BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001270
(1111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 28/266 (10%)
Query: 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGL 561
V KDL + GK K +L+ ++ +I G I ++GP+GAGKTT L ++ + ++G+
Sbjct: 16 VVVKDLRKRI-GK-KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS--TLIKPSSGI 71
Query: 562 ILINGKN--EPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIE 619
+ + GKN E H +K+I ++P++ + N+ E L F A S + ++ ++E
Sbjct: 72 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS---SSSEIEEMVE 128
Query: 620 RVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGXXXXXXX 679
R + GL V T K G +++ + +++ P L +LDEPTSG
Sbjct: 129 RATEIAGLGEKIKDRVSTYSK-----GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR 183
Query: 680 XXXXXXXXXXXEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYFAGLG 739
EG+ I + H F D + L G V G+V++++E +
Sbjct: 184 EVRKILKQASQEGLTILVSSHNMLEVEF--LCDRIALIHNGTIVETGTVEELKERYKAQN 241
Query: 740 INVPERVNPPDHLIDILEGIVKPSAN 765
I ++ E +VK S N
Sbjct: 242 IE------------EVFEEVVKCSEN 255
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 20/231 (8%)
Query: 499 LIEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKA 558
++ + K+++ K L V I G ++GPSGAGKTTF+ +AG + +
Sbjct: 1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG--LDVPS 58
Query: 559 TG-------LILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAK 611
TG L+ NGK + + IG V Q ++ NLT EN+ F + ++K
Sbjct: 59 TGELYFDDRLVASNGK-LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT---NMKMSK 114
Query: 612 ADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+ +E V L + V + R +SGGQ++RV + +V +PSLLLLDEP S
Sbjct: 115 EEIRKRVEEVAKILDIHHVLNHF-----PRELSGGQQQRVALARALVKDPSLLLLDEPFS 169
Query: 672 GXXXXXXXXXXXXXXXXXXE-GVNICLVVHQPSYALFRMFDDLVLLAKGGL 721
GV + +V H P+ +F + D + +L KG L
Sbjct: 170 NLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKL 219
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 110/238 (46%), Gaps = 28/238 (11%)
Query: 503 SFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLI 562
SF L + LKG N H IR G + V+GPSG+GK+TFL L + G I
Sbjct: 12 SFGSLEV-LKGINVH--------IREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEI 60
Query: 563 LING-----KNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLV 617
+I+G K+ ++ ++ +G V Q + ++TV N+ A ++ + +
Sbjct: 61 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKA 119
Query: 618 IERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGXXXXX 677
+E ++D +GL+ + + +SGGQ +RV + + MEP ++L DEPTS
Sbjct: 120 ME-LLDKVGLKDKAHAYPDS-----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM 173
Query: 678 XXXXXXXXXXXXXEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYF 735
EG+ + +V H+ +A R D VL GG + G K E+ F
Sbjct: 174 VGEVLSVMKQLANEGMTMVVVTHEMGFA--REVGDRVLFMDGGYIIEEG---KPEDLF 226
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 110/238 (46%), Gaps = 28/238 (11%)
Query: 503 SFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLI 562
SF L + LKG N H IR G + V+GPSG+GK+TFL L + G I
Sbjct: 33 SFGSLEV-LKGINVH--------IREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEI 81
Query: 563 LING-----KNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLV 617
+I+G K+ ++ ++ +G V Q + ++TV N+ A ++ + +
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKA 140
Query: 618 IERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGXXXXX 677
+E ++D +GL+ + + +SGGQ +RV + + MEP ++L DEPTS
Sbjct: 141 ME-LLDKVGLKDKAHAYPDS-----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM 194
Query: 678 XXXXXXXXXXXXXEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYF 735
EG+ + +V H+ +A R D VL GG + G K E+ F
Sbjct: 195 VGEVLSVMKQLANEGMTMVVVTHEMGFA--REVGDRVLFMDGGYIIEEG---KPEDLF 247
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 70.1 bits (170), Expect = 6e-12, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 20/231 (8%)
Query: 499 LIEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKA 558
++ + K+++ K L V I G ++GPSGAGKTTF+ +AG + +
Sbjct: 1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG--LDVPS 58
Query: 559 TG-------LILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAK 611
TG L+ NGK + + IG V Q ++ NLT EN+ F + ++K
Sbjct: 59 TGELYFDDRLVASNGK-LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT---NMKMSK 114
Query: 612 ADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+ +E V L + V + R +SG Q++RV + +V +PSLLLLDEP S
Sbjct: 115 EEIRKRVEEVAKILDIHHVLNHF-----PRELSGAQQQRVALARALVKDPSLLLLDEPFS 169
Query: 672 GXXXXXXXXXXXXXXXXXXE-GVNICLVVHQPSYALFRMFDDLVLLAKGGL 721
GV + +V H P+ +F + D + +L KG L
Sbjct: 170 NLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKL 219
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 12/162 (7%)
Query: 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGK---NEPI 571
++ +LR ++ + +P I A GPSG GK+T S L + G I I+G+ N +
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNISL 71
Query: 572 HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVR 631
+++ IGFV QD + T+ ENL + L D V++ ++ +
Sbjct: 72 ENWRSQIGFVSQDSAIMAG-TIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENMP 126
Query: 632 DSLVGTVEKRG--ISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
D L V +RG ISGGQR+R+ + + P +L+LDE T+
Sbjct: 127 DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATA 168
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 68.2 bits (165), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 79/140 (56%), Gaps = 13/140 (9%)
Query: 534 VMGPSGAGKTTFLSALAGKAIACKATGLILINGKN-EPIHSYKKIIGFVPQDDIVHGNLT 592
++GP+GAGK+ FL +AG I G + +NG + P+ ++ IGFVPQD + +L+
Sbjct: 29 LLGPTGAGKSVFLELIAG--IVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLS 86
Query: 593 VEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVH 652
V N+ + R ++ + ++ + + + LG+ + D + +SGG+R+RV
Sbjct: 87 VYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDR-----KPARLSGGERQRVA 136
Query: 653 VGLEMVMEPSLLLLDEPTSG 672
+ +V++P LLLLDEP S
Sbjct: 137 LARALVIQPRLLLLDEPLSA 156
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 66.6 bits (161), Expect = 7e-11, Method: Composition-based stats.
Identities = 59/187 (31%), Positives = 85/187 (45%), Gaps = 16/187 (8%)
Query: 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGK---NEPIHS 573
H ++ + K+ G+I ++G +GAGKTT LSA+AG A K G I+ NG+ N+P H
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK--GKIIFNGQDITNKPAHV 77
Query: 574 YKKI-IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLG-LQTVR 631
+ I VP+ + LTV ENL A R K D +E + L+
Sbjct: 78 INRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRD----LEWIFSLFPRLKERL 133
Query: 632 DSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGXXXXXXXXXXXXXXXXXXE 691
L GT +SGG+++ + +G + P LL DEP+ G E
Sbjct: 134 KQLGGT-----LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQE 188
Query: 692 GVNICLV 698
G I LV
Sbjct: 189 GTTILLV 195
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 16/200 (8%)
Query: 508 TLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGK 567
+++ + ++L+ V + G+I V+G +G+GKTT L LAG A G I ++G
Sbjct: 16 SVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG---LLAAAGEIFLDGS 72
Query: 568 NEPIHSYKKIIGFV---PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDT 624
+K +G+V P I+ TVEE++ F L +++ I++V++
Sbjct: 73 PADPFLLRKNVGYVFQNPSSQIIGA--TVEEDVAFSLEI---MGLDESEMRKRIKKVLEL 127
Query: 625 LGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGXXXXXXXXXXXX 684
+GL S + + +SGGQ++R+ + + + L LDEP S
Sbjct: 128 VGL-----SGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQV 182
Query: 685 XXXXXXEGVNICLVVHQPSY 704
EG I LV H+ Y
Sbjct: 183 LESLKNEGKGIILVTHELEY 202
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 20/152 (13%)
Query: 525 KIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN-EPIHSYKKIIGFVPQ 583
K+ G ++GP+GAGKT FL +AG +G IL++GK+ + K I FV Q
Sbjct: 22 KVESGEYFVILGPTGAGKTLFLELIAG--FHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79
Query: 584 DDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRG- 642
+ + ++ V++NL F R + K+ +RV+D T RD + + R
Sbjct: 80 NYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLD-----TARDLKIEHLLDRNP 125
Query: 643 --ISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672
+SGG+++RV + +V P +LLLDEP S
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSA 157
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 59/229 (25%), Positives = 106/229 (46%), Gaps = 27/229 (11%)
Query: 499 LIEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKA 558
++E+ +++ K N L + KI+ G A++GPSG+GK+T L +AG I
Sbjct: 1 MVEIKLENIVK--KFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG--IYKPT 56
Query: 559 TGLILINGKN-EPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCR------LSAHLAK 611
+G I + K+ + + +G V Q+ ++ ++TV +N+ F R + + +
Sbjct: 57 SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVRE 116
Query: 612 ADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
K+L I+++++ Q +SGGQ++RV + +V EP +LLLDEP S
Sbjct: 117 VAKMLHIDKLLNRYPWQ--------------LSGGQQQRVAIARALVKEPEVLLLDEPLS 162
Query: 672 GXXXXXXXXXXXXXXXXXXE-GVNICLVVHQPSYALFRMFDDLVLLAKG 719
E G+ V H + AL M D + ++ +G
Sbjct: 163 NLDALLRLEVRAELKRLQKELGITTVYVTHDQAEAL-AMADRIAVIREG 210
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 122/253 (48%), Gaps = 30/253 (11%)
Query: 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYK 575
H L+ + I+ G +TA++G +G GK+T G I ++G IL + N+PI +S K
Sbjct: 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG--ILKPSSGRILFD--NKPIDYSRK 77
Query: 576 KI------IGFVPQD-DIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ 628
I IG V QD D + +V +++ F A ++ L + + ++ + G++
Sbjct: 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGA---VNMKLPEDEIRKRVDNALKRTGIE 134
Query: 629 TVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGXXXXXXXXXXXXXXXX 688
++D +S GQ+KRV + +VMEP +L+LDEPT+G
Sbjct: 135 HLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189
Query: 689 XXE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV---EEYFAGLGINVPE 744
E G+ I + H + ++ D V + K G + G+ K+V +E + + +P
Sbjct: 190 QKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLP- 246
Query: 745 RVNPPDHLIDILE 757
R+ HL++IL+
Sbjct: 247 RIG---HLMEILK 256
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 17/150 (11%)
Query: 526 IRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN-EPIHSYKKIIGFVPQD 584
I G +GPSG GK+T L +AG + +G + I K ++ +G V Q
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPPAERGVGMVFQS 83
Query: 585 DIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERV---IDTLGLQTVRDSLVGTVEKR 641
++ +L+V EN+ F + LA A K ++ +RV + L L + D + +
Sbjct: 84 YALYPHLSVAENMSFGLK------LAGAKKEVINQRVNQVAEVLQLAHLLDR-----KPK 132
Query: 642 GISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+SGGQR+RV +G +V EPS+ LLDEP S
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 17/150 (11%)
Query: 526 IRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN-EPIHSYKKIIGFVPQD 584
I G +GPSG GK+T L +AG + +G + I K ++ +G V Q
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPPAERGVGMVFQS 83
Query: 585 DIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERV---IDTLGLQTVRDSLVGTVEKR 641
++ +L+V EN+ F + LA A K ++ +RV + L L + D + +
Sbjct: 84 YALYPHLSVAENMSFGLK------LAGAKKEVINQRVNQVAEVLQLAHLLDR-----KPK 132
Query: 642 GISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+SGGQR+RV +G +V EPS+ LLDEP S
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 17/150 (11%)
Query: 526 IRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN-EPIHSYKKIIGFVPQD 584
I G +GPSG GK+T L +AG + +G + I K ++ +G V Q
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPPAERGVGMVFQS 83
Query: 585 DIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERV---IDTLGLQTVRDSLVGTVEKR 641
++ +L+V EN+ F + LA A K ++ +RV + L L + D + +
Sbjct: 84 YALYPHLSVAENMSFGLK------LAGAKKEVINQRVNQVAEVLQLAHLLDR-----KPK 132
Query: 642 GISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+SGGQR+RV +G +V EPS+ LLD+P S
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDQPLS 162
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 13/152 (8%)
Query: 522 VTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILING--KNEPIHSYKKIIG 579
V+ +++ G A++GPSG GKTT L LAG I +G I + N+ Y++ +G
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAG--IYKPTSGEIYFDDVLVNDIPPKYRE-VG 78
Query: 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVE 639
V Q+ ++ ++TV EN+ F R R ++K + +E+ + + + + D+L+ +
Sbjct: 79 MVFQNYALYPHMTVFENIAFPLRAR---RISKDE----VEKRVVEIARKLLIDNLLDR-K 130
Query: 640 KRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+SGGQ++RV + +V +P +LL DEP S
Sbjct: 131 PTQLSGGQQQRVALARALVKQPKVLLFDEPLS 162
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 60.5 bits (145), Expect = 6e-09, Method: Composition-based stats.
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 14/217 (6%)
Query: 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN-EPIHSYKKI 577
+R V+ +IR G + ++GPSG+GKTT L +AG K G + I GK + K+
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK--GDVWIGGKRVTDLPPQKRN 88
Query: 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGT 637
+G V Q+ + ++TV +N+ F R + K + + ++ + L++ +
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLR---EKRVPKDEMDARVRELLRFMRLESYANRF--- 142
Query: 638 VEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGXXXXXXXXXXXXXXXXXXE-GVNIC 696
+SGGQ++RV + + P +LL DEP + E GV
Sbjct: 143 --PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSV 200
Query: 697 LVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733
V H AL + D +++L +G + + G+ ++V E
Sbjct: 201 FVTHDQEEAL-EVADRVLVLHEGNVEQF-GTPEEVYE 235
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 9/176 (5%)
Query: 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
++ +DL ++ G+ +L+ V + G + A+MGP+GAGK+T LAG G
Sbjct: 3 QLEIRDLWASIDGET--ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG 60
Query: 561 LILINGKN----EPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVL 616
IL++G+N P +K + Q + +T+ L + +L + A+
Sbjct: 61 EILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT 120
Query: 617 VIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672
+++ ++ L +S + G SGG++KR + +V+EP+ +LDE SG
Sbjct: 121 KVKKALELLDWD---ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSG 173
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 11/184 (5%)
Query: 492 TEVRKRPLIEVSFKDLTLTL-KGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALA 550
T K+ + + F D+ + K N L+ + I G A++G +G+GK+T L
Sbjct: 8 TSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY 67
Query: 551 GKAIACKATGLILINGKNEPIH---SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSA 607
A G I I GKN + S + IIG VPQD I+ N T++ N+ +
Sbjct: 68 R---FYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILF-NETIKYNILYGKLDATDE 123
Query: 608 HLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLD 667
+ KA K + I+ L + D++VG + +SGG+R+R+ + ++ +P +++ D
Sbjct: 124 EVIKATKSAQLYDFIEALPKKW--DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFD 180
Query: 668 EPTS 671
E TS
Sbjct: 181 EATS 184
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 13/159 (8%)
Query: 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILING---KNEPIHSY 574
+LR + ++ G+ A++G SG GK+T +S L K G I I+G ++ +
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK--GKITIDGVDVRDINLEFL 490
Query: 575 KKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSL 634
+K + V Q+ + N T+EEN+ + A K+ E+ I TL ++L
Sbjct: 491 RKNVAVVSQEPALF-NCTIEENISLGKEGITREEMVAACKMANAEKFIKTL--PNGYNTL 547
Query: 635 VGTVEKRG--ISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
VG RG +SGGQ++R+ + +V P +LLLDE TS
Sbjct: 548 VG---DRGTQLSGGQKQRIAIARALVRNPKILLLDEATS 583
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 21/165 (12%)
Query: 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN----EPIH 572
+L+ ++ + PG+ A++GPSG GK+T ++ L + G I I+G P H
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPEH 1150
Query: 573 SYKKIIGFVPQDDIVHGNLTVEENLWF--HARCRLSAHLAKADKVLVIERVIDTL--GLQ 628
+ +I V Q+ + + ++ EN+ + A + +A ++ I I L G +
Sbjct: 1151 TRSQI-AIVSQEPTLF-DCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFE 1208
Query: 629 TVRDSLVGTVEKRG--ISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
T V RG +SGGQ++R+ + +V P +LLLDE TS
Sbjct: 1209 T-------RVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATS 1246
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
E+ FK++ + K K +L+ +T I+PG+ A++GP+G+GKTT ++ L + G
Sbjct: 354 EIEFKNVWFSYD-KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR--G 410
Query: 561 LILING---KNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLV 617
IL++G + S + IG V QD I+ TV+ENL + + +A K+
Sbjct: 411 QILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPGATDEEIKEAAKLTH 469
Query: 618 IERVIDTL--GLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+ I L G +TV T +S GQR+ + + + P +L+LDE TS
Sbjct: 470 SDHFIKHLPEGYETVL-----TDNGEDLSQGQRQLLAITRAFLANPKILILDEATS 520
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 13/163 (7%)
Query: 514 KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP--- 570
K +L+ + K++ G+ A++G SG GK+T + + + + G++ I+G++
Sbjct: 401 KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTIN 458
Query: 571 IHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV 630
+ ++IIG V Q+ ++ T+ EN+ + + KA K I L Q
Sbjct: 459 VRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF- 516
Query: 631 RDSLVGTVEKRG--ISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
D+LVG +RG +SGGQ++R+ + +V P +LLLDE TS
Sbjct: 517 -DTLVG---ERGAQLSGGQKQRIAIARALVRNPKILLLDEATS 555
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSY 574
+L+ ++ +++ G+ A++G SG GK+T + L + G + ++GK +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 575 KKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAH--LAKADKVLVIERVIDTLGLQTVRD 632
+ +G V Q+ I+ + ++ EN+ + R+ ++ + +A K I + ID+L D
Sbjct: 1106 RAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL-----PD 1159
Query: 633 SLVGTVEKRG--ISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
V +G +SGGQ++R+ + +V +P +LLLDE TS
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATS 1200
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 13/163 (7%)
Query: 514 KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP--- 570
K +L+ + K++ G+ A++G SG GK+T + + + + G++ I+G++
Sbjct: 401 KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTIN 458
Query: 571 IHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV 630
+ ++IIG V Q+ ++ T+ EN+ + + KA K I L Q
Sbjct: 459 VRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF- 516
Query: 631 RDSLVGTVEKRG--ISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
D+LVG +RG +SGGQ++R+ + +V P +LLLDE TS
Sbjct: 517 -DTLVG---ERGAQLSGGQKQRIAIARALVRNPKILLLDEATS 555
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSY 574
+L+ ++ +++ G+ A++G SG GK+T + L + G + ++GK +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 575 KKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAH--LAKADKVLVIERVIDTLGLQTVRD 632
+ +G V Q+ I+ + ++ EN+ + R+ ++ + +A K I + ID+L D
Sbjct: 1106 RAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL-----PD 1159
Query: 633 SLVGTVEKRG--ISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
V +G +SGGQ++R+ + +V +P +LLLDE TS
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATS 1200
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 27/191 (14%)
Query: 488 MATNTEVRKRPLIEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLS 547
M N EV K ++EV ++LT N + + I+ G ++GPSG GKTT L
Sbjct: 1 MGNNIEVIK--MVEVKLENLTKRFG--NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLR 56
Query: 548 ALAGKAIACKATGLILINGKNEPIHSYK-KIIGFVPQDDIVHGNLTVEENLWFHARCR-- 604
+AG + G I ++ K + I V Q V ++TV EN+ F + +
Sbjct: 57 MIAG--LEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF 114
Query: 605 ----LSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660
+ + A ++L IE +++ Q +SGGQR+RV V +V+E
Sbjct: 115 PKDEIDKRVRWAAELLQIEELLNRYPAQ--------------LSGGQRQRVAVARAIVVE 160
Query: 661 PSLLLLDEPTS 671
P +LL+DEP S
Sbjct: 161 PDVLLMDEPLS 171
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 29/187 (15%)
Query: 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGL 561
+S KDL ++++ +K +LR ++ + PG + A+MGP+G+GK+T + LAG+ G
Sbjct: 2 LSIKDLHVSVE--DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT 59
Query: 562 ILINGKNEPIHSYKKIIGFVPQDDIVHG-----NLTVE----ENLWFHARC-------RL 605
+ GK+ ++ P+D G VE N +F R
Sbjct: 60 VEFKGKD--------LLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG 111
Query: 606 SAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLL 665
L + D ++E I L + D L +V G SGG++KR + V+EP L +
Sbjct: 112 QETLDRFDFQDLMEEKIALLKMP--EDLLTRSV-NVGFSGGEKKRNDILQMAVLEPELCI 168
Query: 666 LDEPTSG 672
LDE SG
Sbjct: 169 LDESDSG 175
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 17/160 (10%)
Query: 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGK--NEP-----I 571
+R ++ +++ G ++GPSG GKTT L +AG + + G I I K +P +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG--LEEPSRGQIYIGDKLVADPEKGIFV 76
Query: 572 HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVR 631
+ I V Q ++ ++TV +N+ F + R + + + + V + LGL +
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELL 133
Query: 632 DSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+ + R +SGGQR+RV +G +V +P + L+DEP S
Sbjct: 134 NR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLS 168
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 17/164 (10%)
Query: 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN---EPI 571
+ L+ V+ + PG+ A++GPSGAGK+T L L ++G I I+G++
Sbjct: 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVTQ 123
Query: 572 HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTL--GLQT 629
S + IG VPQD ++ N T+ +N+ + + + A + I I G +T
Sbjct: 124 ASLRSHIGVVPQDTVLF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRT 182
Query: 630 VRDSLVGTVEKRG--ISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
V +RG +SGG+++RV + ++ P ++LLDE TS
Sbjct: 183 -------QVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATS 219
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 29/187 (15%)
Query: 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGL 561
+S KDL ++++ +K +LR ++ + PG + A+MGP+G+GK+T + LAG+ G
Sbjct: 21 LSIKDLHVSVE--DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT 78
Query: 562 ILINGKNEPIHSYKKIIGFVPQDDIVHG-----NLTVE----ENLWFHARC-------RL 605
+ GK+ ++ P+D G VE N +F R
Sbjct: 79 VEFKGKD--------LLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG 130
Query: 606 SAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLL 665
L + D ++E I L + D L +V G SGG++KR + V+EP L +
Sbjct: 131 QETLDRFDFQDLMEEKIALLKMP--EDLLTRSV-NVGFSGGEKKRNDILQMAVLEPELCI 187
Query: 666 LDEPTSG 672
LDE SG
Sbjct: 188 LDESDSG 194
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 91/175 (52%), Gaps = 9/175 (5%)
Query: 502 VSFKDLTLTLKGKNKHL-LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
V F+D++ + L L+ +T +RPG +TA++GP+G+GK+T + L + + G
Sbjct: 15 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL--QNLYQPTGG 72
Query: 561 LILINGKNEPIHSYKKI---IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLV 617
+L++GK P + ++ + + V Q+ V G +++EN+ + + + A V
Sbjct: 73 QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKS 131
Query: 618 IERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672
+ GL D+ V + +SGGQR+ V + ++ +P +L+LD+ TS
Sbjct: 132 GAHSFIS-GLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSA 184
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 27/190 (14%)
Query: 489 ATNTEVRKRPLIEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSA 548
N EV K ++EV ++LT N + + I+ G ++GPSG GKTT L
Sbjct: 1 GNNIEVIK--MVEVKLENLTKRFG--NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRM 56
Query: 549 LAGKAIACKATGLILINGKNEPIHSYK-KIIGFVPQDDIVHGNLTVEENLWFHARCR--- 604
+AG + G I ++ K + I V Q V ++TV EN+ F + +
Sbjct: 57 IAG--LEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP 114
Query: 605 ---LSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEP 661
+ + A ++L IE +++ Q +SGGQR+RV V +V+EP
Sbjct: 115 KDEIDKRVRWAAELLQIEELLNRYPAQ--------------LSGGQRQRVAVARAIVVEP 160
Query: 662 SLLLLDEPTS 671
+LL+DEP S
Sbjct: 161 DVLLMDEPLS 170
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 13/152 (8%)
Query: 525 KIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP-----IHSYKKIIG 579
+I+ G ++GPSG GKTT L +AG + I N +P + ++ +
Sbjct: 28 EIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVA 87
Query: 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVE 639
V Q ++ + TV +N+ F + R + K + + V + LGL + + +
Sbjct: 88 XVFQSYALYPHXTVYDNIAFPLKLR---KVPKQEIDKRVREVAEXLGLTELLNR-----K 139
Query: 640 KRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
R +SGGQR+RV +G ++ P + L DEP S
Sbjct: 140 PRELSGGQRQRVALGRAIIRRPKVFLXDEPLS 171
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 20/181 (11%)
Query: 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
EV KD+T T +GK K L V+ I G+ A++G SG+GK+T + +G
Sbjct: 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSG 398
Query: 561 LILING---KNEPIHSYKKIIGFVPQDDIVH-GNLTVEENLWFHA-----RCRLSAHLAK 611
I ++G ++ + + ++ V Q+ VH N T+ N+ + A R ++ +
Sbjct: 399 SICLDGHDVRDYKLTNLRRHFALVSQN--VHLFNDTIANNIAYAAEGEYTREQIEQAARQ 456
Query: 612 ADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
A + IE + L D+++G +SGGQR+RV + ++ + +L+LDE TS
Sbjct: 457 AHAMEFIENMPQGL------DTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATS 509
Query: 672 G 672
Sbjct: 510 A 510
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 22/157 (14%)
Query: 526 IRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN----EPIHSYKKIIGFV 581
I G +TA++GPSG+GK+T LS L + A+G I ++G + P+ KI G V
Sbjct: 398 IPSGSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKI-GTV 454
Query: 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTL-----GLQTVRDSLVG 636
Q+ I+ + ++ EN+ + A S + +V + + + G TV
Sbjct: 455 SQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTV------ 507
Query: 637 TVEKRGI--SGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
V ++G+ SGGQ++R+ + ++ P +LLLDE TS
Sbjct: 508 -VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATS 543
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 22/157 (14%)
Query: 526 IRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN----EPIHSYKKIIGFV 581
I G +TA++GPSG+GK+T LS L + A+G I ++G + P+ KI G V
Sbjct: 367 IPSGSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKI-GTV 423
Query: 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTL-----GLQTVRDSLVG 636
Q+ I+ + ++ EN+ + A S + +V + + + G TV
Sbjct: 424 SQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTV------ 476
Query: 637 TVEKRGI--SGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
V ++G+ SGGQ++R+ + ++ P +LLLDE TS
Sbjct: 477 -VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATS 512
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 20/188 (10%)
Query: 494 VRKRPLIEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKA 553
V +R +V F+++T T G++ LR + KI G+ A++G SG+GK+T S +
Sbjct: 334 VIERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT--R 391
Query: 554 IACKATGLILING---KNEPIHSYKKIIGFVPQDDIVH-GNLTVEENLWFHARCRLS-AH 608
G IL++G + + S + + V Q+ VH N TV N+ + + S
Sbjct: 392 FYDIDEGEILMDGHDLREYTLASLRNQVALVSQN--VHLFNDTVANNIAYARTEQYSREQ 449
Query: 609 LAKADKVLVIERVIDTL--GLQTVRDSLVGTVEKRGI--SGGQRKRVHVGLEMVMEPSLL 664
+ +A ++ I+ + GL TV + + G+ SGGQR+R+ + ++ + +L
Sbjct: 450 IEEAARMAYAMDFINKMDNGLDTV-------IGENGVLLSGGQRQRIAIARALLRDSPIL 502
Query: 665 LLDEPTSG 672
+LDE TS
Sbjct: 503 ILDEATSA 510
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 88/184 (47%), Gaps = 29/184 (15%)
Query: 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
+++F+++ K + +L + I+ G + ++G SG+GK+T + + G
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENG 58
Query: 561 LILINGKNEPIHS---YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLV 617
+LI+G + + ++ +G V QD+++ N ++ +N+ A+ +
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISL------------ANPGMS 105
Query: 618 IERVIDTLGLQTVRD----------SLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLD 667
+E+VI L D ++VG + G+SGGQR+R+ + +V P +L+ D
Sbjct: 106 VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFD 164
Query: 668 EPTS 671
E TS
Sbjct: 165 EATS 168
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 88/184 (47%), Gaps = 29/184 (15%)
Query: 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
+++F+++ K + +L + I+ G + ++G SG+GK+T + + G
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENG 64
Query: 561 LILINGKNEPIHS---YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLV 617
+LI+G + + ++ +G V QD+++ N ++ +N+ A+ +
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISL------------ANPGMS 111
Query: 618 IERVIDTLGLQTVRD----------SLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLD 667
+E+VI L D ++VG + G+SGGQR+R+ + +V P +L+ D
Sbjct: 112 VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFD 170
Query: 668 EPTS 671
E TS
Sbjct: 171 EATS 174
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 88/184 (47%), Gaps = 29/184 (15%)
Query: 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
+++F+++ K + +L + I+ G + ++G SG+GK+T + + G
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENG 58
Query: 561 LILINGKNEPIHS---YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLV 617
+LI+G + + ++ +G V QD+++ N ++ +N+ A+ +
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISL------------ANPGMS 105
Query: 618 IERVIDTLGLQTVRD----------SLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLD 667
+E+VI L D ++VG + G+SGGQR+R+ + +V P +L+ D
Sbjct: 106 VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFD 164
Query: 668 EPTS 671
E TS
Sbjct: 165 EATS 168
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 88/184 (47%), Gaps = 29/184 (15%)
Query: 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
+++F+++ K + +L + I+ G + ++G SG+GK+T + + G
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENG 64
Query: 561 LILINGKNEPIHS---YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLV 617
+LI+G + + ++ +G V QD+++ N ++ +N+ A+ +
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISL------------ANPGMS 111
Query: 618 IERVIDTLGLQTVRD----------SLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLD 667
+E+VI L D ++VG + G+SGGQR+R+ + +V P +L+ D
Sbjct: 112 VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFD 170
Query: 668 EPTS 671
E TS
Sbjct: 171 EATS 174
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 88/184 (47%), Gaps = 29/184 (15%)
Query: 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
+++F+++ K + +L + I+ G + ++G SG+GK+T + + G
Sbjct: 3 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENG 60
Query: 561 LILINGKNEPIHS---YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLV 617
+LI+G + + ++ +G V QD+++ N ++ +N+ A+ +
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISL------------ANPGMS 107
Query: 618 IERVIDTLGLQTVRD----------SLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLD 667
+E+VI L D ++VG + G+SGGQR+R+ + +V P +L+ D
Sbjct: 108 VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFD 166
Query: 668 EPTS 671
E TS
Sbjct: 167 EATS 170
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 13/160 (8%)
Query: 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSY 574
+L+ + I G A +G SG GK+T ++ + +G ILI+G N S
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDFLTGSL 413
Query: 575 KKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSL 634
+ IG V QD+I+ + TV+EN+ + +A K+ I + L D+
Sbjct: 414 RNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFI--MNLPQGYDTE 470
Query: 635 VGTVEKRGI--SGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672
VG +RG+ SGGQ++R+ + + P +L+LDE TS
Sbjct: 471 VG---ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSA 507
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 90/177 (50%), Gaps = 15/177 (8%)
Query: 502 VSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
V F+D++ N +L+ +T + PG++TA++GP+G+GK+T + L + + G
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGG 74
Query: 561 LILINGKNEPI-----HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKV 615
+L++G EP+ H + V Q+ ++ G + EN+ + + + + V
Sbjct: 75 KVLLDG--EPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAY--GLTRTPTMEEITAV 129
Query: 616 LVIERVIDTL-GLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+ D + G D+ VG + +SGGQR+ V + ++ +P LL+LD+ TS
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDQATS 185
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 88/184 (47%), Gaps = 29/184 (15%)
Query: 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
+++F+++ K + +L + I+ G + ++G +G+GK+T + + G
Sbjct: 3 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI--QRFYIPENG 60
Query: 561 LILINGKNEPIHS---YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLV 617
+LI+G + + ++ +G V QD+++ N ++ +N+ A+ +
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISL------------ANPGMS 107
Query: 618 IERVIDTLGLQTVRD----------SLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLD 667
+E+VI L D ++VG + G+SGGQR+R+ + +V P +L+ D
Sbjct: 108 VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFD 166
Query: 668 EPTS 671
E TS
Sbjct: 167 EATS 170
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 88/184 (47%), Gaps = 29/184 (15%)
Query: 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
+++F+++ K + +L + I+ G + ++G SG+GK+T + + G
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENG 64
Query: 561 LILINGKNEPIHS---YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLV 617
+LI+G + + ++ +G V QD+++ N ++ +N+ A+ +
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISL------------ANPGMS 111
Query: 618 IERVIDTLGLQTVRD----------SLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLD 667
+E+VI L D ++VG + G+SGGQR+R+ + +V P +L+ D
Sbjct: 112 VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFD 170
Query: 668 EPTS 671
+ TS
Sbjct: 171 QATS 174
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 502 VSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
V F+D++ N +L+ +T + PG++TA++GP+G+GK+T + L + + G
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGG 74
Query: 561 LILINGKNEPI-----HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKV 615
+L++G EP+ H + V Q+ ++ G + EN+ + + + + V
Sbjct: 75 KVLLDG--EPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYG--LTRTPTMEEITAV 129
Query: 616 LVIERVIDTL-GLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+ D + G D+ VG + +SGGQR+ V + ++ +P LL+LD TS
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATS 185
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 531 ITAVMGPSGAGKTTFLSALA------GKAIACKA--TGLILINGKNEPIHSYK-KIIGFV 581
+TA++G S +GK+T + A+ G+ ++ + G L+ + E + + K I V
Sbjct: 36 VTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALV 95
Query: 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKR 641
PQ +L + H + + AH + +IE+ + L + + V
Sbjct: 96 PQA--AQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEAVLNSYPL 153
Query: 642 GISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672
+SGG ++RV + L ++++P +L+LDEPTS
Sbjct: 154 QLSGGMKQRVLIALALLLDPVVLILDEPTSA 184
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 36/197 (18%)
Query: 489 ATNTEVR----KRPLIEVSFKDLTLTLKGKNK----------HLLRCVTGKIRPGRITAV 534
A N ++R K L EVS DL+ LK K K L G+ + G I +
Sbjct: 240 AENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGI 299
Query: 535 MGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVE 594
+GP+G GKTTF L G+ A + + + K+I+ + PQ + + TV+
Sbjct: 300 LGPNGIGKTTFARILVGEITADEGS-----------VTPEKQILSYKPQRIFPNYDGTVQ 348
Query: 595 ENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVG 654
+ L ++ LS E V L L + +S V +SGG+ +++++
Sbjct: 349 QYLENASKDALSTS------SWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIA 397
Query: 655 LEMVMEPSLLLLDEPTS 671
+ E L +LD+P+S
Sbjct: 398 ATLAKEADLYVLDQPSS 414
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 531 ITAVMGPSGAGKTTFLSALAGKAI-------ACKATGLILINGKNEPIHSYKKIIGFVPQ 583
I V+G +G GKTT L LAG+ I + +L + + I++Y K + + +
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL-YSNE 85
Query: 584 DDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV--RDSLVGTVEKR 641
IVH VE F + ++ L K D+ + V + L + + +D+ +
Sbjct: 86 LKIVHKIQYVEYASKF-LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI------ 138
Query: 642 GISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+SGG +R+ V ++ E + + D+P+S
Sbjct: 139 -LSGGGLQRLLVAASLLREADVYIFDQPSS 167
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 24/183 (13%)
Query: 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
++ F+++T T G+ LR + KI G+ A++G SG+GK+T S + G
Sbjct: 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEG 398
Query: 561 LILING---KNEPIHSYKKIIGFVPQDDIVH-GNLTVEENLWF-----HARCRLSAHLAK 611
IL++G + + S + + V Q+ VH N TV N+ + ++R ++
Sbjct: 399 HILMDGHDLREYTLASLRNQVALVSQN--VHLFNDTVANNIAYARTEEYSREQIEEAARM 456
Query: 612 ADKVLVIERVIDTLGLQTVRDSLVGTVEKRGI--SGGQRKRVHVGLEMVMEPSLLLLDEP 669
A + I ++ + L D+++G + G+ SGGQR+R+ + ++ + +L+LDE
Sbjct: 457 AYAMDFINKMDNGL------DTIIG---ENGVLLSGGQRQRIAIARALLRDSPILILDEA 507
Query: 670 TSG 672
TS
Sbjct: 508 TSA 510
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 36/210 (17%)
Query: 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKI 577
+L+ V+ + R G + +++G SG+GK+TFL + + + G I++NG+N
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCI--NFLEKPSEGAIIVNGQN--------- 69
Query: 578 IGFVPQDDIVHGNLTV-EENLWFHARCRLS---AHLAKADKVLVIERV----IDTLGL-- 627
I V D G L V ++N R RL+ H + V+E V I LGL
Sbjct: 70 INLVRDKD---GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 126
Query: 628 QTVRDSLVGTVEKRGI------------SGGQRKRVHVGLEMVMEPSLLLLDEPTSGXXX 675
R+ + + K GI SGGQ++RV + + MEP +LL DEPTS
Sbjct: 127 HDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP 186
Query: 676 XXXXXXXXXXXXXXXEGVNICLVVHQPSYA 705
EG + +V H+ +A
Sbjct: 187 ELVGEVLRIMQQLAEEGKTMVVVTHEMGFA 216
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 11/174 (6%)
Query: 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGL 561
VSF+++ +L V ++PG + AV+G +G+GK+T ++ L + I + +
Sbjct: 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMN-LIPRLIDPERGRV 400
Query: 562 IL--INGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIE 619
+ ++ + + + I VPQ+ ++ T++ENL + + +A K+ I
Sbjct: 401 EVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIH 459
Query: 620 RVIDTLGLQTVRDSLVGTVEK--RGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
I + L DS VE+ R SGGQ++R+ + +V +P +L+LD+ TS
Sbjct: 460 DFI--ISLPEGYDS---RVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTS 508
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 15/207 (7%)
Query: 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYK 575
K L V+ I G V G +G+GK+T L +AG + +G +L +G+ + + +
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG--LIEPTSGDVLYDGERKKGYEIR 79
Query: 576 KIIGFV---PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRD 632
+ IG P+D E ++ + D V ++++ ++ +GL D
Sbjct: 80 RNIGIAFQYPEDQFF------AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF--D 131
Query: 633 SLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGXXXXXXXXXXXXXXXXXXEG 692
S V +SGG+++RV + +V EP +L+LDEP G G
Sbjct: 132 SFKDRV-PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 190
Query: 693 VNICLVVHQPSYALFRMFDDLVLLAKG 719
+ L+ H + D +V+L KG
Sbjct: 191 KTVILISHDIE-TVINHVDRVVVLEKG 216
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 15/207 (7%)
Query: 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYK 575
K L V+ I G V G +G+GK+T L +AG + +G +L +G+ + + +
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG--LIEPTSGDVLYDGERKKGYEIR 77
Query: 576 KIIGFV---PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRD 632
+ IG P+D E ++ + D V ++++ ++ +GL D
Sbjct: 78 RNIGIAFQYPEDQFF------AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF--D 129
Query: 633 SLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGXXXXXXXXXXXXXXXXXXEG 692
S V +SGG+++RV + +V EP +L+LDEP G G
Sbjct: 130 SFKDRV-PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 188
Query: 693 VNICLVVHQPSYALFRMFDDLVLLAKG 719
+ L+ H + D +V+L KG
Sbjct: 189 KTVILISHDIE-TVINHVDRVVVLEKG 214
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 91/198 (45%), Gaps = 27/198 (13%)
Query: 487 SMATNTEVRKRPLI----EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGK 542
S+ N+ V+K + +++ KDLT +L ++ I PG+ ++G +G+GK
Sbjct: 1 SLIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGK 60
Query: 543 TTFLSALAGKAIACKATGLILING---KNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWF 599
+T LSA G I I+G + + ++K G +PQ +
Sbjct: 61 STLLSAFLR---LLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTF------- 110
Query: 600 HARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISG------GQRKRVHV 653
R L + A +D+ I +V D +GL++V + G ++ + G G ++ + +
Sbjct: 111 --RKNLDPNAAHSDQ--EIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCL 166
Query: 654 GLEMVMEPSLLLLDEPTS 671
++ + +LLLDEP++
Sbjct: 167 ARSVLSKAKILLLDEPSA 184
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 20/170 (11%)
Query: 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
++ +DL++ G +K +L +T I G + GP+G GKTT L ++ K G
Sbjct: 10 KLEIRDLSV---GYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK--G 64
Query: 561 LILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIER 620
I+ NG PI K I F+P++ IV ++VE+ L + S + K +K
Sbjct: 65 EIIYNGV--PITKVKGKIFFLPEEIIVPRKISVEDYL----KAVASLYGVKVNK----NE 114
Query: 621 VIDTLGLQTVRDSLVGTVEKRG-ISGGQRKRVHVGLEMVMEPSLLLLDEP 669
++D L V D +K G +S G +RV + +++ + +LD+P
Sbjct: 115 IMDALESVEVLD----LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP 160
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 23/182 (12%)
Query: 502 VSFKDLTLTLKGKNK--HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKAT 559
+ K++T T K + + L+ V I+ G ++MGPSG+GK+T L+ + +
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG--CLDKPTE 59
Query: 560 GLILING-------KNEPIHSYKKIIGFVPQDDIVHGNLTVEEN----LWFHARCRLSAH 608
G + I+ +E + IGFV Q + LT EN L F R +S
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 609 LAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDE 668
+ +R ++ L + + + + +SGGQ++RV + + P ++L D+
Sbjct: 120 ERR-------KRALECLKMAELEERFANH-KPNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 669 PT 670
PT
Sbjct: 172 PT 173
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 25/169 (14%)
Query: 514 KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGK------ 567
+N +L ++ + PG I ++G SG GKTT L LAG +G I ++GK
Sbjct: 15 QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG--FEQPDSGEISLSGKTIFSKN 72
Query: 568 -NEPIHSYKKIIGFVPQDDIVHGNLTVEENLWF---HARCRLSAHLAKADKVLVIERVID 623
N P+ + +G++ Q+ ++ +LTV N+ + + + R + + IE +++
Sbjct: 73 TNLPVRERR--LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR------IEAMLE 124
Query: 624 TLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672
G+ L G +SGGQ++R + + +P L+LLDEP S
Sbjct: 125 LTGIS----ELAGRYPHE-LSGGQQQRAALARALAPDPELILLDEPFSA 168
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 522 VTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN----EPIHSYKKI 577
V+ + G +T ++GP+G+GK+T ++ + G A G + K+ EP Y
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDITNKEPAELYHYG 83
Query: 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHL----------AKADKVLVIERVIDTLGL 627
I Q +TV ENL C + L + + V ++++ L L
Sbjct: 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL 143
Query: 628 QTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672
+ D G +SGGQ K V +G ++ P ++++DEP +G
Sbjct: 144 SHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 24/153 (15%)
Query: 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKII 578
L G+IR G + ++GP+G GKTTF+ LAG + E + +
Sbjct: 358 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG------------VEEPTEGKVEWDLTV 405
Query: 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTV 638
+ PQ TV E L +L+++ K + ++ LG+ + D V
Sbjct: 406 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDRNV--- 455
Query: 639 EKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+SGG+ +RV + ++ + + LLDEP++
Sbjct: 456 --EDLSGGELQRVAIAATLLRDADIYLLDEPSA 486
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 526 IRPGRITAVMGPSGAGKTTFLSALAGKAI 554
++ G + ++GP+G GKTT + LAG+ I
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLI 128
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 24/153 (15%)
Query: 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKII 578
L G+IR G + ++GP+G GKTTF+ LAG + E + +
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG------------VEEPTEGKVEWDLTV 419
Query: 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTV 638
+ PQ TV E L +L+++ K + ++ LG+ + D V
Sbjct: 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDRNV--- 469
Query: 639 EKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+SGG+ +RV + ++ + + LLDEP++
Sbjct: 470 --EDLSGGELQRVAIAATLLRDADIYLLDEPSA 500
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 526 IRPGRITAVMGPSGAGKTTFLSALAGKAI 554
++ G + ++GP+G GKTT + LAG+ I
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLI 142
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 17/195 (8%)
Query: 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKI 577
+L+ ++ ++ G +++G SG+GK+T L L + G + + GK + K++
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 578 -------IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV 630
+GFV Q + LT EN+ L K + E ++ LGL
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPM---LKMGKPKKEAKERGEYLLSELGLG-- 131
Query: 631 RDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGXXXXXXXXXXXXXXXXXX 690
D L + + +SGG+++RV + + EP LL DEPT
Sbjct: 132 -DKL--SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 691 EGVNICLVVHQPSYA 705
G +I +V H+ A
Sbjct: 189 GGTSIVMVTHERELA 203
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 88/177 (49%), Gaps = 15/177 (8%)
Query: 502 VSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
V F+D++ N +L+ +T + PG++TA++GP+G+GK+T + L + + G
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGG 74
Query: 561 LILINGKNEPI-----HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKV 615
+L++G EP+ H + V Q+ ++ G + EN+ + + + + V
Sbjct: 75 KVLLDG--EPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYG--LTRTPTMEEITAV 129
Query: 616 LVIERVIDTL-GLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+ D + G D+ VG + ++ GQR+ V + ++ +P LL+LD TS
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQ-LAVGQRQAVALARALIRKPRLLILDNATS 185
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 23/182 (12%)
Query: 502 VSFKDLTLTLKGKNK--HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKAT 559
V K++T T K + + L+ V I+ G ++MGPSG+GK+T L+ + +
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG--CLDKPTE 59
Query: 560 GLILING-------KNEPIHSYKKIIGFVPQDDIVHGNLTVEEN----LWFHARCRLSAH 608
G + I+ +E + IGFV Q + LT EN L F R +S
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 609 LAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDE 668
+ +R ++ L + + + + +SGGQ++RV + + P ++L D+
Sbjct: 120 ERR-------KRALECLKMAELEERFANH-KPNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 669 PT 670
PT
Sbjct: 172 PT 173
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 24/153 (15%)
Query: 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKII 578
L G+I+ G + ++GP+G GKTTF+ LAG + E + +
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAG------------VEEPTEGKIEWDLTV 349
Query: 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTV 638
+ PQ TV E L +L+++ K + ++ LG+ + D V
Sbjct: 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTE-------LLKPLGIIDLYDREVNE- 401
Query: 639 EKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+SGG+ +RV + ++ + + LLDEP++
Sbjct: 402 ----LSGGELQRVAIAATLLRDADIYLLDEPSA 430
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 44/219 (20%)
Query: 526 IRPGRITAVMGPSGAGKTTFLSALAGKAIA--CKAT----GLI--------------LIN 565
++ G + ++GP+G GK+T + LAG+ I C G+I L N
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 566 GKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTL 625
G+ P+ + + +P+ + ++ L KAD+ +E V+ L
Sbjct: 104 GEIRPVVK-PQYVDLIPK----------------AVKGKVIELLKKADETGKLEEVVKAL 146
Query: 626 GLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGXXXXXXXXXXXXX 685
L+ V + E + +SGG+ +RV + ++ + DEP+S
Sbjct: 147 ELENVLER-----EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAI 201
Query: 686 XXXXXEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVY 724
EG ++ +V H A+ D++ + G VY
Sbjct: 202 RRLSEEGKSVLVVEH--DLAVLDYLSDIIHVVYGEPGVY 238
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 26/165 (15%)
Query: 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN------EPIH 572
L V+ + G+I V+G SGAGK+T + + + G +L++G+ +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSESELT 78
Query: 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRD 632
++ IG + Q H NL ++ L L K V RV + L
Sbjct: 79 KARRQIGMIFQ----HFNLLSSRTVF--GNVALPLELDNTPKDEVKRRVTELL------- 125
Query: 633 SLVGTVEKR-----GISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672
SLVG +K +SGGQ++RV + + P +LL DE TS
Sbjct: 126 SLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA 170
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 37/181 (20%)
Query: 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGL 561
+S ++L + +N L + + + G I AV+G +G GK+T L L G
Sbjct: 5 LSVENLGFYYQAEN-FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP------ 57
Query: 562 ILINGKNEPIHSYKKIIGFVPQD----------DIVHGNLTVEENLWFHARCRLSAHLAK 611
I GK E S IGFVPQ DIV + N + A+ K
Sbjct: 58 --IQGKIEVYQS----IGFVPQFFSSPFAYSVLDIVLMGRSTHINTF--AK-------PK 102
Query: 612 ADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
+ V + +D L L + + E +SGGQR+ + + + E L+LLDEPTS
Sbjct: 103 SHDYQVAMQALDYLNL-----THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157
Query: 672 G 672
Sbjct: 158 A 158
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 26/165 (15%)
Query: 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN------EPIH 572
L V+ + G+I V+G SGAGK+T + + + G +L++G+ +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSESELT 101
Query: 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRD 632
++ IG + Q H NL ++ L L K V RV + L
Sbjct: 102 KARRQIGMIFQ----HFNLLSSRTVF--GNVALPLELDNTPKDEVKRRVTELL------- 148
Query: 633 SLVGTVEKR-----GISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672
SLVG +K +SGGQ++RV + + P +LL D+ TS
Sbjct: 149 SLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 23/182 (12%)
Query: 502 VSFKDLTLTLKGKNK--HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKAT 559
+ K++T T K + + L+ V I+ G ++ GPSG+GK+T L+ + +
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIG--CLDKPTE 59
Query: 560 GLILING-------KNEPIHSYKKIIGFVPQDDIVHGNLTVEEN----LWFHARCRLSAH 608
G + I+ +E + IGFV Q + LT EN L F R S
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE 119
Query: 609 LAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDE 668
+ +R ++ L + + + +SGGQ++RV + + P ++L DE
Sbjct: 120 ERR-------KRALECLKXAELEERFANH-KPNQLSGGQQQRVAIARALANNPPIILADE 171
Query: 669 PT 670
PT
Sbjct: 172 PT 173
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 499 LIEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKA 558
+I++ +TL+ KG + L + ++ G ++GP+G+GKTT L A++G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG---LLPY 56
Query: 559 TGLILINGKN-EPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLV 617
+G I ING I +Y + +P+ + +TV + ++ L L D+ L
Sbjct: 57 SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVY------LYEELKGLDRDLF 108
Query: 618 IERVID-TLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP 669
+E + LG + +R L +S GQ V L + +P ++ LDEP
Sbjct: 109 LEMLKALKLGEEILRRKLY------KLSAGQSVLVRTSLALASQPEIVGLDEP 155
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGL 561
++ ++ T T + L +T I G + AV+G G GK++ LSAL + K G
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE--MDKVEGH 61
Query: 562 ILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERV 621
+ I G + +VPQ + N ++ EN+ F C+L ++ VI+
Sbjct: 62 VAIKGS----------VAYVPQQAWIQ-NDSLRENILFG--CQLEEPYYRS----VIQAC 104
Query: 622 IDTLGLQTVRDSLVGTVEKRGI--SGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
L+ + + ++G+ SGGQ++RV + + + L D+P S
Sbjct: 105 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 26/165 (15%)
Query: 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN------EPIH 572
L V+ + G+I V+G SGAGK+T + + + G +L++G+ +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSESELT 101
Query: 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRD 632
++ IG + Q H NL ++ L L K V RV + L
Sbjct: 102 KARRQIGXIFQ----HFNLLSSRTVF--GNVALPLELDNTPKDEVKRRVTELL------- 148
Query: 633 SLVGTVEKR-----GISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672
SLVG +K +SGGQ++RV + + P +LL D+ TS
Sbjct: 149 SLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 21/158 (13%)
Query: 529 GRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN----EPIHSYKKIIGFVPQD 584
G +T ++GP+G+GK+T ++ + G A G + K+ EP Y I Q
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDITNKEPAELYHYGIVRTFQT 90
Query: 585 DIVHGNLTVEENLWFH----ARCRLSAHLAKA------DKVLVIERVIDTLGLQTVRDSL 634
+TV ENL L++ K + V ++++ L L + D
Sbjct: 91 PQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150
Query: 635 VGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672
G +SGGQ K V +G ++ P ++++DEP +G
Sbjct: 151 AGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 522 VTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN----EPIHSYKKI 577
V+ + G +T ++GP+G+GK+T ++ + G A G + K+ EP Y
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDITNKEPAELYHYG 83
Query: 578 IGFVPQDDIVHGNLTVEENLWFH----ARCRLSAHLAKA------DKVLVIERVIDTLGL 627
I Q +TV ENL L++ K + V ++++ L L
Sbjct: 84 IVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL 143
Query: 628 QTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672
+ D G +SGGQ K V +G ++ P ++++D+P +G
Sbjct: 144 SHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDQPIAG 183
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 90/202 (44%), Gaps = 37/202 (18%)
Query: 494 VRKRPLIEVSFKDLTLTLKGKNKHLLRCVTGKI------RPGRITAVMGPSGAGKTTFLS 547
V+K P + +L L+ H + K+ RPG++ ++G +G GK+T L
Sbjct: 62 VKKCPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALK 121
Query: 548 ALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIV-HGNLTVEENLWFHARCRLS 606
LAGK + L G+ + +++II + ++ + +E+++ + +
Sbjct: 122 ILAGK----QKPNL----GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYV 173
Query: 607 AHLAKADKVLV-----------------IERVIDTLGLQTVRDSLVGTVEKRGISGGQRK 649
++ +A K V ++R I L L+ V L +EK +SGG+ +
Sbjct: 174 DNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENV---LKRDIEK--LSGGELQ 228
Query: 650 RVHVGLEMVMEPSLLLLDEPTS 671
R +G+ V E + + DEP+S
Sbjct: 229 RFAIGMSCVQEADVYMFDEPSS 250
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 28/162 (17%)
Query: 512 KGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI 571
K + +L G+ I +MG +G GKTT + LAG + + +N +P
Sbjct: 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQ 420
Query: 572 HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKAD--KVLVIERVIDTLGLQT 629
K G TV + + R + + D K L I+ +ID
Sbjct: 421 KIAPKFPG------------TVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQ----- 463
Query: 630 VRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
E + +SGG+ +RV + L + + + L+DEP++
Sbjct: 464 ---------EVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 22/217 (10%)
Query: 522 VTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581
++G++R G I ++GP+GAGK+T L+ +AG G I G +P+ ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGKGSIQFAG--QPLEAWS-----A 68
Query: 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKR 641
+ + L+ ++ F L + DK E + D G + D L + +
Sbjct: 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRT-ELLNDVAGALALDDKLGRSTNQ- 126
Query: 642 GISGGQRKRVHVG---LEMVMEPS----LLLLDEPTSGXXXXXXXXXXXXXXXXXXEGVN 694
+SGG+ +RV + L++ + + LLLLD+P + +G+
Sbjct: 127 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLA 185
Query: 695 ICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731
I + H ++ L +L KGG + G ++V
Sbjct: 186 IVMSSHDLNHTLRHAHRAWLL--KGGKMLASGRREEV 220
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
EV +++T + +L+ + KI G++ AV G +GAGKT+ L + G+ + G
Sbjct: 18 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE--G 75
Query: 561 LILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHA--RCRLSAHLAKADKVLVI 618
I +G+ + I+ +++I+ G ++ +E + C+L ++K +
Sbjct: 76 KIKHSGRISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAE---- 130
Query: 619 ERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP 669
+D++V +SGGQR R+ + + + L LLD P
Sbjct: 131 ------------KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 169
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 21/154 (13%)
Query: 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKI 577
+L+ + KI G++ AV G +GAGKT+ L + G+ + G I +G+ + I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE--GKIKHSGRISFCSQFSWI 110
Query: 578 IGFVPQDDIVHGNLTVEENLWFHA--RCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLV 635
+ +++I+ G ++ +E + C+L ++K + +D++V
Sbjct: 111 MPGTIKENIIAG-VSYDEYRYRSVIKACQLEEDISKFAE----------------KDNIV 153
Query: 636 GTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP 669
+SGGQR R+ + + + L LLD P
Sbjct: 154 LGEGGITLSGGQRARISLARAVYKDADLYLLDSP 187
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 22/217 (10%)
Query: 522 VTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581
++G++R G I ++GP+GAGK+T L+ +AG G I G +P+ ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGKGSIQFAG--QPLEAWS-----A 68
Query: 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKR 641
+ + L+ ++ F L + DK E + D G + D L + +
Sbjct: 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRT-ELLNDVAGALALDDKLGRSTNQ- 126
Query: 642 GISGGQRKRVHVG---LEMVMEPS----LLLLDEPTSGXXXXXXXXXXXXXXXXXXEGVN 694
+SGG+ +RV + L++ + + LLLLD+P +G+
Sbjct: 127 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLA 185
Query: 695 ICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731
I + H ++ L +L KGG + G ++V
Sbjct: 186 IVMSSHDLNHTLRHAHRAWLL--KGGKMLASGRREEV 220
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
EV +++T + +L+ + KI G++ AV G +GAGKT+ L + G+ + G
Sbjct: 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE--G 63
Query: 561 LILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHA--RCRLSAHLAKADKVLVI 618
I +G+ + I+ +++I+ G ++ +E + C+L ++K +
Sbjct: 64 KIKHSGRISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAE---- 118
Query: 619 ERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP 669
+D++V +SGGQR R+ + + + L LLD P
Sbjct: 119 ------------KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 38.1 bits (87), Expect = 0.030, Method: Composition-based stats.
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 22/217 (10%)
Query: 522 VTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581
++G++R G I ++GP+GAGK+T L+ AG G I G +P+ ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXT---SGKGSIQFAG--QPLEAWS-----A 68
Query: 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKR 641
+ + L+ ++ F L + DK E + D G + D L + +
Sbjct: 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRT-ELLNDVAGALALDDKLGRSTNQ- 126
Query: 642 GISGGQRKRVHVG---LEMVMEPS----LLLLDEPTSGXXXXXXXXXXXXXXXXXXEGVN 694
+SGG+ +RV + L++ + + LLLLDEP + +G+
Sbjct: 127 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLA 185
Query: 695 ICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731
I H ++ L +L KGG + G ++V
Sbjct: 186 IVXSSHDLNHTLRHAHRAWLL--KGGKXLASGRREEV 220
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 21/168 (12%)
Query: 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGL 561
VSF L L +L+ + I G + A+ G +G+GKT+ L + G+ A + G+
Sbjct: 41 VSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GI 94
Query: 562 ILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERV 621
I +G+ + I+ +++I+ G ++ +E + + + A + D E+
Sbjct: 95 IKHSGRVSFCSQFSWIMPGTIKENIIRG-VSYDE---YRYKSVVKACQLQQDITKFAEQD 150
Query: 622 IDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP 669
LG V +SGGQR R+ + + + L LLD P
Sbjct: 151 NTVLGEGGVT-----------LSGGQRARISLARAVYKDADLYLLDSP 187
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 21/168 (12%)
Query: 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGL 561
VSF L L +L+ + I G + A+ G +G+GKT+ L + G+ A + G+
Sbjct: 41 VSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GI 94
Query: 562 ILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERV 621
I +G+ + I+ +++I+ G ++ +E + + + A + D E+
Sbjct: 95 IKHSGRVSFCSQFSWIMPGTIKENIISG-VSYDE---YRYKSVVKACQLQQDITKFAEQD 150
Query: 622 IDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP 669
LG V +SGGQR R+ + + + L LLD P
Sbjct: 151 NTVLGEGGVT-----------LSGGQRARISLARAVYKDADLYLLDSP 187
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 21/168 (12%)
Query: 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGL 561
VSF L L +L+ + I G + A+ G +G+GKT+ L + G+ A + G+
Sbjct: 41 VSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GI 94
Query: 562 ILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERV 621
I +G+ + I+ +++I+ G ++ +E + + + A + D E+
Sbjct: 95 IKHSGRVSFCSQFSWIMPGTIKENIIFG-VSYDE---YRYKSVVKACQLQQDITKFAEQD 150
Query: 622 IDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP 669
LG V +SGGQR R+ + + + L LLD P
Sbjct: 151 NTVLGEGGVT-----------LSGGQRARISLARAVYKDADLYLLDSP 187
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 30/158 (18%)
Query: 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKI 577
+L+ + KI G++ AV G +GAGKT+ L++I G+ EP S KI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSL---------------LMMIMGELEP--SEGKI 95
Query: 578 -----IGFVPQDD-IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVR 631
I F Q+ I+ G T++EN+ +S + V+ ++ + + +
Sbjct: 96 KHSGRISFCSQNSWIMPG--TIKENI-----IGVSYDEYRYRSVIKACQLEEDISKFAEK 148
Query: 632 DSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP 669
D++V +SGGQR R+ + + + L LLD P
Sbjct: 149 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 37.4 bits (85), Expect = 0.043, Method: Composition-based stats.
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 22/217 (10%)
Query: 522 VTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581
++G++R G I ++GP+GAGK+T L+ AG G I G +P+ ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXT---SGKGSIQFAG--QPLEAWS-----A 68
Query: 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKR 641
+ + L+ ++ F L + DK E + D G + D L + +
Sbjct: 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRT-ELLNDVAGALALDDKLGRSTNQ- 126
Query: 642 GISGGQRKRVHVG---LEMVMEPS----LLLLDEPTSGXXXXXXXXXXXXXXXXXXEGVN 694
+SGG+ +RV + L++ + + LLLLDEP + +G+
Sbjct: 127 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLA 185
Query: 695 ICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731
I H ++ L +L KGG + G ++V
Sbjct: 186 IVXSSHDLNHTLRHAHRAWLL--KGGKXLASGRREEV 220
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 30/158 (18%)
Query: 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKI 577
+L+ + KI G++ AV G +GAGKT+ L++I G+ EP S KI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSL---------------LMMIMGELEP--SEGKI 95
Query: 578 -----IGFVPQDD-IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVR 631
I F Q+ I+ G T++EN+ +S + V+ ++ + + +
Sbjct: 96 KHSGRISFCSQNSWIMPG--TIKENI-----IGVSYDEYRYRSVIKACQLEEDISKFAEK 148
Query: 632 DSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP 669
D++V +SGGQR R+ + + + L LLD P
Sbjct: 149 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 21/168 (12%)
Query: 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGL 561
VSF L L +L+ + I G + A+ G +G+GKT+ L + G+ A + G+
Sbjct: 41 VSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GI 94
Query: 562 ILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERV 621
I +G+ + I+ +++I+ G ++ +E + + + A + D E+
Sbjct: 95 IKHSGRVSFCSQFSWIMPGTIKENIIFG-VSYDE---YRYKSVVKACQLQQDITKFAEQD 150
Query: 622 IDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP 669
LG V +SGGQR R+ + + + L LLD P
Sbjct: 151 NTVLGEGGVT-----------LSGGQRARISLARAVYKDADLYLLDSP 187
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 36.6 bits (83), Expect = 0.090, Method: Composition-based stats.
Identities = 70/273 (25%), Positives = 108/273 (39%), Gaps = 64/273 (23%)
Query: 514 KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHS 573
+ + L+ V+ I G + A++GP+GAGK+T L L+ G P H
Sbjct: 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLR---------------LLTGYLSPSHG 66
Query: 574 YKKIIGFVPQDDIVHGNLTVEENLW-------FHARCRLSAHLA---KADKVLVIERV-- 621
++G NL N W A R + LA +V+ + R
Sbjct: 67 ECHLLG---------QNL----NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY 113
Query: 622 ---IDTLGLQTV---RDSL-VGTVEKRGISGGQRKRVHVGLEMVM------EPSLLLLDE 668
D LQ V D L + + R +SGG+++RV + + P L LDE
Sbjct: 114 GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDE 173
Query: 669 PTSGX-XXXXXXXXXXXXXXXXXEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727
PTS E + +C V+H + A D ++LLA+G L V G+
Sbjct: 174 PTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYA-DRIMLLAQGKL-VACGT 231
Query: 728 VKKV-------EEYFAGLGINV-PERVNPPDHL 752
++V + Y A LG++ PE P +L
Sbjct: 232 PEEVLNAETLTQWYQADLGVSRHPESALPQIYL 264
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 35/177 (19%)
Query: 514 KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHS 573
+ K +L+ ++ +I G + G +GAGKTT L+ L A +G + + GK
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNIL--NAYEPATSGTVNLFGKX----- 84
Query: 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVL--VIERVIDTLGL-QTV 630
+G+ + TV +++ F + L + ++V+ VI ++G+ Q +
Sbjct: 85 -PGKVGYSAE--------TVRQHIGFVSHSLLE-KFQEGERVIDVVISGAFKSIGVYQDI 134
Query: 631 RDS----------LVGTVEKRG-----ISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672
D LVG K +S G+++RV + + +P +L+LDEP +G
Sbjct: 135 DDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAG 191
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 18/169 (10%)
Query: 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
EV +++T + +L+ + KI G++ AV G +GAGKT+ L + G+ + G
Sbjct: 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE--G 63
Query: 561 LILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIER 620
I +G+ + I+ +++I+ + C+L ++K +
Sbjct: 64 KIKHSGRISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAE------ 117
Query: 621 VIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP 669
+D++V +SGGQR R+ + + + L LLD P
Sbjct: 118 ----------KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 156
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 22/168 (13%)
Query: 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGL 561
VSF L L +L+ + I G + A+ G +G+GKT+ L + G+ A + G+
Sbjct: 41 VSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GI 94
Query: 562 ILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERV 621
I +G+ + I+ +++I+ ++ +E + + + A + D E+
Sbjct: 95 IKHSGRVSFCSQFSWIMPGTIKENII--GVSYDE---YRYKSVVKACQLQQDITKFAEQD 149
Query: 622 IDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP 669
LG V +SGGQR R+ + + + L LLD P
Sbjct: 150 NTVLGEGGVT-----------LSGGQRARISLARAVYKDADLYLLDSP 186
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 509 LTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACK 557
L + G +H L+ V+ KI G AV G SG+GK+T ++ + KA+A K
Sbjct: 630 LEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQK 678
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 509 LTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACK 557
L + G +H L+ V+ KI G AV G SG+GK+T ++ + KA+A K
Sbjct: 630 LEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQK 678
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 509 LTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACK 557
L + G +H L+ V+ KI G AV G SG+GK+T ++ + KA+A K
Sbjct: 328 LEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQK 376
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 509 LTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN 568
LT+ G +H LR + G +T+V G SG+GK+T ++ + +A + G + G++
Sbjct: 648 LTVVGAREHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRH 707
>pdb|2IFU|A Chain A, Crystal Structure Of A Gamma-Snap From Danio Rerio
pdb|2IFU|B Chain B, Crystal Structure Of A Gamma-Snap From Danio Rerio
pdb|2IFU|C Chain C, Crystal Structure Of A Gamma-Snap From Danio Rerio
pdb|2IFU|D Chain D, Crystal Structure Of A Gamma-Snap From Danio Rerio
Length = 307
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 369 QHPEKLKILNQAESRTDEDLYPTSDSSTWNASLPPLAPSKGMKKEPGDLMKMMHEIEDNP 428
+ PE ++ + +A E+ P + + + + G EP DL K +H +
Sbjct: 91 RXPEAVQYIEKASVXYVENGTPDTAAXALDRA--------GKLXEPLDLSKAVHLYQQAA 142
Query: 429 DSYEGFDVELRDVKTKEHMSKGKDLSTHSQIFNYAYAQLEKEKALQQENKN 479
+E E R + E + K L Q F+ A A L+KEK+ +E +N
Sbjct: 143 AVFEN---EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSXYKEXEN 190
>pdb|3UPU|A Chain A, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
pdb|3UPU|B Chain B, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
pdb|3UPU|C Chain C, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
Length = 459
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 21/117 (17%)
Query: 503 SFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLI 562
+F DLT K + + + K + +T + GP+G G TT + I+ TG+I
Sbjct: 22 TFDDLTEGQKNAFNIVXKAI--KEKKHHVT-INGPAGTGATTLTKFIIEALISTGETGII 78
Query: 563 LINGKNEPIHSYKKIIGFVP--QDDIVHGNL-----TVEENLWFH-------ARCRL 605
L P H+ KKI+ + + +H L T EEN+ F A+CR+
Sbjct: 79 LA----APTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRV 131
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 618 IERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
IE LGL +V RG+SGGQ+ ++ + P L++LDEPT+
Sbjct: 880 IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 930
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 533 AVMGPSGAGKTTFLSALAGK 552
AV+GP+GAGK+T ++ L G+
Sbjct: 703 AVIGPNGAGKSTLINVLTGE 722
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGK 552
+L+ + KI G++ AV G +GAGKT+ L + G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGK 552
+L+ + KI G++ AV G +GAGKT+ L + G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 618 IERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
IE LGL +V RG+SGGQ+ ++ + P L++LDEPT+
Sbjct: 874 IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 924
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 533 AVMGPSGAGKTTFLSALAGK 552
AV+GP+GAGK+T ++ L G+
Sbjct: 697 AVIGPNGAGKSTLINVLTGE 716
>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
Length = 366
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 524 GKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG 560
G I GRIT + GP GKTT ALA A A KA G
Sbjct: 69 GGIPRGRITEIYGPESGGKTTL--ALAIVAQAQKAGG 103
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 618 IERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671
IE LGL +V RG+SGGQ+ ++ + P L++LDEPT+
Sbjct: 880 IEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 930
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 533 AVMGPSGAGKTTFLSALAGK 552
AV+GP+GAGK+T ++ L G+
Sbjct: 703 AVIGPNGAGKSTLINVLTGE 722
>pdb|2K3A|A Chain A, Nmr Solution Structure Of Staphylococcus Saprophyticus
Chap (Cysteine, Histidine-Dependent
AmidohydrolasesPEPTIDASES) Domain Protein. Northeast
Structural Genomics Consortium Target Syr11
Length = 155
Score = 29.6 bits (65), Expect = 9.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 203 STGTCEPYNYQLPSGRLNHTCGGANIWADVASS 235
+ G C Y Y G + T G AN WA ASS
Sbjct: 53 TAGQCTWYVYDKVGGNIGSTWGNANNWASAASS 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,732,193
Number of Sequences: 62578
Number of extensions: 1236333
Number of successful extensions: 3005
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2770
Number of HSP's gapped (non-prelim): 172
length of query: 1111
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1002
effective length of database: 8,152,335
effective search space: 8168639670
effective search space used: 8168639670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)