171 (421)
T TIGR03794 92 PELRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFKR 171 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q ss_pred ----HHHHHHHH---HHHHHHHHHH-HHHHHHHHHHhhcCCCcchHHHHHHHH-HHHHHHHHHHHHH-HHHHhccccccc
Q 001269 656 ----ASKLTIED---AKFRELQERK-MELHQAIVNMERGGSADGLLQVRADRI-QSDLEELLKALTE-RCKKHGIDVKSH 725 (1111)
Q Consensus 656 ----EsQLavlE---a~LqdiQ~EL-~ELeqeLqklk~g~~~n~~Lqer~~~i-n~el~eL~kqL~E-~~~~lgvk~k~~ 725 (1111)
.++....+ ..+...+..+ .+++.+++.++..-.+...++.++..+ +.++.+++.++.+ ..++-..+..+.
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 172 DRILQQQWREEQEKYDAADKARAIYALQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHhhhcccHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred --eeeecCC
Q 001269 726 --AVIELPF 732 (1111)
Q Consensus 726 --~~ielp~ 732 (1111)
..|-=|+
T Consensus 252 ~~~~i~AP~ 260 (421)
T TIGR03794 252 LNTRIVSQH 260 (421)
T ss_pred cCCeEEcCC
No 500
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=89.23 E-value=6.9 Score=50.08 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001269 593 EKVILDSREKIEFYRSKMQELVLYKSRCDNRLNEITERALADRREAETLGKKYEEKYKQVAEIASKLTIEDAKFRELQER 672 (1111)
Q Consensus 593 enQ~ed~~ekea~lrsQmQEL~~yKsra~qeL~e~~eq~selkreLqsLR~eyEee~KqV~~LEsQLavlEa~LqdiQ~E 672 (1111)
+.-|+..++-......++++|...-.+...++.+..+++.+.+.+++.++.+|+++.+++++-+.++ ++...+.+++.
T Consensus 496 ~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~--~~~a~~ea~~~ 573 (771)
T TIGR01069 496 HFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK--KLELEKEAQEA 573 (771)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH
Q 001269 673 KMELHQAIVNMERGGSADGLLQVRADRIQSDLEELLK 709 (1111)
Q Consensus 673 L~ELeqeLqklk~g~~~n~~Lqer~~~in~el~eL~k 709 (1111)
+.+++.++.++-..-.+-...++.+..+..++.++..
T Consensus 574 ~~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~ 610 (771)
T TIGR01069 574 LKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKE 610 (771)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Done!