Query 001270
Match_columns 1111
No_of_seqs 624 out of 3655
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 20:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 2.3E-86 4.9E-91 802.4 55.5 563 498-1111 22-611 (613)
2 PLN03211 ABC transporter G-25; 100.0 2.5E-82 5.5E-87 773.7 61.1 560 504-1108 71-658 (659)
3 TIGR00955 3a01204 The Eye Pigm 100.0 6.9E-82 1.5E-86 767.3 52.5 551 515-1111 37-616 (617)
4 PLN03140 ABC transporter G fam 100.0 1.8E-78 3.9E-83 787.1 57.8 562 499-1111 865-1469(1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 5.4E-77 1.2E-81 775.0 58.6 561 500-1110 758-1392(1394)
6 TIGR00956 3a01205 Pleiotropic 100.0 2.1E-75 4.5E-80 760.2 54.7 562 515-1108 73-694 (1394)
7 PLN03140 ABC transporter G fam 100.0 1.7E-74 3.6E-79 750.2 51.9 553 516-1108 178-789 (1470)
8 KOG0065 Pleiotropic drug resis 100.0 1.3E-74 2.8E-79 712.4 34.1 556 502-1109 788-1384(1391)
9 KOG0065 Pleiotropic drug resis 100.0 5.2E-62 1.1E-66 601.1 41.4 554 515-1108 127-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 1.2E-51 2.6E-56 430.8 24.2 218 501-731 2-223 (240)
11 COG1125 OpuBA ABC-type proline 100.0 2E-47 4.3E-52 405.9 22.7 228 502-756 2-235 (309)
12 COG1135 AbcC ABC-type metal io 100.0 3.1E-47 6.8E-52 414.8 22.3 218 502-731 2-229 (339)
13 COG3839 MalK ABC-type sugar tr 100.0 2.8E-46 6.1E-51 419.7 24.6 219 500-732 2-222 (338)
14 COG1127 Ttg2A ABC-type transpo 100.0 3.7E-46 8E-51 394.8 23.2 220 500-732 7-234 (263)
15 COG1116 TauB ABC-type nitrate/ 100.0 4.4E-46 9.6E-51 398.6 23.7 204 501-719 3-207 (248)
16 COG3842 PotA ABC-type spermidi 100.0 2.3E-46 4.9E-51 422.5 22.4 218 501-731 5-224 (352)
17 COG1131 CcmA ABC-type multidru 100.0 1.1E-45 2.4E-50 412.5 27.5 224 501-737 4-230 (293)
18 COG1136 SalX ABC-type antimicr 100.0 1.1E-45 2.3E-50 394.6 25.3 207 502-720 2-219 (226)
19 COG1120 FepC ABC-type cobalami 100.0 4.4E-46 9.4E-51 404.6 22.5 220 501-731 2-226 (258)
20 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.6E-45 3.4E-50 398.6 25.2 220 500-732 3-226 (254)
21 COG3638 ABC-type phosphate/pho 100.0 1.6E-45 3.6E-50 389.0 20.7 225 500-734 2-238 (258)
22 COG1118 CysA ABC-type sulfate/ 100.0 3.1E-45 6.8E-50 398.3 20.1 220 501-732 2-226 (345)
23 COG2884 FtsE Predicted ATPase 100.0 1.7E-44 3.7E-49 370.0 19.5 211 502-725 2-218 (223)
24 COG4555 NatA ABC-type Na+ tran 100.0 1E-44 2.2E-49 374.2 17.8 221 502-735 2-224 (245)
25 PRK13537 nodulation ABC transp 100.0 2.4E-43 5.2E-48 396.1 28.7 219 501-733 7-227 (306)
26 COG1117 PstB ABC-type phosphat 100.0 2.6E-44 5.7E-49 374.3 18.9 221 500-731 6-235 (253)
27 TIGR02314 ABC_MetN D-methionin 100.0 2.8E-43 6.1E-48 400.7 28.9 218 502-731 2-228 (343)
28 PRK11650 ugpC glycerol-3-phosp 100.0 3.1E-43 6.7E-48 402.6 29.0 219 501-732 3-223 (356)
29 TIGR03265 PhnT2 putative 2-ami 100.0 3.6E-43 7.9E-48 401.6 29.3 218 501-732 4-223 (353)
30 cd03261 ABC_Org_Solvent_Resist 100.0 4.2E-43 9E-48 378.5 27.6 217 502-731 1-224 (235)
31 PRK11432 fbpC ferric transport 100.0 4.7E-43 1E-47 400.3 29.6 218 501-732 6-225 (351)
32 TIGR03258 PhnT 2-aminoethylpho 100.0 7.7E-43 1.7E-47 399.9 29.2 218 501-732 5-227 (362)
33 COG1122 CbiO ABC-type cobalt t 100.0 3.1E-43 6.8E-48 380.5 24.1 220 501-733 3-228 (235)
34 PRK10851 sulfate/thiosulfate t 100.0 1.5E-42 3.2E-47 396.6 29.2 221 501-732 2-225 (353)
35 PRK13536 nodulation factor exp 100.0 2.3E-42 5E-47 393.2 29.6 221 500-734 40-262 (340)
36 TIGR00960 3a0501s02 Type II (G 100.0 1.5E-42 3.1E-47 369.5 26.0 207 502-719 2-214 (216)
37 PRK09452 potA putrescine/sperm 100.0 2.6E-42 5.6E-47 397.1 29.6 218 501-732 14-233 (375)
38 cd03265 ABC_DrrA DrrA is the A 100.0 3.4E-42 7.3E-47 367.9 26.8 216 502-731 1-219 (220)
39 COG1124 DppF ABC-type dipeptid 100.0 1.1E-42 2.3E-47 370.0 22.5 219 501-733 3-231 (252)
40 cd03259 ABC_Carb_Solutes_like 100.0 3E-42 6.6E-47 366.3 26.0 211 502-726 1-213 (213)
41 cd03219 ABC_Mj1267_LivG_branch 100.0 4.3E-42 9.3E-47 370.3 27.1 219 502-731 1-230 (236)
42 TIGR01288 nodI ATP-binding ABC 100.0 5E-42 1.1E-46 384.7 28.7 219 501-733 4-224 (303)
43 cd03296 ABC_CysA_sulfate_impor 100.0 6.3E-42 1.4E-46 370.5 28.4 220 501-731 2-224 (239)
44 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.1E-42 1.1E-46 366.6 27.2 214 502-728 1-218 (220)
45 PRK11000 maltose/maltodextrin 100.0 5.9E-42 1.3E-46 394.0 29.4 218 501-732 3-222 (369)
46 PRK11607 potG putrescine trans 100.0 7E-42 1.5E-46 393.9 29.4 218 501-732 19-238 (377)
47 PRK11153 metN DL-methionine tr 100.0 6.9E-42 1.5E-46 389.9 29.1 219 502-732 2-229 (343)
48 cd03218 ABC_YhbG The ABC trans 100.0 7.9E-42 1.7E-46 367.3 27.2 216 502-731 1-220 (232)
49 cd03256 ABC_PhnC_transporter A 100.0 6.4E-42 1.4E-46 369.7 25.7 221 502-732 1-233 (241)
50 PRK13643 cbiO cobalt transport 100.0 1.2E-41 2.5E-46 379.2 28.5 230 502-744 2-247 (288)
51 cd03263 ABC_subfamily_A The AB 100.0 9.1E-42 2E-46 364.0 26.0 217 502-731 1-219 (220)
52 TIGR03522 GldA_ABC_ATP gliding 100.0 1.5E-41 3.3E-46 380.6 28.6 218 501-733 2-221 (301)
53 cd03258 ABC_MetN_methionine_tr 100.0 1.1E-41 2.4E-46 366.7 26.4 218 502-731 2-228 (233)
54 cd03260 ABC_PstB_phosphate_tra 100.0 7.3E-42 1.6E-46 366.7 24.7 218 502-730 1-226 (227)
55 PRK13637 cbiO cobalt transport 100.0 2.5E-41 5.3E-46 376.5 29.8 220 501-732 2-233 (287)
56 cd03269 ABC_putative_ATPase Th 100.0 1.2E-41 2.6E-46 360.9 25.8 210 502-726 1-210 (210)
57 cd03301 ABC_MalK_N The N-termi 100.0 1.5E-41 3.4E-46 360.5 26.6 211 502-726 1-213 (213)
58 COG3840 ThiQ ABC-type thiamine 100.0 2.7E-42 5.8E-47 351.3 19.7 215 502-732 2-218 (231)
59 cd03266 ABC_NatA_sodium_export 100.0 1.4E-41 3E-46 362.1 25.9 213 502-726 2-218 (218)
60 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.2E-41 2.5E-46 362.7 25.1 206 502-719 1-216 (218)
61 cd03224 ABC_TM1139_LivF_branch 100.0 1.6E-41 3.4E-46 362.4 25.9 215 502-732 1-220 (222)
62 PRK13634 cbiO cobalt transport 100.0 3.1E-41 6.8E-46 376.1 29.2 219 501-732 2-234 (290)
63 PRK09493 glnQ glutamine ABC tr 100.0 2.8E-41 6E-46 365.4 28.0 218 502-732 2-224 (240)
64 TIGR01188 drrA daunorubicin re 100.0 1.4E-41 3E-46 380.9 26.2 209 514-734 4-214 (302)
65 PRK09536 btuD corrinoid ABC tr 100.0 1.9E-41 4.1E-46 392.6 27.9 220 501-731 3-226 (402)
66 PRK11264 putative amino-acid A 100.0 3.2E-41 6.9E-46 366.8 27.8 218 501-731 3-231 (250)
67 PRK13651 cobalt transporter AT 100.0 3.8E-41 8.2E-46 378.2 29.1 219 501-732 2-253 (305)
68 KOG0058 Peptide exporter, ABC 100.0 3.9E-42 8.5E-47 407.5 22.2 263 453-732 424-690 (716)
69 TIGR02315 ABC_phnC phosphonate 100.0 1.4E-41 3.1E-46 367.8 24.3 220 502-731 2-233 (243)
70 cd03268 ABC_BcrA_bacitracin_re 100.0 2E-41 4.3E-46 358.8 24.8 207 502-726 1-208 (208)
71 PRK11629 lolD lipoprotein tran 100.0 5E-41 1.1E-45 362.2 28.2 215 501-728 5-229 (233)
72 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.6E-41 7.8E-46 365.2 27.1 217 502-731 1-223 (242)
73 PRK11831 putative ABC transpor 100.0 5.3E-41 1.2E-45 370.1 28.8 219 501-732 7-232 (269)
74 TIGR02673 FtsE cell division A 100.0 3.3E-41 7.2E-46 358.3 25.7 206 502-719 2-213 (214)
75 PRK13647 cbiO cobalt transport 100.0 6.8E-41 1.5E-45 370.5 29.2 218 501-731 4-225 (274)
76 PRK13650 cbiO cobalt transport 100.0 5E-41 1.1E-45 372.5 28.1 219 501-732 4-228 (279)
77 cd03292 ABC_FtsE_transporter F 100.0 3.6E-41 7.8E-46 357.7 25.5 206 502-719 1-212 (214)
78 PRK13631 cbiO cobalt transport 100.0 9.3E-41 2E-45 377.3 29.6 230 501-743 21-278 (320)
79 TIGR01186 proV glycine betaine 100.0 4E-41 8.7E-46 385.4 26.8 207 514-732 4-218 (363)
80 cd03234 ABCG_White The White s 100.0 6.2E-41 1.3E-45 359.9 26.6 219 502-726 4-226 (226)
81 PRK13646 cbiO cobalt transport 100.0 6.5E-41 1.4E-45 372.8 27.7 219 501-732 2-234 (286)
82 PRK11124 artP arginine transpo 100.0 7.8E-41 1.7E-45 362.4 27.5 217 501-731 2-228 (242)
83 PRK10895 lipopolysaccharide AB 100.0 6.1E-41 1.3E-45 363.0 26.6 219 501-732 3-225 (241)
84 PRK13641 cbiO cobalt transport 100.0 7.9E-41 1.7E-45 372.3 28.1 219 501-732 2-233 (287)
85 COG2274 SunT ABC-type bacterio 100.0 1.4E-41 3.1E-46 415.0 24.0 225 500-734 470-697 (709)
86 PRK15079 oligopeptide ABC tran 100.0 9E-41 1.9E-45 379.0 28.8 222 501-732 8-250 (331)
87 cd03226 ABC_cobalt_CbiO_domain 100.0 2.8E-41 6.1E-46 357.1 22.9 202 504-722 2-204 (205)
88 TIGR00972 3a0107s01c2 phosphat 100.0 1.2E-40 2.6E-45 362.2 28.1 217 502-731 2-230 (247)
89 PRK10619 histidine/lysine/argi 100.0 1.3E-40 2.9E-45 364.1 28.6 218 501-731 5-239 (257)
90 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.6E-40 3.6E-45 358.8 28.6 216 502-732 2-220 (236)
91 PRK11248 tauB taurine transpor 100.0 1.3E-40 2.7E-45 364.8 28.1 212 502-728 2-215 (255)
92 cd03225 ABC_cobalt_CbiO_domain 100.0 5E-41 1.1E-45 356.1 23.9 205 504-719 2-210 (211)
93 cd03262 ABC_HisP_GlnQ_permease 100.0 7.2E-41 1.6E-45 355.1 24.8 206 502-719 1-211 (213)
94 TIGR02211 LolD_lipo_ex lipopro 100.0 9.9E-41 2.1E-45 356.3 25.9 208 502-722 2-219 (221)
95 TIGR01978 sufC FeS assembly AT 100.0 1.5E-40 3.2E-45 359.5 27.4 223 502-732 1-233 (243)
96 PRK13635 cbiO cobalt transport 100.0 1.7E-40 3.7E-45 368.3 28.5 219 501-732 5-228 (279)
97 PRK14247 phosphate ABC transpo 100.0 1.9E-40 4.1E-45 361.1 28.2 221 501-732 3-233 (250)
98 PRK13649 cbiO cobalt transport 100.0 2.3E-40 5E-45 366.7 29.4 218 501-731 2-232 (280)
99 COG1137 YhbG ABC-type (unclass 100.0 3.9E-42 8.6E-47 354.7 13.9 221 500-732 3-227 (243)
100 PRK11614 livF leucine/isoleuci 100.0 1.4E-40 3.1E-45 359.3 26.8 216 501-732 5-225 (237)
101 cd03264 ABC_drug_resistance_li 100.0 9.4E-41 2E-45 354.3 24.7 209 502-726 1-211 (211)
102 TIGR01257 rim_protein retinal- 100.0 1.2E-38 2.6E-43 418.2 49.9 223 500-735 927-1151(2272)
103 cd03257 ABC_NikE_OppD_transpor 100.0 1.4E-40 3.1E-45 356.0 26.2 215 502-726 2-228 (228)
104 PRK11300 livG leucine/isoleuci 100.0 2.2E-40 4.8E-45 361.2 27.9 220 501-731 5-241 (255)
105 COG4988 CydD ABC-type transpor 100.0 4E-41 8.7E-46 392.8 23.4 260 450-732 274-542 (559)
106 PRK13636 cbiO cobalt transport 100.0 2.9E-40 6.3E-45 367.1 29.1 219 501-732 5-230 (283)
107 cd03235 ABC_Metallic_Cations A 100.0 5E-41 1.1E-45 356.9 22.0 209 504-726 2-213 (213)
108 TIGR03005 ectoine_ehuA ectoine 100.0 2.3E-40 4.9E-45 361.1 27.5 217 502-731 1-234 (252)
109 PRK14267 phosphate ABC transpo 100.0 3.1E-40 6.8E-45 359.9 28.3 221 501-732 4-236 (253)
110 PRK14268 phosphate ABC transpo 100.0 3.2E-40 6.9E-45 361.6 28.3 217 501-731 12-240 (258)
111 PRK14273 phosphate ABC transpo 100.0 3E-40 6.5E-45 360.5 28.0 219 501-732 7-237 (254)
112 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.4E-40 3E-45 367.0 25.3 216 503-732 26-249 (269)
113 PRK13632 cbiO cobalt transport 100.0 2.3E-40 5.1E-45 365.4 27.2 220 500-732 6-230 (271)
114 PRK13638 cbiO cobalt transport 100.0 3.1E-40 6.7E-45 364.3 28.0 217 502-732 2-224 (271)
115 COG0411 LivG ABC-type branched 100.0 3.6E-41 7.7E-46 358.6 19.7 221 501-732 4-238 (250)
116 PRK11022 dppD dipeptide transp 100.0 4E-40 8.8E-45 373.0 29.5 223 501-732 3-242 (326)
117 TIGR03411 urea_trans_UrtD urea 100.0 3.5E-40 7.6E-45 357.0 27.7 218 502-731 3-229 (242)
118 PRK10908 cell division protein 100.0 2.7E-40 6E-45 353.7 26.5 208 502-722 2-215 (222)
119 PRK11231 fecE iron-dicitrate t 100.0 2.4E-40 5.2E-45 361.7 26.6 220 501-731 2-225 (255)
120 PRK14241 phosphate transporter 100.0 4.6E-40 9.9E-45 360.1 28.5 221 501-732 4-241 (258)
121 PRK13644 cbiO cobalt transport 100.0 2.7E-40 5.8E-45 365.7 26.9 217 502-732 2-223 (274)
122 PRK13548 hmuV hemin importer A 100.0 3.3E-40 7.2E-45 361.7 27.3 217 502-732 3-229 (258)
123 PRK11308 dppF dipeptide transp 100.0 4.1E-40 8.8E-45 373.1 28.8 221 501-732 5-243 (327)
124 COG4175 ProV ABC-type proline/ 100.0 6.3E-41 1.4E-45 364.9 21.2 221 500-732 3-253 (386)
125 COG0410 LivF ABC-type branched 100.0 1.3E-40 2.8E-45 352.0 22.7 217 501-732 3-225 (237)
126 TIGR02769 nickel_nikE nickel i 100.0 4.7E-40 1E-44 361.7 28.0 220 502-732 3-239 (265)
127 PRK10070 glycine betaine trans 100.0 4.4E-40 9.6E-45 380.9 28.7 204 517-732 42-253 (400)
128 PRK13639 cbiO cobalt transport 100.0 8E-40 1.7E-44 362.0 29.2 218 502-732 2-225 (275)
129 PRK13652 cbiO cobalt transport 100.0 6.1E-40 1.3E-44 363.3 28.3 219 501-732 3-226 (277)
130 PRK13640 cbiO cobalt transport 100.0 6.8E-40 1.5E-44 364.0 28.6 219 501-732 5-231 (282)
131 PRK09984 phosphonate/organopho 100.0 4.2E-40 9.1E-45 361.1 26.6 222 501-731 4-240 (262)
132 PRK11247 ssuB aliphatic sulfon 100.0 4.1E-40 9E-45 361.4 26.1 207 501-729 12-219 (257)
133 PRK14245 phosphate ABC transpo 100.0 9.2E-40 2E-44 355.9 28.5 219 501-732 3-233 (250)
134 TIGR03410 urea_trans_UrtE urea 100.0 4.4E-40 9.4E-45 353.7 25.6 213 502-731 1-219 (230)
135 COG4152 ABC-type uncharacteriz 100.0 7.9E-41 1.7E-45 353.7 19.2 222 501-737 2-223 (300)
136 PRK10575 iron-hydroxamate tran 100.0 4.7E-40 1E-44 361.7 26.3 220 501-731 11-235 (265)
137 PRK13648 cbiO cobalt transport 100.0 9.7E-40 2.1E-44 360.0 28.7 219 501-732 7-230 (269)
138 TIGR03873 F420-0_ABC_ATP propo 100.0 5.7E-40 1.2E-44 358.9 26.4 219 502-731 2-224 (256)
139 PRK15093 antimicrobial peptide 100.0 1E-39 2.2E-44 370.4 29.2 225 501-732 3-247 (330)
140 PRK10584 putative ABC transpor 100.0 9.3E-40 2E-44 350.7 27.3 211 501-724 6-226 (228)
141 PRK14242 phosphate transporter 100.0 1.2E-39 2.5E-44 355.4 28.4 218 501-731 6-235 (253)
142 PRK10253 iron-enterobactin tra 100.0 6.1E-40 1.3E-44 360.8 26.3 222 500-732 6-232 (265)
143 PRK13633 cobalt transporter AT 100.0 8.8E-40 1.9E-44 362.6 27.7 219 501-732 4-232 (280)
144 PRK14269 phosphate ABC transpo 100.0 9.3E-40 2E-44 355.3 27.3 220 501-732 2-229 (246)
145 PRK10744 pstB phosphate transp 100.0 1.1E-39 2.5E-44 357.6 28.1 220 500-732 12-243 (260)
146 PRK14235 phosphate transporter 100.0 1.4E-39 3E-44 358.6 28.8 219 501-731 19-249 (267)
147 PRK14250 phosphate ABC transpo 100.0 7.3E-40 1.6E-44 355.3 26.2 213 500-731 2-219 (241)
148 PRK13645 cbiO cobalt transport 100.0 1E-39 2.2E-44 363.5 27.6 219 501-732 6-239 (289)
149 TIGR03740 galliderm_ABC gallid 100.0 8.6E-40 1.9E-44 350.1 26.0 210 502-730 1-210 (223)
150 cd03298 ABC_ThiQ_thiamine_tran 100.0 6.9E-40 1.5E-44 347.8 24.8 209 502-726 1-211 (211)
151 PRK14256 phosphate ABC transpo 100.0 2.1E-39 4.5E-44 353.5 28.6 219 501-731 4-234 (252)
152 PRK09473 oppD oligopeptide tra 100.0 1.7E-39 3.7E-44 368.5 28.9 226 501-732 12-250 (330)
153 TIGR02142 modC_ABC molybdenum 100.0 1.2E-39 2.5E-44 373.1 27.8 209 506-732 4-220 (354)
154 PRK13549 xylose transporter AT 100.0 6.3E-40 1.4E-44 391.4 26.6 222 501-731 5-230 (506)
155 TIGR03415 ABC_choXWV_ATP choli 100.0 1.4E-39 3E-44 374.6 28.5 207 514-732 35-253 (382)
156 COG4598 HisP ABC-type histidin 100.0 4.1E-41 8.9E-46 341.4 13.9 219 501-732 6-240 (256)
157 PRK14259 phosphate ABC transpo 100.0 1.5E-39 3.2E-44 358.9 27.4 219 500-732 12-252 (269)
158 PRK14239 phosphate transporter 100.0 2.1E-39 4.5E-44 353.0 28.1 218 501-731 5-234 (252)
159 cd03252 ABCC_Hemolysin The ABC 100.0 4.5E-40 9.8E-45 355.1 22.6 219 502-732 1-224 (237)
160 PRK11144 modC molybdate transp 100.0 1.2E-39 2.7E-44 372.7 27.5 208 502-732 2-217 (352)
161 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 9.5E-40 2.1E-44 402.9 27.7 212 501-732 451-672 (686)
162 PRK13642 cbiO cobalt transport 100.0 2.9E-39 6.2E-44 358.0 28.6 219 501-732 4-228 (277)
163 cd03300 ABC_PotA_N PotA is an 100.0 2.8E-39 6E-44 348.7 27.6 217 502-732 1-219 (232)
164 COG1132 MdlB ABC-type multidru 100.0 7.9E-40 1.7E-44 395.4 26.0 223 500-733 327-552 (567)
165 PRK11174 cysteine/glutathione 100.0 1.4E-39 3E-44 394.7 28.1 221 500-732 348-571 (588)
166 TIGR00968 3a0106s01 sulfate AB 100.0 2.8E-39 6E-44 349.9 27.5 217 502-732 1-219 (237)
167 PRK10771 thiQ thiamine transpo 100.0 2.1E-39 4.5E-44 349.4 26.3 215 502-732 2-218 (232)
168 PRK14274 phosphate ABC transpo 100.0 3.4E-39 7.3E-44 353.5 28.2 219 501-732 12-242 (259)
169 PRK15112 antimicrobial peptide 100.0 2.1E-39 4.6E-44 357.0 26.8 221 501-732 4-238 (267)
170 PRK14240 phosphate transporter 100.0 4E-39 8.6E-44 350.7 28.5 218 501-731 3-232 (250)
171 TIGR03608 L_ocin_972_ABC putat 100.0 1.1E-39 2.4E-44 344.4 23.3 199 504-716 1-206 (206)
172 TIGR01277 thiQ thiamine ABC tr 100.0 2.8E-39 6.2E-44 344.0 26.0 210 502-727 1-212 (213)
173 PRK14270 phosphate ABC transpo 100.0 4.6E-39 1E-43 350.6 28.2 218 501-731 4-233 (251)
174 cd03299 ABC_ModC_like Archeal 100.0 4.7E-39 1E-43 347.7 27.8 216 502-732 1-218 (235)
175 PRK14237 phosphate transporter 100.0 5.6E-39 1.2E-43 353.7 28.9 220 500-732 19-250 (267)
176 PRK14272 phosphate ABC transpo 100.0 5.6E-39 1.2E-43 349.6 28.4 220 501-732 4-235 (252)
177 PRK14260 phosphate ABC transpo 100.0 4.6E-39 9.9E-44 352.6 27.9 220 501-732 7-242 (259)
178 PRK14253 phosphate ABC transpo 100.0 4.8E-39 1E-43 349.8 27.5 218 501-731 3-231 (249)
179 PRK14262 phosphate ABC transpo 100.0 6.9E-39 1.5E-43 348.8 28.6 219 501-732 3-233 (250)
180 PRK10762 D-ribose transporter 100.0 2.1E-39 4.6E-44 386.4 26.4 220 501-731 4-228 (501)
181 PRK13547 hmuV hemin importer A 100.0 3.1E-39 6.6E-44 357.3 25.7 219 502-731 2-242 (272)
182 PRK14244 phosphate ABC transpo 100.0 5.9E-39 1.3E-43 349.7 27.4 219 501-731 5-235 (251)
183 cd03297 ABC_ModC_molybdenum_tr 100.0 3.8E-39 8.2E-44 343.1 25.2 202 506-726 5-214 (214)
184 COG4525 TauB ABC-type taurine 100.0 1.3E-39 2.8E-44 334.5 20.5 215 502-729 4-220 (259)
185 cd03232 ABC_PDR_domain2 The pl 100.0 4.5E-39 9.8E-44 337.9 25.2 188 501-726 3-192 (192)
186 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.2E-39 4.8E-44 401.0 26.8 215 500-733 476-700 (710)
187 cd03251 ABCC_MsbA MsbA is an e 100.0 1.9E-39 4.2E-44 349.2 22.7 220 502-733 1-225 (234)
188 PRK09700 D-allose transporter 100.0 3.2E-39 6.9E-44 385.6 26.3 220 501-731 5-232 (510)
189 PRK11176 lipid transporter ATP 100.0 3E-39 6.6E-44 391.0 26.5 216 501-732 341-566 (582)
190 PRK14251 phosphate ABC transpo 100.0 9.8E-39 2.1E-43 347.8 27.7 218 501-731 4-233 (251)
191 KOG0057 Mitochondrial Fe/S clu 100.0 2.1E-39 4.5E-44 373.4 23.4 222 500-733 350-574 (591)
192 PRK11701 phnK phosphonate C-P 100.0 1E-38 2.2E-43 349.5 27.8 218 501-731 6-239 (258)
193 PRK14258 phosphate ABC transpo 100.0 1.2E-38 2.6E-43 349.9 28.4 221 501-732 7-244 (261)
194 PRK14248 phosphate ABC transpo 100.0 1.3E-38 2.8E-43 350.7 28.7 218 501-731 21-250 (268)
195 TIGR02982 heterocyst_DevA ABC 100.0 6E-39 1.3E-43 343.1 25.2 207 502-719 2-217 (220)
196 PRK14261 phosphate ABC transpo 100.0 1.3E-38 2.8E-43 347.4 28.2 219 501-732 6-236 (253)
197 PRK14249 phosphate ABC transpo 100.0 1.4E-38 3E-43 346.9 28.1 218 501-731 4-233 (251)
198 cd03267 ABC_NatA_like Similar 100.0 6.3E-39 1.4E-43 347.1 25.1 201 514-726 32-236 (236)
199 PRK14254 phosphate ABC transpo 100.0 1.8E-38 3.9E-43 353.3 29.3 217 501-731 39-267 (285)
200 PRK14271 phosphate ABC transpo 100.0 1.7E-38 3.7E-43 351.9 28.5 219 501-732 21-250 (276)
201 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.9E-39 6.3E-44 349.0 21.9 221 502-734 1-227 (238)
202 PRK15439 autoinducer 2 ABC tra 100.0 7.4E-39 1.6E-43 382.6 27.6 213 501-731 11-227 (510)
203 PRK14255 phosphate ABC transpo 100.0 2E-38 4.2E-43 345.6 28.4 218 501-731 5-234 (252)
204 PRK14275 phosphate ABC transpo 100.0 2.2E-38 4.8E-43 352.6 29.3 219 501-732 39-269 (286)
205 cd03233 ABC_PDR_domain1 The pl 100.0 1.1E-38 2.5E-43 337.6 25.6 194 501-726 3-202 (202)
206 PRK10418 nikD nickel transport 100.0 1.5E-38 3.3E-43 347.5 27.1 217 501-732 4-229 (254)
207 COG0444 DppD ABC-type dipeptid 100.0 8.2E-39 1.8E-43 353.1 25.1 222 502-732 2-242 (316)
208 TIGR03375 type_I_sec_LssB type 100.0 7.8E-39 1.7E-43 395.2 27.8 217 501-734 463-689 (694)
209 KOG0055 Multidrug/pheromone ex 100.0 1.7E-39 3.7E-44 403.0 21.8 264 455-733 309-576 (1228)
210 PRK14257 phosphate ABC transpo 100.0 2.2E-38 4.8E-43 359.2 29.1 224 501-732 80-312 (329)
211 PRK14236 phosphate transporter 100.0 2.4E-38 5.2E-43 349.6 28.5 218 501-731 25-254 (272)
212 TIGR02633 xylG D-xylose ABC tr 100.0 9.8E-39 2.1E-43 380.4 27.2 220 502-730 2-227 (500)
213 PRK11160 cysteine/glutathione 100.0 8.2E-39 1.8E-43 387.3 26.2 216 500-732 337-561 (574)
214 cd03254 ABCC_Glucan_exporter_l 100.0 7.4E-39 1.6E-43 343.7 22.7 219 501-732 2-225 (229)
215 PRK10419 nikE nickel transport 100.0 2E-38 4.3E-43 349.7 26.6 221 501-732 3-240 (268)
216 TIGR02323 CP_lyasePhnK phospho 100.0 2.6E-38 5.6E-43 344.8 27.2 219 501-732 3-237 (253)
217 PRK13538 cytochrome c biogenes 100.0 1.3E-38 2.9E-43 337.0 24.2 199 502-716 2-202 (204)
218 cd03213 ABCG_EPDR ABCG transpo 100.0 2E-38 4.3E-43 333.7 25.3 188 501-726 3-194 (194)
219 PRK10247 putative ABC transpor 100.0 7.7E-39 1.7E-43 343.9 22.6 210 501-727 7-221 (225)
220 PRK14263 phosphate ABC transpo 100.0 4.1E-38 8.8E-43 346.1 28.7 223 500-732 7-244 (261)
221 PRK14265 phosphate ABC transpo 100.0 3.6E-38 7.7E-43 348.9 28.4 219 500-732 19-257 (274)
222 PRK13543 cytochrome c biogenes 100.0 1.8E-38 3.9E-43 338.6 25.0 201 501-717 11-211 (214)
223 PRK14238 phosphate transporter 100.0 3E-38 6.5E-43 348.8 27.5 218 501-731 24-253 (271)
224 PRK14243 phosphate transporter 100.0 2.8E-38 6E-43 347.7 27.1 218 501-732 10-247 (264)
225 CHL00131 ycf16 sulfate ABC tra 100.0 5.7E-38 1.2E-42 341.7 29.2 223 501-731 7-239 (252)
226 TIGR01842 type_I_sec_PrtD type 100.0 1.8E-38 3.9E-43 381.9 27.8 223 501-732 316-541 (544)
227 PRK15056 manganese/iron transp 100.0 2E-38 4.4E-43 350.2 26.0 220 501-731 6-228 (272)
228 PRK14266 phosphate ABC transpo 100.0 3.8E-38 8.2E-43 343.0 27.4 220 500-732 2-233 (250)
229 TIGR01193 bacteriocin_ABC ABC- 100.0 1.2E-38 2.6E-43 394.4 26.6 215 501-733 473-697 (708)
230 KOG0055 Multidrug/pheromone ex 100.0 3.4E-38 7.4E-43 391.5 30.4 224 500-733 986-1213(1228)
231 cd03231 ABC_CcmA_heme_exporter 100.0 1.6E-38 3.5E-43 335.8 23.1 196 502-716 1-198 (201)
232 PRK10790 putative multidrug tr 100.0 2.8E-38 6.1E-43 383.6 28.0 213 501-732 340-562 (592)
233 TIGR03269 met_CoM_red_A2 methy 100.0 2.9E-38 6.4E-43 378.1 27.8 222 502-735 1-260 (520)
234 PRK09580 sufC cysteine desulfu 100.0 5.8E-38 1.3E-42 340.6 27.3 223 502-732 2-234 (248)
235 PRK11288 araG L-arabinose tran 100.0 3.3E-38 7.1E-43 376.2 27.7 216 501-727 4-223 (501)
236 PRK10261 glutathione transport 100.0 3.9E-38 8.5E-43 384.5 29.0 221 501-732 313-552 (623)
237 TIGR01184 ntrCD nitrate transp 100.0 1.9E-38 4.2E-43 342.1 23.1 199 519-729 1-200 (230)
238 PRK10982 galactose/methyl gala 100.0 2.1E-38 4.5E-43 376.9 25.6 216 505-731 2-221 (491)
239 cd03253 ABCC_ATM1_transporter 100.0 1.9E-38 4E-43 342.0 22.8 218 502-732 1-223 (236)
240 COG4181 Predicted ABC-type tra 100.0 5.6E-39 1.2E-43 324.1 17.4 210 501-723 6-225 (228)
241 TIGR00958 3a01208 Conjugate Tr 100.0 2E-38 4.2E-43 392.6 26.1 214 501-733 478-702 (711)
242 cd03245 ABCC_bacteriocin_expor 100.0 2E-38 4.4E-43 338.3 21.9 210 501-726 2-220 (220)
243 TIGR02770 nickel_nikD nickel i 100.0 4.1E-38 9E-43 339.1 24.4 205 518-732 1-214 (230)
244 TIGR01257 rim_protein retinal- 100.0 3.6E-38 7.9E-43 413.7 28.9 224 501-736 1937-2162(2272)
245 PRK13539 cytochrome c biogenes 100.0 4.4E-38 9.5E-43 334.0 23.7 198 501-717 2-199 (207)
246 TIGR03269 met_CoM_red_A2 methy 100.0 5.4E-38 1.2E-42 375.8 27.3 220 501-733 279-517 (520)
247 COG1123 ATPase components of v 100.0 3.4E-38 7.3E-43 369.6 24.9 221 501-732 280-518 (539)
248 PRK14246 phosphate ABC transpo 100.0 1E-37 2.2E-42 342.2 26.9 217 502-732 11-240 (257)
249 PRK03695 vitamin B12-transport 100.0 3.4E-38 7.4E-43 344.0 23.0 209 503-731 2-220 (248)
250 PRK15134 microcin C ABC transp 100.0 7.9E-38 1.7E-42 375.2 28.1 223 501-732 5-245 (529)
251 COG4987 CydC ABC-type transpor 100.0 1.1E-38 2.3E-43 367.4 19.6 216 501-733 336-561 (573)
252 COG1123 ATPase components of v 100.0 7.4E-38 1.6E-42 366.7 26.8 227 501-734 5-245 (539)
253 PTZ00265 multidrug resistance 100.0 3.2E-38 7E-43 413.0 26.4 226 501-732 1165-1451(1466)
254 TIGR02324 CP_lyasePhnL phospho 100.0 8.5E-38 1.8E-42 334.7 25.0 204 502-716 2-222 (224)
255 TIGR01189 ccmA heme ABC export 100.0 5.7E-38 1.2E-42 330.5 23.2 195 502-715 1-197 (198)
256 PRK14252 phosphate ABC transpo 100.0 1.7E-37 3.6E-42 341.4 27.8 217 501-731 16-247 (265)
257 PRK14264 phosphate ABC transpo 100.0 1.7E-37 3.6E-42 348.7 28.2 221 501-732 45-288 (305)
258 PRK10261 glutathione transport 100.0 8.3E-38 1.8E-42 381.7 27.8 220 501-731 12-256 (623)
259 PRK15134 microcin C ABC transp 100.0 6.3E-38 1.4E-42 376.1 26.1 221 501-732 275-514 (529)
260 TIGR02203 MsbA_lipidA lipid A 100.0 9.2E-38 2E-42 377.0 27.0 216 501-732 330-555 (571)
261 COG4161 ArtP ABC-type arginine 100.0 2.4E-38 5.2E-43 316.5 18.0 217 501-730 2-227 (242)
262 TIGR01846 type_I_sec_HlyB type 100.0 7.8E-38 1.7E-42 386.4 26.8 223 500-732 454-679 (694)
263 PRK13540 cytochrome c biogenes 100.0 6E-38 1.3E-42 331.0 22.0 194 502-714 2-197 (200)
264 PRK13657 cyclic beta-1,2-gluca 100.0 1.3E-37 2.7E-42 377.7 27.9 214 501-732 334-557 (588)
265 COG4618 ArpD ABC-type protease 100.0 2.9E-37 6.2E-42 352.7 28.8 231 497-736 330-563 (580)
266 PRK13549 xylose transporter AT 100.0 4.8E-38 1E-42 375.2 23.3 223 501-731 259-492 (506)
267 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.6E-38 1.4E-42 347.2 22.7 215 501-733 2-225 (275)
268 cd03230 ABC_DR_subfamily_A Thi 100.0 1.3E-37 2.7E-42 321.7 23.2 169 502-719 1-171 (173)
269 cd03248 ABCC_TAP TAP, the Tran 100.0 4E-38 8.6E-43 337.7 20.1 208 501-719 11-224 (226)
270 COG4559 ABC-type hemin transpo 100.0 5.1E-38 1.1E-42 326.8 19.8 219 502-732 2-229 (259)
271 PRK09544 znuC high-affinity zi 100.0 2.1E-37 4.5E-42 338.9 24.9 201 501-731 4-207 (251)
272 cd03244 ABCC_MRP_domain2 Domai 100.0 1E-37 2.3E-42 333.1 21.9 209 501-727 2-220 (221)
273 PRK10789 putative multidrug tr 100.0 1.4E-37 3.1E-42 376.0 25.9 215 501-732 313-537 (569)
274 TIGR01166 cbiO cobalt transpor 100.0 1.3E-37 2.8E-42 325.4 21.5 178 515-703 4-188 (190)
275 cd03229 ABC_Class3 This class 100.0 1.5E-37 3.3E-42 322.4 21.7 171 502-719 1-177 (178)
276 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.3E-37 4.9E-42 332.7 23.2 202 502-726 23-224 (224)
277 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.5E-37 7.6E-42 325.6 24.1 190 502-735 1-195 (200)
278 cd03288 ABCC_SUR2 The SUR doma 100.0 2.7E-37 5.8E-42 338.4 23.5 219 501-732 19-242 (257)
279 TIGR01192 chvA glucan exporter 100.0 4.7E-37 1E-41 372.7 27.7 221 501-732 334-557 (585)
280 COG4604 CeuD ABC-type enteroch 100.0 1.3E-38 2.8E-43 327.8 11.9 219 502-732 2-224 (252)
281 PRK10938 putative molybdenum t 100.0 1.7E-37 3.8E-42 368.9 23.3 209 501-731 3-222 (490)
282 TIGR02633 xylG D-xylose ABC tr 100.0 1.8E-37 4E-42 369.5 23.1 221 501-729 257-488 (500)
283 TIGR02204 MsbA_rel ABC transpo 100.0 4.2E-37 9.1E-42 371.8 26.3 215 501-732 337-562 (576)
284 cd03246 ABCC_Protease_Secretio 100.0 2.9E-37 6.4E-42 318.9 21.2 168 502-719 1-171 (173)
285 PRK09700 D-allose transporter 100.0 2.5E-37 5.5E-42 369.3 23.1 215 501-728 265-493 (510)
286 KOG0056 Heavy metal exporter H 100.0 6.7E-38 1.5E-42 353.2 16.8 264 453-733 495-761 (790)
287 COG1129 MglA ABC-type sugar tr 100.0 4E-37 8.8E-42 358.5 23.8 216 501-727 8-228 (500)
288 PRK13546 teichoic acids export 100.0 3.4E-36 7.3E-41 331.8 29.5 212 500-733 3-232 (264)
289 cd03215 ABC_Carb_Monos_II This 100.0 5.8E-37 1.3E-41 319.2 22.2 170 501-719 4-180 (182)
290 TIGR02868 CydC thiol reductant 100.0 3.2E-37 6.8E-42 369.6 22.9 188 500-702 333-529 (529)
291 cd03247 ABCC_cytochrome_bd The 100.0 5E-37 1.1E-41 318.4 21.2 176 502-726 1-178 (178)
292 TIGR02857 CydD thiol reductant 100.0 5.4E-37 1.2E-41 367.6 23.2 200 501-716 320-529 (529)
293 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.2E-36 2.6E-41 322.4 22.8 198 501-727 6-206 (207)
294 cd03250 ABCC_MRP_domain1 Domai 100.0 8.5E-37 1.8E-41 322.8 20.9 197 502-719 1-203 (204)
295 PRK10762 D-ribose transporter 100.0 1.3E-36 2.9E-41 362.4 23.3 215 501-731 257-482 (501)
296 COG4148 ModC ABC-type molybdat 100.0 3.5E-37 7.5E-42 331.0 16.2 195 520-732 15-217 (352)
297 cd03214 ABC_Iron-Siderophores_ 100.0 1.2E-36 2.7E-41 316.2 19.4 175 503-725 1-179 (180)
298 PRK13545 tagH teichoic acids e 100.0 1.1E-35 2.4E-40 349.7 29.1 213 501-735 21-234 (549)
299 PLN03232 ABC transporter C fam 100.0 2.8E-36 6E-41 397.4 26.6 214 501-732 1234-1457(1495)
300 PRK13541 cytochrome c biogenes 100.0 4.9E-36 1.1E-40 315.3 22.9 190 502-712 2-191 (195)
301 PRK11288 araG L-arabinose tran 100.0 2E-36 4.3E-41 361.0 22.2 216 501-731 257-483 (501)
302 TIGR03771 anch_rpt_ABC anchore 100.0 3.2E-36 7E-41 323.4 21.5 196 524-731 1-199 (223)
303 PLN03130 ABC transporter C fam 100.0 2.3E-36 4.9E-41 398.9 24.2 215 501-733 1237-1461(1622)
304 cd03290 ABCC_SUR1_N The SUR do 100.0 5.3E-36 1.1E-40 319.8 22.0 200 503-719 2-217 (218)
305 cd03228 ABCC_MRP_Like The MRP 100.0 4.2E-36 9.2E-41 309.7 20.1 167 502-719 1-170 (171)
306 COG3845 ABC-type uncharacteriz 100.0 3.8E-36 8.3E-41 344.3 21.4 216 501-727 4-223 (501)
307 cd03223 ABCD_peroxisomal_ALDP 100.0 7.8E-36 1.7E-40 306.9 21.4 165 502-721 1-165 (166)
308 PRK10522 multidrug transporter 100.0 1.4E-35 2.9E-40 357.3 26.8 205 501-725 322-530 (547)
309 PRK15064 ABC transporter ATP-b 100.0 1.4E-35 2.9E-40 356.0 26.1 209 502-732 2-241 (530)
310 PRK15439 autoinducer 2 ABC tra 100.0 6.1E-36 1.3E-40 357.6 23.0 215 501-731 268-490 (510)
311 COG0396 sufC Cysteine desulfur 100.0 2.5E-35 5.4E-40 310.9 23.8 234 500-742 2-242 (251)
312 TIGR01187 potA spermidine/putr 100.0 1.6E-35 3.4E-40 335.5 23.1 187 534-732 1-189 (325)
313 PRK11819 putative ABC transpor 100.0 2.6E-35 5.6E-40 355.6 25.9 210 501-731 6-248 (556)
314 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.9E-35 8.5E-40 320.2 24.5 199 518-740 9-218 (246)
315 TIGR00957 MRP_assoc_pro multi 100.0 2.4E-35 5.3E-40 389.0 26.9 216 500-733 1283-1508(1522)
316 cd03216 ABC_Carb_Monos_I This 100.0 4.1E-35 8.9E-40 300.7 22.5 158 502-724 1-162 (163)
317 PRK10535 macrolide transporter 100.0 7.8E-35 1.7E-39 357.0 28.5 219 501-732 4-231 (648)
318 PTZ00243 ABC transporter; Prov 100.0 1.6E-35 3.5E-40 390.3 23.9 215 500-732 1307-1532(1560)
319 PTZ00265 multidrug resistance 100.0 3.3E-35 7.2E-40 384.8 26.2 213 501-719 382-655 (1466)
320 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.7E-35 1.2E-39 352.3 25.8 212 501-733 4-248 (552)
321 PRK15064 ABC transporter ATP-b 100.0 5.3E-35 1.2E-39 350.9 24.4 203 501-732 319-524 (530)
322 PRK10938 putative molybdenum t 100.0 3.2E-35 6.9E-40 349.5 22.1 214 501-725 260-484 (490)
323 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.2E-34 2.6E-39 349.8 26.9 207 500-724 336-550 (555)
324 PRK10982 galactose/methyl gala 100.0 4.8E-35 1.1E-39 348.2 22.1 216 501-729 250-476 (491)
325 COG4172 ABC-type uncharacteriz 100.0 1.5E-34 3.2E-39 322.4 23.7 223 499-732 274-515 (534)
326 cd03291 ABCC_CFTR1 The CFTR su 100.0 5.1E-34 1.1E-38 317.3 27.3 201 500-732 38-246 (282)
327 PRK11819 putative ABC transpor 100.0 1.8E-34 3.8E-39 348.4 25.6 205 501-731 324-531 (556)
328 COG4619 ABC-type uncharacteriz 100.0 5.9E-36 1.3E-40 301.4 10.6 202 502-719 4-210 (223)
329 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.2E-34 4.8E-39 347.2 25.4 205 501-731 322-529 (552)
330 TIGR01271 CFTR_protein cystic 100.0 1.8E-34 3.8E-39 380.0 24.2 214 500-732 1216-1439(1490)
331 PRK15177 Vi polysaccharide exp 100.0 3.3E-34 7.1E-39 306.3 21.4 195 517-737 1-196 (213)
332 COG1119 ModF ABC-type molybden 100.0 1.1E-34 2.3E-39 309.2 17.2 217 500-727 30-256 (257)
333 PRK13409 putative ATPase RIL; 100.0 7E-34 1.5E-38 344.4 24.4 196 501-727 340-536 (590)
334 COG4172 ABC-type uncharacteriz 100.0 1.1E-33 2.3E-38 315.6 22.0 224 502-731 7-245 (534)
335 COG4674 Uncharacterized ABC-ty 100.0 3.8E-34 8.1E-39 294.6 16.4 221 500-732 4-234 (249)
336 COG4608 AppF ABC-type oligopep 100.0 1.1E-33 2.5E-38 306.7 20.8 186 501-732 4-198 (268)
337 PRK11147 ABC transporter ATPas 100.0 1.6E-33 3.5E-38 344.8 24.6 206 500-731 318-526 (635)
338 COG5265 ATM1 ABC-type transpor 100.0 5E-34 1.1E-38 320.3 17.3 223 500-733 261-486 (497)
339 PRK10636 putative ABC transpor 100.0 3.3E-33 7.2E-38 342.0 25.1 202 501-733 312-517 (638)
340 COG4586 ABC-type uncharacteriz 100.0 5.8E-34 1.3E-38 305.8 15.9 209 517-737 38-250 (325)
341 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.6E-33 3.4E-38 309.2 18.4 200 505-725 4-219 (255)
342 TIGR00954 3a01203 Peroxysomal 100.0 6.2E-33 1.4E-37 340.7 24.6 201 501-720 451-655 (659)
343 PRK10636 putative ABC transpor 100.0 1E-32 2.2E-37 337.8 25.4 208 502-731 2-234 (638)
344 COG1101 PhnK ABC-type uncharac 100.0 2.2E-33 4.8E-38 292.9 16.5 214 503-725 3-230 (263)
345 PLN03232 ABC transporter C fam 100.0 1.7E-32 3.6E-37 361.8 27.1 205 501-732 614-827 (1495)
346 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.7E-32 3.7E-37 276.2 20.5 143 502-719 1-143 (144)
347 PLN03130 ABC transporter C fam 100.0 2.3E-32 5.1E-37 361.1 27.4 204 501-732 614-827 (1622)
348 PLN03073 ABC transporter F fam 100.0 3.6E-32 7.9E-37 335.3 26.4 206 501-734 508-715 (718)
349 PRK11147 ABC transporter ATPas 100.0 4.8E-32 1E-36 331.9 26.0 208 501-731 3-241 (635)
350 cd03238 ABC_UvrA The excision 100.0 3.2E-32 6.9E-37 283.5 20.4 156 513-718 5-163 (176)
351 COG4136 ABC-type uncharacteriz 100.0 9.6E-33 2.1E-37 273.8 15.1 193 501-704 2-197 (213)
352 cd03222 ABC_RNaseL_inhibitor T 100.0 5.8E-32 1.2E-36 281.8 19.9 146 505-721 4-150 (177)
353 KOG0059 Lipid exporter ABCA1 a 100.0 2.6E-32 5.5E-37 344.2 19.9 224 500-736 563-790 (885)
354 COG1134 TagH ABC-type polysacc 100.0 3.8E-31 8.2E-36 282.4 24.6 203 515-738 39-241 (249)
355 TIGR00957 MRP_assoc_pro multi 100.0 2.3E-31 4.9E-36 351.5 27.9 209 501-732 636-849 (1522)
356 cd00267 ABC_ATPase ABC (ATP-bi 100.0 4.1E-31 9E-36 268.4 20.7 152 504-719 2-156 (157)
357 PRK13409 putative ATPase RIL; 100.0 1.1E-31 2.3E-36 325.5 19.2 191 505-718 77-286 (590)
358 COG4167 SapF ABC-type antimicr 100.0 2.2E-31 4.7E-36 271.3 17.2 220 502-732 5-238 (267)
359 COG0488 Uup ATPase components 100.0 7.2E-31 1.6E-35 312.4 23.3 210 500-731 2-238 (530)
360 TIGR01271 CFTR_protein cystic 100.0 9.3E-31 2E-35 344.9 26.3 196 516-732 439-635 (1490)
361 PTZ00243 ABC transporter; Prov 100.0 2.9E-30 6.3E-35 340.7 24.1 197 514-732 671-869 (1560)
362 PLN03073 ABC transporter F fam 100.0 1.1E-30 2.4E-35 322.2 18.2 221 499-731 175-429 (718)
363 COG4133 CcmA ABC-type transpor 100.0 1.1E-30 2.4E-35 268.5 14.5 188 502-704 3-192 (209)
364 KOG0054 Multidrug resistance-a 100.0 6.7E-30 1.5E-34 324.4 20.7 224 499-733 1136-1362(1381)
365 COG4107 PhnK ABC-type phosphon 100.0 1.3E-29 2.8E-34 256.7 14.1 214 501-732 6-240 (258)
366 cd03270 ABC_UvrA_I The excisio 100.0 1.1E-28 2.4E-33 266.2 21.7 193 514-726 6-226 (226)
367 PF00005 ABC_tran: ABC transpo 100.0 4.1E-29 8.9E-34 246.7 13.7 134 519-671 1-137 (137)
368 COG0488 Uup ATPase components 100.0 2.1E-27 4.5E-32 282.9 29.7 205 500-734 320-526 (530)
369 KOG0054 Multidrug resistance-a 100.0 5.3E-28 1.2E-32 307.2 25.3 206 500-732 517-730 (1381)
370 cd03271 ABC_UvrA_II The excisi 100.0 6.6E-28 1.4E-32 265.3 19.7 197 516-728 8-261 (261)
371 COG4778 PhnL ABC-type phosphon 100.0 2.3E-28 4.9E-33 247.1 13.0 208 501-718 4-227 (235)
372 cd03278 ABC_SMC_barmotin Barmo 99.9 7.5E-28 1.6E-32 254.8 13.2 168 520-720 14-192 (197)
373 COG1129 MglA ABC-type sugar tr 99.9 1.1E-25 2.4E-30 263.1 20.6 211 500-725 262-482 (500)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.9 4.4E-26 9.6E-31 247.0 16.0 198 502-717 4-234 (243)
375 cd03279 ABC_sbcCD SbcCD and ot 99.9 6.9E-26 1.5E-30 242.0 13.1 194 500-720 4-210 (213)
376 COG4138 BtuD ABC-type cobalami 99.9 1.4E-26 3E-31 235.0 6.5 208 501-732 3-220 (248)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.9 4.6E-27 9.9E-32 251.6 2.0 190 501-719 5-205 (212)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 9.7E-26 2.1E-30 246.5 12.4 179 529-717 25-242 (251)
379 PRK00635 excinuclease ABC subu 99.9 2.2E-24 4.8E-29 280.7 23.0 217 501-732 600-905 (1809)
380 cd03240 ABC_Rad50 The catalyti 99.9 4.2E-25 9E-30 235.0 12.7 168 522-721 16-200 (204)
381 PRK00349 uvrA excinuclease ABC 99.9 8.1E-24 1.8E-28 265.8 21.9 126 591-732 792-926 (943)
382 COG4178 ABC-type uncharacteriz 99.9 2.7E-23 5.9E-28 247.2 21.3 198 500-719 391-589 (604)
383 COG4615 PvdE ABC-type sideroph 99.9 1.5E-23 3.3E-28 234.0 13.6 205 500-725 321-529 (546)
384 KOG0927 Predicted transporter 99.9 1E-23 2.2E-28 243.4 11.5 208 500-735 388-598 (614)
385 COG3845 ABC-type uncharacteriz 99.9 1.8E-22 3.9E-27 232.4 21.5 222 499-730 255-489 (501)
386 TIGR00630 uvra excinuclease AB 99.9 2.6E-22 5.7E-27 251.8 22.6 126 590-731 789-923 (924)
387 KOG0927 Predicted transporter 99.9 6.8E-23 1.5E-27 236.6 13.8 213 501-731 75-307 (614)
388 COG1245 Predicted ATPase, RNas 99.9 8.3E-22 1.8E-26 223.6 16.5 189 500-717 341-530 (591)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.8E-21 3.8E-26 206.5 15.3 166 519-718 12-190 (198)
390 cd03275 ABC_SMC1_euk Eukaryoti 99.9 4.7E-22 1E-26 217.2 9.8 183 527-721 21-236 (247)
391 COG4170 SapD ABC-type antimicr 99.9 2.1E-21 4.6E-26 202.0 11.4 227 502-732 4-247 (330)
392 KOG0062 ATPase component of AB 99.8 1.7E-21 3.8E-26 224.0 10.0 205 499-732 78-284 (582)
393 KOG0060 Long-chain acyl-CoA tr 99.8 2.2E-20 4.8E-25 217.3 18.3 206 500-720 432-643 (659)
394 KOG0066 eIF2-interacting prote 99.8 8.5E-21 1.8E-25 213.0 13.7 201 501-730 586-788 (807)
395 KOG2355 Predicted ABC-type tra 99.8 1.1E-19 2.4E-24 189.0 16.1 212 500-734 12-238 (291)
396 KOG0062 ATPase component of AB 99.8 4.5E-19 9.7E-24 204.4 15.7 208 501-734 362-570 (582)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.8 7E-19 1.5E-23 188.8 14.8 80 640-720 124-211 (213)
398 cd03280 ABC_MutS2 MutS2 homolo 99.8 6.4E-19 1.4E-23 186.7 12.3 153 518-726 16-172 (200)
399 COG1245 Predicted ATPase, RNas 99.8 1E-18 2.2E-23 198.7 12.5 168 526-716 97-286 (591)
400 PRK00635 excinuclease ABC subu 99.8 8.1E-18 1.7E-22 220.1 20.3 128 590-733 1660-1796(1809)
401 cd03239 ABC_SMC_head The struc 99.8 6.5E-18 1.4E-22 176.6 15.7 75 643-719 95-173 (178)
402 COG0178 UvrA Excinuclease ATPa 99.8 1.7E-17 3.7E-22 199.3 20.5 129 590-733 783-919 (935)
403 cd03283 ABC_MutS-like MutS-lik 99.8 1.3E-18 2.9E-23 184.8 8.9 136 516-704 14-150 (199)
404 COG2401 ABC-type ATPase fused 99.8 5.4E-18 1.2E-22 190.7 13.8 181 516-721 396-587 (593)
405 cd03241 ABC_RecN RecN ATPase i 99.7 6.1E-18 1.3E-22 188.0 12.8 76 642-720 170-249 (276)
406 cd03227 ABC_Class2 ABC-type Cl 99.7 4.2E-17 9E-22 167.5 13.5 74 643-718 78-155 (162)
407 KOG0064 Peroxisomal long-chain 99.7 2.2E-17 4.8E-22 190.0 10.1 186 501-705 481-672 (728)
408 KOG0066 eIF2-interacting prote 99.7 1.1E-17 2.4E-22 188.2 7.0 222 499-733 262-499 (807)
409 cd03285 ABC_MSH2_euk MutS2 hom 99.7 3.2E-17 7E-22 177.1 9.9 153 515-727 16-175 (222)
410 PRK00349 uvrA excinuclease ABC 99.7 3.7E-16 8E-21 197.2 15.9 136 589-732 435-584 (943)
411 TIGR00630 uvra excinuclease AB 99.7 6E-16 1.3E-20 195.0 16.6 135 590-732 434-582 (924)
412 cd03243 ABC_MutS_homologs The 99.6 3.4E-16 7.4E-21 166.1 8.1 154 521-729 21-175 (202)
413 cd03282 ABC_MSH4_euk MutS4 hom 99.6 5.6E-16 1.2E-20 165.5 9.0 137 515-704 15-153 (204)
414 cd03242 ABC_RecF RecF is a rec 99.6 1.1E-14 2.3E-19 161.7 17.7 73 642-719 183-267 (270)
415 cd03284 ABC_MutS1 MutS1 homolo 99.5 3.6E-14 7.7E-19 152.9 11.1 159 515-731 17-179 (216)
416 KOG0063 RNAse L inhibitor, ABC 99.5 7.8E-14 1.7E-18 158.1 13.3 177 516-717 349-531 (592)
417 TIGR02858 spore_III_AA stage I 99.5 9E-14 2E-18 154.4 11.1 140 530-731 112-267 (270)
418 smart00534 MUTSac ATPase domai 99.4 2.2E-13 4.8E-18 143.0 5.2 67 643-712 62-130 (185)
419 TIGR01069 mutS2 MutS2 family p 99.4 9.7E-13 2.1E-17 164.5 10.4 133 522-705 314-448 (771)
420 PF01061 ABC2_membrane: ABC-2 99.4 1E-13 2.3E-18 144.3 1.1 197 860-1056 1-209 (210)
421 PF02463 SMC_N: RecF/RecN/SMC 99.4 3.1E-13 6.7E-18 144.7 4.4 74 642-718 136-213 (220)
422 cd03281 ABC_MSH5_euk MutS5 hom 99.4 3.9E-12 8.5E-17 136.8 12.7 133 518-705 18-157 (213)
423 PRK00064 recF recombination pr 99.4 2.5E-11 5.4E-16 140.4 19.5 74 642-719 273-357 (361)
424 KOG0063 RNAse L inhibitor, ABC 99.3 8.8E-12 1.9E-16 141.8 10.6 165 527-717 98-287 (592)
425 cd00820 PEPCK_HprK Phosphoenol 99.3 4.5E-12 9.7E-17 122.2 6.9 73 516-599 2-77 (107)
426 cd03287 ABC_MSH3_euk MutS3 hom 99.2 5.4E-11 1.2E-15 128.9 13.0 137 516-704 18-156 (222)
427 PTZ00132 GTP-binding nuclear p 99.2 1.9E-11 4.2E-16 130.4 8.1 45 646-690 156-205 (215)
428 PHA02562 46 endonuclease subun 99.1 6.9E-11 1.5E-15 143.5 9.3 76 641-720 467-553 (562)
429 PRK00409 recombination and DNA 99.1 4.3E-11 9.4E-16 150.2 7.7 73 642-716 390-463 (782)
430 TIGR00634 recN DNA repair prot 99.1 9.6E-11 2.1E-15 142.9 9.8 76 641-719 439-518 (563)
431 TIGR00618 sbcc exonuclease Sbc 99.1 1.7E-10 3.8E-15 149.8 11.6 79 640-719 948-1036(1042)
432 PRK08533 flagellar accessory p 99.1 7.5E-10 1.6E-14 120.6 14.5 148 500-701 6-162 (230)
433 PF13304 AAA_21: AAA domain; P 99.1 7.7E-11 1.7E-15 123.3 6.4 63 641-703 235-300 (303)
434 PRK10869 recombination and rep 99.1 2.1E-10 4.5E-15 139.5 10.5 75 642-719 430-508 (553)
435 COG0178 UvrA Excinuclease ATPa 99.1 9.7E-10 2.1E-14 133.5 15.9 136 589-732 427-576 (935)
436 cd01128 rho_factor Transcripti 99.1 6.5E-11 1.4E-15 130.4 5.0 76 640-721 127-211 (249)
437 cd03286 ABC_MSH6_euk MutS6 hom 99.1 3.2E-10 6.9E-15 122.7 8.7 138 515-704 16-155 (218)
438 PRK07721 fliI flagellum-specif 99.1 5.5E-10 1.2E-14 131.8 11.2 174 516-730 146-340 (438)
439 cd01124 KaiC KaiC is a circadi 99.0 2.3E-09 5E-14 111.3 13.0 88 625-717 59-163 (187)
440 PRK10246 exonuclease subunit S 99.0 5.6E-10 1.2E-14 144.8 8.1 78 640-718 947-1032(1047)
441 PRK03918 chromosome segregatio 99.0 1.4E-09 3.1E-14 138.9 10.1 77 640-718 786-868 (880)
442 cd01120 RecA-like_NTPases RecA 98.9 2.5E-09 5.3E-14 106.9 8.6 63 643-705 68-140 (165)
443 TIGR00606 rad50 rad50. This fa 98.9 3E-09 6.5E-14 141.1 10.0 69 641-710 1198-1277(1311)
444 PRK13695 putative NTPase; Prov 98.9 9.9E-10 2.1E-14 114.0 3.9 77 642-725 78-156 (174)
445 COG3910 Predicted ATPase [Gene 98.9 4E-08 8.6E-13 102.6 14.9 76 643-720 130-205 (233)
446 PRK01156 chromosome segregatio 98.9 6.4E-09 1.4E-13 133.4 10.8 80 640-721 799-888 (895)
447 TIGR02788 VirB11 P-type DNA tr 98.8 1.1E-08 2.3E-13 116.2 9.7 143 521-732 136-280 (308)
448 PRK13830 conjugal transfer pro 98.8 3.3E-08 7.2E-13 125.5 15.1 70 657-727 649-727 (818)
449 PRK06793 fliI flagellum-specif 98.8 2.6E-08 5.6E-13 117.2 11.5 168 502-727 131-305 (432)
450 TIGR02168 SMC_prok_B chromosom 98.7 1.5E-08 3.2E-13 132.4 8.0 75 640-717 1087-1165(1179)
451 TIGR03062 pip_yhgE_Cterm YhgE/ 98.7 6.7E-07 1.5E-11 95.1 16.7 148 940-1106 53-205 (208)
452 cd01131 PilT Pilus retraction 98.6 1.2E-07 2.6E-12 101.1 10.4 57 652-717 66-122 (198)
453 PRK06067 flagellar accessory p 98.6 2E-07 4.3E-12 101.4 12.1 75 643-717 101-186 (234)
454 PRK02224 chromosome segregatio 98.6 6.4E-08 1.4E-12 124.1 9.4 78 640-719 779-869 (880)
455 PRK06995 flhF flagellar biosyn 98.6 9.1E-08 2E-12 114.1 9.9 151 518-700 245-400 (484)
456 smart00382 AAA ATPases associa 98.6 1.2E-06 2.6E-11 83.7 15.3 58 643-700 61-124 (148)
457 TIGR02169 SMC_prok_A chromosom 98.6 7.2E-08 1.6E-12 126.3 8.2 76 640-718 1072-1151(1164)
458 TIGR01247 drrB daunorubicin re 98.6 7.1E-06 1.5E-10 89.0 22.0 152 934-1102 77-234 (236)
459 cd01125 repA Hexameric Replica 98.5 2.7E-07 5.8E-12 100.9 9.6 136 529-703 1-160 (239)
460 TIGR03238 dnd_assoc_3 dnd syst 98.5 5.6E-08 1.2E-12 114.5 4.3 51 516-570 19-70 (504)
461 TIGR00025 Mtu_efflux ABC trans 98.5 2.5E-05 5.4E-10 84.8 23.5 213 874-1105 2-229 (232)
462 TIGR01291 nodJ ABC-2 type tran 98.5 2.9E-05 6.3E-10 85.8 24.1 223 861-1104 6-247 (253)
463 cd01130 VirB11-like_ATPase Typ 98.4 5.4E-07 1.2E-11 94.9 8.2 82 521-604 17-100 (186)
464 PRK13891 conjugal transfer pro 98.4 2.4E-06 5.2E-11 109.2 14.2 53 653-705 680-733 (852)
465 TIGR02655 circ_KaiC circadian 98.4 1.7E-08 3.7E-13 121.3 -5.0 165 519-717 10-190 (484)
466 TIGR00611 recf recF protein. A 98.4 5E-07 1.1E-11 105.0 7.2 59 642-703 275-342 (365)
467 COG0419 SbcC ATPase involved i 98.3 1.2E-06 2.6E-11 112.9 10.2 80 639-720 812-899 (908)
468 cd02023 UMPK Uridine monophosp 98.3 5.5E-07 1.2E-11 95.3 4.5 113 531-675 1-113 (198)
469 TIGR01420 pilT_fam pilus retra 98.3 2.6E-06 5.6E-11 98.3 10.4 57 652-717 187-243 (343)
470 TIGR03881 KaiC_arch_4 KaiC dom 98.3 2.6E-07 5.6E-12 99.8 1.5 42 523-567 14-57 (229)
471 PRK07196 fliI flagellum-specif 98.2 1.7E-06 3.8E-11 102.1 7.6 88 515-603 142-239 (434)
472 PRK06002 fliI flagellum-specif 98.2 4E-06 8.7E-11 99.2 8.8 82 501-586 139-230 (450)
473 PRK05399 DNA mismatch repair p 98.2 4.3E-06 9.3E-11 106.9 9.1 137 517-712 596-738 (854)
474 PRK15066 inner membrane transp 98.1 0.0005 1.1E-08 76.0 24.1 232 859-1108 7-253 (257)
475 PLN03210 Resistant to P. syrin 98.1 5.9E-06 1.3E-10 109.1 10.0 44 522-566 200-243 (1153)
476 TIGR01026 fliI_yscN ATPase Fli 98.1 1.2E-05 2.7E-10 95.5 11.7 173 516-730 151-345 (440)
477 PRK13898 type IV secretion sys 98.1 4.6E-05 1E-09 97.2 17.3 50 656-705 638-688 (800)
478 TIGR02680 conserved hypothetic 98.1 4.1E-06 8.9E-11 111.7 7.6 59 641-702 1246-1316(1353)
479 TIGR03861 phenyl_ABC_PedC alco 98.1 0.00058 1.3E-08 75.2 23.0 194 859-1053 1-218 (253)
480 PRK09825 idnK D-gluconate kina 98.1 2.5E-06 5.4E-11 89.5 3.6 66 528-599 2-69 (176)
481 PRK14079 recF recombination pr 98.1 7.2E-06 1.6E-10 94.9 7.6 71 643-722 264-343 (349)
482 cd01122 GP4d_helicase GP4d_hel 98.0 0.00013 2.8E-09 80.9 15.6 35 517-551 18-52 (271)
483 PRK13873 conjugal transfer ATP 98.0 5.9E-05 1.3E-09 96.4 14.4 48 657-704 632-680 (811)
484 PRK00454 engB GTP-binding prot 97.9 0.00011 2.4E-09 76.7 12.8 46 643-692 148-196 (196)
485 cd01876 YihA_EngB The YihA (En 97.8 3.5E-05 7.6E-10 76.8 6.2 42 643-688 123-169 (170)
486 TIGR00235 udk uridine kinase. 97.8 9E-06 1.9E-10 87.0 2.0 28 527-554 4-31 (207)
487 cd00009 AAA The AAA+ (ATPases 97.8 0.00011 2.3E-09 71.2 8.9 55 648-703 72-131 (151)
488 TIGR00767 rho transcription te 97.8 5.4E-05 1.2E-09 88.5 7.8 52 501-553 130-192 (415)
489 PRK01889 GTPase RsgA; Reviewed 97.7 3.7E-05 8E-10 89.4 6.2 78 519-599 185-262 (356)
490 PRK06315 type III secretion sy 97.7 5.8E-05 1.3E-09 89.7 7.8 110 516-628 152-277 (442)
491 PF13555 AAA_29: P-loop contai 97.7 3.4E-05 7.3E-10 67.8 4.2 35 519-553 12-47 (62)
492 PF13558 SbcCD_C: Putative exo 97.7 6.6E-05 1.4E-09 70.6 6.4 46 642-687 32-90 (90)
493 PRK10078 ribose 1,5-bisphospho 97.7 3.6E-05 7.9E-10 81.0 5.1 36 529-569 2-37 (186)
494 TIGR02903 spore_lon_C ATP-depe 97.7 7.9E-05 1.7E-09 92.4 8.8 112 528-687 174-291 (615)
495 TIGR00554 panK_bact pantothena 97.7 2.6E-05 5.7E-10 88.1 4.0 73 530-603 63-137 (290)
496 TIGR02524 dot_icm_DotB Dot/Icm 97.7 5.7E-05 1.2E-09 87.9 6.1 73 527-599 132-207 (358)
497 PF00488 MutS_V: MutS domain V 97.6 0.001 2.2E-08 73.2 15.3 47 658-704 120-168 (235)
498 COG0842 ABC-type multidrug tra 97.6 0.003 6.4E-08 68.7 18.9 160 934-1110 118-285 (286)
499 TIGR00152 dephospho-CoA kinase 97.6 5.3E-05 1.2E-09 79.8 5.1 72 645-718 60-132 (188)
500 PF09818 ABC_ATPase: Predicted 97.6 0.00091 2E-08 78.7 15.5 75 643-718 323-413 (448)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-86 Score=802.37 Aligned_cols=563 Identities=31% Similarity=0.516 Sum_probs=450.0
Q ss_pred CceEEEEEeEEEEEcCC---cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC-CCceeEEEECCeeCCccc
Q 001270 498 PLIEVSFKDLTLTLKGK---NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA-CKATGLILINGKNEPIHS 573 (1111)
Q Consensus 498 ~~i~L~~~nLs~~y~~~---~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~-~~~sG~I~inG~~~~~~~ 573 (1111)
..++++|+|++++.+.+ .+++|+|||++++|||++||||||||||||||++|+|+... ...+|+|++||++.+.+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~ 101 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRS 101 (613)
T ss_pred ccceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhh
Confidence 34678999999998765 48999999999999999999999999999999999998765 368999999998877788
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaI 653 (1111)
+++.+|||.|||.+++++||+|+|.|.+.+|++..+++.+++++|++++++|||.+++|+++|+...||+||||||||+|
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSI 181 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHH
Confidence 99999999999999999999999999999999988888999999999999999999999999998889999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
|.+|++||.||+|||||||||+.++..++++|+++|++|+|||+++|||+..++++||++++|.+| +++|+|+++++.+
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G-~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEG-EVVYSGSPRELLE 260 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCC-cEEEecCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999975 8999999999999
Q ss_pred HHHhCCCCCCCCCCchhHHHHhhhccccCCCCCCCcccccchhhhccCCCCCCccccccccccCCCCCCCCCCCCCCccc
Q 001270 734 YFAGLGINVPERVNPPDHLIDILEGIVKPSANSNVTYEDLPVRWMLHNGYPVPPDMQKNASRFVMPPEGVNPANGINLAT 813 (1111)
Q Consensus 734 ~f~~~g~~~p~~~npad~~ldi~~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1111)
||+..|++||++.||+||++|+++++ .. .....+....|...+.++. .+.
T Consensus 261 ff~~~G~~~P~~~Npadf~l~l~s~~-~~----~~~~~~~~~~~~~~~~~~~-~~~------------------------ 310 (613)
T KOG0061|consen 261 FFSSLGFPCPELENPADFLLDLLSVD-SG----TRELEEAVRIAKLINKFSQ-TDN------------------------ 310 (613)
T ss_pred HHHhCCCCCCCcCChHHHHHHHHccC-CC----chhHHhHHHHHHHhhhccc-cch------------------------
Confidence 99999999999999999999999754 00 1111111112221111110 000
Q ss_pred chhhhhhchhhhHHhhhhhhhhccccccccccccccCcCcCCCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 001270 814 TEVEEKSFAGELWQDMKNNVEFHKDHIRLNFFKSKDLSKRKTPGVFQQYRFFLGRVAKQRLREAKPQAVDFLILLLAGAC 893 (1111)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~Q~~~Ll~R~~~q~~Rd~~~~~~~~~~~ll~Gl~ 893 (1111)
..+.. ....+. +...........++||.|++.|++|.+++.+|++.+...+.++.+++|++
T Consensus 311 ---~~~~~-----~~~~~~-----------~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~ 371 (613)
T KOG0061|consen 311 ---LKKTL-----EALEKS-----------LSTSKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLL 371 (613)
T ss_pred ---hhhhH-----HHHhhh-----------cccccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHH
Confidence 00000 000000 00011111112789999999999999999999999999999999999999
Q ss_pred Hhhccc-CCc---cccchhhHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHh
Q 001270 894 LGSLSK-VGD---ENFGAAGYSHTIIAVS-LLCKIAALRTFSLEKLQYWRERASGMSS-LAYFLAKDTIDHFNTVIKPVV 967 (1111)
Q Consensus 894 lG~l~~-~~~---~~~g~~g~~f~via~~-ll~~i~al~~F~~ER~vf~REr~sG~y~-~aYflAk~l~dlp~~ii~pii 967 (1111)
+|+++. .+. ..+.+.|++|+.+.+. +..+++++..|+.||.+|.||+.+|+|+ .+||+|+.++++|+.++.|++
T Consensus 372 lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~i 451 (613)
T KOG0061|consen 372 LGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSII 451 (613)
T ss_pred HHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 999874 222 2335667666666555 5556778999999999999999999987 599999999999999999999
Q ss_pred hhhhhhhccCCcchHHHHHHHHHHHHHH----HHHHHHHHHHhcCc-hhHHHHH-HH-HHH--HhhhhccCCcccchhhc
Q 001270 968 YLSMFYFFTNPRSSFADNYAVLLCLVYC----VTGIAYALAIFFEP-GSAQLWS-VL-LPV--VLTLIATRKTDSEFMKN 1038 (1111)
Q Consensus 968 f~si~Yfm~glr~~~~~~f~~~lll~~~----~~~l~~~l~i~~~~-~~a~l~~-~l-~p~--~~~l~~~~~~iP~~l~W 1038 (1111)
|++|+|||+|+++++.. |++++++++. ..+++++++..+.. ..+.... ++ +++ +.+++++.++||.||+|
T Consensus 452 f~~i~Y~m~gl~~~~~~-f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w 530 (613)
T KOG0061|consen 452 FSSIVYWMVGLNPGLSR-FLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRW 530 (613)
T ss_pred HHHHHHHhccCCcchHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHH
Confidence 99999999999888643 3333333333 33555555554432 1222211 11 111 22357788899999999
Q ss_pred cccccHHHHHHHHHHHhcccc--ccCcccc-ccc-----chhhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001270 1039 IANLCYPKWALQAFVVANAER--YYGVWLI-TRC-----GLLMKSGYDLQEWGLCIGILIVYGVVSRIIAFFGMLIFQKR 1110 (1111)
Q Consensus 1039 l~yiS~~rYa~eal~ine~~~--y~g~~~~-~~c-----~~L~~~G~d~~~~~~~i~iLi~~~v~frvlayl~L~~~~k~ 1110 (1111)
++|+||+||++||+++|++.. +...... ..| ..+...+++..+.|.|+++|++++++||+++|++|++..|+
T Consensus 531 ~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~ 610 (613)
T KOG0061|consen 531 ISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKR 610 (613)
T ss_pred HHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999998642 1111100 122 24778899999999999999999999999999999998776
Q ss_pred C
Q 001270 1111 K 1111 (1111)
Q Consensus 1111 ~ 1111 (1111)
+
T Consensus 611 ~ 611 (613)
T KOG0061|consen 611 K 611 (613)
T ss_pred c
Confidence 3
No 2
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.5e-82 Score=773.65 Aligned_cols=560 Identities=27% Similarity=0.400 Sum_probs=417.6
Q ss_pred EEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEcc
Q 001270 504 FKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQ 583 (1111)
Q Consensus 504 ~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Q 583 (1111)
.+|++++| +++.+|+|||+++++||++||+|||||||||||++|+|+..+...+|+|.+||++... ..++++|||+|
T Consensus 71 ~~~l~~~~--~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q 147 (659)
T PLN03211 71 ISDETRQI--QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-QILKRTGFVTQ 147 (659)
T ss_pred cccccccC--CCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch-hhccceEEECc
Confidence 34555555 3467999999999999999999999999999999999987543358999999998643 34567999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCE
Q 001270 584 DDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSL 663 (1111)
Q Consensus 584 d~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~l 663 (1111)
++.+++.+||+|||.|.+..+.+....++++.++++++++.+||.+..|+.+|+...++|||||||||+||++|+.+|+|
T Consensus 148 ~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~i 227 (659)
T PLN03211 148 DDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 227 (659)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCE
Confidence 99999999999999998766544334455556678999999999999999998877889999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHHHhCCCCCC
Q 001270 664 LLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYFAGLGINVP 743 (1111)
Q Consensus 664 LLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f~~~g~~~p 743 (1111)
|||||||+|||+.++..+++.|++++++|+|||+++||++..+++++|++++|.+ |+++++|+++++.+||+.+|++||
T Consensus 228 LlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~-G~iv~~G~~~~~~~~f~~~G~~~P 306 (659)
T PLN03211 228 LILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFGKGSDAMAYFESVGFSPS 306 (659)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecC-CcEEEECCHHHHHHHHHHCCCCCC
Confidence 9999999999999999999999999888999999999998667899999999986 588999999999999999999999
Q ss_pred CCCCchhHHHHhhhccccCCCCCCCcc----cccchhhhccCCCCCCccccccccccCCCCCCCCCCCCCCcccchhhhh
Q 001270 744 ERVNPPDHLIDILEGIVKPSANSNVTY----EDLPVRWMLHNGYPVPPDMQKNASRFVMPPEGVNPANGINLATTEVEEK 819 (1111)
Q Consensus 744 ~~~npad~~ldi~~~~~~~~~~~~~~~----~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1111)
.+.||+||++|++.+....+....... +.+...|... ..+.... ... ..
T Consensus 307 ~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~---~~~--------------------~~ 359 (659)
T PLN03211 307 FPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL----LAPKVKA---AIE--------------------MS 359 (659)
T ss_pred CCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh----ccHHHHH---HHh--------------------hh
Confidence 999999999999865321100000000 0000011000 0000000 000 00
Q ss_pred hchhhhHHhhhhhhhhccccccccccccc-cCcCcCCCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhcc
Q 001270 820 SFAGELWQDMKNNVEFHKDHIRLNFFKSK-DLSKRKTPGVFQQYRFFLGRVAKQRLREAKPQAVDFLILLLAGACLGSLS 898 (1111)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~s~~~Q~~~Ll~R~~~q~~Rd~~~~~~~~~~~ll~Gl~lG~l~ 898 (1111)
...+........ .. .... .......++||+|+.+|++|.+++ +|++.+..+++++.+++|+++|++|
T Consensus 360 ----~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf 427 (659)
T PLN03211 360 ----HFPQANARFVGS-----AS--TKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMW 427 (659)
T ss_pred ----hhhcchhhhhhc-----cc--ccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 00 0000 011224468999999999999988 8999988999999999999999987
Q ss_pred cCC--ccccchhhHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001270 899 KVG--DENFGAAGYSHTII-AVSLLCKIAALRTFSLEKLQYWRERASGMSS-LAYFLAKDTIDHFNTVIKPVVYLSMFYF 974 (1111)
Q Consensus 899 ~~~--~~~~g~~g~~f~vi-a~~ll~~i~al~~F~~ER~vf~REr~sG~y~-~aYflAk~l~dlp~~ii~piif~si~Yf 974 (1111)
... .+.+++.|++|+++ .+.++++++++..|+.||.+|+||+.+|+|+ .+||+||.++|+|+.++.|++|.+|+||
T Consensus 428 ~~~~~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~ 507 (659)
T PLN03211 428 WHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYW 507 (659)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeE
Confidence 532 23455677776654 4456677889999999999999999999997 5999999999999999999999999999
Q ss_pred ccCCcchHHHHHH---HHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHh----hhhccCCcccchhhccccccHHH
Q 001270 975 FTNPRSSFADNYA---VLLCLVYCVTGIAYALAIFFE-PGSAQLWSVLLPVVL----TLIATRKTDSEFMKNIANLCYPK 1046 (1111)
Q Consensus 975 m~glr~~~~~~f~---~~lll~~~~~~l~~~l~i~~~-~~~a~l~~~l~p~~~----~l~~~~~~iP~~l~Wl~yiS~~r 1046 (1111)
|+|+++++..+|+ +++++.++..+++++++.++. ...|+..+.++.+++ +++++ +||.||+|++|+||++
T Consensus 508 m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~ 585 (659)
T PLN03211 508 MAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTF 585 (659)
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHH
Confidence 9999987654332 223333444566767766543 233433332222222 23443 7999999999999999
Q ss_pred HHHHHHHHhccccccCc-----cc------ccccchhhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001270 1047 WALQAFVVANAERYYGV-----WL------ITRCGLLMKSGYDLQEWGLCIGILIVYGVVSRIIAFFGMLIFQ 1108 (1111)
Q Consensus 1047 Ya~eal~ine~~~y~g~-----~~------~~~c~~L~~~G~d~~~~~~~i~iLi~~~v~frvlayl~L~~~~ 1108 (1111)
|+||++++||+..-... +. ...|..+...+++..+.|.++++|+++.++||+++|++|++.+
T Consensus 586 y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 586 YSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred HHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999986311100 10 0124445555566667788999999999999999999998654
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=6.9e-82 Score=767.26 Aligned_cols=551 Identities=26% Similarity=0.397 Sum_probs=426.5
Q ss_pred cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC-CceeEEEECCeeCCcccccccEEEEccCCCCCCCCCH
Q 001270 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC-KATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTV 593 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV 593 (1111)
++.+|+|||+++++||++||+|||||||||||++|+|+..+. ..+|+|.+||++.+...+++.+|||+|++.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 577999999999999999999999999999999999986532 2489999999987655678899999999999999999
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCcc-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001270 594 EENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVE-KRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672 (1111)
Q Consensus 594 ~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~-~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSG 672 (1111)
+|||.|++.++.+....++++.++++++++.+||.+.+|+.+|+.+ .++|||||||||+||+||+.+|+||||||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999988766655666777789999999999999999999743 578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHHHhCCCCCCCCCCchhHH
Q 001270 673 LDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYFAGLGINVPERVNPPDHL 752 (1111)
Q Consensus 673 LD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f~~~g~~~p~~~npad~~ 752 (1111)
||+.++..+++.|++++++|+|||+++|||+.++++++|++++|.+ |+++|+|+++++.+||+++|++||.+.||+||+
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 9999999999999999888999999999998778899999999986 689999999999999999999999999999999
Q ss_pred HHhhhccccCCCCCCCcccccchhhhccCCCCCCccccccccccCCCCCCCCCCCCCCcccchhhhhhchhhhHHhhhhh
Q 001270 753 IDILEGIVKPSANSNVTYEDLPVRWMLHNGYPVPPDMQKNASRFVMPPEGVNPANGINLATTEVEEKSFAGELWQDMKNN 832 (1111)
Q Consensus 753 ldi~~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1111)
++++..............+++...|.. + +..++....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------s------------------------~~~~~~~~~ 312 (617)
T TIGR00955 276 VQVLAVIPGSENESRERIEKICDSFAV-------------------S------------------------DIGRDMLVN 312 (617)
T ss_pred HHHhhcCcccccchHHHHHHHHHHHhc-------------------c------------------------hhhHHHHHH
Confidence 998864321110000000000000100 0 000000000
Q ss_pred hhhc---cccccccccccccCcCcCCCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhcccC-Cc---ccc
Q 001270 833 VEFH---KDHIRLNFFKSKDLSKRKTPGVFQQYRFFLGRVAKQRLREAKPQAVDFLILLLAGACLGSLSKV-GD---ENF 905 (1111)
Q Consensus 833 ~~~~---~~~~~~~~~~~~~~~~r~~~s~~~Q~~~Ll~R~~~q~~Rd~~~~~~~~~~~ll~Gl~lG~l~~~-~~---~~~ 905 (1111)
.... ...... ........+..+++++|+++|++|.+++.+||+.++.+++++.+++|+++|++|.. +. +.+
T Consensus 313 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~ 390 (617)
T TIGR00955 313 TNLWSGKAGGLVK--DSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQ 390 (617)
T ss_pred hhhhhcccccccc--ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 0000 000000 00000112346789999999999999999999999999999999999999998742 22 234
Q ss_pred chhhHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcchHH
Q 001270 906 GAAGYSHTIIA-VSLLCKIAALRTFSLEKLQYWRERASGMSS-LAYFLAKDTIDHFNTVIKPVVYLSMFYFFTNPRSSFA 983 (1111)
Q Consensus 906 g~~g~~f~via-~~ll~~i~al~~F~~ER~vf~REr~sG~y~-~aYflAk~l~dlp~~ii~piif~si~Yfm~glr~~~~ 983 (1111)
++.|++|+++. +++.+++.++..|+.||.+|+||+.+|+|+ .+||+||.++|+|..++.+++|.+|+|||+|+++++.
T Consensus 391 ~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~ 470 (617)
T TIGR00955 391 NINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGAT 470 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHH
Confidence 55666665443 455556788899999999999999999997 5999999999999999999999999999999998865
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHh----hhhccCCcccchhhccccccHHHHHHHHHHHh
Q 001270 984 DNYAV---LLCLVYCVTGIAYALAIFFEP-GSAQLWSVLLPVVL----TLIATRKTDSEFMKNIANLCYPKWALQAFVVA 1055 (1111)
Q Consensus 984 ~~f~~---~lll~~~~~~l~~~l~i~~~~-~~a~l~~~l~p~~~----~l~~~~~~iP~~l~Wl~yiS~~rYa~eal~in 1055 (1111)
.+|++ ++++.++..+++++++.++.. ..|...+.++.+++ +++++.++||.||+|++|+||++|++|++++|
T Consensus 471 ~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~n 550 (617)
T TIGR00955 471 HFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLIN 550 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHH
Confidence 43322 222333445677777665533 33443333222222 24567889999999999999999999999999
Q ss_pred ccccccC-cc----ccccc-----chhhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 001270 1056 NAERYYG-VW----LITRC-----GLLMKSGYDLQEWGLCIGILIVYGVVSRIIAFFGMLIFQKRK 1111 (1111)
Q Consensus 1056 e~~~y~g-~~----~~~~c-----~~L~~~G~d~~~~~~~i~iLi~~~v~frvlayl~L~~~~k~~ 1111 (1111)
|+..... .+ ....| ..|..+|++.+++|.++++|+++.++||+++|++|++..|++
T Consensus 551 ef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 616 (617)
T TIGR00955 551 QWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRK 616 (617)
T ss_pred HhCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9643111 00 01114 246788999889999999999999999999999999877663
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.8e-78 Score=787.15 Aligned_cols=562 Identities=24% Similarity=0.380 Sum_probs=430.5
Q ss_pred ceEEEEEeEEEEEcC-----------CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCe
Q 001270 499 LIEVSFKDLTLTLKG-----------KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGK 567 (1111)
Q Consensus 499 ~i~L~~~nLs~~y~~-----------~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~ 567 (1111)
...++|+||++.++. +.+.+|+|||+++++|+++|||||||||||||||+|+|+...++.+|+|.+||.
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~ 944 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF 944 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCc
Confidence 357999999999852 234799999999999999999999999999999999998654457899999998
Q ss_pred eCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 001270 568 NEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 568 ~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQ 647 (1111)
+.....+++.+|||+|++.+++.+||+|||.|++.++.+...+..++.+.++++++.+||.+..|+.+|....++|||||
T Consensus 945 ~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGe 1024 (1470)
T PLN03140 945 PKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024 (1470)
T ss_pred cCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHH
Confidence 76544567789999999999999999999999987765544455566678999999999999999999876668999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++||++..+++.+|++++|.+||+++|+|+
T Consensus 1025 rkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence 99999999999999999999999999999999999999999988999999999999767899999999988889999999
Q ss_pred H----hhHHHHHHhC-CC-CCCCCCCchhHHHHhhhccccCCCCCCCcccccchhhhccCCCCCCccccccccccCCCCC
Q 001270 728 V----KKVEEYFAGL-GI-NVPERVNPPDHLIDILEGIVKPSANSNVTYEDLPVRWMLHNGYPVPPDMQKNASRFVMPPE 801 (1111)
Q Consensus 728 ~----~~l~~~f~~~-g~-~~p~~~npad~~ldi~~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1111)
+ +++.+||+++ |. .||+..|||||++|++...... . ...++...|.....
T Consensus 1105 ~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~----~-~~~d~~~~~~~s~~------------------- 1160 (1470)
T PLN03140 1105 LGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV----K-LGIDFAEHYKSSSL------------------- 1160 (1470)
T ss_pred cccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc----c-ccchHHHHHhccHH-------------------
Confidence 6 5799999997 66 4999999999999987532110 0 01122233321100
Q ss_pred CCCCCCCCCcccchhhhhhchhhhHHhhhhhhhhccccccccccccccCcCcCCCchhHHHHHHHHHHHHHhhcchhhHH
Q 001270 802 GVNPANGINLATTEVEEKSFAGELWQDMKNNVEFHKDHIRLNFFKSKDLSKRKTPGVFQQYRFFLGRVAKQRLREAKPQA 881 (1111)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~Q~~~Ll~R~~~q~~Rd~~~~~ 881 (1111)
++.....++........ ........+..+++++|++++++|.++++||||.+..
T Consensus 1161 ------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~ 1214 (1470)
T PLN03140 1161 ------------------------YQRNKALVKELSTPPPG--ASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNL 1214 (1470)
T ss_pred ------------------------HHHHHHHHHHhccCCCC--ccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHH
Confidence 00000000000000000 0000112345678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccc-CCcc------ccchhhHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHhcCCCCh-HHHHHH
Q 001270 882 VDFLILLLAGACLGSLSK-VGDE------NFGAAGYSHTII-AVSLLCKIAALRTFSLEKLQYWRERASGMSS-LAYFLA 952 (1111)
Q Consensus 882 ~~~~~~ll~Gl~lG~l~~-~~~~------~~g~~g~~f~vi-a~~ll~~i~al~~F~~ER~vf~REr~sG~y~-~aYflA 952 (1111)
+++++.+++|+++|++|. .+++ .+++.|.+|+.+ .+++..+.+.++.|..||.+|+||+++|+|+ .+|++|
T Consensus 1215 ~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la 1294 (1470)
T PLN03140 1215 VRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIA 1294 (1470)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Confidence 999999999999999873 3321 223456555433 3334445667789999999999999999997 599999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHHH----HHHHHHHHHHHHHhcCc-hhHHHHHHHHH----HHh
Q 001270 953 KDTIDHFNTVIKPVVYLSMFYFFTNPRSSFADNYAVLLCL----VYCVTGIAYALAIFFEP-GSAQLWSVLLP----VVL 1023 (1111)
Q Consensus 953 k~l~dlp~~ii~piif~si~Yfm~glr~~~~~~f~~~lll----~~~~~~l~~~l~i~~~~-~~a~l~~~l~p----~~~ 1023 (1111)
+.++|+|..++.+++|.+|+|||+|++.++.. |++++++ .++.+++|.+++.++.. ..|...+.++. ++.
T Consensus 1295 ~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~-f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~ 1373 (1470)
T PLN03140 1295 QVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAK-FFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFS 1373 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHe
Confidence 99999999999999999999999999876543 3322222 33344566666544432 23333222222 222
Q ss_pred hhhccCCcccchhhccccccHHHHHHHHHHHhccccccCcccc------cccc--hhhhcccccCchhHHHHHHHHHHHH
Q 001270 1024 TLIATRKTDSEFMKNIANLCYPKWALQAFVVANAERYYGVWLI------TRCG--LLMKSGYDLQEWGLCIGILIVYGVV 1095 (1111)
Q Consensus 1024 ~l~~~~~~iP~~l~Wl~yiS~~rYa~eal~ine~~~y~g~~~~------~~c~--~L~~~G~d~~~~~~~i~iLi~~~v~ 1095 (1111)
+++++.++||.||+|++|+||++|+++|++.|++........+ ..|. .+..+||+.++.|.++++|+++.++
T Consensus 1374 Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~ 1453 (1470)
T PLN03140 1374 GFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVF 1453 (1470)
T ss_pred eeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHH
Confidence 3467889999999999999999999999999986422111100 1121 2567899988889999999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 001270 1096 SRIIAFFGMLIFQKRK 1111 (1111)
Q Consensus 1096 frvlayl~L~~~~k~~ 1111 (1111)
|++++++++++++..|
T Consensus 1454 f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140 1454 FAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999999987664
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.4e-77 Score=774.97 Aligned_cols=561 Identities=25% Similarity=0.358 Sum_probs=425.9
Q ss_pred eEEEEEeEEEEEc--CCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC-CceeEEEECCeeCCcccccc
Q 001270 500 IEVSFKDLTLTLK--GKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC-KATGLILINGKNEPIHSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~--~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~~~~r~ 576 (1111)
..|+++||+++|+ ++.+.+|+|||++|++||++||+|||||||||||++|+|+.... +++|+|.+||++.. ..+++
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-hhhhc
Confidence 3589999999995 23468999999999999999999999999999999999986422 46799999999874 35678
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.+|||+|++.+++.+||+|||.|++.++.+...++.++.++++++++.+||.+.+|+.+++. ..+|||||||||+||+|
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHH
Confidence 89999999999999999999999988776544555666678999999999999999999853 34799999999999999
Q ss_pred HhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH----hhH
Q 001270 657 MVMEPS-LLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV----KKV 731 (1111)
Q Consensus 657 Ll~~P~-lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~----~~l 731 (1111)
|+.+|+ ||||||||+|||+.++..|++.|++++++|+|||+++|||+..+++.+|++++|.+||+++|+|++ +++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~ 995 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchH
Confidence 999997 999999999999999999999999998889999999999997677889999999988899999997 568
Q ss_pred HHHHHhCCC-CCCCCCCchhHHHHhhhccccCCCCCCCcccccchhhhccCCCCCCccccccccccCCCCCCCCCCCCCC
Q 001270 732 EEYFAGLGI-NVPERVNPPDHLIDILEGIVKPSANSNVTYEDLPVRWMLHNGYPVPPDMQKNASRFVMPPEGVNPANGIN 810 (1111)
Q Consensus 732 ~~~f~~~g~-~~p~~~npad~~ldi~~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (1111)
.+||+..|+ +||++.||+||++|++...... . ..+++...|..... .....+.+
T Consensus 996 ~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~----~-~~~~~~~~~~~s~~------~~~~~~~~-------------- 1050 (1394)
T TIGR00956 996 INYFEKHGAPKCPEDANPAEWMLEVIGAAPGA----H-ANQDYHEVWRNSSE------YQAVKNEL-------------- 1050 (1394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHhhccccc----c-hhccHHHHHhcCHH------HHHHHHHH--------------
Confidence 999999996 9999999999999998643211 0 01223333421100 00000000
Q ss_pred cccchhhhhhchhhhHHhhhhhhhhccccccccccccccCcCcCCCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 001270 811 LATTEVEEKSFAGELWQDMKNNVEFHKDHIRLNFFKSKDLSKRKTPGVFQQYRFFLGRVAKQRLREAKPQAVDFLILLLA 890 (1111)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~Q~~~Ll~R~~~q~~Rd~~~~~~~~~~~ll~ 890 (1111)
....... ..... ........+..+++++|+++|++|.++++|||+.++.+++++++++
T Consensus 1051 ----------------~~~~~~~----~~~~~--~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~ 1108 (1394)
T TIGR00956 1051 ----------------DRLEAEL----SKAED--DNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFA 1108 (1394)
T ss_pred ----------------HHhhccc----ccCcc--ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 0000000 00000 0000011345678999999999999999999999999999999999
Q ss_pred HHHHhhcc-cCCc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHhcCCCChH-HHHHHHHHHHHHHHHHH
Q 001270 891 GACLGSLS-KVGD---ENFGAAGYSHTIIAVSLLCKIAALRTFSLEKLQY-WRERASGMSSL-AYFLAKDTIDHFNTVIK 964 (1111)
Q Consensus 891 Gl~lG~l~-~~~~---~~~g~~g~~f~via~~ll~~i~al~~F~~ER~vf-~REr~sG~y~~-aYflAk~l~dlp~~ii~ 964 (1111)
|+++|++| +.++ +..+++|.+|+.+.+..+....+++.|+.||.+| +||+++|+|+. +||+|+.++|+|+.++.
T Consensus 1109 ~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~ 1188 (1394)
T TIGR00956 1109 ALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVA 1188 (1394)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999986 3333 2344566666554444444567788999998886 89999999975 99999999999999999
Q ss_pred HHhhhhhhhhccCCcchHH----------HHHHHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHH----hhhhccC
Q 001270 965 PVVYLSMFYFFTNPRSSFA----------DNYAVLLCLVYCVTGIAYALAIFFEP-GSAQLWSVLLPVV----LTLIATR 1029 (1111)
Q Consensus 965 piif~si~Yfm~glr~~~~----------~~f~~~lll~~~~~~l~~~l~i~~~~-~~a~l~~~l~p~~----~~l~~~~ 1029 (1111)
+++|.+++|||+|++.++. .++++++++.++..++|++++.++.. ..|..+..++.++ .+++++.
T Consensus 1189 ~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~ 1268 (1394)
T TIGR00956 1189 GTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPP 1268 (1394)
T ss_pred HHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCCh
Confidence 9999999999999976532 22222333333445677776655432 2333332222222 2245678
Q ss_pred CcccchhhccccccHHHHHHHHHHHhccccccCcc-----------------------------------ccccc-----
Q 001270 1030 KTDSEFMKNIANLCYPKWALQAFVVANAERYYGVW-----------------------------------LITRC----- 1069 (1111)
Q Consensus 1030 ~~iP~~l~Wl~yiS~~rYa~eal~ine~~~y~g~~-----------------------------------~~~~c----- 1069 (1111)
++||.||+|++|+||++|++||++.|++....-.+ ....|
T Consensus 1269 ~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~ 1348 (1394)
T TIGR00956 1269 SRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQY 1348 (1394)
T ss_pred hHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCC
Confidence 89999999999999999999999999863211000 00013
Q ss_pred ----chhhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001270 1070 ----GLLMKSGYDLQEWGLCIGILIVYGVVSRIIAFFGMLIFQKR 1110 (1111)
Q Consensus 1070 ----~~L~~~G~d~~~~~~~i~iLi~~~v~frvlayl~L~~~~k~ 1110 (1111)
..|...|++.++.|.|+++|+++.+++ ++++++|++..|.
T Consensus 1349 ~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956 1349 SYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARV 1392 (1394)
T ss_pred CCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEEc
Confidence 136677888889999999999998888 9999999776543
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.1e-75 Score=760.18 Aligned_cols=562 Identities=19% Similarity=0.270 Sum_probs=413.3
Q ss_pred cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC--CCCceeEEEECCeeCCc--ccccccEEEEccCCCCCCC
Q 001270 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAI--ACKATGLILINGKNEPI--HSYKKIIGFVPQDDIVHGN 590 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~--~~~~sG~I~inG~~~~~--~~~r~~IgyV~Qd~~l~~~ 590 (1111)
.+.+|+|||+.+++||+++|+||||||||||||+|+|+.. ..+.+|+|.+||++... ..+++.++||+|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 4579999999999999999999999999999999999753 13579999999987532 2356779999999999999
Q ss_pred CCHHHHHHHHHHhhccc----cchHHHHHH-HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001270 591 LTVEENLWFHARCRLSA----HLAKADKVL-VIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLL 665 (1111)
Q Consensus 591 LTV~EnL~f~a~~~~~~----~~~~~~~~~-~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLL 665 (1111)
+||+|||.|++.++.+. ...+.+..+ .++++++.+||.+.+|+++|+...++|||||||||+||++|+.+|+|||
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999998766432 223333333 3567899999999999999988889999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHHHhCCCCCCC
Q 001270 666 LDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYFAGLGINVPE 744 (1111)
Q Consensus 666 LDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f~~~g~~~p~ 744 (1111)
|||||+|||+.++..+++.|++++++ |+|||+++||++..+++++|++++|.+ |+++|+|+++++.+||+++|+.||+
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~~~~~~yF~~lG~~~p~ 311 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPADKAKQYFEKMGFKCPD 311 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999874 999999999998778899999999987 5789999999999999999999999
Q ss_pred CCCchhHHHHhhhccccC---CCCC--CCcccccchhhhccCCCCCCccccccccccCCCCCCCCCCCCCCcccchhhhh
Q 001270 745 RVNPPDHLIDILEGIVKP---SANS--NVTYEDLPVRWMLHNGYPVPPDMQKNASRFVMPPEGVNPANGINLATTEVEEK 819 (1111)
Q Consensus 745 ~~npad~~ldi~~~~~~~---~~~~--~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1111)
+.||+||+++++...... ..+. ..+.+++...|..+..+ .+..+..+... +.
T Consensus 312 ~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~---~~~~~~~~~~~--------------------~~ 368 (1394)
T TIGR00956 312 RQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEY---AQLMKEIDEYL--------------------DR 368 (1394)
T ss_pred CCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHH---HHHHHHHHHHh--------------------hh
Confidence 999999999987532110 0000 00111222222211000 00000000000 00
Q ss_pred hchhhhHHhhhhhhhhccccccccccccccCcCcCCCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhccc
Q 001270 820 SFAGELWQDMKNNVEFHKDHIRLNFFKSKDLSKRKTPGVFQQYRFFLGRVAKQRLREAKPQAVDFLILLLAGACLGSLSK 899 (1111)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~Q~~~Ll~R~~~q~~Rd~~~~~~~~~~~ll~Gl~lG~l~~ 899 (1111)
.......+..... .. .+. .+..........++++|+++|++|.+++.+||+.++.+++++.+++|+++|++|.
T Consensus 369 ~~~~~~~~~~~~~-~~--~~~----~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~ 441 (1394)
T TIGR00956 369 CSESDTKEAYRES-HV--AKQ----SKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFY 441 (1394)
T ss_pred ccchhhHHHHHHH-HH--hhh----cccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0000000000000 00 000 0001112245578999999999999999999999999999999999999999874
Q ss_pred C-Cc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001270 900 V-GD---ENFGAAGYSHTIIAVSLLCKIAALRTFSLEKLQYWRERASGMSS-LAYFLAKDTIDHFNTVIKPVVYLSMFYF 974 (1111)
Q Consensus 900 ~-~~---~~~g~~g~~f~via~~ll~~i~al~~F~~ER~vf~REr~sG~y~-~aYflAk~l~dlp~~ii~piif~si~Yf 974 (1111)
. ++ +.+++.|.+|+.+.+..+..+..+..|..||.+|+||+.+|+|+ .+|++|+.++|+|..++.+++|.+|+||
T Consensus 442 ~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yf 521 (1394)
T TIGR00956 442 NLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYF 521 (1394)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEE
Confidence 3 32 33556777776655544445666777888999999999999987 5999999999999999999999999999
Q ss_pred ccCCcchHHHHHHHHHHHHH----HHHHHHHHHHHhcCc-hhHHHHHHHHHH----HhhhhccCCcccchhhccccccHH
Q 001270 975 FTNPRSSFADNYAVLLCLVY----CVTGIAYALAIFFEP-GSAQLWSVLLPV----VLTLIATRKTDSEFMKNIANLCYP 1045 (1111)
Q Consensus 975 m~glr~~~~~~f~~~lll~~----~~~~l~~~l~i~~~~-~~a~l~~~l~p~----~~~l~~~~~~iP~~l~Wl~yiS~~ 1045 (1111)
|+|++.++..+|+ ++++++ +..+++.+++.++.. ..|+..+.++.+ +.+++++.++||.||+|++|+||+
T Consensus 522 m~gl~~~~~~Ff~-f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~ 600 (1394)
T TIGR00956 522 MVNFRRTAGRFFF-YLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPL 600 (1394)
T ss_pred cCCCcccHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHH
Confidence 9999988654333 333333 333455555544332 233333332222 223467889999999999999999
Q ss_pred HHHHHHHHHhccccccCcc---------------ccccc---------------chhh-hcccccCchhHHHHHHHHHHH
Q 001270 1046 KWALQAFVVANAERYYGVW---------------LITRC---------------GLLM-KSGYDLQEWGLCIGILIVYGV 1094 (1111)
Q Consensus 1046 rYa~eal~ine~~~y~g~~---------------~~~~c---------------~~L~-~~G~d~~~~~~~i~iLi~~~v 1094 (1111)
+|+|||+++||++.-.-.+ ....| ..|. .+||+..+.|.++++|+++.+
T Consensus 601 ~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v 680 (1394)
T TIGR00956 601 AYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTV 680 (1394)
T ss_pred HHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHH
Confidence 9999999999974210000 00123 1233 357777888999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 001270 1095 VSRIIAFFGMLIFQ 1108 (1111)
Q Consensus 1095 ~frvlayl~L~~~~ 1108 (1111)
+|+++++++|.+.+
T Consensus 681 ~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 681 FFFFVYILLTEFNK 694 (1394)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998765
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.7e-74 Score=750.17 Aligned_cols=553 Identities=21% Similarity=0.302 Sum_probs=407.7
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC-CceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC-KATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVE 594 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 594 (1111)
+.||+|||+.|++||+++|+||||||||||||+|+|++.+. ..+|+|.+||++......++.++||+|++.+++++||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 56999999999999999999999999999999999987531 23899999998864333467899999999999999999
Q ss_pred HHHHHHHHhhccc-------cchHHHH------------------------HHHHHHHHHHcCCCccccccccCccCCCC
Q 001270 595 ENLWFHARCRLSA-------HLAKADK------------------------VLVIERVIDTLGLQTVRDSLVGTVEKRGI 643 (1111)
Q Consensus 595 EnL~f~a~~~~~~-------~~~~~~~------------------------~~~v~~vL~~LGL~~~~d~~vg~~~~rgL 643 (1111)
|||.|++.++... .....++ ...++++++.+||++++|+.+|+...++|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 9999988754211 1111111 12357899999999999999998888999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEE
Q 001270 644 SGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLT 722 (1111)
Q Consensus 644 SGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~i 722 (1111)
||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|||+++||++.+++++||++++|.+ |++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~i 416 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQI 416 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceE
Confidence 99999999999999999999999999999999999999999999986 5899999999998778899999999986 588
Q ss_pred EEecCHhhHHHHHHhCCCCCCCCCCchhHHHHhhhccccCCCCCCCcccccchhhhccCCCCCCccccccccccCCCCCC
Q 001270 723 VYHGSVKKVEEYFAGLGINVPERVNPPDHLIDILEGIVKPSANSNVTYEDLPVRWMLHNGYPVPPDMQKNASRFVMPPEG 802 (1111)
Q Consensus 723 v~~G~~~~l~~~f~~~g~~~p~~~npad~~ldi~~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1111)
+|+|+.+++.+||+++|+.||++.||+||+++++...... ..|... ..|..... .
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~------------~~~~~~---~~p~~~~~-~--------- 471 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQE------------QYWADR---NKPYRYIS-V--------- 471 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhh------------hhhhcc---CCccccCC-H---------
Confidence 9999999999999999999999999999999987532110 012110 00000000 0
Q ss_pred CCCCCCCCcccchhhhhhchhhhHHhhhhhhhhccccccccccccccCcCcCCCchhHHHHHHHHHHHHHhhcchhhHHH
Q 001270 803 VNPANGINLATTEVEEKSFAGELWQDMKNNVEFHKDHIRLNFFKSKDLSKRKTPGVFQQYRFFLGRVAKQRLREAKPQAV 882 (1111)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~Q~~~Ll~R~~~q~~Rd~~~~~~ 882 (1111)
.+..+....++..+++...++...++... ............+++.|++.+++|.++.++||+.++++
T Consensus 472 -----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~ 538 (1470)
T PLN03140 472 -----------SEFAERFKSFHVGMQLENELSVPFDKSQS--HKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVF 538 (1470)
T ss_pred -----------HHHHHHHHhcHHHHHHHHHHhhhhhhhhc--ccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 00000000111111111111100000000 00001123356778999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCC----ccc---cchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCh-HHHHHHHH
Q 001270 883 DFLILLLAGACLGSLSKVG----DEN---FGAAGYSHTIIAVSLLCKIAALRTFSLEKLQYWRERASGMSS-LAYFLAKD 954 (1111)
Q Consensus 883 ~~~~~ll~Gl~lG~l~~~~----~~~---~g~~g~~f~via~~ll~~i~al~~F~~ER~vf~REr~sG~y~-~aYflAk~ 954 (1111)
++++.+++|+++|++|... ++. +...|.+|+.+.+..+..++.+..|+.||+||+|||..++|+ .+|++|+.
T Consensus 539 r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~ 618 (1470)
T PLN03140 539 KTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTF 618 (1470)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHH
Confidence 9999999999999987422 111 123444444433334455677899999999999999999987 59999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHHHHHHHH----HHHHHHHHhcCc-hhHHHHHHHHHHHh----hh
Q 001270 955 TIDHFNTVIKPVVYLSMFYFFTNPRSSFADNYAVLLCLVYCVT----GIAYALAIFFEP-GSAQLWSVLLPVVL----TL 1025 (1111)
Q Consensus 955 l~dlp~~ii~piif~si~Yfm~glr~~~~~~f~~~lll~~~~~----~l~~~l~i~~~~-~~a~l~~~l~p~~~----~l 1025 (1111)
++|+|..++.+++|.+|+|||+|+++++.. |++++++++++. +++..++.+... ..|+..+.++.+++ ++
T Consensus 619 l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~-Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf 697 (1470)
T PLN03140 619 LLGIPISIIESVVWVVITYYSIGFAPEASR-FFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGF 697 (1470)
T ss_pred HHHHHHHHHHHHHHHhHHhhhcCCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999998754 433444444433 344444433322 23443333222222 24
Q ss_pred hccCCcccchhhccccccHHHHHHHHHHHhcccc--ccCcc-----cccccchhhhcccccCch--hHHHHHHHHHHHHH
Q 001270 1026 IATRKTDSEFMKNIANLCYPKWALQAFVVANAER--YYGVW-----LITRCGLLMKSGYDLQEW--GLCIGILIVYGVVS 1096 (1111)
Q Consensus 1026 ~~~~~~iP~~l~Wl~yiS~~rYa~eal~ine~~~--y~g~~-----~~~~c~~L~~~G~d~~~~--~~~i~iLi~~~v~f 1096 (1111)
+++.++||+||+|++|+||++||+||+++||+.. |.+.. .......|..+|++..+. |.++++|+++.++|
T Consensus 698 ~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f 777 (1470)
T PLN03140 698 ILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILF 777 (1470)
T ss_pred eechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHH
Confidence 6788999999999999999999999999999631 22110 011123577788876543 56899999999999
Q ss_pred HHHHHHHHHhhh
Q 001270 1097 RIIAFFGMLIFQ 1108 (1111)
Q Consensus 1097 rvlayl~L~~~~ 1108 (1111)
++++|++|.+.+
T Consensus 778 ~~l~~l~L~~~~ 789 (1470)
T PLN03140 778 NVLFTLALTYLN 789 (1470)
T ss_pred HHHHHHHHHhcC
Confidence 999999998865
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-74 Score=712.44 Aligned_cols=556 Identities=28% Similarity=0.432 Sum_probs=427.8
Q ss_pred EEEEeEEEEE--cCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 502 VSFKDLTLTL--KGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y--~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
..++|+.++. +++.+++|+||++-++||.++||||+|||||||||++|+|+...+..+|+|+|||.+.+...++|.+|
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~G 867 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSG 867 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccc
Confidence 4566766665 35668899999999999999999999999999999999999777788999999999987678999999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
||.|+|.+.+.+||+|.|.|++.+|++..++.+++.+.|+++++.|+|++++|..||..+ .|||.+||||++||.+|+.
T Consensus 868 YvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA 946 (1391)
T KOG0065|consen 868 YVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVA 946 (1391)
T ss_pred eeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEec
Confidence 999999999999999999999999999999999998999999999999999999999877 9999999999999999999
Q ss_pred CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh----HHHH
Q 001270 660 EP-SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK----VEEY 734 (1111)
Q Consensus 660 ~P-~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~----l~~~ 734 (1111)
+| .||+|||||||||+.++..|++.+|++++.|+||++++|||+..+++.||++++|.+||++||.|+..+ +.+|
T Consensus 947 ~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~Y 1026 (1391)
T KOG0065|consen 947 NPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEY 1026 (1391)
T ss_pred CCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHH
Confidence 99 999999999999999999999999999999999999999999999999999999999999999999864 7889
Q ss_pred HHhCC-CCCCCCCCchhHHHHhhhccccCCCCCCCcccccchhhhccCCCCCCccccccccccCCCCCCCCCCCCCCccc
Q 001270 735 FAGLG-INVPERVNPPDHLIDILEGIVKPSANSNVTYEDLPVRWMLHNGYPVPPDMQKNASRFVMPPEGVNPANGINLAT 813 (1111)
Q Consensus 735 f~~~g-~~~p~~~npad~~ldi~~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1111)
|+++| .+||...|||||++|++..... ...+ .++...|...+.+
T Consensus 1027 Fes~~~~~~~~~~NPA~~mLevi~~~~~----~~~~-~D~a~~w~~S~e~------------------------------ 1071 (1391)
T KOG0065|consen 1027 FESIGGVKCISDENPAEWMLEVIGAGAE----ASLS-VDFAEIWKNSEEY------------------------------ 1071 (1391)
T ss_pred HHhcCCccCCCCCChHHHHHhhcccccc----cccC-ccHHHHHhccHHH------------------------------
Confidence 99987 7899888999999998853211 1111 1344445322111
Q ss_pred chhhhhhchhhhHHhhhhhhhhccccccccccccccCcCcCCCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 001270 814 TEVEEKSFAGELWQDMKNNVEFHKDHIRLNFFKSKDLSKRKTPGVFQQYRFFLGRVAKQRLREAKPQAVDFLILLLAGAC 893 (1111)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~Q~~~Ll~R~~~q~~Rd~~~~~~~~~~~ll~Gl~ 893 (1111)
+..++.++.-.+.... .........+..+++|.|++.+++|.+.++||+|.+++++++..++.|++
T Consensus 1072 -------------k~~~e~v~~l~~~~~~-~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~ 1137 (1391)
T KOG0065|consen 1072 -------------KRNKELVKELSQPPPG-FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLF 1137 (1391)
T ss_pred -------------HHHHHHHHHHhcCCcc-CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 1111111100000000 00111123456789999999999999999999999999999999999999
Q ss_pred Hhhcc-cCCccc---cchhhHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHh
Q 001270 894 LGSLS-KVGDEN---FGAAGYSHTIIAVSLLCKIA-ALRTFSLEKLQYWRERASGMSS-LAYFLAKDTIDHFNTVIKPVV 967 (1111)
Q Consensus 894 lG~l~-~~~~~~---~g~~g~~f~via~~ll~~i~-al~~F~~ER~vf~REr~sG~y~-~aYflAk~l~dlp~~ii~pii 967 (1111)
+|+.| +.+... ++.+|.+|..+.+....+.+ ..+.+..||.+++||+++|||+ .+|++|.+++|+|..++..++
T Consensus 1138 iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl 1217 (1391)
T KOG0065|consen 1138 IGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTL 1217 (1391)
T ss_pred heeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99875 444433 34556666555444434444 3355677899999999999998 599999999999999999999
Q ss_pred hhhhhhhccCCcchHHHHHH-HH--HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-------HhhhhccCCcccchhh
Q 001270 968 YLSMFYFFTNPRSSFADNYA-VL--LCLVYCVTGIAYALAIFFEPGSAQLWSVLLPV-------VLTLIATRKTDSEFMK 1037 (1111)
Q Consensus 968 f~si~Yfm~glr~~~~~~f~-~~--lll~~~~~~l~~~l~i~~~~~~a~l~~~l~p~-------~~~l~~~~~~iP~~l~ 1037 (1111)
|..++||++|+..++..+++ ++ ++...+.+.+|.++..+ .| .++.++++..+ |.+++++.+.||.||+
T Consensus 1218 ~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~-tP-n~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~ 1295 (1391)
T KOG0065|consen 1218 FFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSL-TP-NLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWI 1295 (1391)
T ss_pred hheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC-ChhHHHHHHHHHHHHHHHhcccccccccccceee
Confidence 99999999999877533221 11 11112223444444322 22 22333322222 2335678899999999
Q ss_pred ccccccHHHHHHHHHHHhccccc-------cCcc----cccccchhhhc------ccccCchhHHHHHHHHHHHHHHHHH
Q 001270 1038 NIANLCYPKWALQAFVVANAERY-------YGVW----LITRCGLLMKS------GYDLQEWGLCIGILIVYGVVSRIIA 1100 (1111)
Q Consensus 1038 Wl~yiS~~rYa~eal~ine~~~y-------~g~~----~~~~c~~L~~~------G~d~~~~~~~i~iLi~~~v~frvla 1100 (1111)
|++|+||+.|-+++++...+.+. +.+. ....|+...+. ||..+.......+.+.+.+++.+++
T Consensus 1296 wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~ 1375 (1391)
T KOG0065|consen 1296 WMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLA 1375 (1391)
T ss_pred eeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHH
Confidence 99999999999999998754211 1110 01246655443 3544444444556677888999999
Q ss_pred HHHHHhhhc
Q 001270 1101 FFGMLIFQK 1109 (1111)
Q Consensus 1101 yl~L~~~~k 1109 (1111)
.+.+++.++
T Consensus 1376 ~f~~~y~~~ 1384 (1391)
T KOG0065|consen 1376 AFNIKYLNF 1384 (1391)
T ss_pred HHHHHHHHH
Confidence 999988665
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.2e-62 Score=601.06 Aligned_cols=554 Identities=25% Similarity=0.383 Sum_probs=415.7
Q ss_pred cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC-CceeEEEECCeeCCcccccccEEEEccCCCCCCCCCH
Q 001270 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC-KATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTV 593 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV 593 (1111)
...+|+|+|+-++|||++.++||.||||||||++|+|..... ...|+|.+||.+.+...-++.++|..|+|.+++.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999975422 3468999999986543337889999999999999999
Q ss_pred HHHHHHHHHhhcccc----chHHHHH-HHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001270 594 EENLWFHARCRLSAH----LAKADKV-LVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDE 668 (1111)
Q Consensus 594 ~EnL~f~a~~~~~~~----~~~~~~~-~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDE 668 (1111)
+|+|.|+++++.+.. ..+.++. +..+.+++.+||++++|+++|+...||+|||||+||+||-+++.+++++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999887632 2333332 25778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHHHhCCCCCCCCCC
Q 001270 669 PTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYFAGLGINVPERVN 747 (1111)
Q Consensus 669 PTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f~~~g~~~p~~~n 747 (1111)
+|.|||+.++.++++.|+++++. +.|++++.||++.+++++||+|++|.+| .++|+||.+++++||+++|+.||++.+
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG-~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEG-YQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeecc-ceEEeccHHHHHHHHHhcCccCCCccC
Confidence 99999999999999999999864 8999999999999999999999999975 789999999999999999999999999
Q ss_pred chhHHHHhhhccccCCCCCCCcccccchhhhccCCCCCCccccccccccCCCCCCCCCCCCCCcccchhhhhhchhhhHH
Q 001270 748 PPDHLIDILEGIVKPSANSNVTYEDLPVRWMLHNGYPVPPDMQKNASRFVMPPEGVNPANGINLATTEVEEKSFAGELWQ 827 (1111)
Q Consensus 748 pad~~ldi~~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1111)
++||+.+++...... ..|... +.+.+.. ...+..+.+...+.+.
T Consensus 366 ~ADfLt~vts~k~~~------------~~~~~~-~~~~~~~-----------------------~~~ef~~~~~~s~~~~ 409 (1391)
T KOG0065|consen 366 TADFLTEVTSKKDQE------------QYWNKR-SKPYPYT-----------------------SVSEFAEYFLNSEDYA 409 (1391)
T ss_pred HHHHHHHhhcCcccc------------cccccc-CCCcccC-----------------------CHHHHHHHHhcchhhH
Confidence 999999998632110 011110 0000000 0011112222222222
Q ss_pred hhhhhhhhccccccccccccccCcCcCCCchhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhcccCCc--cc-
Q 001270 828 DMKNNVEFHKDHIRLNFFKSKDLSKRKTPGVFQQYRFFLGRVAKQRLREAKPQAVDFLILLLAGACLGSLSKVGD--EN- 904 (1111)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~Q~~~Ll~R~~~q~~Rd~~~~~~~~~~~ll~Gl~lG~l~~~~~--~~- 904 (1111)
.+...+....++.+. .+....+.....++|.|+++++.|.+..++||+.++...+++.+++|+++|++|...+ .+
T Consensus 410 ~l~~~l~~~~~~~k~--~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~ 487 (1391)
T KOG0065|consen 410 KLKKELSKPYDKSKK--HKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTS 487 (1391)
T ss_pred HHHHHhcchhhhhhc--cchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccc
Confidence 222222111111110 1112233556678999999999999999999999999999999999999999874332 11
Q ss_pred --cchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcch
Q 001270 905 --FGAAGYSHTIIAVSLLCKIAALRTFSLEKLQYWRERASGMSS-LAYFLAKDTIDHFNTVIKPVVYLSMFYFFTNPRSS 981 (1111)
Q Consensus 905 --~g~~g~~f~via~~ll~~i~al~~F~~ER~vf~REr~sG~y~-~aYflAk~l~dlp~~ii~piif~si~Yfm~glr~~ 981 (1111)
+...|.+|+.+.+..+..++-+..-.+.|+||+++|...+|+ .||.++..+.++|+.++..++|.+|+||++|+.++
T Consensus 488 ~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~ 567 (1391)
T KOG0065|consen 488 GGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRN 567 (1391)
T ss_pred cchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcc
Confidence 224455555544444455556666678899999999999986 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---Cc--hhHHHHHHHHHHHhh----hhccCCcccchhhccccccHHHHHHHHH
Q 001270 982 FADNYAVLLCLVYCVTGIAYALAIFF---EP--GSAQLWSVLLPVVLT----LIATRKTDSEFMKNIANLCYPKWALQAF 1052 (1111)
Q Consensus 982 ~~~~f~~~lll~~~~~~l~~~l~i~~---~~--~~a~l~~~l~p~~~~----l~~~~~~iP~~l~Wl~yiS~~rYa~eal 1052 (1111)
+..||..+++++ ++..++.+++.++ .+ ..|++.+.+..+++. ++++..+||+||+|++|++|..||+|++
T Consensus 568 A~rFF~~fL~lf-~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl 646 (1391)
T KOG0065|consen 568 AGRFFIQFLFLF-LCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESL 646 (1391)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHH
Confidence 876555444443 3333333333222 11 345555544433333 3568899999999999999999999999
Q ss_pred HHhcccc--cc---------Cccc-cccc-------c--hh-------hhcccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 001270 1053 VVANAER--YY---------GVWL-ITRC-------G--LL-------MKSGYDLQEWGLCIGILIVYGVVSRIIAFFGM 1104 (1111)
Q Consensus 1053 ~ine~~~--y~---------g~~~-~~~c-------~--~L-------~~~G~d~~~~~~~i~iLi~~~v~frvlayl~L 1104 (1111)
++||+.. ++ .... ...| | .+ ..++|+.+++|.+++||+++.++|.++.-+++
T Consensus 647 ~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~ 726 (1391)
T KOG0065|consen 647 MSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIAL 726 (1391)
T ss_pred HHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHH
Confidence 9999642 11 1000 1123 1 11 23445566778899999999999998888888
Q ss_pred Hhhh
Q 001270 1105 LIFQ 1108 (1111)
Q Consensus 1105 ~~~~ 1108 (1111)
-+.+
T Consensus 727 ~yl~ 730 (1391)
T KOG0065|consen 727 EYLK 730 (1391)
T ss_pred HhcC
Confidence 6654
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-51 Score=430.77 Aligned_cols=218 Identities=27% Similarity=0.476 Sum_probs=198.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC----Ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE----PIHSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~----~~~~~r~ 576 (1111)
.|+++||+++| +..++|+|||++|++||+++|+||||||||||||+|.|+.. +++|+|.++|+++ +...+|+
T Consensus 2 mi~i~~l~K~f--g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~ 77 (240)
T COG1126 2 MIEIKNLSKSF--GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRR 77 (240)
T ss_pred eEEEEeeeEEe--CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHH
Confidence 47899999999 56789999999999999999999999999999999999765 6899999999765 2346789
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
++|+|||+.+|||++||.||+.++...- ..+++++.++++.++|+.+||.+.+|.++.. |||||||||+||||
T Consensus 78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~q-----LSGGQqQRVAIARA 150 (240)
T COG1126 78 KVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPAQ-----LSGGQQQRVAIARA 150 (240)
T ss_pred hcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCccc-----cCcHHHHHHHHHHH
Confidence 9999999999999999999999976432 3466777778899999999999999998865 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|+++|+++|+|||||+|||+...++++.+++|+++|.|+|+|||++.++ .+.+||+++|++ |+++..|+++++
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA-r~VadrviFmd~-G~iie~g~p~~~ 223 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA-REVADRVIFMDQ-GKIIEEGPPEEF 223 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH-HHhhheEEEeeC-CEEEEecCHHHH
Confidence 9999999999999999999999999999999999999999999999985 589999999976 688999988765
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-47 Score=405.86 Aligned_cols=228 Identities=27% Similarity=0.420 Sum_probs=203.6
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccccE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 578 (1111)
|+++||+++| +++.+++|+||+|++||+++++|||||||||+||+|.++.. |++|+|++||+++. ...+|+.|
T Consensus 2 I~~~nvsk~y--~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 2 IEFENVSKRY--GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred ceeeeeehhc--CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCCHHHHHHhh
Confidence 6899999999 57789999999999999999999999999999999999875 68999999999863 34689999
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc--cccccccCccCCCCCHHHHHHHHHHHH
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT--VRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~--~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
|||-|...|||++||.|||.+-..+. .+.+++..++++++++.+||+. +.++++.+ |||||+|||.+|||
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~e-----LSGGQQQRVGv~RA 149 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYPHE-----LSGGQQQRVGVARA 149 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchh-----cCcchhhHHHHHHH
Confidence 99999999999999999999876653 4677788889999999999974 77877654 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYF 735 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f 735 (1111)
|+.+|+|||||||+++|||.++..+.+.++++.++ |+|||+||||++++ ++++||+++|.+ |+++..++++++.
T Consensus 150 LAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA-~kLadri~vm~~-G~i~Q~~~P~~il--- 224 (309)
T COG1125 150 LAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEA-LKLADRIAVMDA-GEIVQYDTPDEIL--- 224 (309)
T ss_pred HhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHH-HhhhceEEEecC-CeEEEeCCHHHHH---
Confidence 99999999999999999999999999999999765 99999999999875 699999999975 6899999999875
Q ss_pred HhCCCCCCCCCCchhHHHHhh
Q 001270 736 AGLGINVPERVNPPDHLIDIL 756 (1111)
Q Consensus 736 ~~~g~~~p~~~npad~~ldi~ 756 (1111)
.||++-|++-+
T Consensus 225 ----------~~Pan~FV~~f 235 (309)
T COG1125 225 ----------ANPANDFVEDF 235 (309)
T ss_pred ----------hCccHHHHHHH
Confidence 36776555544
No 12
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-47 Score=414.79 Aligned_cols=218 Identities=28% Similarity=0.429 Sum_probs=198.1
Q ss_pred EEEEeEEEEEcCC---cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC------cc
Q 001270 502 VSFKDLTLTLKGK---NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP------IH 572 (1111)
Q Consensus 502 L~~~nLs~~y~~~---~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~------~~ 572 (1111)
|++++|++.|..+ ...+|+|||++|++||++||+|.||||||||+|+|.++.. |++|+|.++|+++. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChHHHH
Confidence 6899999999752 2469999999999999999999999999999999999765 68999999998753 23
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
..|++|||+||++.|+...||+||++|.+++. ++++++..++|.++++.+||.+..++++.+ |||||||||+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP~q-----LSGGQKQRVa 151 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYPAQ-----LSGGQKQRVA 151 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCchh-----cCcchhhHHH
Confidence 57889999999999999999999999998765 367888889999999999999999988865 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|||||+.+|+|||.|||||+|||.+.+.|+++|+++.++ |.||++|||+++. +.+.|||+.+|++ |++++.|++.++
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~-G~lvE~G~v~~v 229 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQ-GRLVEEGTVSEV 229 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeC-CEEEEeccHHHh
Confidence 999999999999999999999999999999999999765 9999999999975 6789999999986 589999998776
No 13
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-46 Score=419.70 Aligned_cols=219 Identities=29% Similarity=0.419 Sum_probs=199.0
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccE
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKII 578 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~I 578 (1111)
..|+++||++.|+. ..+|+|||++|++||+++|+||||||||||||+|+|+.. +++|+|.|+|++++. ...+|.|
T Consensus 2 ~~i~l~~v~K~yg~--~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~i 77 (338)
T COG3839 2 AELELKNVRKSFGS--FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGI 77 (338)
T ss_pred cEEEEeeeEEEcCC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCE
Confidence 46899999999943 239999999999999999999999999999999999775 689999999998753 4567899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
|||||+..|||+|||+|||.|+++.+ ..++++..++|+++.+.|+|++..|+++.+ |||||||||||||||+
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~~-----LSGGQrQRVAlaRAlV 149 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQ-----LSGGQRQRVALARALV 149 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCccc-----CChhhHHHHHHHHHHh
Confidence 99999999999999999999998865 356778888999999999999999998765 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
++|+++|||||+|+||...+..+...|+++.++ |.|+|+||||..++ ..++|++++|.+ |++...|++.++.
T Consensus 150 r~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EA-mtladri~Vm~~-G~i~Q~g~p~ely 222 (338)
T COG3839 150 RKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEA-MTLADRIVVMND-GRIQQVGTPLELY 222 (338)
T ss_pred cCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHH-HhhCCEEEEEeC-CeeeecCChHHHh
Confidence 999999999999999999999999999998765 89999999998764 689999999985 6899999999874
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.7e-46 Score=394.80 Aligned_cols=220 Identities=29% Similarity=0.454 Sum_probs=196.7
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------cc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------HS 573 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~ 573 (1111)
..|++++|+++| +++.|++||||+|++||+++||||||+|||||||+|.|++. |++|+|.++|+++.. ..
T Consensus 7 ~~I~vr~v~~~f--G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 7 PLIEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred ceEEEeeeeeec--CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccCHHHHHH
Confidence 458999999999 67899999999999999999999999999999999999876 689999999988531 24
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV-RDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
+++++|++||+..||..|||+||+.|..+.. ..+++...++.+..-|+.+||... .+.++.+ |||||+||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsE-----LSGGM~KRva 155 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYPSE-----LSGGMRKRVA 155 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCchh-----hcchHHHHHH
Confidence 6789999999999999999999999976543 346677777778888899999876 6766654 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|||||+.+|+|||+||||+||||.++..+-++|+++.+. |.|+|+||||++. ++..+|++++|.+ |+++++|+++++
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s-~~~i~Drv~~L~~-gkv~~~Gt~~el 233 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLAD-GKVIAEGTPEEL 233 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH-HHhhhceEEEEeC-CEEEEeCCHHHH
Confidence 999999999999999999999999999999999999876 9999999999985 6799999999987 589999999987
Q ss_pred H
Q 001270 732 E 732 (1111)
Q Consensus 732 ~ 732 (1111)
.
T Consensus 234 ~ 234 (263)
T COG1127 234 L 234 (263)
T ss_pred H
Confidence 5
No 15
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-46 Score=398.61 Aligned_cols=204 Identities=28% Similarity=0.410 Sum_probs=184.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.++++++++.|. ...+|+|||++|.+||+++|+||||||||||||+|+|+.. +++|+|.++|+++ ..-...+||
T Consensus 3 ~l~i~~v~~~f~--~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v--~~p~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFG--GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV--TGPGPDIGY 76 (248)
T ss_pred eEEEEeeEEEeC--ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc--CCCCCCEEE
Confidence 478899999994 4789999999999999999999999999999999999875 6899999999876 334678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
|||++.++|.+||+||+.|+..... .++.+..++++++|+.+||.+..++++.+ |||||||||+|||||+.+
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P~q-----LSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYPHQ-----LSGGMRQRVAIARALATR 148 (248)
T ss_pred EeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCccc-----cChHHHHHHHHHHHHhcC
Confidence 9999999999999999999987643 45566667899999999999999988765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
|+||+||||+++||+.++..+.+.|.++.+ +++||++||||.++++ .++|||++|.++
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv-~LsdRivvl~~~ 207 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAV-YLADRVVVLSNR 207 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH-hhhCEEEEecCC
Confidence 999999999999999999999999999864 5899999999998765 799999999874
No 16
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-46 Score=422.47 Aligned_cols=218 Identities=29% Similarity=0.485 Sum_probs=197.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC-cccccccEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP-IHSYKKIIG 579 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~-~~~~r~~Ig 579 (1111)
.|+++||+++| ++..+|+|||++|++||+++|+|||||||||||++|+|+.. |++|+|.++|+++. ....+|.||
T Consensus 5 ~l~i~~v~k~y--g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 5 ALEIRNVSKSF--GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred eEEEEeeeeec--CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhhcccc
Confidence 58899999999 46789999999999999999999999999999999999765 68999999999974 345689999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
+|||+..|||+|||+||+.|+++.+ ....+++..++++++++.++|.+..++++.+ |||||||||+|||||+.
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~q-----LSGGQqQRVALARAL~~ 153 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKPHQ-----LSGGQQQRVALARALVP 153 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhChhh-----hChHHHHHHHHHHHhhc
Confidence 9999999999999999999998743 2344566778899999999999999988765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+|++||||||.|+||..-+.++...|+++.++ |.|.|+||||.+++ ..++|||++|++ |++...|+++++
T Consensus 154 ~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEA-l~msDrI~Vm~~-G~I~Q~gtP~ei 224 (352)
T COG3842 154 EPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEA-LAMSDRIAVMND-GRIEQVGTPEEI 224 (352)
T ss_pred CcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH-hhhccceEEccC-CceeecCCHHHH
Confidence 99999999999999999999999999998754 99999999999875 589999999986 588999999887
No 17
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-45 Score=412.53 Aligned_cols=224 Identities=35% Similarity=0.548 Sum_probs=198.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKII 578 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~I 578 (1111)
.++++||+++|+. .+.+|+||||+|++||++||+||||||||||||+|+|+.. |++|+|.++|.+... ...+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCHHHHHhhe
Confidence 4788999999931 5789999999999999999999999999999999999876 589999999988643 4678899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
|||||++.+++.+||+|||.|.+.++.... ....++++++++.+||.+..++++++ ||+||||||+||+||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~~~-----lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKVRT-----LSGGMKQRLSIALALL 152 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcchhh-----cCHHHHHHHHHHHHHh
Confidence 999999999999999999999998775332 34456789999999999866666654 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHHHh
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALEG-VNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYFAG 737 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G-~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f~~ 737 (1111)
++|+||||||||+||||.++..+++.|++++++| +||+++||+++. +..+||++++|.+ |++++.|+++++...+..
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e-~~~~~d~v~il~~-G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEE-AEELCDRVIILND-GKIIAEGTPEELKEKFGG 230 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHH-HHHhCCEEEEEeC-CEEEEeCCHHHHHHhhcc
Confidence 9999999999999999999999999999999887 899999999985 5678999999986 588999999988766643
No 18
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-45 Score=394.64 Aligned_cols=207 Identities=31% Similarity=0.454 Sum_probs=178.6
Q ss_pred EEEEeEEEEEcCCc--ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------cc
Q 001270 502 VSFKDLTLTLKGKN--KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------HS 573 (1111)
Q Consensus 502 L~~~nLs~~y~~~~--k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~ 573 (1111)
++++||++.|..+. ..+|++|||+|++||+++|+|||||||||||++|.|+.. |++|+|.++|+++.. ..
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCcCCHHHHHH
Confidence 46899999996433 479999999999999999999999999999999999775 589999999987532 12
Q ss_pred -ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcccc-ccccCccCCCCCHHHHHHH
Q 001270 574 -YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRD-SLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 574 -~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d-~~vg~~~~rgLSGGQrQRV 651 (1111)
.++.||||||+..|.|++||+||+.+.+.... .........++++++.+||.+..+ +++.+ |||||||||
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~p~e-----LSGGqqQRV 151 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKKPSE-----LSGGQQQRV 151 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCCchh-----cCHHHHHHH
Confidence 34679999999999999999999998765432 222244566889999999997666 66655 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCc
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGG 720 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG 720 (1111)
||||||+.+|+|||.||||.+||+.+...|+++|++++++ |+|||+||||+. +..++||++.|.+|+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~ 219 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGK 219 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCe
Confidence 9999999999999999999999999999999999999865 999999999986 458999999999864
No 19
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.4e-46 Score=404.60 Aligned_cols=220 Identities=32% Similarity=0.485 Sum_probs=193.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||++.| +++.+|+||||+|++||+++|+||||||||||||+|+|++. |.+|+|+++|+++. .+++.+.
T Consensus 2 ~L~~~~ls~~y--~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~kelAk~ 77 (258)
T COG1120 2 MLEVENLSFGY--GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKELAKK 77 (258)
T ss_pred eeEEEEEEEEE--CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCHHHHhhh
Confidence 47899999999 56789999999999999999999999999999999999876 58899999999863 3467789
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSA-HLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~-~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
+|||||.+...+.+||+|-+.++....... .....+..+.+++.|+.+|+.+.+++.+.+ |||||||||.||||
T Consensus 78 ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~-----LSGGerQrv~iArA 152 (258)
T COG1120 78 LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARA 152 (258)
T ss_pred EEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccc-----cChhHHHHHHHHHH
Confidence 999999988888999999999986532221 112233344789999999999999999877 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|+++|+|||||||||.||...+.+++++++++++ +|+|||+++||++.+ .+++|++++|.+ |+++++|+++++
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A-~ryad~~i~lk~-G~i~a~G~p~ev 226 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA-ARYADHLILLKD-GKIVAQGTPEEV 226 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HHhCCEEEEEEC-CeEEeecCcchh
Confidence 9999999999999999999999999999999985 599999999999976 599999999986 588999999876
No 20
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-45 Score=398.64 Aligned_cols=220 Identities=29% Similarity=0.490 Sum_probs=189.0
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
..|+++||+++|.++ ++|+||||+|++|++++|+||||||||||+|+|+|++. |.+|+|.++|++.....-+.+||
T Consensus 3 ~~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~~~~~Ig 78 (254)
T COG1121 3 PMIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRRKRLRIG 78 (254)
T ss_pred cEEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccccCCeEE
Confidence 358999999999532 69999999999999999999999999999999999776 68999999998764433357899
Q ss_pred EEccCCCC--CCCCCHHHHHHHHHHhhcc--ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 580 FVPQDDIV--HGNLTVEENLWFHARCRLS--AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 580 yV~Qd~~l--~~~LTV~EnL~f~a~~~~~--~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
||||...+ -..+||+|-+.++...+.. ....+.+ .+.++++|+.+|+.+.+|+.+++ |||||+|||.|||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lAR 152 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKD-KEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLAR 152 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHH-HHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHH
Confidence 99996432 2247999999987433221 1222333 56799999999999999999997 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||+.+|++|||||||+|+|+.++..+.++|++++++|+||++|+||++. +.+++|+++.|++ .+++.|+++++.
T Consensus 153 AL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~D~vi~Ln~--~~~~~G~~~~~~ 226 (254)
T COG1121 153 ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLNR--HLIASGPPEEVL 226 (254)
T ss_pred HhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhCCEEEEEcC--eeEeccChhhcc
Confidence 9999999999999999999999999999999999889999999999986 5699999999964 679999998864
No 21
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-45 Score=388.98 Aligned_cols=225 Identities=27% Similarity=0.418 Sum_probs=195.7
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC------ccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP------IHS 573 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~------~~~ 573 (1111)
..|+++||+++|+ +++.+|+|||++|++||++||+||||||||||||+|+|+.. +++|+|.++|.++. .+.
T Consensus 2 ~~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i~~~~~k~lr~ 78 (258)
T COG3638 2 MMIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQITKLKGKELRK 78 (258)
T ss_pred ceEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccchhccchHHHHH
Confidence 3589999999997 45789999999999999999999999999999999999654 68999999997642 235
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhcc-----ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLS-----AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~-----~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQr 648 (1111)
+|++|||+||++.|.+.+||.+|+..+..-+.+ -++...+.+..+-+.|+.+|+.+.+..+.++ |||||+
T Consensus 79 ~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~-----LSGGQQ 153 (258)
T COG3638 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAST-----LSGGQQ 153 (258)
T ss_pred HHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhcc-----CCcchh
Confidence 788999999999999999999999987543222 1222233345678899999999998888876 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
|||+|||||+.+|+|||.|||+++|||.+++.||+.|+++.+ +|.|||++.|+.+.+ .++|||++-|.+ |+++|+|+
T Consensus 154 QRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA-~~Y~~Riigl~~-G~ivfDg~ 231 (258)
T COG3638 154 QRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLA-KKYADRIIGLKA-GRIVFDGP 231 (258)
T ss_pred HHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHH-HHHHhhheEecC-CcEEEeCC
Confidence 999999999999999999999999999999999999999975 599999999999976 589999999986 58999999
Q ss_pred HhhHHHH
Q 001270 728 VKKVEEY 734 (1111)
Q Consensus 728 ~~~l~~~ 734 (1111)
++++.+.
T Consensus 232 ~~el~~~ 238 (258)
T COG3638 232 ASELTDE 238 (258)
T ss_pred hhhhhHH
Confidence 9987544
No 22
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-45 Score=398.29 Aligned_cols=220 Identities=29% Similarity=0.448 Sum_probs=196.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCe---eCCc-ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGK---NEPI-HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~---~~~~-~~~r~ 576 (1111)
+|.++|+++.+ +...+++|||++|+.||++||+|||||||||||++|+|+.. |++|.|.+||+ +.+. ....+
T Consensus 2 ~i~i~~~~~~~--~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R 77 (345)
T COG1118 2 SIRINNVKKRF--GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDR 77 (345)
T ss_pred ceeehhhhhhc--ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhc
Confidence 57888999988 55679999999999999999999999999999999999875 68999999999 5433 33457
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
+||||||+..+|++|||.|||+|+++.+ ....++.+.+.+++++|+.+.|++..++++.+ |||||||||++|||
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP~Q-----LSGGQrQRVALARA 151 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYPAQ-----LSGGQRQRVALARA 151 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCchh-----cChHHHHHHHHHHH
Confidence 8999999999999999999999998766 23344667778899999999999999988765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+.+|++||||||+++||...+.++.+.|+++.++ |.|+++||||+++ +.+++|++++|++ |+|...|+++++-
T Consensus 152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~ee-a~~ladrvvvl~~-G~Ieqvg~p~ev~ 226 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEE-ALELADRVVVLNQ-GRIEQVGPPDEVY 226 (345)
T ss_pred hhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHH-HHhhcceEEEecC-CeeeeeCCHHHHh
Confidence 99999999999999999999999999999999876 9999999999986 5699999999987 5788999998874
No 23
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.7e-44 Score=369.96 Aligned_cols=211 Identities=29% Similarity=0.426 Sum_probs=188.4
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC------ccccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP------IHSYK 575 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~------~~~~r 575 (1111)
|+|+||++.|+++ +.+|+||||+|++||++-|+||||||||||||+|.+... |++|+|.++|.++. ..-+|
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhh
Confidence 6899999999876 779999999999999999999999999999999999654 68999999999863 22478
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
++||+||||..+.+++||+||++|..+.. +.+..+..++|.++|+.+||.+..+..+.+ |||||||||+|||
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~-----LSGGEQQRvaIAR 150 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALPSQ-----LSGGEQQRVAIAR 150 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCccc-----cCchHHHHHHHHH
Confidence 99999999999999999999999988764 345667778899999999999998887765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEe
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYH 725 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~ 725 (1111)
|++.+|++||.||||.+|||..+.+|++++.++...|+||+|.|||.+. +.++-.+++.|++| +++..
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~G-rl~~d 218 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALEDG-RLVRD 218 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeCC-EEEec
Confidence 9999999999999999999999999999999999999999999999764 45666788888764 66554
No 24
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-44 Score=374.18 Aligned_cols=221 Identities=29% Similarity=0.408 Sum_probs=200.2
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC--CcccccccEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE--PIHSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~--~~~~~r~~Ig 579 (1111)
|++.+|+++|+. ...+++||||+++.||++||+|||||||||+|++|++++. |++|.|+++|.+. .+...|++||
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcc
Confidence 678999999964 3459999999999999999999999999999999999876 6899999999875 3446889999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
.++.+..+|..||++|||.|.+++. ++...+.+++++++.+.|+|.+++|+++++ +|-||||||+|||||++
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iARAlvh 150 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIARALVH 150 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHHHHhc
Confidence 9998889999999999999998875 456667778899999999999999999987 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYF 735 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f 735 (1111)
+|++++|||||||||..++..+.+.++++..+|++||++||.+++ +..+||++++|++ |.+++.|+.+++.+.-
T Consensus 151 ~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~E-vealCDrvivlh~-Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQE-VEALCDRVIVLHK-GEVVLEGSIEALDART 224 (245)
T ss_pred CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHH-HHHhhheEEEEec-CcEEEcCCHHHHHHHH
Confidence 999999999999999999999999999999899999999999975 5679999999987 4789999998876543
No 25
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.4e-43 Score=396.11 Aligned_cols=219 Identities=29% Similarity=0.466 Sum_probs=192.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKII 578 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~I 578 (1111)
.|+++||+++|+ ++.+|+||||+|++||++||+||||||||||+++|+|+.. +++|+|.++|.++.. ...+++|
T Consensus 7 ~i~i~~l~k~~~--~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYG--DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred eEEEEeEEEEEC--CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccchHHHHhcE
Confidence 488999999994 4689999999999999999999999999999999999775 689999999998632 2457889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
|||||++.+++.+||+||+.|.+..+ .....+...+++++++.+||.+..++.+++ |||||||||+||+||+
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVGE-----LSGGMKRRLTLARALV 154 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchhh-----CCHHHHHHHHHHHHHh
Confidence 99999999999999999999866543 122333345678999999999888888865 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
++|++|||||||+|||+.++..+.+.|++++++|+|||++||++++ +.++||++++|.+ |++++.|+++++.+
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e-~~~~~d~i~il~~-G~i~~~g~~~~l~~ 227 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE-AERLCDRLCVIEE-GRKIAEGAPHALIE 227 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 9999999999999999999999999999998789999999999975 5688999999987 57899999988754
No 26
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-44 Score=374.30 Aligned_cols=221 Identities=27% Similarity=0.416 Sum_probs=191.0
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC---CCCceeEEEECCeeCC-----c
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAI---ACKATGLILINGKNEP-----I 571 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~---~~~~sG~I~inG~~~~-----~ 571 (1111)
..++++||++.| +++++|+|||+.|++++++||||||||||||||++|..... ....+|+|.++|+++- .
T Consensus 6 ~~~~~~~l~~yY--g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYY--GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEE--CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 357899999999 57899999999999999999999999999999999998643 2346899999999852 3
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHH
Q 001270 572 HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 572 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQR 650 (1111)
..+|++||+|||.|..|| +|++||+.|+.++.... ..+.++.|+..|+...|++ +.|++-. .+.+|||||+||
T Consensus 84 ~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~---~~~ldeiVe~sLk~AaLWdEVKDrL~~--sa~~LSGGQQQR 157 (253)
T COG1117 84 VELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK---DKELDEIVESSLKKAALWDEVKDRLHK--SALGLSGGQQQR 157 (253)
T ss_pred HHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccc---hHHHHHHHHHHHHHhHhHHHhHHHhhC--CccCCChhHHHH
Confidence 468999999999999998 89999999998875432 2555678899999998864 4444322 356799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
++|||||+.+|+|||||||||+|||.+...|-++|.+|+ +.-|||+|||.+..+ .+..|+..++.. |+++++|++++
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQA-aRvSD~taFf~~-G~LvE~g~T~~ 234 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQA-ARVSDYTAFFYL-GELVEFGPTDK 234 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHH-HHHhHhhhhhcc-cEEEEEcCHHh
Confidence 999999999999999999999999999999999999987 568999999999865 589999999987 58999999987
Q ss_pred H
Q 001270 731 V 731 (1111)
Q Consensus 731 l 731 (1111)
+
T Consensus 235 i 235 (253)
T COG1117 235 I 235 (253)
T ss_pred h
Confidence 6
No 27
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.8e-43 Score=400.75 Aligned_cols=218 Identities=25% Similarity=0.404 Sum_probs=191.2
Q ss_pred EEEEeEEEEEcCC--cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------cc
Q 001270 502 VSFKDLTLTLKGK--NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------HS 573 (1111)
Q Consensus 502 L~~~nLs~~y~~~--~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~ 573 (1111)
|+++||+++|+++ .+.+|+||||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|+++.. ..
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHH
Confidence 6899999999532 3579999999999999999999999999999999999775 689999999998632 12
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaI 653 (1111)
.++.||||||+..+++.+||+||+.++.... ...+.+..+++.++++.+||.+..++++.+ |||||||||+|
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~-----LSgGqkQRV~I 151 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSN-----LSGGQKQRVAI 151 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHH
Confidence 4678999999999999999999999876532 233445556788999999999988888765 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
||||+.+|++||||||||+||+.++..++++|+++.++ |.|||++||+++. +.++||++++|++ |++++.|+++++
T Consensus 152 ARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~-v~~~~d~v~vl~~-G~iv~~g~~~~v 228 (343)
T TIGR02314 152 ARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV-VKRICDCVAVISN-GELIEQGTVSEI 228 (343)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHH
Confidence 99999999999999999999999999999999999865 9999999999975 5688999999986 588999998876
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-43 Score=402.60 Aligned_cols=219 Identities=24% Similarity=0.367 Sum_probs=192.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIG 579 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 579 (1111)
.|+++||+++|+ +++.+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ...++.||
T Consensus 3 ~l~i~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYD-GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIA 79 (356)
T ss_pred EEEEEeEEEEeC-CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEE
Confidence 478999999994 23579999999999999999999999999999999999765 689999999998632 23457899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
||||++.+|+++||+||+.|+.+.+ ...+.+...+++++++.+||.+..++++.+ |||||||||+|||||+.
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPRE-----LSGGQRQRVAMGRAIVR 151 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999999999999986532 234445556789999999999988888765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+|+||||||||++||+.++..+.+.|+++.++ |.|+|+||||+++ +.+++|++++|.+ |+++..|+++++.
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e-a~~l~D~i~vl~~-G~i~~~g~~~~~~ 223 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVE-AMTLADRVVVMNG-GVAEQIGTPVEVY 223 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeC-CEEEEECCHHHHH
Confidence 99999999999999999999999999998765 9999999999975 5689999999976 5889999998873
No 29
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3.6e-43 Score=401.62 Aligned_cols=218 Identities=28% Similarity=0.447 Sum_probs=193.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIG 579 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 579 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ...++.||
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFG--AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred EEEEEEEEEEeC--CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEE
Confidence 588999999994 4679999999999999999999999999999999999765 689999999998642 23467899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
||||++.+||++||+||+.|+...+ ..++.+...+++++++.+||.+..++.+.+ |||||||||+|||||+.
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~-----LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPGQ-----LSGGQQQRVALARALAT 151 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999999999999986532 233445566789999999999988887765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+|++|||||||++||+.++..+.+.|+++.++ |.|+|+||||+++ +..++|++++|++ |+++..|+++++.
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~e-a~~l~d~i~vl~~-G~i~~~g~~~~~~ 223 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEE-ALSMADRIVVMNH-GVIEQVGTPQEIY 223 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 99999999999999999999999999998765 9999999999975 5689999999987 5889999998774
No 30
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-43 Score=378.52 Aligned_cols=217 Identities=29% Similarity=0.494 Sum_probs=186.2
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------cccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------HSYK 575 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~~r 575 (1111)
|+++||++.|+ .+.+|+||||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ..++
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~ 76 (235)
T cd03261 1 IELRGLTKSFG--GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLR 76 (235)
T ss_pred CeEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHh
Confidence 46899999994 4679999999999999999999999999999999999765 588999999987532 2356
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
+.||||+|++.+++.+||+||+.++..... .....+..++++++++.+||.+..++.+++ |||||||||+|||
T Consensus 77 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~ia~ 149 (235)
T cd03261 77 RRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPAE-----LSGGMKKRVALAR 149 (235)
T ss_pred cceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHH
Confidence 789999999999999999999998754221 122333345678899999998887877765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||+++. +.+++|++++|.+ |++++.|+++++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~ 224 (235)
T cd03261 150 ALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDT-AFAIADRIAVLYD-GKIVAEGTPEEL 224 (235)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhcCEEEEEEC-CeEEEecCHHHH
Confidence 999999999999999999999999999999999874 8999999999975 5578999999987 578899988765
No 31
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-43 Score=400.34 Aligned_cols=218 Identities=25% Similarity=0.422 Sum_probs=193.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIG 579 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 579 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ...++.||
T Consensus 6 ~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFG--SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred EEEEEeEEEEEC--CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEE
Confidence 588999999994 4679999999999999999999999999999999999875 689999999998642 23457899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
||||++.+|+++||+||+.|+.+.+ ...+.+..++++++++.+||.+..++++.+ |||||||||+|||||+.
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~-----LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQ-----ISGGQQQRVALARALIL 153 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHHc
Confidence 9999999999999999999987543 233455566789999999999988887765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+|+||||||||++||+.++..+.+.|+++.++ |+|+|+||||+++ +.+++|++++|++ |+++..|+++++.
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e-~~~laD~i~vm~~-G~i~~~g~~~~~~ 225 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSE-AFAVSDTVIVMNK-GKIMQIGSPQELY 225 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 99999999999999999999999999999765 8999999999975 5689999999987 5789999998763
No 32
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=7.7e-43 Score=399.92 Aligned_cols=218 Identities=26% Similarity=0.392 Sum_probs=192.8
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCce--eEEEECCeeCCc-cccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKAT--GLILINGKNEPI-HSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~s--G~I~inG~~~~~-~~~r~~ 577 (1111)
.|+++||+++|+ .+.+|+||||+|++||+++|+|||||||||||++|+|+.. +++ |+|.++|+++.. ...++.
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 5 GIRIDHLRVAYG--ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred EEEEEEEEEEEC--CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCCCCHHHCC
Confidence 478999999994 4679999999999999999999999999999999999775 578 999999988632 234678
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
||||||++.+|+++||+|||.|+...+ ...+.+...+++++++.+||.+..++.+.+ |||||||||+|||||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvaLARAL 152 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPAQ-----LSGGMQQRIAIARAI 152 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChhh-----CCHHHHHHHHHHHHH
Confidence 999999999999999999999987533 234445556789999999999998888765 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALE--GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~--G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+.+|+||||||||+|||+.++..+.+.|+++.++ |.|+|++|||+++ +..++|++++|++ |+++..|+++++.
T Consensus 153 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~e-a~~l~dri~vl~~-G~i~~~g~~~~~~ 227 (362)
T TIGR03258 153 AIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDD-ALTLADKAGIMKD-GRLAAHGEPQALY 227 (362)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 9999999999999999999999999999999876 7999999999975 4689999999986 5889999998874
No 33
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-43 Score=380.51 Aligned_cols=220 Identities=28% Similarity=0.444 Sum_probs=194.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC----cccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP----IHSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~----~~~~r~ 576 (1111)
.++++|++++|+++ ..+|+++|++|++||.++|+|+||||||||+++|+|++. |.+|+|.++|.+.. ...+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKSLLELRQ 79 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhhHHHhhc
Confidence 47899999999765 689999999999999999999999999999999999876 57899999998754 456889
Q ss_pred cEEEEccCCCC-CCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIV-HGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 577 ~IgyV~Qd~~l-~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
++|||||++.. +..-||.|.++|+.... .++.++..++++++++.+|+.+.+++.+.+ |||||||||+||.
T Consensus 80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~-----LSGGqkqRvaIA~ 151 (235)
T COG1122 80 KVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPPFN-----LSGGQKQRVAIAG 151 (235)
T ss_pred ceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCccc-----cCCcceeeHHhhH
Confidence 99999999732 23569999999997643 455666778899999999999998887765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
+|+++|++|||||||||||+.++.++++.|+++.++ |+|||++|||++. +..++|++++|++| +++++|++.++.+
T Consensus 152 vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~-~~~~ad~v~vl~~G-~i~~~g~p~~i~~ 228 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL-VLEYADRVVVLDDG-KILADGDPAEIFN 228 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH-HHhhCCEEEEEECC-EEeecCCHHHHhh
Confidence 999999999999999999999999999999999877 7999999999986 56889999999875 7899999877654
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=396.61 Aligned_cols=221 Identities=26% Similarity=0.419 Sum_probs=192.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIG 579 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 579 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|+++|+++.. ...++.||
T Consensus 2 ~L~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFG--RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVG 77 (353)
T ss_pred EEEEEEEEEEeC--CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHCCEE
Confidence 478999999994 4679999999999999999999999999999999999765 689999999998642 23457899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
||||++.+++++||+||+.|+...... ......+..++++++++.+||.+..++++.+ |||||||||+|||||+
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGq~QRvalArAL~ 152 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALA 152 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHh
Confidence 999999999999999999998653211 1123344456789999999999888888765 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++++ +.+++|++++|.+ |++++.|+++++.
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~e-a~~~~Dri~vl~~-G~i~~~g~~~~i~ 225 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEE-AMEVADRVVVMSQ-GNIEQAGTPDQVW 225 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 999999999999999999999999999999866 8999999999975 4689999999986 5889999998874
No 35
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.3e-42 Score=393.19 Aligned_cols=221 Identities=27% Similarity=0.424 Sum_probs=193.2
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--cccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKI 577 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~ 577 (1111)
..|+++||+++| +++.+|+||||+|++||++||+||||||||||+++|+|++. |++|+|.++|+++.. ...++.
T Consensus 40 ~~i~i~nl~k~y--~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 40 VAIDLAGVSKSY--GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred eeEEEEEEEEEE--CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcchHHHhcc
Confidence 358999999999 45679999999999999999999999999999999999775 689999999998632 245678
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
|||+||++.+++.+||.||+.+....+. ....+...+++++++.+||.+..++.+++ |||||||||+||+||
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~~-----LS~G~kqrv~lA~aL 187 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARAL 187 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChhh-----CCHHHHHHHHHHHHH
Confidence 9999999999999999999997654331 22233344577899999999888888875 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEY 734 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~ 734 (1111)
+++|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +.++||++++|.+ |++++.|+++++.+.
T Consensus 188 ~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e-~~~~~d~i~il~~-G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE-AERLCDRLCVLEA-GRKIAEGRPHALIDE 262 (340)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHHhh
Confidence 99999999999999999999999999999998789999999999975 5689999999987 588999999988643
No 36
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.5e-42 Score=369.47 Aligned_cols=207 Identities=27% Similarity=0.409 Sum_probs=178.3
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---c---ccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---H---SYK 575 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~---~~r 575 (1111)
|+++|++++|+++.+.+|+|+||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++.. . .++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChhHHHHHH
Confidence 67899999995433569999999999999999999999999999999999765 578999999987531 1 246
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
+.++|++|++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+++ |||||||||+|||
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~lar 151 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPMQ-----LSGGEQQRVAIAR 151 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHH
Confidence 78999999999999999999999875432 122233345678999999998888877765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+|
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~-~~~~~d~i~~l~~G 214 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL-VETYRHRTLTLSRG 214 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999997779999999999874 45789999999875
No 37
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.6e-42 Score=397.15 Aligned_cols=218 Identities=24% Similarity=0.384 Sum_probs=192.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIG 579 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 579 (1111)
.|+++||+++|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ...++.||
T Consensus 14 ~L~l~~l~~~~~--~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFD--GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred eEEEEEEEEEEC--CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEE
Confidence 488999999994 4679999999999999999999999999999999999775 689999999998632 23467899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
||||++.+|+++||+|||.|+...+ ..+..+..++++++++.+||.+..++++.+ |||||||||+|||||+.
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~-----LSgGq~QRVaLARaL~~ 161 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVN 161 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999999999999986532 233444455788999999999988888765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+|++|||||||++||..++..+.+.|+++.++ |.|+|+||||+.+ +..++|++++|.+ |+++..|+++++.
T Consensus 162 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~e-a~~laDri~vl~~-G~i~~~g~~~~i~ 233 (375)
T PRK09452 162 KPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEE-ALTMSDRIVVMRD-GRIEQDGTPREIY 233 (375)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 99999999999999999999999999999865 9999999999975 5689999999986 5889999998763
No 38
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-42 Score=367.92 Aligned_cols=216 Identities=30% Similarity=0.454 Sum_probs=185.5
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 579 (1111)
|+++|++++|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|.+... ..+++.++
T Consensus 1 i~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYG--DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIG 76 (220)
T ss_pred CEEEEEEEEEC--CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEE
Confidence 46899999994 4679999999999999999999999999999999999765 589999999987532 23456899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|++|++.+++.+||+||+.+....+ .....+..+.++++++.+||.+..++.+++ |||||||||+|||||+.
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~la~al~~ 148 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVKT-----YSGGMRRRLEIARSLVH 148 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999999999999875432 122223345678999999998888887765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |+++..|+++++
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 219 (220)
T cd03265 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE-AEQLCDRVAIIDH-GRIIAEGTPEEL 219 (220)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeC-CEEEEeCChHHc
Confidence 99999999999999999999999999999876 8999999999975 5578999999986 578888887653
No 39
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=369.96 Aligned_cols=219 Identities=29% Similarity=0.435 Sum_probs=188.0
Q ss_pred EEEEEeEEEEEcCCc--ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc----cc
Q 001270 501 EVSFKDLTLTLKGKN--KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH----SY 574 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~--k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~----~~ 574 (1111)
.|+++||++.|+++. .++|++|||+|.+||++||+|+||||||||.++|+|+.. +++|+|.++|++.... .+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchhh
Confidence 588999999996432 249999999999999999999999999999999999875 6899999999875432 46
Q ss_pred cccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHH
Q 001270 575 KKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 575 r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
++.|.+||||+ .+.|..||++-|.-+... .++.+.++ ++.++++.+||. +++++++.+ |||||||||
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~~--~i~~~L~~VgL~~~~l~R~P~e-----LSGGQ~QRi 150 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQQ--RIAELLDQVGLPPSFLDRRPHE-----LSGGQRQRI 150 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHHH--HHHHHHHHcCCCHHHHhcCchh-----cChhHHHHH
Confidence 78899999997 578899999999876543 22333333 388999999996 456776654 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
+|||||+.+|++||||||||+||+..+.+|+++|.++.++ +.|.|+||||.+. +..+|||+++|++ |.+++.++.++
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~-G~ivE~~~~~~ 228 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDN-GQIVEIGPTEE 228 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeC-CeEEEeechhh
Confidence 9999999999999999999999999999999999999865 8999999999985 5689999999987 58999999988
Q ss_pred HHH
Q 001270 731 VEE 733 (1111)
Q Consensus 731 l~~ 733 (1111)
+..
T Consensus 229 l~~ 231 (252)
T COG1124 229 LLS 231 (252)
T ss_pred hhc
Confidence 753
No 40
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-42 Score=366.27 Aligned_cols=211 Identities=32% Similarity=0.476 Sum_probs=180.1
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGF 580 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 580 (1111)
|+++||++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ...++.++|
T Consensus 1 l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYG--SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGM 76 (213)
T ss_pred CeeeeeEEEeC--CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEE
Confidence 46889999994 4679999999999999999999999999999999999765 689999999987632 234568999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
|+|++.+++.+||+||+.+..... ..........++++++.+||.+..++.+.+ |||||||||+|||||+.+
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPHE-----LSGGQQQRVALARALARE 148 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHHhcC
Confidence 999999998999999998865422 122223344678899999999888887765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
|++|||||||+|||+.++..+++.|+++++ .|+|||++||+++. +.+.+|++++|.+| ++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~v~~l~~G-~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEE-ALALADRIAVMNEG-RIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH-HHHhcCEEEEEECC-EEEecC
Confidence 999999999999999999999999999876 48999999999875 45889999999875 666654
No 41
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=4.3e-42 Score=370.30 Aligned_cols=219 Identities=28% Similarity=0.445 Sum_probs=185.6
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc---c-cccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH---S-YKKI 577 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~---~-~r~~ 577 (1111)
|+++||++.|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++... . .++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (236)
T cd03219 1 LEVRGLTKRFG--GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLG 76 (236)
T ss_pred CeeeeeEEEEC--CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcC
Confidence 46789999994 4679999999999999999999999999999999999765 5789999999875321 1 2456
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccc-------hHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHL-------AKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~-------~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQR 650 (1111)
++||+|++.+++.+||+||+.+.......... ...+....++++++.+||.+..++.+.+ ||||||||
T Consensus 77 i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qr 151 (236)
T cd03219 77 IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGE-----LSYGQQRR 151 (236)
T ss_pred EEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhh-----CCHHHHHH
Confidence 99999999999999999999987543211100 1223345678999999998887877765 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+++|++++|.+ |++++.|++++
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~ 229 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV-VMSLADRVTVLDQ-GRVIAEGTPDE 229 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEeC-CEEEeecCHHH
Confidence 999999999999999999999999999999999999988789999999999975 5578999999987 57889998876
Q ss_pred H
Q 001270 731 V 731 (1111)
Q Consensus 731 l 731 (1111)
+
T Consensus 230 ~ 230 (236)
T cd03219 230 V 230 (236)
T ss_pred h
Confidence 5
No 42
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=5e-42 Score=384.66 Aligned_cols=219 Identities=28% Similarity=0.427 Sum_probs=189.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKII 578 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~I 578 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ...++.|
T Consensus 4 ~i~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYG--DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeC--CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHHHHhhcE
Confidence 488999999994 4679999999999999999999999999999999999765 589999999987532 2346789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
|||+|++.+++.+||+||+.+..... .....+...+++++++.+||.+..++.+++ |||||||||+|||||+
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~ 151 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARALI 151 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchhh-----CCHHHHHHHHHHHHHh
Confidence 99999999999999999998754432 122233334577899999999888888765 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+++|++++|.+ |++++.|+++++.+
T Consensus 152 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 152 NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE-AERLCDRLCVLES-GRKIAEGRPHALID 224 (303)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 9999999999999999999999999999998789999999999975 5678999999986 57899999988753
No 43
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-42 Score=370.48 Aligned_cols=220 Identities=29% Similarity=0.430 Sum_probs=186.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIG 579 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 579 (1111)
.|+++||++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ...++.++
T Consensus 2 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFG--DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQERNVG 77 (239)
T ss_pred EEEEEeEEEEEC--CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCccccceE
Confidence 478999999994 4679999999999999999999999999999999999765 589999999987532 22356799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
||+|++.+++.+||+||+.++...... ......+..+.++++++.+||.+..++.+.+ |||||||||+|||||+
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~ 152 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALA 152 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHHh
Confidence 999999999889999999987543211 0011223334678899999998877877765 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 224 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEE-ALEVADRVVVMNK-GRIEQVGTPDEV 224 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CeEEEecCHHHH
Confidence 999999999999999999999999999999865 8999999999874 4578999999986 578899988765
No 44
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-42 Score=366.55 Aligned_cols=214 Identities=28% Similarity=0.399 Sum_probs=182.6
Q ss_pred EEEEeEEEEEcCCc--ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 502 VSFKDLTLTLKGKN--KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~~--k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
|+++||++.|++.. +.+|+|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++. ..++.++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~--~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVT--GPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECc--cccCcEE
Confidence 46899999995311 579999999999999999999999999999999999765 58999999998764 3467899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
||+|++.+++.+||+||+.+....+ ........+.++++++.+||.+..++.+++ |||||||||+|||||+.
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al~~ 148 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPHQ-----LSGGMRQRVALARALAV 148 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHHHHHHHc
Confidence 9999999998899999999875432 122233345678999999998877877765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeC-CcEEEEecCH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAK-GGLTVYHGSV 728 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~-GG~iv~~G~~ 728 (1111)
+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++. +.+.+|++++|.+ +|++++.+++
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE-AVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH-HHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999865 48999999999874 4578999999985 4688887765
No 45
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-42 Score=393.98 Aligned_cols=218 Identities=28% Similarity=0.386 Sum_probs=190.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIG 579 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 579 (1111)
.|+++||+++|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ...++.||
T Consensus 3 ~l~i~~l~~~~~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYG--DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVG 78 (369)
T ss_pred EEEEEEEEEEeC--CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHhHCCEE
Confidence 478999999994 4679999999999999999999999999999999999765 689999999988632 22456799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
||+|++.+++++||+||+.|+...+ .....+..++++++++.+||.+..++.+.+ |||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~-----LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999999999999986532 123334445789999999999888888765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+|+||||||||+|||+.++..+.+.|+++.++ |.|||++|||+++ +..++|++++|.+ |+++..|+++++.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~-~~~~~d~i~vl~~-G~i~~~g~~~~i~ 222 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE-AMTLADKIVVLDA-GRVAQVGKPLELY 222 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 99999999999999999999999999998765 8999999999975 5689999999986 5789999998764
No 46
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-42 Score=393.94 Aligned_cols=218 Identities=27% Similarity=0.406 Sum_probs=192.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIG 579 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 579 (1111)
.|+++|++++|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ...++.||
T Consensus 19 ~l~l~~v~~~~~--~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 19 LLEIRNLTKSFD--GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred eEEEEeEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEE
Confidence 488999999994 4679999999999999999999999999999999999875 688999999998632 24567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
||||++.+|+++||+|||.|+.+.+ ...+.+..++++++++.+||.+..++.+.+ |||||||||+|||||+.
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~-----LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPHQ-----LSGGQRQRVALARSLAK 166 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999999999999986532 223444556789999999999888887765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+|+||||||||++||..++..+.+.|+++.++ |.|+|++|||+++ +..++|++++|.+ |+++..|+++++.
T Consensus 167 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e-a~~laDri~vl~~-G~i~~~g~~~~~~ 238 (377)
T PRK11607 167 RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEE-AMTMAGRIAIMNR-GKFVQIGEPEEIY 238 (377)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEEeC-CEEEEEcCHHHHH
Confidence 99999999999999999999999999998754 8999999999975 5689999999986 5889999998864
No 47
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-42 Score=389.92 Aligned_cols=219 Identities=27% Similarity=0.427 Sum_probs=189.3
Q ss_pred EEEEeEEEEEcC--CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---c---c
Q 001270 502 VSFKDLTLTLKG--KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---H---S 573 (1111)
Q Consensus 502 L~~~nLs~~y~~--~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~---~ 573 (1111)
|+++||+++|+. +.+.+|+|+||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|+++.. . .
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHH
Confidence 688999999962 24679999999999999999999999999999999999875 689999999987632 1 2
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaI 653 (1111)
+++.||||||++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+.+ |||||||||+|
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qRv~l 151 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPAQ-----LSGGQKQRVAI 151 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHH
Confidence 3678999999999999999999999876432 123334445688999999999888887765 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||+++. +.+++|++++|.+ |++++.|+++++.
T Consensus 152 AraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~-i~~~~d~v~~l~~-G~i~~~g~~~~~~ 229 (343)
T PRK11153 152 ARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDV-VKRICDRVAVIDA-GRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 8999999999975 5578999999986 5789999988763
No 48
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=7.9e-42 Score=367.34 Aligned_cols=216 Identities=25% Similarity=0.471 Sum_probs=185.1
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cc-cccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HS-YKKI 577 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~-~r~~ 577 (1111)
|+++||++.|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|++... .. .++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~ 76 (232)
T cd03218 1 LRAENLSKRYG--KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLG 76 (232)
T ss_pred CeEEEEEEEeC--CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhcc
Confidence 46899999994 4679999999999999999999999999999999999765 688999999987532 12 2457
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
++|++|++.+++.+||+||+.+....+. ....+....++++++.+|+.+..++.+.+ |||||||||+|||||
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al 148 (232)
T cd03218 77 IGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKASS-----LSGGERRRVEIARAL 148 (232)
T ss_pred EEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHH
Confidence 9999999999999999999988654321 22233345678899999998887877765 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 220 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRE-TLSITDRAYIIYE-GKVLAEGTPEEI 220 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CeEEEEeCHHHh
Confidence 99999999999999999999999999999998779999999999974 5689999999986 578899988765
No 49
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-42 Score=369.71 Aligned_cols=221 Identities=29% Similarity=0.431 Sum_probs=184.5
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------cccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------HSYK 575 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~~r 575 (1111)
|+++||+++|++ .+.+|+|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ..++
T Consensus 1 l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (241)
T cd03256 1 IEVENLSKTYPN-GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLR 77 (241)
T ss_pred CEEeeEEEecCC-ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHH
Confidence 468999999943 2679999999999999999999999999999999999765 578999999987532 2346
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhc-----cccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRL-----SAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~-----~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQR 650 (1111)
+.++||+|++.+++.+||+||+.+...... ..........+.++++++.+||.+..++.+.+ ||||||||
T Consensus 78 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr 152 (241)
T cd03256 78 RQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQ-----LSGGQQQR 152 (241)
T ss_pred hccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCccc-----CCHHHHHH
Confidence 789999999999999999999987542110 00011122334678899999998877776654 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+++|++++|.+ |++++.|+++
T Consensus 153 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~ 230 (241)
T cd03256 153 VAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGPPA 230 (241)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEeecCHH
Confidence 99999999999999999999999999999999999999764 8999999999975 5578999999986 5788999988
Q ss_pred hHH
Q 001270 730 KVE 732 (1111)
Q Consensus 730 ~l~ 732 (1111)
++.
T Consensus 231 ~~~ 233 (241)
T cd03256 231 ELT 233 (241)
T ss_pred Hhh
Confidence 763
No 50
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=379.23 Aligned_cols=230 Identities=24% Similarity=0.364 Sum_probs=191.5
Q ss_pred EEEEeEEEEEcCCc---ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-------
Q 001270 502 VSFKDLTLTLKGKN---KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------- 571 (1111)
Q Consensus 502 L~~~nLs~~y~~~~---k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------- 571 (1111)
|+++||+++|+.+. +.+|+||||+|++||+++|+||||||||||+++|+|++. +.+|+|+++|.++..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccccccH
Confidence 68999999996322 359999999999999999999999999999999999765 689999999987531
Q ss_pred ccccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHH
Q 001270 572 HSYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 572 ~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQr 648 (1111)
..+++.||||+|++ .+++ .||.||+.|+.... ..+..+..+++.++++.+||. +..++.+. .||||||
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----~LSgGqk 150 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPF-----ELSGGQM 150 (288)
T ss_pred HHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCcc-----cCCHHHH
Confidence 23567899999986 4554 69999999876432 223444456788999999996 46666665 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||+|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+++|++++|.+ |++++.|++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~-~~~~~dri~~l~~-G~i~~~g~~ 228 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD-VADYADYVYLLEK-GHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999998789999999999975 4578999999986 578999999
Q ss_pred hhHH---HHHHhCCCCCCC
Q 001270 729 KKVE---EYFAGLGINVPE 744 (1111)
Q Consensus 729 ~~l~---~~f~~~g~~~p~ 744 (1111)
+++. +.+...|+..|.
T Consensus 229 ~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred HHHHcCHHHHHHcCCCCCh
Confidence 8873 334556665553
No 51
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=9.1e-42 Score=364.03 Aligned_cols=217 Identities=30% Similarity=0.455 Sum_probs=184.8
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 579 (1111)
|+++||++.|+++.+++|+||||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|+++.. ..+++.+|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEE
Confidence 46899999995322679999999999999999999999999999999999765 589999999987532 23567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
||+|++.+++.+||+||+.+...... ....+..++++++++.+||.+..++.+++ |||||||||+|||||+.
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~ 150 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIG 150 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChhhh-----CCHHHHHHHHHHHHHhc
Confidence 99999999989999999988654321 22223344678899999998887777765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 151 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~~~~~d~i~~l~~-g~i~~~~~~~~~ 219 (220)
T cd03263 151 GPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDE-AEALCDRIAIMSD-GKLRCIGSPQEL 219 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHH-HHHhcCEEEEEEC-CEEEecCCHHHc
Confidence 9999999999999999999999999999875 5999999999975 4578999999987 578888987754
No 52
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.5e-41 Score=380.56 Aligned_cols=218 Identities=24% Similarity=0.391 Sum_probs=190.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKII 578 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~I 578 (1111)
.++++|++++|+ ++.+|+|+||+|++||++||+|||||||||||++|+|+.. +++|+|.++|++... ...++.+
T Consensus 2 ~l~~~~l~~~~~--~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~i 77 (301)
T TIGR03522 2 SIRVSSLTKLYG--TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEEEC--CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhce
Confidence 478999999994 5679999999999999999999999999999999999765 689999999987632 2456789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
||+||++.+++.+||.|||.+.+..+ .....+..++++++++.+||.+..++.++. |||||||||+||+||+
T Consensus 78 g~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~al~ 149 (301)
T TIGR03522 78 GYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALI 149 (301)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchhh-----CCHHHHHHHHHHHHHh
Confidence 99999999999999999999876543 122333345678999999999888888765 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++. +.+++|++++|++ |++++.|+.+++..
T Consensus 150 ~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~-~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 150 HDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQE-VEAICDRVIIINK-GKIVADKKLDELSA 221 (301)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHHH
Confidence 99999999999999999999999999999864 7999999999974 5689999999986 58899999998754
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-41 Score=366.73 Aligned_cols=218 Identities=28% Similarity=0.437 Sum_probs=186.0
Q ss_pred EEEEeEEEEEcCC--cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc------c
Q 001270 502 VSFKDLTLTLKGK--NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH------S 573 (1111)
Q Consensus 502 L~~~nLs~~y~~~--~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~------~ 573 (1111)
|+++||+++|++. .+.+|+++||+|++||+++|+||||||||||+++|+|++. +.+|+|.++|+++... .
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHH
Confidence 6789999999532 1279999999999999999999999999999999999875 5889999999875321 2
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaI 653 (1111)
.++.++|++|++.+++.+|++||+.+....+. .........++++++.+||.+..++.+.+ |||||||||+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~l 151 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYPAQ-----LSGGQKQRVGI 151 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcChhh-----CCHHHHHHHHH
Confidence 35789999999999999999999988754321 22233345678899999998887777654 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 228 (233)
T cd03258 152 ARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEV-VKRICDRVAVMEK-GEVVEEGTVEEV 228 (233)
T ss_pred HHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEecCHHHH
Confidence 99999999999999999999999999999999999765 8999999999874 5578999999986 578899987765
No 54
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=7.3e-42 Score=366.74 Aligned_cols=218 Identities=28% Similarity=0.372 Sum_probs=181.2
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC---CCceeEEEECCeeCCc-----cc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA---CKATGLILINGKNEPI-----HS 573 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~-----~~ 573 (1111)
|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+... .+.+|+|.++|+++.. ..
T Consensus 1 i~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYG--DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 46899999994 45799999999999999999999999999999999998610 3688999999987532 23
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaI 653 (1111)
+++.+||++|++.++ .+||+||+.+....+. .....+..++++++++.+||.+..++.+. ++.|||||||||+|
T Consensus 79 ~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~l 152 (227)
T cd03260 79 LRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCL 152 (227)
T ss_pred HHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHH
Confidence 467899999999888 7999999988754321 11112233567889999999877666530 23599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
||||+.+|++|||||||+|||+.++..+++.|++++++ +|||++||+++. +.+.+|++++|.+ |++++.|++++
T Consensus 153 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~ 226 (227)
T cd03260 153 ARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQ-AARVADRTAFLLN-GRLVEFGPTEQ 226 (227)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHH-HHHhCCEEEEEeC-CEEEEecCccc
Confidence 99999999999999999999999999999999999877 999999999875 4578999999987 57888888764
No 55
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-41 Score=376.46 Aligned_cols=220 Identities=27% Similarity=0.417 Sum_probs=186.0
Q ss_pred EEEEEeEEEEEcCC---cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGK---NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~---~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++||++.|+.. .+.+|+||||+|++||++||+||||||||||+++|+|+.. +.+|+|.++|+++.. .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKVKLS 79 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCccHH
Confidence 47899999999532 1469999999999999999999999999999999999765 689999999988642 2
Q ss_pred cccccEEEEccCCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC--ccccccccCccCCCCCHHHHH
Q 001270 573 SYKKIIGFVPQDDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ--TVRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~--~~~d~~vg~~~~rgLSGGQrQ 649 (1111)
..++.||||||++. .+..+||+|||.|+.... .....+..++++++++.+||. +..++.+.+ |||||||
T Consensus 80 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~-----LSgGq~q 151 (287)
T PRK13637 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFE-----LSGGQKR 151 (287)
T ss_pred HHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCccc-----CCHHHHH
Confidence 45678999999973 233579999999875432 233444455788999999997 566776654 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||++||+++. +.+++|++++|.+ |++++.|++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~drv~~l~~-G~i~~~g~~ 229 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMED-VAKLADRIIVMNK-GKCELQGTP 229 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999999765 9999999999875 4578999999987 578899999
Q ss_pred hhHH
Q 001270 729 KKVE 732 (1111)
Q Consensus 729 ~~l~ 732 (1111)
+++.
T Consensus 230 ~~~~ 233 (287)
T PRK13637 230 REVF 233 (287)
T ss_pred HHHH
Confidence 8864
No 56
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-41 Score=360.94 Aligned_cols=210 Identities=28% Similarity=0.462 Sum_probs=180.4
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 581 (1111)
|+++|+++.|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++.. ..++.++|+
T Consensus 1 l~~~~l~~~~~--~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFG--RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI-AARNRIGYL 75 (210)
T ss_pred CEEEEEEEEEC--CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH-HHHccEEEe
Confidence 46899999994 4679999999999999999999999999999999999765 689999999987543 456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 001270 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEP 661 (1111)
Q Consensus 582 ~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P 661 (1111)
+|++.+++.+||+||+.+....+ .....+..+.++++++.+|+.+..++.+.+ |||||||||+|||+|+.+|
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p 147 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEE-----LSKGNQQKVQFIAAVIHDP 147 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHhh-----CCHHHHHHHHHHHHHhcCC
Confidence 99999999999999998865432 122233345678899999998877777655 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 662 SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 662 ~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+++|++++|.+| ++++.|
T Consensus 148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~g-~i~~~~ 210 (210)
T cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL-VEELCDRVLLLNKG-RAVLYG 210 (210)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHhhhEEEEEeCC-EEEecC
Confidence 9999999999999999999999999988778999999999875 45789999999874 666543
No 57
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.5e-41 Score=360.53 Aligned_cols=211 Identities=28% Similarity=0.408 Sum_probs=180.2
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGF 580 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 580 (1111)
|+++|+++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|++. +.+|+|.++|+++.. ...++.++|
T Consensus 1 i~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFG--NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAM 76 (213)
T ss_pred CEEEeeEEEEC--CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEE
Confidence 46899999994 4579999999999999999999999999999999999765 589999999987632 223467999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
++|++.+++.+||+||+.+..... .....+..+.++++++.+||.+..++.+++ ||||||||++|||||+.+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~laral~~~ 148 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPKQ-----LSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChhh-----CCHHHHHHHHHHHHHhcC
Confidence 999999998899999998875432 122233345678899999998888887765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVE-AMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEEEC-CEEEecC
Confidence 9999999999999999999999999999864 8999999999874 4578999999987 5777765
No 58
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.7e-42 Score=351.28 Aligned_cols=215 Identities=31% Similarity=0.456 Sum_probs=187.2
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGF 580 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 580 (1111)
|.+++|.++|+. .=-.++++|+.||++||+||||||||||||+|+|+.. |.+|+|.|||++... ....|-+++
T Consensus 2 l~L~~V~~~y~~----~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSM 75 (231)
T ss_pred ccccceEEeeCc----ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhh
Confidence 456788888842 2346789999999999999999999999999999765 689999999998643 356788999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
+||+.++|.+|||.+|+.++....+ .+ .++.+++++.++.++||..+.++.+++ |||||||||+|||+|+++
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGqRQRvALARclvR~ 147 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVRE 147 (231)
T ss_pred hhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCccc-----cCchHHHHHHHHHHHhcc
Confidence 9999999999999999999865332 12 234456789999999999999999886 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
-+||+||||+|+|||.-+.+.+.++.++.. ++.|++||||+|+. +.+++|+++++++ |+|.++|+.+++.
T Consensus 148 ~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D-a~~ia~~~~fl~~-Gri~~~g~~~~~~ 218 (231)
T COG3840 148 QPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED-AARIADRVVFLDN-GRIAAQGSTQELL 218 (231)
T ss_pred CCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhhhceEEEeC-CEEEeeccHHHHh
Confidence 999999999999999999999999999975 48999999999986 5689999999987 5899999987653
No 59
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.4e-41 Score=362.13 Aligned_cols=213 Identities=31% Similarity=0.480 Sum_probs=181.8
Q ss_pred EEEEeEEEEEcCCc--ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--cccccc
Q 001270 502 VSFKDLTLTLKGKN--KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKI 577 (1111)
Q Consensus 502 L~~~nLs~~y~~~~--k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~ 577 (1111)
|+++||++.|++.. +.+|+|+||+|++||+++|+|+|||||||||++|+|+.+ +++|+|.++|+++.. ..+++.
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHHHHhh
Confidence 67899999995321 179999999999999999999999999999999999765 589999999987642 245678
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
++|++|++.+++.+||+||+.+....+ .....+....++++++.+||.+..++.+++ |||||||||+|||||
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral 151 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVGG-----FSTGMRQKVAIARAL 151 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhhh-----cCHHHHHHHHHHHHH
Confidence 999999999999999999998865432 122333445678999999999888887765 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +...+|++++|.+| ++++.|
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~i~~l~~G-~i~~~~ 218 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE-VERLCDRVVVLHRG-RVVYEG 218 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhcCEEEEEECC-EEeecC
Confidence 99999999999999999999999999999997779999999999874 45789999999875 666543
No 60
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.2e-41 Score=362.74 Aligned_cols=206 Identities=29% Similarity=0.457 Sum_probs=175.9
Q ss_pred EEEEeEEEEEcCCc--ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc------c
Q 001270 502 VSFKDLTLTLKGKN--KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH------S 573 (1111)
Q Consensus 502 L~~~nLs~~y~~~~--k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~------~ 573 (1111)
|+++||+++|+++. +.+|+|+||+|++||+++|+|||||||||||++|+|++. +.+|+|.++|+++... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHH
Confidence 46899999995321 579999999999999999999999999999999999765 5899999999875321 1
Q ss_pred -ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 001270 574 -YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 574 -~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
.++.++|++|++.+++.+||+||+.+....+. ....+..+.++++++.+||.+..++.+.+ |||||||||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~ 150 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYPSE-----LSGGQQQRVA 150 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcChhh-----cCHHHHHHHH
Confidence 24679999999999999999999998754321 12223345678999999998877777765 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
|||||+.+|+||||||||+|||+.++..+.+.|+++++ +|+|||++||+++. + ..+|++++|++|
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~G 216 (218)
T cd03255 151 IARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRDG 216 (218)
T ss_pred HHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeCC
Confidence 99999999999999999999999999999999999987 58999999999875 4 489999999875
No 61
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.6e-41 Score=362.39 Aligned_cols=215 Identities=31% Similarity=0.492 Sum_probs=181.9
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc---c-cccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH---S-YKKI 577 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~---~-~r~~ 577 (1111)
|+++||+++|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++... . .++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (222)
T cd03224 1 LEVENLNAGYG--KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAG 76 (222)
T ss_pred CEEeeEEeecC--CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcC
Confidence 46899999994 4579999999999999999999999999999999999865 6889999999875321 1 3567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHc-CCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTL-GLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~L-GL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
++|++|++.+++.+||+||+.+...... ..+....++++++.+ ++.+..++.+.+ |||||||||+||||
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~-----LS~G~~qrv~lara 146 (222)
T cd03224 77 IGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAGT-----LSGGEQQMLAIARA 146 (222)
T ss_pred eEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchhh-----CCHHHHHHHHHHHH
Confidence 9999999999999999999998754321 112234567788888 577767776654 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +.+.+|++++|.+ |+++..|+.+++.
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~~ 220 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF-ALEIADRAYVLER-GRVVLEGTAAELL 220 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhccEEEEeeC-CeEEEeCCHHHHh
Confidence 999999999999999999999999999999998778999999999874 4588999999986 5788899877653
No 62
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-41 Score=376.14 Aligned_cols=219 Identities=26% Similarity=0.408 Sum_probs=185.2
Q ss_pred EEEEEeEEEEEcCC---cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------
Q 001270 501 EVSFKDLTLTLKGK---NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------ 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~---~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------ 571 (1111)
.|+++||+++|++. .+.+|+||||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~ 79 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKKNKK 79 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECccccccch
Confidence 47899999999632 1469999999999999999999999999999999999765 688999999997631
Q ss_pred -ccccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHH
Q 001270 572 -HSYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 572 -~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQ 647 (1111)
...++.||||||++ .++ ..||+||+.|+.... .....+..++++++++.+||. +..++.+.+ |||||
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq 150 (290)
T PRK13634 80 LKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPFE-----LSGGQ 150 (290)
T ss_pred HHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCccc-----CCHHH
Confidence 23567899999986 455 479999999875432 223333445688999999996 566776654 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++||+++. +.+.+|++++|.+ |++++.|
T Consensus 151 ~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~-~~~~~drv~~l~~-G~i~~~g 228 (290)
T PRK13634 151 MRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED-AARYADQIVVMHK-GTVFLQG 228 (290)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999765 9999999999975 5688999999986 5789999
Q ss_pred CHhhHH
Q 001270 727 SVKKVE 732 (1111)
Q Consensus 727 ~~~~l~ 732 (1111)
+++++.
T Consensus 229 ~~~~~~ 234 (290)
T PRK13634 229 TPREIF 234 (290)
T ss_pred CHHHHh
Confidence 988763
No 63
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.8e-41 Score=365.43 Aligned_cols=218 Identities=24% Similarity=0.406 Sum_probs=186.4
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-----ccccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-----HSYKK 576 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----~~~r~ 576 (1111)
|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|.++.. ..+++
T Consensus 2 l~~~~l~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (240)
T PRK09493 2 IEFKNVSKHFG--PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVDERLIRQ 77 (240)
T ss_pred EEEEeEEEEEC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChhHHHHhh
Confidence 67899999994 4679999999999999999999999999999999999764 689999999987642 23467
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.++|++|++.+++.+||+||+.+...... .....+..+.+.++++.+||++..++.+.+ |||||||||+||||
T Consensus 78 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~a 150 (240)
T PRK09493 78 EAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYPSE-----LSGGQQQRVAIARA 150 (240)
T ss_pred ceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcChhh-----cCHHHHHHHHHHHH
Confidence 89999999999989999999988642111 122333345678999999998877877654 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|++++|.+ |++++.|+.+++.
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~~ 224 (240)
T PRK09493 151 LAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGF-AEKVASRLIFIDK-GRIAEDGDPQVLI 224 (240)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEeeCCHHHHh
Confidence 999999999999999999999999999999988779999999999975 4578999999986 5788999887653
No 64
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.4e-41 Score=380.91 Aligned_cols=209 Identities=29% Similarity=0.436 Sum_probs=182.2
Q ss_pred CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccEEEEccCCCCCCCC
Q 001270 514 KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKIIGFVPQDDIVHGNL 591 (1111)
Q Consensus 514 ~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~IgyV~Qd~~l~~~L 591 (1111)
+++.+|+||||+|++||++||+||||||||||+++|+|++. +++|+|.++|+++.. ..+++.|||+||++.+++.+
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 34679999999999999999999999999999999999875 689999999987632 23567899999999999999
Q ss_pred CHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001270 592 TVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671 (1111)
Q Consensus 592 TV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTS 671 (1111)
||+||+.+.+..+ .....+..++++++++.+||.+..++.+++ |||||||||+||+||+.+|++|||||||+
T Consensus 82 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVGT-----YSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999999876543 122333345688999999999888888765 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHH
Q 001270 672 GLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEY 734 (1111)
Q Consensus 672 GLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~ 734 (1111)
|||+.++..+++.|++++++|+|||++||+++. +.+.+|++++|.+ |++++.|+++++.+.
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~-~~~~~d~v~~l~~-G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEE-ADKLCDRIAIIDH-GRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHHHHh
Confidence 999999999999999998789999999999974 5688999999986 578999999887554
No 65
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.9e-41 Score=392.59 Aligned_cols=220 Identities=28% Similarity=0.419 Sum_probs=190.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 577 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||||+|+|++. +.+|+|.++|+++.. ..++++
T Consensus 3 ~L~~~nls~~y~--~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~~~~~~~ 78 (402)
T PRK09536 3 MIDVSDLSVEFG--DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSARAASRR 78 (402)
T ss_pred eEEEeeEEEEEC--CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCHHHHhcc
Confidence 478999999994 5789999999999999999999999999999999999775 689999999987532 346778
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
||||+|++.+++.+||+||+.++...+.. .........++++++++.+||.+..++.+.+ |||||||||+||||
T Consensus 79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~-----LSgGerQRv~IArA 153 (402)
T PRK09536 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTS-----LSGGERQRVLLARA 153 (402)
T ss_pred eEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHH
Confidence 99999999998899999999986432110 0101123345689999999999988888765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|+++|+||||||||+|||+.++.+++++|++++++|+|||+++|+++. +.+++|++++|++ |++++.|+++++
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~-~~~~adrii~l~~-G~iv~~G~~~ev 226 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDL-AARYCDELVLLAD-GRVRAAGPPADV 226 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEecCHHHH
Confidence 999999999999999999999999999999998779999999999985 4689999999986 578899999875
No 66
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.2e-41 Score=366.83 Aligned_cols=218 Identities=26% Similarity=0.405 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---------
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--------- 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--------- 571 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 78 (250)
T PRK11264 3 AIEVKNLVKKFH--GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARSLSQQKG 78 (250)
T ss_pred cEEEeceEEEEC--CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccccccchhh
Confidence 378999999994 4579999999999999999999999999999999999765 578999999987531
Q ss_pred --ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 001270 572 --HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 572 --~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQ 649 (1111)
..+++.++||+|++.+++.+||+||+.++..... .....+..+.++++++.+||.+..++.+++ |||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~Gq~q 151 (250)
T PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPRR-----LSGGQQQ 151 (250)
T ss_pred HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChhh-----CChHHHH
Confidence 1345689999999999988999999988543111 122233345678899999998877776655 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|+.+
T Consensus 152 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~ 229 (250)
T PRK11264 152 RVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF-ARDVADRAIFMDQ-GRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999999999999998779999999999875 5578999999986 5788999987
Q ss_pred hH
Q 001270 730 KV 731 (1111)
Q Consensus 730 ~l 731 (1111)
++
T Consensus 230 ~~ 231 (250)
T PRK11264 230 AL 231 (250)
T ss_pred HH
Confidence 65
No 67
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-41 Score=378.20 Aligned_cols=219 Identities=26% Similarity=0.392 Sum_probs=185.4
Q ss_pred EEEEEeEEEEEcCCc---ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC-------
Q 001270 501 EVSFKDLTLTLKGKN---KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP------- 570 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~---k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~------- 570 (1111)
.|+++||+++|+++. ..+|+||||+|++||+++|+||||||||||+++|+|++. +++|+|+++|++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 79 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKKTKE 79 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceeccccccccc
Confidence 478999999996432 359999999999999999999999999999999999875 57899999986531
Q ss_pred --------------------cccccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC
Q 001270 571 --------------------IHSYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ 628 (1111)
Q Consensus 571 --------------------~~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~ 628 (1111)
...+++.||||||++ .++ ..||+|||.|+.... .....+..++++++++.+||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 155 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLD 155 (305)
T ss_pred ccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCC
Confidence 123467899999985 344 579999999876432 233444456789999999996
Q ss_pred -ccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHH
Q 001270 629 -TVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALF 707 (1111)
Q Consensus 629 -~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~ 707 (1111)
+..++.+.+ |||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||++||+++. +.
T Consensus 156 ~~~~~~~~~~-----LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~-~~ 229 (305)
T PRK13651 156 ESYLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDN-VL 229 (305)
T ss_pred hhhhhCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHH-HH
Confidence 677777655 99999999999999999999999999999999999999999999998779999999999875 45
Q ss_pred HhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 708 RMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 708 ~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+.+|++++|.+ |++++.|+++++.
T Consensus 230 ~~adrv~vl~~-G~i~~~g~~~~~~ 253 (305)
T PRK13651 230 EWTKRTIFFKD-GKIIKDGDTYDIL 253 (305)
T ss_pred HhCCEEEEEEC-CEEEEECCHHHHh
Confidence 88999999976 5789999998863
No 68
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-42 Score=407.50 Aligned_cols=263 Identities=25% Similarity=0.397 Sum_probs=213.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhcccccccccccccccccccCCCceEEEEEeEEEEEcCC-cceeEeeeEEEEeCCeE
Q 001270 453 LSTHSQIFNYAYAQLEKEKALQQENKNLTFSGVVSMATNTEVRKRPLIEVSFKDLTLTLKGK-NKHLLRCVTGKIRPGRI 531 (1111)
Q Consensus 453 l~~~~~~~~~a~~~l~~~~~~~~e~~~l~~~~~~s~~~~~~~~~~~~i~L~~~nLs~~y~~~-~k~IL~~VS~~I~~Gei 531 (1111)
++..|..++.+.++.++..++....+.+..+|.. .+....-.|+|+||+|.|+.. +..||+|+||+|+|||+
T Consensus 424 ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~-------~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~ 496 (716)
T KOG0058|consen 424 LSSFYSELMKGVGASERVFELMDRKPRIPLTGTL-------APDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEV 496 (716)
T ss_pred HHHHHHHHHHhcchHHHHHHHhccCCCCCCCCcc-------ccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCE
Confidence 4555666667777777777777666554444311 011123469999999999854 45799999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC---CcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhcccc
Q 001270 532 TAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE---PIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAH 608 (1111)
Q Consensus 532 vaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~ 608 (1111)
+|||||||+||||+.++|..++. |++|+|++||+|+ +...+|++||+|.|+|.||. -||+|||.|+......+.
T Consensus 497 vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~~~t~e~ 573 (716)
T KOG0058|consen 497 VALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLDNATDEE 573 (716)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCCCCCHHH
Confidence 99999999999999999999765 7999999999986 34568899999999999995 499999999976433334
Q ss_pred chHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001270 609 LAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRRE 688 (1111)
Q Consensus 609 ~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~l 688 (1111)
+..+.+.+.+++++.. +.+-.|+.+|+ .+..||||||||+||||||++||.||||||.||+||.+++..|.+.|.++
T Consensus 574 i~~AAk~ANah~FI~~--~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~ 650 (716)
T KOG0058|consen 574 IEAAAKMANAHEFITN--FPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRL 650 (716)
T ss_pred HHHHHHHhChHHHHHh--CccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHh
Confidence 4445555566777664 55667899997 34479999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 689 ALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 689 a~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
.+ ++|||+|.|+++ ..+.+|+|+++++ |++++.|+.+|+.
T Consensus 651 ~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G~V~E~G~h~eLl 690 (716)
T KOG0058|consen 651 MQ-GRTVLVIAHRLS--TVRHADQIVVIDK-GRVVEMGTHDELL 690 (716)
T ss_pred hc-CCeEEEEehhhh--HhhhccEEEEEcC-CeEEecccHHHHh
Confidence 64 599999999987 3589999999986 5899999988875
No 69
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.4e-41 Score=367.76 Aligned_cols=220 Identities=26% Similarity=0.403 Sum_probs=183.9
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------cccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------HSYK 575 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~~r 575 (1111)
|+++||+++|+ .++.+|+|+||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++.. ..++
T Consensus 2 l~~~~l~~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 2 LEVENLSKVYP-NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred eEEEeeeeecC-CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHH
Confidence 67899999994 14679999999999999999999999999999999999765 589999999987532 1246
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhc-----cccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRL-----SAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~-----~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQR 650 (1111)
+.+|||+|++.+++.+||+||+.++..... .......+..++++++++.+||.+..++.+.+ ||||||||
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qr 153 (243)
T TIGR02315 79 RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQ-----LSGGQQQR 153 (243)
T ss_pred hheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHH
Confidence 789999999999999999999987532100 00011122345678899999998877777654 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+++|++++|.+ |++++.|+++
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~ 231 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL-AKKYADRIVGLKA-GEIVFDGAPS 231 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEEEC-CEEEecCCHH
Confidence 99999999999999999999999999999999999998764 8999999999975 4578999999986 5788999887
Q ss_pred hH
Q 001270 730 KV 731 (1111)
Q Consensus 730 ~l 731 (1111)
++
T Consensus 232 ~~ 233 (243)
T TIGR02315 232 EL 233 (243)
T ss_pred Hh
Confidence 65
No 70
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2e-41 Score=358.78 Aligned_cols=207 Identities=29% Similarity=0.406 Sum_probs=178.7
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGF 580 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 580 (1111)
|+++||+++|+ ++.+|+|+||++++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++.. ..+++.++|
T Consensus 1 l~~~~l~~~~~--~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYG--KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGA 76 (208)
T ss_pred CEEEEEEEEEC--CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEE
Confidence 46899999994 4679999999999999999999999999999999999765 689999999986532 234678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
|+|++.+++.+||+||+.+....+. . ...+++++++.+||.+..++.+++ |||||||||+|||||+.+
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKVKG-----FSLGMKQRLGIALALLGN 144 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhHhh-----CCHHHHHHHHHHHHHhcC
Confidence 9999999999999999988754321 1 123568899999998888877765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|++++|.+ |++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSE-IQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999988789999999999875 4578999999986 4676654
No 71
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-41 Score=362.19 Aligned_cols=215 Identities=23% Similarity=0.336 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEcCCc--ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc------
Q 001270 501 EVSFKDLTLTLKGKN--KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH------ 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~--k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~------ 572 (1111)
.|+++||++.|+.+. +.+|+++||+|++||+++|+||||||||||+++|+|+.. +++|+|+++|+++...
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCHHHHH
Confidence 378999999996432 579999999999999999999999999999999999765 6899999999876321
Q ss_pred cc-cccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 001270 573 SY-KKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 573 ~~-r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
.. ++.++|++|++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+.+ |||||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrl 154 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPSE-----LSGGERQRV 154 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHH
Confidence 12 257999999999999999999999865422 122223345678999999998877777654 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +|+|||++||+++. + ..+|++++|.+ |++++.|+.
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~-~~~~~~~~l~~-G~i~~~~~~ 229 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-A-KRMSRQLEMRD-GRLTAELSL 229 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhhCEEEEEEC-CEEEEEecc
Confidence 999999999999999999999999999999999999875 58999999999975 3 44689999976 578877763
No 72
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-41 Score=365.25 Aligned_cols=217 Identities=28% Similarity=0.445 Sum_probs=184.8
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccccE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~I 578 (1111)
|+++||+++|++. +.+|+|+||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ..+++.+
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i 77 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKI 77 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcce
Confidence 4679999999532 579999999999999999999999999999999999765 688999999987532 2346789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc--cccccccCccCCCCCHHHHHHHHHHHH
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT--VRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~--~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
+|++|++.+++.+||+||+.+..... .....+..+.++++++.+||.+ ..++.+.+ |||||||||+||||
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-----LS~G~~qrv~lara 149 (242)
T cd03295 78 GYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYPHE-----LSGGQQQRVGVARA 149 (242)
T ss_pred EEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhh-----CCHHHHHHHHHHHH
Confidence 99999999999999999998865432 1222333456789999999985 66766654 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 223 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE-AFRLADRIAIMKN-GEIVQVGTPDEI 223 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEecCHHHH
Confidence 99999999999999999999999999999999765 8999999999874 4588999999987 578899988765
No 73
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.3e-41 Score=370.15 Aligned_cols=219 Identities=25% Similarity=0.435 Sum_probs=186.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------ccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------HSY 574 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~~ 574 (1111)
.|+++||++.|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ...
T Consensus 7 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 7 LVDMRGVSFTRG--NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred eEEEeCeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccChhhHHHH
Confidence 488999999994 5679999999999999999999999999999999999765 588999999987532 123
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 001270 575 KKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVG 654 (1111)
Q Consensus 575 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIA 654 (1111)
++.|+|++|++.+++.+||.||+.+...... ..........+.++++.+||.+..++.+++ |||||||||+||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~la 155 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPSE-----LSGGMARRAALA 155 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHH
Confidence 5679999999999999999999988643211 122233344678899999999888887765 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 655 LEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 655 rALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +.+.+|++++|.+ |++++.|+++++.
T Consensus 156 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~~ 232 (269)
T PRK11831 156 RAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPE-VLSIADHAYIVAD-KKIVAHGSAQALQ 232 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhhCEEEEEEC-CEEEEeCCHHHHh
Confidence 9999999999999999999999999999999998765 8999999999875 5678999999976 5788999987653
No 74
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.3e-41 Score=358.26 Aligned_cols=206 Identities=29% Similarity=0.420 Sum_probs=177.0
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------cccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------HSYK 575 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~~r 575 (1111)
|+++|++++|+ +++.+|+|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ..++
T Consensus 2 l~~~~l~~~~~-~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 2 IEFHNVSKAYP-GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred EEEEeeeEEeC-CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHH
Confidence 67899999994 23579999999999999999999999999999999999765 579999999987532 1246
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
+.++|++|++.+++.+||.||+.+..... ........+.++++++.+||.+..++.+.+ |||||||||+|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~ 150 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPEQ-----LSGGEQQRVAIAR 150 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHH
Confidence 78999999999998999999999875432 122223345678899999998877777655 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +...+|++++|.+|
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~i~~l~~G 213 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSL-VDRVAHRVIILDDG 213 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEEecCC
Confidence 9999999999999999999999999999999987779999999999874 55789999999764
No 75
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-41 Score=370.52 Aligned_cols=218 Identities=25% Similarity=0.357 Sum_probs=185.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 577 (1111)
.|+++||++.|+. .+.+|+||||+|++||+++|+||||||||||+++|+|++. +++|+|.++|+++.. ..+++.
T Consensus 4 ~l~~~~l~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~ 80 (274)
T PRK13647 4 IIEVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENEKWVRSK 80 (274)
T ss_pred eEEEEEEEEEeCC-CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHhh
Confidence 3789999999952 3569999999999999999999999999999999999765 589999999987642 234678
Q ss_pred EEEEccCCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 578 IGFVPQDDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 578 IgyV~Qd~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
||||+|++. .+..+||.||+.|+.... .....+...+++++++.+||.+..++.+.+ |||||||||+||||
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgG~~qrv~lara 152 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPYH-----LSYGQKKRVAIAGV 152 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChhh-----CCHHHHHHHHHHHH
Confidence 999999973 344689999999875421 223333345678999999998888887765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~ 225 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDL-AAEWADQVIVLKE-GRVLAEGDKSLL 225 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHh
Confidence 999999999999999999999999999999998779999999999875 4578999999986 578899998654
No 76
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-41 Score=372.48 Aligned_cols=219 Identities=21% Similarity=0.359 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEcCC-cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccc
Q 001270 501 EVSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~-~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 576 (1111)
.|+++||+++|++. .+.+|+||||+|++||++||+|+||||||||+++|+|++. +.+|+|.++|+++.. ..+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENVWDIRH 81 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHHh
Confidence 47899999999632 3569999999999999999999999999999999999775 689999999988632 24567
Q ss_pred cEEEEccCCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 577 IIGFVPQDDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 577 ~IgyV~Qd~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
.+|||+|++. +++.+||+|||.|+.... .....+..++++++++.+||.+..++.+.+ |||||||||+|||
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qrv~lAr 153 (279)
T PRK13650 82 KIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPAR-----LSGGQKQRVAIAG 153 (279)
T ss_pred hceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHHHH
Confidence 8999999973 666789999999875432 233444445688999999999888887765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||+++. + ..+|++++|.+ |+++..|+++++.
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~-G~i~~~g~~~~~~ 228 (279)
T PRK13650 154 AVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKN-GQVESTSTPRELF 228 (279)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEEECCHHHHH
Confidence 999999999999999999999999999999999875 9999999999875 3 57999999976 5788999988764
No 77
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.6e-41 Score=357.67 Aligned_cols=206 Identities=24% Similarity=0.394 Sum_probs=176.6
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------cccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------HSYK 575 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~~r 575 (1111)
|+++|+++.|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|+++.. ..++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~ 77 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLR 77 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHH
Confidence 4679999999532 579999999999999999999999999999999999765 689999999987532 1246
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
+.++||+|++.+++.+||+||+.+....+. ....+..+.++++++.+||.+..++.+++ ||||||||++|||
T Consensus 78 ~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lar 149 (214)
T cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALPAE-----LSGGEQQRVAIAR 149 (214)
T ss_pred HheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCChhh-----cCHHHHHHHHHHH
Confidence 789999999999999999999998754321 22233345678899999998877777654 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|++++|.+|
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~-~~~~~d~i~~l~~G 212 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL-VDTTRHRVIALERG 212 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999987779999999999875 45689999999865
No 78
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-41 Score=377.32 Aligned_cols=230 Identities=20% Similarity=0.348 Sum_probs=189.5
Q ss_pred EEEEEeEEEEEcCC---cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------
Q 001270 501 EVSFKDLTLTLKGK---NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------ 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~---~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------ 571 (1111)
.|+++||+++|..+ .+.+|+||||+|++||++||+|+||||||||+++|+|++. +.+|+|+++|.++..
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEccccccccc
Confidence 58999999999642 2469999999999999999999999999999999999875 689999999977521
Q ss_pred -------------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccc
Q 001270 572 -------------HSYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLV 635 (1111)
Q Consensus 572 -------------~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~v 635 (1111)
..+++.||||+|++ .+++ .||+||+.|+.... .....+...+++++++.+||. +..++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 23567899999987 4664 59999998875321 123333445678999999996 5666665
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEE
Q 001270 636 GTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVL 715 (1111)
Q Consensus 636 g~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vil 715 (1111)
. .|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++. +.+.+|++++
T Consensus 175 ~-----~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~-~~~~adri~v 248 (320)
T PRK13631 175 F-----GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEH-VLEVADEVIV 248 (320)
T ss_pred c-----cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEE
Confidence 4 499999999999999999999999999999999999999999999998789999999999874 4578999999
Q ss_pred EeCCcEEEEecCHhhHH---HHHHhCCCCCC
Q 001270 716 LAKGGLTVYHGSVKKVE---EYFAGLGINVP 743 (1111)
Q Consensus 716 L~~GG~iv~~G~~~~l~---~~f~~~g~~~p 743 (1111)
|.+ |++++.|+++++. +.+...++..|
T Consensus 249 l~~-G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 249 MDK-GKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEC-CEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 987 5789999998763 23444454433
No 79
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=4e-41 Score=385.41 Aligned_cols=207 Identities=24% Similarity=0.321 Sum_probs=182.2
Q ss_pred CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccc----cccEEEEccCCC
Q 001270 514 KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSY----KKIIGFVPQDDI 586 (1111)
Q Consensus 514 ~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~----r~~IgyV~Qd~~ 586 (1111)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|+.. +++|+|+++|+++.. ..+ ++.||||||++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 45679999999999999999999999999999999999875 689999999998642 223 678999999999
Q ss_pred CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001270 587 VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLL 666 (1111)
Q Consensus 587 l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLL 666 (1111)
+++++||+||+.|+.... ...+.+..+++.++++.+||++..++++.+ |||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~-----LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPDE-----LSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986542 233445556789999999999888888765 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 667 DEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 667 DEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||||++||+.++..+.+.|+++.++ |+|||++|||+++ +.+++|++++|.+ |+++..|+++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~e-a~~~~drI~vl~~-G~iv~~g~~~ei~ 218 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDE-AIRIGDRIVIMKA-GEIVQVGTPDEIL 218 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeC-CEEEeeCCHHHHH
Confidence 9999999999999999999999754 8999999999986 4689999999976 5889999988764
No 80
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=6.2e-41 Score=359.87 Aligned_cols=219 Identities=36% Similarity=0.598 Sum_probs=183.3
Q ss_pred EEEEeEEEEEcCC--cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC-CCceeEEEECCeeCCcccccccE
Q 001270 502 VSFKDLTLTLKGK--NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA-CKATGLILINGKNEPIHSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~--~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~-~~~sG~I~inG~~~~~~~~r~~I 578 (1111)
+.++|++++|++. .+.+|+|+||+|++||+++|+||||||||||+++|+|++.+ .+.+|+|.++|+++....+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 5789999999754 37899999999999999999999999999999999997641 14789999999886544567889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHH-HHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIER-VIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~-vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
+|++|++.+++.+||+||+.+..................+++ .++.+++.+..++.+.+ |||||+|||+|||+|
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral 158 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKG-----ISGGERRRVSIAVQL 158 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccC-----cCHHHHHHHHHHHHH
Confidence 999999999999999999998754332211122222234455 88999998777776654 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
+.+|++|||||||+|||+.++..+.+.|+++.++|.|||++||++...+.+.+|++++|.+ |++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999998877999999999985446789999999987 5777654
No 81
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-41 Score=372.83 Aligned_cols=219 Identities=24% Similarity=0.379 Sum_probs=184.9
Q ss_pred EEEEEeEEEEEcCCc---ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------
Q 001270 501 EVSFKDLTLTLKGKN---KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------ 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~---k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------ 571 (1111)
.|+++||+++|+++. +.+|+||||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~~~~ 79 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTKDKY 79 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccch
Confidence 478999999995322 469999999999999999999999999999999999765 688999999987632
Q ss_pred -ccccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHH
Q 001270 572 -HSYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 572 -~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQ 647 (1111)
..+++.||||||++ .+++ .||.|||.|+.... .....+..++++++++.+||. +..++.+.+ |||||
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq 150 (286)
T PRK13646 80 IRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQ-----MSGGQ 150 (286)
T ss_pred HHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCccc-----CCHHH
Confidence 23567899999986 4554 59999999875422 223334445688999999997 566766654 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
||||+|||||+.+|+||||||||+|||+.++..+.++|+++++ .|+|||++||+++. +.+++|++++|.+ |++++.|
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~-~~~~~dri~~l~~-G~i~~~g 228 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNE-VARYADEVIVMKE-GSIVSQT 228 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEEC
Confidence 9999999999999999999999999999999999999999975 49999999999875 4578999999986 5788999
Q ss_pred CHhhHH
Q 001270 727 SVKKVE 732 (1111)
Q Consensus 727 ~~~~l~ 732 (1111)
+++++.
T Consensus 229 ~~~~~~ 234 (286)
T PRK13646 229 SPKELF 234 (286)
T ss_pred CHHHHH
Confidence 988764
No 82
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-41 Score=362.39 Aligned_cols=217 Identities=26% Similarity=0.405 Sum_probs=184.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---------c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---------I 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---------~ 571 (1111)
.|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|+++. .
T Consensus 2 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T PRK11124 2 SIQLNGINCFYG--AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred EEEEEeeEEEEC--CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccccchhhH
Confidence 578999999994 4679999999999999999999999999999999999764 68899999998752 1
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHH-HhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 001270 572 HSYKKIIGFVPQDDIVHGNLTVEENLWFHA-RCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 572 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a-~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQR 650 (1111)
..+++.|+|++|++.+++.+||.||+.+.. ... .....+....+.++++.+||.+..++.+.+ ||||||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qr 149 (242)
T PRK11124 78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPLH-----LSGGQQQR 149 (242)
T ss_pred HHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHH
Confidence 134678999999999999999999997532 211 112223345678899999998887877755 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|++++|.+ |++++.|++++
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~~d~i~~l~~-g~i~~~~~~~~ 227 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV-ARKTASRVVYMEN-GHIVEQGDASC 227 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEEeCCHHH
Confidence 999999999999999999999999999999999999988779999999999975 4578999999986 57889998765
Q ss_pred H
Q 001270 731 V 731 (1111)
Q Consensus 731 l 731 (1111)
+
T Consensus 228 ~ 228 (242)
T PRK11124 228 F 228 (242)
T ss_pred h
Confidence 4
No 83
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-41 Score=362.99 Aligned_cols=219 Identities=24% Similarity=0.444 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 576 (1111)
.|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|.++.. ...++
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 78 (241)
T PRK10895 3 TLTAKNLAKAYK--GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLHARARR 78 (241)
T ss_pred eEEEeCcEEEeC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHHh
Confidence 478999999994 4679999999999999999999999999999999999764 688999999987532 12356
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.++|++|++.+++.+||+||+.+...... .....+....++++++.+|+.+..++.+++ |||||||||+||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lara 151 (241)
T PRK10895 79 GIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMGQS-----LSGGERRRVEIARA 151 (241)
T ss_pred CeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcchhh-----CCHHHHHHHHHHHH
Confidence 79999999999988999999987643221 122233345678899999998777776654 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|++++|.+ |++++.|+++++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~~~~ 225 (241)
T PRK10895 152 LAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRE-TLAVCERAYIVSQ-GHLIAHGTPTEIL 225 (241)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHH-HHHhcCEEEEEeC-CeEEeeCCHHHHh
Confidence 999999999999999999999999999999988779999999999864 5688999999986 5788999987653
No 84
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-41 Score=372.29 Aligned_cols=219 Identities=23% Similarity=0.345 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEcCC---cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------
Q 001270 501 EVSFKDLTLTLKGK---NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------ 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~---~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------ 571 (1111)
.|+++||++.|+++ .+.+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETGNKN 79 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccch
Confidence 47899999999532 2569999999999999999999999999999999999765 689999999987531
Q ss_pred -ccccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHH
Q 001270 572 -HSYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 572 -~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQ 647 (1111)
...++.|||++|++ .++ .+||+||+.++.... .....+..++++++++.+||. +..++.+++ |||||
T Consensus 80 ~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq 150 (287)
T PRK13641 80 LKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPFE-----LSGGQ 150 (287)
T ss_pred HHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCccc-----CCHHH
Confidence 23456899999997 345 579999998865422 122334445688999999997 677777765 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|++ |++++.|+
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~-~~~~~d~v~~l~~-G~i~~~g~ 228 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD-VAEYADDVLVLEH-GKLIKHAS 228 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCC
Confidence 999999999999999999999999999999999999999998779999999999975 4688999999986 57889999
Q ss_pred HhhHH
Q 001270 728 VKKVE 732 (1111)
Q Consensus 728 ~~~l~ 732 (1111)
++++.
T Consensus 229 ~~~~~ 233 (287)
T PRK13641 229 PKEIF 233 (287)
T ss_pred HHHHh
Confidence 88764
No 85
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.4e-41 Score=414.97 Aligned_cols=225 Identities=27% Similarity=0.449 Sum_probs=193.0
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC---Ccccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE---PIHSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~r~ 576 (1111)
-+|+++||+|+|...+..+|+|+|++|++||.+||+|+||||||||+|+|+|++. |.+|+|++||.++ +...+|+
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEeHHhcCHHHHHh
Confidence 4799999999998766689999999999999999999999999999999999775 6899999999985 4567899
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
+||||+||+.+|. -|++||+.++......+.+..+.+.+.+++.+..+- .-.++.+|+ ++.+||||||||++||||
T Consensus 548 ~ig~V~Q~~~Lf~-gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP--~gy~t~v~E-~G~~LSGGQrQrlalARa 623 (709)
T COG2274 548 QVGYVLQDPFLFS-GSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP--MGYDTPVGE-GGANLSGGQRQRLALARA 623 (709)
T ss_pred heeEEcccchhhc-CcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcc--ccccccccc-CCCCCCHHHHHHHHHHHH
Confidence 9999999999985 599999999865443334444445555666666552 235677876 567899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEY 734 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~ 734 (1111)
|+++|+|||||||||+||+.+++.|.+.|.++. +|+|+|+++|+++ ..+.+|++++|++ |+++.+|+.+++.+.
T Consensus 624 Ll~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~~-Gkiv~~gs~~ell~~ 697 (709)
T COG2274 624 LLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLDQ-GKIVEQGSHEELLAQ 697 (709)
T ss_pred hccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEccC-CceeccCCHHHHHHh
Confidence 999999999999999999999999999999875 5799999999987 4589999999976 589999999998754
No 86
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=9e-41 Score=379.00 Aligned_cols=222 Identities=23% Similarity=0.336 Sum_probs=187.9
Q ss_pred EEEEEeEEEEEcCC-----------cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC
Q 001270 501 EVSFKDLTLTLKGK-----------NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE 569 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~-----------~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~ 569 (1111)
.|+++||+++|..+ ...+|+||||+|++||++||+|+||||||||+++|+|++. +.+|+|+++|+++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 48999999999531 2579999999999999999999999999999999999875 5799999999986
Q ss_pred Cc------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccC
Q 001270 570 PI------HSYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEK 640 (1111)
Q Consensus 570 ~~------~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~ 640 (1111)
.. ..+++.|+||+|++ .+++.+||.|||.+...... ....+.+..++++++++.+||. +..++++.+
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~--- 161 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE--- 161 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCCccc---
Confidence 32 12467899999997 58889999999998654321 1133444556788999999994 456776654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 641 RGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 641 rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
|||||||||+|||||+.+|+||||||||+|||+.++.+|+++|+++.++ |.|||+||||++. +.+++|++++|.+
T Consensus 162 --LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~-~~~~~dri~vl~~- 237 (331)
T PRK15079 162 --FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAV-VKHISDRVLVMYL- 237 (331)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC-
Confidence 9999999999999999999999999999999999999999999999765 9999999999975 4578999999986
Q ss_pred cEEEEecCHhhHH
Q 001270 720 GLTVYHGSVKKVE 732 (1111)
Q Consensus 720 G~iv~~G~~~~l~ 732 (1111)
|++++.|+.+++.
T Consensus 238 G~ive~g~~~~i~ 250 (331)
T PRK15079 238 GHAVELGTYDEVY 250 (331)
T ss_pred CEEEEEcCHHHHH
Confidence 5889999987764
No 87
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.8e-41 Score=357.14 Aligned_cols=202 Identities=29% Similarity=0.432 Sum_probs=172.4
Q ss_pred EEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEcc
Q 001270 504 FKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQ 583 (1111)
Q Consensus 504 ~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Q 583 (1111)
++||+++|+++ +.+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++.....++.|||++|
T Consensus 2 ~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 2 IENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred cccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEec
Confidence 57899999431 579999999999999999999999999999999999765 689999999987643445678999999
Q ss_pred CCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCC
Q 001270 584 DDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPS 662 (1111)
Q Consensus 584 d~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~ 662 (1111)
++. .+..+||+||+.+..... . . ...+++++++.+||.+..++.+.+ |||||||||+|||||+.+|+
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHPLS-----LSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCchh-----CCHHHHHHHHHHHHHHhCCC
Confidence 974 234679999998865321 1 1 113578899999999888887765 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEE
Q 001270 663 LLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLT 722 (1111)
Q Consensus 663 lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~i 722 (1111)
+|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+++|++++|.+| ++
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~G-~i 204 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF-LAKVCDRVLLLANG-AI 204 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECC-EE
Confidence 999999999999999999999999998789999999999975 45789999999875 54
No 88
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.2e-40 Score=362.24 Aligned_cols=217 Identities=24% Similarity=0.364 Sum_probs=182.2
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC---ceeEEEECCeeCCc-----cc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACK---ATGLILINGKNEPI-----HS 573 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~---~sG~I~inG~~~~~-----~~ 573 (1111)
|+++||+++|+ ++.+|+|+||+|++||+++|+|+|||||||||++|+|+..+.+ .+|+|.++|+++.. ..
T Consensus 2 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYG--EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEEC--CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 67899999994 4579999999999999999999999999999999999875321 18999999987632 23
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ----TVRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~----~~~d~~vg~~~~rgLSGGQrQ 649 (1111)
.++.|+|+||++.+++ +||+||+.+....+. .....+..+.++++++.+||. +..++.++ .|||||||
T Consensus 80 ~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSgG~~q 151 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSAL-----GLSGGQQQ 151 (247)
T ss_pred HHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcc-----cCCHHHHH
Confidence 4678999999998888 999999998754321 112233345678899999997 55666555 49999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +.|||++||+++. +.+.+|++++|.+ |++++.|+++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~ 228 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQ-AARISDRTAFFYD-GELVEYGPTE 228 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHH-HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999999999999999876 4899999999974 4578999999987 5788999887
Q ss_pred hH
Q 001270 730 KV 731 (1111)
Q Consensus 730 ~l 731 (1111)
++
T Consensus 229 ~~ 230 (247)
T TIGR00972 229 QI 230 (247)
T ss_pred HH
Confidence 65
No 89
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.3e-40 Score=364.08 Aligned_cols=218 Identities=25% Similarity=0.385 Sum_probs=184.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---------
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--------- 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--------- 571 (1111)
.|+++||++.|+ ++.+|+||||+|++||+++|+|+||||||||+++|+|+.. +++|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 5 KLNVIDLHKRYG--EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred cEEEeeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccccccccc
Confidence 378999999994 4679999999999999999999999999999999999765 578999999987531
Q ss_pred -------ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccc-cccccCccCCCC
Q 001270 572 -------HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVR-DSLVGTVEKRGI 643 (1111)
Q Consensus 572 -------~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~-d~~vg~~~~rgL 643 (1111)
..+++.++||+|++.+++.+||+||+.++..... .....+...++.++++.+||.+.. ++.+. .|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGKYPV-----HL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhCCcc-----cC
Confidence 1345789999999999999999999987542111 122333345678899999998753 55554 49
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEE
Q 001270 644 SGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTV 723 (1111)
Q Consensus 644 SGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv 723 (1111)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +...+|++++|.+ |+++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~ 231 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQ-GKIE 231 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999998779999999999875 4568999999987 5788
Q ss_pred EecCHhhH
Q 001270 724 YHGSVKKV 731 (1111)
Q Consensus 724 ~~G~~~~l 731 (1111)
+.|+.+++
T Consensus 232 ~~~~~~~~ 239 (257)
T PRK10619 232 EEGAPEQL 239 (257)
T ss_pred EeCCHHHh
Confidence 99988765
No 90
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.6e-40 Score=358.81 Aligned_cols=216 Identities=30% Similarity=0.478 Sum_probs=183.8
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 579 (1111)
|+++|++++|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|.++.. ...++.++
T Consensus 2 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~~~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYG--ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRAALARLG 77 (236)
T ss_pred EEEEeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChhhhhhEE
Confidence 67899999994 4679999999999999999999999999999999999765 689999999987532 12335799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|++|++.+++.+||+||+.+....+ .....+..+.++++++.+||.+..++.+++ |||||||||+|||||+.
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~laral~~ 149 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVRE-----LNGGHRRRVEIARALLH 149 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHhc
Confidence 9999998888999999998765432 122223344678899999998877877765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+|+||||||||+|||+.++..+.+.|+++++ +|.|||++||+++.. ..+|++++|.+ |++++.|+++++.
T Consensus 150 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~--~~~d~i~~l~~-G~i~~~~~~~~~~ 220 (236)
T TIGR03864 150 RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEI--EADDRLVVLHR-GRVLADGAAAELR 220 (236)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH--hhCCEEEEEeC-CeEEEeCCHHHHH
Confidence 9999999999999999999999999999875 589999999999754 45999999986 5788999887664
No 91
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-40 Score=364.76 Aligned_cols=212 Identities=27% Similarity=0.371 Sum_probs=181.9
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 581 (1111)
|+++||++.|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ..+.+||+
T Consensus 2 l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~--~~~~~~~v 75 (255)
T PRK11248 2 LQISHLYADYG--GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG--PGAERGVV 75 (255)
T ss_pred EEEEEEEEEeC--CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC--CCCcEEEE
Confidence 67899999994 4679999999999999999999999999999999999765 689999999987642 33569999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 001270 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEP 661 (1111)
Q Consensus 582 ~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P 661 (1111)
+|++.+++.+||.||+.+....+ .....+..++++++++.+||.+..++.+.+ |||||||||+|||||+.+|
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQ-----LSGGQRQRVGIARALAANP 147 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChhh-----CCHHHHHHHHHHHHHhcCC
Confidence 99999998899999998865422 122333345688999999998877776655 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeC-CcEEEEecCH
Q 001270 662 SLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAK-GGLTVYHGSV 728 (1111)
Q Consensus 662 ~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~-GG~iv~~G~~ 728 (1111)
++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++. +.+.+|++++|.+ +|+++..++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~-~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEE-AVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999854 58999999999975 5688999999985 5788877764
No 92
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5e-41 Score=356.11 Aligned_cols=205 Identities=31% Similarity=0.509 Sum_probs=173.3
Q ss_pred EEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccccEEE
Q 001270 504 FKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKIIGF 580 (1111)
Q Consensus 504 ~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~Igy 580 (1111)
++||+++|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ..+++.|+|
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceE
Confidence 689999995322679999999999999999999999999999999999765 589999999987532 235678999
Q ss_pred EccCCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 581 VPQDDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 581 V~Qd~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
++|++. .++.+||+||+.+..... .....+....++++++.+||.+..++.+++ |||||||||+|||||+.
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~laral~~ 151 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAM 151 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHHHHHHHhc
Confidence 999975 356789999998865422 112223334578899999998877777765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|++++|.+|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~G 210 (211)
T cd03225 152 DPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDL-LLELADRVIVLEDG 210 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEeCC
Confidence 999999999999999999999999999998779999999999874 45779999999865
No 93
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=7.2e-41 Score=355.11 Aligned_cols=206 Identities=26% Similarity=0.450 Sum_probs=176.7
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-----ccccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-----HSYKK 576 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----~~~r~ 576 (1111)
|+++||+++|+ .+.+|+++||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|++... ..+++
T Consensus 1 l~~~~l~~~~~--~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (213)
T cd03262 1 IEIKNLHKSFG--DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQ 76 (213)
T ss_pred CEEEEEEEEEC--CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHh
Confidence 46899999994 4679999999999999999999999999999999999765 589999999987631 23567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.++|++|++.+++.+||+||+.++..... .....+..+.++++++.+|+.+..++.+.+ |||||||||+||||
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~a 149 (213)
T cd03262 77 KVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPAQ-----LSGGQQQRVAIARA 149 (213)
T ss_pred cceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCccc-----cCHHHHHHHHHHHH
Confidence 89999999999989999999988643111 122223345678899999998877877755 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|++++|++|
T Consensus 150 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~-~~~~~d~i~~l~~g 211 (213)
T cd03262 150 LAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF-AREVADRVIFMDDG 211 (213)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEeCC
Confidence 999999999999999999999999999999998779999999999875 45789999999875
No 94
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=9.9e-41 Score=356.31 Aligned_cols=208 Identities=25% Similarity=0.390 Sum_probs=175.1
Q ss_pred EEEEeEEEEEcCC--cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cc---
Q 001270 502 VSFKDLTLTLKGK--NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HS--- 573 (1111)
Q Consensus 502 L~~~nLs~~y~~~--~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~--- 573 (1111)
|+++||+++|+++ .+.+|+++||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++.. ..
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHhHHHH
Confidence 5789999999532 2579999999999999999999999999999999999765 589999999987532 11
Q ss_pred cc-ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 001270 574 YK-KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 574 ~r-~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
++ +.|+||+|++.+++.+||+||+.+....+. ....+..+.+.++++.+||.+..++.+++ |||||||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~ 151 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRPSE-----LSGGERQRVA 151 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHH
Confidence 23 579999999999989999999988654321 12223334678899999998877777655 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEE
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLT 722 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~i 722 (1111)
|||+|+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..+|++++|.+| ++
T Consensus 152 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~-~~~d~v~~l~~G-~i 219 (221)
T TIGR02211 152 IARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-A-KKLDRVLEMKDG-QL 219 (221)
T ss_pred HHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-hhcCEEEEEeCC-Ee
Confidence 999999999999999999999999999999999999764 8999999999874 3 458999999875 54
No 95
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.5e-40 Score=359.53 Aligned_cols=223 Identities=26% Similarity=0.358 Sum_probs=182.2
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cc-cccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HS-YKKI 577 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~-~r~~ 577 (1111)
|+++||+++|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+....+++|+|.++|+++.. .. .+..
T Consensus 1 l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVE--DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEEC--CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 46899999994 467999999999999999999999999999999999974223689999999987532 12 2345
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccc----cchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSA----HLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~----~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
++||+|++.+++.+|++||+.+........ .....+..++++++++.+||. ...++.+. ..|||||||||+
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~ 154 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNE 154 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHH
Confidence 999999999999999999998865422100 012222335678899999997 45566553 139999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCeEEEEeCCcEEEEecCHhhH
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRM-FDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~-~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +... +|++++|.+ |++++.|+++++
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~ 232 (243)
T TIGR01978 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL-LNYIKPDYVHVLLD-GRIVKSGDVELA 232 (243)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHH-HHhhcCCeEEEEeC-CEEEEecCHHHh
Confidence 9999999999999999999999999999999999998788999999999875 4456 799999976 578899998755
Q ss_pred H
Q 001270 732 E 732 (1111)
Q Consensus 732 ~ 732 (1111)
.
T Consensus 233 ~ 233 (243)
T TIGR01978 233 K 233 (243)
T ss_pred c
Confidence 4
No 96
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-40 Score=368.30 Aligned_cols=219 Identities=21% Similarity=0.354 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 577 (1111)
.|+++||++.|+...+.+|+||||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ..+++.
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHhhh
Confidence 378999999996434679999999999999999999999999999999999865 689999999998642 235678
Q ss_pred EEEEccCCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 578 IGFVPQDDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 578 IgyV~Qd~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
|||++|++. ++..+||.|||.++.... .....+..++++++++.+||.+..++.+++ |||||||||+||||
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv~lara 154 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPHR-----LSGGQKQRVAIAGV 154 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHHHHH
Confidence 999999973 666789999998875432 123334445688999999999888887765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||+++.. ..+|++++|.+ |++++.|+.+++.
T Consensus 155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~--~~~d~i~~l~~-G~i~~~g~~~~~~ 228 (279)
T PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEA--AQADRVIVMNK-GEILEEGTPEEIF 228 (279)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHH--HcCCEEEEEEC-CEEEEECCHHHHh
Confidence 99999999999999999999999999999999876 89999999999753 45999999986 5788999988764
No 97
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=361.06 Aligned_cols=221 Identities=25% Similarity=0.361 Sum_probs=184.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCC---cccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEP---IHSY 574 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~---~~~~ 574 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+..+. +++|+|.++|+++. ...+
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFG--QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEEC--CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 478999999994 457999999999999999999999999999999999987532 47999999998753 2345
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHHHH
Q 001270 575 KKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 575 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQrQR 650 (1111)
++.|||++|++.+++.+||+||+.++...... .....+..+.++++++.+||.+ ..++.+. .||||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSgG~~qr 154 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPAG-----KLSGGQQQR 154 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcc-----cCCHHHHHH
Confidence 67899999999888899999999987542210 0122333456788999999854 3455554 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
|+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ |+|||++||+++. +.+.+|++++|.+ |++++.|++++
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~ 231 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQ-AARISDYVAFLYK-GQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhcCEEEEEEC-CeEEEECCHHH
Confidence 9999999999999999999999999999999999999864 8999999999874 4578999999986 57889999877
Q ss_pred HH
Q 001270 731 VE 732 (1111)
Q Consensus 731 l~ 732 (1111)
+.
T Consensus 232 ~~ 233 (250)
T PRK14247 232 VF 233 (250)
T ss_pred HH
Confidence 63
No 98
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-40 Score=366.70 Aligned_cols=218 Identities=25% Similarity=0.370 Sum_probs=182.6
Q ss_pred EEEEEeEEEEEcCCc---ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------
Q 001270 501 EVSFKDLTLTLKGKN---KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------ 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~---k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------ 571 (1111)
.|+++||+++|++.. +.+|+||||+|++||+++|+|||||||||||++|+|++. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~ 79 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSKNKD 79 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccC
Confidence 478999999996322 469999999999999999999999999999999999765 689999999987532
Q ss_pred -ccccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHH
Q 001270 572 -HSYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 572 -~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQ 647 (1111)
..+++.|+|++|++ .+++ .||+||+.+..... .....+..+.++++++.+||. ...++.+++ |||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~ 150 (280)
T PRK13649 80 IKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPFE-----LSGGQ 150 (280)
T ss_pred HHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCccc-----CCHHH
Confidence 23567899999996 4554 69999998865322 122233344678899999997 456666654 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|++++|.+ |++++.|+
T Consensus 151 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~~~g~ 228 (280)
T PRK13649 151 MRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDD-VANYADFVYVLEK-GKLVLSGK 228 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH-HHHhCCEEEEEEC-CEEEEeCC
Confidence 999999999999999999999999999999999999999998779999999999874 4578999999986 57888999
Q ss_pred HhhH
Q 001270 728 VKKV 731 (1111)
Q Consensus 728 ~~~l 731 (1111)
++++
T Consensus 229 ~~~~ 232 (280)
T PRK13649 229 PKDI 232 (280)
T ss_pred HHHH
Confidence 8876
No 99
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.9e-42 Score=354.72 Aligned_cols=221 Identities=24% Similarity=0.444 Sum_probs=197.0
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc----ccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH----SYK 575 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~----~~r 575 (1111)
..|..+||.++| +++.++++||+++++||+++|+|||||||||.+.++.|+.. +++|+|.+||.+++.. ..|
T Consensus 3 ~~L~a~~l~K~y--~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RAr 78 (243)
T COG1137 3 STLVAENLAKSY--KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRAR 78 (243)
T ss_pred cEEEehhhhHhh--CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhh
Confidence 357889999999 56789999999999999999999999999999999999875 6899999999987532 245
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
..|||+||++..|..|||+|||+.....+.. ...+.+++.+++++|+.++|.+.++++..+ ||||||+|+.|||
T Consensus 79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~s-----LSGGERRR~EIAR 152 (243)
T COG1137 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAYS-----LSGGERRRVEIAR 152 (243)
T ss_pred cCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcccc-----cccchHHHHHHHH
Confidence 6799999999999999999999988776532 223345556788999999999999987765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||+.+|+.++||||++|+||.+..+|.++++.|+..|..|+++-|+.++. ..++||.+++.+ |+++++|+++++.
T Consensus 153 aLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREt-L~i~dRaYIi~~-G~vla~G~p~ei~ 227 (243)
T COG1137 153 ALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRET-LDICDRAYIISD-GKVLAEGSPEEIV 227 (243)
T ss_pred HHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHH-HhhhheEEEEec-CeEEecCCHHHHh
Confidence 99999999999999999999999999999999999999999999999865 599999999987 5789999999875
No 100
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=359.25 Aligned_cols=216 Identities=27% Similarity=0.417 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc----cccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH----SYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~----~~r~ 576 (1111)
.|+++||++.|+ .+.+|++|||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|++.... ..++
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~ 80 (237)
T PRK11614 5 MLSFDKVSAHYG--KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDITDWQTAKIMRE 80 (237)
T ss_pred EEEEEeEEEeeC--CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecCCCCHHHHHHh
Confidence 488999999994 4679999999999999999999999999999999999765 6899999999875321 2456
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHc-CCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTL-GLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~L-GL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
.++|++|++.+++.+||.||+.++.... . ..+....++++++.+ ++.+..++.+.+ |||||||||+|||
T Consensus 81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~-----LS~G~~qrl~la~ 150 (237)
T PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFA---E--RDQFQERIKWVYELFPRLHERRIQRAGT-----MSGGEQQMLAIGR 150 (237)
T ss_pred CEEEeccCcccCCCCcHHHHHHHhhhcc---C--hhHHHHHHHHHHHHHHHHHHHHhCchhh-----CCHHHHHHHHHHH
Confidence 7999999999998899999998864321 1 111223466777877 576666665544 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|++++|.+ |++++.|+++++.
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~~ 225 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQ-ALKLADRGYVLEN-GHVVLEDTGDALL 225 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH-HHhhCCEEEEEeC-CEEEeeCCHHHHh
Confidence 9999999999999999999999999999999998789999999999874 5689999999987 5789999988763
No 101
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-41 Score=354.35 Aligned_cols=209 Identities=29% Similarity=0.460 Sum_probs=177.9
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 579 (1111)
|+++|+++.|+ ++.+|+|+||+|++| +++|+||||||||||+++|+|++. +.+|+|.++|+++.. ..+++.++
T Consensus 1 i~~~~~~~~~~--~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYG--KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIG 75 (211)
T ss_pred CEEEEEEEEEC--CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheE
Confidence 46899999994 457999999999999 999999999999999999999765 689999999986532 23567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|++|++.+++.+||+||+.+..... .....+....++++++.+||.+..++.+.+ |||||||||+|||||+.
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~ 147 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGS-----LSGGMRRRVGIAQALVG 147 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999999999998865432 122223344678899999998877777765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+.+|++++|++| ++++.|
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~-~~~~~d~i~~l~~g-~i~~~g 211 (211)
T cd03264 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVED-VESLCNQVAVLNKG-KLVFEG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHH-HHHhCCEEEEEECC-EEEecC
Confidence 9999999999999999999999999999876 5899999999875 45789999999874 666654
No 102
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.2e-38 Score=418.17 Aligned_cols=223 Identities=26% Similarity=0.408 Sum_probs=196.0
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--cccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKI 577 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~ 577 (1111)
..|+++||++.|+++++.+|+|||+++++||+++|+|||||||||||++|+|+.. |++|+|.++|+++.. ...++.
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchHHHHhhc
Confidence 3689999999996445789999999999999999999999999999999999875 689999999998642 245678
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
+||+||++.+++.+||+|||.|.++.+. ....+..++++++++.+||.+..++.+++ |||||||||+||+||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~~~-----LSGGqKQRLsLArAL 1076 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEAQD-----LSGGMQRKLSVAIAF 1076 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHH
Confidence 9999999999999999999999876532 22333445688999999999988888876 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYF 735 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f 735 (1111)
+.+|+||||||||+|||+.+++.++++|++++ +|+|||++||++++ +..++|++++|.+ |+++..|+++++++.|
T Consensus 1077 i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmde-a~~laDrI~iL~~-GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1077 VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDE-ADLLGDRIAIISQ-GRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEecCHHHHHHhc
Confidence 99999999999999999999999999999985 69999999999975 4578999999987 5789999999988766
No 103
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.4e-40 Score=356.01 Aligned_cols=215 Identities=26% Similarity=0.388 Sum_probs=175.4
Q ss_pred EEEEeEEEEEcCCc--ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------cc
Q 001270 502 VSFKDLTLTLKGKN--KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------HS 573 (1111)
Q Consensus 502 L~~~nLs~~y~~~~--k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~ 573 (1111)
|+++||+++|++.. ..+|+|+||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++.. ..
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~ 79 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRKI 79 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHHH
Confidence 67899999995321 269999999999999999999999999999999999765 688999999987532 23
Q ss_pred ccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHH
Q 001270 574 YKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 574 ~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQR 650 (1111)
+++.++|++|++ .+++.+||+||+.+....... ..........++++++.+|+. +..++.+.+ ||||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LS~G~~qr 153 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRYPHE-----LSGGQRQR 153 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCCchh-----cCHHHHHH
Confidence 567899999998 466789999999886543211 111111112235788999995 566776655 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |+++..|
T Consensus 154 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~-G~i~~~g 228 (228)
T cd03257 154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV-VAKIADRVAVMYA-GKIVEEG 228 (228)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999876 8999999999974 4568999999986 4666544
No 104
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-40 Score=361.21 Aligned_cols=220 Identities=23% Similarity=0.358 Sum_probs=184.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc---c-ccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH---S-YKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~---~-~r~ 576 (1111)
.|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+.+ +++|+|.++|.++... . .+.
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 5 LLSVSGLMMRFG--GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred eEEEeeEEEEEC--CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECCCCCHHHHHhc
Confidence 478999999994 4679999999999999999999999999999999999765 6899999999875321 1 244
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhcc----------ccc--hHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLS----------AHL--AKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGIS 644 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~----------~~~--~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLS 644 (1111)
.++|++|++.+++.+||+||+.++...... ... ...+....++++++.+||.+..++.+++ ||
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS 155 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGN-----LA 155 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhh-----CC
Confidence 699999999999999999999986431100 000 1112234578889999998888887765 99
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEE
Q 001270 645 GGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTV 723 (1111)
Q Consensus 645 GGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv 723 (1111)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |+++
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~-g~i~ 233 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKL-VMGISDRIYVVNQ-GTPL 233 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CeEE
Confidence 99999999999999999999999999999999999999999999875 8999999999875 4578999999986 5788
Q ss_pred EecCHhhH
Q 001270 724 YHGSVKKV 731 (1111)
Q Consensus 724 ~~G~~~~l 731 (1111)
+.|+++++
T Consensus 234 ~~~~~~~~ 241 (255)
T PRK11300 234 ANGTPEEI 241 (255)
T ss_pred ecCCHHHH
Confidence 99998765
No 105
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-41 Score=392.78 Aligned_cols=260 Identities=29% Similarity=0.412 Sum_probs=209.8
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHhcccccccccccccccccccCCCceEEEEEeEEEEEcCCcceeEeeeEEEEeCC
Q 001270 450 GKDLSTHSQIFNYAYAQLEKEKALQQENKNLTFSGVVSMATNTEVRKRPLIEVSFKDLTLTLKGKNKHLLRCVTGKIRPG 529 (1111)
Q Consensus 450 ~~~l~~~~~~~~~a~~~l~~~~~~~~e~~~l~~~~~~s~~~~~~~~~~~~i~L~~~nLs~~y~~~~k~IL~~VS~~I~~G 529 (1111)
-|++++.+|.-+.+.+..+......+.+.....++. .......+.++++.+||++.|++++ ++++|+||++++|
T Consensus 274 lR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~-----~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g 347 (559)
T COG4988 274 LRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE-----KAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAG 347 (559)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc-----ccccccCCCceeeecceEEecCCCC-cccCCceeEecCC
Confidence 367899999888887777777666555322111110 0112233457788889999997654 8999999999999
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC---CcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhcc
Q 001270 530 RITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE---PIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLS 606 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~ 606 (1111)
+.+||+|+||||||||+++|+|+.. +++|+|.+||.+. +...++++++||+|++.+|+. |++|||.++...
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~--- 421 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPD--- 421 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCc---
Confidence 9999999999999999999999875 5899999999874 455789999999999999965 999999987542
Q ss_pred ccchHHHHHHHHHHHHHHcCCCcc------ccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 001270 607 AHLAKADKVLVIERVIDTLGLQTV------RDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQL 680 (1111)
Q Consensus 607 ~~~~~~~~~~~v~~vL~~LGL~~~------~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~ 680 (1111)
.++ +.+.++++..||.+. .|+.+|+ ++++|||||+|||++||||+.+++++||||||++||.++++.
T Consensus 422 --~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~ 494 (559)
T COG4988 422 --ASD----EEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494 (559)
T ss_pred --CCH----HHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHH
Confidence 122 235566666666443 4566775 678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 681 LLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 681 Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|++.|.++++ ++|||++||++.. ...+|+|++|++ |++++.|..+++.
T Consensus 495 i~~~l~~l~~-~ktvl~itHrl~~--~~~~D~I~vld~-G~l~~~g~~~~L~ 542 (559)
T COG4988 495 ILQALQELAK-QKTVLVITHRLED--AADADRIVVLDN-GRLVEQGTHEELS 542 (559)
T ss_pred HHHHHHHHHh-CCeEEEEEcChHH--HhcCCEEEEecC-CceeccCCHHHHh
Confidence 9999999886 4999999999864 478999999986 5789999999874
No 106
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-40 Score=367.08 Aligned_cols=219 Identities=27% Similarity=0.435 Sum_probs=186.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC-----ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP-----IHSYK 575 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~-----~~~~r 575 (1111)
.|+++||+++|+ +++.+|+||||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++. ...++
T Consensus 5 ~l~~~~l~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 5 ILKVEELNYNYS-DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred eEEEEeEEEEeC-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECCCCcchHHHHH
Confidence 478999999995 23579999999999999999999999999999999999765 68999999998863 12356
Q ss_pred ccEEEEccCCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 001270 576 KIIGFVPQDDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVG 654 (1111)
Q Consensus 576 ~~IgyV~Qd~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIA 654 (1111)
+.|||+||++. .+...||+||+.++.... ..+..+...+++++++.+||.+..++.+.+ ||||||||++||
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrl~la 153 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIA 153 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCccc-----CCHHHHHHHHHH
Confidence 78999999973 233579999998865422 223334445688999999999888887765 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 655 LEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 655 rALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||+++. +.+.+|++++|.+| ++++.|+++++.
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dri~~l~~G-~i~~~g~~~~~~ 230 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDNVFVMKEG-RVILQGNPKEVF 230 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEECC-EEEEeCCHHHHh
Confidence 9999999999999999999999999999999999865 8999999999975 45789999999874 789999998864
No 107
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=5e-41 Score=356.94 Aligned_cols=209 Identities=30% Similarity=0.513 Sum_probs=173.8
Q ss_pred EEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEcc
Q 001270 504 FKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQ 583 (1111)
Q Consensus 504 ~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Q 583 (1111)
++||+++|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|+++. .+++.++||+|
T Consensus 2 ~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q 75 (213)
T cd03235 2 VEDLTVSYG--GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQ 75 (213)
T ss_pred cccceeEEC--CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEecc
Confidence 578999994 4679999999999999999999999999999999999765 58999999998653 35678999999
Q ss_pred CCCCC--CCCCHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 584 DDIVH--GNLTVEENLWFHARCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 584 d~~l~--~~LTV~EnL~f~a~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
++.++ ..+||+||+.+....... .........++++++++.+|+.+..++.+++ |||||||||+|||||+.+
T Consensus 76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~ 150 (213)
T cd03235 76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGE-----LSGGQQQRVLLARALVQD 150 (213)
T ss_pred ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCccc-----CCHHHHHHHHHHHHHHcC
Confidence 98763 347999999886432110 0011122334678899999998877777765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ | +++.|
T Consensus 151 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 151 PDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL-VLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEcC-c-EeecC
Confidence 99999999999999999999999999998789999999999875 5578999999975 4 55654
No 108
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.3e-40 Score=361.08 Aligned_cols=217 Identities=28% Similarity=0.381 Sum_probs=184.5
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----------
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---------- 571 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---------- 571 (1111)
|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~ 76 (252)
T TIGR03005 1 VRFSDVTKRFG--ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGRNGPLVP 76 (252)
T ss_pred CEEEEEEEEeC--CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccccc
Confidence 46899999994 4679999999999999999999999999999999999765 589999999987531
Q ss_pred ------ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 001270 572 ------HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISG 645 (1111)
Q Consensus 572 ------~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSG 645 (1111)
..+++.++||+|++.+++.+||.||+.++.... ......+....++++++.+|+.+..++.+.+ |||
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~ 149 (252)
T TIGR03005 77 ADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMPAQ-----LSG 149 (252)
T ss_pred cchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcChhh-----cCH
Confidence 134678999999999999999999998864211 1122233345678899999998877776654 999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEE
Q 001270 646 GQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVY 724 (1111)
Q Consensus 646 GQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~ 724 (1111)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|.+ |++++
T Consensus 150 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~~ 227 (252)
T TIGR03005 150 GQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF-AREFADRVCFFDK-GRIVE 227 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998765 8999999999875 4578999999987 57889
Q ss_pred ecCHhhH
Q 001270 725 HGSVKKV 731 (1111)
Q Consensus 725 ~G~~~~l 731 (1111)
.|+.+++
T Consensus 228 ~g~~~~~ 234 (252)
T TIGR03005 228 QGKPDEI 234 (252)
T ss_pred eCCHHHH
Confidence 9987765
No 109
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-40 Score=359.93 Aligned_cols=221 Identities=25% Similarity=0.327 Sum_probs=183.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCC-----cc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEP-----IH 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~-----~~ 572 (1111)
.|+++||++.|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|++.+. +++|+|.++|+++. ..
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYG--SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeC--CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 478999999994 457999999999999999999999999999999999987542 35899999998763 12
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.++|++|++.+++.+||.||+.++...+.. .....+....++++++.+|+.. ..++.+ ..||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~~ 155 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDYP-----SNLSGGQR 155 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccCh-----hhCCHHHH
Confidence 3567899999999999999999999886542210 0112233345788899999853 344444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.+++|++++|.+ |++++.|++
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~ 232 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQ-AARVSDYVAFLYL-GKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHH-HHhhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 6899999999875 4578999999986 578899998
Q ss_pred hhHH
Q 001270 729 KKVE 732 (1111)
Q Consensus 729 ~~l~ 732 (1111)
+++.
T Consensus 233 ~~~~ 236 (253)
T PRK14267 233 RKVF 236 (253)
T ss_pred HHHH
Confidence 7763
No 110
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-40 Score=361.55 Aligned_cols=217 Identities=25% Similarity=0.360 Sum_probs=181.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++|+++.|+ ++.+|+||||+|++||+++|+|+|||||||||++|+|+..+. +++|+|.++|+++.. .
T Consensus 12 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYG--EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 588999999994 467999999999999999999999999999999999986531 379999999987531 1
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ----TVRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~----~~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.+||++|++.+++ +||+||+.+..... .....+..+.++++++.+|+. +..++.++ .||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSgG~~ 160 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPAL-----SLSGGQQ 160 (258)
T ss_pred HHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChh-----hCCHHHH
Confidence 34678999999998887 89999999875432 122233334578899999984 33455554 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ |+|||++||+++. +.+.+|++++|.+ |++++.|++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~~~~~~ 237 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQ-AARISDYTGFFLM-GELIEFGQT 237 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999864 7999999999875 4578999999986 578999998
Q ss_pred hhH
Q 001270 729 KKV 731 (1111)
Q Consensus 729 ~~l 731 (1111)
+++
T Consensus 238 ~~~ 240 (258)
T PRK14268 238 RQI 240 (258)
T ss_pred HHH
Confidence 765
No 111
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-40 Score=360.51 Aligned_cols=219 Identities=25% Similarity=0.329 Sum_probs=181.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++|++++|+ ++.+|+||||+|++||+++|+|+|||||||||++|+|+..+. +++|+|.++|+++.. .
T Consensus 7 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYT--DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeC--CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 588999999994 457999999999999999999999999999999999987542 358999999987531 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ----TVRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~----~~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.|+||+|++.+++ +||+||+.++..... ........+.++++++.+|+. +..++.+. .||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LSgG~~ 156 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNAL-----SLSGGQQ 156 (254)
T ss_pred HHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcc-----cCCHHHH
Confidence 35678999999988884 899999998754321 112223345678888888873 34455544 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||+|+.+|++|||||||+|||+.++..+++.|++++ ++.|||++||+++. +.+.+|++++|.+ |+++..|++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~ 233 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQ-AGRISDRTAFFLN-GCIEEESST 233 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999999999986 47999999999975 4578999999986 578899998
Q ss_pred hhHH
Q 001270 729 KKVE 732 (1111)
Q Consensus 729 ~~l~ 732 (1111)
+++.
T Consensus 234 ~~~~ 237 (254)
T PRK14273 234 DELF 237 (254)
T ss_pred HHHH
Confidence 7763
No 112
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-40 Score=366.99 Aligned_cols=216 Identities=24% Similarity=0.348 Sum_probs=183.6
Q ss_pred EEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cc----cc
Q 001270 503 SFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HS----YK 575 (1111)
Q Consensus 503 ~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~----~r 575 (1111)
.++|+++.| +.+.+|+|+||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++.. .. .+
T Consensus 26 ~~~~~~~~~--~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~ 101 (269)
T cd03294 26 SKEEILKKT--GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRR 101 (269)
T ss_pred hhhhhhhhc--CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhc
Confidence 456888888 45689999999999999999999999999999999999765 578999999987532 11 23
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
+.++|++|++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+++ |||||||||+|||
T Consensus 102 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv~lAr 173 (269)
T cd03294 102 KKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDE-----LSGGMQQRVGLAR 173 (269)
T ss_pred CcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCccc-----CCHHHHHHHHHHH
Confidence 57999999999998999999999875432 112223345678899999998888887765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|+++++.
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~~ 249 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDE-ALRLGDRIAIMKD-GRLVQVGTPEEIL 249 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEEeCCHHHHH
Confidence 999999999999999999999999999999998754 8999999999875 5688999999986 5788999887663
No 113
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-40 Score=365.39 Aligned_cols=220 Identities=21% Similarity=0.357 Sum_probs=186.6
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 576 (1111)
..|+++|+++.|+++.+.+|+||||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ..+++
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~ 83 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKENLKEIRK 83 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCCHHHHhc
Confidence 4589999999996445679999999999999999999999999999999999765 578999999988632 24577
Q ss_pred cEEEEccCCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 577 IIGFVPQDDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 577 ~IgyV~Qd~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
.|||++|++. .++.+||+||+.+..... .....+....++++++.+||.+..++.+.+ ||||||||++|||
T Consensus 84 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~lar 155 (271)
T PRK13632 84 KIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQN-----LSGGQKQRVAIAS 155 (271)
T ss_pred ceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCccc-----CCHHHHHHHHHHH
Confidence 8999999974 566789999998865321 122233345678999999999888887765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||+.+|+||||||||+|||+.++..+++.|++++++ ++|||++||+++.. ..+|++++|.+ |+++..|+.+++.
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~--~~~d~v~~l~~-G~i~~~g~~~~~~ 230 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA--ILADKVIVFSE-GKLIAQGKPKEIL 230 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH--hhCCEEEEEEC-CEEEEecCHHHHh
Confidence 999999999999999999999999999999998766 59999999999753 47999999986 5788899887653
No 114
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-40 Score=364.27 Aligned_cols=217 Identities=24% Similarity=0.383 Sum_probs=183.3
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-----ccccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-----HSYKK 576 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----~~~r~ 576 (1111)
|+++||+++|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|++. +.+|+|.++|+++.. ..+++
T Consensus 2 l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 2 LATSDLWFRYQ--DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred eEEEEEEEEcC--CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHh
Confidence 67899999994 4579999999999999999999999999999999999765 689999999987631 13457
Q ss_pred cEEEEccCCCC-CCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIV-HGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 577 ~IgyV~Qd~~l-~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
.||||+|++.+ +...|+.||+.+..... .....+....++++++.+||.+..++.+.+ |||||||||+|||
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~lar 149 (271)
T PRK13638 78 QVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQC-----LSHGQKKRVAIAG 149 (271)
T ss_pred heEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCchh-----CCHHHHHHHHHHH
Confidence 89999999753 34568999998864322 122233334678899999998887777655 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+|+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|+++++.
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~~ 224 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL-IYEISDAVYVLRQ-GQILTHGAPGEVF 224 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHh
Confidence 9999999999999999999999999999999998779999999999875 4578999999987 5788999987763
No 115
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-41 Score=358.60 Aligned_cols=221 Identities=26% Similarity=0.413 Sum_probs=194.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 576 (1111)
-+++++|+++| +.-.+++||||++++||+++||||||||||||+|+|+|.+. |++|+|.++|+++.. +..+.
T Consensus 4 lL~v~~l~k~F--GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~ 79 (250)
T COG0411 4 LLEVRGLSKRF--GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARL 79 (250)
T ss_pred eeeeccceeec--CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhc
Confidence 46789999999 56789999999999999999999999999999999999775 689999999998642 22466
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhc--------cc-cchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRL--------SA-HLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~--------~~-~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQ 647 (1111)
.|+--||...+|++|||.||+..+...+. +. ...+.+..+++.++|+.+||.+.+|++.++ ||+||
T Consensus 80 Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~ 154 (250)
T COG0411 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGN-----LSYGQ 154 (250)
T ss_pred cceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhc-----CChhH
Confidence 79999999999999999999998855331 01 112445567789999999999999999987 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
|||+.|||||+.+|++|+||||.+||.+....++.+.|+++.++ |.||++|.||++. ++.++||+++|+. |+++++|
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG 232 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEG 232 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccC
Confidence 99999999999999999999999999999999999999999874 7999999999986 5799999999987 5789999
Q ss_pred CHhhHH
Q 001270 727 SVKKVE 732 (1111)
Q Consensus 727 ~~~~l~ 732 (1111)
+++++.
T Consensus 233 ~P~eV~ 238 (250)
T COG0411 233 TPEEVR 238 (250)
T ss_pred CHHHHh
Confidence 999875
No 116
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-40 Score=373.04 Aligned_cols=223 Identities=17% Similarity=0.268 Sum_probs=185.3
Q ss_pred EEEEEeEEEEEcCCc--ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CceeEEEECCeeCCc---cc
Q 001270 501 EVSFKDLTLTLKGKN--KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC--KATGLILINGKNEPI---HS 573 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~--k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~--~~sG~I~inG~~~~~---~~ 573 (1111)
.|+++||++.|+.+. ..+|+||||+|++||++||+|+||||||||+++|+|++.+. +++|+|.++|+++.. ..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 478999999996432 46999999999999999999999999999999999987531 478999999998632 11
Q ss_pred ----ccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc---cccccccCccCCCCC
Q 001270 574 ----YKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT---VRDSLVGTVEKRGIS 644 (1111)
Q Consensus 574 ----~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~---~~d~~vg~~~~rgLS 644 (1111)
.++.|+||||++ .+.+.+||.+++........ .....+..+++.++++.+||.+ ..+++++ +||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~-----~LS 155 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVYPH-----QLS 155 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCCch-----hCC
Confidence 224799999998 47888999999876654321 1233444567889999999974 3455554 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEE
Q 001270 645 GGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTV 723 (1111)
Q Consensus 645 GGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv 723 (1111)
|||||||+|||||+.+|+|||+||||+|||+.++..++++|+++.+ .|.|||+||||++. +.+++|++++|.+ |+++
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~-~~~~adri~vm~~-G~iv 233 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLAL-VAEAAHKIIVMYA-GQVV 233 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999976 49999999999975 4578999999986 5899
Q ss_pred EecCHhhHH
Q 001270 724 YHGSVKKVE 732 (1111)
Q Consensus 724 ~~G~~~~l~ 732 (1111)
+.|+.+++.
T Consensus 234 e~g~~~~~~ 242 (326)
T PRK11022 234 ETGKAHDIF 242 (326)
T ss_pred EECCHHHHh
Confidence 999998774
No 117
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.5e-40 Score=356.99 Aligned_cols=218 Identities=29% Similarity=0.440 Sum_probs=183.8
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc----ccccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH----SYKKI 577 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~----~~r~~ 577 (1111)
|+++|+++.|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++... ..++.
T Consensus 3 i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 3 LYLEGLSVSFD--GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred EEEEeeEEEcC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCHHHHHhcC
Confidence 67899999994 4579999999999999999999999999999999999765 6889999999875321 12457
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhcc--c---cchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLS--A---HLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~--~---~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
++|++|++.+++.+||+||+.+....... . .....+...+++++++.+|+.+..++.+++ |||||||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Ge~qrv~ 153 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGL-----LSHGQKQWLE 153 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHH
Confidence 99999999999999999999886432100 0 011123345678999999998887877765 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|||||+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++. +.+++|++++|.+ |++++.|+.+++
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~~~~~d~i~~l~~-g~~~~~~~~~~~ 229 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEF-VRSIADKVTVLHQ-GSVLAEGSLDQV 229 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHH-HHHhCCEEEEEEC-CeEEeeCCHHHH
Confidence 99999999999999999999999999999999999875 7899999999875 5578999999987 578899988765
No 118
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.7e-40 Score=353.69 Aligned_cols=208 Identities=27% Similarity=0.397 Sum_probs=177.5
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---c---ccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---H---SYK 575 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~---~~r 575 (1111)
|+++|+++.|++ .+.+|+||||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|+++.. . .++
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~ 78 (222)
T PRK10908 2 IRFEHVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNREVPFLR 78 (222)
T ss_pred EEEEeeEEEecC-CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChhHHHHHH
Confidence 678999999942 3579999999999999999999999999999999999765 689999999987532 1 246
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
+.++|++|++.+++.+||+||+.+..... .....+....++++++.+|+.+..++.+.+ |||||||||+|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lar 150 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPIQ-----LSGGEQQRVGIAR 150 (222)
T ss_pred hheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCchh-----CCHHHHHHHHHHH
Confidence 78999999998888999999998865432 122233334578899999998877777655 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEE
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLT 722 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~i 722 (1111)
||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +...+|++++|.+| ++
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G-~i 215 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL-ISRRSYRMLTLSDG-HL 215 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECC-EE
Confidence 9999999999999999999999999999999997778999999999975 45789999999875 54
No 119
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-40 Score=361.68 Aligned_cols=220 Identities=25% Similarity=0.419 Sum_probs=185.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++|++++|+ ++.+|+||||+|++||+++|+|+|||||||||++|+|+.. +.+|+|.++|+++. ...+++.
T Consensus 2 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~ 77 (255)
T PRK11231 2 TLRTENLTVGYG--TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARR 77 (255)
T ss_pred EEEEEeEEEEEC--CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhh
Confidence 478999999994 4679999999999999999999999999999999999765 58899999998752 2234567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
++|++|++.+++.+||.||+.++...... ...........++++++.+||.+..++.+++ |||||||||+||||
T Consensus 78 i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lara 152 (255)
T PRK11231 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMV 152 (255)
T ss_pred eEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCccc-----CCHHHHHHHHHHHH
Confidence 99999999888889999999885321100 0111122334578899999998887877765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|++++|.+| +++..|+.+++
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~-~~~~~d~i~~l~~G-~i~~~~~~~~~ 225 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQ-ASRYCDHLVVLANG-HVMAQGTPEEV 225 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH-HHHhcCEEEEEECC-eEEEEcCHHHh
Confidence 999999999999999999999999999999988779999999999974 56889999999874 78888987765
No 120
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-40 Score=360.09 Aligned_cols=221 Identities=26% Similarity=0.365 Sum_probs=183.8
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCC-----cc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEP-----IH 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~-----~~ 572 (1111)
.|+++|++++|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+..+. +++|+|.++|+++. ..
T Consensus 4 ~l~i~~v~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYG--SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEEC--CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 478999999994 457999999999999999999999999999999999987532 36999999998752 12
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ----TVRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~----~~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.++|++|++.+++.+||+||+.++...+. .....+..+.++++++.+||. +..++.++ .||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGG-----GLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcc-----cCCHHHH
Confidence 456789999999999999999999988754321 112233344678889999984 34455544 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe-----CCcEEE
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA-----KGGLTV 723 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~-----~GG~iv 723 (1111)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.+.+|++++|. +.|+++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~-~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQ-AARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-HHHhCCEEEEEecccCCCCceEE
Confidence 999999999999999999999999999999999999999864 6899999999875 457899999997 246889
Q ss_pred EecCHhhHH
Q 001270 724 YHGSVKKVE 732 (1111)
Q Consensus 724 ~~G~~~~l~ 732 (1111)
+.|+++++.
T Consensus 233 ~~~~~~~~~ 241 (258)
T PRK14241 233 EIDDTEKIF 241 (258)
T ss_pred ecCCHHHHH
Confidence 999987763
No 121
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-40 Score=365.74 Aligned_cols=217 Identities=25% Similarity=0.382 Sum_probs=184.8
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----cccccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKKI 577 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~~ 577 (1111)
|+++||+++|++ .+.+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|.++.. ..+++.
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 2 IRLENVSYSYPD-GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred EEEEEEEEEcCC-CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccHHHHHhh
Confidence 678999999953 3469999999999999999999999999999999999765 689999999987632 234678
Q ss_pred EEEEccCCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 578 IGFVPQDDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 578 IgyV~Qd~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
||||+|++. .+..+||.||+.+..... .....+..+.++++++.+||.+..++.+++ |||||||||+||||
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~lara 150 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPKT-----LSGGQGQCVALAGI 150 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCccc-----CCHHHHHHHHHHHH
Confidence 999999975 355689999998865422 122333345678899999999888877765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+.+|+||||||||+|||+.++..+++.|++++++|.|||++||+++. + ..+|++++|.+ |++++.|+++++.
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~~~~ 223 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDR-GKIVLEGEPENVL 223 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEEC-CEEEEECCHHHHh
Confidence 999999999999999999999999999999998779999999999975 4 56999999987 5788999988763
No 122
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-40 Score=361.73 Aligned_cols=217 Identities=30% Similarity=0.453 Sum_probs=184.4
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccccE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~I 578 (1111)
|+++||++.|+ ++.+|+||||+|++|++++|+|||||||||||++|+|+.. +.+|+|.++|.++.. ..+++.+
T Consensus 3 l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 3 LEARNLSVRLG--GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred EEEEeEEEEeC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhhe
Confidence 78999999994 4679999999999999999999999999999999999765 688999999987532 2345679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
+|++|++.+++.+||+||+.+..... .....+....++++++.+||.+..++.+++ |||||||||+|||||+
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGe~qrv~la~al~ 150 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYPQ-----LSGGEQQRVQLARVLA 150 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCccc-----CCHHHHHHHHHHHHHh
Confidence 99999998888899999998864321 111122234578899999998877887765 9999999999999999
Q ss_pred ------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 659 ------MEPSLLLLDEPTSGLDSASSQLLLRALRREA-LEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 659 ------~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la-~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
.+|++|||||||+|||+.++..+.+.|++++ ++|+|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 228 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNL-AARYADRIVLLHQ-GRLVADGTPAEV 228 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhcCEEEEEEC-CEEEeeCCHHHH
Confidence 5999999999999999999999999999987 578999999999875 4578999999986 578889988765
Q ss_pred H
Q 001270 732 E 732 (1111)
Q Consensus 732 ~ 732 (1111)
.
T Consensus 229 ~ 229 (258)
T PRK13548 229 L 229 (258)
T ss_pred h
Confidence 3
No 123
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-40 Score=373.15 Aligned_cols=221 Identities=22% Similarity=0.283 Sum_probs=187.3
Q ss_pred EEEEEeEEEEEcC--------CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-
Q 001270 501 EVSFKDLTLTLKG--------KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI- 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~--------~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~- 571 (1111)
.|+++||++.|.. +...+|+||||+|++||++||+|+||||||||+++|+|++. +.+|+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEcCcC
Confidence 4789999999952 12579999999999999999999999999999999999875 578999999988632
Q ss_pred -----ccccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCC
Q 001270 572 -----HSYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGI 643 (1111)
Q Consensus 572 -----~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgL 643 (1111)
..+++.|+||||++ .+.+.+||.+++........ ...+.+..+++.++++.+||.+ ..++++. .|
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~-----~L 155 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYPH-----MF 155 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCCc-----cC
Confidence 13567899999997 58889999999987654321 2234445567899999999963 5676665 49
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEE
Q 001270 644 SGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLT 722 (1111)
Q Consensus 644 SGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~i 722 (1111)
||||||||+|||||+.+|+|||+||||++||..++..|+++|+++.++ |.|||+||||++. +.+++|++++|.+ |++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~-~~~~adrv~vm~~-G~i 233 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSV-VEHIADEVMVMYL-GRC 233 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999764 9999999999975 4578999999986 589
Q ss_pred EEecCHhhHH
Q 001270 723 VYHGSVKKVE 732 (1111)
Q Consensus 723 v~~G~~~~l~ 732 (1111)
++.|+.+++.
T Consensus 234 ve~g~~~~~~ 243 (327)
T PRK11308 234 VEKGTKEQIF 243 (327)
T ss_pred EEECCHHHHh
Confidence 9999988774
No 124
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-41 Score=364.85 Aligned_cols=221 Identities=24% Similarity=0.322 Sum_probs=196.4
Q ss_pred eEEEEEeEEEEEcCC----------------------cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC
Q 001270 500 IEVSFKDLTLTLKGK----------------------NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACK 557 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~----------------------~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~ 557 (1111)
..|+++||.+-|+.. ...-++|+||+|+.|||..|||-||||||||+++|.++.. |
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--p 80 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--P 80 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--C
Confidence 357888998888531 1235899999999999999999999999999999999775 6
Q ss_pred ceeEEEECCeeCC---cc---c-ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc
Q 001270 558 ATGLILINGKNEP---IH---S-YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV 630 (1111)
Q Consensus 558 ~sG~I~inG~~~~---~~---~-~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~ 630 (1111)
++|+|+++|+++. .. . .++++++|||+..|+|+.||.||..|+...+ +++++++++++.+.|+.+||..+
T Consensus 81 t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 81 TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhh
Confidence 8999999999852 11 2 3568999999999999999999999998865 57888899999999999999999
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHh
Q 001270 631 RDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRM 709 (1111)
Q Consensus 631 ~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~ 709 (1111)
.++++.+ |||||||||.|||||+.+|+|||+|||+|+|||--+.++.+.|.+|.++ ++|||+||||++++ +++
T Consensus 158 ~~~yp~e-----LSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEA-lri 231 (386)
T COG4175 158 ADKYPNE-----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEA-LRI 231 (386)
T ss_pred hhcCccc-----ccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHH-Hhc
Confidence 9998876 9999999999999999999999999999999999999999999888654 89999999999875 599
Q ss_pred cCeEEEEeCCcEEEEecCHhhHH
Q 001270 710 FDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 710 ~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
.|||.+|.+ |+++..|+++|+.
T Consensus 232 G~rIaimkd-G~ivQ~Gtp~eIl 253 (386)
T COG4175 232 GDRIAIMKD-GEIVQVGTPEEIL 253 (386)
T ss_pred cceEEEecC-CeEEEeCCHHHHH
Confidence 999999975 6899999999975
No 125
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-40 Score=351.99 Aligned_cols=217 Identities=29% Similarity=0.460 Sum_probs=189.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 576 (1111)
.|+++||+..| +..++|++|||++++||+++|+|+|||||||||++|+|+.+ +.+|+|.++|++++. ...|.
T Consensus 3 mL~v~~l~~~Y--G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 3 MLEVENLSAGY--GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred ceeEEeEeecc--cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhC
Confidence 47899999999 55789999999999999999999999999999999999775 568999999999742 24578
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHc-CCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTL-GLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~L-GL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
.|+||||...+|+.|||+|||..++..+.. +......++++.+.+ .|.+.++++.|+ |||||||.++|||
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLAiaR 149 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGT-----LSGGEQQMLAIAR 149 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccC-----CChHHHHHHHHHH
Confidence 899999999999999999999998654321 111112267788877 578888888887 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||+.+|++|+|||||.||-|.-.++|.+.|++++++ |.||++|.++...+ .+++|+.++|.+ |+++++|+.+++.
T Consensus 150 ALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~A-l~iaDr~yvle~-Griv~~G~~~eL~ 225 (237)
T COG0410 150 ALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFA-LEIADRGYVLEN-GRIVLSGTAAELL 225 (237)
T ss_pred HHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHH-HHhhCEEEEEeC-CEEEEecCHHHHh
Confidence 999999999999999999999999999999999966 78999999998875 589999999987 5899999998875
No 126
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=4.7e-40 Score=361.72 Aligned_cols=220 Identities=25% Similarity=0.390 Sum_probs=184.2
Q ss_pred EEEEeEEEEEcCC-------cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---
Q 001270 502 VSFKDLTLTLKGK-------NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--- 571 (1111)
Q Consensus 502 L~~~nLs~~y~~~-------~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--- 571 (1111)
|+++||++.|+.. ++.+|+||||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLDR 80 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccCH
Confidence 7889999999531 4679999999999999999999999999999999999765 689999999987532
Q ss_pred c---cccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCH
Q 001270 572 H---SYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISG 645 (1111)
Q Consensus 572 ~---~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSG 645 (1111)
. .+++.|+||+|++ .+++.+||+||+.+..... ..........+++++++.+||. ...++.+++ |||
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----LSg 153 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLPRQ-----LSG 153 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCChhh-----CCH
Confidence 1 2456799999996 4667899999998764321 1122223345678899999996 566776654 999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEE
Q 001270 646 GQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVY 724 (1111)
Q Consensus 646 GQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~ 724 (1111)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~~ 231 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRL-VQSFCQRVAVMDK-GQIVE 231 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHHhcEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998865 8999999999875 4578999999986 57899
Q ss_pred ecCHhhHH
Q 001270 725 HGSVKKVE 732 (1111)
Q Consensus 725 ~G~~~~l~ 732 (1111)
.|+++++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99988764
No 127
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-40 Score=380.94 Aligned_cols=204 Identities=24% Similarity=0.321 Sum_probs=176.9
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cc----ccccEEEEccCCCCCC
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HS----YKKIIGFVPQDDIVHG 589 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~----~r~~IgyV~Qd~~l~~ 589 (1111)
.+|+|+||+|++||+++|+|||||||||||++|+|++. +++|+|+++|+++.. .. .++.||||+|++.+++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 48999999999999999999999999999999999875 689999999988632 11 2357999999999999
Q ss_pred CCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001270 590 NLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP 669 (1111)
Q Consensus 590 ~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEP 669 (1111)
++||+||+.++.... .....+..++++++++.+||.+..++++.+ |||||||||+|||||+.+|+|||||||
T Consensus 120 ~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~-----LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 120 HMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYPDE-----LSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred CCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999876532 123334445688999999999888887765 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 670 TSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 670 TSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+|||+.++..+.+.|+++.+ .|+|||++||+++. +.+++|++++|.+ |+++..|+++++.
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~-~~~~~Dri~vL~~-G~i~~~g~~~~l~ 253 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDE-AMRIGDRIAIMQN-GEVVQVGTPDEIL 253 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHH-HHHhCCEEEEEEC-CEEEecCCHHHHH
Confidence 999999999999999999875 48999999999975 4588999999987 5788999987763
No 128
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-40 Score=362.04 Aligned_cols=218 Identities=27% Similarity=0.419 Sum_probs=184.8
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-----ccccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-----HSYKK 576 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----~~~r~ 576 (1111)
|+++||++.|++ .+.+|+||||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ..+++
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (275)
T PRK13639 2 LETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKSLLEVRK 78 (275)
T ss_pred EEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccchHHHHHh
Confidence 678999999952 3569999999999999999999999999999999999765 578999999987631 13467
Q ss_pred cEEEEccCCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 577 IIGFVPQDDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 577 ~IgyV~Qd~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
.|+|++|++. .+..+||.||+.++.... .....+...++.++++.+||.+..++.+++ ||||||||++|||
T Consensus 79 ~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LS~Gq~qrv~lar 150 (275)
T PRK13639 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPHH-----LSGGQKKRVAIAG 150 (275)
T ss_pred heEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChhh-----CCHHHHHHHHHHH
Confidence 8999999963 333579999998764321 122333445678899999999888887765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||+++. +.+++|++++|.+ |++++.|+++++.
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~~ 225 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL-VPVYADKVYVMSD-GKIIKEGTPKEVF 225 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHh
Confidence 9999999999999999999999999999999998779999999999875 4578999999987 5788999988764
No 129
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-40 Score=363.32 Aligned_cols=219 Identities=29% Similarity=0.423 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 577 (1111)
.|+++||+++|++ .+.+|+||||+|++||+++|+|+||||||||+++|+|+.. +++|+|.++|+++.. ..+++.
T Consensus 3 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~ 79 (277)
T PRK13652 3 LIETRDLCYSYSG-SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENIREVRKF 79 (277)
T ss_pred eEEEEEEEEEeCC-CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhh
Confidence 3789999999953 3469999999999999999999999999999999999765 689999999987532 245678
Q ss_pred EEEEccCCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 578 IGFVPQDDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 578 IgyV~Qd~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
+|||+|++. .+...||.||+.+..... ........++++++++.+||.+..++.+.+ |||||||||+||||
T Consensus 80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrl~lara 151 (277)
T PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPHH-----LSGGEKKRVAIAGV 151 (277)
T ss_pred eEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCccc-----CCHHHHHHHHHHHH
Confidence 999999974 233679999998765421 123333345678999999998888887765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|.+ |++++.|+++++.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~~~~~drv~~l~~-G~i~~~g~~~~~~ 226 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL-VPEMADYIYVMDK-GRIVAYGTVEEIF 226 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEEECCHHHHh
Confidence 99999999999999999999999999999999875 8999999999975 4578999999987 5788999998874
No 130
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-40 Score=363.96 Aligned_cols=219 Identities=25% Similarity=0.390 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCce---eEEEECCeeCCc---ccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKAT---GLILINGKNEPI---HSY 574 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~s---G~I~inG~~~~~---~~~ 574 (1111)
.|+++|+++.|++..+.+|+||||+|++||+++|+||||||||||+++|+|++. +.+ |+|.++|+++.. ...
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~--p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL--PDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCCCCCcEEEECCEECCcCCHHHH
Confidence 588999999996434569999999999999999999999999999999999875 344 999999998642 235
Q ss_pred cccEEEEccCCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 001270 575 KKIIGFVPQDDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 575 r~~IgyV~Qd~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaI 653 (1111)
++.||||+|++. +++.+||+|||.|..... ....++..++++++++.+||.+..++.+.+ |||||||||+|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LS~G~~qrv~l 154 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPAN-----LSGGQKQRVAI 154 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCccc-----CCHHHHHHHHH
Confidence 678999999974 566789999998865322 233344445688999999999888877754 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..+|++++|.+ |++++.|+++++.
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~~~~ 231 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999765 8999999999975 3 57999999986 5789999998764
No 131
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.2e-40 Score=361.13 Aligned_cols=222 Identities=25% Similarity=0.415 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC-CceeEEEECCeeCCc--------
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC-KATGLILINGKNEPI-------- 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~-------- 571 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+..+. +.+|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFN--QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeC--CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 378999999994 467999999999999999999999999999999999987543 246999999987532
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccc-----cchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 001270 572 HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSA-----HLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGG 646 (1111)
Q Consensus 572 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~-----~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGG 646 (1111)
..+++.++|+||++.+++.+||+||+.+......+. .....+...+++++++.+||.+..++.+++ ||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G 156 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST-----LSGG 156 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccc-----cCHH
Confidence 123567999999999999999999998764211000 011122345678999999998877877765 9999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEe
Q 001270 647 QRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYH 725 (1111)
Q Consensus 647 QrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~ 725 (1111)
|||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~-~~~~~d~i~~l~~-g~i~~~ 234 (262)
T PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY-ALRYCERIVALRQ-GHVFYD 234 (262)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999764 8999999999975 4588999999986 578899
Q ss_pred cCHhhH
Q 001270 726 GSVKKV 731 (1111)
Q Consensus 726 G~~~~l 731 (1111)
|+++++
T Consensus 235 g~~~~~ 240 (262)
T PRK09984 235 GSSQQF 240 (262)
T ss_pred CCHHHh
Confidence 998764
No 132
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-40 Score=361.44 Aligned_cols=207 Identities=24% Similarity=0.317 Sum_probs=179.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|.+.. .+++.++|
T Consensus 12 ~l~i~~l~~~~~--~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~--~~~~~i~~ 85 (257)
T PRK11247 12 PLLLNAVSKRYG--ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPLA--EAREDTRL 85 (257)
T ss_pred cEEEEEEEEEEC--CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEHH--HhhCceEE
Confidence 478999999994 4679999999999999999999999999999999999765 57899999997642 45678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
++|++.+++.+||+||+.+... . . ....++++++.+||.+..++.+.+ |||||||||+|||+|+.+
T Consensus 86 v~q~~~l~~~~tv~enl~~~~~-----~--~--~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 86 MFQDARLLPWKKVIDNVGLGLK-----G--Q--WRDAALQALAAVGLADRANEWPAA-----LSGGQKQRVALARALIHR 151 (257)
T ss_pred EecCccCCCCCcHHHHHHhccc-----c--h--HHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhcC
Confidence 9999999988999999987531 0 1 123567899999998877777655 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
|++|||||||+|||+.++..+.+.|+++.+ +|+|||++||+++. +.+.+|++++|.+ |++++.|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~-~~~~~d~i~~l~~-G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE-AVAMADRVLLIEE-GKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEeecccc
Confidence 999999999999999999999999999865 58999999999875 4578999999987 5778877653
No 133
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-40 Score=355.90 Aligned_cols=219 Identities=26% Similarity=0.323 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCC---CCCCceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKA---IACKATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~---~~~~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++|+++.|+ .+.+|+||||+|++||+++|+||||||||||+++|+|+. ++.+++|+|.++|+++.. .
T Consensus 3 ~l~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYG--DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEEC--CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 578999999994 467999999999999999999999999999999999963 221258999999987632 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.|+||+|++.+++ .||.||+.++...+. ..........++++++.+||.+ ..++.+ +.||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~~ 152 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKESA-----FALSGGQQ 152 (250)
T ss_pred HHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCCc-----ccCCHHHH
Confidence 35678999999998886 699999988754321 0111223345788999999864 334444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||+++. +.+.+|++++|.+ |++++.|++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~-~~~~~d~v~~l~~-G~~~~~~~~ 229 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQ-AARVSDKTAFFYM-GEMVEYDDT 229 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHH-HHhhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999985 57999999999975 4588999999986 578999998
Q ss_pred hhHH
Q 001270 729 KKVE 732 (1111)
Q Consensus 729 ~~l~ 732 (1111)
+++.
T Consensus 230 ~~~~ 233 (250)
T PRK14245 230 KKIF 233 (250)
T ss_pred HHHh
Confidence 8774
No 134
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.4e-40 Score=353.68 Aligned_cols=213 Identities=28% Similarity=0.430 Sum_probs=180.0
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc----ccccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH----SYKKI 577 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~----~~r~~ 577 (1111)
|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+.. +.+|+|.++|.++... ..++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (230)
T TIGR03410 1 LEVSNLNVYYG--QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAG 76 (230)
T ss_pred CEEEeEEEEeC--CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhC
Confidence 46899999994 4679999999999999999999999999999999999765 6899999999875321 13567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcC-CCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLG-LQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LG-L~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
++|++|++.+++.+||.||+.++..... .. ..+.++++++.++ +.+..++.+.+ |||||||||+|||+
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~~~-----LS~G~~qrv~la~a 145 (230)
T TIGR03410 77 IAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRGGD-----LSGGQQQQLAIARA 145 (230)
T ss_pred eEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCChhh-----CCHHHHHHHHHHHH
Confidence 9999999999999999999988754321 11 1223567777776 56666776654 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 146 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~v~~l~~-g~i~~~~~~~~~ 219 (230)
T TIGR03410 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF-ARELADRYYVMER-GRVVASGAGDEL 219 (230)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHc
Confidence 99999999999999999999999999999998874 8999999999875 4568999999986 578899998876
No 135
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.9e-41 Score=353.66 Aligned_cols=222 Identities=27% Similarity=0.444 Sum_probs=204.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|++++|+++| +++.+++|+||++++|+|.+++|||||||||++++|.|++. +++|+|.++|.+++. ..+.+|||
T Consensus 2 ~L~ie~vtK~F--g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~-~~~~rIGy 76 (300)
T COG4152 2 ALEIEGVTKSF--GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQ-EIKNRIGY 76 (300)
T ss_pred ceEEecchhcc--CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhh-hhhhhccc
Confidence 47899999999 67899999999999999999999999999999999999875 689999999998753 46778999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
+|.+..||+.+||.|.|.|.+.+. ++++++.+..++.+|+++++.....+++.+ ||.|++|++.+..+++++
T Consensus 77 LPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~-----LSKGnqQKIQfisaviHe 148 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKE-----LSKGNQQKIQFISAVIHE 148 (300)
T ss_pred ChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHHH-----hhhhhhHHHHHHHHHhcC
Confidence 999999999999999999999875 577888888899999999999988888876 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHHHh
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYFAG 737 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f~~ 737 (1111)
|+++|||||+|||||.+.+.+.+.+.+++++|.|||+++|.++. +.++||++++|.+ |+.|.+|+++++..-|..
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~-vEeLCD~llmL~k-G~~V~~G~v~~ir~~~Gk 223 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEH-VEELCDRLLMLKK-GQTVLYGTVEDIRRSFGK 223 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHH-HHHHhhhhheecC-CceEEeccHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999985 5799999999986 578999999999876643
No 136
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-40 Score=361.72 Aligned_cols=220 Identities=25% Similarity=0.396 Sum_probs=185.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++. ...+++.
T Consensus 11 ~l~i~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 11 TFALRNVSFRVP--GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred eEEEeeEEEEEC--CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEehhhCCHHHHhhh
Confidence 488999999994 4679999999999999999999999999999999999765 68899999998752 2345678
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
++|++|++.+++.+||.||+.+....... ..........+++++++.+||.+..++.+++ |||||||||+||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~lara 161 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAML 161 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCccc-----CCHHHHHHHHHHHH
Confidence 99999998888889999999875321100 0001112234578899999998877887765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~-i~~~~d~i~~l~~-G~i~~~~~~~~~ 235 (265)
T PRK10575 162 VAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINM-AARYCDYLVALRG-GEMIAQGTPAEL 235 (265)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CeEEEecCHHHh
Confidence 99999999999999999999999999999999765 8999999999874 5578999999986 578899988765
No 137
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-40 Score=359.96 Aligned_cols=219 Identities=24% Similarity=0.341 Sum_probs=185.4
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 577 (1111)
.|+++|+++.|++..+.+|+|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ..+++.
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhh
Confidence 478999999996433569999999999999999999999999999999999765 588999999987632 245678
Q ss_pred EEEEccCCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 578 IGFVPQDDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 578 IgyV~Qd~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
|+|++|++. +++..|+.+|+.+..... .....+..+.++++++.+|+.+..++.+.+ |||||||||+||||
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~lara 156 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPNA-----LSGGQKQRVAIAGV 156 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCccc-----CCHHHHHHHHHHHH
Confidence 999999974 677789999998875422 122233344678899999998877777654 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++.. . .+|++++|.+ |++++.|+++++.
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~-~-~~d~i~~l~~-G~i~~~g~~~~~~ 230 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEA-M-EADHVIVMNK-GTVYKEGTPTEIF 230 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHH-h-cCCEEEEEEC-CEEEEecCHHHHh
Confidence 99999999999999999999999999999998764 89999999999754 3 4999999986 5788999988763
No 138
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=5.7e-40 Score=358.93 Aligned_cols=219 Identities=28% Similarity=0.397 Sum_probs=184.2
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccccE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~I 578 (1111)
|+++|+++.|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++.. ...++.+
T Consensus 2 l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i 77 (256)
T TIGR03873 2 LRLSRVSWSAG--GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRRARARRV 77 (256)
T ss_pred ceEEeEEEEEC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHHHHhhhe
Confidence 57899999994 4679999999999999999999999999999999999765 578999999987532 2345679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
+|++|++.+++.+||+||+.++...... ......+...++.++++.+|+.+..++.+.+ |||||||||+|||||
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al 152 (256)
T TIGR03873 78 ALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMST-----LSGGERQRVHVARAL 152 (256)
T ss_pred EEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHHHHHHH
Confidence 9999998878889999999885321100 0011122234678899999998888887765 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+| ++++.|+.+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G-~i~~~g~~~~~ 224 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNL-AASYCDHVVVLDGG-RVVAAGPPREV 224 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeCC-CEEEecCHHHh
Confidence 99999999999999999999999999999998778999999999975 55889999999874 78899988765
No 139
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=370.35 Aligned_cols=225 Identities=18% Similarity=0.239 Sum_probs=183.2
Q ss_pred EEEEEeEEEEEcC--CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC--CCceeEEEECCeeCCc---cc
Q 001270 501 EVSFKDLTLTLKG--KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA--CKATGLILINGKNEPI---HS 573 (1111)
Q Consensus 501 ~L~~~nLs~~y~~--~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~--~~~sG~I~inG~~~~~---~~ 573 (1111)
.|+++||++.|.. +...+|+||||+|++||+++|+|+||||||||+++|+|+..+ .+++|+|.++|+++.. ..
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4789999999953 235799999999999999999999999999999999998752 2578999999987632 11
Q ss_pred ----ccccEEEEccCCC--CCCCCCHHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHcCCCcc---ccccccCccCC
Q 001270 574 ----YKKIIGFVPQDDI--VHGNLTVEENLWFHARCRLSAH---LAKADKVLVIERVIDTLGLQTV---RDSLVGTVEKR 641 (1111)
Q Consensus 574 ----~r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~~~~~~~---~~~~~~~~~v~~vL~~LGL~~~---~d~~vg~~~~r 641 (1111)
.++.|+||||++. +.+.+||.+++.+......... ....+..+++.++++.+||.+. .++++.
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~----- 157 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPY----- 157 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCch-----
Confidence 2357999999975 6788999999986432110000 0112334567899999999753 355554
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCc
Q 001270 642 GISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGG 720 (1111)
Q Consensus 642 gLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG 720 (1111)
+|||||||||+|||||+.+|+||||||||+|||+.++..++++|+++.++ |.|||+||||++. +.+++|++++|.+ |
T Consensus 158 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~-v~~~~dri~vm~~-G 235 (330)
T PRK15093 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQM-LSQWADKINVLYC-G 235 (330)
T ss_pred hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEEEC-C
Confidence 59999999999999999999999999999999999999999999999875 9999999999975 4588999999976 5
Q ss_pred EEEEecCHhhHH
Q 001270 721 LTVYHGSVKKVE 732 (1111)
Q Consensus 721 ~iv~~G~~~~l~ 732 (1111)
++++.|+.+++.
T Consensus 236 ~ive~g~~~~i~ 247 (330)
T PRK15093 236 QTVETAPSKELV 247 (330)
T ss_pred EEEEECCHHHHH
Confidence 899999987763
No 140
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=9.3e-40 Score=350.69 Aligned_cols=211 Identities=26% Similarity=0.325 Sum_probs=177.5
Q ss_pred EEEEEeEEEEEcCCc--ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc---c--
Q 001270 501 EVSFKDLTLTLKGKN--KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH---S-- 573 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~--k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~---~-- 573 (1111)
.|+++||+++|+++. +.+|+|+||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|++.... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcccCCHHHHH
Confidence 478999999996422 359999999999999999999999999999999999765 6899999999875321 1
Q ss_pred -c-cccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 001270 574 -Y-KKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 574 -~-r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
. ++.++|++|++.+++.+||.||+.+....+ .....+..++++++++.+||.+..++.+.+ |||||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Ge~qrl 155 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPAQ-----LSGGEQQRV 155 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhh-----CCHHHHHHH
Confidence 2 357999999999999999999998865322 112233345688999999998877777765 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEE
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVY 724 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~ 724 (1111)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. + +.+|++++|.+| ++++
T Consensus 156 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~g-~i~~ 226 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDRRLRLVNG-QLQE 226 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECC-EEEe
Confidence 9999999999999999999999999999999999998765 8999999999874 4 569999999864 6553
No 141
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=355.40 Aligned_cols=218 Identities=25% Similarity=0.349 Sum_probs=179.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC---CCCceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAI---ACKATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~---~~~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++||+++|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+.. +.+++|+|.++|+++.. .
T Consensus 6 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYG--DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEEC--CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 378999999994 4579999999999999999999999999999999999753 12478999999987532 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.|+||+|++.+++ .||+||+.++...+. ........++++++++.+|+.+ ..++.+ +.||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgGq~ 155 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHESA-----LGLSGGQQ 155 (253)
T ss_pred HHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc-----ccCCHHHH
Confidence 34678999999998887 599999998754321 1112223356788899999854 234444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++. +++|||++||+++. +.+.+|++++|.+ |++++.|++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~-~~~~~d~v~~l~~-G~i~~~g~~ 232 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQ-AARVSDVTAFFYM-GKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999999999985 47999999999975 4578999999987 578899988
Q ss_pred hhH
Q 001270 729 KKV 731 (1111)
Q Consensus 729 ~~l 731 (1111)
+++
T Consensus 233 ~~~ 235 (253)
T PRK14242 233 EQI 235 (253)
T ss_pred HHH
Confidence 765
No 142
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-40 Score=360.84 Aligned_cols=222 Identities=27% Similarity=0.395 Sum_probs=186.2
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 576 (1111)
..|+++||+++|+ ++.+|+||||+|.+||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ...++
T Consensus 6 ~~l~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 6 ARLRGEQLTLGYG--KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred cEEEEEEEEEEEC--CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCHHHHhh
Confidence 3688999999994 4679999999999999999999999999999999999765 578999999987532 23456
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
.|+|++|++.+++.+||+||+.++...... ...........++++++.+||.+..++.+.+ ||||||||++|||
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv~lar 156 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDT-----LSGGQRQRAWIAM 156 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCccc-----CChHHHHHHHHHH
Confidence 799999999999889999999875311100 0001112234578899999998877877755 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+++|++++|.+ |++++.|+++++.
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~~ 232 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQ-ACRYASHLIALRE-GKIVAQGAPKEIV 232 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHh
Confidence 999999999999999999999999999999999864 8999999999974 5689999999986 5788999987764
No 143
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-40 Score=362.58 Aligned_cols=219 Identities=21% Similarity=0.354 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEcCC----cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----c
Q 001270 501 EVSFKDLTLTLKGK----NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~----~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~ 572 (1111)
.|+++||+++|++. .+.+|+||||+|++||+++|+|+||||||||+++|+|++. +.+|+|.++|.++.. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeccccccHH
Confidence 47899999999632 3579999999999999999999999999999999999875 689999999987642 2
Q ss_pred cccccEEEEccCCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 001270 573 SYKKIIGFVPQDDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
.+++.||||||++. .+...||.||+.|+.... .....+..+.++++++.+||.+..++.+++ |||||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv 153 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPHL-----LSGGQKQRV 153 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHH
Confidence 35678999999974 222469999999875422 123334445688999999999888887765 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++.. ..+|++++|.+ |++++.|++++
T Consensus 154 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~--~~~d~v~~l~~-G~i~~~g~~~~ 230 (280)
T PRK13633 154 AIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEA--VEADRIIVMDS-GKVVMEGTPKE 230 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHH--hcCCEEEEEEC-CEEEEecCHHH
Confidence 9999999999999999999999999999999999999764 99999999999864 34999999987 57889999988
Q ss_pred HH
Q 001270 731 VE 732 (1111)
Q Consensus 731 l~ 732 (1111)
+.
T Consensus 231 ~~ 232 (280)
T PRK13633 231 IF 232 (280)
T ss_pred Hh
Confidence 74
No 144
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-40 Score=355.26 Aligned_cols=220 Identities=27% Similarity=0.359 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC-CCceeEEEECCeeCCc---ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA-CKATGLILINGKNEPI---HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~-~~~sG~I~inG~~~~~---~~~r~ 576 (1111)
.++++|+++.|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+..+ .+.+|+|.++|+++.. ..+++
T Consensus 2 ~~~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYG--KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEEC--CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 478899999994 46799999999999999999999999999999999997642 3679999999987632 24567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
.|+|+||++.+++ .||+||+.++...+... .......++++++++.+||.+ ..++.+ +.|||||||||+
T Consensus 80 ~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLKQNA-----LALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhcCCc-----ccCCHHHHHHHH
Confidence 8999999998886 69999999865332100 011223345788999999953 334433 459999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|||||+.+|+||||||||+|||+.++..+.+.|+++.+ |+|||++||+++. +.+.+|++++|.+ |++++.|+.+++.
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~~ 229 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQ-GKRVADYTAFFHL-GELIEFGESKEFF 229 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH-HHhhCcEEEEEEC-CEEEEECCHHHHH
Confidence 99999999999999999999999999999999999864 8999999999875 4578999999986 5789999987653
No 145
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=357.55 Aligned_cols=220 Identities=24% Similarity=0.337 Sum_probs=182.4
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC---CCceeEEEECCeeCCc-----
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA---CKATGLILINGKNEPI----- 571 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~----- 571 (1111)
..|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+..+ .+++|+|.++|+++..
T Consensus 12 ~~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 12 SKIQVRNLNFYYG--KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred ceEEEEEEEEEeC--CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 3588999999994 45799999999999999999999999999999999998642 1478999999987531
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHH
Q 001270 572 HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ----TVRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 572 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~----~~~d~~vg~~~~rgLSGGQ 647 (1111)
..+++.|+|++|++.+++ +||+||+.+...... .....+..++++++++.+|+. +..++.++ .|||||
T Consensus 90 ~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LS~Gq 161 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSGY-----SLSGGQ 161 (260)
T ss_pred HHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCC-----CCCHHH
Confidence 235678999999998887 899999988654221 122333345678899999984 33455444 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
||||+|||||+.+|+||||||||+|||+.++..+.+.|+++. ++.|||++||+++. +.+.+|++++|.+ |+++..|+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~ 238 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQ-AARCSDYTAFMYL-GELIEFGN 238 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCC
Confidence 999999999999999999999999999999999999999985 47899999999874 5578999999986 57889999
Q ss_pred HhhHH
Q 001270 728 VKKVE 732 (1111)
Q Consensus 728 ~~~l~ 732 (1111)
.+++.
T Consensus 239 ~~~~~ 243 (260)
T PRK10744 239 TDTIF 243 (260)
T ss_pred HHHHH
Confidence 87763
No 146
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=358.56 Aligned_cols=219 Identities=25% Similarity=0.352 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC---CCceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA---CKATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++||++.|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+..+ .+++|+|+++|+++.. .
T Consensus 19 ~l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 19 KMRARDVSVFYG--EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred eEEEEeEEEEEC--CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 588999999994 46799999999999999999999999999999999998753 2478999999987631 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.|+||+|++.+++. ||.||+.++...+.. .....+..++++++++.+||.+ ..++.++ .||||||
T Consensus 97 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSgGq~ 169 (267)
T PRK14235 97 ELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEPGT-----GLSGGQQ 169 (267)
T ss_pred HHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCCcc-----cCCHHHH
Confidence 356789999999988874 999999987543210 0122233456788999999964 3344444 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+.+|++++|.+ |+++..|++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~-~~~~~d~v~~l~~-G~i~~~g~~ 246 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQ-AARVSQRTAFFHL-GNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHH-HHhhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 7899999999875 4578999999986 578899988
Q ss_pred hhH
Q 001270 729 KKV 731 (1111)
Q Consensus 729 ~~l 731 (1111)
+++
T Consensus 247 ~~~ 249 (267)
T PRK14235 247 EKM 249 (267)
T ss_pred HHH
Confidence 765
No 147
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-40 Score=355.29 Aligned_cols=213 Identities=27% Similarity=0.412 Sum_probs=181.1
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 576 (1111)
..|+++||+++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+.. +.+|+|.++|.++. ...+++
T Consensus 2 ~~l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~ 77 (241)
T PRK14250 2 NEIEFKEVSYSSF--GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDVIDLRR 77 (241)
T ss_pred ceEEEEeEEEEeC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcChHHhhh
Confidence 3588999999994 4579999999999999999999999999999999999764 68999999998753 224567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
.++|++|++.+++ .||+||+.+..... . . ...+++++++.+||. +..++.+. .|||||||||+|||
T Consensus 78 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~qrl~la~ 144 (241)
T PRK14250 78 KIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRDVK-----NLSGGEAQRVSIAR 144 (241)
T ss_pred cEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCCcc-----cCCHHHHHHHHHHH
Confidence 8999999998886 69999998754321 1 1 123567889999996 45666655 49999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |+++..|+++++
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 219 (241)
T PRK14250 145 TLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ-AKRIGDYTAFLNK-GILVEYAKTYDF 219 (241)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH-HHHhCCEEEEEeC-CEEEEeCCHHHH
Confidence 999999999999999999999999999999998764 9999999999975 4578999999987 578889988765
No 148
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-39 Score=363.53 Aligned_cols=219 Identities=23% Similarity=0.363 Sum_probs=182.1
Q ss_pred EEEEEeEEEEEcCCc---ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC-------
Q 001270 501 EVSFKDLTLTLKGKN---KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP------- 570 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~---k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~------- 570 (1111)
.|+++||+++|+++. +.+|+||||+|++||+++|+||||||||||+++|+|++. +.+|+|.++|+++.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEccccccccc
Confidence 588999999995422 359999999999999999999999999999999999765 58899999998752
Q ss_pred -cccccccEEEEccCCC--CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHH
Q 001270 571 -IHSYKKIIGFVPQDDI--VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGG 646 (1111)
Q Consensus 571 -~~~~r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGG 646 (1111)
...+++.|+||+|++. ++ ..||+||+.|..... .....+....++++++.++|. +..++.+++ ||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~-----LS~G 154 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPFE-----LSGG 154 (289)
T ss_pred cHHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChhh-----CCHH
Confidence 1235678999999973 34 469999998865321 122233334578899999994 567776655 9999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEe
Q 001270 647 QRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYH 725 (1111)
Q Consensus 647 QrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~ 725 (1111)
|||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~-~~~~~d~i~~l~~-G~i~~~ 232 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ-VLRIADEVIVMHE-GKVISI 232 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999998764 8999999999874 5688999999986 578899
Q ss_pred cCHhhHH
Q 001270 726 GSVKKVE 732 (1111)
Q Consensus 726 G~~~~l~ 732 (1111)
|+++++.
T Consensus 233 g~~~~~~ 239 (289)
T PRK13645 233 GSPFEIF 239 (289)
T ss_pred CCHHHHh
Confidence 9987763
No 149
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=8.6e-40 Score=350.08 Aligned_cols=210 Identities=25% Similarity=0.403 Sum_probs=181.3
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 581 (1111)
|+++|++++|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|++. +.+|+|.++|++..... ++.++|+
T Consensus 1 l~l~~v~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFG--KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSL 75 (223)
T ss_pred CEEEeEEEEEC--CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEE
Confidence 46899999994 4679999999999999999999999999999999999764 68999999998764322 3579999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 001270 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEP 661 (1111)
Q Consensus 582 ~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P 661 (1111)
+|++.+++.+||+||+.+...... .. ...+.++++.+||++..++.+.+ ||||||||++|||||+.+|
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKAKQ-----FSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhHhh-----CCHHHHHHHHHHHHHhcCC
Confidence 999999988999999987654321 11 12467889999999888877765 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 662 SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 662 ~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSE-VQQLADHIGIISE-GVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHHhcCEEEEEeC-CEEEEecChhh
Confidence 9999999999999999999999999998779999999999875 5578999999986 57888888753
No 150
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-40 Score=347.75 Aligned_cols=209 Identities=30% Similarity=0.458 Sum_probs=174.7
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGF 580 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 580 (1111)
|+++|++++|+ ++. .|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ...++.+||
T Consensus 1 i~~~~l~~~~~--~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYG--EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSM 74 (211)
T ss_pred CEEEeEEEEeC--CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEE
Confidence 46899999994 333 39999999999999999999999999999999865 688999999987632 223567999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
++|++.+++.+||+||+.+...... .. ..+..+.++++++.+||.+..++.+.+ |||||||||+|||||+.+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~ia~al~~~ 146 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPGE-----LSGGERQRVALARVLVRD 146 (211)
T ss_pred EecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCccc-----CCHHHHHHHHHHHHHhcC
Confidence 9999999999999999987643211 11 112334678899999998877877654 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
|++|||||||+|||+.++..+++.|++++++ |.|||++||+++. +.+.+|++++|.+| ++++.|
T Consensus 147 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~G-~i~~~~ 211 (211)
T cd03298 147 KPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED-AKRLAQRVVFLDNG-RIAAQG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHhhhCEEEEEECC-EEeecC
Confidence 9999999999999999999999999998754 8999999999875 45789999999874 666543
No 151
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=353.48 Aligned_cols=219 Identities=23% Similarity=0.338 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++|++++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+..+. +++|+|.++|+++.. .
T Consensus 4 ~l~~~nl~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 4 KVKLEQLNVHFG--KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred EEEEEEEEEEeC--CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 378999999994 467999999999999999999999999999999999986421 368999999987531 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.|+||||++.+++.+||+||+.++..... .....+...+++++++.+|+.. ..++.+ ..||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~~ 154 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKSNA-----MELSGGQQ 154 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc-----CcCCHHHH
Confidence 357789999999999998999999987644221 1122233345788899999864 234444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++. +.+.+|++++|.+ |+++..|+.
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQ-AARVSDYTAFFYM-GDLVECGET 231 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHH-HHhhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999875 6899999999875 4588999999976 578899998
Q ss_pred hhH
Q 001270 729 KKV 731 (1111)
Q Consensus 729 ~~l 731 (1111)
+++
T Consensus 232 ~~~ 234 (252)
T PRK14256 232 KKI 234 (252)
T ss_pred HHH
Confidence 765
No 152
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.7e-39 Score=368.50 Aligned_cols=226 Identities=23% Similarity=0.345 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEcC--CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC-CceeEEEECCeeCCc---cc-
Q 001270 501 EVSFKDLTLTLKG--KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC-KATGLILINGKNEPI---HS- 573 (1111)
Q Consensus 501 ~L~~~nLs~~y~~--~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~---~~- 573 (1111)
.|+++||++.|.. +...+|+||||+|++||++||+|+||||||||+++|+|++.+. ..+|+|.++|+++.. ..
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 4889999999953 2357999999999999999999999999999999999987531 138999999998632 11
Q ss_pred --cc-ccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 001270 574 --YK-KIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 574 --~r-~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQr 648 (1111)
+| +.|+||||++ .+.+.+||.+++.+...... .....+..+++.++++.+||.+..+. .+ ..+++||||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~~-~~p~~LSgG~~ 167 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-MK-MYPHEFSGGMR 167 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-hc-CCcccCCHHHH
Confidence 22 4799999998 68889999999987654321 23344445678889999999753211 11 23456999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
|||+|||||+.+|+|||+||||+|||+.++..|+++|+++.++ |.|||+||||++. +.+++|++++|.+ |++++.|+
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~-~~~~~Dri~vm~~-G~ive~g~ 245 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGV-VAGICDKVLVMYA-GRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEECC
Confidence 9999999999999999999999999999999999999999765 9999999999975 4578999999976 58999999
Q ss_pred HhhHH
Q 001270 728 VKKVE 732 (1111)
Q Consensus 728 ~~~l~ 732 (1111)
++++.
T Consensus 246 ~~~i~ 250 (330)
T PRK09473 246 ARDVF 250 (330)
T ss_pred HHHHH
Confidence 98874
No 153
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.2e-39 Score=373.11 Aligned_cols=209 Identities=31% Similarity=0.471 Sum_probs=180.4
Q ss_pred eEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-------ccccccE
Q 001270 506 DLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-------HSYKKII 578 (1111)
Q Consensus 506 nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~r~~I 578 (1111)
||+++|+ ++. + |+||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ...++.|
T Consensus 4 ~l~~~~~--~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i 77 (354)
T TIGR02142 4 RFSKRLG--DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRI 77 (354)
T ss_pred EEEEEEC--CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCe
Confidence 7889994 344 4 9999999999999999999999999999999765 588999999987531 1346789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
+||+|++.+++++||+||+.|+.... ...+..++++++++.+||.+..++.+.+ |||||||||+|||||+
T Consensus 78 ~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 78 GYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALL 147 (354)
T ss_pred EEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHH
Confidence 99999999999999999999875421 1123344678999999999888887765 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++. +..++|++++|.+ |+++..|+++++.
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~~ 220 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQE-VLRLADRVVVLED-GRVAAAGPIAEVW 220 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEeC-CEEEEECCHHHHh
Confidence 999999999999999999999999999999865 8999999999975 5678999999987 5788999988764
No 154
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-40 Score=391.36 Aligned_cols=222 Identities=22% Similarity=0.338 Sum_probs=188.2
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc----cccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH----SYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~----~~r~ 576 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||||+|+|+..+.+++|+|.++|+++... ..++
T Consensus 5 ~l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFG--GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeC--CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 488999999994 4679999999999999999999999999999999999875334799999999876421 1346
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.+|||+|++.+++.+||+||+.++...+........+..++++++++.+||.+..++.+++ |||||||||+||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGqkqrv~la~a 157 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGN-----LGLGQQQLVEIAKA 157 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhh-----CCHHHHHHHHHHHH
Confidence 7999999999999999999999875422100112223345678999999998888887765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~~~ 230 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNE-VKAISDTICVIRD-GRHIGTRPAAGM 230 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH-HHHhcCEEEEEEC-CEEeeecccccC
Confidence 999999999999999999999999999999998789999999999875 4578999999986 578899987764
No 155
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.4e-39 Score=374.63 Aligned_cols=207 Identities=24% Similarity=0.354 Sum_probs=179.1
Q ss_pred CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCee----CC---cc---cc-cccEEEEc
Q 001270 514 KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN----EP---IH---SY-KKIIGFVP 582 (1111)
Q Consensus 514 ~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~----~~---~~---~~-r~~IgyV~ 582 (1111)
+...+|+||||+|++||+++|+|+||||||||+++|+|++. +++|+|+++|++ +. .. .+ ++.|+|||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 34578999999999999999999999999999999999775 688999999963 21 11 12 25799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCC
Q 001270 583 QDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPS 662 (1111)
Q Consensus 583 Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~ 662 (1111)
|++.+++++||+||+.++.... .....+...+++++++.+||.+..++.+++ |||||||||+|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~~-----LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPGE-----LSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986432 233444556788999999999888888765 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 663 LLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 663 lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||||||||+|||+.++..+.+.|+++.++ |+|||++|||+++ +.+++|++++|.+ |+++..|+++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e-~~~l~DrI~vl~~-G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE-ALKIGNRIAIMEG-GRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEecCHHHHh
Confidence 99999999999999999999999999765 9999999999985 4689999999987 5789999998773
No 156
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-41 Score=341.41 Aligned_cols=219 Identities=26% Similarity=0.413 Sum_probs=193.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC----------
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---------- 570 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---------- 570 (1111)
.|+++||.++| +...+|++||++..+|+++.|||.|||||||+|++|.-+.. |..|.|.+||+.+.
T Consensus 6 ~l~v~dlHK~~--G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 6 ALEVEDLHKRY--GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred ceehhHHHhhc--ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCee
Confidence 57889999999 66789999999999999999999999999999999998654 68899999997531
Q ss_pred ------cccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 001270 571 ------IHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGIS 644 (1111)
Q Consensus 571 ------~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLS 644 (1111)
...+|.+.|+|||+.+++.+|||.||+.-+...- .+.++.+..++++.+|+.+||.+..+.++.. ||
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~-----LS 154 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYPAH-----LS 154 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCccc-----cC
Confidence 1124668999999999999999999997653322 2456777778899999999999999988765 99
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEE
Q 001270 645 GGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVY 724 (1111)
Q Consensus 645 GGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~ 724 (1111)
|||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|++++||.+.++ .+...++++|.+ |.+-+
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FA-R~Vss~v~fLh~-G~iEE 232 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFA-RDVSSHVIFLHQ-GKIEE 232 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHH-HhhhhheEEeec-ceecc
Confidence 9999999999999999999999999999999999999999999999999999999999875 477889999986 58889
Q ss_pred ecCHhhHH
Q 001270 725 HGSVKKVE 732 (1111)
Q Consensus 725 ~G~~~~l~ 732 (1111)
+|+++++.
T Consensus 233 ~G~P~qvf 240 (256)
T COG4598 233 EGPPEQVF 240 (256)
T ss_pred cCChHHHh
Confidence 99998863
No 157
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=358.86 Aligned_cols=219 Identities=26% Similarity=0.372 Sum_probs=181.4
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC---CCceeEEEECCeeCC-----c
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA---CKATGLILINGKNEP-----I 571 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~-----~ 571 (1111)
..|+++||+++|+ .+.+|+|+||+|++||+++|+|||||||||||++|+|+..+ .+++|+|.++|+++. .
T Consensus 12 ~~l~i~nl~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYG--TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEEC--CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 4689999999994 46799999999999999999999999999999999997642 147899999998753 1
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHH
Q 001270 572 HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ----TVRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 572 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~----~~~d~~vg~~~~rgLSGGQ 647 (1111)
..+++.++||+|++.+++ .||+||+.+....+. ... ...+.++++++.+++. +..++.+ +.|||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS~G~ 159 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNESG-----YSLSGGQ 159 (269)
T ss_pred HHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCCc-----ccCCHHH
Confidence 235678999999998887 499999998764321 111 2234567788888774 3345544 4599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeC---------
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAK--------- 718 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~--------- 718 (1111)
||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++. +.+.+|++++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~-~~~~~d~i~~l~~~~~~~~~~g 237 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQ-AVRVSDMTAFFNAEEVEGGSGG 237 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhcCEEEEEecccccccccc
Confidence 9999999999999999999999999999999999999999854 7899999999975 5689999999986
Q ss_pred -CcEEEEecCHhhHH
Q 001270 719 -GGLTVYHGSVKKVE 732 (1111)
Q Consensus 719 -GG~iv~~G~~~~l~ 732 (1111)
.|+++++|+++++.
T Consensus 238 ~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 238 KVGYLVEFNETKKIF 252 (269)
T ss_pred ccceEEEeCCHHHHH
Confidence 25789999998874
No 158
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=353.00 Aligned_cols=218 Identities=27% Similarity=0.321 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC---ceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACK---ATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~---~sG~I~inG~~~~~-----~ 572 (1111)
.|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+....+ ++|+|.++|+++.. .
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYN--KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEEC--CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 478999999994 4579999999999999999999999999999999999753223 58999999987531 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.++||+|++.+++ +||+||+.++..... ..........++++++.+|+.. ..++.++ .||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LS~G~~ 154 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSAL-----GLSGGQQ 154 (252)
T ss_pred hhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcc-----cCCHHHH
Confidence 34678999999998886 899999998754221 1112223345778889998743 3445444 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||+++. +.+.+|++++|.+ |++++.|+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQ-ASRISDRTGFFLD-GDLIEYNDT 231 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 6899999999874 5678999999987 578899998
Q ss_pred hhH
Q 001270 729 KKV 731 (1111)
Q Consensus 729 ~~l 731 (1111)
+++
T Consensus 232 ~~~ 234 (252)
T PRK14239 232 KQM 234 (252)
T ss_pred HHH
Confidence 776
No 159
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=4.5e-40 Score=355.08 Aligned_cols=219 Identities=23% Similarity=0.454 Sum_probs=174.1
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccccE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 578 (1111)
|+++||++.|+.+.+.+|+|+||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++. ...+++.+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i 78 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPAWLRRQV 78 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHHHHhhcE
Confidence 46899999996444679999999999999999999999999999999999865 57899999998753 22356789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTL--GLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~L--GL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
+|++|++.+++ .||.||+.+..................++++++.+ ++.+..++.+. .|||||||||+||||
T Consensus 79 ~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-----~LSgG~~qrv~lara 152 (237)
T cd03252 79 GVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGA-----GLSGGQRQRIAIARA 152 (237)
T ss_pred EEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCC-----cCCHHHHHHHHHHHH
Confidence 99999988774 69999998753211000011111111234455555 55555555554 499999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||+++. + ..+|++++|.+ |++++.|+++++.
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~~~~~~~~~ 224 (237)
T cd03252 153 LIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLST-V-KNADRIIVMEK-GRIVEQGSHDELL 224 (237)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 999999999999999999999999999999986 48999999999975 3 56999999987 5788999987764
No 160
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=372.67 Aligned_cols=208 Identities=31% Similarity=0.480 Sum_probs=180.3
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-------ccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-------HSY 574 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~ 574 (1111)
|++ ||+++|+ ++. + ||||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ...
T Consensus 2 l~~-~l~k~~~--~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~ 74 (352)
T PRK11144 2 LEL-NFKQQLG--DLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPE 74 (352)
T ss_pred eEE-EEEEEeC--CEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchh
Confidence 455 8999994 333 3 9999999999999999999999999999999765 689999999987531 234
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 001270 575 KKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVG 654 (1111)
Q Consensus 575 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIA 654 (1111)
++.||||+|++.+++++||+||+.|+... ...++++++++.+||.+..++.+.+ |||||||||+||
T Consensus 75 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~---------~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qRvala 140 (352)
T PRK11144 75 KRRIGYVFQDARLFPHYKVRGNLRYGMAK---------SMVAQFDKIVALLGIEPLLDRYPGS-----LSGGEKQRVAIG 140 (352)
T ss_pred hCCEEEEcCCcccCCCCcHHHHHHhhhhh---------hhHHHHHHHHHHcCCchhhhCCccc-----CCHHHHHHHHHH
Confidence 67899999999999999999999986431 1124578899999999888887765 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 655 LEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 655 rALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++. +.+++|++++|.+ |+++..|+++++.
T Consensus 141 raL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~-~~~~~d~i~~l~~-G~i~~~g~~~~i~ 217 (352)
T PRK11144 141 RALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDE-ILRLADRVVVLEQ-GKVKAFGPLEEVW 217 (352)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH-HHHhCCEEEEEeC-CEEEEecCHHHHH
Confidence 9999999999999999999999999999999999765 8999999999974 5689999999986 5789999998874
No 161
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=9.5e-40 Score=402.85 Aligned_cols=212 Identities=25% Similarity=0.405 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||+|+|++.++.+|+|+||+|++||.+||+|+||||||||+|+|+|++. |.+|+|++||+++. ...+|+.
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcCcCCHHHHHhc
Confidence 689999999997555789999999999999999999999999999999999775 68999999999863 4568899
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-------VRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-------~~d~~vg~~~~rgLSGGQrQR 650 (1111)
||||+|++.+|+. |++|||.++.+ . +. +.+.++++..|+.+ -.|+.+|+ ....||||||||
T Consensus 529 i~~v~Q~~~lf~g-TI~eNi~~~~~-~-----~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGGQrQR 596 (686)
T TIGR03797 529 LGVVLQNGRLMSG-SIFENIAGGAP-L-----TL----DEAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGGQRQR 596 (686)
T ss_pred cEEEccCCccCcc-cHHHHHhcCCC-C-----CH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHH
Confidence 9999999999864 99999998643 1 11 12445555555543 24566765 456799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
++|||||+++|+|||||||||+||+.+++.+.+.|+++ ++|+|+|||+++. .+.+|++++|++ |++++.|+.++
T Consensus 597 ialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~--i~~~D~Iivl~~-G~iv~~G~~~~ 670 (686)
T TIGR03797 597 LLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST--IRNADRIYVLDA-GRVVQQGTYDE 670 (686)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH--HHcCCEEEEEEC-CEEEEECCHHH
Confidence 99999999999999999999999999999999999876 5899999999864 478999999986 58999999988
Q ss_pred HH
Q 001270 731 VE 732 (1111)
Q Consensus 731 l~ 732 (1111)
+.
T Consensus 671 Ll 672 (686)
T TIGR03797 671 LM 672 (686)
T ss_pred HH
Confidence 75
No 162
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-39 Score=357.97 Aligned_cols=219 Identities=20% Similarity=0.321 Sum_probs=185.7
Q ss_pred EEEEEeEEEEEcCC-cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccc
Q 001270 501 EVSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~-~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 576 (1111)
.|+++||+++|++. .+.+|+||||+|++||+++|+|+||||||||+++|+|+.. +.+|+|.++|+++.. ..+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCHHHHhc
Confidence 47899999999632 2459999999999999999999999999999999999875 688999999987642 24567
Q ss_pred cEEEEccCCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 577 IIGFVPQDDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 577 ~IgyV~Qd~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
.||||+|++. +++..||.|||.++.... .....+..++++++++.+||.+..++.+.+ |||||||||+|||
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lAr 153 (277)
T PRK13642 82 KIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPAR-----LSGGQKQRVAVAG 153 (277)
T ss_pred ceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHHHH
Confidence 8999999974 566789999998865421 122333345678999999998887777654 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||+++.. ..+|++++|++ |+++..|+++++.
T Consensus 154 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~--~~~d~i~~l~~-G~i~~~g~~~~~~ 228 (277)
T PRK13642 154 IIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA--ASSDRILVMKA-GEIIKEAAPSELF 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HhCCEEEEEEC-CEEEEeCCHHHHh
Confidence 999999999999999999999999999999999875 99999999999863 46999999987 4788999988763
No 163
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-39 Score=348.65 Aligned_cols=217 Identities=29% Similarity=0.415 Sum_probs=185.1
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGF 580 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 580 (1111)
|+++||+++|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|+++.. ...++.++|
T Consensus 1 l~~~~l~~~~~--~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYG--GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRPVNT 76 (232)
T ss_pred CEEEeEEEEeC--CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcceEE
Confidence 46899999994 4679999999999999999999999999999999999775 578999999987642 223578999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
++|++.+++.+||.||+.+....+. .......+.++++++.+||.+..++.+.+ |||||||||+|||||+.+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----lS~G~~qrl~laral~~~ 148 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKPSQ-----LSGGQQQRVAIARALVNE 148 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcC
Confidence 9999999988999999988654321 12223344678899999999888877754 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+++. +.+.+|++++|.+ |++++.|+.+++.
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~-~~~~~d~i~~l~~-G~~~~~~~~~~~~ 219 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE-ALTMSDRIAVMNK-GKIQQIGTPEEIY 219 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEecCCHHHHH
Confidence 9999999999999999999999999998865 8999999999875 4678999999986 5788888876653
No 164
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.9e-40 Score=395.37 Aligned_cols=223 Identities=29% Similarity=0.476 Sum_probs=189.1
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC---Ccccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE---PIHSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~r~ 576 (1111)
.+|+++||+|.|++ ++.+|+|+||+|++||.+||+||||||||||+++|.|++. +.+|+|++||+++ +...+|+
T Consensus 327 ~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~dI~~i~~~~lr~ 403 (567)
T COG1132 327 GSIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGIDIRDISLDSLRK 403 (567)
T ss_pred CeEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEehhhcCHHHHHH
Confidence 45999999999953 5689999999999999999999999999999999999765 5899999999885 3457899
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.||||+||+.+|. -||+|||.++.+...++.+.++.+.+.+++.+..+ .+-.|+.+|+ .+..||||||||++||||
T Consensus 404 ~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge-~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 404 RIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVGE-RGVNLSGGQRQRLAIARA 479 (567)
T ss_pred hccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--cccccceecC-CCccCCHHHHHHHHHHHH
Confidence 9999999999997 69999999986533333344444444556666665 3345778884 456799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
|+++|+||+||||||+||+.++..|.+.++++. +++|+|+|+|+++. .+.+|+|++|++| ++++.|+.+++..
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~IiVl~~G-~i~e~G~h~eLl~ 552 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADRIIVLDNG-RIVERGTHEELLA 552 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCEEEEEECC-EEEEecCHHHHHH
Confidence 999999999999999999999999999999876 67899999999964 3669999999875 7999999999864
No 165
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.4e-39 Score=394.65 Aligned_cols=221 Identities=27% Similarity=0.388 Sum_probs=179.7
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 576 (1111)
..|+++||++.|.+ ++.+|+|+||+|++||.+||+||||||||||+++|+|++ |.+|+|++||+++. ...+|+
T Consensus 348 ~~i~~~~vsf~~~~-~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~---p~~G~I~i~g~~i~~~~~~~lr~ 423 (588)
T PRK11174 348 VTIEAEDLEILSPD-GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL---PYQGSLKINGIELRELDPESWRK 423 (588)
T ss_pred ceEEEEeeEEeccC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCcEEEECCEecccCCHHHHHh
Confidence 36899999986643 467999999999999999999999999999999999976 36899999998753 456889
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.|+||+|++.+|. .|++|||.++.+...++.+.+..+...+++.++.+ .+-.|+.+|+ ....||||||||++||||
T Consensus 424 ~i~~v~Q~~~LF~-~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~l--p~G~dT~vge-~G~~LSGGQrQRialARA 499 (588)
T PRK11174 424 HLSWVGQNPQLPH-GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLL--PQGLDTPIGD-QAAGLSVGQAQRLALARA 499 (588)
T ss_pred heEEecCCCcCCC-cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhc--cccccccccc-CCCCCCHHHHHHHHHHHH
Confidence 9999999999996 49999999974322112222222223334444443 2234667776 345699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+++|+|||||||||+||+.++..|.+.|+++. +++|+|++||+++. .+.+|++++|++ |++++.|+.+++.
T Consensus 500 ll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~--i~~aD~Iivl~~-G~i~e~G~~~eL~ 571 (588)
T PRK11174 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED--LAQWDQIWVMQD-GQIVQQGDYAELS 571 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHH--HHhCCEEEEEeC-CeEeecCCHHHHH
Confidence 999999999999999999999999999998875 58999999999863 478999999986 5889999988875
No 166
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.8e-39 Score=349.92 Aligned_cols=217 Identities=30% Similarity=0.455 Sum_probs=185.5
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGF 580 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 580 (1111)
|+++|+++.|+ .+.+|+|+||+|.+||+++|+||||||||||+++|+|++. +.+|+|.++|.++.. ...++.++|
T Consensus 1 i~i~~l~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFG--SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGF 76 (237)
T ss_pred CEEEEEEEEEC--CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEE
Confidence 46899999994 4679999999999999999999999999999999999764 578999999987642 234578999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
++|++.+++.+|+.||+.+....+ ........+.++++++.+++.+..++.+++ |||||+||++|||+|+.+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPNQ-----LSGGQRQRVALARALAVE 148 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhh-----CCHHHHHHHHHHHHHhcC
Confidence 999999999999999998865432 112223334678899999998877877655 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+++||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|+.+++.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~-~~~~~d~i~~l~~-g~i~~~~~~~~~~ 219 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE-AMEVADRIVVMSN-GKIEQIGSPDEVY 219 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHhhcCEEEEEEC-CEEEEecCHHHHH
Confidence 9999999999999999999999999998775 8999999999874 4578999999986 5788999987763
No 167
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-39 Score=349.38 Aligned_cols=215 Identities=27% Similarity=0.413 Sum_probs=181.2
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGF 580 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 580 (1111)
|+++||+++|++ + ..||||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ...++.++|
T Consensus 2 l~~~~l~~~~~~--~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH--L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPSRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC--c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChhhccEEE
Confidence 678999999952 2 249999999999999999999999999999999765 688999999987532 123467999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
++|++.+++.+||.||+.+...... ... .....+++++++.+||.+..++.+.+ |||||||||+|||||+.+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~ 147 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGL--KLN-AAQREKLHAIARQMGIEDLLARLPGQ-----LSGGQRQRVALARCLVRE 147 (232)
T ss_pred EecccccccCCcHHHHHhccccccc--CCC-HHHHHHHHHHHHHcCcHHHHhCCccc-----CCHHHHHHHHHHHHHhcC
Confidence 9999999999999999987532111 111 12344678899999998888887765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |++++.|+.+++.
T Consensus 148 p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-g~i~~~g~~~~~~ 218 (232)
T PRK10771 148 QPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED-AARIAPRSLVVAD-GRIAWDGPTDELL 218 (232)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 9999999999999999999999999998764 8999999999974 4578999999986 5788999887654
No 168
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=353.45 Aligned_cols=219 Identities=25% Similarity=0.327 Sum_probs=180.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC---ceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACK---ATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~---~sG~I~inG~~~~~-----~ 572 (1111)
.|+++|+++.|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+..+.+ ++|+|.++|+++.. .
T Consensus 12 ~l~i~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYG--QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEEC--CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 489999999994 4579999999999999999999999999999999999864212 58999999987531 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.|||++|++.+++. ||+||+.+...... .....+...+++++++.+|+.+ ..++.+ +.||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~-----~~LS~Gq~ 161 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA-----LSLSGGQQ 161 (259)
T ss_pred HHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCCc-----ccCCHHHH
Confidence 356789999999988875 99999988653221 1122233445778899999853 334444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||+++. +.+.+|++++|.+ |+++..|++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~-~~~~~d~i~~l~~-G~i~~~g~~ 238 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQ-AARVSDQTAFFYM-GELVECNDT 238 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHH-HHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999999864 7899999999874 5678999999976 588999998
Q ss_pred hhHH
Q 001270 729 KKVE 732 (1111)
Q Consensus 729 ~~l~ 732 (1111)
+++.
T Consensus 239 ~~~~ 242 (259)
T PRK14274 239 NKMF 242 (259)
T ss_pred HHHh
Confidence 8763
No 169
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.1e-39 Score=357.03 Aligned_cols=221 Identities=19% Similarity=0.314 Sum_probs=183.4
Q ss_pred EEEEEeEEEEEcCC-------cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--
Q 001270 501 EVSFKDLTLTLKGK-------NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-- 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~-------~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-- 571 (1111)
.|+++||+++|++. .+.+|+||||+|++||+++|+|||||||||||++|+|++. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCc
Confidence 37899999999521 2469999999999999999999999999999999999765 689999999987642
Q ss_pred -ccccccEEEEccCCC--CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHH
Q 001270 572 -HSYKKIIGFVPQDDI--VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 572 -~~~r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQ 647 (1111)
...++.++||+|++. +++.+||.|++.+...... .....+..+.++++++.+||. +..++.+.+ |||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LS~G~ 154 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPHM-----LAPGQ 154 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCchh-----cCHHH
Confidence 123457999999975 5678899999988654321 122233345678899999994 556666554 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||+++. +..++|++++|.+ |++++.|
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~-~~~~~d~i~~l~~-G~i~~~~ 232 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGM-MKHISDQVLVMHQ-GEVVERG 232 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999999764 8999999999975 5578999999986 5788989
Q ss_pred CHhhHH
Q 001270 727 SVKKVE 732 (1111)
Q Consensus 727 ~~~~l~ 732 (1111)
+.+++.
T Consensus 233 ~~~~~~ 238 (267)
T PRK15112 233 STADVL 238 (267)
T ss_pred CHHHHh
Confidence 877653
No 170
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-39 Score=350.66 Aligned_cols=218 Identities=26% Similarity=0.384 Sum_probs=179.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC---ceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACK---ATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~---~sG~I~inG~~~~~-----~ 572 (1111)
.|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+..+.+ ++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYG--DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEEC--CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 478999999994 4579999999999999999999999999999999999764222 68999999987532 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.++||+|++.+++ +||+||+.++..... .....+..+.++++++.+++.+ ..++.++ .||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LS~G~~ 152 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSAL-----GLSGGQQ 152 (250)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCC-----CCCHHHH
Confidence 35678999999998887 899999998754221 1112233446778888888742 3455444 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||+++. +.+.+|++++|.+ |++++.|+.
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~-~~~~~d~v~~l~~-G~i~~~~~~ 229 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQ-ASRISDKTAFFLN-GEIVEFGDT 229 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHH-HHhhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999999999985 47899999999874 5678999999987 578899988
Q ss_pred hhH
Q 001270 729 KKV 731 (1111)
Q Consensus 729 ~~l 731 (1111)
+++
T Consensus 230 ~~~ 232 (250)
T PRK14240 230 VDL 232 (250)
T ss_pred HHH
Confidence 765
No 171
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.1e-39 Score=344.38 Aligned_cols=199 Identities=28% Similarity=0.443 Sum_probs=170.5
Q ss_pred EEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---c----ccccc
Q 001270 504 FKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---I----HSYKK 576 (1111)
Q Consensus 504 ~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~----~~~r~ 576 (1111)
++||++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|++. +++|+|.++|+++. . ...++
T Consensus 1 i~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~ 76 (206)
T TIGR03608 1 LKNISKKFG--DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRRE 76 (206)
T ss_pred CcceEEEEC--CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHh
Confidence 368899994 4679999999999999999999999999999999999765 68899999998742 1 12456
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.++|++|++.+++.+||+||+.+..... .....+..+.++++++.+||.+..++.+.+ ||||||||++||||
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----lS~G~~qr~~lara 148 (206)
T TIGR03608 77 KLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIYE-----LSGGEQQRVALARA 148 (206)
T ss_pred CeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChhh-----CCHHHHHHHHHHHH
Confidence 8999999999999999999999865432 122333345678999999998888877755 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEE
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLL 716 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL 716 (1111)
|+.+|++|||||||+|||+.++..+.+.|+++.++|.|||++||++.. .+.+|++++|
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~--~~~~d~i~~l 206 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV--AKQADRVIEL 206 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--HhhcCEEEeC
Confidence 999999999999999999999999999999988779999999999863 3689998875
No 172
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.8e-39 Score=344.03 Aligned_cols=210 Identities=26% Similarity=0.387 Sum_probs=177.3
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGF 580 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 580 (1111)
++++||++.|+ .+++|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ..+++.++|
T Consensus 1 ~~~~~l~~~~~----~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYE----HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeC----CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEE
Confidence 36899999994 25789999999999999999999999999999999765 689999999987532 235678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
|+|++.+++.+|+.||+.+...... .... .....++++++.+||.+..++.+.+ |||||||||+|||||+.+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~--~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~~ 146 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGL--KLNA-EQQEKVVDAAQQVGIADYLDRLPEQ-----LSGGQRQRVALARCLVRP 146 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccC--CccH-HHHHHHHHHHHHcCcHHHhhCCccc-----CCHHHHHHHHHHHHHhcC
Confidence 9999999999999999987543211 1111 2234578899999998877877755 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++. +.+.+|++++|.+ |++++.|+
T Consensus 147 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~-~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 147 NPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD-ARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHhhcCeEEEEEC-CeEEEecC
Confidence 9999999999999999999999999998764 8999999999875 4578999999976 57777764
No 173
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-39 Score=350.59 Aligned_cols=218 Identities=26% Similarity=0.334 Sum_probs=180.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+..+. +++|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYG--EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEEC--CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 478999999994 467999999999999999999999999999999999976532 378999999987632 1
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
..++.+||++|++.+++ +|++||+.|...... .....+...+++++++.+||.+ ..++.+ +.||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~~ 153 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKSA-----LKLSGGQQ 153 (251)
T ss_pred HHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCc-----ccCCHHHH
Confidence 34678999999998887 899999998754321 0112233345778899998842 344444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.+.+|++++|.+ |++++.|++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~-~~~~~d~v~~l~~-G~i~~~~~~ 230 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQ-ASRVSDYTAFFLM-GDLIEFNKT 230 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHH-HHHhcCEEEEEEC-CeEEEeCCH
Confidence 999999999999999999999999999999999999999876 5899999999874 5678999999986 578899998
Q ss_pred hhH
Q 001270 729 KKV 731 (1111)
Q Consensus 729 ~~l 731 (1111)
+++
T Consensus 231 ~~~ 233 (251)
T PRK14270 231 EKI 233 (251)
T ss_pred HHH
Confidence 876
No 174
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-39 Score=347.72 Aligned_cols=216 Identities=27% Similarity=0.453 Sum_probs=184.0
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGF 580 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 580 (1111)
|+++|+++.|++ ++|+|+||+|++||+++|+|+||||||||+++|+|+.. +.+|+|.++|.+... ...++.++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEE
Confidence 467899999942 38999999999999999999999999999999999765 688999999987642 223578999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
++|++.+++.+||.||+.+..... .....+..+.+.++++.+||.+..++.+.+ |||||||||+|||||+.+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~~ 147 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPET-----LSGGEQQRVAIARALVVN 147 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCccc-----CCHHHHHHHHHHHHHHcC
Confidence 999999998999999998865322 122233344577899999998888887765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|++|+|||||+|||+.++..+.+.|++++.+ |.|||++||++.. +.+.+|++++|.+ |++++.|+.+++.
T Consensus 148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~~ 218 (235)
T cd03299 148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE-AWALADKVAIMLN-GKLIQVGKPEEVF 218 (235)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEecCHHHHH
Confidence 9999999999999999999999999998765 9999999999975 4578999999986 5788999877653
No 175
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-39 Score=353.74 Aligned_cols=220 Identities=25% Similarity=0.327 Sum_probs=182.8
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC---CCceeEEEECCeeCCc-----
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA---CKATGLILINGKNEPI----- 571 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~----- 571 (1111)
..|+++||+++|+ .+.+|+||||+|.+||+++|+|||||||||||++|+|++.+ .+++|+|.++|+++..
T Consensus 19 ~~l~~~nl~~~~~--~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYG--KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEEC--CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 3589999999994 46799999999999999999999999999999999998653 2579999999987632
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHH
Q 001270 572 HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 572 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQ 647 (1111)
..+++.|+||+|++.+++ .||+||+.++.... ....+.+....+.++++.++|.+ ..++.+ +.|||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~-----~~LS~G~ 168 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLHKSA-----LTLSGGQ 168 (267)
T ss_pred HHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCc-----ccCCHHH
Confidence 234678999999998887 69999999865421 11122333456788899999853 344444 4599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||+++. +.+.+|++++|.+ |++++.|+
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~-~~~~~d~i~~l~~-G~i~~~g~ 245 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQ-AARASDYTAFFYL-GDLIEYDK 245 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHH-HHHhcCEEEEEEC-CEEEEeCC
Confidence 999999999999999999999999999999999999999985 47899999999975 5688999999986 57899999
Q ss_pred HhhHH
Q 001270 728 VKKVE 732 (1111)
Q Consensus 728 ~~~l~ 732 (1111)
++++.
T Consensus 246 ~~~~~ 250 (267)
T PRK14237 246 TRNIF 250 (267)
T ss_pred HHHHh
Confidence 87763
No 176
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-39 Score=349.61 Aligned_cols=220 Identities=27% Similarity=0.357 Sum_probs=180.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC---ceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACK---ATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~---~sG~I~inG~~~~~-----~ 572 (1111)
.|+++||++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|++.+.+ .+|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYG--DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEEC--CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 578999999994 4679999999999999999999999999999999999875433 48999999987531 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ----TVRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~----~~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.|+|++|++.+++.+|+.||+.++..... .....+..+.++++++.+++. +..++.++ .||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTPAT-----GLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcc-----cCCHHHH
Confidence 346789999999999998999999987654221 011222234566777777663 33455544 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
||++|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.+.+|++++|.+ |++++.|++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQ-AARVSDTTSFFLV-GDLVEHGPT 231 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999864 7999999999975 5578999999987 478899998
Q ss_pred hhHH
Q 001270 729 KKVE 732 (1111)
Q Consensus 729 ~~l~ 732 (1111)
+++.
T Consensus 232 ~~~~ 235 (252)
T PRK14272 232 DQLF 235 (252)
T ss_pred HHHH
Confidence 7763
No 177
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-39 Score=352.60 Aligned_cols=220 Identities=24% Similarity=0.366 Sum_probs=182.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC-C--ceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC-K--ATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~-~--~sG~I~inG~~~~~-----~ 572 (1111)
.|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+..+. + ++|+|.++|+++.. .
T Consensus 7 ~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYN--TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEEC--CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 578999999994 467999999999999999999999999999999999986532 2 58999999987531 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ----TVRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~----~~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.|+||+|++.+++ +||+||+.++...+. ...+.+..+.++++++.+|+. +..++.+ ..||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS~G~~ 156 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSA-----LGLSGGQQ 156 (259)
T ss_pred hhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCc-----ccCCHHHH
Confidence 34678999999998887 899999988754321 112223334577888988884 3344444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeC----CcEEEE
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAK----GGLTVY 724 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~----GG~iv~ 724 (1111)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.+.+|++++|.+ .|++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~-i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQ-ATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhcCeEEEEeccCCCCceEEE
Confidence 999999999999999999999999999999999999999865 6899999999985 5688999999973 478999
Q ss_pred ecCHhhHH
Q 001270 725 HGSVKKVE 732 (1111)
Q Consensus 725 ~G~~~~l~ 732 (1111)
.|+++++.
T Consensus 235 ~~~~~~~~ 242 (259)
T PRK14260 235 FGVTTQIF 242 (259)
T ss_pred eCCHHHHh
Confidence 99998763
No 178
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-39 Score=349.81 Aligned_cols=218 Identities=26% Similarity=0.366 Sum_probs=179.8
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCC----ccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEP----IHS 573 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~----~~~ 573 (1111)
.|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+..+. +++|+|.++|.++. ...
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYG--ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEEC--CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 478999999994 467999999999999999999999999999999999986532 36899999998753 224
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQrQ 649 (1111)
+++.++|++|++.+++ .||.||+.+...... ...+....+++.++++.+|+.+ ..++.+ ..|||||||
T Consensus 81 ~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~LS~G~~q 152 (249)
T PRK14253 81 LRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKSHA-----FGLSGGQQQ 152 (249)
T ss_pred HHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhcCc-----ccCCHHHHH
Confidence 5678999999998887 899999988653211 0112223345677888888753 334444 459999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+.+|++++|.+ |++++.|+.+
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~~~d~i~~l~~-G~i~~~g~~~ 229 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQ-ARRISDRTAFFLM-GELVEHDDTQ 229 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHH-HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999999999999999875 5899999999874 5678999999987 5788999877
Q ss_pred hH
Q 001270 730 KV 731 (1111)
Q Consensus 730 ~l 731 (1111)
++
T Consensus 230 ~~ 231 (249)
T PRK14253 230 VI 231 (249)
T ss_pred HH
Confidence 65
No 179
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-39 Score=348.80 Aligned_cols=219 Identities=26% Similarity=0.386 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++||++.|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+..+. +.+|+|.++|.++.. .
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYG--EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeC--CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 378999999994 467999999999999999999999999999999999986421 378999999987532 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.++|++|++.+++ +||+||+.+...... ........+.++++++.+|+.+ ..++.+ +.||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~Gq~ 152 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKPG-----TRLSGGQQ 152 (250)
T ss_pred HhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCCh-----hhcCHHHH
Confidence 34678999999998887 899999998654221 1112223345678888889854 244444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.+.+|++++|.+ |+++..|++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQ-AIRIADYIAFMYR-GELIEYGPT 229 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999999999999999999999865 7899999999874 4578999999987 578899998
Q ss_pred hhHH
Q 001270 729 KKVE 732 (1111)
Q Consensus 729 ~~l~ 732 (1111)
+++.
T Consensus 230 ~~~~ 233 (250)
T PRK14262 230 REIV 233 (250)
T ss_pred HHHH
Confidence 7764
No 180
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=386.41 Aligned_cols=220 Identities=24% Similarity=0.413 Sum_probs=187.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc----cccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH----SYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~----~~r~ 576 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++... ..++
T Consensus 4 ~i~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~ 79 (501)
T PRK10762 4 LLQLKGIDKAFP--GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGPKSSQEA 79 (501)
T ss_pred eEEEeeeEEEeC--CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhC
Confidence 378999999994 4679999999999999999999999999999999999765 5789999999876321 1346
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
.+|||+|++.+++.+||+||+.++...... ......+..++++++++.+||.+..++.+++ |||||||||+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~ 154 (501)
T PRK10762 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE-----LSIGEQQMVEIAK 154 (501)
T ss_pred CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhh-----CCHHHHHHHHHHH
Confidence 799999999999999999999986432110 1112223345678999999999888888776 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
||+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||++. +.+++|++++|.+ |+++..|+++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 228 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKE-IFEICDDVTVFRD-GQFIAEREVADL 228 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEeC-CEEEEecCcCcC
Confidence 9999999999999999999999999999999998779999999999975 5588999999986 578888887664
No 181
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-39 Score=357.32 Aligned_cols=219 Identities=29% Similarity=0.424 Sum_probs=182.2
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------eeEEEECCeeCC---
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKA--------TGLILINGKNEP--- 570 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~--------sG~I~inG~~~~--- 570 (1111)
|+++||+++|+ ++.+|+||||+|++||+++|+|||||||||||++|+|++. +. +|+|.++|+++.
T Consensus 2 l~~~nl~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~--p~~~~~~~~~~G~i~~~g~~~~~~~ 77 (272)
T PRK13547 2 LTADHLHVARR--HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT--GGGAPRGARVTGDVTLNGEPLAAID 77 (272)
T ss_pred eEEEEEEEEEC--CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CcccccccCCceEEEECCEEcccCC
Confidence 68899999994 4679999999999999999999999999999999999875 34 899999998753
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 001270 571 IHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 571 ~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQ 649 (1111)
...+++.++||+|++.+++.+||+||+.+....... ......+..+.++++++.+||.+..++.+.+ |||||||
T Consensus 78 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~q 152 (272)
T PRK13547 78 APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTT-----LSGGELA 152 (272)
T ss_pred HHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHH
Confidence 223456799999998766678999999875321100 0111122334678899999998877777655 9999999
Q ss_pred HHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 650 RVHVGLEMV---------MEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 650 RVaIArALl---------~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
||+|||||+ .+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~-~~~~~d~i~~l~~- 230 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL-AARHADRIAMLAD- 230 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEEEC-
Confidence 999999999 599999999999999999999999999998776 8999999999875 5578999999986
Q ss_pred cEEEEecCHhhH
Q 001270 720 GLTVYHGSVKKV 731 (1111)
Q Consensus 720 G~iv~~G~~~~l 731 (1111)
|++++.|+++++
T Consensus 231 G~i~~~g~~~~~ 242 (272)
T PRK13547 231 GAIVAHGAPADV 242 (272)
T ss_pred CeEEEecCHHHH
Confidence 578899998766
No 182
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-39 Score=349.75 Aligned_cols=219 Identities=23% Similarity=0.339 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC--C-CceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA--C-KATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~--~-~~sG~I~inG~~~~~-----~ 572 (1111)
.-+++||++.|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+..+ . +.+|+|.++|+++.. .
T Consensus 5 ~~~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 5 HASVKNLNLWYG--SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEEeeeEEEEEC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 346899999994 46799999999999999999999999999999999998642 1 468999999987531 1
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc----ccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV----RDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~----~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.++||+|++.+++. ||+||+.+....+. ...........+.++++.+||.+. .++.+ +.||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSA-----FELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhcCh-----hhCCHHHH
Confidence 356789999999988875 99999988643221 101122233457788999999652 33433 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||+|+.+|+||||||||+|||+.++..+.+.|+++. +|+|||++||+++. +.+.+|++++|++ |++++.|++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~-~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQ-AKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHH-HHhhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999999999985 48999999999874 4578999999987 578899988
Q ss_pred hhH
Q 001270 729 KKV 731 (1111)
Q Consensus 729 ~~l 731 (1111)
+++
T Consensus 233 ~~~ 235 (251)
T PRK14244 233 QEI 235 (251)
T ss_pred HHH
Confidence 765
No 183
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-39 Score=343.08 Aligned_cols=202 Identities=30% Similarity=0.454 Sum_probs=171.5
Q ss_pred eEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-------ccccccE
Q 001270 506 DLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-------HSYKKII 578 (1111)
Q Consensus 506 nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~r~~I 578 (1111)
||+++|+ ++.+ ||||+|++ |+++|+||||||||||+++|+|++. +.+|+|.++|.++.. ...++.+
T Consensus 5 ~l~~~~~--~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 5 DIEKRLP--DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred eeeEecC--Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcE
Confidence 8999994 3444 99999999 9999999999999999999999765 689999999987531 1245689
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
+|++|++.+++.+|++||+.+..... ......++++++++.+|+.+..++.+.+ |||||||||+|||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~ 147 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPAQ-----LSGGEKQRVALARALA 147 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCccc-----CCHHHHHHHHHHHHHh
Confidence 99999999998999999998865321 1122334678899999998877777655 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+| ++++.|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G-~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE-AEYLADRIVVMEDG-RLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH-HHHhcCEEEEEECC-EEEecC
Confidence 999999999999999999999999999999865 8999999999875 45789999999874 676654
No 184
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=334.53 Aligned_cols=215 Identities=30% Similarity=0.446 Sum_probs=190.7
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 581 (1111)
+.+++++.+|.+..+.+|+|||++|.+||.++++||||||||||||+++|+.. |..|+|.+||+++.-.. ..-|.|
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPg--aergvV 79 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPG--AERGVV 79 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCC--ccceeE
Confidence 56788999997766679999999999999999999999999999999999775 68899999999875332 335899
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 001270 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEP 661 (1111)
Q Consensus 582 ~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P 661 (1111)
||++.++|.+||.||++|+.+++ ++.++++.+++.+++..+||++..++++-+ |||||||||.|||||+.+|
T Consensus 80 FQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~q-----LSGGmrQRvGiARALa~eP 151 (259)
T COG4525 80 FQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQ-----LSGGMRQRVGIARALAVEP 151 (259)
T ss_pred eccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceEe-----ecchHHHHHHHHHHhhcCc
Confidence 99999999999999999999876 577888889999999999999998888765 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCC-cEEEEecCHh
Q 001270 662 SLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKG-GLTVYHGSVK 729 (1111)
Q Consensus 662 ~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~G-G~iv~~G~~~ 729 (1111)
++|+||||+++||.-+++.+.++|.++.+ .|+.+++|||+.++++ -+++++++|+-+ |+++..-+++
T Consensus 152 ~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAl-flatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 152 QLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEAL-FLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred ceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH-hhhheeEEecCCCceeeEecCCC
Confidence 99999999999999999999999998865 5999999999999876 489999999743 5777665554
No 185
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-39 Score=337.92 Aligned_cols=188 Identities=46% Similarity=0.733 Sum_probs=163.8
Q ss_pred EEEEEeEEEEEcCC--cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccE
Q 001270 501 EVSFKDLTLTLKGK--NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKII 578 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~--~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 578 (1111)
.|+++|+++.|+.+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+....+++|+|.++|+++. ..+++.+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhce
Confidence 47899999999642 25799999999999999999999999999999999997543468999999998764 4456789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
+|++|++.+++.+||+||+.+.... + .|||||||||+|||||+
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 82 GYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred EEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHHHHHHHHHh
Confidence 9999999999899999999874310 0 29999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++..+.+.+|++++|.++|++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999887799999999998744457899999998746788765
No 186
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.2e-39 Score=401.01 Aligned_cols=215 Identities=27% Similarity=0.423 Sum_probs=180.0
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC---Ccccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE---PIHSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~r~ 576 (1111)
..|+++||+|+|++.++.+|+|+|++|++||.+||+|+||||||||+++|+|++. |.+|+|++||.++ +...+|+
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~ 553 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPREEIPREVLAN 553 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeHHHCCHHHHHh
Confidence 3689999999997656789999999999999999999999999999999999775 6899999999885 3456889
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-------VRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-------~~d~~vg~~~~rgLSGGQrQ 649 (1111)
.||||+|++.+|. .|++|||.++... .+.+ .+.++++..|+.+ -.|+.+++ .+..|||||||
T Consensus 554 ~i~~v~Q~~~lf~-gTi~eNi~l~~~~-----~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQ 622 (710)
T TIGR03796 554 SVAMVDQDIFLFE-GTVRDNLTLWDPT-----IPDA----DLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQ 622 (710)
T ss_pred heeEEecCChhhh-ccHHHHhhCCCCC-----CCHH----HHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHH
Confidence 9999999999985 5999999875321 1111 2334444444432 34566665 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
|++|||||+++|+|||||||||+||+.++..+++.|++ .++|+|++||+++. .+.+|++++|++ |++++.|+.+
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~Iivl~~-G~i~~~G~~~ 696 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDEIIVLER-GKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCEEEEEeC-CEEEEecCHH
Confidence 99999999999999999999999999999999999976 48999999999864 478999999986 5889999999
Q ss_pred hHHH
Q 001270 730 KVEE 733 (1111)
Q Consensus 730 ~l~~ 733 (1111)
++.+
T Consensus 697 ~Ll~ 700 (710)
T TIGR03796 697 ELWA 700 (710)
T ss_pred HHHH
Confidence 8753
No 187
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-39 Score=349.24 Aligned_cols=220 Identities=30% Similarity=0.455 Sum_probs=176.0
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccccE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 578 (1111)
|+++|++++|++.++.+|+|+||++++||+++|+||||||||||+++|+|+.. +++|+|.++|++.. ...+++.+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i 78 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQI 78 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhE
Confidence 46899999996433479999999999999999999999999999999999865 68999999998753 22456789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTL--GLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~L--GL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
+|++|++.+++ .||+||+.+..................++++++.+ |+.+..+..+. .|||||||||+||||
T Consensus 79 ~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~LS~G~~qrv~la~a 152 (234)
T cd03251 79 GLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGV-----KLSGGQRQRIAIARA 152 (234)
T ss_pred EEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCC-----cCCHHHHHHHHHHHH
Confidence 99999998886 69999998764311000111111112345566666 66666665554 499999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
|+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||+++. + ..+|++++|.+| ++++.|+.+++.+
T Consensus 153 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~v~~l~~G-~i~~~~~~~~~~~ 225 (234)
T cd03251 153 LLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLST-I-ENADRIVVLEDG-KIVERGTHEELLA 225 (234)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEecCC-eEeeeCCHHHHHH
Confidence 999999999999999999999999999999986 48999999999975 3 459999999875 7788998877643
No 188
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-39 Score=385.57 Aligned_cols=220 Identities=25% Similarity=0.364 Sum_probs=186.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc----cccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH----SYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~----~~r~ 576 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++... ..++
T Consensus 5 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 5 YISMAGIGKSFG--PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred eEEEeeeEEEcC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCHHHHHHC
Confidence 378999999994 4679999999999999999999999999999999999765 5889999999876321 1245
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhc-ccc---chHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRL-SAH---LAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~-~~~---~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
.||||+|++.+++.+||+||+.++..... ... ....+..++++++++.+||.+..++.+++ |||||||||+
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrv~ 155 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVAN-----LSISHKQMLE 155 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhh-----CCHHHHHHHH
Confidence 79999999999999999999987542110 001 11223345688899999999888888765 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++. +...+|++++|.+ |++++.|+++++
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~ 232 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAE-IRRICDRYTVMKD-GSSVCSGMVSDV 232 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEeeecchhhC
Confidence 9999999999999999999999999999999999998889999999999875 4578999999986 578899998764
No 189
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3e-39 Score=391.03 Aligned_cols=216 Identities=25% Similarity=0.386 Sum_probs=181.2
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||+|+|+++++.+|+|+|++|++||.+||+|+||||||||+++|+|++. |.+|+|++||.+++ ...+++.
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEEhhhcCHHHHHhh
Confidence 589999999997555789999999999999999999999999999999999775 68899999998853 3467889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-------TVRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-------~~~d~~vg~~~~rgLSGGQrQR 650 (1111)
|+||||++.+|+ -|++|||.++... ...+ +.++++++..|+. +-.|+.+|+ ....||||||||
T Consensus 419 i~~v~Q~~~lf~-~Ti~~Ni~~~~~~----~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~-~g~~LSGGqrQR 488 (582)
T PRK11176 419 VALVSQNVHLFN-DTIANNIAYARTE----QYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGE-NGVLLSGGQRQR 488 (582)
T ss_pred ceEEccCceeec-chHHHHHhcCCCC----CCCH----HHHHHHHHHhCcHHHHHhcccccCceeCC-CCCcCCHHHHHH
Confidence 999999999996 5999999886321 1111 1244455555433 335677776 356799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
++|||||+++|+|||||||||+||+.++..+++.|+++. +++|+|+|||+++ ..+.+|++++|++ |++++.|+.++
T Consensus 489 i~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~-g~i~e~g~~~~ 564 (582)
T PRK11176 489 IAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED-GEIVERGTHAE 564 (582)
T ss_pred HHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC-CEEEEeCCHHH
Confidence 999999999999999999999999999999999999874 5799999999986 3588999999986 58899999988
Q ss_pred HH
Q 001270 731 VE 732 (1111)
Q Consensus 731 l~ 732 (1111)
+.
T Consensus 565 l~ 566 (582)
T PRK11176 565 LL 566 (582)
T ss_pred HH
Confidence 74
No 190
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-39 Score=347.78 Aligned_cols=218 Identities=27% Similarity=0.329 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++|++++|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+..+. +.+|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYG--NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEEC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 378999999994 467999999999999999999999999999999999986421 368999999987531 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ----TVRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~----~~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.++|++|++.+++ .||+||+.+...... ..........++++++.+|+. +..++.+ ..||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~Gq~ 153 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRNA-----QAFSGGQQ 153 (251)
T ss_pred HhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccCh-----hhCCHHHH
Confidence 35678999999998886 799999988653221 011222234577888999984 2334444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++. +.+.+|++++|.+ |+++..|+.
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~-~~~~~d~i~~l~~-G~i~~~~~~ 230 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQ-AGRISDQTAFLMN-GDLIEAGPT 230 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHH-HHhhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999854 6899999999975 4578999999986 578899988
Q ss_pred hhH
Q 001270 729 KKV 731 (1111)
Q Consensus 729 ~~l 731 (1111)
+++
T Consensus 231 ~~~ 233 (251)
T PRK14251 231 EEM 233 (251)
T ss_pred HHH
Confidence 765
No 191
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-39 Score=373.41 Aligned_cols=222 Identities=27% Similarity=0.436 Sum_probs=183.5
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC---Ccccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE---PIHSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~r~ 576 (1111)
-.|+|+||++.|+ .+++||++|||+|++||-+||+|+|||||||+||+|.++.. .+|+|+|||+++ +.+.+|+
T Consensus 350 ~~I~F~dV~f~y~-~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~dik~~~~~SlR~ 425 (591)
T KOG0057|consen 350 GSIEFDDVHFSYG-PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQDIKEVSLESLRQ 425 (591)
T ss_pred CcEEEEeeEEEeC-CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCeeHhhhChHHhhh
Confidence 3599999999995 34559999999999999999999999999999999999763 789999999985 4567899
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.|||||||..||. -||.+||.++......+..-+..+....++++..+ .+-.++.+|+. ...|||||||||+||||
T Consensus 426 ~Ig~VPQd~~LFn-dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l--~~GY~T~VGer-G~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 426 SIGVVPQDSVLFN-DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRL--PDGYQTLVGER-GLMLSGGEKQRVSLARA 501 (591)
T ss_pred heeEeCCcccccc-hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhc--cccchhhHhhc-ccccccchHHHHHHHHH
Confidence 9999999999985 59999999986533322233333333444444443 23345567763 34589999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
++++|+|+++|||||+||.+++.++++.+.+ ...|+|+|+|.|+++. .+.||+|++|++| .+...|+.+++..
T Consensus 502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~l--l~~~DkI~~l~nG-~v~e~gth~ell~ 574 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDL--LKDFDKIIVLDNG-TVKEYGTHSELLA 574 (591)
T ss_pred HhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchh--HhcCCEEEEEECC-eeEEeccHHHHhh
Confidence 9999999999999999999999999999998 4468999999999874 5889999999875 7899999999875
No 192
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1e-38 Score=349.47 Aligned_cols=218 Identities=25% Similarity=0.342 Sum_probs=180.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCee-----CCc---c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN-----EPI---H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~-----~~~---~ 572 (1111)
.|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|++. +++|+|.++|++ +.. .
T Consensus 6 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 6 LLSVRGLTKLYG--PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred eEEEeeeEEEcC--CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccccccccccCCHH
Confidence 478999999994 4579999999999999999999999999999999999765 688999999986 421 1
Q ss_pred c----ccccEEEEccCCC--CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCH
Q 001270 573 S----YKKIIGFVPQDDI--VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISG 645 (1111)
Q Consensus 573 ~----~r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSG 645 (1111)
. .++.++||+|++. +++.+|+.||+.+....... ....+....+.++++.+|+.+ ..++.+.+ |||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LS~ 154 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGA--RHYGDIRATAGDWLERVEIDAARIDDLPTT-----FSG 154 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHcCCChhHHhCCCcc-----CCH
Confidence 1 2457999999974 56778999999764321110 111123345788999999973 56666654 999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEE
Q 001270 646 GQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVY 724 (1111)
Q Consensus 646 GQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~ 724 (1111)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|.+ |++++
T Consensus 155 Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~-~~~~~d~i~~l~~-g~i~~ 232 (258)
T PRK11701 155 GMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLAHRLLVMKQ-GRVVE 232 (258)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998765 8999999999875 4568999999987 57899
Q ss_pred ecCHhhH
Q 001270 725 HGSVKKV 731 (1111)
Q Consensus 725 ~G~~~~l 731 (1111)
.|+++++
T Consensus 233 ~~~~~~~ 239 (258)
T PRK11701 233 SGLTDQV 239 (258)
T ss_pred eCCHHHH
Confidence 9998765
No 193
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=349.87 Aligned_cols=221 Identities=22% Similarity=0.335 Sum_probs=182.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++|++++|+ .+.+|+||||+|++||+++|+|+|||||||||++|+|+..+. +.+|+|.++|+++.. .
T Consensus 7 ~l~~~nl~~~~~--~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 7 AIKVNNLSFYYD--TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred eEEEeeEEEEeC--CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 588999999994 457999999999999999999999999999999999987532 137999999987521 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.++|++|++.+++ +||+||+.+...... .....+..+.+.++++.+|+.+ ..++.+ ..||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgGq~ 156 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHKSA-----LDLSGGQQ 156 (261)
T ss_pred HhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcCCc-----ccCCHHHH
Confidence 35678999999988887 899999988653221 0122233356788999998854 334444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCC----cEEE
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKG----GLTV 723 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~G----G~iv 723 (1111)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++||+++. +.+.+|++++|.++ |+++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~-i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQ-VSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-HHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999875 58999999999975 56899999999863 6889
Q ss_pred EecCHhhHH
Q 001270 724 YHGSVKKVE 732 (1111)
Q Consensus 724 ~~G~~~~l~ 732 (1111)
++|+++++.
T Consensus 236 ~~~~~~~~~ 244 (261)
T PRK14258 236 EFGLTKKIF 244 (261)
T ss_pred EeCCHHHHH
Confidence 999998874
No 194
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=350.72 Aligned_cols=218 Identities=25% Similarity=0.328 Sum_probs=179.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC--C-CCceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAI--A-CKATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~--~-~~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++|++++|+ ++.+|+|+||+|++||+++|+|+|||||||||++|+|+.. + .+++|+|.++|+++.. .
T Consensus 21 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYG--EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeC--CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 488999999994 4679999999999999999999999999999999999753 1 2578999999987632 1
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ----TVRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~----~~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.++|++|++.+++. ||+||+.+...... ..........+.++++.+++. +..++.++ .||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSgGq~ 170 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSAL-----SLSGGQQ 170 (268)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcc-----cCCHHHH
Confidence 346789999999988875 99999988643221 111122234567788888884 33455554 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+.+|++++|.+ |++++.|+.
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~-~~~~~d~v~~l~~-G~i~~~~~~ 247 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQ-ALRVSDRTAFFLN-GDLVEYDQT 247 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 6899999999874 5578999999986 578899998
Q ss_pred hhH
Q 001270 729 KKV 731 (1111)
Q Consensus 729 ~~l 731 (1111)
+++
T Consensus 248 ~~~ 250 (268)
T PRK14248 248 EQI 250 (268)
T ss_pred HHH
Confidence 765
No 195
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=6e-39 Score=343.14 Aligned_cols=207 Identities=28% Similarity=0.435 Sum_probs=176.9
Q ss_pred EEEEeEEEEEcCC--cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------cc
Q 001270 502 VSFKDLTLTLKGK--NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------HS 573 (1111)
Q Consensus 502 L~~~nLs~~y~~~--~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~~ 573 (1111)
|+++|+++.|+.+ .+.+|+||||++++|++++|+|+||||||||+++|+|++. +++|+|+++|+++.. ..
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASEKELVQ 79 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhHhcCHhHHHH
Confidence 5789999999532 2679999999999999999999999999999999999764 689999999987531 12
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaI 653 (1111)
+++.|+|++|++.+++.+|+.||+.+...... .....+....++++++.+||.+..++.+.+ ||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----lS~G~~qrv~l 152 (220)
T TIGR02982 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYPHN-----LSGGQKQRVAI 152 (220)
T ss_pred HHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHH
Confidence 46789999999999988999999998754221 122333445688999999998877777654 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ..+.+|++++|.+|
T Consensus 153 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g 217 (220)
T TIGR02982 153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217 (220)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999876 4899999999986 34799999999865
No 196
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=347.42 Aligned_cols=219 Identities=25% Similarity=0.312 Sum_probs=180.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC---ceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACK---ATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~---~sG~I~inG~~~~~-----~ 572 (1111)
.|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+..+.+ ++|+|.++|+++.. .
T Consensus 6 ~i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYG--EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEEC--CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 478999999994 5679999999999999999999999999999999999764322 48999999987532 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
..++.|+|++|++.+++. ||+||+.+....... .........+.++++.+++.+ ..++.+ +.||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS~G~~ 155 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDSA-----LSLSGGQQ 155 (253)
T ss_pred hhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcCh-----hhCCHHHH
Confidence 346789999999988874 999999987543211 112223345778888888743 234444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.+.+|++++|.+ |+++..|++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~-~~~~~d~v~~l~~-G~i~~~g~~ 232 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQ-AARVSDYTGFMYL-GKLIEFDKT 232 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHH-HHhhCCEEEEEEC-CEEEEcCCH
Confidence 999999999999999999999999999999999999999875 6899999999875 4578999999987 578899998
Q ss_pred hhHH
Q 001270 729 KKVE 732 (1111)
Q Consensus 729 ~~l~ 732 (1111)
+++.
T Consensus 233 ~~~~ 236 (253)
T PRK14261 233 TQIF 236 (253)
T ss_pred HHHH
Confidence 7663
No 197
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=346.87 Aligned_cols=218 Identities=24% Similarity=0.340 Sum_probs=178.2
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++||+++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+..+. +.+|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~~--~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYH--KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEEC--CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 377899999994 467999999999999999999999999999999999987532 136999999987531 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.++||+|++.+++. ||+||+.+....+.. .........++++++.+||.+ ..++.+ ..||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS~Gq~ 153 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHKSG-----LALSGGQQ 153 (251)
T ss_pred HhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhCCc-----ccCCHHHH
Confidence 356789999999988875 999999987543211 111222345677788888753 334444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||+++. +.+.+|++++|.+ |++++.|++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~-~~~~~d~i~~l~~-G~i~~~~~~ 230 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQ-AARASDWTGFLLT-GDLVEYGRT 230 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-HHhhCCEEEEEeC-CeEEEeCCH
Confidence 99999999999999999999999999999999999999985 68999999999975 4578999999986 578899998
Q ss_pred hhH
Q 001270 729 KKV 731 (1111)
Q Consensus 729 ~~l 731 (1111)
+++
T Consensus 231 ~~~ 233 (251)
T PRK14249 231 GEI 233 (251)
T ss_pred HHH
Confidence 775
No 198
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=6.3e-39 Score=347.13 Aligned_cols=201 Identities=27% Similarity=0.407 Sum_probs=169.5
Q ss_pred CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC--cccccccEEEEc-cCCCCCCC
Q 001270 514 KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP--IHSYKKIIGFVP-QDDIVHGN 590 (1111)
Q Consensus 514 ~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~--~~~~r~~IgyV~-Qd~~l~~~ 590 (1111)
+.+.+|+||||+|++||+++|+|+|||||||||++|+|+.. +++|+|.++|++.. ...+++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 45679999999999999999999999999999999999765 58999999998642 123567899998 55678888
Q ss_pred CCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001270 591 LTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPT 670 (1111)
Q Consensus 591 LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPT 670 (1111)
+||+||+.+..... .....+....++++++.+||.+..++.+.+ ||||||||++||++|+.+|++|||||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVRQ-----LSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865432 122223344577899999998888887765 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 671 SGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 671 SGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKD-IEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHH-HHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998765 8999999999874 4578999999986 4676654
No 199
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=353.31 Aligned_cols=217 Identities=24% Similarity=0.347 Sum_probs=178.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC---CCceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA---CKATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++||+++|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+..+ .+.+|+|.++|+++.. .
T Consensus 39 ~l~i~~l~~~~~--~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 116 (285)
T PRK14254 39 VIEARDLNVFYG--DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116 (285)
T ss_pred eEEEEEEEEEEC--CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH
Confidence 488999999994 46799999999999999999999999999999999998642 1578999999987521 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.++||+|++.+++. ||.||+.+...... ... +....++++++.+||.. ..++.++ .||||||
T Consensus 117 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~-----~LSgGe~ 186 (285)
T PRK14254 117 ALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSSGL-----DLSGGQQ 186 (285)
T ss_pred hhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCCcc-----cCCHHHH
Confidence 356789999999988875 99999988654321 111 22345788999999853 3455544 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ .|||++||+++. +.+++|+++++.++|+++..|++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~~-i~~~~dri~v~l~~G~i~~~g~~ 264 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQ-AARISDKTAVFLTGGELVEFDDT 264 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHH-HHhhcCEEEEEeeCCEEEEeCCH
Confidence 9999999999999999999999999999999999999999764 799999999875 45789997654334688899988
Q ss_pred hhH
Q 001270 729 KKV 731 (1111)
Q Consensus 729 ~~l 731 (1111)
+++
T Consensus 265 ~~~ 267 (285)
T PRK14254 265 DKI 267 (285)
T ss_pred HHH
Confidence 765
No 200
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=351.89 Aligned_cols=219 Identities=24% Similarity=0.358 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCCc----cc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEPI----HS 573 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~----~~ 573 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+|+||||||||+++|+|+..+. +.+|+|.++|.++.. ..
T Consensus 21 ~l~i~nl~~~~~--~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFA--GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEEC--CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 578999999994 568999999999999999999999999999999999987532 468999999987532 23
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc----ccccccCccCCCCCHHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV----RDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~----~d~~vg~~~~rgLSGGQrQ 649 (1111)
+++.|+|++|++.+++ +||+||+.+...... .....+....+.++++.+||.+. .++.+ +.|||||||
T Consensus 99 ~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~-----~~LSgGq~q 170 (276)
T PRK14271 99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSP-----FRLSGGQQQ 170 (276)
T ss_pred HhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhhCCc-----ccCCHHHHH
Confidence 5678999999998887 899999988643211 11222333456778899998643 33433 459999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
||+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+.+|++++|.+ |++++.|+++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~-~~~~~dri~~l~~-G~i~~~g~~~ 247 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQ-AARISDRAALFFD-GRLVEEGPTE 247 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999999999999999876 5899999999874 5678999999987 5788999988
Q ss_pred hHH
Q 001270 730 KVE 732 (1111)
Q Consensus 730 ~l~ 732 (1111)
++.
T Consensus 248 ~~~ 250 (276)
T PRK14271 248 QLF 250 (276)
T ss_pred HHH
Confidence 763
No 201
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.9e-39 Score=349.00 Aligned_cols=221 Identities=28% Similarity=0.451 Sum_probs=172.7
Q ss_pred EEEEeEEEEEcCC-cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 502 VSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 502 L~~~nLs~~y~~~-~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
|+++|+++.|++. ++.+|+|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|.++. ...+++.
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 78 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQ 78 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhh
Confidence 4689999999642 3569999999999999999999999999999999999765 68999999998753 2234567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTL--GLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~L--GL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
++|++|++.+++ .||+||+.+..................+.++++.+ |+....++.+ +.|||||||||+|||
T Consensus 79 i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~LS~G~~qrv~la~ 152 (238)
T cd03249 79 IGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERG-----SQLSGGQKQRIAIAR 152 (238)
T ss_pred EEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCC-----ccCCHHHHHHHHHHH
Confidence 999999998876 69999998753221100000000001123333444 4544444444 459999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEY 734 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~ 734 (1111)
+|+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++||+++. + ..+|++++|.+| ++++.|+.+++.+.
T Consensus 153 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~G-~i~~~~~~~~~~~~ 227 (238)
T cd03249 153 ALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQNG-QVVEQGTHDELMAQ 227 (238)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEECC-EEEEeCCHHHHhhc
Confidence 9999999999999999999999999999999987 79999999999875 3 479999999874 78899988776543
No 202
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.4e-39 Score=382.63 Aligned_cols=213 Identities=23% Similarity=0.394 Sum_probs=185.2
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc---c-ccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH---S-YKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~---~-~r~ 576 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+|||||||||||++|+|++. +++|+|.++|+++... . .++
T Consensus 11 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 11 LLCARSISKQYS--GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred eEEEEeEEEEeC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHhC
Confidence 488999999994 4679999999999999999999999999999999999765 5789999999875321 1 234
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.+|||+|++.+++.+||+||+.+.... ..+..++++++++.+||.+..++.+++ |||||||||+||||
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~a 154 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAGS-----LEVADRQIVEILRG 154 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChhh-----CCHHHHHHHHHHHH
Confidence 699999999999999999999886421 112234678899999999888887765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+++|++++|.+ |++++.|+++++
T Consensus 155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~ 227 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE-IRQLADRISVMRD-GTIALSGKTADL 227 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEecChHHc
Confidence 999999999999999999999999999999998889999999999875 4588999999987 478899998765
No 203
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-38 Score=345.62 Aligned_cols=218 Identities=26% Similarity=0.308 Sum_probs=177.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC---ceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACK---ATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~---~sG~I~inG~~~~~-----~ 572 (1111)
.|+++||+++|+ .+.+|+|+||+|.+||+++|+|+||||||||+++|+|+....+ ++|+|.++|+++.. .
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYG--KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEEC--CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 478999999994 4679999999999999999999999999999999999753222 58999999987531 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ----TVRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~----~~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.++|++|++.+++ .||+||+.+....+.. .......+.+.+.++.+++. +..++.++ .||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~-----~LS~Gq~ 154 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHESAL-----SLSGGQQ 154 (252)
T ss_pred HhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcCcc-----cCCHHHH
Confidence 35678999999998887 6999999886543211 11112223456778888764 33444444 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+.+|++++|.+ |+++..|++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~-~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQ-ASRISDKTAFFLT-GNLIEFADT 231 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 5899999999875 5578999999986 578899988
Q ss_pred hhH
Q 001270 729 KKV 731 (1111)
Q Consensus 729 ~~l 731 (1111)
.++
T Consensus 232 ~~~ 234 (252)
T PRK14255 232 KQM 234 (252)
T ss_pred HHH
Confidence 765
No 204
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=352.59 Aligned_cols=219 Identities=26% Similarity=0.347 Sum_probs=179.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC-C--CceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA-C--KATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~-~--~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++||+++|+ .+.+|+|+||+|++||+++|+|||||||||||++|+|+... . +.+|+|.++|+++.. .
T Consensus 39 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 39 HVVAKNFSIYYG--EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred EEEEeeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 588999999994 45799999999999999999999999999999999997531 1 379999999987531 1
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ----TVRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~----~~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.|+||+|++.+++. ||.||+.++...... .......+.+.++++.+|+. +..++.++ .||||||
T Consensus 117 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LSgGq~ 188 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKNAL-----GLSGGQQ 188 (286)
T ss_pred HhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCChh-----hCCHHHH
Confidence 356789999999988874 999999987543211 11222234567788888874 34455444 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++. +.|||++||+++. +.+.+|++++|.+ |+++..|++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~-~~~~~d~i~~L~~-G~i~~~g~~ 265 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQ-ASRVSDYTMFFYE-GVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 6899999999975 4578999999986 578899998
Q ss_pred hhHH
Q 001270 729 KKVE 732 (1111)
Q Consensus 729 ~~l~ 732 (1111)
+++.
T Consensus 266 ~~~~ 269 (286)
T PRK14275 266 AQLF 269 (286)
T ss_pred HHHH
Confidence 7763
No 205
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-38 Score=337.59 Aligned_cols=194 Identities=31% Similarity=0.524 Sum_probs=163.2
Q ss_pred EEEEEeEEEEEcCC--cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC-CceeEEEECCeeCCc--cccc
Q 001270 501 EVSFKDLTLTLKGK--NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC-KATGLILINGKNEPI--HSYK 575 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~--~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~--~~~r 575 (1111)
.+.|+||+|.|+.+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+..+. +++|+|.++|+++.. ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 47899999999753 568999999999999999999999999999999999987532 689999999987642 2456
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
+.++|++|++.+++.+||+||+.+..... .++.+. .||||||||++|||
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~~-----~LS~Ge~qrl~lar 131 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFVR-----GISGGERKRVSIAE 131 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccchh-----hCCHHHHHHHHHHH
Confidence 78999999999999999999998754210 233333 49999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
||+.+|++|||||||+|||+.++..+++.|++++++ +.|+|+++|+....+.+.+|++++|.+ |++++.|
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~g 202 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYYG 202 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999765 677777776654456689999999987 5676654
No 206
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.5e-38 Score=347.55 Aligned_cols=217 Identities=22% Similarity=0.340 Sum_probs=179.4
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CceeEEEECCeeCCcccc-ccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC--KATGLILINGKNEPIHSY-KKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~--~~sG~I~inG~~~~~~~~-r~~ 577 (1111)
.|+++||+++| + +.+|+|+||+|++||+++|+|+||||||||+++|+|+..+. +++|+|.++|+++..... ++.
T Consensus 4 ~l~~~~l~~~~--~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 4 QIELRNIALQA--A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK 80 (254)
T ss_pred EEEEeCeEEEe--c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccce
Confidence 47899999999 2 46999999999999999999999999999999999986531 178999999987643322 467
Q ss_pred EEEEccCCC--CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc---cccccccCccCCCCCHHHHHHHH
Q 001270 578 IGFVPQDDI--VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT---VRDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 578 IgyV~Qd~~--l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~---~~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
|+||+|++. +.+.+|+.+|+.+.+.... ... ..+.+.++++.+||.+ ..++.++ .|||||||||+
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~-----~LS~Gq~qrv~ 150 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLYPF-----EMSGGMLQRMM 150 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcCCc-----ccCHHHHHHHH
Confidence 999999974 4456799999877543211 111 1245788999999976 3456554 49999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~~~ 228 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV-VARLADDVAVMSH-GRIVEQGDVETL 228 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEecCHHHH
Confidence 999999999999999999999999999999999998764 8999999999875 4578999999986 578899998776
Q ss_pred H
Q 001270 732 E 732 (1111)
Q Consensus 732 ~ 732 (1111)
.
T Consensus 229 ~ 229 (254)
T PRK10418 229 F 229 (254)
T ss_pred h
Confidence 3
No 207
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-39 Score=353.07 Aligned_cols=222 Identities=23% Similarity=0.357 Sum_probs=186.7
Q ss_pred EEEEeEEEEEcCC--cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC---CCceeEEEECCeeC---Ccc-
Q 001270 502 VSFKDLTLTLKGK--NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA---CKATGLILINGKNE---PIH- 572 (1111)
Q Consensus 502 L~~~nLs~~y~~~--~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~---~~~- 572 (1111)
|+++||+.+|... ...+++||||+|++||++||+|.|||||||+.++|+|+++. ...+|+|.++|+++ +.+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 5789999999643 35799999999999999999999999999999999998862 23679999999974 222
Q ss_pred --c-ccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccc-hHHHHHHHHHHHHHHcCCCcc---ccccccCccCCCC
Q 001270 573 --S-YKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHL-AKADKVLVIERVIDTLGLQTV---RDSLVGTVEKRGI 643 (1111)
Q Consensus 573 --~-~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~-~~~~~~~~v~~vL~~LGL~~~---~d~~vg~~~~rgL 643 (1111)
. ..+.|+||||++ .|.|.+||.+.+.-...... .. .+++..+++.++|+.+||.+. .+. .+++|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~-----YPhel 154 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKS-----YPHEL 154 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhh-----CCccc
Confidence 2 235799999996 57788999999877665322 12 344556678999999999753 344 45669
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEE
Q 001270 644 SGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLT 722 (1111)
Q Consensus 644 SGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~i 722 (1111)
||||||||.||.||+.+|+|||.||||++||...+.+|+++|+++.+ .|.++|+||||+.. +.+++|||+||.. |++
T Consensus 155 SGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMYa-G~i 232 (316)
T COG0444 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYA-GRI 232 (316)
T ss_pred CCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEEC-cEE
Confidence 99999999999999999999999999999999999999999999986 59999999999985 5799999999976 689
Q ss_pred EEecCHhhHH
Q 001270 723 VYHGSVKKVE 732 (1111)
Q Consensus 723 v~~G~~~~l~ 732 (1111)
|+.|+++++.
T Consensus 233 VE~g~~~~i~ 242 (316)
T COG0444 233 VEEGPVEEIF 242 (316)
T ss_pred EEeCCHHHHh
Confidence 9999998764
No 208
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=7.8e-39 Score=395.24 Aligned_cols=217 Identities=30% Similarity=0.503 Sum_probs=181.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||+|+|++..+.+|+|+||+|++||.+||+|+||||||||+++|+|++. +.+|+|.+||.++. ...+|+.
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhhhCCHHHHHhc
Confidence 689999999997555679999999999999999999999999999999999775 68999999998853 4568899
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-------TVRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-------~~~d~~vg~~~~rgLSGGQrQR 650 (1111)
|+||+|++.+|. .|++|||.++... .+.+ .+.++++..|+. +-.|+.+|+ .+..||||||||
T Consensus 541 i~~v~Q~~~lf~-~TI~eNi~~~~~~-----~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQR 609 (694)
T TIGR03375 541 IGYVPQDPRLFY-GTLRDNIALGAPY-----ADDE----EILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQA 609 (694)
T ss_pred cEEECCChhhhh-hhHHHHHhCCCCC-----CCHH----HHHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHH
Confidence 999999999986 4999999886421 1111 233344444432 234566765 456799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
++|||||+++|++||||||||+||+.++..|.+.|+++. +++|+|+|||+++. .+.+|++++|++ |++++.|+.++
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~--~~~~D~iivl~~-G~i~e~G~~~e 685 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSL--LDLVDRIIVMDN-GRIVADGPKDQ 685 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHH--HHhCCEEEEEeC-CEEEeeCCHHH
Confidence 999999999999999999999999999999999999875 47999999999974 488999999986 58899999998
Q ss_pred HHHH
Q 001270 731 VEEY 734 (1111)
Q Consensus 731 l~~~ 734 (1111)
+.+.
T Consensus 686 Ll~~ 689 (694)
T TIGR03375 686 VLEA 689 (694)
T ss_pred HHHH
Confidence 8654
No 209
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-39 Score=403.01 Aligned_cols=264 Identities=26% Similarity=0.389 Sum_probs=204.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcccccccccccccccccccCCCceEEEEEeEEEEEcCC-cceeEeeeEEEEeCCeEEE
Q 001270 455 THSQIFNYAYAQLEKEKALQQENKNLTFSGVVSMATNTEVRKRPLIEVSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITA 533 (1111)
Q Consensus 455 ~~~~~~~~a~~~l~~~~~~~~e~~~l~~~~~~s~~~~~~~~~~~~i~L~~~nLs~~y~~~-~k~IL~~VS~~I~~Geiva 533 (1111)
.+...|..|..+..+....-.......... ............|+++||.|+|+.+ +..||+|+||.|++|+.+|
T Consensus 309 p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~-----~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~va 383 (1228)
T KOG0055|consen 309 PHLSAFAKARAAAYRIFETIDRKPSIDPYS-----KGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVA 383 (1228)
T ss_pred cchHHHhccccchHHHHHHhcCCCCCCccc-----ccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEE
Confidence 444556666666666655444332221111 1111112223579999999999854 3579999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC---CcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccch
Q 001270 534 VMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE---PIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLA 610 (1111)
Q Consensus 534 IiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~ 610 (1111)
|+|||||||||++++|.+++. |.+|+|++||.++ +.+.+|++||.|.|+|.+| ..||+|||.|+.+.....++.
T Consensus 384 lVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~~dat~~~i~ 460 (1228)
T KOG0055|consen 384 LVGPSGSGKSTLIQLLARFYD--PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGKPDATREEIE 460 (1228)
T ss_pred EECCCCCCHHHHHHHHHHhcC--CCCceEEEcCccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCCCcccHHHHH
Confidence 999999999999999999765 7899999999885 3456889999999999888 579999999986543333344
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001270 611 KADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL 690 (1111)
Q Consensus 611 ~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~ 690 (1111)
++.+.+.+.+.+..| .+-.++.+|+.+. +||||||||+||||||+.+|+|||||||||+||++++..|.++|.+. .
T Consensus 461 ~a~k~ana~~fi~~l--p~g~~T~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~ 536 (1228)
T KOG0055|consen 461 EAAKAANAHDFILKL--PDGYDTLVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA-S 536 (1228)
T ss_pred HHHHHccHHHHHHhh--HHhhcccccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh-h
Confidence 444444455565543 4456788887443 49999999999999999999999999999999999999999999875 5
Q ss_pred CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 691 EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 691 ~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
+|+|.|+|+|+++. .+.+|++++|++ |++++.|+.+|+.+
T Consensus 537 ~grTTivVaHRLSt--IrnaD~I~v~~~-G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 537 KGRTTIVVAHRLST--IRNADKIAVMEE-GKIVEQGTHDELIA 576 (1228)
T ss_pred cCCeEEEEeeehhh--hhccCEEEEEEC-CEEEEecCHHHHHh
Confidence 69999999999984 377999999987 58999999999864
No 210
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=359.23 Aligned_cols=224 Identities=24% Similarity=0.361 Sum_probs=183.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC---CCceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA---CKATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++|++++|..+.+.+|+||||+|++||++||+|+|||||||||++|+|+... .+.+|+|.++|+++.. .
T Consensus 80 ~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~ 159 (329)
T PRK14257 80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSL 159 (329)
T ss_pred eEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 5899999999965456799999999999999999999999999999999998642 2468999999998641 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccch-HHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLA-KADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~-~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
.+++.++||||++.++. .||+|||.|+.... ... +....+.++++++.++|.+..+..+++ .+..|||||||||
T Consensus 160 ~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGqkqRl 234 (329)
T PRK14257 160 ELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AGNALSGGQQQRL 234 (329)
T ss_pred hhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-CcccCCHHHHHHH
Confidence 45788999999998884 79999999865321 111 222233467788888875433333332 3456999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||+++. +.+.+|++++|.+ |++++.|+++++
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~-i~~~~Driivl~~-G~i~e~g~~~~l 311 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQ-AQRISDETVFFYQ-GWIEEAGETKTI 311 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHH
Confidence 999999999999999999999999999999999998865 6999999999975 4577999999986 588999999887
Q ss_pred H
Q 001270 732 E 732 (1111)
Q Consensus 732 ~ 732 (1111)
.
T Consensus 312 ~ 312 (329)
T PRK14257 312 F 312 (329)
T ss_pred h
Confidence 4
No 211
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-38 Score=349.61 Aligned_cols=218 Identities=26% Similarity=0.350 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC---CCceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA---CKATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+..+ .+.+|+|.++|.++.. .
T Consensus 25 ~l~~~nl~~~~~--~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 25 ALEVRNLNLFYG--DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred EEEEEEEEEEEC--CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 588999999994 45799999999999999999999999999999999998652 1478999999987632 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.++|++|++.+++. ||+||+.+...... ........+.++++++.+++.+ ..++.+ ..||||||
T Consensus 103 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~Gq~ 174 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHENA-----FGLSGGQQ 174 (272)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCCc-----ccCCHHHH
Confidence 356789999999988875 99999988654321 0112222345788889888853 334444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+.+|++++|.+ |++++.|+.
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~-~~~~~d~i~~l~~-G~i~~~g~~ 251 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQ-AARVSDYTAFMYM-GKLVEYGDT 251 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHH-HHhhCCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999875 7899999999875 4578999999986 578899988
Q ss_pred hhH
Q 001270 729 KKV 731 (1111)
Q Consensus 729 ~~l 731 (1111)
+++
T Consensus 252 ~~~ 254 (272)
T PRK14236 252 DTL 254 (272)
T ss_pred HHH
Confidence 765
No 212
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9.8e-39 Score=380.40 Aligned_cols=220 Identities=23% Similarity=0.353 Sum_probs=183.4
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc----ccccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH----SYKKI 577 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~----~~r~~ 577 (1111)
|+++||+++|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+..+.+++|+|.++|+++... ..++.
T Consensus 2 l~i~~l~~~~~--~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFG--GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeC--CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 67899999994 4679999999999999999999999999999999999875323689999999876421 13467
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHcCCCccc-cccccCccCCCCCHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSA-HLAKADKVLVIERVIDTLGLQTVR-DSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~-~~~~~~~~~~v~~vL~~LGL~~~~-d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
||||||++.+++.+||+||+.++....... .....+..++++++++.+||.+.. ++.+++ |||||||||+|||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~~qrv~iA~ 154 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGD-----YGGGQQQLVEIAK 154 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhh-----CCHHHHHHHHHHH
Confidence 999999999999999999998864322100 012223345678999999998654 455655 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+| ++++.|++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~-~~~~~d~i~~l~~G-~i~~~~~~~~ 227 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNE-VKAVCDTICVIRDG-QHVATKDMST 227 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH-HHHhCCEEEEEeCC-eEeeecCccc
Confidence 9999999999999999999999999999999998889999999999875 45789999999874 7788887654
No 213
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.2e-39 Score=387.29 Aligned_cols=216 Identities=24% Similarity=0.463 Sum_probs=184.3
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 576 (1111)
..|+++||+|+|+++++.+|+|+||+|++||.+||+||||||||||+++|+|++. +.+|+|++||+++. ...+|+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~i~~~~~~~~r~ 414 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQPIADYSEAALRQ 414 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhhhCCHHHHHh
Confidence 3689999999996544679999999999999999999999999999999999765 68999999998753 346788
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc------ccccccCccCCCCCHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV------RDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~------~d~~vg~~~~rgLSGGQrQR 650 (1111)
.|+||+|++.+|+ .|++|||.++.. ..+ ++.+.++++.+|+.+. .|+.+|+ ....||||||||
T Consensus 415 ~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqR 483 (574)
T PRK11160 415 AISVVSQRVHLFS-ATLRDNLLLAAP-----NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRR 483 (574)
T ss_pred heeEEcccchhhc-ccHHHHhhcCCC-----ccC----HHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHH
Confidence 9999999999986 599999988642 111 1235677788887654 3566665 456799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
++|||||+++|++||||||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.+|++++|++ |++++.|+.++
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~-G~i~~~g~~~~ 559 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDN-GQIIEQGTHQE 559 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeC-CeEEEeCCHHH
Confidence 999999999999999999999999999999999999875 58999999999974 367999999986 57899999887
Q ss_pred HH
Q 001270 731 VE 732 (1111)
Q Consensus 731 l~ 732 (1111)
+.
T Consensus 560 l~ 561 (574)
T PRK11160 560 LL 561 (574)
T ss_pred HH
Confidence 74
No 214
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-39 Score=343.65 Aligned_cols=219 Identities=27% Similarity=0.444 Sum_probs=170.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++|++++|++ .+.+|+|+||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|.++. ...+++.
T Consensus 2 ~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 2 EIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred eEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCHHHHhhh
Confidence 4789999999952 3469999999999999999999999999999999999765 57899999998753 2245678
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTL--GLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~L--GL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
++|++|++.+++. ||+||+.+..................+++.++.+ |+.+..++.+ +.|||||||||+|||
T Consensus 79 i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~LS~G~~~rv~la~ 152 (229)
T cd03254 79 IGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENG-----GNLSQGERQLLAIAR 152 (229)
T ss_pred EEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCC-----CcCCHHHHHHHHHHH
Confidence 9999999988875 9999998753211000000000011123333433 4444444433 459999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+|+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++. + ..+|++++|.+ |++++.|+.+++.
T Consensus 153 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~-g~~~~~~~~~~~~ 225 (229)
T cd03254 153 AMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDD-GKIIEEGTHDELL 225 (229)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeC-CeEEEeCCHHHHH
Confidence 9999999999999999999999999999999985 58999999999875 3 56999999987 4778888876654
No 215
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2e-38 Score=349.73 Aligned_cols=221 Identities=25% Similarity=0.359 Sum_probs=183.8
Q ss_pred EEEEEeEEEEEcC-------CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--
Q 001270 501 EVSFKDLTLTLKG-------KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-- 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~-------~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-- 571 (1111)
.|+++||++.|+. .++.+|+|+||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|+++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccC
Confidence 3789999999963 14679999999999999999999999999999999999765 689999999987532
Q ss_pred ----ccccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCC
Q 001270 572 ----HSYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGIS 644 (1111)
Q Consensus 572 ----~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLS 644 (1111)
..+++.++|++|++ .+++..|+.||+.+...... .....+....++++++.+|+. ...++.+.+ ||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----LS 153 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKRPPQ-----LS 153 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCCCcc-----CC
Confidence 12467899999997 46677899999976543111 122333445688999999996 466766654 99
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEE
Q 001270 645 GGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTV 723 (1111)
Q Consensus 645 GGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv 723 (1111)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|.+ |+++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~-i~~~~d~i~~l~~-G~i~ 231 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRL-VERFCQRVMVMDN-GQIV 231 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHH-HHHhCCEEEEEEC-CEEe
Confidence 99999999999999999999999999999999999999999998765 8999999999875 4578999999976 5788
Q ss_pred EecCHhhHH
Q 001270 724 YHGSVKKVE 732 (1111)
Q Consensus 724 ~~G~~~~l~ 732 (1111)
+.|+++++.
T Consensus 232 ~~g~~~~~~ 240 (268)
T PRK10419 232 ETQPVGDKL 240 (268)
T ss_pred eeCChhhcc
Confidence 999887753
No 216
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.6e-38 Score=344.85 Aligned_cols=219 Identities=23% Similarity=0.318 Sum_probs=178.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCee-----CCc---c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN-----EPI---H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~-----~~~---~ 572 (1111)
.|+++||++.|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|++ +.. .
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 78 (253)
T TIGR02323 3 LLQVSGLSKSYG--GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELELYQLSEA 78 (253)
T ss_pred eEEEeeeEEEeC--CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccccccccccCCHH
Confidence 478999999994 4579999999999999999999999999999999999765 578999999975 321 1
Q ss_pred ----cccccEEEEccCCC--CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCH
Q 001270 573 ----SYKKIIGFVPQDDI--VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISG 645 (1111)
Q Consensus 573 ----~~r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSG 645 (1111)
.+++.|+|++|++. +++.+|+.||+.+...... . .........++++++.+|+. +..++.+.+ |||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~-~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-----LSg 151 (253)
T TIGR02323 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG-A-RHYGNIRAAAHDWLEEVEIDPTRIDDLPRA-----FSG 151 (253)
T ss_pred HHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhc-c-cchHHHHHHHHHHHHHcCCChhhhhcCchh-----cCH
Confidence 12457999999974 4556799999976432111 0 01112235678899999997 466766654 999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEE
Q 001270 646 GQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVY 724 (1111)
Q Consensus 646 GQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~ 724 (1111)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +...+|++++|.+ |++++
T Consensus 152 G~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~-~~~~~d~~~~l~~-G~i~~ 229 (253)
T TIGR02323 152 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV-ARLLAQRLLVMQQ-GRVVE 229 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998754 8999999999875 4568999999986 57889
Q ss_pred ecCHhhHH
Q 001270 725 HGSVKKVE 732 (1111)
Q Consensus 725 ~G~~~~l~ 732 (1111)
.|+++++.
T Consensus 230 ~~~~~~~~ 237 (253)
T TIGR02323 230 SGLTDQVL 237 (253)
T ss_pred ECCHHHHh
Confidence 99887653
No 217
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-38 Score=336.96 Aligned_cols=199 Identities=25% Similarity=0.316 Sum_probs=169.0
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 579 (1111)
|+++||+++|+ .+.+|+||||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ..+++.++
T Consensus 2 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERD--ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRDEYHQDLL 77 (204)
T ss_pred eEEEEEEEEEC--CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchHHhhhheE
Confidence 67899999994 4679999999999999999999999999999999999765 588999999987532 23567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|++|++.+++.+||.||+.+...... . ...+.++++++.+||.+..++.+.+ ||||||||++|||||+.
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPVRQ-----LSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCChhh-----cCHHHHHHHHHHHHHhc
Confidence 99999999999999999988754321 1 1224578899999998877777655 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEE
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLL 716 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL 716 (1111)
+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+..++++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 999999999999999999999999999988778999999999875 33433444444
No 218
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2e-38 Score=333.74 Aligned_cols=188 Identities=53% Similarity=0.875 Sum_probs=163.2
Q ss_pred EEEEEeEEEEEcCC----cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccc
Q 001270 501 EVSFKDLTLTLKGK----NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~----~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~ 576 (1111)
.|+++||+++|+.. .+.+|+|+||+|++||+++|+||||||||||+++|+|+....+.+|+|.++|+++....+++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 57899999999642 26799999999999999999999999999999999997611368899999999865435677
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.++|++|++.+++.+|++||+.+.... . .|||||||||+||||
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~---------------~----------------------~LS~G~~qrv~lara 125 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKL---------------R----------------------GLSGGERKRVSIALE 125 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHh---------------c----------------------cCCHHHHHHHHHHHH
Confidence 899999999999999999999764310 0 299999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
|+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||+++..+.+.+|++++|.+ |++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999998877999999999987455678999999987 4666654
No 219
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=7.7e-39 Score=343.89 Aligned_cols=210 Identities=22% Similarity=0.369 Sum_probs=174.2
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|.++. ...+++.
T Consensus 7 ~i~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 7 LLQLQNVGYLAG--DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred eEEEeccEEeeC--CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEcCcCCHHHHHhc
Confidence 478999999994 4679999999999999999999999999999999999764 68999999998753 2235678
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
++|++|++.+++ .||+||+.+...... ... ....++++++.+|+. ...++.+.+ |||||||||+||||
T Consensus 83 i~~~~q~~~l~~-~tv~enl~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~-----LS~G~~qrv~lara 151 (225)
T PRK10247 83 VSYCAQTPTLFG-DTVYDNLIFPWQIRN---QQP--DPAIFLDDLERFALPDTILTKNIAE-----LSGGEKQRISLIRN 151 (225)
T ss_pred cEEEeccccccc-ccHHHHHHhHHhhcC---CCh--HHHHHHHHHHHcCCChHHhcCCccc-----CCHHHHHHHHHHHH
Confidence 999999998886 599999988643321 111 123567899999996 456766654 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. + +.+|++++|.+.+..+.+|.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 152 LQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhh
Confidence 99999999999999999999999999999998764 8999999999875 3 57999999964333455554
No 220
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=346.10 Aligned_cols=223 Identities=24% Similarity=0.305 Sum_probs=182.5
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCCc-----
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEPI----- 571 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~----- 571 (1111)
+.+.++++++.| +++.+|+|+||+|++||+++|+|+||||||||+++|+|++.+. +.+|+|.++|+++..
T Consensus 7 ~~~~~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 7 IVMDCKLDKIFY--GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred ceEEEEeEEEEe--CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 357889999999 4568999999999999999999999999999999999987531 268999999987531
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 001270 572 HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 572 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
..+++.|+|++|++.++ .+|+.||+.++..... .. .+....++++++.+||.+..+...+ ...+.|||||+||+
T Consensus 85 ~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv 158 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---YK-GDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRL 158 (261)
T ss_pred HhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---ch-HHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHH
Confidence 23567899999999887 5999999998754321 11 1223467889999998643322221 13456999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe-------CCcEEEE
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA-------KGGLTVY 724 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~-------~GG~iv~ 724 (1111)
+|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||+++. +.+.+|++++|. ++|++++
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~-i~~~~d~v~~l~~~~~~~~~~G~i~~ 236 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQ-AIRVADTTAFFSVDISQGTRTGYLVE 236 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHH-HHHhCCEEEEEecccccccCCceEEE
Confidence 99999999999999999999999999999999999985 47899999999975 558899999996 3578999
Q ss_pred ecCHhhHH
Q 001270 725 HGSVKKVE 732 (1111)
Q Consensus 725 ~G~~~~l~ 732 (1111)
.|+.+++.
T Consensus 237 ~g~~~~~~ 244 (261)
T PRK14263 237 MGPTAQIF 244 (261)
T ss_pred eCCHHHHH
Confidence 99988764
No 221
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-38 Score=348.86 Aligned_cols=219 Identities=22% Similarity=0.260 Sum_probs=179.5
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCCc-----
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEPI----- 571 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~----- 571 (1111)
..|+++||++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+..+. +.+|+|.++|+++..
T Consensus 19 ~~l~~~nl~~~~~--~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYG--GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeC--CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 3688999999994 457999999999999999999999999999999999986432 258999999987531
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCHHH
Q 001270 572 HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ----TVRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 572 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~----~~~d~~vg~~~~rgLSGGQ 647 (1111)
..+++.|+|++|++.+++. ||.||+.++...+. ... ...+.++++++.+++. +..++.+ ..|||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LSgGq 166 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDKLKEKG-----TALSGGQ 166 (274)
T ss_pred HHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHHhcCCc-----ccCCHHH
Confidence 2356789999999988864 99999988643221 111 1123456778888874 3334444 4599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe--------CC
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA--------KG 719 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~--------~G 719 (1111)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+.+|++++|. +.
T Consensus 167 ~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l~~~~~~~~~~~ 244 (274)
T PRK14265 167 QQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQ-ASRVADWTAFFNTEIDEYGKRR 244 (274)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEEEecccccccccC
Confidence 9999999999999999999999999999999999999999864 6899999999975 568999999997 25
Q ss_pred cEEEEecCHhhHH
Q 001270 720 GLTVYHGSVKKVE 732 (1111)
Q Consensus 720 G~iv~~G~~~~l~ 732 (1111)
|++++.|+++++.
T Consensus 245 G~~~~~g~~~~~~ 257 (274)
T PRK14265 245 GKLVEFSPTEQMF 257 (274)
T ss_pred ceEEEeCCHHHHH
Confidence 7899999998773
No 222
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.8e-38 Score=338.61 Aligned_cols=201 Identities=23% Similarity=0.294 Sum_probs=174.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++|++++|+ ++.+|+++||+|++||+++|+|+||||||||+++|+|+.. +.+|+|.++|+++.....++.++|
T Consensus 11 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 11 LLAAHALAFSRN--EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred eEEEeeEEEecC--CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEccchhhhhceEE
Confidence 488999999994 4579999999999999999999999999999999999765 688999999987653334567999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
++|++.+++.+|++||+.+...... .. ..+.++++++.+||.+..++.+.+ |||||||||+|||+|+.+
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLVRQ-----LSAGQKKRLALARLWLSP 155 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCChhh-----CCHHHHHHHHHHHHHhcC
Confidence 9999999988999999988654321 11 123467889999998877877765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~ 717 (1111)
|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~~~i~~l~ 211 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYA-APPVRTRMLTLE 211 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhh-hhhhcceEEEEe
Confidence 99999999999999999999999999988889999999999975 568999999885
No 223
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-38 Score=348.81 Aligned_cols=218 Identities=23% Similarity=0.336 Sum_probs=177.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC---CCceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA---CKATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++||++.|+ ++.+|+|+||+|++||+++|+|+|||||||||++|+|+... .+++|+|.++|+++.. .
T Consensus 24 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 24 VFDTQNLNLWYG--EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred EEEEeeeEEEEC--CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 488999999994 45799999999999999999999999999999999997641 1478999999987531 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCC----CccccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGL----QTVRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL----~~~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.++|++|++.+++ .||+||+.++..... ...+......+.++++.+++ .+..++.+ ..||||||
T Consensus 102 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-----~~LSgGe~ 173 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNA-----YGLSGGQQ 173 (271)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCc-----ccCCHHHH
Confidence 34678999999998887 599999998754221 01111223345677777754 33344444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.+.+|++++|.+ |++++.|+.
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~-i~~~~d~i~~l~~-G~i~~~g~~ 250 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQ-AARISDKTAFFLN-GYVNEYDDT 250 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHH-HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 7999999999875 4578999999986 578899998
Q ss_pred hhH
Q 001270 729 KKV 731 (1111)
Q Consensus 729 ~~l 731 (1111)
+++
T Consensus 251 ~~~ 253 (271)
T PRK14238 251 DKI 253 (271)
T ss_pred HHH
Confidence 765
No 224
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-38 Score=347.67 Aligned_cols=218 Identities=23% Similarity=0.282 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCC-----cc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEP-----IH 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~-----~~ 572 (1111)
.|+++||+++|+ .+.+|+||||+|++||+++|+|+||||||||+++|+|+..+. +++|+|.++|+++. ..
T Consensus 10 ~l~i~~v~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYG--SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEEC--CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 478999999994 457999999999999999999999999999999999976421 36899999998752 12
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.|+||+|++.+++ .||.||+.+...... .. .+..+.++++++.+++.+ ..++.+ +.||||||
T Consensus 88 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LSgGq~ 157 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQSG-----LSLSGGQQ 157 (264)
T ss_pred HHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCCc-----ccCCHHHH
Confidence 35678999999998887 599999988654221 11 122234667778888743 334444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeC--------Cc
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAK--------GG 720 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~--------GG 720 (1111)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.+.+|++++|++ .|
T Consensus 158 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~-~~~~~d~v~~l~~~~~~~~~~~g 235 (264)
T PRK14243 158 QRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQ-AARVSDMTAFFNVELTEGGGRYG 235 (264)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-HHHhCCEEEEEecccccccccCc
Confidence 999999999999999999999999999999999999999875 5899999999875 5689999999972 46
Q ss_pred EEEEecCHhhHH
Q 001270 721 LTVYHGSVKKVE 732 (1111)
Q Consensus 721 ~iv~~G~~~~l~ 732 (1111)
++++.|+++++.
T Consensus 236 ~i~~~~~~~~~~ 247 (264)
T PRK14243 236 YLVEFDRTEKIF 247 (264)
T ss_pred eEEEeCCHHHHH
Confidence 899999988774
No 225
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5.7e-38 Score=341.70 Aligned_cols=223 Identities=22% Similarity=0.313 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccc-
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKK- 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~- 576 (1111)
.|+++||++.|+ ++.+|+||||+|++||+++|+|+||||||||+++|+|+....+++|+|.++|.++.. ...++
T Consensus 7 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVN--ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeC--CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 488999999994 457999999999999999999999999999999999973223689999999987532 12222
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhcc----ccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLS----AHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~----~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
.++|++|++.+++.+|+.+|+.+....... ......+...++.++++.+|+. +..++.+++ .|||||||||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----~LSgG~~qrv 160 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNE----GFSGGEKKRN 160 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcccccc----CCCHHHHHHH
Confidence 489999999999999999999875432110 0111112234577889999997 455665531 4999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCeEEEEeCCcEEEEecCHhh
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRM-FDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~-~D~vilL~~GG~iv~~G~~~~ 730 (1111)
+|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||+++.. ... +|++++|.+ |++++.|+++.
T Consensus 161 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~ 238 (252)
T CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLL-DYIKPDYVHVMQN-GKIIKTGDAEL 238 (252)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HhhhCCEEEEEeC-CEEEEecChhh
Confidence 999999999999999999999999999999999999987799999999998753 344 799999976 58899998874
Q ss_pred H
Q 001270 731 V 731 (1111)
Q Consensus 731 l 731 (1111)
+
T Consensus 239 ~ 239 (252)
T CHL00131 239 A 239 (252)
T ss_pred h
Confidence 3
No 226
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.8e-38 Score=381.91 Aligned_cols=223 Identities=27% Similarity=0.469 Sum_probs=180.2
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++|++++|+.+++.+|+|+|+++++||.++|+||||||||||+++|+|++. |.+|+|.+||.++. ...+++.
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEehhhCCHHHHhhh
Confidence 589999999997555689999999999999999999999999999999999765 68899999998753 3457889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
++||+|++.+++. |++||+.++......+.+....+....+++++.+ .+-.|+.+++ ....||||||||++|||||
T Consensus 394 i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 394 IGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGATLSGGQRQRIALARAL 469 (544)
T ss_pred eEEecCCcccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcCCCCHHHHHHHHHHHHH
Confidence 9999999999975 9999998643211111111112222344555555 1122444554 3467999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+++|++|||||||+|||+.++..+.+.|+++..+|+|+|++||+++. .+.+|++++|++ |++++.|+.+++.
T Consensus 470 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~--~~~~d~i~~l~~-G~i~~~g~~~~l~ 541 (544)
T TIGR01842 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL--LGCVDKILVLQD-GRIARFGERDEVL 541 (544)
T ss_pred hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEEC-CEEEeeCCHHHHh
Confidence 99999999999999999999999999999987678999999999863 478999999987 5789999988764
No 227
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-38 Score=350.16 Aligned_cols=220 Identities=25% Similarity=0.400 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||+++|++ ++.+|+||||+|++||+++|+|||||||||||++|+|++. +++|+|.++|+++.....++.++|
T Consensus 6 ~l~~~~l~~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~i~~ 82 (272)
T PRK15056 6 GIVVNDVTVTWRN-GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLVAY 82 (272)
T ss_pred eEEEEeEEEEecC-CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhccceEEE
Confidence 4889999999952 3579999999999999999999999999999999999765 689999999987642222346999
Q ss_pred EccCCCCC--CCCCHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 581 VPQDDIVH--GNLTVEENLWFHARCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 581 V~Qd~~l~--~~LTV~EnL~f~a~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
++|++.+. ...+++||+.++...... ...........++++++.+||.+..++.+++ |||||||||+|||||
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrv~laraL 157 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGE-----LSGGQKKRVFLARAI 157 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCccc-----CCHHHHHHHHHHHHH
Confidence 99997653 234789998754211000 0011122234567889999998888887765 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|+++++ + |++++.|+++++
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~-~~~~~d~v~~~-~-G~i~~~g~~~~~ 228 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS-VTEFCDYTVMV-K-GTVLASGPTETT 228 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEE-C-CEEEeecCHHhc
Confidence 99999999999999999999999999999998779999999999874 45789998766 5 688899988765
No 228
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-38 Score=342.99 Aligned_cols=220 Identities=23% Similarity=0.330 Sum_probs=180.3
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC-C--CceeEEEECCeeCCc-----
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA-C--KATGLILINGKNEPI----- 571 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~-~--~~sG~I~inG~~~~~----- 571 (1111)
+.|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+... . +++|+|.++|+++..
T Consensus 2 ~~l~~~~v~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 2 YRIEVENLNTYFD--DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred cEEEEEeEEEEeC--CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 4588999999994 46799999999999999999999999999999999997531 1 378999999987532
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc----ccccccCccCCCCCHHH
Q 001270 572 HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV----RDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 572 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~----~d~~vg~~~~rgLSGGQ 647 (1111)
...++.++|+||++.+++. |+.||+.+...... ........+.+.++++.+||.+. .++.+ ..|||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS~Gq 151 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDKSA-----LGLSGGQ 151 (250)
T ss_pred HHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhCCc-----ccCCHHH
Confidence 2356789999999988875 99999987643211 11122234567888999988542 34433 4599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
|||++|||||+.+|+||||||||+|||+.++..+.+.|++++ ++.|||++||+++. +...+|++++|.+ |++++.|+
T Consensus 152 ~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~~~~~~i~~l~~-G~i~~~g~ 228 (250)
T PRK14266 152 QQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQ-ATRVSKYTSFFLN-GEIIESGL 228 (250)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHH-HHhhcCEEEEEEC-CeEEEeCC
Confidence 999999999999999999999999999999999999999986 47899999999975 5678899999976 57899999
Q ss_pred HhhHH
Q 001270 728 VKKVE 732 (1111)
Q Consensus 728 ~~~l~ 732 (1111)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14266 229 TDQIF 233 (250)
T ss_pred HHHHH
Confidence 88763
No 229
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.2e-38 Score=394.44 Aligned_cols=215 Identities=24% Similarity=0.406 Sum_probs=179.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC---Cccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE---PIHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~r~~ 577 (1111)
.|+++||+|+|+ .++.+|+|+|++|++||.+||+|+||||||||+++|+|++. |++|+|++||.++ +...+|+.
T Consensus 473 ~I~~~~vsf~y~-~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~ 549 (708)
T TIGR01193 473 DIVINDVSYSYG-YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSLKDIDRHTLRQF 549 (708)
T ss_pred cEEEEEEEEEcC-CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEHHHcCHHHHHHh
Confidence 689999999996 34679999999999999999999999999999999999775 6899999999875 44568899
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-------TVRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-------~~~d~~vg~~~~rgLSGGQrQR 650 (1111)
||||+|++.+|+. |++|||.++... ..+.+ .+.++++..|+. .-.|+.+++ .+..||||||||
T Consensus 550 i~~v~Q~~~lf~g-TI~eNi~l~~~~----~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQR 619 (708)
T TIGR01193 550 INYLPQEPYIFSG-SILENLLLGAKE----NVSQD----EIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQR 619 (708)
T ss_pred eEEEecCceehhH-HHHHHHhccCCC----CCCHH----HHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHH
Confidence 9999999999865 999999986321 11111 233344444432 234666765 456799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
++|||||+++|+|||||||||+||+.++..+++.|+++ +|+|+|++||+++. .+.+|++++|++ |++++.|+.++
T Consensus 620 ialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~--~~~~D~i~~l~~-G~i~~~G~~~~ 694 (708)
T TIGR01193 620 IALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV--AKQSDKIIVLDH-GKIIEQGSHDE 694 (708)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH--HHcCCEEEEEEC-CEEEEECCHHH
Confidence 99999999999999999999999999999999999875 58999999999873 478999999987 58899999988
Q ss_pred HHH
Q 001270 731 VEE 733 (1111)
Q Consensus 731 l~~ 733 (1111)
+.+
T Consensus 695 L~~ 697 (708)
T TIGR01193 695 LLD 697 (708)
T ss_pred HHh
Confidence 753
No 230
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.4e-38 Score=391.46 Aligned_cols=224 Identities=28% Similarity=0.439 Sum_probs=190.2
Q ss_pred eEEEEEeEEEEEcC-CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC---Cccccc
Q 001270 500 IEVSFKDLTLTLKG-KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE---PIHSYK 575 (1111)
Q Consensus 500 i~L~~~nLs~~y~~-~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~r 575 (1111)
-+|+++||+|.|+. .+..||+|+|++|++|+.+||||||||||||.+.+|-..+. |++|.|.|||+++ +.+.+|
T Consensus 986 G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred eEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCcccccCCHHHHH
Confidence 46999999999974 34579999999999999999999999999999999999664 7899999999875 456789
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
++||.|.|+|.||. -|++|||.|+........+.++.+.+.+++++. +|.+-.|+.+|+ ...+||||||||+||||
T Consensus 1064 ~~i~lVsQEP~LF~-~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGe-rG~QLSGGQKQRIAIAR 1139 (1228)
T KOG0055|consen 1064 KQIGLVSQEPVLFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGE-RGVQLSGGQKQRIAIAR 1139 (1228)
T ss_pred HhcceeccCchhhc-ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHh--cCcCcccCccCc-ccCcCCchHHHHHHHHH
Confidence 99999999999995 599999999932111122334444445555554 566677899997 45579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
||++||+||||||.||+||+++++.|.++|.+. .+|+|.|+|.|+++. .+.+|.|+|+++ |+++++|+.+++.+
T Consensus 1140 AilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~IvIAHRLST--IqnaD~I~Vi~~-G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1140 AILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTTIVIAHRLST--IQNADVIAVLKN-GKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcEEEEecchhh--hhcCCEEEEEEC-CEEEecccHHHHHh
Confidence 999999999999999999999999999999985 579999999999974 589999999986 58999999999875
No 231
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.6e-38 Score=335.80 Aligned_cols=196 Identities=27% Similarity=0.347 Sum_probs=169.8
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 579 (1111)
|+++||++.|+ ++.+|+|+||+|++||++||+|+||||||||+++|+|+.. +.+|+|.++|.+... ..+++.++
T Consensus 1 l~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERD--GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLL 76 (201)
T ss_pred CEEEEEEEEeC--CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheE
Confidence 46899999994 4679999999999999999999999999999999999765 588999999987532 24567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|++|++.+++.+||+||+.+.... . ..++++++++.+||.+..++.+.+ ||||||||++|||||+.
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~ 142 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPVAQ-----LSAGQQRRVALARLLLS 142 (201)
T ss_pred EeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCchhh-----CCHHHHHHHHHHHHHhc
Confidence 999999998899999999875321 1 123568899999998877777654 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEE
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLL 716 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL 716 (1111)
+|++|||||||+|||+.++..+.+.|+++.++|.|||++||++.. +...+++++++
T Consensus 143 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 143 GRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 999999999999999999999999999988789999999999875 45788888776
No 232
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.8e-38 Score=383.60 Aligned_cols=213 Identities=21% Similarity=0.345 Sum_probs=180.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++|+++.|+. ++.+|+|+|++|++||.+||+|+||||||||+++|+|++. |.+|+|++||.+++ ...++++
T Consensus 340 ~i~~~~v~f~y~~-~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i~~~~~~~l~~~ 416 (592)
T PRK10790 340 RIDIDNVSFAYRD-DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLRQG 416 (592)
T ss_pred eEEEEEEEEEeCC-CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEhhhCCHHHHHhh
Confidence 5899999999964 3579999999999999999999999999999999999775 68899999998753 4568899
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-------VRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-------~~d~~vg~~~~rgLSGGQrQR 650 (1111)
|+||+|++.+|+. |++|||.++.. ..+ +.++++++.+|+.+ -.|+.+++ ....||||||||
T Consensus 417 i~~v~Q~~~lF~~-Ti~~NI~~~~~------~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQR 484 (592)
T PRK10790 417 VAMVQQDPVVLAD-TFLANVTLGRD------ISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQL 484 (592)
T ss_pred eEEEccCCccccc-hHHHHHHhCCC------CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHH
Confidence 9999999999976 99999998631 111 23455666666543 23566665 445799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
++|||||+.+|+|||||||||+||+.++..+.+.|+++.+ ++|+|++||+++. .+.+|++++|++ |++++.|+.++
T Consensus 485 ialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~--l~~~D~ii~l~~-G~i~~~G~~~~ 560 (592)
T PRK10790 485 LALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLST--IVEADTILVLHR-GQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHH--HHhCCEEEEEEC-CEEEEEcCHHH
Confidence 9999999999999999999999999999999999998754 6999999999863 478999999986 58899999998
Q ss_pred HH
Q 001270 731 VE 732 (1111)
Q Consensus 731 l~ 732 (1111)
+.
T Consensus 561 L~ 562 (592)
T PRK10790 561 LL 562 (592)
T ss_pred HH
Confidence 74
No 233
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.9e-38 Score=378.12 Aligned_cols=222 Identities=25% Similarity=0.377 Sum_probs=184.3
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEEC----------------
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILIN---------------- 565 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~in---------------- 565 (1111)
|+++||+++|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+....+++|+|.++
T Consensus 1 l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFD--GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEEC--CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 46899999994 467999999999999999999999999999999999975213688999997
Q ss_pred -------CeeC-----Cc--------ccccccEEEEccC-CCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Q 001270 566 -------GKNE-----PI--------HSYKKIIGFVPQD-DIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDT 624 (1111)
Q Consensus 566 -------G~~~-----~~--------~~~r~~IgyV~Qd-~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~ 624 (1111)
|.++ +. ..+++.+|||+|+ +.+++.+||+||+.+..... .....+..++++++++.
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~ 155 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEM 155 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHH
Confidence 2211 00 1235679999997 67888899999999865432 12233344578899999
Q ss_pred cCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCcc
Q 001270 625 LGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPS 703 (1111)
Q Consensus 625 LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~ 703 (1111)
+||.+..++.+++ |||||||||+|||||+.+|++|||||||++||+.++..+++.|+++++ .|+|||+||||++
T Consensus 156 ~gl~~~~~~~~~~-----LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 156 VQLSHRITHIARD-----LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred cCChhhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 9998888877765 999999999999999999999999999999999999999999999965 4899999999997
Q ss_pred HHHHHhcCeEEEEeCCcEEEEecCHhhHHHHH
Q 001270 704 YALFRMFDDLVLLAKGGLTVYHGSVKKVEEYF 735 (1111)
Q Consensus 704 ~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f 735 (1111)
. +.+.+|++++|++ |++++.|+++++.+.+
T Consensus 231 ~-~~~~~d~i~~l~~-G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 231 V-IEDLSDKAIWLEN-GEIKEEGTPDEVVAVF 260 (520)
T ss_pred H-HHHhcCEEEEEeC-CEEeeecCHHHHHHHH
Confidence 5 4578999999987 5788899988775543
No 234
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=5.8e-38 Score=340.61 Aligned_cols=223 Identities=27% Similarity=0.337 Sum_probs=177.0
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cc-cccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HS-YKKI 577 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~-~r~~ 577 (1111)
|+++||++.|+ ++.+|+||||+|++|++++|+|+||||||||+++|+|+....+++|+|.++|+++.. .. .++.
T Consensus 2 i~~~nl~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVE--DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeC--CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 67899999994 457999999999999999999999999999999999975223689999999986532 11 2356
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHh-hc--c-ccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARC-RL--S-AHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~-~~--~-~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
++|++|++.+++.+|+.+++.+.... .. . ......+....++++++.+++. +..++.+. +.|||||||||+
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~ 155 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRND 155 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHH
Confidence 99999999888888887776543211 10 0 0011122234677889999995 44555442 249999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCeEEEEeCCcEEEEecCHhhH
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRM-FDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~-~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++. +... +|++++|.+ |++++.|+.+.+
T Consensus 156 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~~-g~i~~~g~~~~~ 233 (248)
T PRK09580 156 ILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQ-GRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEEC-CeEEEeCCHHHH
Confidence 9999999999999999999999999999999999998778999999999875 3344 799999976 578899998865
Q ss_pred H
Q 001270 732 E 732 (1111)
Q Consensus 732 ~ 732 (1111)
.
T Consensus 234 ~ 234 (248)
T PRK09580 234 K 234 (248)
T ss_pred H
Confidence 3
No 235
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-38 Score=376.21 Aligned_cols=216 Identities=25% Similarity=0.351 Sum_probs=182.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 576 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ..+++
T Consensus 4 ~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 4 YLSFDGIGKTFP--GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred eEEEeeeEEEEC--CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHhC
Confidence 378999999994 4679999999999999999999999999999999999765 588999999987632 12467
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.||||+|++.+++.+||.||+.++............+..++++++++.+||.+..++.+++ |||||||||+||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lara 154 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKY-----LSIGQRQMVEIAKA 154 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhh-----CCHHHHHHHHHHHH
Confidence 8999999999999999999999864211101112223345678899999998777777765 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+++|++++|.+| +++..++
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~-~~~~~d~i~~l~~G-~i~~~~~ 223 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEE-IFALCDAITVFKDG-RYVATFD 223 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEECC-EEEeecC
Confidence 999999999999999999999999999999998789999999999975 45889999999875 6666554
No 236
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-38 Score=384.53 Aligned_cols=221 Identities=21% Similarity=0.304 Sum_probs=187.1
Q ss_pred EEEEEeEEEEEcCC---------cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc
Q 001270 501 EVSFKDLTLTLKGK---------NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~---------~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~ 571 (1111)
.|+++||++.|+.. .+.+|+||||+|++||+++|+|+||||||||+++|+|+.. +++|+|.++|+++..
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDT 390 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCc
Confidence 48999999999521 2469999999999999999999999999999999999875 688999999987532
Q ss_pred ------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCC
Q 001270 572 ------HSYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRG 642 (1111)
Q Consensus 572 ------~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rg 642 (1111)
..+++.|+||||++ .+++.+||.||+.+...... .....+..+++.++++.+||. +..++++++
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~----- 463 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYPHE----- 463 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCccc-----
Confidence 12467899999997 58889999999988654321 112233345688999999996 567777765
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcE
Q 001270 643 ISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGL 721 (1111)
Q Consensus 643 LSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~ 721 (1111)
|||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++ |.|||+||||++. +.+++|++++|.+ |+
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~-v~~~~dri~vl~~-G~ 541 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAV-VERISHRVAVMYL-GQ 541 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 8999999999985 4588999999986 57
Q ss_pred EEEecCHhhHH
Q 001270 722 TVYHGSVKKVE 732 (1111)
Q Consensus 722 iv~~G~~~~l~ 732 (1111)
+++.|+++++.
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 89999988874
No 237
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.9e-38 Score=342.07 Aligned_cols=199 Identities=29% Similarity=0.409 Sum_probs=167.5
Q ss_pred EeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHH
Q 001270 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLW 598 (1111)
Q Consensus 519 L~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~ 598 (1111)
|+|+||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|+++... ....+||+|++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~--~~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEP--GPDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCC--ChhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999765 6899999999876422 223589999999999999999998
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 001270 599 FHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASS 678 (1111)
Q Consensus 599 f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~ 678 (1111)
+....... .....+..+.++++++.+||.+..++.+++ |||||||||+|||+|+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 86421111 122333345678899999998877877765 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 679 QLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 679 ~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
..+.+.|++++++ |+|||++||+++. +.+.+|++++|.+ |+++..|+..
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~ 200 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDE-ALLLSDRVVMLTN-GPAANIGQIL 200 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEeC-CcEecccCce
Confidence 9999999998765 8999999999975 5688999999987 4777777544
No 238
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=376.91 Aligned_cols=216 Identities=23% Similarity=0.363 Sum_probs=182.7
Q ss_pred EeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----ccccccEEE
Q 001270 505 KDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKKIIGF 580 (1111)
Q Consensus 505 ~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~~Igy 580 (1111)
+||+++|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|+++.. ..+++.+||
T Consensus 2 ~nl~~~~~--~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 2 SNISKSFP--GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CceEEEeC--CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 68899994 4679999999999999999999999999999999999765 589999999987632 123567999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
|+|++.+++.+||+||+.++............+..++++++++.+|+.+..++.+++ |||||||||+|||||+.+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVAT-----LSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhh-----CCHHHHHHHHHHHHHHhC
Confidence 999998889999999998764211010012223345688899999998877887765 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|+||||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ |+++..|+++++
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~ 221 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEE-IFQLCDEITILRD-GQWIATQPLAGL 221 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEeecChhhC
Confidence 99999999999999999999999999998889999999999975 4578999999987 578899987664
No 239
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-38 Score=342.03 Aligned_cols=218 Identities=28% Similarity=0.443 Sum_probs=170.7
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccccE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 578 (1111)
|+++|++++|++ .+.+|+|+||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++. ...+++.+
T Consensus 1 l~~~~l~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~~~~~~~~~~i 77 (236)
T cd03253 1 IEFENVTFAYDP-GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIREVTLDSLRRAI 77 (236)
T ss_pred CEEEEEEEEeCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhhCCHHHHHhhE
Confidence 468999999953 3569999999999999999999999999999999999764 68999999998753 22456789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTL--GLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~L--GL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
+|++|++.+++ .||+||+.+..................+.+.++.+ |+++..++.+ +.|||||||||+||||
T Consensus 78 ~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~-----~~LS~G~~~rl~la~a 151 (236)
T cd03253 78 GVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERG-----LKLSGGEKQRVAIARA 151 (236)
T ss_pred EEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCC-----CcCCHHHHHHHHHHHH
Confidence 99999998885 69999998753211000000000111223334444 4444444443 4599999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||+++.. ..+|++++|.+ |++++.|+.+++.
T Consensus 152 L~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~--~~~d~~~~l~~-g~i~~~~~~~~~~ 223 (236)
T cd03253 152 ILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTI--VNADKIIVLKD-GRIVERGTHEELL 223 (236)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHH--HhCCEEEEEEC-CEEEeeCCHHHHh
Confidence 9999999999999999999999999999999876 99999999998753 45999999987 4788888877654
No 240
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.6e-39 Score=324.08 Aligned_cols=210 Identities=27% Similarity=0.372 Sum_probs=180.9
Q ss_pred EEEEEeEEEEEcC--CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc------c
Q 001270 501 EVSFKDLTLTLKG--KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~--~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------~ 572 (1111)
.|++++++++.+. +...||++|++.|++||.+||+|||||||||||-+|+|+.. +++|+|.+.|+++.. .
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARA 83 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHH
Confidence 3678888888754 34579999999999999999999999999999999999764 689999999987531 1
Q ss_pred c-ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 001270 573 S-YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 573 ~-~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
. ..+++|||||...+.|+||..||++..+.++.. ...+....+.++++.+||.+..+.++++ |||||+|||
T Consensus 84 ~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP~q-----LSGGEQQRV 155 (228)
T COG4181 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYPAQ-----LSGGEQQRV 155 (228)
T ss_pred HhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCccc-----cCchHHHHH
Confidence 2 346899999999999999999999998877642 2233445678899999999988887765 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEE
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTV 723 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv 723 (1111)
+||||++..|+|||.||||.+||..+...|.++|-.+.+ .|.|.|+||||+.. ...|+|++-|.+| +++
T Consensus 156 AiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~L--A~Rc~R~~r~~~G-~l~ 225 (228)
T COG4181 156 ALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQL--AARCDRQLRLRSG-RLV 225 (228)
T ss_pred HHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHH--HHhhhheeeeecc-eec
Confidence 999999999999999999999999999999999999865 49999999999874 4789999999875 654
No 241
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2e-38 Score=392.60 Aligned_cols=214 Identities=27% Similarity=0.431 Sum_probs=177.1
Q ss_pred EEEEEeEEEEEcCC-cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccc
Q 001270 501 EVSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~-~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 576 (1111)
.|+++||+|+|++. ++.+|+|+||+|++||.+||+||||||||||+++|+|++. +.+|+|++||+++. ...+++
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEHHhcCHHHHHh
Confidence 58999999999743 3679999999999999999999999999999999999775 68999999999853 346788
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-------VRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-------~~d~~vg~~~~rgLSGGQrQ 649 (1111)
+|+||+|++.+|. .|++|||.++... .++ +.+.++++..|+.+ -.|+.+|+ ....|||||||
T Consensus 556 ~i~~v~Q~~~lF~-gTIreNI~~g~~~-----~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQ 624 (711)
T TIGR00958 556 QVALVGQEPVLFS-GSVRENIAYGLTD-----TPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQ 624 (711)
T ss_pred hceEEecCccccc-cCHHHHHhcCCCC-----CCH----HHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHH
Confidence 9999999999985 5999999986431 111 12445555555443 24566665 35679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
|++|||||+++|+|||||||||+||+.++..+.+ .. ..+++|+|+|||+++. .+.+|++++|++ |++++.|+.+
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~aD~IivL~~-G~ive~Gt~~ 698 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERADQILVLKK-GSVVEMGTHK 698 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhCCEEEEEEC-CEEEEeeCHH
Confidence 9999999999999999999999999999999988 22 2358999999999864 478999999986 5899999998
Q ss_pred hHHH
Q 001270 730 KVEE 733 (1111)
Q Consensus 730 ~l~~ 733 (1111)
++.+
T Consensus 699 eL~~ 702 (711)
T TIGR00958 699 QLME 702 (711)
T ss_pred HHHh
Confidence 8754
No 242
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2e-38 Score=338.28 Aligned_cols=210 Identities=29% Similarity=0.475 Sum_probs=171.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++|+++.|+++.+.+|+|+||+|++|++++|+||||||||||+++|+|+.. +.+|+|.++|+++. ...+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCHHHHHhh
Confidence 368899999995433579999999999999999999999999999999999764 57899999998753 2234678
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcccccccc------CccCCCCCHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVG------TVEKRGISGGQRKRV 651 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg------~~~~rgLSGGQrQRV 651 (1111)
++|++|++.+++ .||.||+.+.... .. ...+.++++.+++.+..++.+. ......|||||||||
T Consensus 80 i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl 149 (220)
T cd03245 80 IGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAV 149 (220)
T ss_pred EEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHH
Confidence 999999998886 6999999774321 11 1234567788888776665432 012346999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||+++. + +.+|++++|.+| ++++.|
T Consensus 150 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~-~-~~~d~v~~l~~g-~i~~~~ 220 (220)
T cd03245 150 ALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL-L-DLVDRIIVMDSG-RIVADG 220 (220)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH-H-HhCCEEEEEeCC-eEeecC
Confidence 9999999999999999999999999999999999998764 899999999874 4 799999999875 666543
No 243
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=4.1e-38 Score=339.10 Aligned_cols=205 Identities=25% Similarity=0.368 Sum_probs=169.8
Q ss_pred eEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CceeEEEECCeeCCcccc-cccEEEEccCCC--CCCCCC
Q 001270 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC--KATGLILINGKNEPIHSY-KKIIGFVPQDDI--VHGNLT 592 (1111)
Q Consensus 518 IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~--~~sG~I~inG~~~~~~~~-r~~IgyV~Qd~~--l~~~LT 592 (1111)
+|+||||+|++||+++|+||||||||||+++|+|+..+. +.+|+|.++|+++..... ++.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 578999999999999999999999999999999986521 178999999987643223 357999999984 556789
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC---ccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001270 593 VEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ---TVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP 669 (1111)
Q Consensus 593 V~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~---~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEP 669 (1111)
+.||+.+...... ........+++++++.+||. +..++.+++ |||||||||+|||||+.+|+|||||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYPFQ-----LSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCChhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999987653221 11122345678999999997 455666654 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 670 TSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 670 TSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+|||+.++..+.+.|++++++ |+|||++||+++. +...+|++++|.+ |+++..|+++++.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGV-VARIADEVAVMDD-GRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 9999999999999999998764 8999999999874 5578999999986 5788999987763
No 244
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.6e-38 Score=413.72 Aligned_cols=224 Identities=27% Similarity=0.444 Sum_probs=198.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKII 578 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~I 578 (1111)
.|+++||+++|+++++.+|+||||.|++||++||+||||||||||+|+|+|+.. +++|+|.++|+++.. ...++.|
T Consensus 1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred eEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchHHHHhhhE
Confidence 488999999996434689999999999999999999999999999999999765 689999999988632 2356789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
||+||++.+++.+||+|||.+.+..+. .++.+.+++++++++.+||.+.+|+++++ |||||||||+||+||+
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~~-----LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALI 2086 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChhh-----CCHHHHHHHHHHHHHh
Confidence 999999999999999999998766542 33334445688999999999988988876 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHHH
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYFA 736 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f~ 736 (1111)
.+|+||||||||+|||+.+++.+++.|++++++|+|||++||++++ +.++||++++|.+ |+++..|+++++.+.|.
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee-~e~lcDrV~IL~~-G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEE-CEALCTRLAIMVK-GAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHHHHHhC
Confidence 9999999999999999999999999999998889999999999975 5689999999986 58899999999988774
No 245
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.4e-38 Score=333.96 Aligned_cols=198 Identities=26% Similarity=0.342 Sum_probs=169.2
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.. +++|+|+++|++......++.++|
T Consensus 2 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 77 (207)
T PRK13539 2 MLEGEDLACVRG--GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHY 77 (207)
T ss_pred EEEEEeEEEEEC--CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhhHhhcEE
Confidence 478999999994 4679999999999999999999999999999999999765 588999999987532226778999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
++|++.+++.+||.||+.+...... .. .+.++++++.+||.+..++.+++ ||||||||++|||||+.+
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPFGY-----LSAGQKRRVALARLLVSN 145 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCChhh-----cCHHHHHHHHHHHHHhcC
Confidence 9999888888999999987654321 11 12468899999998777776655 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~ 717 (1111)
|++|||||||+|||+.++..+++.|++++++|+|||++||+++. + .. |+++.+.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~-~~-~~~~~~~ 199 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-L-PG-ARELDLG 199 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-h-cc-CcEEeec
Confidence 99999999999999999999999999988789999999999874 3 33 8877773
No 246
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.4e-38 Score=375.82 Aligned_cols=220 Identities=22% Similarity=0.328 Sum_probs=183.2
Q ss_pred EEEEEeEEEEEcC---CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEEC-Cee---CCc--
Q 001270 501 EVSFKDLTLTLKG---KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILIN-GKN---EPI-- 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~---~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~in-G~~---~~~-- 571 (1111)
.|+++||+++|++ +.+.+|+||||+|++||+++|+||||||||||+++|+|+.. +++|+|.++ |.+ +..
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccc
Confidence 4889999999952 23579999999999999999999999999999999999765 578999996 532 111
Q ss_pred ----ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-----cccccccCccCCC
Q 001270 572 ----HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-----VRDSLVGTVEKRG 642 (1111)
Q Consensus 572 ----~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-----~~d~~vg~~~~rg 642 (1111)
...++.||||+|++.+++.+||+||+.+..... ....+..++++++++.+||.+ ..++.+.+
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~----- 427 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPDE----- 427 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhh-----
Confidence 123567999999998999999999998764321 122223356788999999975 45666655
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcE
Q 001270 643 ISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGL 721 (1111)
Q Consensus 643 LSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~ 721 (1111)
|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++|||++. +.+++|++++|.+ |+
T Consensus 428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~-~~~~~d~i~~l~~-G~ 505 (520)
T TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDF-VLDVCDRAALMRD-GK 505 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH-HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 8999999999975 5688999999986 57
Q ss_pred EEEecCHhhHHH
Q 001270 722 TVYHGSVKKVEE 733 (1111)
Q Consensus 722 iv~~G~~~~l~~ 733 (1111)
+++.|+++++.+
T Consensus 506 i~~~g~~~~~~~ 517 (520)
T TIGR03269 506 IVKIGDPEEIVE 517 (520)
T ss_pred EEEECCHHHHHh
Confidence 889999887643
No 247
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.4e-38 Score=369.60 Aligned_cols=221 Identities=26% Similarity=0.390 Sum_probs=190.0
Q ss_pred EEEEEeEEEEEcC---------CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC-
Q 001270 501 EVSFKDLTLTLKG---------KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP- 570 (1111)
Q Consensus 501 ~L~~~nLs~~y~~---------~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~- 570 (1111)
-++++||++.|.. +...+++||||++.+||++||+|+||||||||.|+|+|+.. |.+|+|.++|.+.+
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~~~ 357 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDLDL 357 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCccccc
Confidence 4789999999973 22578999999999999999999999999999999999876 58999999997731
Q ss_pred ----cccccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCC
Q 001270 571 ----IHSYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGI 643 (1111)
Q Consensus 571 ----~~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgL 643 (1111)
....++.+-+||||+ .|.|.+||+++|......... ....+..+++.++++.+||.. ..++++++ |
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP~e-----l 430 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRYPHE-----L 430 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcCchh-----c
Confidence 224567899999986 578999999999887654332 224566678999999999985 56776654 9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEE
Q 001270 644 SGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLT 722 (1111)
Q Consensus 644 SGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~i 722 (1111)
||||||||+|||||+.+|++|++|||||+||+..+..|+++|+++.++ |.|.|+||||+.. +..+|||+++|.+ |++
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~~-G~i 508 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMYD-GRI 508 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEEC-CeE
Confidence 999999999999999999999999999999999999999999999866 9999999999985 5689999999986 589
Q ss_pred EEecCHhhHH
Q 001270 723 VYHGSVKKVE 732 (1111)
Q Consensus 723 v~~G~~~~l~ 732 (1111)
|+.|+.+++.
T Consensus 509 VE~G~~~~v~ 518 (539)
T COG1123 509 VEEGPTEKVF 518 (539)
T ss_pred EEeCCHHHHh
Confidence 9999887764
No 248
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-37 Score=342.25 Aligned_cols=217 Identities=27% Similarity=0.391 Sum_probs=178.3
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECC------eeCC---cc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILING------KNEP---IH 572 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG------~~~~---~~ 572 (1111)
|+++|++++| +++.+|+||||+|.+||+++|+|+||||||||+++|+|+.. +.+|+|.++| ++.. ..
T Consensus 11 i~~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~--~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 11 FNISRLYLYI--NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred eeeeeEEEec--CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCcCceeEcCEEEECCcccccCCHH
Confidence 7899999999 45679999999999999999999999999999999999765 4666666555 4331 12
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc----cccccccCccCCCCCHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT----VRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~----~~d~~vg~~~~rgLSGGQr 648 (1111)
.+++.++|++|++.+++.+||+||+.+...... ...+.+....++++++.+|+.+ ..++.+ +.||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSPA-----SQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCCc-----ccCCHHHH
Confidence 356789999999999999999999998754211 1122333456788999999963 344444 45999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++. +.+.+|++++|.+ |+++..|+.
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~-~~~~~d~v~~l~~-g~i~~~g~~ 236 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQ-VARVADYVAFLYN-GELVEWGSS 236 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999999864 6899999999874 4578999999986 588899998
Q ss_pred hhHH
Q 001270 729 KKVE 732 (1111)
Q Consensus 729 ~~l~ 732 (1111)
+++.
T Consensus 237 ~~~~ 240 (257)
T PRK14246 237 NEIF 240 (257)
T ss_pred HHHH
Confidence 7664
No 249
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.4e-38 Score=343.97 Aligned_cols=209 Identities=26% Similarity=0.393 Sum_probs=176.2
Q ss_pred EEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccccEE
Q 001270 503 SFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKIIG 579 (1111)
Q Consensus 503 ~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~Ig 579 (1111)
+++||++. .+|+||||+|++||+++|+||||||||||+++|+|+.+ .+|+|.++|+++.. ..+++.++
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~ 72 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRA 72 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheE
Confidence 45677763 27999999999999999999999999999999999763 48999999987532 23456799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|++|++.+++.+||+||+.+..... ....+..+.++++++.+||.+..++.+++ |||||||||+|||||+.
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRSVNQ-----LSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCCccc-----CCHHHHHHHHHHHHHhc
Confidence 9999988888899999998863211 11222345678999999998877777665 99999999999999998
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 660 -------EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 660 -------~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|++++|.+ |++++.|+.+++
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~ 220 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNH-TLRHADRVWLLKQ-GKLLASGRRDEV 220 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEECCHHHH
Confidence 679999999999999999999999999998779999999999874 5689999999986 578899988765
No 250
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=7.9e-38 Score=375.25 Aligned_cols=223 Identities=20% Similarity=0.330 Sum_probs=184.3
Q ss_pred EEEEEeEEEEEcCC--cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeCCcc---
Q 001270 501 EVSFKDLTLTLKGK--NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNEPIH--- 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~--~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~~~~--- 572 (1111)
.|+++||+++|+++ .+.+|+||||+|++||++||+|||||||||||++|+|++++. +++|+|.++|+++...
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 37899999999532 357999999999999999999999999999999999987532 2689999999875321
Q ss_pred ---ccc-ccEEEEccCCC--CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc---cccccccCccCCCC
Q 001270 573 ---SYK-KIIGFVPQDDI--VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT---VRDSLVGTVEKRGI 643 (1111)
Q Consensus 573 ---~~r-~~IgyV~Qd~~--l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~---~~d~~vg~~~~rgL 643 (1111)
..+ +.||||+|++. +++.+||.||+.+...... .....+..++++++++.+||.+ ..++.+++ |
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~-----L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDYPHQ-----L 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcc-----c
Confidence 122 57999999975 5667899999986543211 1233344567889999999975 34666655 9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEE
Q 001270 644 SGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLT 722 (1111)
Q Consensus 644 SGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~i 722 (1111)
||||||||+|||||+.+|++|||||||++||+.++..++++|++++++ |+|||+|||+++. +.+++|++++|++ |++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~dri~~l~~-G~i 235 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSI-VRKLADRVAVMQN-GRC 235 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH-HHHhcCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 8999999999975 4578999999987 578
Q ss_pred EEecCHhhHH
Q 001270 723 VYHGSVKKVE 732 (1111)
Q Consensus 723 v~~G~~~~l~ 732 (1111)
++.|+++++.
T Consensus 236 ~~~g~~~~~~ 245 (529)
T PRK15134 236 VEQNRAATLF 245 (529)
T ss_pred EEeCCHHHHh
Confidence 8999987763
No 251
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-38 Score=367.40 Aligned_cols=216 Identities=25% Similarity=0.436 Sum_probs=185.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC---Cccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE---PIHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~r~~ 577 (1111)
.++++||+|+|++...++|+|+||++++||.+||+|+||||||||+.+|.|.. .+.+|+|.+||.++ +.+.+++.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~--~~~~G~i~~~g~~~~~l~~~~~~e~ 413 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW--DPQQGSITLNGVEIASLDEQALRET 413 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc--CCCCCeeeECCcChhhCChhhHHHH
Confidence 68999999999887778999999999999999999999999999999999955 47899999999875 33447889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV-------RDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-------~d~~vg~~~~rgLSGGQrQR 650 (1111)
|++++|...+|.. |+++||.++.... +. +.+.++++++||++. .++.+|+ +++.||||||||
T Consensus 414 i~vl~Qr~hlF~~-Tlr~NL~lA~~~A-----sD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rR 482 (573)
T COG4987 414 ISVLTQRVHLFSG-TLRDNLRLANPDA-----SD----EELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRR 482 (573)
T ss_pred HhhhccchHHHHH-HHHHHHhhcCCCC-----CH----HHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHH
Confidence 9999999999964 9999999875432 22 235566777777543 3446675 677899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
++|||+|++|.+++||||||.|||+.+++++++.|.+-+ +|+|+|+|||++.. .+.+|+|++|++ |+++++|...+
T Consensus 483 LAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~--le~~drIivl~~-Gkiie~G~~~~ 558 (573)
T COG4987 483 LALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRG--LERMDRIIVLDN-GKIIEEGTHAE 558 (573)
T ss_pred HHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEeccccc--HhhcCEEEEEEC-CeeeecCCHHh
Confidence 999999999999999999999999999999999998755 58999999999875 378999999987 58999999998
Q ss_pred HHH
Q 001270 731 VEE 733 (1111)
Q Consensus 731 l~~ 733 (1111)
+.+
T Consensus 559 Ll~ 561 (573)
T COG4987 559 LLA 561 (573)
T ss_pred hhc
Confidence 764
No 252
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=7.4e-38 Score=366.74 Aligned_cols=227 Identities=23% Similarity=0.366 Sum_probs=191.0
Q ss_pred EEEEEeEEEEEcCCc--ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CceeEEEECCeeCC---cc-
Q 001270 501 EVSFKDLTLTLKGKN--KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC--KATGLILINGKNEP---IH- 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~--k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~--~~sG~I~inG~~~~---~~- 572 (1111)
-|+++||++.|.... ..+++||||+|.+||++||+|.|||||||+.++|.|+++.. ..+|+|.++|+++. ..
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 488999999997433 36999999999999999999999999999999999987643 25899999998642 11
Q ss_pred ---cccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 001270 573 ---SYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 573 ---~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQ 647 (1111)
...+.|+||||++ .+.|-+||.+-|.-....+.. ...++..+++.++++.+||.+.... +..+++|||||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~ 159 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGM 159 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchH
Confidence 1346899999996 456778999988776655432 2255666788999999999876554 23567799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|+||||+.. +.+++|++++|.+ |++++.|
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V-va~~aDrv~Vm~~-G~iVE~G 237 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYK-GEIVETG 237 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH-HHHhcCeEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999975 59999999999985 5799999999986 5899999
Q ss_pred CHhhHHHH
Q 001270 727 SVKKVEEY 734 (1111)
Q Consensus 727 ~~~~l~~~ 734 (1111)
+++++.+.
T Consensus 238 ~~~~i~~~ 245 (539)
T COG1123 238 PTEEILSN 245 (539)
T ss_pred CHHHHHhc
Confidence 99998643
No 253
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.2e-38 Score=413.03 Aligned_cols=226 Identities=25% Similarity=0.411 Sum_probs=184.4
Q ss_pred EEEEEeEEEEEcCC-cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------------
Q 001270 501 EVSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC----------------------- 556 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~-~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~----------------------- 556 (1111)
.|+|+||+|+|+.+ +++||+||||+|++|+.+||+||||||||||+++|.|++.+.
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 69999999999743 357999999999999999999999999999999999987641
Q ss_pred -----------------------------CceeEEEECCeeC---CcccccccEEEEccCCCCCCCCCHHHHHHHHHHhh
Q 001270 557 -----------------------------KATGLILINGKNE---PIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCR 604 (1111)
Q Consensus 557 -----------------------------~~sG~I~inG~~~---~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~ 604 (1111)
+.+|+|++||.++ +...+|+.||||+|++.+| +.|++|||.++....
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~~a 1323 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKEDA 1323 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCCCC
Confidence 2589999999986 4457899999999999999 469999999974321
Q ss_pred ccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 001270 605 LSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRA 684 (1111)
Q Consensus 605 ~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~ 684 (1111)
..+.+.++.+.+.+++++.. |.+-.|+.+|+ .+..||||||||++|||||+++|+|||||||||+||+.+++.|.+.
T Consensus 1324 t~eeI~~A~k~A~l~~fI~~--LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1324 TREDVKRACKFAAIDEFIES--LPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred CHHHHHHHHHHcCCHHHHHh--CccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 11222222222333444443 34446788886 4566999999999999999999999999999999999999999999
Q ss_pred HHHHH-hCCCEEEEEecCccHHHHHhcCeEEEEeCC---cE-EEEecCHhhHH
Q 001270 685 LRREA-LEGVNICLVVHQPSYALFRMFDDLVLLAKG---GL-TVYHGSVKKVE 732 (1111)
Q Consensus 685 L~~la-~~G~TVIivtHq~~~~i~~~~D~vilL~~G---G~-iv~~G~~~~l~ 732 (1111)
|.++. .+++|+|+|+|+++. .+.+|+|++|++| |+ +++.|+.+++.
T Consensus 1401 L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1401 IVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 99986 368999999999863 4889999999882 45 55899998875
No 254
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=8.5e-38 Score=334.66 Aligned_cols=204 Identities=24% Similarity=0.336 Sum_probs=168.1
Q ss_pred EEEEeEEEEEcC----C-cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEEC--Ce--eCC--
Q 001270 502 VSFKDLTLTLKG----K-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILIN--GK--NEP-- 570 (1111)
Q Consensus 502 L~~~nLs~~y~~----~-~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~in--G~--~~~-- 570 (1111)
|+++||+++|+. + .+.+|+|+||+|++||+++|+||||||||||+++|+|++. +++|+|.++ |. ++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLAQA 79 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCccchhhc
Confidence 678999999952 1 2479999999999999999999999999999999999765 578999998 42 321
Q ss_pred -cc---c-ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCC
Q 001270 571 -IH---S-YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV-RDSLVGTVEKRGIS 644 (1111)
Q Consensus 571 -~~---~-~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~rgLS 644 (1111)
.. . .++.+||++|++.+++.+||+||+.+..... ........+.+.++++.+||.+. .++.+. .||
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS 151 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPPA-----TFS 151 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCcc-----cCC
Confidence 11 1 2357999999999999999999998864321 12222334467889999999763 455554 499
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEE
Q 001270 645 GGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLL 716 (1111)
Q Consensus 645 GGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL 716 (1111)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+++|+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~-~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEV-RELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceeEec
Confidence 999999999999999999999999999999999999999999998779999999999764 44689998876
No 255
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.7e-38 Score=330.45 Aligned_cols=195 Identities=26% Similarity=0.321 Sum_probs=165.9
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 579 (1111)
|+++|+++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ..+++.++
T Consensus 1 l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRG--ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNIL 76 (198)
T ss_pred CEEEEEEEEEC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheE
Confidence 46799999994 4679999999999999999999999999999999999764 688999999987532 23457899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|++|++.+++.+||.||+.+...... .. ...++++++.+||.+..++.+++ |||||||||+|||||+.
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~----~~---~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~ 144 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHG----GA---QRTIEDALAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLS 144 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcC----Cc---HHHHHHHHHHcCCHHHhcCChhh-----cCHHHHHHHHHHHHHhc
Confidence 99999988888999999988654321 11 23467889999998888877765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEE
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVL 715 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vil 715 (1111)
+|++|||||||+|||+.++..+.+.|++++++|.|||++||++... .+++++.
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~---~~~~~~~ 197 (198)
T TIGR01189 145 RAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL---VEARELR 197 (198)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc---cceEEee
Confidence 9999999999999999999999999999887899999999998532 3455543
No 256
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=341.37 Aligned_cols=217 Identities=23% Similarity=0.303 Sum_probs=178.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC---ceeEEEECCeeCC-------
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACK---ATGLILINGKNEP------- 570 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~---~sG~I~inG~~~~------- 570 (1111)
.|+++||+++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+..+.+ ++|+|.++|.+..
T Consensus 16 ~l~~~~l~~~~~--~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 16 KSEVNKLNFYYG--GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred eEEEEEEEEEEC--CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 478999999994 4579999999999999999999999999999999999865322 7899999997642
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccch-HHHHHHHHHHHHHHcCCC----ccccccccCccCCCCCH
Q 001270 571 IHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLA-KADKVLVIERVIDTLGLQ----TVRDSLVGTVEKRGISG 645 (1111)
Q Consensus 571 ~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~-~~~~~~~v~~vL~~LGL~----~~~d~~vg~~~~rgLSG 645 (1111)
...+++.|+|++|++.+++. ||+||+.++.... ... .....+.++++++.+++. +..++.++ .|||
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LS~ 164 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLGDLAF-----NLSG 164 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcc-----cCCH
Confidence 12356789999999998875 9999998865321 111 112234567788888774 33444444 4999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEe
Q 001270 646 GQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYH 725 (1111)
Q Consensus 646 GQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~ 725 (1111)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+.+|++++|.+ |+++..
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~-~~~~~d~i~~l~~-G~i~~~ 241 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQ-AARVSDYTAYMYM-GELIEF 241 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999865 6899999999875 5578999999976 578899
Q ss_pred cCHhhH
Q 001270 726 GSVKKV 731 (1111)
Q Consensus 726 G~~~~l 731 (1111)
|+.+++
T Consensus 242 g~~~~~ 247 (265)
T PRK14252 242 GATDTI 247 (265)
T ss_pred CCHHHH
Confidence 998765
No 257
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=348.65 Aligned_cols=221 Identities=25% Similarity=0.363 Sum_probs=178.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC---CCceeEEEECCeeCCc-----c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA---CKATGLILINGKNEPI-----H 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~---~~~sG~I~inG~~~~~-----~ 572 (1111)
.|+++||++.|+ ++.+|+++||+|++||+++|+|+|||||||||++|+|+..+ .+.+|+|.++|.++.. .
T Consensus 45 ~l~i~nl~~~~~--~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~ 122 (305)
T PRK14264 45 KLSVEDLDVYYG--DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV 122 (305)
T ss_pred eEEEEEEEEEeC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence 478999999994 46799999999999999999999999999999999998642 2579999999987532 2
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhcc---------ccch-HHHHHHHHHHHHHHcCCCc----cccccccCc
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLS---------AHLA-KADKVLVIERVIDTLGLQT----VRDSLVGTV 638 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~---------~~~~-~~~~~~~v~~vL~~LGL~~----~~d~~vg~~ 638 (1111)
.+++.|+||+|++.+++ .||+||+.++...... .... .....+.+.++++.+++.+ ..+..+
T Consensus 123 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 198 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNA--- 198 (305)
T ss_pred HHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcc---
Confidence 34678999999998887 5999999987532100 0011 1222356788899998843 334443
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEE-EEe
Q 001270 639 EKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLV-LLA 717 (1111)
Q Consensus 639 ~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vi-lL~ 717 (1111)
+.|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.+++|+++ +|.
T Consensus 199 --~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~-i~~~~d~i~~~l~ 274 (305)
T PRK14264 199 --LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQ-AARISDQTAVFLT 274 (305)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHH-HHHhcCEEEEEec
Confidence 45999999999999999999999999999999999999999999999876 4899999999975 457899975 455
Q ss_pred CCcEEEEecCHhhHH
Q 001270 718 KGGLTVYHGSVKKVE 732 (1111)
Q Consensus 718 ~GG~iv~~G~~~~l~ 732 (1111)
+ |++++.|+++++.
T Consensus 275 ~-G~i~~~g~~~~~~ 288 (305)
T PRK14264 275 G-GELVEYDDTDKIF 288 (305)
T ss_pred C-CEEEEeCCHHHHH
Confidence 4 6889999987653
No 258
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-38 Score=381.68 Aligned_cols=220 Identities=20% Similarity=0.332 Sum_probs=184.0
Q ss_pred EEEEEeEEEEEcCC--cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC--------
Q 001270 501 EVSFKDLTLTLKGK--NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP-------- 570 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~--~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~-------- 570 (1111)
.|+++||+++|... ...+|+||||+|++||++||+|+||||||||+++|+|++. +.+|+|.++|..+.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEeccccccccc
Confidence 48899999999532 3479999999999999999999999999999999999875 57899999986331
Q ss_pred -----cc---cc-cccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc---ccccccc
Q 001270 571 -----IH---SY-KKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT---VRDSLVG 636 (1111)
Q Consensus 571 -----~~---~~-r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~---~~d~~vg 636 (1111)
.. .+ ++.||||+|++ .+++.+||.||+.++..... .....+..+++.++++.+||.+ ..++++.
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 00 12 24799999997 67888999999999765321 1233344567889999999953 4566665
Q ss_pred CccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEE
Q 001270 637 TVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVL 715 (1111)
Q Consensus 637 ~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vil 715 (1111)
+ |||||||||+|||||+.+|+||||||||++||+.++..++++|++++++ |+|||+||||+.. +.+++|++++
T Consensus 168 ~-----LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~-~~~~adri~v 241 (623)
T PRK10261 168 Q-----LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGV-VAEIADRVLV 241 (623)
T ss_pred c-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEE
Confidence 5 9999999999999999999999999999999999999999999999765 9999999999975 4589999999
Q ss_pred EeCCcEEEEecCHhhH
Q 001270 716 LAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 716 L~~GG~iv~~G~~~~l 731 (1111)
|.+ |++++.|+++++
T Consensus 242 l~~-G~i~~~g~~~~~ 256 (623)
T PRK10261 242 MYQ-GEAVETGSVEQI 256 (623)
T ss_pred eeC-CeecccCCHHHh
Confidence 986 578889998776
No 259
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.3e-38 Score=376.05 Aligned_cols=221 Identities=24% Similarity=0.374 Sum_probs=184.7
Q ss_pred EEEEEeEEEEEcC---------CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc
Q 001270 501 EVSFKDLTLTLKG---------KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~---------~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~ 571 (1111)
.|+++||++.|+. +.+.+|+||||+|++||+++|+||||||||||+|+|+|+. +.+|+|+++|+++..
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~---~~~G~i~~~g~~i~~ 351 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI---NSQGEIWFDGQPLHN 351 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC---CCCcEEEECCEEccc
Confidence 4889999999952 1357999999999999999999999999999999999976 268999999987532
Q ss_pred ---c---cccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCC
Q 001270 572 ---H---SYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRG 642 (1111)
Q Consensus 572 ---~---~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rg 642 (1111)
. .+++.||||+|++ .+++.+||.||+.++...+.. .....+...+++++++.+||. +..++.+++
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 425 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYPAE----- 425 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCCcc-----
Confidence 1 2356799999997 478889999999986532210 122233345678999999997 467777765
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcE
Q 001270 643 ISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGL 721 (1111)
Q Consensus 643 LSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~ 721 (1111)
|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++|||++. +.+++|++++|.+ |+
T Consensus 426 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~-~~~~~d~i~~l~~-G~ 503 (529)
T PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV-VRALCHQVIVLRQ-GE 503 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhcCeEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999865 8999999999975 4578999999987 47
Q ss_pred EEEecCHhhHH
Q 001270 722 TVYHGSVKKVE 732 (1111)
Q Consensus 722 iv~~G~~~~l~ 732 (1111)
+++.|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 88999987763
No 260
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=9.2e-38 Score=376.97 Aligned_cols=216 Identities=27% Similarity=0.459 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||+++|+..++.+|+|+|++|++||.++|+|+||||||||+++|+|++. +.+|+|++||.+++ ...+++.
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeHHhcCHHHHHhh
Confidence 589999999997555679999999999999999999999999999999999775 68899999998753 3467889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-------VRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-------~~d~~vg~~~~rgLSGGQrQR 650 (1111)
|+||+|++.+|+ .|++|||.++.. ....+ +.++++++.+|+.+ -.|+.+++ ..+.||||||||
T Consensus 408 i~~v~Q~~~lf~-~Ti~~Ni~~~~~----~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGqrQR 477 (571)
T TIGR02203 408 VALVSQDVVLFN-DTIANNIAYGRT----EQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGE-NGVLLSGGQRQR 477 (571)
T ss_pred ceEEccCccccc-ccHHHHHhcCCC----CCCCH----HHHHHHHHHcChHHHHHhCcCcccceecC-CCCcCCHHHHHH
Confidence 999999999985 499999987632 01121 23455566655543 24566665 356799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
++||||++++|+|||||||||+||+.+++.+++.|+++. +++|+|+|||+++ ..+.+|++++|++ |+++..|+.++
T Consensus 478 iaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~-g~i~~~g~~~~ 553 (571)
T TIGR02203 478 LAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDD-GRIVERGTHNE 553 (571)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeC-CEEEeeCCHHH
Confidence 999999999999999999999999999999999999874 5799999999986 3588999999986 57899999988
Q ss_pred HH
Q 001270 731 VE 732 (1111)
Q Consensus 731 l~ 732 (1111)
+.
T Consensus 554 l~ 555 (571)
T TIGR02203 554 LL 555 (571)
T ss_pred HH
Confidence 74
No 261
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-38 Score=316.48 Aligned_cols=217 Identities=27% Similarity=0.425 Sum_probs=190.8
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---------c
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---------I 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---------~ 571 (1111)
.|.++++++.| +...+|.||+++.+.||.+.++||||||||||++.|.-+.. |.+|+..|-|...+ .
T Consensus 2 sirv~~in~~y--g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~fd~s~~~~~k~i 77 (242)
T COG4161 2 SIQLNGINCFY--GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred ceEEccccccc--ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEecccccccccCccHHHH
Confidence 57899999999 56689999999999999999999999999999999987543 68999999886432 1
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 001270 572 HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 572 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
..+|+.+|+|||...++|+|||.|||.-+. .+. .++++.+...++.++++.|.|.+.+|+.+-. |||||+|||
T Consensus 78 ~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~plh-----lsggqqqrv 150 (242)
T COG4161 78 RDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYPLH-----LSGGQQQRV 150 (242)
T ss_pred HHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCcee-----cccchhhhH
Confidence 247889999999999999999999997643 221 2466777778889999999999999998765 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
+|||||+++|++|++||||++|||+-..++.++|++++..|.|-+++||..+.+ .+.+.+++.|++ |+|++.|+...
T Consensus 151 aiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va-~k~as~vvyme~-g~ive~g~a~~ 227 (242)
T COG4161 151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVA-RKTASRVVYMEN-GHIVEQGDASC 227 (242)
T ss_pred HHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHH-HhhhhheEeeec-CeeEeecchhh
Confidence 999999999999999999999999999999999999999999999999998764 578999999987 58999998653
No 262
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7.8e-38 Score=386.42 Aligned_cols=223 Identities=25% Similarity=0.439 Sum_probs=179.8
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 576 (1111)
..|+++||+|+|+.+++.+|+|+||+|++||.+||+|+||||||||+|+|+|++. |.+|+|++||.++. ...+|+
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVDLAIADPAWLRR 531 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEehhhCCHHHHHH
Confidence 3689999999997555679999999999999999999999999999999999765 68899999999753 346788
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.||||+|++.+|+ .|++|||.++........+.+..+...+++.++.+ ..-.|+.+++ ....||||||||++||||
T Consensus 532 ~i~~v~q~~~lf~-~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~l--p~gl~t~i~~-~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 532 QMGVVLQENVLFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISEL--PQGYNTEVGE-KGANLSGGQRQRIAIARA 607 (694)
T ss_pred hCeEEccCCeehh-hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhC--cCccCcEecC-CCCCCCHHHHHHHHHHHH
Confidence 9999999999986 59999998753211111111111222233344433 1224555665 356799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+++|+|||||||||+||+.++..+.+.|+++. +++|+|++||+++. .+.+|++++|++ |++++.|+.+++.
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~ii~l~~-G~i~~~g~~~~l~ 679 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEK-GQIAESGRHEELL 679 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCCEEEEEeC-CEEEEeCCHHHHH
Confidence 999999999999999999999999999999874 68999999999874 367999999987 5889999988874
No 263
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6e-38 Score=330.99 Aligned_cols=194 Identities=24% Similarity=0.336 Sum_probs=166.7
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 579 (1111)
|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.. +++|+|+++|+++.. ..+++.++
T Consensus 2 l~~~~l~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYH--DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeC--CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHHHHhheE
Confidence 67899999994 4679999999999999999999999999999999999765 689999999987532 24567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|++|+..+++.+||+||+.+..... .. ...++++++.+++.+..++.+++ |||||||||+|||||+.
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~~rv~laral~~ 144 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPCGL-----LSSGQKRQVALLRLWMS 144 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCChhh-----cCHHHHHHHHHHHHHhc
Confidence 9999998888899999999864211 11 13578899999998777776655 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEE
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLV 714 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vi 714 (1111)
+|++|||||||+|||+.++..+.+.|++++++|.|||++||++.. ...+|..+
T Consensus 145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 999999999999999999999999999987789999999999864 35666544
No 264
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.3e-37 Score=377.75 Aligned_cols=214 Identities=26% Similarity=0.427 Sum_probs=177.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||+|+|++ .+.+|+|+|+++++||.++|+|+||||||||+|+|+|++. |.+|+|++||.++. ...+++.
T Consensus 334 ~I~~~~vsf~y~~-~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~ 410 (588)
T PRK13657 334 AVEFDDVSFSYDN-SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD--PQSGRILIDGTDIRTVTRASLRRN 410 (588)
T ss_pred eEEEEEEEEEeCC-CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEhhhCCHHHHHhh
Confidence 5899999999963 3569999999999999999999999999999999999775 68999999998753 3467889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-------TVRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-------~~~d~~vg~~~~rgLSGGQrQR 650 (1111)
|+||+|++.+|. .|++|||.++... ..++ .+.++++.+|+. +-.|+.+++ ....||||||||
T Consensus 411 i~~v~Q~~~lf~-~Ti~~Ni~~~~~~-----~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QR 479 (588)
T PRK13657 411 IAVVFQDAGLFN-RSIEDNIRVGRPD-----ATDE----EMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQR 479 (588)
T ss_pred eEEEecCccccc-ccHHHHHhcCCCC-----CCHH----HHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHH
Confidence 999999999985 5999999886321 1111 133344444433 234555665 355699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
++|||||+++|+|||||||||+||+.++..+++.|+++. +++|||+|||+++. .+.+|++++|++ |+++..|+.++
T Consensus 480 ialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~--~~~~D~ii~l~~-G~i~~~g~~~~ 555 (588)
T PRK13657 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLST--VRNADRILVFDN-GRVVESGSFDE 555 (588)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHH--HHhCCEEEEEEC-CEEEEeCCHHH
Confidence 999999999999999999999999999999999998874 57999999999863 588999999987 57889999887
Q ss_pred HH
Q 001270 731 VE 732 (1111)
Q Consensus 731 l~ 732 (1111)
+.
T Consensus 556 l~ 557 (588)
T PRK13657 556 LV 557 (588)
T ss_pred HH
Confidence 74
No 265
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.9e-37 Score=352.73 Aligned_cols=231 Identities=26% Similarity=0.407 Sum_probs=197.2
Q ss_pred CCceEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC---Cccc
Q 001270 497 RPLIEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE---PIHS 573 (1111)
Q Consensus 497 ~~~i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~ 573 (1111)
.|.-.|.++++++.-++.++++|++|||.+.+||.+|||||||||||||.|+|.|..+ |.+|.|++||-++ +.+.
T Consensus 330 ~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~G~VRLDga~l~qWd~e~ 407 (580)
T COG4618 330 APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQ 407 (580)
T ss_pred CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCCCcEEecchhhhcCCHHH
Confidence 3456799999999877778899999999999999999999999999999999999654 6899999999775 3456
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaI 653 (1111)
+-++|||+|||..||+. ||.|||.-..+...++.+-++.+.+.++|++-. |.+-.|+.+|+ ....||||||||+++
T Consensus 408 lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~--lP~GYdT~iG~-~G~~LSgGQRQRIaL 483 (580)
T COG4618 408 LGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILR--LPQGYDTRIGE-GGATLSGGQRQRIAL 483 (580)
T ss_pred hccccCcCcccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHh--CcCCccCccCC-CCCCCCchHHHHHHH
Confidence 77899999999999976 999999643322222334455556667777754 55557888996 567899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
||||..+|.+++||||-|+||...+..+.+.|.+++++|.|+|+|+|.|+ +...+|++++|++ |++-.+|+.+|+..
T Consensus 484 ARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~-G~~~~FG~r~eVLa 560 (580)
T COG4618 484 ARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQD-GRIAAFGPREEVLA 560 (580)
T ss_pred HHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecC-ChHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 4578999999976 68899999999987
Q ss_pred HHH
Q 001270 734 YFA 736 (1111)
Q Consensus 734 ~f~ 736 (1111)
.+.
T Consensus 561 ~~~ 563 (580)
T COG4618 561 KVL 563 (580)
T ss_pred Hhc
Confidence 654
No 266
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-38 Score=375.20 Aligned_cols=223 Identities=22% Similarity=0.337 Sum_probs=184.0
Q ss_pred EEEEEeEEEEEcC-CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----cccc
Q 001270 501 EVSFKDLTLTLKG-KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYK 575 (1111)
Q Consensus 501 ~L~~~nLs~~y~~-~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r 575 (1111)
.|+++||++.|+. +++.+|+||||+|++||+++|+||||||||||+|+|+|+..+ +++|+|.++|+++.. ...+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHH
Confidence 4889999999842 235699999999999999999999999999999999997642 378999999987532 1235
Q ss_pred ccEEEEccCC---CCCCCCCHHHHHHHHHHhhccc-c-chHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHH
Q 001270 576 KIIGFVPQDD---IVHGNLTVEENLWFHARCRLSA-H-LAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 576 ~~IgyV~Qd~---~l~~~LTV~EnL~f~a~~~~~~-~-~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQ 649 (1111)
+.||||+|++ .+++.+||.||+.++....... . ....+..++++++++.+||. +..++.+++ |||||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~kq 412 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIAR-----LSGGNQQ 412 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccccc-----CCHHHHH
Confidence 6799999995 4778899999998764211100 0 12223335688999999996 567887766 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||++|||++. +.+++|++++|.+ |+++..|+.+
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~-~~~~~d~v~~l~~-G~i~~~~~~~ 490 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPE-VLGLSDRVLVMHE-GKLKGDLINH 490 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEEeccc
Confidence 9999999999999999999999999999999999999998889999999999975 4588999999987 5788888776
Q ss_pred hH
Q 001270 730 KV 731 (1111)
Q Consensus 730 ~l 731 (1111)
++
T Consensus 491 ~~ 492 (506)
T PRK13549 491 NL 492 (506)
T ss_pred cC
Confidence 54
No 267
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.6e-38 Score=347.21 Aligned_cols=215 Identities=23% Similarity=0.369 Sum_probs=179.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||+++|..+...+|+||||+|++||+++|+|+||||||||+++|+|+.. .+|+|+++|.++. ...+++.
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCHHHHhhh
Confidence 478999999996545679999999999999999999999999999999999863 5799999998753 2356788
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccC------ccCCCCCHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGT------VEKRGISGGQRKRV 651 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~------~~~rgLSGGQrQRV 651 (1111)
|+||||++.+|+. ||+||+..... ... +.+.++++.+||.+..++.++. .....|||||||||
T Consensus 79 i~~v~q~~~lf~~-tv~~nl~~~~~------~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl 147 (275)
T cd03289 79 FGVIPQKVFIFSG-TFRKNLDPYGK------WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLM 147 (275)
T ss_pred EEEECCCcccchh-hHHHHhhhccC------CCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 9999999999874 99999964211 111 2356778888987766655432 12346999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+|||||+.+|+||||||||++||+.+...+.+.|+++. +++|||+|+|+++. + ..+|++++|.+ |++++.|+++++
T Consensus 148 ~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~-i-~~~dri~vl~~-G~i~~~g~~~~l 223 (275)
T cd03289 148 CLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEA-M-LECQRFLVIEE-NKVRQYDSIQKL 223 (275)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHH-H-HhCCEEEEecC-CeEeecCCHHHH
Confidence 99999999999999999999999999999999999864 58999999999864 3 46999999976 578999999987
Q ss_pred HH
Q 001270 732 EE 733 (1111)
Q Consensus 732 ~~ 733 (1111)
..
T Consensus 224 ~~ 225 (275)
T cd03289 224 LN 225 (275)
T ss_pred hh
Confidence 53
No 268
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-37 Score=321.66 Aligned_cols=169 Identities=34% Similarity=0.539 Sum_probs=152.5
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 579 (1111)
|+++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.. +.+|+|.++|++... ..+++.++
T Consensus 1 l~~~~l~~~~~--~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYG--KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIG 76 (173)
T ss_pred CEEEEEEEEEC--CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEE
Confidence 46899999994 3579999999999999999999999999999999999765 578999999987532 24567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|++|++.+++.+||.||+. |||||||||+|||||+.
T Consensus 77 ~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~laral~~ 112 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQALLH 112 (173)
T ss_pred EEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHHHHHc
Confidence 9999999998899999973 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|++|
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~-~~~~~d~i~~l~~g 171 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEE-AERLCDRVAILNNG 171 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHhCCEEEEEeCC
Confidence 999999999999999999999999999998778999999999874 45789999999875
No 269
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=4e-38 Score=337.65 Aligned_cols=208 Identities=25% Similarity=0.403 Sum_probs=169.3
Q ss_pred EEEEEeEEEEEcCC-cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccc
Q 001270 501 EVSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~-~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 576 (1111)
.|+++|++++|++. .+.+|+++||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++. ....++
T Consensus 11 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred eEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCchHHcCHHHHHh
Confidence 47899999999643 2469999999999999999999999999999999999765 68899999998642 123467
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTL--GLQTVRDSLVGTVEKRGISGGQRKRVHVG 654 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~L--GL~~~~d~~vg~~~~rgLSGGQrQRVaIA 654 (1111)
.++|++|++.+++ .||+||+.++.................++++++.+ |+.+..++.+. .|||||||||+||
T Consensus 89 ~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~-----~LSgG~~qrv~la 162 (226)
T cd03248 89 KVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGS-----QLSGGQKQRVAIA 162 (226)
T ss_pred hEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCC-----cCCHHHHHHHHHH
Confidence 8999999998876 69999998754311100111111122356788888 78776666655 4999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 655 LEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 655 rALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
|+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++.. ..+|++++|.+|
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~--~~~d~i~~l~~g 224 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTV--ERADQILVLDGG 224 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHH--HhCCEEEEecCC
Confidence 999999999999999999999999999999999865 68999999999753 459999999865
No 270
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-38 Score=326.83 Aligned_cols=219 Identities=29% Similarity=0.413 Sum_probs=186.7
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccccE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 578 (1111)
|+.+||+++. ..+.+|++||+++++||++||+||||||||||||.|+|... |.+|++.+||.+.+ ...+.++-
T Consensus 2 i~a~nls~~~--~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~~~lA~~r 77 (259)
T COG4559 2 IRAENLSYSL--AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPPEELARHR 77 (259)
T ss_pred eeeeeeEEEe--ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCHHHHHHHh
Confidence 6789999998 55789999999999999999999999999999999999654 68999999998864 23456788
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
+.+||+..+-...||+|-+.++..-..... ...+..+.+++.|...++.++..+.+.. |||||||||.+||.|+
T Consensus 78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~-~~~e~~~i~~~ala~~d~~~la~R~y~~-----LSGGEqQRVqlARvLa 151 (259)
T COG4559 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGR-EPEEDERIAAQALAATDLSGLAGRDYRT-----LSGGEQQRVQLARVLA 151 (259)
T ss_pred hhcccCcccccceEHHHHHHhcccccccCC-CchhhHHHHHHHHHHcChhhhhccchhh-----cCchHHHHHHHHHHHH
Confidence 999999888666799999999864321111 1123344578899999999888877654 9999999999999998
Q ss_pred h------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 659 M------EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 659 ~------~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+ ++++||||||||+||...+..++++.++++++|..|++|.||++.+ ..++|++++|.+ |+++..|+++++.
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLA-A~YaDrivll~~-Grv~a~g~p~~vl 229 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLA-AQYADRIVLLHQ-GRVIASGSPQDVL 229 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHH-HHhhheeeeeeC-CeEeecCCHHHhc
Confidence 5 3458999999999999999999999999999999999999999976 589999999976 6899999999873
No 271
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.1e-37 Score=338.86 Aligned_cols=201 Identities=27% Similarity=0.439 Sum_probs=172.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||+++|+ ++.+|+++||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++| +..++|
T Consensus 4 ~l~~~~l~~~~~--~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~--------~~~i~~ 71 (251)
T PRK09544 4 LVSLENVSVSFG--QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNG--------KLRIGY 71 (251)
T ss_pred EEEEeceEEEEC--CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECC--------ccCEEE
Confidence 378999999994 4579999999999999999999999999999999999765 6889999987 246999
Q ss_pred EccCCCCCCC--CCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 581 VPQDDIVHGN--LTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 581 V~Qd~~l~~~--LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
++|++.+++. .|+.+++.+.. ... ...+.++++.+||.+..++.+.+ |||||||||+|||||+
T Consensus 72 v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~laral~ 136 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPMQK-----LSGGETQRVLLARALL 136 (251)
T ss_pred eccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCChhh-----CCHHHHHHHHHHHHHh
Confidence 9999887765 47888775421 111 12467889999999888877655 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+.+|++++|. + ++++.|+++++
T Consensus 137 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~-i~~~~d~i~~l~-~-~i~~~g~~~~~ 207 (251)
T PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL-VMAKTDEVLCLN-H-HICCSGTPEVV 207 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEC-C-ceEeeCCHHHH
Confidence 999999999999999999999999999998765 8999999999975 457899999995 4 47899998776
No 272
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1e-37 Score=333.05 Aligned_cols=209 Identities=24% Similarity=0.417 Sum_probs=168.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++|++++|+++.+.+|+|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|.++. ...+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhHhCCHHHHhhh
Confidence 378999999996544679999999999999999999999999999999999764 68899999998753 2345778
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccc-------cccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDS-------LVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~-------~vg~~~~rgLSGGQrQR 650 (1111)
++|++|++.+++ .||+||+.+... ... ..+.+.++.+++.+..++ ..+ ..+..||||||||
T Consensus 80 i~~~~q~~~l~~-~tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~~~~LS~G~~qr 147 (221)
T cd03244 80 ISIIPQDPVLFS-GTIRSNLDPFGE------YSD----EELWQALERVGLKEFVESLPGGLDTVVE-EGGENLSVGQRQL 147 (221)
T ss_pred EEEECCCCcccc-chHHHHhCcCCC------CCH----HHHHHHHHHhCcHHHHHhcccccccccc-cCCCcCCHHHHHH
Confidence 999999998775 599999975321 111 123445555555443321 111 1345699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
|+|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++. + ..+|++++|.+ |++++.|+
T Consensus 148 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~-g~~~~~~~ 220 (221)
T cd03244 148 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-I-IDSDRILVLDK-GRVVEFDS 220 (221)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-hhCCEEEEEEC-CeEEecCC
Confidence 9999999999999999999999999999999999999854 6899999999875 3 45999999986 57777765
No 273
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.4e-37 Score=376.04 Aligned_cols=215 Identities=22% Similarity=0.375 Sum_probs=178.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++|++++|+.+++.+|+|+|++|++|+.++|+||||||||||+++|+|++. |.+|+|++||+++. ...+++.
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD--VSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEHhhCCHHHHHhh
Confidence 588999999997555679999999999999999999999999999999999765 68999999998753 3457889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-------TVRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-------~~~d~~vg~~~~rgLSGGQrQR 650 (1111)
|+||+|++.+|+. |++|||.++... ...+ .++++++..++. +-.++.+++ ....||||||||
T Consensus 391 i~~v~q~~~lf~~-ti~~Ni~~~~~~-----~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qR 459 (569)
T PRK10789 391 LAVVSQTPFLFSD-TVANNIALGRPD-----ATQQ----EIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQR 459 (569)
T ss_pred eEEEccCCeeccc-cHHHHHhcCCCC-----CCHH----HHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHH
Confidence 9999999999864 999999886321 1111 233444444443 234556665 355799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
++|||||+++|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++. .+.+|++++|++ |+++..|+.++
T Consensus 460 i~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~~~ 535 (569)
T PRK10789 460 ISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQH-GHIAQRGNHDQ 535 (569)
T ss_pred HHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeC-CEEEEecCHHH
Confidence 999999999999999999999999999999999999875 68999999999864 478999999986 57899999887
Q ss_pred HH
Q 001270 731 VE 732 (1111)
Q Consensus 731 l~ 732 (1111)
+.
T Consensus 536 l~ 537 (569)
T PRK10789 536 LA 537 (569)
T ss_pred HH
Confidence 64
No 274
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.3e-37 Score=325.44 Aligned_cols=178 Identities=29% Similarity=0.479 Sum_probs=152.0
Q ss_pred cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-----ccccccEEEEccCCC--C
Q 001270 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-----HSYKKIIGFVPQDDI--V 587 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----~~~r~~IgyV~Qd~~--l 587 (1111)
++.+|+||||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|+++.. ..+++.++|++|++. +
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 4579999999999999999999999999999999999765 589999999987531 134668999999973 4
Q ss_pred CCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001270 588 HGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLD 667 (1111)
Q Consensus 588 ~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLD 667 (1111)
+ .+||+||+.+..... .....+..+.++++++.+||.+..++.+.+ |||||||||+|||||+.+|++||||
T Consensus 82 ~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 82 F-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred c-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4 579999999865322 122233344678899999998888887765 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 001270 668 EPTSGLDSASSQLLLRALRREALEGVNICLVVHQPS 703 (1111)
Q Consensus 668 EPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~ 703 (1111)
|||+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999999999878999999999975
No 275
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-37 Score=322.39 Aligned_cols=171 Identities=36% Similarity=0.559 Sum_probs=153.3
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-----ccccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-----HSYKK 576 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----~~~r~ 576 (1111)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|++. +++|+|.++|+++.. ..+++
T Consensus 1 i~~~~l~~~~~--~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (178)
T cd03229 1 LELKNVSKRYG--QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRR 76 (178)
T ss_pred CEEEEEEEEEC--CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhh
Confidence 46899999994 4679999999999999999999999999999999999765 589999999987532 24567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.++|++|++.+++.+|++||+.+. ||||||||++||||
T Consensus 77 ~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~a 114 (178)
T cd03229 77 RIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVALARA 114 (178)
T ss_pred cEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHHHHHH
Confidence 899999999988889999998642 89999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||+++. +.+.+|++++|++|
T Consensus 115 l~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~g 177 (178)
T cd03229 115 LAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE-AARLADRVVVLRDG 177 (178)
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEeCC
Confidence 99999999999999999999999999999999877 8999999999875 45689999999865
No 276
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.3e-37 Score=332.67 Aligned_cols=202 Identities=26% Similarity=0.360 Sum_probs=168.0
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 581 (1111)
+.++++++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|++... .
T Consensus 23 l~~~~~~~~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~ 89 (224)
T cd03220 23 LGILGRKGEV--GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------L 89 (224)
T ss_pred hhhhhhhhhc--CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------h
Confidence 6678888888 55789999999999999999999999999999999999765 689999999986421 1
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 001270 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEP 661 (1111)
Q Consensus 582 ~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P 661 (1111)
.+...+++.+||+||+.+...... ....+..+.++++++.+||.+..++.+++ |||||||||+|||+|+.+|
T Consensus 90 ~~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~laral~~~p 161 (224)
T cd03220 90 GLGGGFNPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPVKT-----YSSGMKARLAFAIATALEP 161 (224)
T ss_pred cccccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhcCC
Confidence 112344567899999988754321 12233344678889999998888887765 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 662 SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 662 ~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+.+|++++|.+ |++++.|
T Consensus 162 ~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 162 DILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-IKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999988778999999999875 4578999999986 5676654
No 277
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=3.5e-37 Score=325.61 Aligned_cols=190 Identities=27% Similarity=0.386 Sum_probs=160.0
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cc-cccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HS-YKKI 577 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~-~r~~ 577 (1111)
|+++||+++|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+....+.+|+|.++|+++.. .. .++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVG--GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeC--CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 46899999995 457999999999999999999999999999999999974223689999999987632 11 2446
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
++|++|++.+++.+|+++++. .. .+.|||||||||+|||+|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~----------------------------------~~-----~~~LS~G~~qrv~laral 119 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR----------------------------------YV-----NEGFSGGEKKRNEILQLL 119 (200)
T ss_pred EEEeecChhhccCccHHHHHh----------------------------------hc-----cccCCHHHHHHHHHHHHH
Confidence 999999999888888887760 01 124999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHH-hcCeEEEEeCCcEEEEecCHhhHHHHH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFR-MFDDLVLLAKGGLTVYHGSVKKVEEYF 735 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~-~~D~vilL~~GG~iv~~G~~~~l~~~f 735 (1111)
+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.+ .+|++++|.+ |++++.|+.+ +.+.+
T Consensus 120 ~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~-~~~~~~d~i~~l~~-G~i~~~~~~~-~~~~~ 195 (200)
T cd03217 120 LLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRL-LDYIKPDRVHVLYD-GRIVKSGDKE-LALEI 195 (200)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhhCCEEEEEEC-CEEEEEccHH-HHhhh
Confidence 99999999999999999999999999999998778999999999974 445 6999999986 5788888554 54444
No 278
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.7e-37 Score=338.45 Aligned_cols=219 Identities=23% Similarity=0.356 Sum_probs=172.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 577 (1111)
.|+++|++++|+...+.+|+||||+|++||+++|+|+||||||||+++|+|++. +.+|+|.++|+++.. ..+++.
T Consensus 19 ~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred eEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEhhhCCHHHHhhh
Confidence 588999999996433579999999999999999999999999999999999764 689999999987532 245778
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTL--GLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~L--GL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
|+||+|++.+++ .||+||+...... .............++++++.+ |++...+.. .+.||||||||++|||
T Consensus 97 i~~v~q~~~l~~-~tv~~nl~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~-----~~~LS~G~~qrl~lar 169 (257)
T cd03288 97 LSIILQDPILFS-GSIRFNLDPECKC-TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEG-----GENFSVGQRQLFCLAR 169 (257)
T ss_pred EEEECCCCcccc-cHHHHhcCcCCCC-CHHHHHHHHHHhCcHHHHhhcccccCcEeccC-----CCcCCHHHHHHHHHHH
Confidence 999999998886 5999998643110 000000111111234445544 555444433 3459999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||+++.. ..+|++++|.+ |++++.|+++++.
T Consensus 170 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~--~~~dri~~l~~-G~i~~~g~~~~~~ 242 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTI--LDADLVLVLSR-GILVECDTPENLL 242 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHH--HhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 9999999999999999999999999999999864 589999999999853 35999999986 5788999987764
No 279
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4.7e-37 Score=372.72 Aligned_cols=221 Identities=26% Similarity=0.364 Sum_probs=174.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||+++|++ .+.+|+|+||+|++||.++|+||||||||||+++|+|++. +.+|+|++||.+.. ...+++.
T Consensus 334 ~i~~~~v~~~y~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 410 (585)
T TIGR01192 334 AVEFRHITFEFAN-SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--PTVGQILIDGIDINTVTRESLRKS 410 (585)
T ss_pred eEEEEEEEEECCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--CCCCEEEECCEEhhhCCHHHHHhh
Confidence 5899999999963 3468999999999999999999999999999999999765 68999999998753 3457889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
++||+|++.+++ .|++|||.++........+....+...+++.+..+ .+..++.+++ ....||||||||++|||||
T Consensus 411 i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l--~~g~~t~~~~-~~~~LSgGq~qrl~lARal 486 (585)
T TIGR01192 411 IATVFQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKR--SNGYDTLVGE-RGNRLSGGERQRLAIARAI 486 (585)
T ss_pred eEEEccCCccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhc--cccccchhcC-CCCCCCHHHHHHHHHHHHH
Confidence 999999999885 69999998864211111111111111122223222 1223444554 3456999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++. .+.+|++++|++ |++++.|+.+++.
T Consensus 487 l~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~i~~l~~-G~i~~~g~~~~l~ 557 (585)
T TIGR01192 487 LKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADLVLFLDQ-GRLIEKGSFQELI 557 (585)
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCEEEEEEC-CEEEEECCHHHHH
Confidence 99999999999999999999999999998874 58999999999864 367999999987 5788999988764
No 280
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-38 Score=327.83 Aligned_cols=219 Identities=29% Similarity=0.453 Sum_probs=195.3
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccccE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 578 (1111)
|+++||+++| +++.+|++||++|++|.+++|+|||||||||||.+++.+.. .++|+|+++|.++. ...+.+++
T Consensus 2 I~i~nv~K~y--~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 2 ITIENVSKSY--GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred eeehhhhHhh--CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHH
Confidence 6789999999 67899999999999999999999999999999999999775 58999999999863 34577889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
+.+-|+..+...+||+|-+.|+...+..... ..+....+++.++.++|++..|++..+ ||||||||.-||+.|+
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRl-t~eD~~~I~~aieyl~L~~l~dryLd~-----LSGGQrQRAfIAMVla 151 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFPYSQGRL-TKEDRRIINEAIEYLHLEDLSDRYLDE-----LSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCcccCCCC-chHHHHHHHHHHHHhcccchHHHhHHh-----cccchhhhhhhheeee
Confidence 9999999988899999999998644332233 344456789999999999999999876 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
++.+.++||||.++||...+..+|+.|++++++ |+||++|.||..++- .++|+++-|.+ |+++..|+++++.
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS-~YsD~IVAlK~-G~vv~~G~~~eii 224 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFAS-CYSDHIVALKN-GKVVKQGSPDEII 224 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHH-hhhhheeeecC-CEEEecCCHHHhc
Confidence 999999999999999999999999999999976 999999999999864 79999999986 5899999999873
No 281
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.7e-37 Score=368.87 Aligned_cols=209 Identities=22% Similarity=0.251 Sum_probs=177.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 577 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||||+|+|+.. +++|+|.++|.+... ...++.
T Consensus 3 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~~~~~~~~~~~ 78 (490)
T PRK10938 3 SLQISQGTFRLS--DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHITRLSFEQLQKL 78 (490)
T ss_pred eEEEEeEEEEcC--CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccccCCHHHHHHH
Confidence 488999999994 4569999999999999999999999999999999999765 588999999976421 234567
Q ss_pred EEEEccCCCC--C------CCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 001270 578 IGFVPQDDIV--H------GNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 578 IgyV~Qd~~l--~------~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQ 649 (1111)
+||++|++.+ + ..+||+|++.+.. +..++++++++.+||.+..++.+++ |||||||
T Consensus 79 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~q 142 (490)
T PRK10938 79 VSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV-----------KDPARCEQLAQQFGITALLDRRFKY-----LSTGETR 142 (490)
T ss_pred hceeccCcchhhcccchhhccccHHHhcccch-----------hHHHHHHHHHHHcCCHhhhhCCccc-----CCHHHHH
Confidence 9999998643 1 1478888875421 1124578899999998888888776 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|+++
T Consensus 143 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~ 220 (490)
T PRK10938 143 KTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDE-IPDFVQFAGVLAD-CTLAETGERE 220 (490)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHhhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999999999999998889999999999875 5588999999987 5788999887
Q ss_pred hH
Q 001270 730 KV 731 (1111)
Q Consensus 730 ~l 731 (1111)
++
T Consensus 221 ~~ 222 (490)
T PRK10938 221 EI 222 (490)
T ss_pred HH
Confidence 65
No 282
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.8e-37 Score=369.52 Aligned_cols=221 Identities=25% Similarity=0.341 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEcC-CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----cccc
Q 001270 501 EVSFKDLTLTLKG-KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYK 575 (1111)
Q Consensus 501 ~L~~~nLs~~y~~-~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r 575 (1111)
.|+++|+++.|.+ +++.+|+||||+|++||+++|+|||||||||||++|+|+..+ +.+|+|.++|+++.. ..++
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHh
Confidence 4889999998842 235699999999999999999999999999999999997642 368999999987632 2345
Q ss_pred ccEEEEccCC---CCCCCCCHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHH
Q 001270 576 KIIGFVPQDD---IVHGNLTVEENLWFHARCRLSA--HLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 576 ~~IgyV~Qd~---~l~~~LTV~EnL~f~a~~~~~~--~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQ 649 (1111)
+.||||+|+. .+++.+||+||+.++....... ..........++++++.+||.+ ..++.+++ |||||||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGqkq 410 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGR-----LSGGNQQ 410 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcccc-----CCHHHHH
Confidence 7899999995 5888999999998854211100 1122233456789999999964 56777765 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
||+|||||+.+|+||||||||+|||+.++..+++.|++++++|.|||++|||++. +.+++|++++|.+| +++..++.+
T Consensus 411 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~-~~~~~d~v~~l~~G-~i~~~~~~~ 488 (500)
T TIGR02633 411 KAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAE-VLGLSDRVLVIGEG-KLKGDFVNH 488 (500)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEECC-EEEEEEccc
Confidence 9999999999999999999999999999999999999998889999999999975 56889999999874 677766544
No 283
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=4.2e-37 Score=371.83 Aligned_cols=215 Identities=27% Similarity=0.432 Sum_probs=178.3
Q ss_pred EEEEEeEEEEEcCCc-ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccc
Q 001270 501 EVSFKDLTLTLKGKN-KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~-k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 576 (1111)
.|+++||+++|+.+. +.+|+|+||+|++||.++|+|+||||||||+++|+|++. +.+|+|++||.+++ ...+++
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--PQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEHHhcCHHHHHH
Confidence 589999999996432 679999999999999999999999999999999999775 57899999998753 345788
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCCCHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV-------RDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-------~d~~vg~~~~rgLSGGQrQ 649 (1111)
.|+|+||++.+|+ .|++|||.++.+. .+. +.+.++++.+|+.+. .++.+++ ....|||||||
T Consensus 415 ~i~~~~Q~~~lf~-~Ti~~Ni~~~~~~-----~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Q 483 (576)
T TIGR02204 415 RMALVPQDPVLFA-ASVMENIRYGRPD-----ATD----EEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQ 483 (576)
T ss_pred hceEEccCCcccc-ccHHHHHhcCCCC-----CCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHH
Confidence 9999999999885 5999999885321 111 124455555555332 3455554 35679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
|++||||++++|++||||||||+||+.+++.+++.|+++. +++|+|++||+++. .+.+|++++|++ |+++..|+.+
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~--~~~~d~vi~l~~-g~~~~~g~~~ 559 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLAT--VLKADRIVVMDQ-GRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHH--HHhCCEEEEEEC-CEEEeeecHH
Confidence 9999999999999999999999999999999999999875 58999999999864 478999999987 4789999988
Q ss_pred hHH
Q 001270 730 KVE 732 (1111)
Q Consensus 730 ~l~ 732 (1111)
++.
T Consensus 560 ~l~ 562 (576)
T TIGR02204 560 ELI 562 (576)
T ss_pred HHH
Confidence 763
No 284
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.9e-37 Score=318.91 Aligned_cols=168 Identities=29% Similarity=0.538 Sum_probs=150.3
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccccE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 578 (1111)
|+++|++++|++..+.+++++||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++. ...+++.+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i 78 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQWDPNELGDHV 78 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEcccCCHHHHHhhe
Confidence 46899999996434569999999999999999999999999999999999765 57899999998753 22456789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
+|++|++.+++ .||+||+ ||||||||++|||||+
T Consensus 79 ~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~qrv~la~al~ 112 (173)
T cd03246 79 GYLPQDDELFS-GSIAENI---------------------------------------------LSGGQRQRLGLARALY 112 (173)
T ss_pred EEECCCCcccc-CcHHHHC---------------------------------------------cCHHHHHHHHHHHHHh
Confidence 99999998887 4999987 7999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. + +.+|++++|.+|
T Consensus 113 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~-~~~d~v~~l~~G 171 (173)
T cd03246 113 GNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET-L-ASADRILVLEDG 171 (173)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEEECC
Confidence 9999999999999999999999999999998779999999999874 3 689999999865
No 285
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-37 Score=369.29 Aligned_cols=215 Identities=20% Similarity=0.331 Sum_probs=178.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 576 (1111)
.|+++||++.| + .+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ...++
T Consensus 265 ~l~~~~l~~~~--~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 265 VFEVRNVTSRD--R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred EEEEeCccccC--C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHC
Confidence 48899999865 2 38999999999999999999999999999999999765 588999999987532 12356
Q ss_pred cEEEEccC---CCCCCCCCHHHHHHHHHHhh---ccc--c-chHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHH
Q 001270 577 IIGFVPQD---DIVHGNLTVEENLWFHARCR---LSA--H-LAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGG 646 (1111)
Q Consensus 577 ~IgyV~Qd---~~l~~~LTV~EnL~f~a~~~---~~~--~-~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGG 646 (1111)
.||||+|+ ..+++.+||+||+.+....+ ... . .........++++++.+||. +..++.+++ ||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG 413 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITE-----LSGG 413 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcccc-----CChH
Confidence 79999998 46888999999998753211 000 0 11122234578899999996 677888776 9999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 647 QRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 647 QrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
|||||+|||+|+.+|+||||||||+|||+.++..++++|++++++|.|||++|||++. +.+.+|++++|.+| ++++.+
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~-~~~~~d~i~~l~~G-~i~~~~ 491 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE-IITVCDRIAVFCEG-RLTQIL 491 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHhhCCEEEEEECC-EEEEEe
Confidence 9999999999999999999999999999999999999999998889999999999875 45899999999875 677777
Q ss_pred CH
Q 001270 727 SV 728 (1111)
Q Consensus 727 ~~ 728 (1111)
+.
T Consensus 492 ~~ 493 (510)
T PRK09700 492 TN 493 (510)
T ss_pred cC
Confidence 54
No 286
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-38 Score=353.19 Aligned_cols=264 Identities=25% Similarity=0.364 Sum_probs=211.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhcccccccccccccccccccCCCceEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEE
Q 001270 453 LSTHSQIFNYAYAQLEKEKALQQENKNLTFSGVVSMATNTEVRKRPLIEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRIT 532 (1111)
Q Consensus 453 l~~~~~~~~~a~~~l~~~~~~~~e~~~l~~~~~~s~~~~~~~~~~~~i~L~~~nLs~~y~~~~k~IL~~VS~~I~~Geiv 532 (1111)
++|.|...+...-++|+..++..|.... +..+...+. +.+.-.|+|+||+|.|. .++++|+||||+++||+.+
T Consensus 495 FGT~YR~iQ~nfiDmEnmfdllkee~eV-----vd~P~a~pl-~~~~G~i~fsnvtF~Y~-p~k~vl~disF~v~pGktv 567 (790)
T KOG0056|consen 495 FGTYYRSIQKNFIDMENMFDLLKEEPEV-----VDLPGAPPL-KVTQGKIEFSNVTFAYD-PGKPVLSDISFTVQPGKTV 567 (790)
T ss_pred HHHHHHHHHHhhhhHHHHHHHhhcCchh-----hcCCCCCCc-cccCCeEEEEEeEEecC-CCCceeecceEEecCCcEE
Confidence 4677777777777788877776664321 111111111 22345799999999996 4678999999999999999
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccc
Q 001270 533 AVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHL 609 (1111)
Q Consensus 533 aIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~ 609 (1111)
||+||||+||||++++|..+.. ..+|.|.|||+++. ..++|+.||.||||..+|. -|+..||.|+.....++.+
T Consensus 568 AlVG~SGaGKSTimRlLfRffd--v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak~~Asneev 644 (790)
T KOG0056|consen 568 ALVGPSGAGKSTIMRLLFRFFD--VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAKPSASNEEV 644 (790)
T ss_pred EEECCCCCchhHHHHHHHHHhh--ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecCCCCChHHH
Confidence 9999999999999999999654 57899999999863 4578999999999999985 4999999998665544444
Q ss_pred hHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001270 610 AKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREA 689 (1111)
Q Consensus 610 ~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la 689 (1111)
..+.+.+.+++- .+++.+-.++.+|+.+. .|||||||||+|||+++++|.+++|||.||+||..+++.|...|.++.
T Consensus 645 yaAAkAA~IHdr--Il~fPegY~t~VGERGL-kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc 721 (790)
T KOG0056|consen 645 YAAAKAAQIHDR--ILQFPEGYNTRVGERGL-KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC 721 (790)
T ss_pred HHHHHHhhHHHH--HhcCchhhhhhhhhccc-ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh
Confidence 444444444443 35777788899998433 389999999999999999999999999999999999999999999987
Q ss_pred hCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 690 LEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 690 ~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
. ++|.|++.|+++.. -.+|.|+++.+ |+|++.|..+|+..
T Consensus 722 a-~RTtIVvAHRLSTi--vnAD~ILvi~~-G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 722 A-NRTTIVVAHRLSTI--VNADLILVISN-GRIVERGRHEELLK 761 (790)
T ss_pred c-CCceEEEeeeehhe--ecccEEEEEeC-CeEeecCcHHHHHh
Confidence 4 78999999999853 57999999987 58999999988763
No 287
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-37 Score=358.48 Aligned_cols=216 Identities=27% Similarity=0.423 Sum_probs=189.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 576 (1111)
-++++|++++| +..++|+||||++.+||++||+|.||||||||+|+|+|.+. |++|+|.++|++... .....
T Consensus 8 ll~~~~i~K~F--ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 8 LLELRGISKSF--GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred eeeeecceEEc--CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHhC
Confidence 47899999999 55689999999999999999999999999999999999765 789999999998642 23456
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
.|+.|+|+..+.|+|||.|||.++...... .-+......+++.++|+.+|+....++.+++ ||+||||.|+|||
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIAr 158 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEIAR 158 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHHHH
Confidence 799999999999999999999988654331 2244455566788999999996447888877 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
||..+++|||||||||+|+......+++.+++++++|.+||+|||.++ ++++.+|++.+|.+| +.+..++
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG-~~v~~~~ 228 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG-RVVGTRP 228 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCC-EEeeecc
Confidence 999999999999999999999999999999999999999999999997 478999999999875 6777666
No 288
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=331.80 Aligned_cols=212 Identities=20% Similarity=0.283 Sum_probs=177.3
Q ss_pred eEEEEEeEEEEEcC------------------CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeE
Q 001270 500 IEVSFKDLTLTLKG------------------KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGL 561 (1111)
Q Consensus 500 i~L~~~nLs~~y~~------------------~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~ 561 (1111)
+.|+++||++.|.. ..+.+|++|||+|++||+++|+||||||||||+++|+|++. +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 45778888887753 23469999999999999999999999999999999999765 57899
Q ss_pred EEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCC
Q 001270 562 ILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKR 641 (1111)
Q Consensus 562 I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~r 641 (1111)
|.++|. +++++|+..+.+.+||.||+.+..... .....+....++++++.++|.+..++.+++
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 143 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVKK---- 143 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCccc----
Confidence 999985 456778777778899999998764322 122233334567788889998887776655
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcE
Q 001270 642 GISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGL 721 (1111)
Q Consensus 642 gLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~ 721 (1111)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|.+++++|+|||++||++.. +.+.+|++++|.+ |+
T Consensus 144 -LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~-i~~~~d~i~~l~~-G~ 220 (264)
T PRK13546 144 -YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQ-VRQFCTKIAWIEG-GK 220 (264)
T ss_pred -CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHHHcCEEEEEEC-CE
Confidence 99999999999999999999999999999999999999999999988789999999999874 4578999999986 57
Q ss_pred EEEecCHhhHHH
Q 001270 722 TVYHGSVKKVEE 733 (1111)
Q Consensus 722 iv~~G~~~~l~~ 733 (1111)
+++.|+.+++.+
T Consensus 221 i~~~g~~~~~~~ 232 (264)
T PRK13546 221 LKDYGELDDVLP 232 (264)
T ss_pred EEEeCCHHHHHH
Confidence 889999887654
No 289
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.8e-37 Score=319.16 Aligned_cols=170 Identities=28% Similarity=0.455 Sum_probs=151.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 576 (1111)
.|+++|++++| +|+++||+|++||+++|+||||||||||+++|+|++. +++|+|.++|+++.. ...++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 75 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRA 75 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhC
Confidence 37889999987 8999999999999999999999999999999999765 688999999987632 13467
Q ss_pred cEEEEccCC---CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 001270 577 IIGFVPQDD---IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 577 ~IgyV~Qd~---~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaI 653 (1111)
.++|++|++ .+++.+|++||+.+... |||||||||+|
T Consensus 76 ~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~qrl~l 115 (182)
T cd03215 76 GIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQKVVL 115 (182)
T ss_pred CeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHHHHHH
Confidence 899999985 57788999999976421 89999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||+++. +.+.+|++++|.+|
T Consensus 116 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-~~~~~d~v~~l~~G 180 (182)
T cd03215 116 ARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDE-LLGLCDRILVMYEG 180 (182)
T ss_pred HHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEecCC
Confidence 999999999999999999999999999999999987778999999999864 56789999999875
No 290
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.2e-37 Score=369.63 Aligned_cols=188 Identities=27% Similarity=0.462 Sum_probs=157.7
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC--ccccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP--IHSYKKI 577 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~--~~~~r~~ 577 (1111)
..|+++||+|+|+++ +.+|+|+||+|++||.+||+||||||||||+|+|+|++. |++|+|++||.++. ...+|+.
T Consensus 333 ~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~i~~~~~~lr~~ 409 (529)
T TIGR02868 333 PTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVSVSSLQDELRRR 409 (529)
T ss_pred ceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhHHHHHHhh
Confidence 369999999999643 469999999999999999999999999999999999765 68999999998753 4567889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-------TVRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-------~~~d~~vg~~~~rgLSGGQrQR 650 (1111)
||||||++.+|+. |++|||.++.+. .++ +.++++++..|++ +-.|+.+|+ .+..||||||||
T Consensus 410 i~~V~Q~~~lF~~-TI~eNI~~g~~~-----~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQR 478 (529)
T TIGR02868 410 ISVFAQDAHLFDT-TVRDNLRLGRPD-----ATD----EELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQR 478 (529)
T ss_pred eEEEccCcccccc-cHHHHHhccCCC-----CCH----HHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHH
Confidence 9999999999965 999999986421 111 1244555555543 334777776 445699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQP 702 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~ 702 (1111)
++|||||+++|+|||||||||+||+.++..|.+.|+++ .+++|+|+|+|++
T Consensus 479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 99999999999999999999999999999999999875 3589999999984
No 291
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=5e-37 Score=318.35 Aligned_cols=176 Identities=24% Similarity=0.465 Sum_probs=152.8
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 579 (1111)
|+++|++++|++..+.+|+|+||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++.. ..+++.++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVSDLEKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHHHHHHHHHhhEE
Confidence 46899999996433469999999999999999999999999999999999765 578999999986531 23567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|++|++.+++ .||+||+ + ..||||||||++|||||+.
T Consensus 79 ~~~q~~~~~~-~tv~~~i-------------------------------------~-----~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 79 VLNQRPYLFD-TTLRNNL-------------------------------------G-----RRFSGGERQRLALARILLQ 115 (178)
T ss_pred EEccCCeeec-ccHHHhh-------------------------------------c-----ccCCHHHHHHHHHHHHHhc
Confidence 9999998875 6999987 2 2499999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
+|++|||||||+|||+.++..+++.|+++. ++.|||++||+++. + ..+|++++|.+ |++++.|
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~-g~i~~~~ 178 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLEN-GKIIMQG 178 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999985 58999999999975 3 56999999986 5666654
No 292
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5.4e-37 Score=367.65 Aligned_cols=200 Identities=34% Similarity=0.528 Sum_probs=167.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||+|+|+++++++|+|+|++|++||.++|+||||||||||+|+|+|++. +.+|+|.+||.++. ...+++.
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEehhhCCHHHHHhh
Confidence 689999999997555679999999999999999999999999999999999775 68899999999753 3567889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-------VRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-------~~d~~vg~~~~rgLSGGQrQR 650 (1111)
||||+|++.+|+ .|++|||.++... ..+ +.++++++..|+.+ -.|+.+|+ ....||||||||
T Consensus 398 i~~v~Q~~~lf~-~ti~~Ni~~~~~~-----~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qr 466 (529)
T TIGR02857 398 IAWVPQHPFLFA-GTIAENIRLARPD-----ASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQR 466 (529)
T ss_pred eEEEcCCCcccC-cCHHHHHhccCCC-----CCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHH
Confidence 999999999986 5999999886421 111 12345555555543 24566665 455799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEE
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLL 716 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL 716 (1111)
++|||||+++|++||||||||+||+.++..+.+.|+++. +++|+|++||+++. .+.+|++++|
T Consensus 467 i~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l 529 (529)
T TIGR02857 467 LALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL--AERADRIVVL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH--HHhCCEEEeC
Confidence 999999999999999999999999999999999999875 58999999999864 4789999875
No 293
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.2e-36 Score=322.36 Aligned_cols=198 Identities=22% Similarity=0.343 Sum_probs=162.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++|++++|+...+.+|+|+||+|++||+++|+|+||||||||+++|+|+.. +.+|+|.++|+++. ....++.
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEhHHCCHHHHHhh
Confidence 478999999996433579999999999999999999999999999999999765 58899999998752 2235678
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
|+||+|++.+++ .||+||+.+... .... .+.+.++ + ++. +..|||||+|||+|||+|
T Consensus 84 i~~v~q~~~~~~-~tv~~~l~~~~~------~~~~----~~~~~l~---~----~~~-----~~~LS~G~~qrv~laral 140 (207)
T cd03369 84 LTIIPQDPTLFS-GTIRSNLDPFDE------YSDE----EIYGALR---V----SEG-----GLNLSQGQRQLLCLARAL 140 (207)
T ss_pred EEEEecCCcccC-ccHHHHhcccCC------CCHH----HHHHHhh---c----cCC-----CCcCCHHHHHHHHHHHHH
Confidence 999999998886 599999975321 1111 1233333 2 233 345999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
+.+|++|||||||+|||+.++..+++.|+++. +|.|+|++||+++.. ..+|++++|.+| +++.+|+
T Consensus 141 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~--~~~d~v~~l~~g-~i~~~g~ 206 (207)
T cd03369 141 LKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTI--IDYDKILVMDAG-EVKEYDH 206 (207)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHH--hhCCEEEEEECC-EEEecCC
Confidence 99999999999999999999999999999985 589999999998753 348999999874 6777775
No 294
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.5e-37 Score=322.76 Aligned_cols=197 Identities=27% Similarity=0.430 Sum_probs=151.9
Q ss_pred EEEEeEEEEEcCCc---ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccE
Q 001270 502 VSFKDLTLTLKGKN---KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~---k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 578 (1111)
|+++||+++|+++. +.+|+|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++| .|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g----------~i 68 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG----------SI 68 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC----------EE
Confidence 46899999996432 369999999999999999999999999999999999765 6899999998 59
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTL--GLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~L--GL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
+|++|++.++ .+||+||+.+..... ........+...+.+.++.+ |++...+.. .+.||||||||++|||+
T Consensus 69 ~~~~q~~~l~-~~t~~enl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~lS~G~~qrv~lara 141 (204)
T cd03250 69 AYVSQEPWIQ-NGTIRENILFGKPFD-EERYEKVIKACALEPDLEILPDGDLTEIGEK-----GINLSGGQKQRISLARA 141 (204)
T ss_pred EEEecCchhc-cCcHHHHhccCCCcC-HHHHHHHHHHcCcHHHHHhccCcccceecCC-----CCcCCHHHHHHHHHHHH
Confidence 9999999888 569999998853211 00000000000111222222 233333333 34699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLR-ALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~-~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
|+.+|+++||||||+|||+.++..+++ +++++.++|+|||++||+++.. .. +|++++|.+|
T Consensus 142 l~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~-~~-~d~i~~l~~G 203 (204)
T cd03250 142 VYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLL-PH-ADQIVVLDNG 203 (204)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHH-hh-CCEEEEEeCC
Confidence 999999999999999999999999998 4666666689999999998753 34 9999999865
No 295
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=362.37 Aligned_cols=215 Identities=22% Similarity=0.376 Sum_probs=179.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 576 (1111)
.|+++||++ .+|+|+||+|.+||+++|+|||||||||||++|+|+.. +++|+|.++|+++.. ...++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~ 327 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLAN 327 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHC
Confidence 478899874 36999999999999999999999999999999999765 578999999987532 12456
Q ss_pred cEEEEccCC---CCCCCCCHHHHHHHHHHhhccc---cchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHH
Q 001270 577 IIGFVPQDD---IVHGNLTVEENLWFHARCRLSA---HLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 577 ~IgyV~Qd~---~l~~~LTV~EnL~f~a~~~~~~---~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQ 649 (1111)
.||||+|++ .+++.+||.||+.+........ .....+..+.++++++.+||. +..++.+++ |||||||
T Consensus 328 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGekq 402 (501)
T PRK10762 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGL-----LSGGNQQ 402 (501)
T ss_pred CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhh-----CCHHHHH
Confidence 799999996 5778899999998753211100 012223345688999999995 667887766 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++|||++. +.+.+|++++|.+ |++++.|+++
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~-~~~~~d~v~~l~~-G~i~~~~~~~ 480 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPE-VLGMSDRILVMHE-GRISGEFTRE 480 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHhhCCEEEEEEC-CEEEEEeccc
Confidence 9999999999999999999999999999999999999998889999999999975 5689999999986 5788888876
Q ss_pred hH
Q 001270 730 KV 731 (1111)
Q Consensus 730 ~l 731 (1111)
++
T Consensus 481 ~~ 482 (501)
T PRK10762 481 QA 482 (501)
T ss_pred cC
Confidence 54
No 296
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-37 Score=330.95 Aligned_cols=195 Identities=31% Similarity=0.461 Sum_probs=172.9
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC-------CcccccccEEEEccCCCCCCCCC
Q 001270 520 RCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE-------PIHSYKKIIGFVPQDDIVHGNLT 592 (1111)
Q Consensus 520 ~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~-------~~~~~r~~IgyV~Qd~~l~~~LT 592 (1111)
=+++|..+.-.++||.|+||||||||+|+|+|+.. |++|.|.+||+.+ .....+|+|||||||..+||++|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 37888887767999999999999999999999876 6899999999753 12245789999999999999999
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001270 593 VEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672 (1111)
Q Consensus 593 V~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSG 672 (1111)
|+.||.|+.... .....+++++.||+++..++++.+ |||||||||+|+|||+++|++|+||||.++
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~~-----LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCCc-----cCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999986421 123467899999999999999876 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 673 LDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 673 LD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||...+.+++-.|.+++++ +.-|++|||.+.+ +.+++|++++|++ |++...|+.+++.
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~~E-v~RLAd~vV~le~-GkV~A~g~~e~v~ 217 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSLDE-VLRLADRVVVLEN-GKVKASGPLEEVW 217 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCHHH-HHhhhheEEEecC-CeEEecCcHHHHh
Confidence 9999999999999999876 8899999999975 6799999999987 5899999998874
No 297
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.2e-36 Score=316.20 Aligned_cols=175 Identities=37% Similarity=0.591 Sum_probs=150.0
Q ss_pred EEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccccEE
Q 001270 503 SFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKIIG 579 (1111)
Q Consensus 503 ~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~Ig 579 (1111)
+++||+++|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++.. ..+++.++
T Consensus 1 ~~~~l~~~~~--~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~i~ 76 (180)
T cd03214 1 EVENLSVGYG--GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASLSPKELARKIA 76 (180)
T ss_pred CeeEEEEEEC--CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcCCHHHHHHHHh
Confidence 4689999994 3579999999999999999999999999999999999765 689999999987532 23455688
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|++| +++.+||.+..++.+. .||||||||++|||||+.
T Consensus 77 ~~~q-------------------------------------~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~ 114 (180)
T cd03214 77 YVPQ-------------------------------------ALELLGLAHLADRPFN-----ELSGGERQRVLLARALAQ 114 (180)
T ss_pred HHHH-------------------------------------HHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhc
Confidence 8888 4566777766666554 499999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEe
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYH 725 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~ 725 (1111)
+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.+++|++++|.+| ++++.
T Consensus 115 ~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~-~~~~~d~~~~l~~g-~i~~~ 179 (180)
T cd03214 115 EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL-AARYADRVILLKDG-RIVAQ 179 (180)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECC-EEEec
Confidence 99999999999999999999999999998776 8999999999875 45789999999874 66654
No 298
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=349.66 Aligned_cols=213 Identities=22% Similarity=0.305 Sum_probs=177.3
Q ss_pred EEEEEeEEEEEcCCc-ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 501 EVSFKDLTLTLKGKN-KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~-k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
.++++||++.|.++. +.+|+||||+|++|++++|+|||||||||||++|+|+.. +.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~---------- 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA---------- 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee----------
Confidence 478999999986432 469999999999999999999999999999999999765 5889999999641
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
++.+...+.+.+||+||+.+..... .....+..+.++++++.+||.+..++.+++ |||||||||+|||||+.
T Consensus 89 ~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~~-----LSGGQrQRVaLArAL~~ 160 (549)
T PRK13545 89 LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVKT-----YSSGMKSRLGFAISVHI 160 (549)
T ss_pred eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCccc-----CCHHHHHHHHHHHHHHh
Confidence 1222345667789999998754322 122233334577899999998888887765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYF 735 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f 735 (1111)
+|++|||||||+|||+.++..+++.|++++++|.|||++||+++. +.+.+|++++|.+ |++++.|+++++...+
T Consensus 161 ~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~-i~~l~DrIivL~~-GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 161 NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ-VKSFCTKALWLHY-GQVKEYGDIKEVVDHY 234 (549)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEECCHHHHHhhH
Confidence 999999999999999999999999999988779999999999874 5678999999986 5788999998875433
No 299
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.8e-36 Score=397.38 Aligned_cols=214 Identities=21% Similarity=0.339 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||+++|..+.+.+|+||||+|++||.+||+|+||||||||+++|.|++. +.+|+|.+||.++. .+.+|++
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEhhhCCHHHHHhh
Confidence 689999999996555679999999999999999999999999999999999765 68999999999863 4578999
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-------VRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-------~~d~~vg~~~~rgLSGGQrQR 650 (1111)
|+|||||+.+|+. |++|||.++.. .+++ .+.++++..++.+ -.|+.+++ .+..||||||||
T Consensus 1312 i~iVpQdp~LF~g-TIr~NL~~~~~------~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQr 1379 (1495)
T PLN03232 1312 LSIIPQSPVLFSG-TVRFNIDPFSE------HNDA----DLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQL 1379 (1495)
T ss_pred cEEECCCCeeeCc-cHHHHcCCCCC------CCHH----HHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHH
Confidence 9999999999965 99999976421 1221 2444555554432 34666665 445799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|||+|+|+++. ...+|+|++|++ |++++.|++++
T Consensus 1380 laLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVL~~-G~ivE~Gt~~e 1455 (1495)
T PLN03232 1380 LSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDKILVLSS-GQVLEYDSPQE 1455 (1495)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEEEC-CEEEEECCHHH
Confidence 999999999999999999999999999999999999864 58999999999864 467999999986 58999999998
Q ss_pred HH
Q 001270 731 VE 732 (1111)
Q Consensus 731 l~ 732 (1111)
+.
T Consensus 1456 Ll 1457 (1495)
T PLN03232 1456 LL 1457 (1495)
T ss_pred HH
Confidence 75
No 300
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.9e-36 Score=315.28 Aligned_cols=190 Identities=23% Similarity=0.276 Sum_probs=159.7
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 581 (1111)
|+++|++++|+ ++.+++ +||+|++||+++|+|+||||||||+++|+|+.. +.+|+|.++|.++... .++.++|+
T Consensus 2 l~~~~l~~~~~--~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~-~~~~~~~~ 75 (195)
T PRK13541 2 LSLHQLQFNIE--QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNINNI-AKPYCTYI 75 (195)
T ss_pred eEEEEeeEEEC--CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccChh-hhhhEEec
Confidence 67899999994 345555 999999999999999999999999999999765 6899999999875322 14569999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 001270 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEP 661 (1111)
Q Consensus 582 ~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P 661 (1111)
+|++.+++.+||+||+.+..... . ..+.++++++.+|+.+..++.+.+ ||||||||++|||||+.+|
T Consensus 76 ~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 76 GHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKCYS-----LSSGMQKIVAIARLIACQS 142 (195)
T ss_pred cCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccChhh-----CCHHHHHHHHHHHHHhcCC
Confidence 99988888899999998865321 1 123467888999998777776655 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCe
Q 001270 662 SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDD 712 (1111)
Q Consensus 662 ~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~ 712 (1111)
++|||||||+|||+.++..+.+.|++..++|.|||++||+++.. +.+|-
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i--~~~~~ 191 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSI--KSAQI 191 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcccc--chhhe
Confidence 99999999999999999999999987777799999999998742 44553
No 301
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=360.96 Aligned_cols=216 Identities=22% Similarity=0.358 Sum_probs=179.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 576 (1111)
.++++|+++. .+|+|+||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++.. ...++
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~ 328 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRA 328 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhC
Confidence 5788998731 48999999999999999999999999999999999764 688999999987532 12356
Q ss_pred cEEEEccCC---CCCCCCCHHHHHHHHHHhhc-ccc--chHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHH
Q 001270 577 IIGFVPQDD---IVHGNLTVEENLWFHARCRL-SAH--LAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 577 ~IgyV~Qd~---~l~~~LTV~EnL~f~a~~~~-~~~--~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQ 649 (1111)
.++|++|++ .+++.+||.||+.++..... ... .......+.++++++.+|+. +..++.+++ |||||||
T Consensus 329 ~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~q 403 (501)
T PRK11288 329 GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMN-----LSGGNQQ 403 (501)
T ss_pred CCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcccc-----CCHHHHH
Confidence 799999996 48888999999987532110 000 01222234578899999994 677888876 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
||+|||+|+.+|+||||||||+|||+.++..++++|++++++|.|||++|||++. +.+++|++++|.+ |++++.|+++
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~-~~~~~d~i~~l~~-g~i~~~~~~~ 481 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPE-VLGVADRIVVMRE-GRIAGELARE 481 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHhhCCEEEEEEC-CEEEEEEccc
Confidence 9999999999999999999999999999999999999998889999999999975 5689999999986 4788888876
Q ss_pred hH
Q 001270 730 KV 731 (1111)
Q Consensus 730 ~l 731 (1111)
++
T Consensus 482 ~~ 483 (501)
T PRK11288 482 QA 483 (501)
T ss_pred cC
Confidence 53
No 302
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.2e-36 Score=323.38 Aligned_cols=196 Identities=29% Similarity=0.449 Sum_probs=162.8
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCC--CCCHHHHHHHHH
Q 001270 524 GKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHG--NLTVEENLWFHA 601 (1111)
Q Consensus 524 ~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~--~LTV~EnL~f~a 601 (1111)
|+|++||+++|+|+||||||||+++|+|+.. +.+|+|.++|++.. ..++.++|++|++.++. .+||.||+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4689999999999999999999999999765 58899999998643 34578999999987643 479999998753
Q ss_pred Hhhcc-ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 001270 602 RCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQL 680 (1111)
Q Consensus 602 ~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~ 680 (1111)
..... ...........+.++++.+|+.+..++.+++ |||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 0011112234578899999998887777765 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 681 LLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 681 Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+.+.|++++++|+|||++||+++. +.+.+|+++++ + |++++.|+.+++
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~~-~~~~~d~i~~l-~-G~i~~~~~~~~~ 199 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLAQ-AMATCDRVVLL-N-GRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEE-C-CEEEeecCHHHh
Confidence 999999988779999999999874 56889999998 6 688899998776
No 303
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.3e-36 Score=398.94 Aligned_cols=215 Identities=23% Similarity=0.363 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+|+||+++|..+.+.+|+||||+|++||.+||+|+||||||||+++|.|++. +.+|+|+|||.++. ...+|++
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEecccCCHHHHHhc
Confidence 699999999996544579999999999999999999999999999999999775 68899999999863 4578999
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-------TVRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-------~~~d~~vg~~~~rgLSGGQrQR 650 (1111)
|++||||+.+|.. |++|||.++.. .+++ .+.++++..++. .-.|+.+++ .+..||||||||
T Consensus 1315 IsiVpQdp~LF~G-TIreNLd~~~~------~tde----ei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQr 1382 (1622)
T PLN03130 1315 LGIIPQAPVLFSG-TVRFNLDPFNE------HNDA----DLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQL 1382 (1622)
T ss_pred cEEECCCCccccc-cHHHHhCcCCC------CCHH----HHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHH
Confidence 9999999999965 99999976431 1111 233444444432 335667775 455799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|||+|+|+++. ...+|+|++|++ |++++.|++++
T Consensus 1383 laLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVLd~-G~IvE~Gt~~e 1458 (1622)
T PLN03130 1383 LSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVLDA-GRVVEFDTPEN 1458 (1622)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEEEC-CEEEEeCCHHH
Confidence 999999999999999999999999999999999999864 58999999999874 367999999987 58999999999
Q ss_pred HHH
Q 001270 731 VEE 733 (1111)
Q Consensus 731 l~~ 733 (1111)
+.+
T Consensus 1459 Ll~ 1461 (1622)
T PLN03130 1459 LLS 1461 (1622)
T ss_pred HHh
Confidence 853
No 304
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.3e-36 Score=319.83 Aligned_cols=200 Identities=27% Similarity=0.372 Sum_probs=157.7
Q ss_pred EEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-------cccc
Q 001270 503 SFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-------HSYK 575 (1111)
Q Consensus 503 ~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~r 575 (1111)
.+.|+++.|+.+ +.+|+|+||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|++... ...+
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATRSRNR 78 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccccchhhc
Confidence 467899999643 579999999999999999999999999999999999765 578999999986421 1235
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccc-------cccCccCCCCCHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDS-------LVGTVEKRGISGGQR 648 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~-------~vg~~~~rgLSGGQr 648 (1111)
+.++|++|++.++ ..|++||+.+.... ... ...++++.++|.+..+. ... ..+..||||||
T Consensus 79 ~~i~~~~q~~~~~-~~t~~~nl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~ 146 (218)
T cd03290 79 YSVAYAAQKPWLL-NATVEENITFGSPF------NKQ----RYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQR 146 (218)
T ss_pred ceEEEEcCCCccc-cccHHHHHhhcCcC------CHH----HHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHH
Confidence 6799999999887 57999999875321 111 12344555555432211 111 12346999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLR--ALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~--~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
|||+|||+|+.+|++|||||||+|||+.++..+++ +++.+.++|.|||++||+++. + ..+|++++|.+|
T Consensus 147 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G 217 (218)
T cd03290 147 QRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDG 217 (218)
T ss_pred HHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCC
Confidence 99999999999999999999999999999999998 666666668999999999975 3 579999999764
No 305
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-36 Score=309.72 Aligned_cols=167 Identities=37% Similarity=0.643 Sum_probs=147.1
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccccE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 578 (1111)
|+++|++++|+++.+.+|+|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++. ...+++.+
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i 78 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLESLRKNI 78 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhhcCHHHHHhhE
Confidence 46889999995432379999999999999999999999999999999999765 57899999998753 22356789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
+|++|++.+++ .||.||+ |||||||||+|||+|+
T Consensus 79 ~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~la~al~ 112 (171)
T cd03228 79 AYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIAIARALL 112 (171)
T ss_pred EEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHHHHHHHh
Confidence 99999998775 5998887 7999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
.+|++|||||||+|||+.++..+.+.|+++. +++|||++||+++. +.. +|++++|.+|
T Consensus 113 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~~~-~d~~~~l~~g 170 (171)
T cd03228 113 RDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLST-IRD-ADRIIVLDDG 170 (171)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-HHh-CCEEEEEcCC
Confidence 9999999999999999999999999999985 47999999999975 444 9999999765
No 306
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.8e-36 Score=344.33 Aligned_cols=216 Identities=26% Similarity=0.363 Sum_probs=190.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 576 (1111)
.|+++++++.|+ ...+++||||+|++||++||+|.||||||||+++|.|++. |++|+|+++|+++.. ...+.
T Consensus 4 ~l~~~~itK~f~--~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 4 ALEMRGITKRFP--GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred eEEEeccEEEcC--CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEeccCCHHHHHHc
Confidence 478999999995 6789999999999999999999999999999999999775 799999999998643 24677
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.||+|+|++.|++++||.|||.++...............++++++.+++||.=..|.++++ ||-||||||.|-++
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIlKa 154 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEILKA 154 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHHHHH
Confidence 8999999999999999999999987532222334555567789999999998888888887 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
|.++|++|||||||+-|-|....++++.|++++++|+|||+|||.+.+ +.+.+|++-+|.+| +++..-+
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~E-v~~iaDrvTVLR~G-kvvgt~~ 223 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKE-VMAIADRVTVLRRG-KVVGTVD 223 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH-HHHhhCeeEEEeCC-eEEeeec
Confidence 999999999999999999999999999999999999999999999985 56899999999875 5654433
No 307
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=7.8e-36 Score=306.89 Aligned_cols=165 Identities=29% Similarity=0.464 Sum_probs=145.6
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 581 (1111)
|+++|++++|++ .+.+|+|+||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|. +.++|+
T Consensus 1 i~~~~~~~~~~~-~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~--------~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPD-GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG--------EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCC-CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC--------ceEEEE
Confidence 468999999953 3579999999999999999999999999999999999765 57899999873 579999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 001270 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEP 661 (1111)
Q Consensus 582 ~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P 661 (1111)
+|++.++ .+||+||+.+. .+ +.||||||||++|||||+.+|
T Consensus 70 ~q~~~~~-~~tv~~nl~~~---------------------------------~~-----~~LS~G~~~rv~laral~~~p 110 (166)
T cd03223 70 PQRPYLP-LGTLREQLIYP---------------------------------WD-----DVLSGGEQQRLAFARLLLHKP 110 (166)
T ss_pred CCCCccc-cccHHHHhhcc---------------------------------CC-----CCCCHHHHHHHHHHHHHHcCC
Confidence 9998765 67999999752 11 349999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcE
Q 001270 662 SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGL 721 (1111)
Q Consensus 662 ~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~ 721 (1111)
++|||||||+|||+.++..+.+.|+++ +.|+|++||+++. ...+|++++|+++|.
T Consensus 111 ~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~--~~~~d~i~~l~~~~~ 165 (166)
T cd03223 111 KFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSL--WKFHDRVLDLDGEGG 165 (166)
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhH--HhhCCEEEEEcCCCC
Confidence 999999999999999999999999876 6899999999863 478999999998874
No 308
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.4e-35 Score=357.30 Aligned_cols=205 Identities=21% Similarity=0.300 Sum_probs=168.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||+|+|++ ++.+|+|+||+|++||.+||+||||||||||+++|+|++. |.+|+|++||+++. ...++++
T Consensus 322 ~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~ 398 (547)
T PRK10522 322 TLELRNVTFAYQD-NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPVTAEQPEDYRKL 398 (547)
T ss_pred eEEEEEEEEEeCC-CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCCCCHHHHhhh
Confidence 6899999999963 3569999999999999999999999999999999999765 68999999999864 3457889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
|+||+|++.+|+ .|++|| + . . ...+.++++++.+|+.+..+..-+......||||||||++|||||
T Consensus 399 i~~v~q~~~lf~-~ti~~n---~-~-----~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal 464 (547)
T PRK10522 399 FSAVFTDFHLFD-QLLGPE---G-K-----P----ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLAL 464 (547)
T ss_pred eEEEecChhHHH-Hhhccc---c-C-----c----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHH
Confidence 999999998885 488887 1 0 1 112346788899988765432111111357999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEe
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYH 725 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~ 725 (1111)
+++|++||||||||+||+.++..+.+.|.+..+ .|+|+|++||+++ ..+.+|++++|++| ++++.
T Consensus 465 ~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G-~i~e~ 530 (547)
T PRK10522 465 AEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNG-QLSEL 530 (547)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECC-EEEEe
Confidence 999999999999999999999999999986643 5899999999985 35789999999876 55543
No 309
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=356.04 Aligned_cols=209 Identities=21% Similarity=0.348 Sum_probs=172.8
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 581 (1111)
|+++||+++|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|. ..||||
T Consensus 2 l~i~~ls~~~~--~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~--------~~i~~~ 69 (530)
T PRK15064 2 LSTANITMQFG--AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN--------ERLGKL 69 (530)
T ss_pred EEEEEEEEEeC--CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--------CEEEEE
Confidence 68899999994 4679999999999999999999999999999999999765 57899999873 359999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHh-hc---------c-cc------------------chHHHHHHHHHHHHHHcCCCccc-
Q 001270 582 PQDDIVHGNLTVEENLWFHARC-RL---------S-AH------------------LAKADKVLVIERVIDTLGLQTVR- 631 (1111)
Q Consensus 582 ~Qd~~l~~~LTV~EnL~f~a~~-~~---------~-~~------------------~~~~~~~~~v~~vL~~LGL~~~~- 631 (1111)
+|++.+++.+||+||+.++... .. . .. ....+...+++++++.+||.+..
T Consensus 70 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 149 (530)
T PRK15064 70 RQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH 149 (530)
T ss_pred eccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh
Confidence 9999899999999999875310 00 0 00 00011234678899999997643
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcC
Q 001270 632 DSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFD 711 (1111)
Q Consensus 632 d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D 711 (1111)
++.+++ |||||||||+||++|+.+|+||||||||+|||+.++..+.+.|++ .|.|||+|||+++. +.+.+|
T Consensus 150 ~~~~~~-----LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~-~~~~~d 220 (530)
T PRK15064 150 YGLMSE-----VAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHF-LNSVCT 220 (530)
T ss_pred cCchhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHH-HHhhcc
Confidence 455554 999999999999999999999999999999999999999999864 58999999999975 568899
Q ss_pred eEEEEeCCcEE-EEecCHhhHH
Q 001270 712 DLVLLAKGGLT-VYHGSVKKVE 732 (1111)
Q Consensus 712 ~vilL~~GG~i-v~~G~~~~l~ 732 (1111)
++++|++| ++ ++.|+++++.
T Consensus 221 ~i~~l~~g-~i~~~~g~~~~~~ 241 (530)
T PRK15064 221 HMADLDYG-ELRVYPGNYDEYM 241 (530)
T ss_pred eEEEEeCC-EEEEecCCHHHHH
Confidence 99999875 55 6899987664
No 310
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.1e-36 Score=357.56 Aligned_cols=215 Identities=22% Similarity=0.326 Sum_probs=176.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc----cccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH----SYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~----~~r~ 576 (1111)
.|+++|++. .+|+||||+|++||++||+|||||||||||++|+|+.. +.+|+|.++|+++... ..++
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhC
Confidence 488899983 26999999999999999999999999999999999764 5789999999875321 1346
Q ss_pred cEEEEccCC---CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHH
Q 001270 577 IIGFVPQDD---IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 577 ~IgyV~Qd~---~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
.|+||||++ .+++.+||.||+..................+.++++++.+||. +..++.+++ |||||||||+
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~kqrl~ 413 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAART-----LSGGNQQKVL 413 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcccc-----CCcHHHHHHH
Confidence 799999984 4788899999996431110000011122234678999999997 677887765 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++|||++. +.+++|++++|.+ |++++.|.++++
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~-i~~~~d~i~~l~~-G~i~~~~~~~~~ 490 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEE-IEQMADRVLVMHQ-GEISGALTGAAI 490 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEEEccccC
Confidence 9999999999999999999999999999999999998889999999999975 5689999999986 578888876543
No 311
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-35 Score=310.88 Aligned_cols=234 Identities=26% Similarity=0.390 Sum_probs=201.2
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC----ccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP----IHSYK 575 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~----~~~~r 575 (1111)
..|+++||+++..++ ++||++||++|++||+.+||||||||||||.++|+|.-.+..++|+|.++|+++. ....|
T Consensus 2 ~~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred ceeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 358999999999532 5899999999999999999999999999999999997666788999999999863 23467
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRVHVG 654 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRVaIA 654 (1111)
..|...||.|.=++..|+.+.|..+.+.+....-...+-...+++.++.++++. +.++.++. |+|||||||.-|+
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFSGGEkKR~Eil 156 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFSGGEKKRNEIL 156 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcCcchHHHHHHH
Confidence 789999999999999999999998766432221112233456788999999986 78888876 7999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhc--CeEEEEeCCcEEEEecCHhhHH
Q 001270 655 LEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMF--DDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 655 rALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~--D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
..++.+|++.|||||-||||..+-+.|-+.+.+++.+|.++++|||..+ +..+. |++.+|.+ |+|+..|.+ ++.
T Consensus 157 Q~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r--ll~~i~pD~vhvl~~-GrIv~sG~~-el~ 232 (251)
T COG0396 157 QLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR--LLDYIKPDKVHVLYD-GRIVKSGDP-ELA 232 (251)
T ss_pred HHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHhhcCCCEEEEEEC-CEEEecCCH-HHH
Confidence 9999999999999999999999999999999999999999999999976 44666 99999987 589999999 888
Q ss_pred HHHHhCCCCC
Q 001270 733 EYFAGLGINV 742 (1111)
Q Consensus 733 ~~f~~~g~~~ 742 (1111)
++++..|+.+
T Consensus 233 ~~le~~gy~~ 242 (251)
T COG0396 233 EELEEKGYDW 242 (251)
T ss_pred HHHHHhchHH
Confidence 8998888753
No 312
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.6e-35 Score=335.55 Aligned_cols=187 Identities=29% Similarity=0.450 Sum_probs=161.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHH
Q 001270 534 VMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKA 612 (1111)
Q Consensus 534 IiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~ 612 (1111)
|+|||||||||||++|+|+.. +++|+|.++|+++.. ...++.||||+|++.+++++||+||+.|+...+ .....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999775 689999999988632 234678999999999999999999999976432 12233
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 001270 613 DKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE- 691 (1111)
Q Consensus 613 ~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~- 691 (1111)
+..++++++++.+||.+..++.+.+ |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQ-----LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 3445688999999999888887765 9999999999999999999999999999999999999999999998765
Q ss_pred CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 692 GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 692 G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+|||++||++++ +.+++|++++|.+ |+++..|+++++.
T Consensus 151 g~tiiivTHd~~e-~~~~~d~i~vl~~-G~i~~~g~~~~~~ 189 (325)
T TIGR01187 151 GITFVFVTHDQEE-AMTMSDRIAIMRK-GKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 8999999999975 5688999999986 5789999998774
No 313
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.6e-35 Score=355.62 Aligned_cols=210 Identities=26% Similarity=0.332 Sum_probs=172.8
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||+++|++ ++.+|+||||+|++|++++|+|||||||||||++|+|+.. +++|+|.+++. ..|||
T Consensus 6 ~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~--------~~i~~ 74 (556)
T PRK11819 6 IYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG--------IKVGY 74 (556)
T ss_pred EEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--------CEEEE
Confidence 5899999999941 4679999999999999999999999999999999999765 57899999752 46999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHh-h-----cc---c--cchH----------------------HHHHHHHHHHHHHcCC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARC-R-----LS---A--HLAK----------------------ADKVLVIERVIDTLGL 627 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~-~-----~~---~--~~~~----------------------~~~~~~v~~vL~~LGL 627 (1111)
|+|++.+++.+||.||+.++... . .. . .... .+...+++++++.+||
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 154 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC 154 (556)
T ss_pred EecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC
Confidence 99999999999999999875321 0 00 0 0000 0113457788999999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHH
Q 001270 628 QTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALF 707 (1111)
Q Consensus 628 ~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~ 707 (1111)
.. .++.+++ |||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+|||+++. +.
T Consensus 155 ~~-~~~~~~~-----LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd~~~-~~ 224 (556)
T PRK11819 155 PP-WDAKVTK-----LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHDRYF-LD 224 (556)
T ss_pred Cc-ccCchhh-----cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCCHHH-HH
Confidence 64 5777665 9999999999999999999999999999999999999999999886 2599999999975 45
Q ss_pred HhcCeEEEEeCCcEEEEecCHhhH
Q 001270 708 RMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 708 ~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+.+|++++|.+|+.+.+.|+.++.
T Consensus 225 ~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 225 NVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred hhcCeEEEEeCCEEEEecCCHHHH
Confidence 789999999876433488988764
No 314
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.9e-35 Score=320.21 Aligned_cols=199 Identities=23% Similarity=0.293 Sum_probs=159.3
Q ss_pred eEeeeEEEEe-----CCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCC
Q 001270 518 LLRCVTGKIR-----PGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLT 592 (1111)
Q Consensus 518 IL~~VS~~I~-----~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LT 592 (1111)
.+++++++++ +||+++|+|||||||||||++|+|+.. +.+|+|.++|. .|+|++|+...+..+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc---------eEEEecccccCCCCCC
Confidence 5666666665 799999999999999999999999765 68899999984 5999999988777899
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001270 593 VEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672 (1111)
Q Consensus 593 V~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSG 672 (1111)
|+||+.+...... . ....++++++.+||.+..++.+++ |||||||||+||+||+.+|++|||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~~-----LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVPE-----LSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976432111 0 012356788999998887877765 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEE-EEecCHhh----HHHHHHhCCC
Q 001270 673 LDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLT-VYHGSVKK----VEEYFAGLGI 740 (1111)
Q Consensus 673 LD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~i-v~~G~~~~----l~~~f~~~g~ 740 (1111)
||+.++..+.+.|++++++ |+|||++||+++. +..++|++++|..+... -..+++.+ +..|++..++
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~-~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM-IDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDI 218 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEcCCCeeEEEeCCchHHHHHHHHHHHHCCC
Confidence 9999999999999998764 8999999999874 45789999999653221 13344444 3445555544
No 315
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.4e-35 Score=388.99 Aligned_cols=216 Identities=22% Similarity=0.346 Sum_probs=181.0
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 576 (1111)
..|+|+||+++|+.+.+.+|+||||+|++||.+||+|+||||||||+++|.|++. +.+|+|++||.++. ...+|+
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEccccCHHHHHh
Confidence 3699999999997554579999999999999999999999999999999999765 68899999999863 456899
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-------TVRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-------~~~d~~vg~~~~rgLSGGQrQ 649 (1111)
+|++||||+.+|.. |++|||.... ..+++ .+.++++..++. +-.|+.+++ .+..|||||||
T Consensus 1361 ~i~iVpQdp~LF~g-TIr~NLdp~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQ 1428 (1522)
T TIGR00957 1361 KITIIPQDPVLFSG-SLRMNLDPFS------QYSDE----EVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQ 1428 (1522)
T ss_pred cCeEECCCCcccCc-cHHHHcCccc------CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHH
Confidence 99999999999975 9999996321 11221 234455555543 234666765 44579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
|++|||||+++|+|||||||||+||+++...|.+.|++.. +++|||+|+|+++. ...+|+|++|++ |++++.|+++
T Consensus 1429 rl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~-G~IvE~G~~~ 1504 (1522)
T TIGR00957 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDK-GEVAEFGAPS 1504 (1522)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999998864 58999999999874 467999999986 5899999999
Q ss_pred hHHH
Q 001270 730 KVEE 733 (1111)
Q Consensus 730 ~l~~ 733 (1111)
++.+
T Consensus 1505 eLl~ 1508 (1522)
T TIGR00957 1505 NLLQ 1508 (1522)
T ss_pred HHHh
Confidence 8863
No 316
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.1e-35 Score=300.69 Aligned_cols=158 Identities=29% Similarity=0.492 Sum_probs=140.4
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----cccccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKKI 577 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~~ 577 (1111)
|+++||++.|+ ++++|+++||+|++||+++|+|||||||||||++|+|+.. +.+|+|.++|+++.. ...++.
T Consensus 1 l~~~~l~~~~~--~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~~ 76 (163)
T cd03216 1 LELRGITKRFG--GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPRDARRAG 76 (163)
T ss_pred CEEEEEEEEEC--CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHHHHHhcC
Confidence 46899999994 4579999999999999999999999999999999999765 688999999987542 124567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
++|++| ||||||||++|||||
T Consensus 77 i~~~~q-----------------------------------------------------------LS~G~~qrl~laral 97 (163)
T cd03216 77 IAMVYQ-----------------------------------------------------------LSVGERQMVEIARAL 97 (163)
T ss_pred eEEEEe-----------------------------------------------------------cCHHHHHHHHHHHHH
Confidence 999988 899999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEE
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVY 724 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~ 724 (1111)
+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++.. +.+.+|++++|.+| ++++
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-~~~~~d~~~~l~~g-~i~~ 162 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE-VFEIADRVTVLRDG-RVVG 162 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECC-EEEe
Confidence 99999999999999999999999999999998779999999999874 45789999999875 6553
No 317
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=7.8e-35 Score=356.99 Aligned_cols=219 Identities=22% Similarity=0.367 Sum_probs=188.4
Q ss_pred EEEEEeEEEEEcCC--cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cc--
Q 001270 501 EVSFKDLTLTLKGK--NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HS-- 573 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~--~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~-- 573 (1111)
.|+++|+++.|+.+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+.+ +++|+|.++|+++.. ..
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcCcCCHHHHH
Confidence 48899999999632 2579999999999999999999999999999999999865 688999999987542 11
Q ss_pred --ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 001270 574 --YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 574 --~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
.++.++|++|++.+++++|+.||+.+..... .....+..+++.++++.+||.+..++.+++ |||||+||+
T Consensus 82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~-----LS~Gq~qrv 153 (648)
T PRK10535 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPSQ-----LSGGQQQRV 153 (648)
T ss_pred HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCccc-----CCHHHHHHH
Confidence 2468999999999999999999998865321 122334455788999999999888887765 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+|||+|+.+|++|||||||+|||+.+++.+.+.|+++.++|+|+|++||+++. .+.+|++++|.+ |++++.|+.++.
T Consensus 154 ~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~--~~~~d~i~~l~~-G~i~~~g~~~~~ 230 (648)
T PRK10535 154 SIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQV--AAQAERVIEIRD-GEIVRNPPAQEK 230 (648)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHH--HHhCCEEEEEEC-CEEEeecCcccc
Confidence 99999999999999999999999999999999999988779999999999874 357999999987 578999999876
Q ss_pred H
Q 001270 732 E 732 (1111)
Q Consensus 732 ~ 732 (1111)
.
T Consensus 231 ~ 231 (648)
T PRK10535 231 V 231 (648)
T ss_pred c
Confidence 4
No 318
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.6e-35 Score=390.29 Aligned_cols=215 Identities=20% Similarity=0.324 Sum_probs=182.1
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 576 (1111)
-.|+|+||+++|+.+.+.+|+||||+|++||.+||+|+||||||||+++|.|++. +.+|+|++||.++. .+.+|+
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccCCHHHHHh
Confidence 3699999999997655569999999999999999999999999999999999775 68899999999863 457899
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-------VRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-------~~d~~vg~~~~rgLSGGQrQ 649 (1111)
.||||||++.+|.. ||+|||.... ..+. +.+.++++..||.+ -.|+.+++ .+..|||||||
T Consensus 1385 ~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQ 1452 (1560)
T PTZ00243 1385 QFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQ 1452 (1560)
T ss_pred cceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHH
Confidence 99999999999965 9999996421 1122 23566666666644 34667765 45679999999
Q ss_pred HHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 650 RVHVGLEMVME-PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 650 RVaIArALl~~-P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|++|||||+++ |+|||||||||+||+.+...|.+.|++.. +++|||+|+|+++. ...+|+|++|++ |++++.|++
T Consensus 1453 rLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVLd~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1453 LMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT--VAQYDKIIVMDH-GAVAEMGSP 1528 (1560)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH--HHhCCEEEEEEC-CEEEEECCH
Confidence 99999999996 89999999999999999999999998853 57999999999863 478999999986 589999999
Q ss_pred hhHH
Q 001270 729 KKVE 732 (1111)
Q Consensus 729 ~~l~ 732 (1111)
+++.
T Consensus 1529 ~eLl 1532 (1560)
T PTZ00243 1529 RELV 1532 (1560)
T ss_pred HHHH
Confidence 9885
No 319
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.3e-35 Score=384.84 Aligned_cols=213 Identities=23% Similarity=0.381 Sum_probs=172.2
Q ss_pred EEEEEeEEEEEcCC-cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEEC-CeeC---Cccccc
Q 001270 501 EVSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILIN-GKNE---PIHSYK 575 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~-~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~in-G~~~---~~~~~r 575 (1111)
.|+++||+|+|+.. .+.+|+||||+|++||++||+||||||||||+++|+|++. |++|+|+++ |.++ +...+|
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~~i~~~~~~~lr 459 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSHNLKDINLKWWR 459 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCcchhhCCHHHHH
Confidence 68999999999643 2479999999999999999999999999999999999765 689999995 5654 234578
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhc---------cc------------------------------cch------
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRL---------SA------------------------------HLA------ 610 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~---------~~------------------------------~~~------ 610 (1111)
+.||||+|++.+|+ .||+|||.++..... .. ...
T Consensus 460 ~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 460 SKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred HhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 89999999999996 599999998642000 00 000
Q ss_pred ---HHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 001270 611 ---KADKVLVIERVIDTLGLQTV-------RDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQL 680 (1111)
Q Consensus 611 ---~~~~~~~v~~vL~~LGL~~~-------~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~ 680 (1111)
.....+.+.++++.+++.+. .|+.+++ .+..|||||||||+|||||+++|+|||||||||+||+.++..
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 00112346677777776544 3555664 456799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 681 LLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 681 Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
|.+.|+++.+ +|+|+|+|+|+++. .+.+|++++|++|
T Consensus 618 i~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl~~g 655 (1466)
T PTZ00265 618 VQKTINNLKGNENRITIIIAHRLST--IRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEEeCC
Confidence 9999999875 58999999999974 3789999999874
No 320
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.7e-35 Score=352.33 Aligned_cols=212 Identities=26% Similarity=0.324 Sum_probs=171.8
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||+++|++ .+.+|+||||+|++|++++|+|||||||||||++|+|+.. +++|+|.+++ +..|||
T Consensus 4 ~i~~~nls~~~~~-~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~--------~~~i~~ 72 (552)
T TIGR03719 4 IYTMNRVSKVVPP-KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAP--------GIKVGY 72 (552)
T ss_pred EEEEeeEEEecCC-CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecC--------CCEEEE
Confidence 5889999999952 4579999999999999999999999999999999999765 5889999975 246999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHh-hc-----c-----ccchHHH----------------------HHHHHHHHHHHcCC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARC-RL-----S-----AHLAKAD----------------------KVLVIERVIDTLGL 627 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~-~~-----~-----~~~~~~~----------------------~~~~v~~vL~~LGL 627 (1111)
|+|++.+++++||+||+.++... +. . ......+ ...+++++++.+|+
T Consensus 73 v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 152 (552)
T TIGR03719 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC 152 (552)
T ss_pred EeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC
Confidence 99999999999999999875321 00 0 0000000 11346677888888
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHH
Q 001270 628 QTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALF 707 (1111)
Q Consensus 628 ~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~ 707 (1111)
.. .++.+++ |||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+|||+++. +.
T Consensus 153 ~~-~~~~~~~-----LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~-~~ 222 (552)
T TIGR03719 153 PP-WDADVTK-----LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYF-LD 222 (552)
T ss_pred Cc-ccCchhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHH-HH
Confidence 54 4666654 9999999999999999999999999999999999999999999875 3599999999875 55
Q ss_pred HhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 708 RMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 708 ~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
..+|++++|.+|..+++.|+.+++.+
T Consensus 223 ~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 223 NVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred hhcCeEEEEECCEEEEecCCHHHHHH
Confidence 78999999987644458899876543
No 321
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-35 Score=350.91 Aligned_cols=203 Identities=23% Similarity=0.369 Sum_probs=170.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||+++|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|+.. +++|+|.++|+ +.+||
T Consensus 319 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~--------~~i~~ 386 (530)
T PRK15064 319 ALEVENLTKGFD--NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN--------ANIGY 386 (530)
T ss_pred eEEEEeeEEeeC--CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--------eEEEE
Confidence 589999999994 4579999999999999999999999999999999999764 67899999873 46999
Q ss_pred EccCCC--CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 581 VPQDDI--VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 581 V~Qd~~--l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
|+|++. +++.+||+||+.+... . . ...+.++++++.+|+. +..++.+++ |||||||||+|||+|
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~~~~~---~---~--~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~qrv~la~al 453 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMSQWRQ---E---G--DDEQAVRGTLGRLLFSQDDIKKSVKV-----LSGGEKGRMLFGKLM 453 (530)
T ss_pred EcccccccCCCCCcHHHHHHHhcc---C---C--ccHHHHHHHHHHcCCChhHhcCcccc-----cCHHHHHHHHHHHHH
Confidence 999864 5567999999865211 0 0 1123578899999994 567777765 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+.+|+||||||||+|||+.++..+.+.|+++ +.|||++|||++. +.+.+|++++|.+|+.+.+.|+++++.
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~-~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDREF-VSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHH-HHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 9999999999999999999999999999876 4599999999975 457899999998764333889887653
No 322
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.2e-35 Score=349.51 Aligned_cols=214 Identities=22% Similarity=0.334 Sum_probs=169.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~ 576 (1111)
.|+++|+++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+.+ .+++|+|.++|++... ...++
T Consensus 260 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYN--DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP-QGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEEC--CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-cccCCeEEEecccCCCCCCHHHHHh
Confidence 489999999994 4579999999999999999999999999999999999642 1258999999976421 12456
Q ss_pred cEEEEccCCCCCC--CCCHHHHHHHHHHh--hccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHH
Q 001270 577 IIGFVPQDDIVHG--NLTVEENLWFHARC--RLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~--~LTV~EnL~f~a~~--~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
.|||++|++.++. ..|+++++.++... ........ +..+.++++++.+||.+ ..++.+++ |||||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~qrv 410 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSD-RQQKLAQQWLDILGIDKRTADAPFHS-----LSWGQQRLA 410 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCH-HHHHHHHHHHHHcCCchhhccCchhh-----CCHHHHHHH
Confidence 7999999976543 35777776543211 00001111 22346789999999987 77887765 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCccHHHHH-hcCeEEEEeCCcEEEEe
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEG-VNICLVVHQPSYALFR-MFDDLVLLAKGGLTVYH 725 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G-~TVIivtHq~~~~i~~-~~D~vilL~~GG~iv~~ 725 (1111)
+|||||+.+|+||||||||+|||+.++..+.+.|++++++| .|||++|||++.. .+ .+|++++|.+| ++++.
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~-~~~~~d~v~~l~~G-~i~~~ 484 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA-PACITHRLEFVPDG-DIYRY 484 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh-hhhhheeEEEecCC-ceEEe
Confidence 99999999999999999999999999999999999998775 4799999998753 34 57899999875 55543
No 323
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.2e-34 Score=349.77 Aligned_cols=207 Identities=21% Similarity=0.320 Sum_probs=169.2
Q ss_pred eEEEEEeEEEEEcCC---cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cc
Q 001270 500 IEVSFKDLTLTLKGK---NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HS 573 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~---~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~ 573 (1111)
..|+++||+|+|++. .+.+|+|+||++++||++||+||||||||||+++|+|++. |++|+|.+||.++.. ..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAAVSADSRDD 413 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHH
Confidence 468999999999643 2369999999999999999999999999999999999765 689999999998642 45
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccC-ccCCCCCHHHHHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGT-VEKRGISGGQRKRVH 652 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~-~~~rgLSGGQrQRVa 652 (1111)
+++.++||+|++.+|.. |+++|+. .. ..++.++++++.+++.+..+..+.. .....||||||||++
T Consensus 414 ~~~~i~~v~q~~~lf~~-ti~~n~~--------~~----~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRla 480 (555)
T TIGR01194 414 YRDLFSAIFADFHLFDD-LIGPDEG--------EH----ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLA 480 (555)
T ss_pred HHhhCcEEccChhhhhh-hhhcccc--------cc----hhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHH
Confidence 77899999999988854 8888841 01 1123467888999988765543321 112469999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEE
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALR-REALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVY 724 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~-~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~ 724 (1111)
|||||+.+|+||||||||++||+.++..+.+.+. .+..+|+|+|++||+++ ..+.+|++++|++| ++++
T Consensus 481 laRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G-~i~~ 550 (555)
T TIGR01194 481 LICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAG-CIVK 550 (555)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECC-EEEE
Confidence 9999999999999999999999999999998764 45557899999999986 34789999999875 6554
No 324
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-35 Score=348.15 Aligned_cols=216 Identities=22% Similarity=0.342 Sum_probs=174.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc----cccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH----SYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~----~~r~ 576 (1111)
.|+++||++.+ +.+|+||||+|++||+++|+||||||||||+++|+|+.. +.+|+|.++|+++... ..++
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHC
Confidence 48899999863 359999999999999999999999999999999999765 5899999999876321 2356
Q ss_pred cEEEEccCC---CCCCCCCHHHHHHHHH-Hhhcc-cc-chHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHH
Q 001270 577 IIGFVPQDD---IVHGNLTVEENLWFHA-RCRLS-AH-LAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 577 ~IgyV~Qd~---~l~~~LTV~EnL~f~a-~~~~~-~~-~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQ 649 (1111)
.+||++|+. .+++++|+.+|+.+.. ..... .. .......+.++++++.+++. +..++.+++ |||||||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~q 398 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGS-----LSGGNQQ 398 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccccc-----CCcHHHH
Confidence 699999985 4678888887743321 00000 01 11222334678899999995 456777765 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
||+|||+|+.+|+||||||||+|||+.++..+++.|+++.++|.|||++|||++. +.+++|++++|.+| +++..++.+
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~-~~~~~d~v~~l~~g-~i~~~~~~~ 476 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE-LLGITDRILVMSNG-LVAGIVDTK 476 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHH-HHhhCCEEEEEECC-EEEEEEccc
Confidence 9999999999999999999999999999999999999998889999999999976 46899999999874 677666543
No 325
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=322.43 Aligned_cols=223 Identities=24% Similarity=0.363 Sum_probs=193.6
Q ss_pred ceEEEEEeEEEEEcCC---------cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC
Q 001270 499 LIEVSFKDLTLTLKGK---------NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE 569 (1111)
Q Consensus 499 ~i~L~~~nLs~~y~~~---------~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~ 569 (1111)
..-++.+||.+.|+-+ ...++++||+++++||.++|+|.||||||||-.+|.+++. .+|+|.++|+++
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i 350 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDI 350 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccc
Confidence 3468999999988632 2368999999999999999999999999999999999874 459999999986
Q ss_pred Cc------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccC
Q 001270 570 PI------HSYKKIIGFVPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEK 640 (1111)
Q Consensus 570 ~~------~~~r~~IgyV~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~ 640 (1111)
.. ..+|+++-.||||| .+.|.|||.+-|.-+.....+ ..+.+++.+++.++|+++||+. .+++++.
T Consensus 351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh---- 425 (534)
T COG4172 351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYPH---- 425 (534)
T ss_pred cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCCc----
Confidence 42 24678999999997 578899999999988765533 4677888899999999999975 4566654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 641 RGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 641 rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
++|||||||++|||||+.+|++++||||||+||-.-+.+|+++|++|.+ .|.+-++|+||+.. +..++|++++|.+
T Consensus 426 -EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V-vrAl~~~viVm~~- 502 (534)
T COG4172 426 -EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV-VRALCHRVIVMRD- 502 (534)
T ss_pred -ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHHhhceEEEEeC-
Confidence 5999999999999999999999999999999999999999999999964 59999999999974 5689999999986
Q ss_pred cEEEEecCHhhHH
Q 001270 720 GLTVYHGSVKKVE 732 (1111)
Q Consensus 720 G~iv~~G~~~~l~ 732 (1111)
|+||++|+.+++.
T Consensus 503 GkiVE~G~~~~if 515 (534)
T COG4172 503 GKIVEQGPTEAVF 515 (534)
T ss_pred CEEeeeCCHHHHh
Confidence 5899999998874
No 326
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.1e-34 Score=317.34 Aligned_cols=201 Identities=24% Similarity=0.378 Sum_probs=159.4
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
..|+++|+++. .+.+|+||||+|++||+++|+|+||||||||+++|+|++. +.+|+|.++| .|+
T Consensus 38 ~~l~i~nls~~----~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g----------~i~ 101 (282)
T cd03291 38 NNLFFSNLCLV----GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG----------RIS 101 (282)
T ss_pred CeEEEEEEEEe----cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC----------EEE
Confidence 45889999985 2469999999999999999999999999999999999765 5789999988 399
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcccc-------ccccCccCCCCCHHHHHHHH
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRD-------SLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d-------~~vg~~~~rgLSGGQrQRVa 652 (1111)
|++|++.+++. ||+||+.+..... .. .+.++++.+++.+..+ +.++. .+..|||||||||+
T Consensus 102 yv~q~~~l~~~-tv~enl~~~~~~~------~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~qrv~ 169 (282)
T cd03291 102 FSSQFSWIMPG-TIKENIIFGVSYD------EY----RYKSVVKACQLEEDITKFPEKDNTVLGE-GGITLSGGQRARIS 169 (282)
T ss_pred EEeCccccccc-CHHHHhhcccccC------HH----HHHHHHHHhCCHHHHHhccccccceecC-CCCcCCHHHHHHHH
Confidence 99999988874 9999998753210 00 1122333334432221 12211 23469999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRAL-RREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L-~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|||+|+.+|++|||||||+|||+.++..+++.+ +++. ++.|||++||+++. + ..+|++++|.+ |++++.|+++++
T Consensus 170 lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~~~ 245 (282)
T cd03291 170 LARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHE-GSSYFYGTFSEL 245 (282)
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEEC-CEEEEECCHHHH
Confidence 999999999999999999999999999999865 4543 57999999999875 3 67999999987 578899998876
Q ss_pred H
Q 001270 732 E 732 (1111)
Q Consensus 732 ~ 732 (1111)
.
T Consensus 246 ~ 246 (282)
T cd03291 246 Q 246 (282)
T ss_pred H
Confidence 4
No 327
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.8e-34 Score=348.37 Aligned_cols=205 Identities=23% Similarity=0.381 Sum_probs=170.4
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||++.|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|.+++. ..|||
T Consensus 324 ~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~--------~~i~~ 391 (556)
T PRK11819 324 VIEAENLSKSFG--DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET--------VKLAY 391 (556)
T ss_pred EEEEEeEEEEEC--CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--------eEEEE
Confidence 589999999994 4679999999999999999999999999999999999765 68899999542 15999
Q ss_pred EccCC-CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 581 VPQDD-IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 581 V~Qd~-~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
|+|++ .+++.+||+||+.+...... .... ...++++++.+|+.+ ..++.+++ |||||||||+|||+|+
T Consensus 392 v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~~qrv~la~al~ 461 (556)
T PRK11819 392 VDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVGV-----LSGGERNRLHLAKTLK 461 (556)
T ss_pred EeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchhh-----CCHHHHHHHHHHHHHh
Confidence 99996 67888999999988643211 1111 123456899999964 46777765 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEE-EecCHhhH
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTV-YHGSVKKV 731 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv-~~G~~~~l 731 (1111)
.+|+||||||||+|||+.++..+.+.|+++ .| |||++|||++. +.+++|++++|.+||.+. +.|+.++.
T Consensus 462 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~-tvi~vtHd~~~-~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 462 QGGNVLLLDEPTNDLDVETLRALEEALLEF--PG-CAVVISHDRWF-LDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-eEEEEECCHHH-HHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 999999999999999999999999999986 24 89999999875 558899999998755554 67876654
No 328
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.9e-36 Score=301.45 Aligned_cols=202 Identities=25% Similarity=0.443 Sum_probs=172.1
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccccE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 578 (1111)
++++++.+ ..++..+|+++||++.+||.++|.||||||||||+|+++.+.. +++|++++.|++++ ...+|++|
T Consensus 4 le~kq~~y--~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~V 79 (223)
T COG4619 4 LELKQVGY--LAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQV 79 (223)
T ss_pred hHHHHHHh--hcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHH
Confidence 34445443 3356789999999999999999999999999999999999765 68999999999864 45789999
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
+|+.|.+.+|+. ||++||.|.-..+.... ......++|+.+++.+ ..++.+.+ ||||||||++|+|.|
T Consensus 80 sY~~Q~paLfg~-tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~k~it~-----lSGGE~QriAliR~L 148 (223)
T COG4619 80 SYCAQTPALFGD-TVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSILTKNITE-----LSGGEKQRIALIRNL 148 (223)
T ss_pred HHHHcCcccccc-chhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhhcchhhh-----ccchHHHHHHHHHHh
Confidence 999999999976 99999999866553322 1234677899999965 45666654 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREA-LEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la-~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
..-|+||+||||||+||+.+++.|-++|.++. .+.+.|+.||||+...+ +.+|+++-+..|
T Consensus 149 q~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~-rha~k~itl~~G 210 (223)
T COG4619 149 QFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAI-RHADKVITLQPG 210 (223)
T ss_pred hcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHh-hhhheEEEeccC
Confidence 99999999999999999999999999999986 66899999999998754 899999999875
No 329
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.2e-34 Score=347.21 Aligned_cols=205 Identities=26% Similarity=0.398 Sum_probs=170.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+|||||||||||++|+|+.. +++|+|.+++. ..|||
T Consensus 322 ~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~--------~~i~~ 389 (552)
T TIGR03719 322 VIEAENLSKGFG--DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET--------VKLAY 389 (552)
T ss_pred EEEEeeEEEEEC--CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--------eEEEE
Confidence 589999999994 4679999999999999999999999999999999999765 68899999542 15999
Q ss_pred EccCC-CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 581 VPQDD-IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 581 V~Qd~-~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
|+|++ .+++.+||.||+.++..... ....+ ..++++++.+||.+ ..++.+++ |||||||||+|||+|+
T Consensus 390 v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~l~~~~l~~~~~~~~~~~-----LSgGe~qrv~la~al~ 459 (552)
T TIGR03719 390 VDQSRDALDPNKTVWEEISGGLDIIQ---LGKRE--VPSRAYVGRFNFKGSDQQKKVGQ-----LSGGERNRVHLAKTLK 459 (552)
T ss_pred EeCCccccCCCCcHHHHHHhhccccc---cCcch--HHHHHHHHhCCCChhHhcCchhh-----CCHHHHHHHHHHHHHh
Confidence 99996 47888999999988643211 11111 23457899999964 46777765 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEE-EecCHhhH
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTV-YHGSVKKV 731 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv-~~G~~~~l 731 (1111)
.+|++|||||||+|||+.++..+.+.|+++. + |||++|||++. +.+.+|++++|++||+++ +.|+.++.
T Consensus 460 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~~-~~~~~d~i~~l~~~~~~~~~~g~~~~~ 529 (552)
T TIGR03719 460 SGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRWF-LDRIATHILAFEGDSHVEWFEGNYSEY 529 (552)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHHH-HHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence 9999999999999999999999999999872 4 89999999875 457899999998765654 66776543
No 330
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.8e-34 Score=379.96 Aligned_cols=214 Identities=21% Similarity=0.336 Sum_probs=182.2
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 576 (1111)
..|+|+||+++|+.+.+.+|+||||+|++||.+||+|+||||||||+++|.|++. .+|+|+|||.++. ...+|+
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEcccCCHHHHHh
Confidence 4699999999997656789999999999999999999999999999999999863 5899999999864 456889
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-------VRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-------~~d~~vg~~~~rgLSGGQrQ 649 (1111)
+|+||||++.+|+. ||+|||.... ..+. +.+.++++.++|.+ -.|+.+++ .+..|||||||
T Consensus 1293 ~is~IpQdp~LF~G-TIR~NLdp~~------~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQ 1360 (1490)
T TIGR01271 1293 AFGVIPQKVFIFSG-TFRKNLDPYE------QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQ 1360 (1490)
T ss_pred ceEEEeCCCccCcc-CHHHHhCccc------CCCH----HHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHH
Confidence 99999999999975 9999995421 1122 23566777776643 34666765 45579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
|++|||||+++|+|||||||||+||..+...|.+.|++.. +++|||+|+|+++. ...+|+|++|++ |++++.|+++
T Consensus 1361 rL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t--i~~~DrIlvL~~-G~ivE~g~p~ 1436 (1490)
T TIGR01271 1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA--LLECQQFLVIEG-SSVKQYDSIQ 1436 (1490)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999999999999864 57999999999864 467999999986 5899999999
Q ss_pred hHH
Q 001270 730 KVE 732 (1111)
Q Consensus 730 ~l~ 732 (1111)
++.
T Consensus 1437 ~Ll 1439 (1490)
T TIGR01271 1437 KLL 1439 (1490)
T ss_pred HHH
Confidence 885
No 331
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=3.3e-34 Score=306.30 Aligned_cols=195 Identities=16% Similarity=0.183 Sum_probs=158.8
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEE-ECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLIL-INGKNEPIHSYKKIIGFVPQDDIVHGNLTVEE 595 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~-inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 595 (1111)
.+|+||||+|++||+++|+||||||||||+++|+|+.. +.+|+|. ++|.... +.+++.+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~~----------~~~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDALP----------LGANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCceec----------cccccccCCcCcHHH
Confidence 37999999999999999999999999999999999765 6889997 7775321 234567888999999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001270 596 NLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDS 675 (1111)
Q Consensus 596 nL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~ 675 (1111)
|+.+...... ....+ ..+.+.+.++|....++.+++ ||||||||++|||||+.+|+++||||||++||+
T Consensus 69 nl~~~~~~~~---~~~~~---~~~~~~~~~~l~~~~~~~~~~-----lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYG---LDGDE---FSHFCYQLTQLEQCYTDRVSE-----YSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcC---CCHHH---HHHHHHHHhChhHHhhchHhh-----cCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 9998765321 12211 123344567887777777765 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHHHh
Q 001270 676 ASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYFAG 737 (1111)
Q Consensus 676 ~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f~~ 737 (1111)
.++..+.+.|.+..+ ++|+|++||+++. +.+.+|++++|.+ |++++.|+.+++..+++.
T Consensus 138 ~~~~~~~~~l~~~~~-~~~ii~vsH~~~~-~~~~~d~i~~l~~-G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 138 ATQLRMQAALACQLQ-QKGLIVLTHNPRL-IKEHCHAFGVLLH-GKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHHhh-CCcEEEEECCHHH-HHHhcCeeEEEEC-CeEEEeCCHHHHHHHHHH
Confidence 999999998865443 4689999999975 4578999999986 578999999998877654
No 332
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=309.20 Aligned_cols=217 Identities=27% Similarity=0.426 Sum_probs=181.6
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC---Cc-cccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE---PI-HSYK 575 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~-~~~r 575 (1111)
.-|+++|++++| ++|.||+|||++|++||-.+|+|||||||||||++|+|... +.+|.+.+.|+.. +. .++|
T Consensus 30 ~li~l~~v~v~r--~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~--pssg~~~~~G~~~G~~~~~~elr 105 (257)
T COG1119 30 PLIELKNVSVRR--NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP--PSSGDVTLLGRRFGKGETIFELR 105 (257)
T ss_pred ceEEecceEEEE--CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC--CCCCceeeeeeeccCCcchHHHH
Confidence 458999999999 66899999999999999999999999999999999999665 5699999999874 22 5689
Q ss_pred ccEEEEccC--CCCCCCCCHHHHHHHHHH--hhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 001270 576 KIIGFVPQD--DIVHGNLTVEENLWFHAR--CRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 576 ~~IgyV~Qd--~~l~~~LTV~EnL~f~a~--~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
++||+|.-. ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|+.+.+|+..++ ||-||||||
T Consensus 106 k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~-----LS~Ge~rrv 180 (257)
T COG1119 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS-----LSQGEQRRV 180 (257)
T ss_pred HHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhh-----cCHhHHHHH
Confidence 999999753 344556788888754321 11111122344556789999999999999999987 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE--GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~--G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
-|||||+.+|++||||||++|||...+..+++.|.+++.. +.++|+|||+.++ +-.-+++++++.+| +++++|.
T Consensus 181 LiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eE-i~~~~th~lll~~g-~v~~~g~ 256 (257)
T COG1119 181 LIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEE-IPPCFTHRLLLKEG-EVVAQGK 256 (257)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhh-cccccceEEEeeCC-ceeeccc
Confidence 9999999999999999999999999999999999999865 8899999999875 55789999999864 7788773
No 333
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7e-34 Score=344.44 Aligned_cols=196 Identities=30% Similarity=0.373 Sum_probs=169.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++|+++.|+ + ..|+++||+|++||+++|+|||||||||||++|+|+.. +++|+|.++ ..|||
T Consensus 340 ~l~~~~ls~~~~--~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~----------~~i~y 404 (590)
T PRK13409 340 LVEYPDLTKKLG--D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE----------LKISY 404 (590)
T ss_pred EEEEcceEEEEC--C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----------eeEEE
Confidence 589999999994 3 35999999999999999999999999999999999765 688999985 14999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
++|+..+++.+||+||+.+.... ... ...++++++.+||.+..++.+++ |||||||||+|||+|+.+
T Consensus 405 ~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~~-----LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 405 KPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNVKD-----LSGGELQRVAIAACLSRD 471 (590)
T ss_pred ecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCccc-----CCHHHHHHHHHHHHHhcC
Confidence 99998888899999999875321 111 12467899999999888888876 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
|+||||||||+|||+.++..+.++|++++++ |+|||++|||+.. +..++|++++|. | ++..+|.
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~-~~~~aDrvivl~-~-~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYM-IDYISDRLMVFE-G-EPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEc-C-cceeeee
Confidence 9999999999999999999999999999764 8999999999875 457899999995 4 5566665
No 334
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=315.61 Aligned_cols=224 Identities=24% Similarity=0.399 Sum_probs=187.9
Q ss_pred EEEEeEEEEEc--CCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC---CceeEEEECCeeC---Cccc
Q 001270 502 VSFKDLTLTLK--GKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC---KATGLILINGKNE---PIHS 573 (1111)
Q Consensus 502 L~~~nLs~~y~--~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~---~~sG~I~inG~~~---~~~~ 573 (1111)
|+++||++.|. ++...++++|||+|.+||.+||+|.||||||-..+.|+|+++.. ..+|+|.++|+++ +...
T Consensus 7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~ 86 (534)
T COG4172 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ 86 (534)
T ss_pred eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence 67899999885 34578999999999999999999999999999999999987542 3579999999885 2222
Q ss_pred cc----ccEEEEccCCC--CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 001270 574 YK----KIIGFVPQDDI--VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 574 ~r----~~IgyV~Qd~~--l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQ 647 (1111)
++ .+|+++||+|. |.|-.|+.+.|.-..++. .++.+.+.++++.++++.+|+.+-..+.- ..+++|||||
T Consensus 87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~--~yPHeLSGGq 162 (534)
T COG4172 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLD--AYPHELSGGQ 162 (534)
T ss_pred HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhh--hCCcccCcch
Confidence 22 47999999984 566678888887665543 35667777788999999999976543322 3577899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
||||.||+||+.+|++||.||||++||...+.+|+++|++|.++ |..+++||||+.. +.+++|+|.+|.+ |.+++.|
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~VM~~-G~ivE~~ 240 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVYVMQH-GEIVETG 240 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEEEEec-cEEeecC
Confidence 99999999999999999999999999999999999999999755 9999999999985 5689999999987 5899999
Q ss_pred CHhhH
Q 001270 727 SVKKV 731 (1111)
Q Consensus 727 ~~~~l 731 (1111)
..+++
T Consensus 241 ~t~~l 245 (534)
T COG4172 241 TTETL 245 (534)
T ss_pred cHHHH
Confidence 98776
No 335
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.8e-34 Score=294.57 Aligned_cols=221 Identities=28% Similarity=0.439 Sum_probs=189.5
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECC-eeCCc----ccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILING-KNEPI----HSY 574 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG-~~~~~----~~~ 574 (1111)
..|+++||+++| +...+|+++||++.+||+-+|||||||||||++++|+|... |.+|+|+++| .++.. ...
T Consensus 4 ~iL~~~~vsVsF--~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr--p~~G~v~f~g~~dl~~~~e~~IA 79 (249)
T COG4674 4 IILYLDGVSVSF--GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR--PQEGEVLFDGDTDLTKLPEHRIA 79 (249)
T ss_pred ceEEEeceEEEE--cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC--CCcceEEEcCchhhccCCHHHHH
Confidence 357899999999 56789999999999999999999999999999999999654 6889999999 55421 124
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhhcc-----ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 001270 575 KKIIGFVPQDDIVHGNLTVEENLWFHARCRLS-----AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 575 r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~-----~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQ 649 (1111)
|..||--||.|.+|+.+||+|||.++...... ......+.+.+++++|...||.+.++...+. ||-||||
T Consensus 80 r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~-----LSHGqKQ 154 (249)
T COG4674 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL-----LSHGQKQ 154 (249)
T ss_pred HhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhh-----hccchhh
Confidence 56799999999999999999999987542110 0111234456899999999999999988876 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
++.|++-|+++|++|+||||++|+--......-++|+.++. +.+|++|.||+.+ +.+++++|-+|++ |.+...|+.+
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~F-vr~~A~~VTVlh~-G~VL~EGsld 231 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGF-VREIADKVTVLHE-GSVLAEGSLD 231 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHH-HHHhhheeEEEec-cceeecccHH
Confidence 99999999999999999999999999999999999999875 5799999999987 5689999999987 5789999998
Q ss_pred hHH
Q 001270 730 KVE 732 (1111)
Q Consensus 730 ~l~ 732 (1111)
++.
T Consensus 232 ~v~ 234 (249)
T COG4674 232 EVQ 234 (249)
T ss_pred Hhh
Confidence 874
No 336
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=306.70 Aligned_cols=186 Identities=24% Similarity=0.364 Sum_probs=161.3
Q ss_pred EEEEEeEEEEEcCCc-------ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCccc
Q 001270 501 EVSFKDLTLTLKGKN-------KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHS 573 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~-------k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~ 573 (1111)
.++++||++.|..+. ..+++||||+|++||+++|+|.||||||||-|+|.|+.. |++|+|+++|+++...
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~i~~~- 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKDITKL- 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcchhhc-
Confidence 478999999996432 479999999999999999999999999999999999875 6899999999874321
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
. +.+..+++.++|+.+||.. ..++++ ++||||||||++
T Consensus 81 -~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----helSGGQrQRi~ 119 (268)
T COG4608 81 -S-----------------------------------KEERRERVLELLEKVGLPEEFLYRYP-----HELSGGQRQRIG 119 (268)
T ss_pred -c-----------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----cccCchhhhhHH
Confidence 1 2334456899999999864 566665 459999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|||||+.+|+++++|||||+||...+.+++++|+++.++ |.|.++++||++. +..++|++.+|.. |++++.|+.+++
T Consensus 120 IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v-v~~isdri~VMy~-G~iVE~g~~~~~ 197 (268)
T COG4608 120 IARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV-VRYISDRIAVMYL-GKIVEIGPTEEV 197 (268)
T ss_pred HHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh-hhhhcccEEEEec-CceeEecCHHHH
Confidence 999999999999999999999999999999999999865 9999999999985 5678999999987 589999999887
Q ss_pred H
Q 001270 732 E 732 (1111)
Q Consensus 732 ~ 732 (1111)
.
T Consensus 198 ~ 198 (268)
T COG4608 198 F 198 (268)
T ss_pred h
Confidence 4
No 337
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.6e-33 Score=344.84 Aligned_cols=206 Identities=22% Similarity=0.350 Sum_probs=171.2
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
..|+++||++.|+ ++.+|+||||+|.+|++++|+|||||||||||++|+|+.. |++|+|.+ |.+ -.||
T Consensus 318 ~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~-------~~i~ 385 (635)
T PRK11147 318 IVFEMENVNYQID--GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTK-------LEVA 385 (635)
T ss_pred ceEEEeeeEEEEC--CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCC-------cEEE
Confidence 3589999999994 4679999999999999999999999999999999999764 68999998 432 1599
Q ss_pred EEccCC-CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 580 FVPQDD-IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 580 yV~Qd~-~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
|++|+. .+++.+||.||+.+..... .... ....+.++++.+++. +..++.+++ |||||||||+||++|
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTPVKA-----LSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhChhhh-----CCHHHHHHHHHHHHH
Confidence 999985 5888999999998754211 0111 123467889999995 456777765 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe-CCcEEEEecCHhhH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA-KGGLTVYHGSVKKV 731 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~-~GG~iv~~G~~~~l 731 (1111)
+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||... +..++|++++|. +|+.+.|.|+.++.
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~-~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQF-VDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHH-HHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999999999999999999999875 4599999999875 457899999997 66666778887654
No 338
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-34 Score=320.29 Aligned_cols=223 Identities=27% Similarity=0.412 Sum_probs=188.3
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC---Ccccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE---PIHSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~r~ 576 (1111)
-.+.|++++|.|. ..+++|+++||++++|+.+||+|+||+||||++++|-.++. ..+|.|.+||+++ ....+|+
T Consensus 261 g~v~F~~V~F~y~-~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id~qdir~vtq~slR~ 337 (497)
T COG5265 261 GAVAFINVSFAYD-PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITIDGQDIRDVTQQSLRR 337 (497)
T ss_pred ceEEEEEEEeecc-ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEcchhHHHhHHHHHHH
Confidence 3589999999996 46789999999999999999999999999999999999664 6899999999985 3456889
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
-||.||||..||. -|...|+.++...........+.+.+.+.++++.+ .+-.++.||+.+- .|||||||||+|||+
T Consensus 338 aIg~VPQDtvLFN-Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~l--P~gy~t~Vgergl-klSggekqrvaiar~ 413 (497)
T COG5265 338 AIGIVPQDTVLFN-DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL--PEGYDTGVGERGL-KLSGGEKQRVAIART 413 (497)
T ss_pred HhCcCcccceehh-hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhC--chhhhcccchhee-eccCchHHHHHHHHH
Confidence 9999999999985 59999999986644433444444455566666654 4456778887332 379999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
++++|+||+|||.||+||..++++|...|++.+ .|+|.+++.|+++.. --+|.+++|++ |+|++.|..+++..
T Consensus 414 ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti--~~adeiivl~~-g~i~erg~h~~ll~ 486 (497)
T COG5265 414 ILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTI--IDADEIIVLDN-GRIVERGTHEELLA 486 (497)
T ss_pred HhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhc--cCCceEEEeeC-CEEEecCcHHHHHH
Confidence 999999999999999999999999999999876 689999999999853 57999999987 58999999988764
No 339
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-33 Score=342.02 Aligned_cols=202 Identities=25% Similarity=0.385 Sum_probs=168.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||++.| +++.+|+||||+|.+|+++||+|||||||||||++|+|+.. +++|+|.+++. ..|||
T Consensus 312 ~l~~~~l~~~y--~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~--------~~igy 379 (638)
T PRK10636 312 LLKMEKVSAGY--GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG--------IKLGY 379 (638)
T ss_pred eEEEEeeEEEe--CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--------EEEEE
Confidence 58999999999 44679999999999999999999999999999999999764 68999999742 25999
Q ss_pred EccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 581 VPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 581 V~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
++|+. .+.+..||.+++... . .......++++++.+++. +..++.+++ |||||||||+||++|
T Consensus 380 ~~Q~~~~~l~~~~~~~~~~~~~---~------~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----LSgGekqRl~La~~l 445 (638)
T PRK10636 380 FAQHQLEFLRADESPLQHLARL---A------PQELEQKLRDYLGGFGFQGDKVTEETRR-----FSGGEKARLVLALIV 445 (638)
T ss_pred ecCcchhhCCccchHHHHHHHh---C------chhhHHHHHHHHHHcCCChhHhcCchhh-----CCHHHHHHHHHHHHH
Confidence 99974 345567888876421 0 011224578899999996 456777765 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEE-EecCHhhHHH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTV-YHGSVKKVEE 733 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv-~~G~~~~l~~ 733 (1111)
+.+|+||||||||+|||+.++..+.+.|+++ .| |||+||||+.. +.+++|++++|.+| +++ +.|+.++..+
T Consensus 446 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~~-~~~~~d~i~~l~~G-~i~~~~g~~~~~~~ 517 (638)
T PRK10636 446 WQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRHL-LRSTTDDLYLVHDG-KVEPFDGDLEDYQQ 517 (638)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHHH-HHHhCCEEEEEECC-EEEEcCCCHHHHHH
Confidence 9999999999999999999999999999987 34 99999999875 56889999999875 554 8899887643
No 340
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.8e-34 Score=305.80 Aligned_cols=209 Identities=24% Similarity=0.367 Sum_probs=177.6
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC--cccccccEEEEc-cCCCCCCCCCH
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP--IHSYKKIIGFVP-QDDIVHGNLTV 593 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~--~~~~r~~IgyV~-Qd~~l~~~LTV 593 (1111)
.+++||||+|++|++++++|||||||||+||+|+|++. |++|.|.++|.+.- .+.+-+.+++|+ |.-.+...+-+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 58999999999999999999999999999999999876 68999999998642 234556788886 44555556667
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001270 594 EENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGL 673 (1111)
Q Consensus 594 ~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGL 673 (1111)
.|.+......+ .++.++-.++.+.+.+.|+|+...+.++.. ||-|||.|+.||.+|+++|+||||||||-||
T Consensus 116 ~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~-----LSlGqRmraeLaaaLLh~p~VLfLDEpTvgL 187 (325)
T COG4586 116 LDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPVRK-----LSLGQRMRAELAAALLHPPKVLFLDEPTVGL 187 (325)
T ss_pred hhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhhhh-----ccchHHHHHHHHHHhcCCCcEEEecCCccCc
Confidence 77776644332 455566667889999999999988887754 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHHHh
Q 001270 674 DSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYFAG 737 (1111)
Q Consensus 674 D~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f~~ 737 (1111)
|..++..|.+.|++..+ ++.||+++||+.+. +.++||||++|+. |+++|+|+.+++.+.|..
T Consensus 188 DV~aq~~ir~Flke~n~~~~aTVllTTH~~~d-i~~lc~rv~~I~~-Gqlv~dg~l~~l~~~f~~ 250 (325)
T COG4586 188 DVNAQANIREFLKEYNEERQATVLLTTHIFDD-IATLCDRVLLIDQ-GQLVFDGTLAQLQEQFGP 250 (325)
T ss_pred chhHHHHHHHHHHHHHHhhCceEEEEecchhh-HHHhhhheEEeeC-CcEeecccHHHHHHHhCC
Confidence 99999999999999864 59999999999984 6799999999987 589999999999877643
No 341
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.6e-33 Score=309.22 Aligned_cols=200 Identities=24% Similarity=0.264 Sum_probs=162.4
Q ss_pred EeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEE-----------ECCeeCCc--
Q 001270 505 KDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLIL-----------INGKNEPI-- 571 (1111)
Q Consensus 505 ~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~-----------inG~~~~~-- 571 (1111)
.+|+++|+. .+.+|+|+| .+++||+++|+|||||||||||++|+|++. +++|+|. ++|++...
T Consensus 4 ~~~~~~y~~-~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~~~~~~ 79 (255)
T cd03236 4 DEPVHRYGP-NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSELQNYF 79 (255)
T ss_pred cCcceeecC-cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCchhhhhh
Confidence 467888842 236999999 499999999999999999999999999865 6899996 77876421
Q ss_pred cc-c--cccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 001270 572 HS-Y--KKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 572 ~~-~--r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQr 648 (1111)
.. . ...++|++|+..+++. ++.+++.+... .......+.++++.+||.+..++.+.+ ||||||
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~ 145 (255)
T cd03236 80 TKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRNIDQ-----LSGGEL 145 (255)
T ss_pred HHhhhcccceeeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHH
Confidence 11 1 1248999999888774 88888876431 112234578899999998877776654 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEe
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYH 725 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~ 725 (1111)
||++|||+|+.+|+++||||||++||+.++..+.+.|++++++|+|||++||+++. +.+++|++++|. | .+.++
T Consensus 146 qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~-~~~~ad~i~~l~-~-~~~~~ 219 (255)
T cd03236 146 QRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAV-LDYLSDYIHCLY-G-EPGAY 219 (255)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEEC-C-CCCcc
Confidence 99999999999999999999999999999999999999998779999999999875 456899999995 4 34443
No 342
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=6.2e-33 Score=340.72 Aligned_cols=201 Identities=19% Similarity=0.315 Sum_probs=162.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||++.|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ +.+|+|.+++ ++.++|
T Consensus 451 ~i~~~nv~~~~~~-~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~--~~~G~i~~~~--------~~~i~~ 519 (659)
T TIGR00954 451 GIKFENIPLVTPN-GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP--VYGGRLTKPA--------KGKLFY 519 (659)
T ss_pred eEEEEeeEEECCC-CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEeecC--------CCcEEE
Confidence 4899999999853 3479999999999999999999999999999999999764 5789998864 467999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcccccccc----CccCCCCCHHHHHHHHHHHH
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVG----TVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg----~~~~rgLSGGQrQRVaIArA 656 (1111)
|+|++.+++. |++||+.++........ .....+.++++++.+|+.+..++..| ......||||||||++||||
T Consensus 520 v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 520 VPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred ECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 9999988876 99999988642110000 00012346788999999876554321 01235699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCc
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGG 720 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG 720 (1111)
|+++|++|||||||+|||+.++..+.+.+++ .|+|+|+++|+++. .+.+|++++|+.+|
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~--~~~~d~il~l~~~g 655 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSL--WKYHEYLLYMDGRG 655 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHH--HHhCCEEEEEeCCC
Confidence 9999999999999999999999999998876 38999999999874 47899999997544
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-32 Score=337.78 Aligned_cols=208 Identities=23% Similarity=0.335 Sum_probs=164.0
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 581 (1111)
|+++||+++| +.+.+|+||||+|++|+++||+||||||||||||+|+|... +++|+|.++|.. .|||+
T Consensus 2 i~i~nls~~~--g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~--------~i~~~ 69 (638)
T PRK10636 2 IVFSSLQIRR--GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW--------QLAWV 69 (638)
T ss_pred EEEEEEEEEe--CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC--------EEEEE
Confidence 6789999999 45679999999999999999999999999999999999764 689999998842 38888
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhh------------------c---cc---cchHHHHHHHHHHHHHHcCCC-cccccccc
Q 001270 582 PQDDIVHGNLTVEENLWFHARCR------------------L---SA---HLAKADKVLVIERVIDTLGLQ-TVRDSLVG 636 (1111)
Q Consensus 582 ~Qd~~l~~~LTV~EnL~f~a~~~------------------~---~~---~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg 636 (1111)
+|+...+ ..|+.+++.-..... . .. .....+...+++++++.+|+. +..++.++
T Consensus 70 ~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 148 (638)
T PRK10636 70 NQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS 148 (638)
T ss_pred ecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh
Confidence 8864333 246655543210000 0 00 000012234678899999997 46788777
Q ss_pred CccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEE
Q 001270 637 TVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLL 716 (1111)
Q Consensus 637 ~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL 716 (1111)
+ |||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++ +.|||+||||+.. +.+.+|++++|
T Consensus 149 ~-----LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~-l~~~~d~i~~L 219 (638)
T PRK10636 149 D-----FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDF-LDPIVDKIIHI 219 (638)
T ss_pred h-----cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHH-HHHhcCEEEEE
Confidence 6 9999999999999999999999999999999999999999998875 5699999999875 55789999999
Q ss_pred eCCcEEEEecCHhhH
Q 001270 717 AKGGLTVYHGSVKKV 731 (1111)
Q Consensus 717 ~~GG~iv~~G~~~~l 731 (1111)
.+|..+.|.|+.+..
T Consensus 220 ~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 220 EQQSLFEYTGNYSSF 234 (638)
T ss_pred eCCEEEEecCCHHHH
Confidence 876544578887654
No 344
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=292.86 Aligned_cols=214 Identities=28% Similarity=0.400 Sum_probs=172.4
Q ss_pred EEEeEEEEEcC---CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc---cccc
Q 001270 503 SFKDLTLTLKG---KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH---SYKK 576 (1111)
Q Consensus 503 ~~~nLs~~y~~---~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~---~~r~ 576 (1111)
++.|+.+.+.. ..+++|+++|++|.+|+++.|+|.||||||||+|+|+|.+. +++|+|.|+|.+++.. ....
T Consensus 3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhh
Confidence 34555655532 24689999999999999999999999999999999999664 6899999999987532 2335
Q ss_pred cEEEEccCCC--CCCCCCHHHHHHHHHHhhccccchH---HHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHH
Q 001270 577 IIGFVPQDDI--VHGNLTVEENLWFHARCRLSAHLAK---ADKVLVIERVIDTL--GLQTVRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 577 ~IgyV~Qd~~--l~~~LTV~EnL~f~a~~~~~~~~~~---~~~~~~v~~vL~~L--GL~~~~d~~vg~~~~rgLSGGQrQ 649 (1111)
.++-|||||. ..+.|||+||+.++...-...++.. ..+.+...+-++.+ ||++..++++|- |||||||
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-----LSGGQRQ 155 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQ 155 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-----ccchHHH
Confidence 6899999974 5889999999998764311112221 12223344455554 678888888886 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEe
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYH 725 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~ 725 (1111)
-|++++|.++.|+||+|||-|++|||.++..|++.-.++.++ +.|.+||||+++.+ .++.+|.|+|++ |+||.+
T Consensus 156 alsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~A-l~yG~RlImLh~-G~IvlD 230 (263)
T COG1101 156 ALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDA-LDYGNRLIMLHS-GKIVLD 230 (263)
T ss_pred HHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHH-HhhCCeEEEEeC-CeEEEE
Confidence 999999999999999999999999999999999999998754 78999999999876 489999999976 577764
No 345
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.7e-32 Score=361.77 Aligned_cols=205 Identities=26% Similarity=0.434 Sum_probs=168.2
Q ss_pred EEEEEeEEEEEcCC-cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 501 EVSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~-~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
.|+++|++|+|+.. ++.+|+|+||+|++||.++|+||||||||||+++|+|.+. +.+|.+. .+++.|+
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~G~i~---------~~~~~Ia 682 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS--HAETSSV---------VIRGSVA 682 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc--ccCCCEE---------EecCcEE
Confidence 58999999999642 4679999999999999999999999999999999999765 5667652 3567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHHHHH
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-------TVRDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-------~~~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
||+|++.++. .||+|||.|+... .+ ++.+++++..+|. +-.++.+|+ .+..||||||||++
T Consensus 683 yv~Q~p~Lf~-gTIreNI~fg~~~------~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe-~G~~LSGGQkQRIa 750 (1495)
T PLN03232 683 YVPQVSWIFN-ATVRENILFGSDF------ES----ERYWRAIDVTALQHDLDLLPGRDLTEIGE-RGVNISGGQKQRVS 750 (1495)
T ss_pred EEcCcccccc-ccHHHHhhcCCcc------CH----HHHHHHHHHhCCHHHHHhCCCCCCceecC-CCcccCHHHHHHHH
Confidence 9999999995 5999999997531 11 1244455555543 334677876 34579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRA-LRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~-L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
||||++++|+|+|||||||+||+.++..+++. ++.+ .+|+|+|++||+++. .+.+|+|++|++ |++++.|+.+++
T Consensus 751 LARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~--l~~aD~Ii~L~~-G~i~~~Gt~~eL 826 (1495)
T PLN03232 751 MARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHF--LPLMDRIILVSE-GMIKEEGTFAEL 826 (1495)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhh--HHhCCEEEEEeC-CEEEEecCHHHH
Confidence 99999999999999999999999999988765 4443 468999999999874 478999999986 588999999887
Q ss_pred H
Q 001270 732 E 732 (1111)
Q Consensus 732 ~ 732 (1111)
.
T Consensus 827 ~ 827 (1495)
T PLN03232 827 S 827 (1495)
T ss_pred H
Confidence 5
No 346
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.7e-32 Score=276.18 Aligned_cols=143 Identities=32% Similarity=0.521 Sum_probs=130.0
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 581 (1111)
|+++|+++.|+ +..+|+++||++++||+++|+||||||||||+++|+|+.. +.+|+|.++|+ +.++|+
T Consensus 1 l~~~~l~~~~~--~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~--------~~i~~~ 68 (144)
T cd03221 1 IELENLSKTYG--GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST--------VKIGYF 68 (144)
T ss_pred CEEEEEEEEEC--CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe--------EEEEEE
Confidence 46889999994 3479999999999999999999999999999999999765 68999999984 469999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 001270 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEP 661 (1111)
Q Consensus 582 ~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P 661 (1111)
+| ||+||+||++|||||+.+|
T Consensus 69 ~~-----------------------------------------------------------lS~G~~~rv~laral~~~p 89 (144)
T cd03221 69 EQ-----------------------------------------------------------LSGGEKMRLALAKLLLENP 89 (144)
T ss_pred cc-----------------------------------------------------------CCHHHHHHHHHHHHHhcCC
Confidence 98 7999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 662 SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 662 ~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
+++||||||+|||+.++..+.+.|+++ +.|||++||+++. +.+.+|++++|.+|
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~-~~~~~d~v~~l~~g 143 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYF-LDQVATKIIELEDG 143 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHH-HHHhCCEEEEEeCC
Confidence 999999999999999999999999876 4799999999875 45789999999875
No 347
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.3e-32 Score=361.09 Aligned_cols=204 Identities=25% Similarity=0.437 Sum_probs=169.1
Q ss_pred EEEEEeEEEEEcCC-cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCce-eEEEECCeeCCcccccccE
Q 001270 501 EVSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKAT-GLILINGKNEPIHSYKKII 578 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~-~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~s-G~I~inG~~~~~~~~r~~I 578 (1111)
.|+++|++|+|+.+ ++.+|+|+|++|++||.++|+||||||||||+++|+|.+. +.+ |+|.+ ++.|
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l----------~~~I 681 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI----------RGTV 681 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE----------cCeE
Confidence 58999999999642 3679999999999999999999999999999999999765 578 89974 4579
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHHHH
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-------VRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-------~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
+||+|++.++. .||+|||.|+... . +++.+++++..+|.+ -.++.+|+ .+..|||||||||
T Consensus 682 ayv~Q~p~Lfn-gTIreNI~fg~~~------d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe-~G~~LSGGQKQRI 749 (1622)
T PLN03130 682 AYVPQVSWIFN-ATVRDNILFGSPF------D----PERYERAIDVTALQHDLDLLPGGDLTEIGE-RGVNISGGQKQRV 749 (1622)
T ss_pred EEEcCccccCC-CCHHHHHhCCCcc------c----HHHHHHHHHHhCcHHHHHhCCCcccccccC-CCCCCCHHHHHHH
Confidence 99999999985 5999999997531 1 123455566555533 34667776 3456999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLR-ALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~-~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
+|||||+.+|+|+|||||||+||+.+.+.+++ .++.+. +|+|+|++||+++. ...+|+|++|++ |++++.|+.++
T Consensus 750 aLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~--l~~aD~Ii~L~~-G~i~e~Gt~~e 825 (1622)
T PLN03130 750 SMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHF--LSQVDRIILVHE-GMIKEEGTYEE 825 (1622)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhH--HHhCCEEEEEeC-CEEEEeCCHHH
Confidence 99999999999999999999999999998875 455443 58999999999864 478999999986 58899999988
Q ss_pred HH
Q 001270 731 VE 732 (1111)
Q Consensus 731 l~ 732 (1111)
+.
T Consensus 826 L~ 827 (1622)
T PLN03130 826 LS 827 (1622)
T ss_pred HH
Confidence 75
No 348
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.6e-32 Score=335.29 Aligned_cols=206 Identities=23% Similarity=0.377 Sum_probs=165.8
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||++.|++ .+.+|+||||+|++|++++|+|||||||||||++|+|+.. |++|+|.+++. ..|||
T Consensus 508 ~L~~~~ls~~y~~-~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~--------~~igy 576 (718)
T PLN03073 508 IISFSDASFGYPG-GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK--------VRMAV 576 (718)
T ss_pred eEEEEeeEEEeCC-CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--------eeEEE
Confidence 5899999999943 3469999999999999999999999999999999999765 68899998752 46999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
++|++ ...+++.+|..+......+ ... ...++++++.+|+.+ ..++.+++ |||||||||+|||+|+.
T Consensus 577 v~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~~~-----LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 577 FSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPMYT-----LSGGQKSRVAFAKITFK 644 (718)
T ss_pred Eeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCccc-----cCHHHHHHHHHHHHHhc
Confidence 99985 2455676665432211111 111 234678999999974 56666655 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEE-EecCHhhHHHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTV-YHGSVKKVEEY 734 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv-~~G~~~~l~~~ 734 (1111)
+|++|||||||+|||+.++..+++.|++. +| |||+||||+.. +...+|++++|.+| +++ +.|+.++..++
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~~-i~~~~drv~~l~~G-~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEHL-ISGSVDELWVVSEG-KVTPFHGTFHDYKKT 715 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHHH-HHHhCCEEEEEECC-EEEEeCCCHHHHHHH
Confidence 99999999999999999999998888764 34 99999999875 55789999999875 565 78988776554
No 349
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.8e-32 Score=331.87 Aligned_cols=208 Identities=26% Similarity=0.352 Sum_probs=161.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||+++|+ .+.+|+||||+|++|+++||+|||||||||||++|+|+.. +++|+|.++|.. .++|
T Consensus 3 ~l~i~~ls~~~~--~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~--------~~~~ 70 (635)
T PRK11147 3 LISIHGAWLSFS--DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL--------IVAR 70 (635)
T ss_pred EEEEeeEEEEeC--CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC--------EEEE
Confidence 488999999994 4679999999999999999999999999999999999764 688999998731 2677
Q ss_pred EccCCCCCCCCCHHHHHHHHH------------------------------Hhhcc-ccchHHHHHHHHHHHHHHcCCCc
Q 001270 581 VPQDDIVHGNLTVEENLWFHA------------------------------RCRLS-AHLAKADKVLVIERVIDTLGLQT 629 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a------------------------------~~~~~-~~~~~~~~~~~v~~vL~~LGL~~ 629 (1111)
++|++......+|.+++..+. ..... ......+...+++++++.+|+..
T Consensus 71 l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 150 (635)
T PRK11147 71 LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP 150 (635)
T ss_pred eccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC
Confidence 777653333346666543111 00000 00000112346788999999963
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh
Q 001270 630 VRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRM 709 (1111)
Q Consensus 630 ~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~ 709 (1111)
++.+++ |||||||||+|||+|+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||+.. +.+.
T Consensus 151 --~~~~~~-----LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~~-l~~~ 219 (635)
T PRK11147 151 --DAALSS-----LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRSF-IRNM 219 (635)
T ss_pred --CCchhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHHH-HHHh
Confidence 666655 9999999999999999999999999999999999999999999886 3599999999875 5578
Q ss_pred cCeEEEEeCCcEEEEecCHhhH
Q 001270 710 FDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 710 ~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+|++++|.+|..+.|.|+.++.
T Consensus 220 ~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 220 ATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred cCeEEEEECCEEEEecCCHHHH
Confidence 9999999876433467887654
No 350
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.2e-32 Score=283.45 Aligned_cols=156 Identities=25% Similarity=0.331 Sum_probs=132.3
Q ss_pred CCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCC
Q 001270 513 GKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLT 592 (1111)
Q Consensus 513 ~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LT 592 (1111)
+..+.+|+|+||+|++|++++|+||||||||||||+|.+ .+|+|.++|... ...++.++|++|
T Consensus 5 ~~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~--~~~~~~~~~~~q--------- 67 (176)
T cd03238 5 GANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP--KFSRNKLIFIDQ--------- 67 (176)
T ss_pred ceeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc--ccccccEEEEhH---------
Confidence 345679999999999999999999999999999999964 479999988632 112345888887
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCC
Q 001270 593 VEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV-RDSLVGTVEKRGISGGQRKRVHVGLEMVME--PSLLLLDEP 669 (1111)
Q Consensus 593 V~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~rgLSGGQrQRVaIArALl~~--P~lLLLDEP 669 (1111)
.++++.+||... .++.+. .||||||||++|||||+.+ |++||||||
T Consensus 68 --------------------------~~~l~~~~L~~~~~~~~~~-----~LSgGq~qrl~laral~~~~~p~llLlDEP 116 (176)
T cd03238 68 --------------------------LQFLIDVGLGYLTLGQKLS-----TLSGGELQRVKLASELFSEPPGTLFILDEP 116 (176)
T ss_pred --------------------------HHHHHHcCCCccccCCCcC-----cCCHHHHHHHHHHHHHhhCCCCCEEEEeCC
Confidence 135677888653 566554 4999999999999999999 999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeC
Q 001270 670 TSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAK 718 (1111)
Q Consensus 670 TSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~ 718 (1111)
|++||+.++..+.+.|+++.++|+|||++||+++. + +.+|++++|.+
T Consensus 117 t~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~ 163 (176)
T cd03238 117 STGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGP 163 (176)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECC
Confidence 99999999999999999987779999999999875 3 68999999965
No 351
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.6e-33 Score=273.79 Aligned_cols=193 Identities=30% Similarity=0.412 Sum_probs=165.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC-CceeEEEECCeeCCc-ccccccE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC-KATGLILINGKNEPI-HSYKKII 578 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~~~-~~~r~~I 578 (1111)
.+.++||+.+. ++..+|.+||++|.+|||+.|||||||||||||..+.|.+.+. ..+|++.+|+++++. ...+|+|
T Consensus 2 ~l~l~nvsl~l--~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~ 79 (213)
T COG4136 2 MLCLKNVSLRL--PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI 79 (213)
T ss_pred ceeeeeeeecC--CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence 36789999776 5568999999999999999999999999999999999976432 468999999998753 3567899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
|++|||+.+||+++|.+||.|+... .+....++..+...+++.||....++.+.. ||||||-||++-|+|+
T Consensus 80 GiLFQD~lLFphlsVg~Nl~fAlp~----~~KG~aRr~~a~aAL~~~gL~g~f~~dP~t-----lSGGQrARvaL~R~Ll 150 (213)
T COG4136 80 GILFQDALLFPHLSVGQNLLFALPA----TLKGNARRNAANAALERSGLDGAFHQDPAT-----LSGGQRARVALLRALL 150 (213)
T ss_pred eeeecccccccccccccceEEecCc----ccccHHHHhhHHHHHHHhccchhhhcChhh-----cCcchHHHHHHHHHHH
Confidence 9999999999999999999997643 333345556688999999999988887655 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccH
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREA-LEGVNICLVVHQPSY 704 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la-~~G~TVIivtHq~~~ 704 (1111)
..|+.++||||+|.||..-+.++.+..-... ..|..+|+||||...
T Consensus 151 a~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 151 AQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred hCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 9999999999999999999999988765544 459999999999763
No 352
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.8e-32 Score=281.76 Aligned_cols=146 Identities=27% Similarity=0.350 Sum_probs=129.8
Q ss_pred EeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccC
Q 001270 505 KDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQD 584 (1111)
Q Consensus 505 ~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd 584 (1111)
.||++.| +++.+++++ ++|++||+++|+||||||||||+|+|+|+.. +++|+|.++|.+ ++|++|+
T Consensus 4 ~~l~~~~--~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~---------i~~~~q~ 69 (177)
T cd03222 4 PDCVKRY--GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT---------PVYKPQY 69 (177)
T ss_pred CCeEEEE--CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE---------EEEEccc
Confidence 5788999 456789985 9999999999999999999999999999765 688999999853 7898885
Q ss_pred CCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001270 585 DIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLL 664 (1111)
Q Consensus 585 ~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lL 664 (1111)
.. ||||||||++|||+|+.+|+++
T Consensus 70 ~~--------------------------------------------------------LSgGq~qrv~laral~~~p~ll 93 (177)
T cd03222 70 ID--------------------------------------------------------LSGGELQRVAIAAALLRNATFY 93 (177)
T ss_pred CC--------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 42 8999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCccHHHHHhcCeEEEEeCCcE
Q 001270 665 LLDEPTSGLDSASSQLLLRALRREALEG-VNICLVVHQPSYALFRMFDDLVLLAKGGL 721 (1111)
Q Consensus 665 LLDEPTSGLD~~s~~~Il~~L~~la~~G-~TVIivtHq~~~~i~~~~D~vilL~~GG~ 721 (1111)
||||||++||+.++..+.+.|+++++++ .|||++||+++. +.+.+|++++|.++..
T Consensus 94 lLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 94 LFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV-LDYLSDRIHVFEGEPG 150 (177)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH-HHHhCCEEEEEcCCCc
Confidence 9999999999999999999999987765 999999999875 4568999999987543
No 353
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.98 E-value=2.6e-32 Score=344.17 Aligned_cols=224 Identities=29% Similarity=0.465 Sum_probs=201.4
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----cccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYK 575 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r 575 (1111)
-.+..+||++.|+...+ +++++|+.|++||+.|++|+|||||||++|+|.|... +++|++.++|.++.. .+.+
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i~~~~~~~~~~ 639 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDITVSTDFQQVR 639 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCccccccchhhhh
Confidence 35778999999965444 9999999999999999999999999999999999664 689999999987632 2367
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
+.+||+||++.+++.+|.+|++.+.++++ +++..+..+.++.+++.+||.+.+++.++. +|||+|+|+++|.
T Consensus 640 ~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~~-----ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 640 KQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVRT-----YSGGNKRRLSFAI 711 (885)
T ss_pred hhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchhh-----CCCcchhhHHHHH
Confidence 88999999999999999999999999876 455556666799999999999999999876 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYF 735 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f 735 (1111)
||+.+|++++|||||+|+||.+++.++++++++.++|+.||++||.+++. ..+|||+.+|.+| ++...|++++++..|
T Consensus 712 alig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~-EaLCtR~aImv~G-~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 712 ALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEA-EALCTRTAIMVIG-QLRCIGSPQELKSRY 789 (885)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHHhhhhheeecC-eeEEecChHHHHhhc
Confidence 99999999999999999999999999999999998888999999999864 6899999999885 788999999999877
Q ss_pred H
Q 001270 736 A 736 (1111)
Q Consensus 736 ~ 736 (1111)
.
T Consensus 790 G 790 (885)
T KOG0059|consen 790 G 790 (885)
T ss_pred C
Confidence 4
No 354
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=3.8e-31 Score=282.42 Aligned_cols=203 Identities=25% Similarity=0.311 Sum_probs=178.2
Q ss_pred cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 001270 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVE 594 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 594 (1111)
...+|+||||++++||.+||||+||||||||||+|+|.++ |++|+|.++|+-...-. + ...+.|.+|.+
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt~G~v~v~G~v~~li~----l-----g~Gf~pelTGr 107 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PTSGKVKVTGKVAPLIE----L-----GAGFDPELTGR 107 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CCCceEEEcceEehhhh----c-----ccCCCcccchH
Confidence 3579999999999999999999999999999999999775 68999999997432111 1 12455789999
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 001270 595 ENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLD 674 (1111)
Q Consensus 595 EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD 674 (1111)
||+.+-..+. ++.+.+.+++++++++.-+|.+..|.++.+ +|.||+-|+++|.|...+|+|||+||-.+-.|
T Consensus 108 eNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pvkt-----YSSGM~aRLaFsia~~~~pdILllDEvlavGD 179 (249)
T COG1134 108 ENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVKT-----YSSGMYARLAFSVATHVEPDILLLDEVLAVGD 179 (249)
T ss_pred HHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchhh-----ccHHHHHHHHHhhhhhcCCCEEEEehhhhcCC
Confidence 9999876543 466778888899999999999999999876 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHHHhC
Q 001270 675 SASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYFAGL 738 (1111)
Q Consensus 675 ~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f~~~ 738 (1111)
+.-++.-.+.+.++.++++|||+|+||++. +.++||++++|++ |++.+.|.++++.+++.+.
T Consensus 180 ~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~-I~~~Cd~~i~l~~-G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 180 AAFQEKCLERLNELVEKNKTIVLVSHDLGA-IKQYCDRAIWLEH-GQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECCHHH-HHHhcCeeEEEeC-CEEEEcCCHHHHHHHHHHh
Confidence 999999999999998888999999999975 6799999999987 5899999999998887653
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.98 E-value=2.3e-31 Score=351.50 Aligned_cols=209 Identities=24% Similarity=0.379 Sum_probs=167.4
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++|+++.|+...+.+|+|+||+|++||+++|+|||||||||||++|+|.+. +.+|+|.++| .|||
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g----------~i~y 703 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG----------SVAY 703 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC----------EEEE
Confidence 589999999996544679999999999999999999999999999999999765 5889999987 4999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHH--HHHHHHHcCC-CccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLV--IERVIDTLGL-QTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~--v~~vL~~LGL-~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
|+|++.++ +.||+|||.|+... ..+...+. +..+.+.+++ .+-.++.+|+ .+..|||||||||+|||||
T Consensus 704 v~Q~~~l~-~~Ti~eNI~~g~~~------~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 704 VPQQAWIQ-NDSLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred EcCCcccc-CCcHHHHhhcCCcc------CHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHH
Confidence 99999887 57999999987431 11111111 1111222222 1223455665 3567999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRRE--ALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~l--a~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+.+|+|+|||||||+||+.++..+++.+.+. ..+|+|+|++||+++. ...+|++++|++ |++++.|+.+++.
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~-G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSG-GKISEMGSYQELL 849 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecC-CeEEeeCCHHHHH
Confidence 9999999999999999999999999998753 2358999999999875 366999999986 5889999998875
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.1e-31 Score=268.38 Aligned_cols=152 Identities=41% Similarity=0.684 Sum_probs=135.6
Q ss_pred EEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccccEEE
Q 001270 504 FKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKIIGF 580 (1111)
Q Consensus 504 ~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~Igy 580 (1111)
++|+++.|. .+.+|+++|++|++|++++|+|+||||||||+++|+|++. +.+|+|+++|.+... ..+++.++|
T Consensus 2 ~~~~~~~~~--~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 2 IENLSFRYG--GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred eEEEEEEeC--CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHHHhceEE
Confidence 578999994 3479999999999999999999999999999999999765 578999999987532 234577999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
++| |||||+||++||++|+.+
T Consensus 78 ~~q-----------------------------------------------------------lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 78 VPQ-----------------------------------------------------------LSGGQRQRVALARALLLN 98 (157)
T ss_pred Eee-----------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 998 899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
|++++|||||+|||..++..+.+.|+++.+.++|+|++||+++. +...+|++++|.+|
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~~d~i~~l~~g 156 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL-AELAADRVIVLKDG 156 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEeCc
Confidence 99999999999999999999999999987768999999999875 44667999999864
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1.1e-31 Score=325.46 Aligned_cols=191 Identities=25% Similarity=0.299 Sum_probs=158.0
Q ss_pred EeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEE-----------ECCeeCCcc-
Q 001270 505 KDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLIL-----------INGKNEPIH- 572 (1111)
Q Consensus 505 ~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~-----------inG~~~~~~- 572 (1111)
++++++|+. +..+|++|+ .+++||++||+||||||||||||+|+|++. |++|+|. ++|+++...
T Consensus 77 ~~~~~~yg~-~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l~~~~ 152 (590)
T PRK13409 77 EEPVHRYGV-NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTELQNYF 152 (590)
T ss_pred cCceEEecC-CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHHHHHH
Confidence 457889952 356999999 999999999999999999999999999765 6789997 899765210
Q ss_pred ----cccccEEEEccCCCCCCC---CCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 001270 573 ----SYKKIIGFVPQDDIVHGN---LTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISG 645 (1111)
Q Consensus 573 ----~~r~~IgyV~Qd~~l~~~---LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSG 645 (1111)
..+..+++++|.....+. .||+|++.+. +....++++++.+||.+..++.+++ |||
T Consensus 153 ~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~-----LSg 215 (590)
T PRK13409 153 KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDISE-----LSG 215 (590)
T ss_pred HHHhccCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChhh-----CCH
Confidence 112346666665443332 3999998631 1123578899999999888888876 999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeC
Q 001270 646 GQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAK 718 (1111)
Q Consensus 646 GQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~ 718 (1111)
||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|+++. +..++|++++|.+
T Consensus 216 Ge~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~-l~~~~D~v~vl~~ 286 (590)
T PRK13409 216 GELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAV-LDYLADNVHIAYG 286 (590)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH-HHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999988 9999999999975 5688999999964
No 358
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=2.2e-31 Score=271.34 Aligned_cols=220 Identities=23% Similarity=0.341 Sum_probs=183.5
Q ss_pred EEEEeEEEEEcC-------CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc--
Q 001270 502 VSFKDLTLTLKG-------KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH-- 572 (1111)
Q Consensus 502 L~~~nLs~~y~~-------~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~-- 572 (1111)
++++||++++.+ ....+++.|||++++|+.+||+|.||||||||.|+|+|... |++|+|++||+++.-.
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGDY 82 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccch
Confidence 567888887743 23468999999999999999999999999999999999775 6899999999886322
Q ss_pred -cccccEEEEccCCC--CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHH
Q 001270 573 -SYKKIIGFVPQDDI--VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 573 -~~r~~IgyV~Qd~~--l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQr 648 (1111)
...++|-++|||+. +.|.+.+-.-|....+ +..++...++.+++.+.+..+||- +.++-++. -||-|||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~--l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~-----~la~~QK 155 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLR--LNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH-----MLAPGQK 155 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhh--hcccCChHHHHHHHHHHHHHhccCccccccchh-----hcCchhH
Confidence 23468999999975 5566667666665544 444566777788899999999984 44555554 4999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
|||++||||+.+|+|+|.||...+||...+.++++++.++.++ |.+-|.|+.++.. +..+.|.+++|++ |.+++.|+
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~-iKHi~D~viVM~E-G~vvE~G~ 233 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGM-IKHISDQVLVMHE-GEVVERGS 233 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhH-hhhhcccEEEEec-CceeecCC
Confidence 9999999999999999999999999999999999999998754 9999999999874 6789999999987 57899999
Q ss_pred HhhHH
Q 001270 728 VKKVE 732 (1111)
Q Consensus 728 ~~~l~ 732 (1111)
+.++.
T Consensus 234 t~~v~ 238 (267)
T COG4167 234 TADVL 238 (267)
T ss_pred hhhhh
Confidence 98774
No 359
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=7.2e-31 Score=312.37 Aligned_cols=210 Identities=29% Similarity=0.409 Sum_probs=175.0
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
..|+++||++.| +.+.+|+|+|++|.+|+.+||||+||+|||||||+|+|... +++|+|...+. -+||
T Consensus 2 ~~i~~~~ls~~~--g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~--------~~v~ 69 (530)
T COG0488 2 SMITLENLSLAY--GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG--------LRVG 69 (530)
T ss_pred ceEEEeeeEEee--CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC--------ceEE
Confidence 358899999999 66789999999999999999999999999999999999764 68899987642 2599
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhcc--ccchH-------------------------HHHHHHHHHHHHHcCCCcccc
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLS--AHLAK-------------------------ADKVLVIERVIDTLGLQTVRD 632 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~--~~~~~-------------------------~~~~~~v~~vL~~LGL~~~~d 632 (1111)
|++|++.+.+..||.+.+.-+...... ..+.. .+.+.+++.++..||+.+. +
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~ 148 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D 148 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c
Confidence 999999999989999998765421100 00000 0112467788888898877 7
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCe
Q 001270 633 SLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDD 712 (1111)
Q Consensus 633 ~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~ 712 (1111)
+.+++ ||||||.||+||++|+.+|+||||||||++||..+..-+-+.|++. +| |||+||||-.+ +-+.+++
T Consensus 149 ~~~~~-----LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~F-Ld~V~t~ 219 (530)
T COG0488 149 RPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYF-LDNVATH 219 (530)
T ss_pred Cchhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHH-HHHHhhh
Confidence 77776 9999999999999999999999999999999999999999999853 57 99999999765 6789999
Q ss_pred EEEEeCCcEEEEecCHhhH
Q 001270 713 LVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 713 vilL~~GG~iv~~G~~~~l 731 (1111)
|+-++.|....|.|+.+..
T Consensus 220 I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 220 ILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred eEEecCCceeEecCCHHHH
Confidence 9999998888999987653
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=9.3e-31 Score=344.89 Aligned_cols=196 Identities=23% Similarity=0.388 Sum_probs=154.7
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEE 595 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 595 (1111)
+.+|+||||+|++|++++|+|||||||||||++|+|+.. +.+|+|.++| .|+||+|++.+++ .||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 458999999999999999999999999999999999765 6889999988 3999999999986 49999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001270 596 NLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDS 675 (1111)
Q Consensus 596 nL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~ 675 (1111)
||.|+.... .....+..+...+++.++.+.. ..++.+|+ .+..|||||||||+|||||+.+|+|+||||||+|||+
T Consensus 506 NI~~g~~~~-~~~~~~~~~~~~L~~~l~~l~~--g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 506 NIIFGLSYD-EYRYTSVIKACQLEEDIALFPE--KDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred HHHhccccc-hHHHHHHHHHHhHHHHHHhccc--cccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 999875311 0000011111112233333322 12345554 3567999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 676 ASSQLLLRA-LRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 676 ~s~~~Il~~-L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
.++..+++. ++.+. +|+|||++||+++. ...+|++++|++ |+++..|+.+++.
T Consensus 582 ~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~-g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 582 VTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHE-GVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 999999985 56654 58999999999975 356999999986 5789999998875
No 361
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=2.9e-30 Score=340.73 Aligned_cols=197 Identities=30% Similarity=0.422 Sum_probs=154.4
Q ss_pred CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCH
Q 001270 514 KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTV 593 (1111)
Q Consensus 514 ~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV 593 (1111)
+.+.+|+||||+|++|++++|+|||||||||||++|+|++. +.+|+|.++ +.||||+|++.++ +.||
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~----------~~i~yv~Q~~~l~-~~Tv 737 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE----------RSIAYVPQQAWIM-NATV 737 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC----------CeEEEEeCCCccC-CCcH
Confidence 34579999999999999999999999999999999999765 578999763 4699999999887 5799
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001270 594 EENLWFHARCRLSAHLAKADKVLVIERVIDTL--GLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671 (1111)
Q Consensus 594 ~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~L--GL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTS 671 (1111)
+|||.|+.... .....+..+...+++.++.+ |+....+.. +..|||||||||+|||||+.+|+||||||||+
T Consensus 738 ~enI~~~~~~~-~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~-----g~~LSGGQkqRvaLARAl~~~p~illLDEP~s 811 (1560)
T PTZ00243 738 RGNILFFDEED-AARLADAVRVSQLEADLAQLGGGLETEIGEK-----GVNLSGGQKARVSLARAVYANRDVYLLDDPLS 811 (1560)
T ss_pred HHHHHcCChhh-HHHHHHHHHHhhhHHHHHHhhccchHHhcCC-----CCCCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 99999864211 00111111112344555655 555443333 34599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 672 GLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 672 GLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+||+.++..+++.+.....+|+|+|++||+++. ...+|++++|++ |++++.|+.+++.
T Consensus 812 aLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~-G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 812 ALDAHVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGD-GRVEFSGSSADFM 869 (1560)
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEEC-CEEEEecCHHHHH
Confidence 999999999887543223358999999999875 368999999986 5789999988764
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.1e-30 Score=322.15 Aligned_cols=221 Identities=23% Similarity=0.293 Sum_probs=159.7
Q ss_pred ceEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC-CCCceeEEEECCeeC-----Cc-
Q 001270 499 LIEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAI-ACKATGLILINGKNE-----PI- 571 (1111)
Q Consensus 499 ~i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~-~~~~sG~I~inG~~~-----~~- 571 (1111)
...|+++|++++|+ .+.+|+|+||+|.+|+++||+|+|||||||||++|+|+.. ..|.+|+|.+.++.. +.
T Consensus 175 ~~~I~i~nls~~y~--~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 175 IKDIHMENFSISVG--GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred ceeEEEceEEEEeC--CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 34689999999994 4579999999999999999999999999999999999642 135678887544321 10
Q ss_pred -----------ccccccEEEEccCCCCCCCCCHHHHHHHHHHh---------hcc------ccchHHHHHHHHHHHHHHc
Q 001270 572 -----------HSYKKIIGFVPQDDIVHGNLTVEENLWFHARC---------RLS------AHLAKADKVLVIERVIDTL 625 (1111)
Q Consensus 572 -----------~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~---------~~~------~~~~~~~~~~~v~~vL~~L 625 (1111)
..+++.+++++|++.+... ++.++....... +.. ..........++.++++.+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC
Confidence 0012346777776543221 111111000000 000 0000112234577888889
Q ss_pred CCC-ccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccH
Q 001270 626 GLQ-TVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSY 704 (1111)
Q Consensus 626 GL~-~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~ 704 (1111)
|+. +..++.+++ |||||||||+||++|+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||...
T Consensus 332 gl~~~~~~~~~~~-----LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~ 403 (718)
T PLN03073 332 SFTPEMQVKATKT-----FSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREF 403 (718)
T ss_pred CCChHHHhCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHH
Confidence 996 455666665 9999999999999999999999999999999999999999999886 6899999999875
Q ss_pred HHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 705 ALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 705 ~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+...+|++++|.+|....|.|+.++.
T Consensus 404 -l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 404 -LNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred -HHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 55789999999876443578887654
No 363
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=268.48 Aligned_cols=188 Identities=28% Similarity=0.400 Sum_probs=163.0
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~Ig 579 (1111)
++.+||+..- +.+.++.++||++.+||++-|.||||||||||||+|+|+.. |.+|+|+++|..++. +.+.+.+-
T Consensus 3 L~a~~L~~~R--~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCER--GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRESYHQALL 78 (209)
T ss_pred chhhhhhhcc--CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhhHHHHHH
Confidence 4567777655 66789999999999999999999999999999999999876 689999999987643 23557788
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|+--.+.+=+.|||+|||.|....... .....+.+.++.+||....|.+++. ||-||||||+|||-++.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~~-----LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVGQ-----LSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchhh-----cchhHHHHHHHHHHHcC
Confidence 888888888899999999998765432 1123477899999999999999876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSY 704 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~ 704 (1111)
.+++.||||||++||......+-.++..-+.+|-.||.+|||+..
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999888888899999999863
No 364
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=6.7e-30 Score=324.36 Aligned_cols=224 Identities=25% Similarity=0.363 Sum_probs=185.0
Q ss_pred ceEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC---Cccccc
Q 001270 499 LIEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE---PIHSYK 575 (1111)
Q Consensus 499 ~i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~~~~~r 575 (1111)
.-+|+|+|++.+|..+...||+||||+|+|||.+||+|..|||||||+++|-.+.. +.+|+|.|||.++ ..+.+|
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCeecccccHHHHH
Confidence 35799999999998777789999999999999999999999999999999999765 5789999999986 356799
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
++++.+||||.+|.. |||.||.=... +.+..+.++-++....+.++.+ ....|..+.+ ++..+|-||||-|+|||
T Consensus 1214 srlsIIPQdPvLFsG-TvR~NLDPf~e-~sD~~IW~ALe~~~Lk~~v~~~--p~~Ld~~v~e-gG~N~SvGQRQLlCLAR 1288 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLFSG-TVRFNLDPFDE-YSDDEIWEALERCQLKDVVSSL--PGGLDSEVSE-GGENFSVGQRQLLCLAR 1288 (1381)
T ss_pred hcCeeeCCCCceecC-ccccccCcccc-cCHHHHHHHHHHhChHHHHhhC--CcCCCceecC-CCccCChHHHHHHHHHH
Confidence 999999999999965 99999963221 1122233333333444455432 2335666665 56679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
||+++.+||+|||+|+++|+++-..|.++|++. -.+.|||.|.|+++.. --+|||+||++ |+++++|+|.++.+
T Consensus 1289 ALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~-F~dcTVltIAHRl~TV--md~DrVlVld~-G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1289 ALLRKSKILVLDEATASVDPETDALIQKTIREE-FKDCTVLTIAHRLNTV--MDSDRVLVLDA-GRVVEFDSPAELLS 1362 (1381)
T ss_pred HHhccCCEEEEecccccCChHHHHHHHHHHHHH-hcCCeEEEEeeccchh--hhcCeEEEeeC-CeEeecCChHHHHh
Confidence 999999999999999999999999999999984 3589999999999854 46999999987 58999999998863
No 365
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.3e-29 Score=256.70 Aligned_cols=214 Identities=26% Similarity=0.384 Sum_probs=164.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCee---CC-----cc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN---EP-----IH 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~---~~-----~~ 572 (1111)
-+++++|++.|. .....+||||++.|||+++|+|.|||||||||++|++++. |+.|+|.+.-.+ .+ ..
T Consensus 6 LL~V~~lsk~Yg--~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl~~msEa 81 (258)
T COG4107 6 LLSVSGLSKLYG--PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDLYTMSEA 81 (258)
T ss_pred ceeehhhhhhhC--CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhHhhhchH
Confidence 367899999994 4567999999999999999999999999999999999775 688999886532 11 11
Q ss_pred ----cccccEEEEccCCC--CC----CCCCHHHHHH-HHHHhhccccchHHHHHHHHHHHHHHcCCCcc-ccccccCccC
Q 001270 573 ----SYKKIIGFVPQDDI--VH----GNLTVEENLW-FHARCRLSAHLAKADKVLVIERVIDTLGLQTV-RDSLVGTVEK 640 (1111)
Q Consensus 573 ----~~r~~IgyV~Qd~~--l~----~~LTV~EnL~-f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~ 640 (1111)
-+|..-|||.|+|. +- ..-.|-|-++ .+.+. .-...+.+.++++++.++.. .|. .+
T Consensus 82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH-------YG~iR~~a~~WL~~VEI~~~RiDD-----~P 149 (258)
T COG4107 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH-------YGNIRAEAQDWLEEVEIDLDRIDD-----LP 149 (258)
T ss_pred HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhh-------hhhHHHHHHHHHHhcccCcccccC-----cc
Confidence 13456899999973 21 1223334332 22221 11233446788898887642 232 45
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 641 RGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 641 rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
+.+||||+||+.|||-|++.|+++|+||||.|||...+..++++++.+..+ |..+|++|||+..+ .-++|+.++|.+
T Consensus 150 rtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~Va-rLla~rlmvmk~- 227 (258)
T COG4107 150 RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA-RLLADRLMVMKQ- 227 (258)
T ss_pred cccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHH-HHhhhcceeecC-
Confidence 679999999999999999999999999999999999999999999999865 99999999998643 346788888865
Q ss_pred cEEEEecCHhhHH
Q 001270 720 GLTVYHGSVKKVE 732 (1111)
Q Consensus 720 G~iv~~G~~~~l~ 732 (1111)
|++++.|-.+.+.
T Consensus 228 g~vve~GLTDrvL 240 (258)
T COG4107 228 GQVVESGLTDRVL 240 (258)
T ss_pred CCEeccccccccc
Confidence 5789998776654
No 366
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=1.1e-28 Score=266.17 Aligned_cols=193 Identities=22% Similarity=0.287 Sum_probs=134.9
Q ss_pred CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHH-HHHhcCCCCCCceeEEEEC-----------C--eeCCccccc-ccE
Q 001270 514 KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFL-SALAGKAIACKATGLILIN-----------G--KNEPIHSYK-KII 578 (1111)
Q Consensus 514 ~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLL-kiLaGl~~~~~~sG~I~in-----------G--~~~~~~~~r-~~I 578 (1111)
...++|++|||+|++||+++|+|+||||||||+ ..|.. .|++.+. | ........+ ...
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 456799999999999999999999999999996 44431 1222110 0 000001111 234
Q ss_pred EEEccCCC--CCCCCCHH---HHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHH
Q 001270 579 GFVPQDDI--VHGNLTVE---ENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 579 gyV~Qd~~--l~~~LTV~---EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
++..|++. +.+..+|. +...+...+. .......+ .+.++.+||.+ ..++.+.+ |||||||||+
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~-----LSgG~~qrv~ 147 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSAPT-----LSGGEAQRIR 147 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCccCc-----CCHHHHHHHH
Confidence 45555443 23344544 2222211111 11111222 46789999976 46766654 9999999999
Q ss_pred HHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe-----CCcEEEEe
Q 001270 653 VGLEMVMEP--SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA-----KGGLTVYH 725 (1111)
Q Consensus 653 IArALl~~P--~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~-----~GG~iv~~ 725 (1111)
|||+|+.+| ++|||||||+|||+.++..+.+.|++++++|.|||++||+++. + +.+|++++|. ++|+++++
T Consensus 148 laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~-~-~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 148 LATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT-I-RAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred HHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH-H-HhCCEEEEeCCCccccCCEEEec
Confidence 999999998 5999999999999999999999999998789999999999874 3 6899999993 34688877
Q ss_pred c
Q 001270 726 G 726 (1111)
Q Consensus 726 G 726 (1111)
|
T Consensus 226 g 226 (226)
T cd03270 226 G 226 (226)
T ss_pred C
Confidence 6
No 367
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=4.1e-29 Score=246.67 Aligned_cols=134 Identities=43% Similarity=0.713 Sum_probs=117.5
Q ss_pred EeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccccEEEEccCCCCCCCCCHHH
Q 001270 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKIIGFVPQDDIVHGNLTVEE 595 (1111)
Q Consensus 519 L~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~IgyV~Qd~~l~~~LTV~E 595 (1111)
|+|||++|++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999765 589999999998754 356789999999999999999999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001270 596 NLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671 (1111)
Q Consensus 596 nL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTS 671 (1111)
| ....+++++++.+++.+..++.++. ....|||||||||+||+||+.+|++|||||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 1123468899999998877777754 335699999999999999999999999999996
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=2.1e-27 Score=282.94 Aligned_cols=205 Identities=27% Similarity=0.390 Sum_probs=168.6
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
..++++|+++.|.++ +.+++++||.|.+|+.+||+||||+|||||||+|+|... +.+|+|.+.-. -.||
T Consensus 320 ~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~--------v~ig 388 (530)
T COG0488 320 LVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET--------VKIG 388 (530)
T ss_pred eeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc--------eEEE
Confidence 468999999999543 789999999999999999999999999999999999654 56899987532 3499
Q ss_pred EEccCC-CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 580 FVPQDD-IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 580 yV~Qd~-~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
|..|+. .+.+..|+.|++.-... ... ...+...+..+++.. ...++++. ||||||.||.+|+.+
T Consensus 389 yf~Q~~~~l~~~~t~~d~l~~~~~-----~~~----e~~~r~~L~~f~F~~~~~~~~v~~-----LSGGEk~Rl~La~ll 454 (530)
T COG0488 389 YFDQHRDELDPDKTVLEELSEGFP-----DGD----EQEVRAYLGRFGFTGEDQEKPVGV-----LSGGEKARLLLAKLL 454 (530)
T ss_pred EEEehhhhcCccCcHHHHHHhhCc-----ccc----HHHHHHHHHHcCCChHHHhCchhh-----cCHhHHHHHHHHHHh
Confidence 999986 44577899999875331 111 335788999999964 34666665 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEY 734 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~ 734 (1111)
+.+|.+|||||||+.||..+...+.++|.+. .-|||+||||..+ +-+.+++++++.+ +...+.|..++..+.
T Consensus 455 ~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~F-l~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 455 LQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYF-LDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred ccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHH-HHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 9999999999999999999999999999875 3499999999875 5689999999986 555667887665443
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=5.3e-28 Score=307.20 Aligned_cols=206 Identities=27% Similarity=0.482 Sum_probs=171.6
Q ss_pred eEEEEEeEEEEEcCC-cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccE
Q 001270 500 IEVSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKII 578 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~-~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 578 (1111)
..++++|.+++.... ....|+||||+|++|+.+||+|+-|||||+||.+|.|... ..+|+|.++|. +
T Consensus 517 ~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs----------i 584 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS----------V 584 (1381)
T ss_pred ceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe----------E
Confidence 468899999998652 3448999999999999999999999999999999999664 58999999984 9
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCCCHHHHHHH
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV-------RDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-------~d~~vg~~~~rgLSGGQrQRV 651 (1111)
+||+|.+.++ +-||+|||.|+... .+ ++-+++++...|+.. -.+.+|+ .+-.||||||||+
T Consensus 585 aYv~Q~pWI~-ngTvreNILFG~~~------d~----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE-rGinLSGGQKqRI 652 (1381)
T KOG0054|consen 585 AYVPQQPWIQ-NGTVRENILFGSPY------DE----ERYDKVIKACALKKDLEILPFGDLTEIGE-RGINLSGGQKQRI 652 (1381)
T ss_pred EEeccccHhh-CCcHHHhhhcCccc------cH----HHHHHHHHHccCHhHHhhcCCCCcceecC-CccCCcHhHHHHH
Confidence 9999999988 46999999998652 11 234566666655432 2355665 3446999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
++|||+.++.+|+|||.|.|++|+.....|.+..-+..-+++|+|++||+.+. .+.+|.|++|++ |++...|+.+|+
T Consensus 653 sLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~--L~~ad~Iivl~~-G~I~~~Gty~el 729 (1381)
T KOG0054|consen 653 SLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQF--LPHADQIIVLKD-GKIVESGTYEEL 729 (1381)
T ss_pred HHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhh--hhhCCEEEEecC-CeEecccCHHHH
Confidence 99999999999999999999999999999987654444568999999999764 588999999986 689999999998
Q ss_pred H
Q 001270 732 E 732 (1111)
Q Consensus 732 ~ 732 (1111)
.
T Consensus 730 ~ 730 (1381)
T KOG0054|consen 730 L 730 (1381)
T ss_pred H
Confidence 7
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=6.6e-28 Score=265.33 Aligned_cols=197 Identities=24% Similarity=0.317 Sum_probs=152.2
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHh--------cCCCCCC-----------ceeEEEECCeeCCc--cc-
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALA--------GKAIACK-----------ATGLILINGKNEPI--HS- 573 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLa--------Gl~~~~~-----------~sG~I~inG~~~~~--~~- 573 (1111)
.+-|+|||.+|+.|++++|.|+||||||||++.+. +.....+ ..--|.++..++.. +.
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45699999999999999999999999999998552 1000001 11236666655311 00
Q ss_pred ----------cc----------------ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCC
Q 001270 574 ----------YK----------------KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGL 627 (1111)
Q Consensus 574 ----------~r----------------~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL 627 (1111)
+| ..+.|..++...+..|||.|++.|..... . ..++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~------~---~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP------K---IARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh------h---HHHHHHHHHHcCC
Confidence 01 12566667666667899999999876432 1 2345778999999
Q ss_pred Cc-cccccccCccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 001270 628 QT-VRDSLVGTVEKRGISGGQRKRVHVGLEMVME---PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPS 703 (1111)
Q Consensus 628 ~~-~~d~~vg~~~~rgLSGGQrQRVaIArALl~~---P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~ 703 (1111)
.. ..++.+.+ ||||||||++||++|+.+ |+++||||||+|||+.....+++.|+++.++|.|||+++|+++
T Consensus 159 ~~l~l~~~~~~-----LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQPATT-----LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcCcccc-----CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 87 45666654 999999999999999996 7999999999999999999999999999888999999999987
Q ss_pred HHHHHhcCeEEEEe-----CCcEEEEecCH
Q 001270 704 YALFRMFDDLVLLA-----KGGLTVYHGSV 728 (1111)
Q Consensus 704 ~~i~~~~D~vilL~-----~GG~iv~~G~~ 728 (1111)
. .+.+|+++.|. +||++++.|++
T Consensus 234 ~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 V--IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 4 36799999994 57899999874
No 371
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.3e-28 Score=247.10 Aligned_cols=208 Identities=22% Similarity=0.320 Sum_probs=167.1
Q ss_pred EEEEEeEEEEEc-----CCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCee--CC---
Q 001270 501 EVSFKDLTLTLK-----GKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN--EP--- 570 (1111)
Q Consensus 501 ~L~~~nLs~~y~-----~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~--~~--- 570 (1111)
.|.++||+++|. +-.-++|+||||+++.||++++-|||||||||||++|-|-+ .+++|+|.+.... ++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY--~~d~G~I~v~H~g~~vdl~~ 81 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY--LPDEGQILVRHEGEWVDLVT 81 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc--CCCCceEEEEeCcchhhhhc
Confidence 367788888773 11246899999999999999999999999999999999955 4789999986542 11
Q ss_pred --cc----cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 001270 571 --IH----SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGIS 644 (1111)
Q Consensus 571 --~~----~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLS 644 (1111)
+. -.++.||||.|.-...|.....|-++-.+-. .+++.+....++.+++.+|++.+..=.. .+..+|
T Consensus 82 a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaTFS 154 (235)
T COG4778 82 AEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL----APATFS 154 (235)
T ss_pred cChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC----CCcccC
Confidence 11 1356799999998888888777777654432 3455666667789999999997543222 244699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeC
Q 001270 645 GGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAK 718 (1111)
Q Consensus 645 GGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~ 718 (1111)
|||+|||.|||.++.+-+||+|||||+.||..+++.++++|++-+..|..+|=|-||-+. -...+||++-+..
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeev-re~vadR~~~~~~ 227 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEV-REAVADRLLDVSA 227 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHH-HHHHhhheeeccc
Confidence 999999999999999999999999999999999999999999987789999999999653 3467899888753
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=7.5e-28 Score=254.81 Aligned_cols=168 Identities=17% Similarity=0.240 Sum_probs=132.0
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC-------CceeEEEECCeeCCcccccccEEEEccCCCCCCCCC
Q 001270 520 RCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC-------KATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLT 592 (1111)
Q Consensus 520 ~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~-------~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LT 592 (1111)
+++++++.+| +++|+||||||||||+++|+|+..+. +..|++.++|++......++.||||||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999875321 22356878887653333457899999998766
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 001270 593 VEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV----MEPSLLLLDE 668 (1111)
Q Consensus 593 V~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl----~~P~lLLLDE 668 (1111)
|.. .. .++++++++. .+..++.+. .||||||||++||++|+ .+|+++||||
T Consensus 89 ------~~~-------~~----~~~~~~~l~~---~~~~~~~~~-----~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI-------IS----QGDVSEIIEA---PGKKVQRLS-----LLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE-------Ee----hhhHHHHHhC---CCccccchh-----hcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 01 1245666666 444555554 49999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCc
Q 001270 669 PTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGG 720 (1111)
Q Consensus 669 PTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG 720 (1111)
||+|||+.+...+++.|+++++ +.|||++||+++. .+.+|+++.+...+
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~--~~~~d~v~~~~~~~ 192 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKGT--MEAADRLYGVTMQE 192 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH--HhhcceEEEEEecc
Confidence 9999999999999999999865 6899999999864 37899999997644
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.1e-25 Score=263.08 Aligned_cols=211 Identities=28% Similarity=0.449 Sum_probs=175.3
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc----ccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH----SYK 575 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~----~~r 575 (1111)
..++++|++.. ..++||||++.+|||++|-|-=|||+|-|+++|.|... ..+|+|.++|+++... ..+
T Consensus 262 ~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~ 333 (500)
T COG1129 262 PVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIK 333 (500)
T ss_pred cEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHH
Confidence 35677877642 25899999999999999999999999999999999543 5789999999986432 456
Q ss_pred ccEEEEccC---CCCCCCCCHHHHHHHHHHhhcc-c-cchHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHH
Q 001270 576 KIIGFVPQD---DIVHGNLTVEENLWFHARCRLS-A-HLAKADKVLVIERVIDTLGLQTV-RDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 576 ~~IgyV~Qd---~~l~~~LTV~EnL~f~a~~~~~-~-~~~~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~rgLSGGQrQ 649 (1111)
..|+|||.| ..++..++|.+|+.+....+.. . -+......+.+++.++.|++... .+..+++ ||||.+|
T Consensus 334 ~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~-----LSGGNQQ 408 (500)
T COG1129 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGT-----LSGGNQQ 408 (500)
T ss_pred cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhc-----CCchhhh
Confidence 789999987 4678899999999887322211 1 24455556678999999998543 4556655 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEe
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYH 725 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~ 725 (1111)
||.|||.|..+|+||||||||.|+|.-++.+|.++|++++++|++||++|.++.+ +..++|||++|.+| +++..
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpE-ll~~~DRIlVm~~G-ri~~e 482 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPE-LLGLSDRILVMREG-RIVGE 482 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHH-HHhhCCEEEEEECC-EEEEE
Confidence 9999999999999999999999999999999999999999999999999999975 67899999999874 66653
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=4.4e-26 Score=246.97 Aligned_cols=198 Identities=16% Similarity=0.278 Sum_probs=136.1
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC--------------CCCcee-------
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAI--------------ACKATG------- 560 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~--------------~~~~sG------- 560 (1111)
|+++|. ++| +++.++++++ |++++|+|||||||||||++|++++. ..+.+|
T Consensus 4 i~~~nf-ksy--~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~ 75 (243)
T cd03272 4 VIIQGF-KSY--KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAY 75 (243)
T ss_pred EEEeCc-cCc--ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEE
Confidence 444543 234 3456888876 78999999999999999999984310 012234
Q ss_pred -EEEECCeeC------CcccccccEEEEccCCCCCC-CCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcccc
Q 001270 561 -LILINGKNE------PIHSYKKIIGFVPQDDIVHG-NLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRD 632 (1111)
Q Consensus 561 -~I~inG~~~------~~~~~r~~IgyV~Qd~~l~~-~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d 632 (1111)
+|.+++.+. .....++.+|+++|+..+++ ..|..|...+............ ......++.+.+++.+..+
T Consensus 76 v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~--~~~~qg~i~~l~~l~~~~~ 153 (243)
T cd03272 76 VEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPY--YIVPQGKINSLTNMKQDEQ 153 (243)
T ss_pred EEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCc--EEEEcCchHHhhhcccccc
Confidence 556655321 11245678999999988877 4677776655443322110000 0000112333455554455
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHH
Q 001270 633 SLVGTVEKRGISGGQRKRVHVGLEMVM----EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFR 708 (1111)
Q Consensus 633 ~~vg~~~~rgLSGGQrQRVaIArALl~----~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~ 708 (1111)
..+. .||||||||++|||+|+. +|+++||||||+|||+.++..+++.|+++++ +.+||+++|+++ +.+
T Consensus 154 ~~~~-----~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~--~~~ 225 (243)
T cd03272 154 QEMQ-----QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPE--LLE 225 (243)
T ss_pred cccc-----ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHh
Confidence 5554 499999999999999974 5899999999999999999999999999865 788888888864 558
Q ss_pred hcCeEEEEe
Q 001270 709 MFDDLVLLA 717 (1111)
Q Consensus 709 ~~D~vilL~ 717 (1111)
.+|++++|.
T Consensus 226 ~~d~i~~l~ 234 (243)
T cd03272 226 VADKFYGVK 234 (243)
T ss_pred hCCEEEEEE
Confidence 999999986
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=6.9e-26 Score=242.05 Aligned_cols=194 Identities=18% Similarity=0.167 Sum_probs=134.9
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEe-CCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCe--eCCcccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIR-PGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGK--NEPIHSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~-~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~--~~~~~~~r~ 576 (1111)
..|+++|+. +|.+. ++|+|... +|++++|+|||||||||||++|++.+. .+..+....+.. .+.....+.
T Consensus 4 ~~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~-g~~~~~~~~~~~~~~~~~~~~~~ 76 (213)
T cd03279 4 LKLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY-GKTPRYGRQENLRSVFAPGEDTA 76 (213)
T ss_pred EEEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe-cCccccccchhHHHHhcCCCccE
Confidence 367888887 66322 56666544 589999999999999999999996432 123344433211 112233456
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.|++++|++.... ++..+. ++...+..+. ..++..++.+..++.+.+ ||||||||++||++
T Consensus 77 ~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~--~~l~~g~l~~~l~~~~~~-----lS~G~~~r~~la~a 137 (213)
T cd03279 77 EVSFTFQLGGKKY--RVERSR----------GLDYDQFTRI--VLLPQGEFDRFLARPVST-----LSGGETFLASLSLA 137 (213)
T ss_pred EEEEEEEECCeEE--EEEEec----------CCCHHHHHHh--hhhhhcchHHHhcCCccc-----cCHHHHHHHHHHHH
Confidence 7999999864311 221111 1222111110 123344455666666554 99999999999999
Q ss_pred Hhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCc
Q 001270 657 MVM----------EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGG 720 (1111)
Q Consensus 657 Ll~----------~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG 720 (1111)
|+. +|++|||||||++||+.+...+.+.|++++++|.|||++||+++. +...+|+++++.+||
T Consensus 138 l~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~-~~~~~~~i~~~~~~~ 210 (213)
T cd03279 138 LALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEEL-KERIPQRLEVIKTPG 210 (213)
T ss_pred HHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHH-HHhhCcEEEEEecCC
Confidence 985 578999999999999999999999999998779999999999875 457788888888776
No 376
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=1.4e-26 Score=235.03 Aligned_cols=208 Identities=25% Similarity=0.383 Sum_probs=174.2
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.+.++||...- -|-.+|+.+..||++-+||||||||||||-.++|+. +.+|+|.++|.++. ..++.++
T Consensus 3 l~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~---~~sGsi~~~G~~l~~~~~~eLArh 73 (248)
T COG4138 3 LMQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSATELARH 73 (248)
T ss_pred eeeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC---CCCceEEECCcchhHHhHhHHHHH
Confidence 35677776543 377899999999999999999999999999999976 47899999999863 3456677
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
-+|+.|+..-..-|-|+.+|.+.-+ ..+....++++.+.++|++...+.+.. |||||-|||-+|-..
T Consensus 74 RAYLsQqq~p~f~mpV~~YL~L~qP--------~~~~a~~i~~i~~~L~l~DKL~Rs~~q-----LSGGEWQRVRLAav~ 140 (248)
T COG4138 74 RAYLSQQQTPPFAMPVWHYLTLHQP--------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVV 140 (248)
T ss_pred HHHHhhccCCcchhhhhhhhhhcCc--------hHHHHHHHHHHHhhhcccchhhhhhhh-----cCcccceeeEEeEEE
Confidence 8899988666557889998876432 234445678888999999888877765 999999999999877
Q ss_pred hh-----C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 658 VM-----E--PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 658 l~-----~--P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
+. | .++||||||.++||...+..+-++|.+++.+|.+|||+.||++-. .+.+|++.+|.+| +++..|..++
T Consensus 141 LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhT-LrhA~~~wLL~rG-~l~~~G~~~e 218 (248)
T COG4138 141 LQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHT-LRHAHRAWLLKRG-KLLASGRREE 218 (248)
T ss_pred EEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhH-HHHHHHHHHHhcC-eEEeecchhh
Confidence 64 3 379999999999999999999999999999999999999999875 5899999999874 7889999988
Q ss_pred HH
Q 001270 731 VE 732 (1111)
Q Consensus 731 l~ 732 (1111)
+.
T Consensus 219 Vl 220 (248)
T COG4138 219 VL 220 (248)
T ss_pred hc
Confidence 74
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=4.6e-27 Score=251.56 Aligned_cols=190 Identities=14% Similarity=0.233 Sum_probs=141.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++|.. +| +.+.+|+++++ ++++|+||||||||||+++|.- ++|.+.. ...++++++
T Consensus 5 ~l~l~nfk-~~--~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~-~~~~~~i~~ 63 (212)
T cd03274 5 KLVLENFK-SY--AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF------------VFGFRAS-KMRQKKLSD 63 (212)
T ss_pred EEEEECcc-cC--CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH------------HhccCHH-HhhhhhHHH
Confidence 46677765 56 45679999987 8999999999999999999973 1232211 111357999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhcc-----ccchHHHHHH--HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLS-----AHLAKADKVL--VIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~-----~~~~~~~~~~--~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaI 653 (1111)
++|+..+++.+|+.|++.+....... .+........ ..+++++.++|.+..++.++. ||+|||||++|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~-----lS~G~~~r~~l 138 (212)
T cd03274 64 LIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISN-----LSGGEKTLSSL 138 (212)
T ss_pred HhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhh-----cCHHHHHHHHH
Confidence 99999889999999987665432100 0111111000 124566777887777776654 99999999999
Q ss_pred HHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 654 GLEMVM----EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 654 ArALl~----~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
|++++. +|++++|||||+|||+.++..+.+.|++++ ++.|+|++||+++ +.+.+|++++|...
T Consensus 139 a~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~~--~~~~~d~v~~~~~~ 205 (212)
T cd03274 139 ALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRNN--MFELADRLVGIYKT 205 (212)
T ss_pred HHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcHH--HHHhCCEEEEEEec
Confidence 999974 479999999999999999999999999975 4678999999964 56899999999753
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=9.7e-26 Score=246.48 Aligned_cols=179 Identities=17% Similarity=0.217 Sum_probs=134.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCe-eC-Cc----ccccccEEEEccCC---------CCCCCCCH
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGK-NE-PI----HSYKKIIGFVPQDD---------IVHGNLTV 593 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~-~~-~~----~~~r~~IgyV~Qd~---------~l~~~LTV 593 (1111)
..+++|+||||||||||+++|++++.+ ...|++++.|. ++ .. ...+..|++++|++ .+.+.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~-~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGI-TNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc-cccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 459999999999999999999997642 23468888775 32 11 12245899999985 34567899
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC--------------------ccccccccCccCCCCCHHHHHHHHH
Q 001270 594 EENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ--------------------TVRDSLVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 594 ~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~--------------------~~~d~~vg~~~~rgLSGGQrQRVaI 653 (1111)
.+++.++........ .+....+.+.++++.+|+. +..+..+ +.||||||||++|
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~-----~~lS~G~~qr~~l 177 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESL-----TELSGGQRSLVAL 177 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccc-----cccCHHHHHHHHH
Confidence 998876532211000 0112235678899999986 2233444 4599999999999
Q ss_pred HHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe
Q 001270 654 GLEMV----MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 654 ArALl----~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~ 717 (1111)
|++|+ .+|+++||||||++||+.++..+++.|+++. +|.|||++||+++ +.+.+|+++-+.
T Consensus 178 a~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~--~~~~~d~v~~~~ 242 (251)
T cd03273 178 SLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEG--MFNNANVLFRTR 242 (251)
T ss_pred HHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEE
Confidence 99998 5789999999999999999999999999985 5889999999954 567899998875
No 379
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.92 E-value=2.2e-24 Score=280.73 Aligned_cols=217 Identities=22% Similarity=0.323 Sum_probs=156.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHH---------HHhcCCCC-CCce-e----EEEEC
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLS---------ALAGKAIA-CKAT-G----LILIN 565 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLk---------iLaGl~~~-~~~s-G----~I~in 565 (1111)
.|+++|++. ..|+|||++|++||+++|.|+||||||||++ .|.|.... ...+ + -|.|+
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 467777752 3699999999999999999999999999999 55553211 0000 1 12333
Q ss_pred CeeCCc--c-----------ccc---------c-----cEEEEccC-------------------C--------------
Q 001270 566 GKNEPI--H-----------SYK---------K-----IIGFVPQD-------------------D-------------- 585 (1111)
Q Consensus 566 G~~~~~--~-----------~~r---------~-----~IgyV~Qd-------------------~-------------- 585 (1111)
..++.. . .+| + ...|.|+. +
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 221100 0 001 0 11222331 0
Q ss_pred -----CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHh-
Q 001270 586 -----IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV-RDSLVGTVEKRGISGGQRKRVHVGLEMV- 658 (1111)
Q Consensus 586 -----~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~rgLSGGQrQRVaIArALl- 658 (1111)
..+..+||.|+|.++............+..+++ ++++.+||.+. .++.+.+ |||||||||+||++|+
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~t-----LSGGE~QRV~LAraL~~ 826 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSS-----LSGGEIQRLKLAYELLA 826 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcccc-----CCHHHHHHHHHHHHHhh
Confidence 245678999999987653321111122333445 47889999876 6777655 9999999999999998
Q ss_pred --hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe-----CCcEEEEecCHhhH
Q 001270 659 --MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA-----KGGLTVYHGSVKKV 731 (1111)
Q Consensus 659 --~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~-----~GG~iv~~G~~~~l 731 (1111)
.+|++|||||||+|||+.+...+++.|++++++|.|||+++|+++. + +.+|++++|. ++|++++.|+++++
T Consensus 827 ~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 827 PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 6999999999999999999999999999998889999999999974 4 8999999995 35789999999887
Q ss_pred H
Q 001270 732 E 732 (1111)
Q Consensus 732 ~ 732 (1111)
.
T Consensus 905 ~ 905 (1809)
T PRK00635 905 I 905 (1809)
T ss_pred H
Confidence 5
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=4.2e-25 Score=235.05 Aligned_cols=168 Identities=19% Similarity=0.243 Sum_probs=127.7
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHh----cCCCCCCceeEEEECCeeCCcccccccEEEEccCC-----CCCCCCC
Q 001270 522 VTGKIRPGRITAVMGPSGAGKTTFLSALA----GKAIACKATGLILINGKNEPIHSYKKIIGFVPQDD-----IVHGNLT 592 (1111)
Q Consensus 522 VS~~I~~GeivaIiGpSGSGKSTLLkiLa----Gl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~-----~l~~~LT 592 (1111)
.++++.+| +++|+|||||||||||++|. |... +.+|.+..+.+.+.....+..|++++|++ .+...+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~--~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP--PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC--cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 34567788 99999999999999999995 7543 34565542222222234566899999987 3444568
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH------HHHHHHHhhCCCEEEE
Q 001270 593 VEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKR------VHVGLEMVMEPSLLLL 666 (1111)
Q Consensus 593 V~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQR------VaIArALl~~P~lLLL 666 (1111)
|.||+.+.. .. .+++.+ ++.+ +.||+||+|| ++||++|+.+|++++|
T Consensus 93 ~~~~~~~~~---------~~----~~~~~~---------~~~~-----~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFCH---------QG----ESNWPL---------LDMR-----GRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeeec---------hH----HHHHHH---------hcCc-----cccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 888886531 11 122232 3334 3499999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcE
Q 001270 667 DEPTSGLDSASSQ-LLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGL 721 (1111)
Q Consensus 667 DEPTSGLD~~s~~-~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~ 721 (1111)
||||++||+..+. .+.+.|++++++ |.|||++||+++. ...+|+++.|.++|+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~--~~~~d~i~~l~~~~~ 200 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEEL--VDAADHIYRVEKDGR 200 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHH--HhhCCEEEEEeeCCC
Confidence 9999999999999 999999998776 8899999999764 467999999987764
No 381
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.91 E-value=8.1e-24 Score=265.78 Aligned_cols=126 Identities=29% Similarity=0.410 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 001270 591 LTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRVHVGLEMVMEP---SLLLL 666 (1111)
Q Consensus 591 LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P---~lLLL 666 (1111)
|||.|++.|..... + .....++++.+||.. ..++.+.+ ||||||||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~~t-----LSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPATT-----LSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCccc-----CCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998865421 1 112457899999986 35666654 9999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe-----CCcEEEEecCHhhHH
Q 001270 667 DEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA-----KGGLTVYHGSVKKVE 732 (1111)
Q Consensus 667 DEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~-----~GG~iv~~G~~~~l~ 732 (1111)
||||+|||+.....+++.|+++.++|.|||+++|+++. + +.+|+++.|. +||++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~-i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV-I-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999998889999999999874 3 6799999994 568999999998774
No 382
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.91 E-value=2.7e-23 Score=247.25 Aligned_cols=198 Identities=26% Similarity=0.401 Sum_probs=159.1
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
-.|+++||++.-+.+ +..|++.++.|++||.+-|.|+||||||||+|+|+|+-+. .+|+|.+- -...+-
T Consensus 391 ~~i~~~nl~l~~p~~-~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~--g~G~I~~P--------~~~~~l 459 (604)
T COG4178 391 HGITLENLSLRTPDG-QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW--GSGRISMP--------ADSALL 459 (604)
T ss_pred ceeEEeeeeEECCCC-CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCcc--CCCceecC--------CCCceE
Confidence 468999999998754 4899999999999999999999999999999999997653 45776542 124588
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccC-ccCCCCCHHHHHHHHHHHHHh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGT-VEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~-~~~rgLSGGQrQRVaIArALl 658 (1111)
|+||.|.+... |.+|-|.+..... ..+. +.+.++|.++||.+..++.-+. ...+.||+||||||++||.|+
T Consensus 460 flpQ~PY~p~G-tLre~l~YP~~~~---~~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL 531 (604)
T COG4178 460 FLPQRPYLPQG-TLREALCYPNAAP---DFSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLL 531 (604)
T ss_pred EecCCCCCCCc-cHHHHHhCCCCCC---CCCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHH
Confidence 99999988765 9999998754321 1222 3467889999998876654332 123569999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
++|++++|||.|++||+.++..+.++|++.. .+.|||.|.|++.. ....++.+-+.+.
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl--~~~h~~~l~l~~~ 589 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTL--WNFHSRQLELLDD 589 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchhh--HHHHhhheeeccc
Confidence 9999999999999999999999999998743 48999999999874 4667776666543
No 383
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.5e-23 Score=234.00 Aligned_cols=205 Identities=23% Similarity=0.307 Sum_probs=162.4
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 576 (1111)
-.|+++|+.|.|.... .-+..||++|++||++-|+|.||||||||+++|+|++. |.+|+|++||++++. +++|+
T Consensus 321 ~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~--PqsG~I~ldg~pV~~e~ledYR~ 397 (546)
T COG4615 321 KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPVSAEQLEDYRK 397 (546)
T ss_pred cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC--CCCCceeECCccCCCCCHHHHHH
Confidence 4689999999996543 45899999999999999999999999999999999875 689999999998754 46888
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.++-||-|..+|+.+--.| .... ...++..++++.|.+...-.-|+-..-.||.|||||+++-.|
T Consensus 398 LfSavFsDyhLF~~ll~~e------------~~as---~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~A 462 (546)
T COG4615 398 LFSAVFSDYHLFDQLLGPE------------GKAS---PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLA 462 (546)
T ss_pred HHHHHhhhHhhhHhhhCCc------------cCCC---hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHH
Confidence 8999999988887531111 1111 123566777776654332222222234599999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEe
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRR-EALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYH 725 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~-la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~ 725 (1111)
|+-+-+|+++||=-+.-||.-++.+.+.+.- +.++|+||+.||||-. -|..+||++.+.+| ++++.
T Consensus 463 llEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~G-~~~e~ 529 (546)
T COG4615 463 LLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRNG-QLSEL 529 (546)
T ss_pred HHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhcC-ceeec
Confidence 9999999999999999999999999876654 4567999999999965 47899999999875 66554
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=1e-23 Score=243.44 Aligned_cols=208 Identities=21% Similarity=0.313 Sum_probs=163.5
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
-.|.+.|++|.|.++. .++++++|-|..++.+|+|||||+|||||||++.|.+. |..|.|.-.-+ .+++
T Consensus 388 pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H--------~~~~ 456 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSH--------NKLP 456 (614)
T ss_pred CeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccccc--------ccch
Confidence 3578999999997544 79999999999999999999999999999999999765 67888754322 2244
Q ss_pred EEccC--CCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHH
Q 001270 580 FVPQD--DIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 580 yV~Qd--~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
+.-|. ..+--+.++.|++.=.. ......+.+..++.++||.. ..+.++. .||+|||.||.+|+.
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~~-----~LS~Gqr~rVlFa~l 523 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPMS-----QLSDGQRRRVLFARL 523 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccchh-----hcccccchhHHHHHH
Confidence 44454 22333567777775321 11122345788999999984 4445554 599999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYF 735 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f 735 (1111)
++..|.||||||||+|||..+...+-+.|.+. ..+||+|+||... +-+.++++.+..+++...+.|....-.+..
T Consensus 524 ~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G~i~~yk~~l 598 (614)
T KOG0927|consen 524 AVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDGDIEIYKEHL 598 (614)
T ss_pred HhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCccHHHHHHHH
Confidence 99999999999999999999999998888764 3489999999875 668999999999998889999876554443
No 385
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.89 E-value=1.8e-22 Score=232.39 Aligned_cols=222 Identities=21% Similarity=0.362 Sum_probs=182.4
Q ss_pred ceEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC----Ccc-c
Q 001270 499 LIEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE----PIH-S 573 (1111)
Q Consensus 499 ~i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~----~~~-~ 573 (1111)
...|+++||+..-.. ....+++|||++..|||+||.|-.|-|-+.|+.+|+|+.. +.+|+|.++|+++ +.. .
T Consensus 255 ~~vL~V~~L~v~~~~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 255 EVVLEVEDLSVKDRR-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK--PASGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CeEEEEeeeEeecCC-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc--cCCceEEECCEeccccCCHHHH
Confidence 356899999987543 3468999999999999999999999999999999999864 3569999999985 222 2
Q ss_pred ccccEEEEccCC---CCCCCCCHHHHHHHHHHhhc---c-ccchHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCH
Q 001270 574 YKKIIGFVPQDD---IVHGNLTVEENLWFHARCRL---S-AHLAKADKVLVIERVIDTLGLQTV-RDSLVGTVEKRGISG 645 (1111)
Q Consensus 574 ~r~~IgyV~Qd~---~l~~~LTV~EnL~f~a~~~~---~-~~~~~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~rgLSG 645 (1111)
.+..+||||+|. .+.+.+|+.||+.+...... . .-+...+..+.+.++++.++.... .+..+ +.|||
T Consensus 332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a-----~~LSG 406 (501)
T COG3845 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPA-----RSLSG 406 (501)
T ss_pred HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcch-----hhcCC
Confidence 346799999985 56778999999988654211 1 123344555678899999988632 23333 45999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEe
Q 001270 646 GQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYH 725 (1111)
Q Consensus 646 GQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~ 725 (1111)
|.+||+-+||+|..+|++||+.+||.|||..+.+.|.+.|.+++++|+.|++++-++++ ++.++|+|.+|.+ |+++..
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDE-il~lsDrIaVi~~-Gri~~~ 484 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDE-ILELSDRIAVIYE-GRIVGI 484 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHH-HHHhhheeeeeeC-Cceecc
Confidence 99999999999999999999999999999999999999999999999999999999985 6799999999987 577776
Q ss_pred cCHhh
Q 001270 726 GSVKK 730 (1111)
Q Consensus 726 G~~~~ 730 (1111)
.++++
T Consensus 485 ~~~~~ 489 (501)
T COG3845 485 VPPEE 489 (501)
T ss_pred ccccc
Confidence 66654
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=2.6e-22 Score=251.83 Aligned_cols=126 Identities=27% Similarity=0.403 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhh---CCCEEE
Q 001270 590 NLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRVHVGLEMVM---EPSLLL 665 (1111)
Q Consensus 590 ~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRVaIArALl~---~P~lLL 665 (1111)
.|||.|.+.|..... . .....++++.+||.. ..++.+.+ |||||+|||.||++|+. +|+++|
T Consensus 789 ~~tv~e~~~f~~~~~------~---i~~~l~~L~~~gL~~l~l~~~~~t-----LSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP------S---ISRKLQTLCDVGLGYIKLGQPATT-----LSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc------c---hhHHHHHHHHcCCCchhhcCcccc-----CCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467888887765421 1 112457888999975 35666554 99999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe-----CCcEEEEecCHhhH
Q 001270 666 LDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA-----KGGLTVYHGSVKKV 731 (1111)
Q Consensus 666 LDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~-----~GG~iv~~G~~~~l 731 (1111)
|||||+|||+..+..+++.|+++.++|.|||+++|+++. + +.+|++++|. +||++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999999998889999999999874 3 6799999994 57899999998765
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.89 E-value=6.8e-23 Score=236.63 Aligned_cols=213 Identities=25% Similarity=0.400 Sum_probs=147.2
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.+.++|++++| .++.+++|++|++.+|+.+||+|+|||||||+|++|+|...|.|..=.++.-.+...... .+-+-+
T Consensus 75 dvk~~sls~s~--~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~-~~av~~ 151 (614)
T KOG0927|consen 75 DVKIESLSLSF--HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE-KQAVQA 151 (614)
T ss_pred cceeeeeeecc--CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch-HHHHHH
Confidence 57889999999 457899999999999999999999999999999999998765443333333332221111 011111
Q ss_pred EccCCCCCCCCCHHHHHHHHHH------------------hhccccchHHHHHHHHHHHHHHcCC-CccccccccCccCC
Q 001270 581 VPQDDIVHGNLTVEENLWFHAR------------------CRLSAHLAKADKVLVIERVIDTLGL-QTVRDSLVGTVEKR 641 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~------------------~~~~~~~~~~~~~~~v~~vL~~LGL-~~~~d~~vg~~~~r 641 (1111)
|.+. .-..+.-+..... .+. ..+.......++-.++..+|. .+..++.+.+
T Consensus 152 v~~~-----~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~-~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~---- 221 (614)
T KOG0927|consen 152 VVME-----TDHERKRLEYLAEDLAQACDDKEKDELDELYERL-DEMDNDTFEAKAAKILHGLGFLSEMQDKKVKD---- 221 (614)
T ss_pred Hhhh-----hHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHH-HhhCchhHHHHHHHHHHhcCCCHhHHHHHhhc----
Confidence 1100 0001111111000 000 011112222345556666665 4566776654
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCccHHHHHhcCeEEEEeCCc
Q 001270 642 GISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGV-NICLVVHQPSYALFRMFDDLVLLAKGG 720 (1111)
Q Consensus 642 gLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~-TVIivtHq~~~~i~~~~D~vilL~~GG 720 (1111)
||||+|.|+++||+|..+|++|+|||||++||..+..-+-+.|.+. .. ++|+++|..+. +-..|.+|+-|.++.
T Consensus 222 -~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~---d~~~lVi~sh~QDf-ln~vCT~Ii~l~~kk 296 (614)
T KOG0927|consen 222 -LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY---DRIILVIVSHSQDF-LNGVCTNIIHLDNKK 296 (614)
T ss_pred -cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc---cCceEEEEecchhh-hhhHhhhhheecccc
Confidence 9999999999999999999999999999999999999988888764 33 89999998775 568999999998876
Q ss_pred EEEEecCHhhH
Q 001270 721 LTVYHGSVKKV 731 (1111)
Q Consensus 721 ~iv~~G~~~~l 731 (1111)
.+.|.|+.+..
T Consensus 297 l~~y~Gnydqy 307 (614)
T KOG0927|consen 297 LIYYEGNYDQY 307 (614)
T ss_pred eeeecCCHHHH
Confidence 68899998764
No 388
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=8.3e-22 Score=223.55 Aligned_cols=189 Identities=26% Similarity=0.364 Sum_probs=150.4
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
..+++.+++++|++ .-|+-=.++|..||+++++||||-|||||+++|+|.+. |++|. . ..-+|+
T Consensus 341 ~lv~y~~~~k~~g~---F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~-------~~~~vS 404 (591)
T COG1245 341 TLVEYPDLKKTYGD---FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----E-------EDLKVS 404 (591)
T ss_pred eeeecchheeecCc---eEEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----C-------ccceEe
Confidence 34677788888742 35666678889999999999999999999999999775 57776 1 123488
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|=||--.--...||++-|.-..+....... ...++++-|.|+...++.+.+ |||||.|||+||.+|.+
T Consensus 405 yKPQyI~~~~~gtV~~~l~~~~~~~~~~s~-------~~~ei~~pl~l~~i~e~~v~~-----LSGGELQRvaIaa~L~r 472 (591)
T COG1245 405 YKPQYISPDYDGTVEDLLRSAIRSAFGSSY-------FKTEIVKPLNLEDLLERPVDE-----LSGGELQRVAIAAALSR 472 (591)
T ss_pred ecceeecCCCCCcHHHHHHHhhhhhcccch-------hHHhhcCccchHHHHhccccc-----CCchhHHHHHHHHHhcc
Confidence 889965444567999988765443221111 235688889999999998876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEe
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~ 717 (1111)
+++|.+||||++.||.+.+..+-+.|++...+ ++|.++|-||+-.. --+.|++++..
T Consensus 473 eADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~-dyvsDr~ivF~ 530 (591)
T COG1245 473 EADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI-DYVSDRLIVFE 530 (591)
T ss_pred ccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehh-hhhhceEEEEe
Confidence 99999999999999999999999999999864 89999999998643 34567777764
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=1.8e-21 Score=206.48 Aligned_cols=166 Identities=22% Similarity=0.196 Sum_probs=120.4
Q ss_pred EeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEE--CCee----CCcccccccEEEEccCCCCCCCCC
Q 001270 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILI--NGKN----EPIHSYKKIIGFVPQDDIVHGNLT 592 (1111)
Q Consensus 519 L~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~i--nG~~----~~~~~~r~~IgyV~Qd~~l~~~LT 592 (1111)
++++++++.+| +.+|+|||||||||||.+|.... .|+... .|.. +........|.+++|+..+++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l-----~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL-----GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh-----cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC---
Confidence 46788888887 88999999999999999997422 122211 1211 011112356889998876654
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeC
Q 001270 593 VEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM----VMEPSLLLLDE 668 (1111)
Q Consensus 593 V~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL----l~~P~lLLLDE 668 (1111)
| . ... .....++++++. .+..++.+++ ||+|||||++||++| +.+|+++||||
T Consensus 83 ---~-----~------~~~-~~~~~~~~~l~~---~~~~~~~~~~-----lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 83 ---N-----P------LCV-LSQDMARSFLTS---NKAAVRDVKT-----LSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred ---C-----c------CCH-HHHHHHHHHhcc---ccccCCcccc-----cChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 1 0 001 112345666665 4555666654 999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEecCccHHHHHhcCeEEEEeC
Q 001270 669 PTSGLDSASSQLLLRALRREALE---GVNICLVVHQPSYALFRMFDDLVLLAK 718 (1111)
Q Consensus 669 PTSGLD~~s~~~Il~~L~~la~~---G~TVIivtHq~~~~i~~~~D~vilL~~ 718 (1111)
||+|||+.++..+.+.|+++.++ +.|||+++|+++.. ..+|+|.+|..
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i--~~~d~v~~~~~ 190 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGL--ASSDDVKVFRM 190 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc--ccccceeEEEe
Confidence 99999999999999999998653 35899999999853 34599999875
No 390
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=4.7e-22 Score=217.24 Aligned_cols=183 Identities=14% Similarity=0.209 Sum_probs=120.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC--C--------cccccccEEEEccCCCC-CCCCCHHH
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE--P--------IHSYKKIIGFVPQDDIV-HGNLTVEE 595 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~--~--------~~~~r~~IgyV~Qd~~l-~~~LTV~E 595 (1111)
.++ +++|+|||||||||||++|++... +..|++..++... . .....-.+.|..|++.. ....++.+
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~--~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~ 97 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLG--EKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITG 97 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhC--CCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEEC
Confidence 344 999999999999999999998764 2356665543210 0 00112234444444321 00111211
Q ss_pred HHHHHHHhhcc-ccchHHHHHHHHHHHHHHcCCCcccccc---------ccCcc--------CCCCCHHHHHHHHHHHHH
Q 001270 596 NLWFHARCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSL---------VGTVE--------KRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 596 nL~f~a~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~---------vg~~~--------~rgLSGGQrQRVaIArAL 657 (1111)
... ..+.. .... ...++++++.+|+....... +.+.. +..||||||||++||+++
T Consensus 98 ~~~---~~~ingk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al 170 (247)
T cd03275 98 GSS---SYRINGKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLF 170 (247)
T ss_pred Cce---EEEECCEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHH
Confidence 110 00111 1111 22356888889985321110 11111 256999999999999999
Q ss_pred hhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcE
Q 001270 658 VME----PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGL 721 (1111)
Q Consensus 658 l~~----P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~ 721 (1111)
+.+ |+++||||||+|||+..+..+.+.|++++++|.+||++||+++ +.+.+|++++|.+.+.
T Consensus 171 ~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~--~~~~~d~i~~~~~~~~ 236 (247)
T cd03275 171 AIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEE--FFSKADALVGVYRDQE 236 (247)
T ss_pred HHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHH--HHhhCCeEEEEEecCC
Confidence 975 8999999999999999999999999999877999999999965 4588999999987643
No 391
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=2.1e-21 Score=202.03 Aligned_cols=227 Identities=17% Similarity=0.256 Sum_probs=164.2
Q ss_pred EEEEeEEEEEc--CCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCC--CceeEEEECCeeC---Ccccc
Q 001270 502 VSFKDLTLTLK--GKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIAC--KATGLILINGKNE---PIHSY 574 (1111)
Q Consensus 502 L~~~nLs~~y~--~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~--~~sG~I~inG~~~---~~~~~ 574 (1111)
+.++||+..+. .+...++++||+++.+||+-+++|.||||||-..|+|.|..... .+.-..++++.++ ++++.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 34566666653 34567899999999999999999999999999999999965321 1223445555442 22222
Q ss_pred c----ccEEEEccCCC--CCCCCCHHHHHHHHHHhhcccc-chH--HHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 001270 575 K----KIIGFVPQDDI--VHGNLTVEENLWFHARCRLSAH-LAK--ADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISG 645 (1111)
Q Consensus 575 r----~~IgyV~Qd~~--l~~~LTV~EnL~f~a~~~~~~~-~~~--~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSG 645 (1111)
| +.|+++||++. +-|.-+|...|.-......-++ ..+ .-++.++-+++..+|+.+..|-.- ..+.+|--
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~--SYP~ElTe 161 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR--SYPYELTE 161 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH--hCcchhcc
Confidence 2 46899999985 3343344333321111110000 000 012235668899999987655322 24566999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEE
Q 001270 646 GQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVY 724 (1111)
Q Consensus 646 GQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~ 724 (1111)
||-|+|.||.|++.+|++||.||||+++|+.++.+|.++|.++.+ +|.||++++||+.. +-+.+|++-+|.-| +.++
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~W~d~i~VlYCG-Q~~E 239 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQWADKINVLYCG-QTVE 239 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHHHhhheEEEEec-cccc
Confidence 999999999999999999999999999999999999999999875 58999999999875 56899999999864 6788
Q ss_pred ecCHhhHH
Q 001270 725 HGSVKKVE 732 (1111)
Q Consensus 725 ~G~~~~l~ 732 (1111)
.++.+++.
T Consensus 240 Sa~~e~l~ 247 (330)
T COG4170 240 SAPSEELV 247 (330)
T ss_pred ccchhHHh
Confidence 99888775
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.7e-21 Score=224.02 Aligned_cols=205 Identities=22% Similarity=0.308 Sum_probs=145.5
Q ss_pred ceEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccE
Q 001270 499 LIEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKII 578 (1111)
Q Consensus 499 ~i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 578 (1111)
..+|...+.++.| +.+.+|.+-++++..|..+||+|+||+|||||||+|+. |.|.+...+ .+.+.
T Consensus 78 ~~Di~~~~fdLa~--G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v~~f~ve---qE~~g-- 142 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY--GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQVSGFHVE---QEVRG-- 142 (582)
T ss_pred ccceeeeeeeeee--cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCcCccCch---hheec--
Confidence 3578888999999 56789999999999999999999999999999999986 333332211 11111
Q ss_pred EEEccC-CCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHH
Q 001270 579 GFVPQD-DIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV-RDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 579 gyV~Qd-~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
-+++-. ..+..++++.+-|.-...+ .... ...+...++|..+|..+- ....+++ ||||-|-|+++|||
T Consensus 143 ~~t~~~~~~l~~D~~~~dfl~~e~~l--~~~~---~l~ei~~~~L~glGFt~emq~~pt~s-----lSGGWrMrlaLARA 212 (582)
T KOG0062|consen 143 DDTEALQSVLESDTERLDFLAEEKEL--LAGL---TLEEIYDKILAGLGFTPEMQLQPTKS-----LSGGWRMRLALARA 212 (582)
T ss_pred cchHHHhhhhhccHHHHHHHHhhhhh--hccc---hHHHHHHHHHHhCCCCHHHHhccccc-----cCcchhhHHHHHHH
Confidence 112111 1222233333322211111 0011 222334448888998654 4455544 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|..+|+||||||||+.||..+..-+-+.|+.. +.|+|+|+||-.+ +-..|.+||.+++...-.|.|+.++..
T Consensus 213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~F-Ln~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRNF-LNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred HhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHHH-HHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 99999999999999999999999998888764 4799999999765 567888999998765557889877653
No 393
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.84 E-value=2.2e-20 Score=217.30 Aligned_cols=206 Identities=21% Similarity=0.300 Sum_probs=156.5
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
..|++++|++.-+.++..+++|+||+|+.|+-+.|.||||||||+|||+|+|+-+ ..+|.|.--.+.. .+.+-
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp--~~~G~l~k~~~~~-----~~~lf 504 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP--STGGKLTKPTDGG-----PKDLF 504 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc--cCCCeEEecccCC-----CCceE
Confidence 4689999999987655678899999999999999999999999999999999653 4778886543321 15589
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccC------ccCCCCCHHHHHHHHH
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGT------VEKRGISGGQRKRVHV 653 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~------~~~rgLSGGQrQRVaI 653 (1111)
||||.|.+-.. |.||-+.|....-. ...+....+++.+.|+.++|.+..++.-|= ..-..||+||+||++.
T Consensus 505 flPQrPYmt~G-TLRdQvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ 581 (659)
T KOG0060|consen 505 FLPQRPYMTLG-TLRDQVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAF 581 (659)
T ss_pred EecCCCCcccc-chhheeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHH
Confidence 99999987654 99999988632111 111112233566677777766554432211 1123599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCc
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGG 720 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG 720 (1111)
||-+.++|++-||||-||++|...+..+.+.+++ .|.|.|-|.|+.+. .+.=|.++-|.-+|
T Consensus 582 ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkSL--~kfHd~~L~~~g~g 643 (659)
T KOG0060|consen 582 ARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKSL--WKFHDYVLRMDGRG 643 (659)
T ss_pred HHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHHH--HhhhhEEEEecCCC
Confidence 9999999999999999999999999999888876 49999999999874 35556666675444
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=8.5e-21 Score=212.98 Aligned_cols=201 Identities=26% Similarity=0.372 Sum_probs=157.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|-++||+|.|+ +.++++++++|-|.-...+||+||||.||||||++|.|.+. |..|+.+-| .|-+||+
T Consensus 586 vLGlH~VtFgy~-gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKn--------hrL~iG~ 654 (807)
T KOG0066|consen 586 VLGLHDVTFGYP-GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKN--------HRLRIGW 654 (807)
T ss_pred eeecccccccCC-CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhcc--------ceeeeec
Confidence 477899999997 45789999999999999999999999999999999999664 577776433 2446999
Q ss_pred EccCC--CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 581 VPQDD--IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 581 V~Qd~--~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
.-|.. .|-..-|.-|.|.-... ++..+ +...|..+||...+++. ....||||||-||++|---+
T Consensus 655 FdQh~~E~L~~Eetp~EyLqr~FN------lpyq~----ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal 720 (807)
T KOG0066|consen 655 FDQHANEALNGEETPVEYLQRKFN------LPYQE----ARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELAL 720 (807)
T ss_pred hhhhhHHhhccccCHHHHHHHhcC------CChHH----HHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhc
Confidence 98864 34445577777653222 22222 35668889998777763 34569999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
..|+||||||||++||..+...+.+.|.+. ...||||+||-+.. .+.-+.++|+.+.|.---.|..++
T Consensus 721 ~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRLi-~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 721 GGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERLI-VETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred CCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEeccccee-eecCceEEEEccCChhhccccHHH
Confidence 999999999999999999999999999876 34799999998753 456667888888765444566554
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.82 E-value=1.1e-19 Score=189.01 Aligned_cols=212 Identities=25% Similarity=0.367 Sum_probs=159.9
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC-C---c----
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE-P---I---- 571 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~-~---~---- 571 (1111)
..|++.++.|+|+.. .+++-|+|++++.|....++|.||||||||||+|+|.... ..|.|.++|++. . .
T Consensus 12 ~aievsgl~f~y~~~-dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv--~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS-DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMV--GGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred ceEEEeccEEecccC-CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccc--cCCeEEEcCcCccccccccccC
Confidence 368899999999754 4899999999999999999999999999999999996543 349999999752 1 0
Q ss_pred ------ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 001270 572 ------HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISG 645 (1111)
Q Consensus 572 ------~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSG 645 (1111)
.++.+.+++-- +.-+...+++.+.| |+.. .... ++-+++++.|+++-. -+. +.+|-
T Consensus 89 dl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDIdl~--WRm-----HkvSD 150 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDIDLR--WRM-----HKVSD 150 (291)
T ss_pred ceeEecccccccccccc-cccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheeccce--EEE-----eeccc
Confidence 12334444433 22344466765544 4432 1111 234677888877522 122 23899
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEE
Q 001270 646 GQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVY 724 (1111)
Q Consensus 646 GQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~ 724 (1111)
|||+||.|++-|++.=++|+|||-|-.||..++..+++.|++..+ +|.|||..||--+- +.....+++.|.. |+++-
T Consensus 151 GqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~~-Gkl~~ 228 (291)
T KOG2355|consen 151 GQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIKS-GKLVD 228 (291)
T ss_pred cchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEecC-Ceeee
Confidence 999999999999999999999999999999999999999999875 49999999998763 5678889999975 57777
Q ss_pred ecCHhhHHHH
Q 001270 725 HGSVKKVEEY 734 (1111)
Q Consensus 725 ~G~~~~l~~~ 734 (1111)
.-+.+++.++
T Consensus 229 ~l~~~~i~e~ 238 (291)
T KOG2355|consen 229 NLKYQKIKEF 238 (291)
T ss_pred ccccchhhhh
Confidence 6565555543
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=4.5e-19 Score=204.38 Aligned_cols=208 Identities=22% Similarity=0.321 Sum_probs=159.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.+++.+|+|.|..+.-.++.++++.++.-..++++|+||+||||+++++.|-.. |..|.+.+.+ |.+|+|
T Consensus 362 ~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~--------r~ri~~ 431 (582)
T KOG0062|consen 362 NLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP--------RLRIKY 431 (582)
T ss_pred eeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc--------cceecc
Confidence 478899999996544368999999999999999999999999999999999543 5678776654 567999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
-.|...=+-.+.|-+-- +....+ .+..++ .+++-+..+||+. .....+ .+||||||-||++|.....
T Consensus 432 f~Qhhvd~l~~~v~~vd-~~~~~~--pG~~~e----e~r~hl~~~Gl~g~la~~si-----~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 432 FAQHHVDFLDKNVNAVD-FMEKSF--PGKTEE----EIRRHLGSFGLSGELALQSI-----ASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred hhHhhhhHHHHHhHHHH-HHHHhC--CCCCHH----HHHHHHHhcCCCchhhhccc-----cccCCcchhHHHHHHHhcC
Confidence 99975444344443322 222222 122222 3567788999964 333333 4599999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEY 734 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~ 734 (1111)
+|.+|+|||||+.||-.+-..+.+.|+.. +-.||+||||.++ +-..|+.+++.++|...-..|...+-..+
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ieg~~~~yKkl 570 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTPIEGGIDKYKKL 570 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEeeeccHHHHHHH
Confidence 99999999999999999999999999875 3479999999875 56789999999987766677777554443
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.79 E-value=7e-19 Score=188.79 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEecCccHHHHHhcC--
Q 001270 640 KRGISGGQRKRVHVGLEM----VMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-G-VNICLVVHQPSYALFRMFD-- 711 (1111)
Q Consensus 640 ~rgLSGGQrQRVaIArAL----l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G-~TVIivtHq~~~~i~~~~D-- 711 (1111)
+..||||||||+.++++| +.+|+++|+||||+|||+.++..+++.|++++++ | .|+|++||++... .+.+|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~-~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPG-LNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccC-CcccCce
Confidence 345999999998877554 5899999999999999999999999999998766 5 5899999997654 35565
Q ss_pred eEEEEeCCc
Q 001270 712 DLVLLAKGG 720 (1111)
Q Consensus 712 ~vilL~~GG 720 (1111)
++++|.+|.
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 677777653
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.78 E-value=6.4e-19 Score=186.75 Aligned_cols=153 Identities=17% Similarity=0.124 Sum_probs=106.7
Q ss_pred eEeeeEEEEeCC-eEEEEEcCCCCCHHHHHHHHh-cCCCCCCcee-EEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 001270 518 LLRCVTGKIRPG-RITAVMGPSGAGKTTFLSALA-GKAIACKATG-LILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVE 594 (1111)
Q Consensus 518 IL~~VS~~I~~G-eivaIiGpSGSGKSTLLkiLa-Gl~~~~~~sG-~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 594 (1111)
-+.++|+++.+| ++++|+||||+||||||++|+ +... ...| .+-.. -...++|+.|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~--~~~G~~vp~~--------~~~~~~~~~~~~~~------- 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM--AQSGLPIPAA--------EGSSLPVFENIFAD------- 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH--HHcCCCcccc--------ccccCcCccEEEEe-------
Confidence 356889999999 489999999999999999998 1110 0011 00000 00123333333111
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 001270 595 ENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLD 674 (1111)
Q Consensus 595 EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD 674 (1111)
++..+..+..++ .+|+||||++.|+++ +.+|+++|+||||+|||
T Consensus 79 ------------------------------lg~~~~l~~~~s-----~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD 122 (200)
T cd03280 79 ------------------------------IGDEQSIEQSLS-----TFSSHMKNIARILQH-ADPDSLVLLDELGSGTD 122 (200)
T ss_pred ------------------------------cCchhhhhcCcc-----hHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCC
Confidence 111111122222 389999999999988 48999999999999999
Q ss_pred HHHHHHHHH-HHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 675 SASSQLLLR-ALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 675 ~~s~~~Il~-~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
+..+..+.. .++++.+.|.++|++||+.+ +.+.+|+++.|.+ |.+++++
T Consensus 123 ~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~--l~~~~d~~~~l~~-g~l~~~~ 172 (200)
T cd03280 123 PVEGAALAIAILEELLERGALVIATTHYGE--LKAYAYKREGVEN-ASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECCHHH--HHHHHhcCCCeEE-EEEEEec
Confidence 999999964 67777777999999999853 5689999999986 5776653
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.77 E-value=1e-18 Score=198.73 Aligned_cols=168 Identities=28% Similarity=0.384 Sum_probs=122.5
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccc---------------ccEEEEccCCCC
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYK---------------KIIGFVPQDDIV 587 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r---------------~~IgyV~Qd~~l 587 (1111)
..+|+++||+|+||-||||-+|+|+|.+.+ .=|+- ++.+-- ...+| -++..=+|-..+
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~P--NLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKP--NLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCcccc--CCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence 569999999999999999999999997653 22321 111100 00000 112233332222
Q ss_pred CC---CCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001270 588 HG---NLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLL 664 (1111)
Q Consensus 588 ~~---~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lL 664 (1111)
.| .-||.|-|.- .+..-..+++++.|+|++..|+-+.+ |||||-|||+||.+++++.+++
T Consensus 173 iPk~~KG~v~elLk~------------~de~g~~devve~l~L~nvl~r~v~~-----LSGGELQr~aIaa~l~rdADvY 235 (591)
T COG1245 173 IPKVVKGKVGELLKK------------VDERGKFDEVVERLGLENVLDRDVSE-----LSGGELQRVAIAAALLRDADVY 235 (591)
T ss_pred HHHHhcchHHHHHHh------------hhhcCcHHHHHHHhcchhhhhhhhhh-----cCchHHHHHHHHHHHhccCCEE
Confidence 22 1266665532 11122468899999999999998876 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCeEEEE
Q 001270 665 LLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRM-FDDLVLL 716 (1111)
Q Consensus 665 LLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~-~D~vilL 716 (1111)
++|||||-||...+....+.++++++.+++||+|.||+. +..+ +|-+.++
T Consensus 236 ~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa--vLD~lsD~vhI~ 286 (591)
T COG1245 236 FFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA--VLDYLSDFVHIL 286 (591)
T ss_pred EEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH--HHHHhhheeEEE
Confidence 999999999999999999999999988999999999985 3354 5555554
No 400
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.76 E-value=8.1e-18 Score=220.13 Aligned_cols=128 Identities=23% Similarity=0.332 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccc-cccccCccCCCCCHHHHHHHHHHHHHhhC---CCEEE
Q 001270 590 NLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVR-DSLVGTVEKRGISGGQRKRVHVGLEMVME---PSLLL 665 (1111)
Q Consensus 590 ~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~-d~~vg~~~~rgLSGGQrQRVaIArALl~~---P~lLL 665 (1111)
.|||.|.+.|... . .+..+.-+.|..+||.... .+.. ..|||||.||+-||..|..+ +.+++
T Consensus 1660 ~mtv~ea~~~F~~------~---~~i~~~L~~L~~vGLgYl~LGq~~-----~tLSGGE~qRikLa~~l~~~~~~~~lyi 1725 (1809)
T PRK00635 1660 QTPIEEVAETFPF------L---KKIQKPLQALIDNGLGYLPLGQNL-----SSLSLSEKIAIKIAKFLYLPPKHPTLFL 1725 (1809)
T ss_pred cCCHHHHHHHhhc------c---HHHHHHHHHHHHcCCCeeeCCCcC-----CccCchHHHHHHHHHHHhcCCCCCcEEE
Confidence 4678887777532 1 1123345678889997652 3333 34999999999999999875 78999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe-----CCcEEEEecCHhhHHH
Q 001270 666 LDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA-----KGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 666 LDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~-----~GG~iv~~G~~~~l~~ 733 (1111)
|||||+||++.....+++.|.+|...|.|||+|.|+++ +.+.+|.++-|. +||++++.|+++++.+
T Consensus 1726 lDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1726 LDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999999999986 457899999994 5789999999999863
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.76 E-value=6.5e-18 Score=176.56 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeC
Q 001270 643 ISGGQRKRVHVGLEMV----MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAK 718 (1111)
Q Consensus 643 LSGGQrQRVaIArALl----~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~ 718 (1111)
||||||||++||++|+ .+|+++++||||++||+..+..+.+.|++++++|.|+|+++|+++. ...+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~--~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEM--FENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH--HhhCCeEEEEEE
Confidence 8999999999999996 6999999999999999999999999999988778999999999864 478999999976
Q ss_pred C
Q 001270 719 G 719 (1111)
Q Consensus 719 G 719 (1111)
-
T Consensus 173 ~ 173 (178)
T cd03239 173 V 173 (178)
T ss_pred e
Confidence 3
No 402
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.7e-17 Score=199.26 Aligned_cols=129 Identities=29% Similarity=0.452 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 001270 590 NLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEP---SLLLL 666 (1111)
Q Consensus 590 ~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P---~lLLL 666 (1111)
.|||.|...|.... +. ..+.-+.|..+||.-.. .|. ....|||||.|||-||.+|..+. -++||
T Consensus 783 ~MTveEA~~FF~~~------p~---I~rkLqtL~dVGLgYi~---LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------PK---IARKLQTLVDVGLGYIK---LGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------hH---HHHHHHHHHHcCcceEe---cCC-ccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 47888888776532 21 12334566778987542 232 23459999999999999999887 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEE-----eCCcEEEEecCHhhHHH
Q 001270 667 DEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLL-----AKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 667 DEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL-----~~GG~iv~~G~~~~l~~ 733 (1111)
||||+||-....+.+++.|.+|...|-|||+|.|+++ +.+.+|.|+=| ++||.+|+.|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999999999999986 55899999998 46889999999999864
No 403
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.75 E-value=1.3e-18 Score=184.77 Aligned_cols=136 Identities=18% Similarity=0.174 Sum_probs=103.2
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEE 595 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 595 (1111)
+.+++|+++.. |++++|+||||||||||||+|+|... +...|.+++. -.+++|.+.+++.+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a------~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCA------SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEec------CccCcccceEEEeccchh
Confidence 45788887665 79999999999999999999998432 1234444322 137778788899999999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001270 596 NLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDS 675 (1111)
Q Consensus 596 nL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~ 675 (1111)
|+.++... ...+ ..++.++++.+++ .+|+++|+||||+|||+
T Consensus 79 ~l~~~~s~------~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGISY------FYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccCh------HHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 99875421 1112 2456777776652 69999999999999999
Q ss_pred HHHHHHHH-HHHHHHhCCCEEEEEecCccH
Q 001270 676 ASSQLLLR-ALRREALEGVNICLVVHQPSY 704 (1111)
Q Consensus 676 ~s~~~Il~-~L~~la~~G~TVIivtHq~~~ 704 (1111)
.....+.. +++++.+.|.|+|++||+++.
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~~ 150 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLEL 150 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHH
Confidence 99987754 678887779999999999874
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.75 E-value=5.4e-18 Score=190.74 Aligned_cols=181 Identities=27% Similarity=0.433 Sum_probs=137.2
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC------CCCceeEEEECCeeCCcccccccEEEEccCCCC-C
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAI------ACKATGLILINGKNEPIHSYKKIIGFVPQDDIV-H 588 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~------~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l-~ 588 (1111)
..+|+|||++|++|++++|+|+|||||||||++|+|... +.|++|.|.+--.. ..+++|-+... |
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f 467 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPEF 467 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCccccccc
Confidence 468999999999999999999999999999999999542 24677777653211 23455554321 2
Q ss_pred CCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc-c-cccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001270 589 GNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV-R-DSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLL 666 (1111)
Q Consensus 589 ~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-~-d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLL 666 (1111)
..-|+.|.+.-- ..+. ....++++..||.+- + -+. .+.||-|||.|+.||.++...|.+++.
T Consensus 468 ~~~tilehl~s~-----tGD~------~~AveILnraGlsDAvlyRr~-----f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 468 GEVTILEHLRSK-----TGDL------NAAVEILNRAGLSDAVLYRRK-----FSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred CchhHHHHHhhc-----cCch------hHHHHHHHhhccchhhhhhcc-----HhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 345666666321 0111 124678999999653 2 222 345999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHh-cCeEEEEeCCcE
Q 001270 667 DEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRM-FDDLVLLAKGGL 721 (1111)
Q Consensus 667 DEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~-~D~vilL~~GG~ 721 (1111)
||--+.||+.++..+.+-|.+++++ |.|++++||+++.. -.+ -|.++++.-|+.
T Consensus 532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~-~AL~PD~li~vgYg~v 587 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVG-NALRPDTLILVGYGKV 587 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHH-hccCCceeEEeecccc
Confidence 9999999999999999999999865 99999999999753 344 588888877654
No 405
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=6.1e-18 Score=188.00 Aligned_cols=76 Identities=22% Similarity=0.357 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe
Q 001270 642 GISGGQRKRVHVGLEMVM----EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 642 gLSGGQrQRVaIArALl~----~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~ 717 (1111)
.|||||+||++||++++. +|+++||||||++||+.....+++.|+++.+ +.|+|++||++. +...+|++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997664 9999999999999999999999999998754 789999999986 347999999998
Q ss_pred CCc
Q 001270 718 KGG 720 (1111)
Q Consensus 718 ~GG 720 (1111)
+++
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 764
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.72 E-value=4.2e-17 Score=167.52 Aligned_cols=74 Identities=27% Similarity=0.504 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeC
Q 001270 643 ISGGQRKRVHVGLEMVM----EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAK 718 (1111)
Q Consensus 643 LSGGQrQRVaIArALl~----~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~ 718 (1111)
||+||+||++||++|+. +|+++|+|||++|||+.....+.+.|.++..+|.++|++||+++. .+.+|+++.|..
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~--~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPEL--AELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH--HHhhhhEEEEEE
Confidence 89999999999999997 789999999999999999999999999886668899999999864 467899999864
No 407
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.70 E-value=2.2e-17 Score=190.04 Aligned_cols=186 Identities=22% Similarity=0.351 Sum_probs=135.2
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|.++|+-+--+. ...++..+||.|++|--+.|+||||||||+|+++|+|+-+ ...|...+ + ...+|-|
T Consensus 481 gI~lenIpvItP~-~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP--vy~g~L~~------P--~~~~mFY 549 (728)
T KOG0064|consen 481 GIILENIPVITPA-GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP--VYNGLLSI------P--RPNNIFY 549 (728)
T ss_pred ceEEecCceeccC-cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCc--ccCCeeec------C--CCcceEe
Confidence 4778888877654 4568999999999999999999999999999999999754 23333322 1 1345999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhh--ccccchHHHHHHHHHHHHHHcCCCccccccccC----ccCCCCCHHHHHHHHHH
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCR--LSAHLAKADKVLVIERVIDTLGLQTVRDSLVGT----VEKRGISGGQRKRVHVG 654 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~--~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~----~~~rgLSGGQrQRVaIA 654 (1111)
+||.|.+- .-|.+|.+-+....- ..++..+.+ .+.+|+.+.|++...+-.|= .....||||||||+++|
T Consensus 550 IPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~d----L~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mA 624 (728)
T KOG0064|consen 550 IPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQD----LEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMA 624 (728)
T ss_pred ccCCCccC-cCcccceeecCCcHHHHHhcCCCHHH----HHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHH
Confidence 99999776 458888876642110 011222222 34455555554443332210 01224999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHH
Q 001270 655 LEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYA 705 (1111)
Q Consensus 655 rALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~ 705 (1111)
|.+.++|+.-+|||-||+..+..+..+.+..+. -|.+.|-+||+|+.-
T Consensus 625 Rm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpslw 672 (728)
T KOG0064|consen 625 RMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSLW 672 (728)
T ss_pred HHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccHH
Confidence 999999999999999999999988888887765 489999999999853
No 408
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.1e-17 Score=188.16 Aligned_cols=222 Identities=25% Similarity=0.354 Sum_probs=157.2
Q ss_pred ceEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-------
Q 001270 499 LIEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI------- 571 (1111)
Q Consensus 499 ~i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~------- 571 (1111)
.++|.++|.+.+- ..+.++.|-|+.|-.|..++|+||||-||||||+-|+.+...-|..=.|++..+.+-.
T Consensus 262 a~DIKiEnF~ISA--~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~ 339 (807)
T KOG0066|consen 262 AMDIKIENFDISA--QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAID 339 (807)
T ss_pred cccceeeeeeeec--ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHH
Confidence 4678889888877 4567899999999999999999999999999999999864433333445554433200
Q ss_pred ---ccccccEEEEccCCC-----CCCCCCHHHHHHHH-HHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 001270 572 ---HSYKKIIGFVPQDDI-----VHGNLTVEENLWFH-ARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRG 642 (1111)
Q Consensus 572 ---~~~r~~IgyV~Qd~~-----l~~~LTV~EnL~f~-a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rg 642 (1111)
..-.++..++-.+.. --...|+.|-|.-. ..++.. ......+++.++|.-||.+.-...++.+ .
T Consensus 340 tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELrai---GA~sAEarARRILAGLGFskEMQ~rPt~----k 412 (807)
T KOG0066|consen 340 TVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAI---GADSAEARARRILAGLGFSKEMQERPTT----K 412 (807)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHh---ccccchhHHHHHHhhcCCChhHhcCCcc----c
Confidence 001122222222221 12345777666432 222211 1112235678899999997554333332 4
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEE
Q 001270 643 ISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLT 722 (1111)
Q Consensus 643 LSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~i 722 (1111)
+|||-|-||++||||..+|-+|.|||||+.||......+-+.|+.+ .+|.+||+||..+ +-..|.+||.|++...-
T Consensus 413 FSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW---kKTLLIVSHDQgF-LD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 413 FSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQGF-LDSVCTDIIHLDNQKLH 488 (807)
T ss_pred cCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh---hheeEEEecccch-HHHHHHHHhhhhhhhhh
Confidence 9999999999999999999999999999999999888888888776 4699999999886 56789999999887666
Q ss_pred EEecCHhhHHH
Q 001270 723 VYHGSVKKVEE 733 (1111)
Q Consensus 723 v~~G~~~~l~~ 733 (1111)
.|.|+..-...
T Consensus 489 yYrGNY~~FKK 499 (807)
T KOG0066|consen 489 YYRGNYTLFKK 499 (807)
T ss_pred hhcchHHHHHH
Confidence 77888654433
No 409
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.70 E-value=3.2e-17 Score=177.07 Aligned_cols=153 Identities=19% Similarity=0.202 Sum_probs=112.6
Q ss_pred cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE-EEccCCCCCCCCCH
Q 001270 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG-FVPQDDIVHGNLTV 593 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig-yV~Qd~~l~~~LTV 593 (1111)
.+.+.+|+++++.+|++++|.||||+||||||++|+-. .+..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~---- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP---- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe----
Confidence 45689999999999999999999999999999999831 1122344 5555432221
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC--
Q 001270 594 EENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM--VMEPSLLLLDEP-- 669 (1111)
Q Consensus 594 ~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL--l~~P~lLLLDEP-- 669 (1111)
.+++++..+|+.+.. . +++|.|++|++.+++++ +.+|+++|||||
T Consensus 72 -----------------------~~~~il~~~~l~d~~---~-----~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~ 120 (222)
T cd03285 72 -----------------------IVDCILARVGASDSQ---L-----KGVSTFMAEMLETAAILKSATENSLIIIDELGR 120 (222)
T ss_pred -----------------------ccceeEeeeccccch---h-----cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcC
Confidence 123344556665332 2 35999999999999999 899999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 670 -TSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 670 -TSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
|++||+.+.... .++.+.+ .|.++|++||+. ++.+++|++..+.+ |++.+.+.
T Consensus 121 gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~~--el~~~~~~~~~i~~-g~~~~~~~ 175 (222)
T cd03285 121 GTSTYDGFGLAWA--IAEYIATQIKCFCLFATHFH--ELTALADEVPNVKN-LHVTALTD 175 (222)
T ss_pred CCChHHHHHHHHH--HHHHHHhcCCCeEEEEechH--HHHHHhhcCCCeEE-EEEEEEEe
Confidence 999999887543 3344443 488999999973 46689999988876 56665543
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.67 E-value=3.7e-16 Score=197.24 Aligned_cols=136 Identities=25% Similarity=0.398 Sum_probs=108.8
Q ss_pred CCCCHHHHHHHHHHhhcccc---ch---HHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 001270 589 GNLTVEENLWFHARCRLSAH---LA---KADKVLVIERVIDTLGLQTV-RDSLVGTVEKRGISGGQRKRVHVGLEMVMEP 661 (1111)
Q Consensus 589 ~~LTV~EnL~f~a~~~~~~~---~~---~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~rgLSGGQrQRVaIArALl~~P 661 (1111)
..+||.|.+.|...+..+.. .. ..+...+++ .++.+||.+. .|+.+.+ |||||+|||.||++|+.+|
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~-----LSgGE~QRv~LA~aL~~~~ 508 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSGL 508 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhh-----CCHHHHHHHHHHHHHhhCC
Confidence 36899999998544322111 00 112223443 6788899876 6887766 9999999999999999997
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe-----CCcEEEEecCHhhHH
Q 001270 662 --SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA-----KGGLTVYHGSVKKVE 732 (1111)
Q Consensus 662 --~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~-----~GG~iv~~G~~~~l~ 732 (1111)
++|||||||+|||+.....++++|++++++|.|||+|+|+++. + ..+|++++|. +||++++.|+++++.
T Consensus 509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 9999999999999999999999999998889999999999875 3 5799999992 457899999998874
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=6e-16 Score=195.00 Aligned_cols=135 Identities=24% Similarity=0.375 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHhhccccchH------HHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCC-
Q 001270 590 NLTVEENLWFHARCRLSAHLAK------ADKVLVIERVIDTLGLQTV-RDSLVGTVEKRGISGGQRKRVHVGLEMVMEP- 661 (1111)
Q Consensus 590 ~LTV~EnL~f~a~~~~~~~~~~------~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~rgLSGGQrQRVaIArALl~~P- 661 (1111)
.|||.|.+.|...+........ .+...++ +.+..+||... .++.+.+ |||||+|||.||++|+.+|
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~t-----LSGGE~QRv~LA~aL~~~~~ 507 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGT-----LSGGEAQRIRLATQIGSGLT 507 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCc-----CCHHHHHHHHHHHHHhhCCC
Confidence 6899999988765422210000 1111222 34667788765 5776655 9999999999999999986
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe-----CCcEEEEecCHhhHH
Q 001270 662 -SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA-----KGGLTVYHGSVKKVE 732 (1111)
Q Consensus 662 -~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~-----~GG~iv~~G~~~~l~ 732 (1111)
++|||||||+|||+.+...++++|++++++|.|||+|+|+++. + ..+|++++|. +||++++.|+++++.
T Consensus 508 ~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~-i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEET-I-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-H-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 8999999999999999999999999998889999999999874 3 6899999993 467899999998863
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.63 E-value=3.4e-16 Score=166.10 Aligned_cols=154 Identities=16% Similarity=0.149 Sum_probs=100.6
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHH
Q 001270 521 CVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFH 600 (1111)
Q Consensus 521 ~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~ 600 (1111)
..++++.+|++++|+|||||||||||++|++.... ...|.. .. ..+..+++..|.. ..+...++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~------~~--~~~~~i~~~dqi~---~~~~~~d~---- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCF------VP--AESASIPLVDRIF---TRIGAEDS---- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCC------cc--ccccccCCcCEEE---EEecCccc----
Confidence 44556668999999999999999999999963210 111211 00 0122344433221 11111111
Q ss_pred HHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 001270 601 ARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQL 680 (1111)
Q Consensus 601 a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~ 680 (1111)
.....+ .++++++| +..+.+++.+|+++||||||+|||+.....
T Consensus 85 ------------------------------i~~~~s-----~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~ 128 (202)
T cd03243 85 ------------------------------ISDGRS-----TFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLA 128 (202)
T ss_pred ------------------------------ccCCce-----eHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHH
Confidence 111112 25666655 777788899999999999999999998888
Q ss_pred HHH-HHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 681 LLR-ALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 681 Il~-~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
+.. +++.+.+.+.++|++||+++ +.+.++++..+..+ .+...++..
T Consensus 129 l~~~ll~~l~~~~~~vi~~tH~~~--~~~~~~~~~~l~~~-~~~~~~~~~ 175 (202)
T cd03243 129 IAYAVLEHLLEKGCRTLFATHFHE--LADLPEQVPGVKNL-HMEELITTG 175 (202)
T ss_pred HHHHHHHHHHhcCCeEEEECChHH--HHHHhhcCCCeEEE-EEEEEecCC
Confidence 765 46666667899999999975 45788888888764 666666543
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.63 E-value=5.6e-16 Score=165.48 Aligned_cols=137 Identities=20% Similarity=0.212 Sum_probs=99.8
Q ss_pred cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE-EEccCCCCCCCCCH
Q 001270 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG-FVPQDDIVHGNLTV 593 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig-yV~Qd~~l~~~LTV 593 (1111)
++.+.+|+++++++|++++|+||||+|||||+++|++... ..++| || +..+..+++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~--------------------la~~G~~v---pa~~~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI--------------------MAQIGCFV---PAEYATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH--------------------HHHcCCCc---chhhcCccC
Confidence 4578999999999999999999999999999999998431 11122 22 333455667
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001270 594 EENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGL 673 (1111)
Q Consensus 594 ~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGL 673 (1111)
.|+|... ++..+..++..+ .+|+|++|+ ..+.+++.+|+++|||||++|+
T Consensus 72 ~d~I~~~------------------------~~~~d~~~~~~S-----~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt 121 (204)
T cd03282 72 FNRLLSR------------------------LSNDDSMERNLS-----TFASEMSET-AYILDYADGDSLVLIDELGRGT 121 (204)
T ss_pred hhheeEe------------------------cCCccccchhhh-----HHHHHHHHH-HHHHHhcCCCcEEEeccccCCC
Confidence 7766432 122211222222 389999975 5667789999999999999999
Q ss_pred CHHHHHHHH-HHHHHHHhCCCEEEEEecCccH
Q 001270 674 DSASSQLLL-RALRREALEGVNICLVVHQPSY 704 (1111)
Q Consensus 674 D~~s~~~Il-~~L~~la~~G~TVIivtHq~~~ 704 (1111)
|+.....+. ..++.+.+.|.++|++||+.+.
T Consensus 122 ~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l 153 (204)
T cd03282 122 SSADGFAISLAILECLIKKESTVFFATHFRDI 153 (204)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 997766654 4677777779999999999764
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=1.1e-14 Score=161.70 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhc--
Q 001270 642 GISGGQRKRVHVGLEMV---------MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMF-- 710 (1111)
Q Consensus 642 gLSGGQrQRVaIArALl---------~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~-- 710 (1111)
-+|+||||+++||++|+ .+|+++||||||++||+..+..+.+.|+++ + .+++++|+... +...+
T Consensus 183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~-q~ii~~~~~~~-~~~~~~~ 257 (270)
T cd03242 183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---V-QTFVTTTDLAD-FDALWLR 257 (270)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---C-CEEEEeCCchh-ccchhcc
Confidence 37999999999999985 799999999999999999999999999765 2 35555555432 33455
Q ss_pred -CeEEEEeCC
Q 001270 711 -DDLVLLAKG 719 (1111)
Q Consensus 711 -D~vilL~~G 719 (1111)
++++.+.+|
T Consensus 258 ~~~i~~l~~g 267 (270)
T cd03242 258 RAQIFRVDAG 267 (270)
T ss_pred CccEEEEeCc
Confidence 567778654
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.52 E-value=3.6e-14 Score=152.87 Aligned_cols=159 Identities=21% Similarity=0.138 Sum_probs=104.5
Q ss_pred cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 001270 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVE 594 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 594 (1111)
.+.+.+|++++..+ ++++|+||||+||||||++|++.... |+ .|..... .+..++++.| +++.+++.
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~--~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA--SKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc--ccceecceee---EeccCCch
Confidence 34689999999987 99999999999999999999874321 11 1222221 2356788765 56677887
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC---CC
Q 001270 595 ENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP---TS 671 (1111)
Q Consensus 595 EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEP---TS 671 (1111)
|++..+.... ..|.++++.+.+.+.+|+++||||| |+
T Consensus 84 ~~ls~g~s~f----------------------------------------~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 84 DDLAGGRSTF----------------------------------------MVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred hhhccCcchH----------------------------------------HHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 7775431100 0222333333334579999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 672 GLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 672 GLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+||.... ...+++.+.+. +.++|++||+.+ +.+++|++..+.+ +.+...+..+++
T Consensus 124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~~--l~~l~~~~~~v~~-~~~~~~~~~~~l 179 (216)
T cd03284 124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYHE--LTELEGKLPRVKN-FHVAVKEKGGGV 179 (216)
T ss_pred hHHHHHH--HHHHHHHHHhccCCcEEEEeCcHH--HHHHhhcCCCeEE-EEEEEEeeCCeE
Confidence 8887652 23344445555 889999999964 5577887766655 455555544443
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.51 E-value=7.8e-14 Score=158.13 Aligned_cols=177 Identities=26% Similarity=0.339 Sum_probs=132.6
Q ss_pred ceeEeeeEEEEeCC-----eEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCC
Q 001270 516 KHLLRCVTGKIRPG-----RITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGN 590 (1111)
Q Consensus 516 k~IL~~VS~~I~~G-----eivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~ 590 (1111)
+..+.+..+.|+.| |++..+|.||.|||||+++|+|++.+. ..|+|-. -.++|=||...--..
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd-~~~e~p~-----------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD-EGGEIPV-----------LNVSYKPQKISPKRE 416 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC-ccCcccc-----------cceeccccccCcccc
Confidence 44677777777777 578999999999999999999976532 2233321 236777776443335
Q ss_pred CCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001270 591 LTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPT 670 (1111)
Q Consensus 591 LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPT 670 (1111)
-||++.+.--.+ . .. ....-+.++++-|.+++..|.-+. +|||||.|||+||..|-..+++.+.|||.
T Consensus 417 ~tvR~ll~~kIr--~-ay----~~pqF~~dvmkpL~ie~i~dqevq-----~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTKIR--D-AY----MHPQFVNDVMKPLQIENIIDQEVQ-----GLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHHhH--h-hh----cCHHHHHhhhhhhhHHHHHhHHhh-----cCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 588887643211 1 11 112346788888888888887665 49999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCeEEEEe
Q 001270 671 SGLDSASSQLLLRALRREA-LEGVNICLVVHQPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 671 SGLD~~s~~~Il~~L~~la-~~G~TVIivtHq~~~~i~~~~D~vilL~ 717 (1111)
+-||++.+..--+.+++.. +.++|-.+|.||.-.+. -++||+++..
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfImaT-Yladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMAT-YLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH-hhcceeEEEe
Confidence 9999999999888888864 55889999999965443 3677777764
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.49 E-value=9e-14 Score=154.38 Aligned_cols=140 Identities=26% Similarity=0.295 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhc
Q 001270 530 RITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRL 605 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~ 605 (1111)
.-++|+||||||||||+++|+|.+. +.+|+|.++|+++.. .++.+.+++++|++ +...++|.||..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch-------
Confidence 5789999999999999999999775 578999999988631 24455678888865 334556655421
Q ss_pred cccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 001270 606 SAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRAL 685 (1111)
Q Consensus 606 ~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L 685 (1111)
+.+ |+ ....+.++|+++++|||++ ...+..++
T Consensus 182 -----k~~--------------------------------~~-----~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 -----KAE--------------------------------GM-----MMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred -----HHH--------------------------------HH-----HHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 000 11 1222236999999999974 23344444
Q ss_pred HHHHhCCCEEEEEecCccHHHH------------HhcCeEEEEeCCcEEEEecCHhhH
Q 001270 686 RREALEGVNICLVVHQPSYALF------------RMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 686 ~~la~~G~TVIivtHq~~~~i~------------~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+.+ ++|.+||+++|+++.... .+||++++|+++ + ..|.++++
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~-~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRR-K--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecC-C--CCCceeec
Confidence 443 469999999998664222 568999999864 2 45555443
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.39 E-value=2.2e-13 Score=143.03 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCccHHHHHhcCe
Q 001270 643 ISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLL-RALRREALE-GVNICLVVHQPSYALFRMFDD 712 (1111)
Q Consensus 643 LSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il-~~L~~la~~-G~TVIivtHq~~~~i~~~~D~ 712 (1111)
+|+|++|...+.+ .+.+|+++|+|||++|+|+.....+. ..++.+.++ +.++|++||+++ +.+.+|+
T Consensus 62 fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~--l~~~~~~ 130 (185)
T smart00534 62 FMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE--LTKLADE 130 (185)
T ss_pred HHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHHHhhc
Confidence 7888776433333 24599999999999999999887765 556667664 889999999975 4566664
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.37 E-value=9.7e-13 Score=164.49 Aligned_cols=133 Identities=20% Similarity=0.281 Sum_probs=91.6
Q ss_pred eEEEEeCC-eEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHH
Q 001270 522 VTGKIRPG-RITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFH 600 (1111)
Q Consensus 522 VS~~I~~G-eivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~ 600 (1111)
+|+.+.+| ++++|.||||+||||||++|+|.... +..| .+||..... .+.+.+.+..
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G------------------~~Vpa~~~~--~~~~~d~i~~- 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG------------------IPIPANEHS--EIPYFEEIFA- 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC------------------CCccCCccc--cccchhheee-
Confidence 78889887 99999999999999999999985210 1222 133333210 0111111110
Q ss_pred HHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 001270 601 ARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQL 680 (1111)
Q Consensus 601 a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~ 680 (1111)
.+... +.+. ..+ ..+|+|+++++.|++.+ .+|+++|||||++|+|+.....
T Consensus 372 -------~i~~~------~si~----------~~L-----StfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~a 422 (771)
T TIGR01069 372 -------DIGDE------QSIE----------QNL-----STFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSA 422 (771)
T ss_pred -------ecChH------hHHh----------hhh-----hHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHH
Confidence 00000 0011 111 23899999999998876 8999999999999999999998
Q ss_pred H-HHHHHHHHhCCCEEEEEecCccHH
Q 001270 681 L-LRALRREALEGVNICLVVHQPSYA 705 (1111)
Q Consensus 681 I-l~~L~~la~~G~TVIivtHq~~~~ 705 (1111)
+ ..+|..+.+.|.++|++||+.+..
T Consensus 423 la~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 423 LAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHHHHHHhcCCEEEEECChHHHH
Confidence 8 567777877899999999997654
No 420
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.37 E-value=1e-13 Score=144.30 Aligned_cols=197 Identities=23% Similarity=0.249 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHhhcchhhH-HHHHHHHHHHHHHHhhcccC-C--ccccchhhHHHHHHHHHH-HHhhhhHHHHHHHHH
Q 001270 860 QQYRFFLGRVAKQRLREAKPQ-AVDFLILLLAGACLGSLSKV-G--DENFGAAGYSHTIIAVSL-LCKIAALRTFSLEKL 934 (1111)
Q Consensus 860 ~Q~~~Ll~R~~~q~~Rd~~~~-~~~~~~~ll~Gl~lG~l~~~-~--~~~~g~~g~~f~via~~l-l~~i~al~~F~~ER~ 934 (1111)
||++.+++|.+++.+||+... ...++..++.++++|.++.. + ++.....+..+..+.... ....+....+..|+.
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGFNRPGLIFGSIIFSFFSSISGSSISFERERG 80 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeehhhHHhhhhhcccchhhhhhhcc
Confidence 699999999999999999888 78888888888888877642 2 222223333333333332 233444477889999
Q ss_pred HHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHhcC-chh
Q 001270 935 QYWRERASGMSS-LAYFLAKDTIDHFNTVIKPVVYLSMFYFFTNPRSS-FADNYAVLLCLVYCVTGIAYALAIFFE-PGS 1011 (1111)
Q Consensus 935 vf~REr~sG~y~-~aYflAk~l~dlp~~ii~piif~si~Yfm~glr~~-~~~~f~~~lll~~~~~~l~~~l~i~~~-~~~ 1011 (1111)
.+.||+.+++|+ .+|.++|.+.+++..++..+++..+.|++.|++.+ +...++.+++..++..+++..++.... ...
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~ 160 (210)
T PF01061_consen 81 TLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFESFFLFLLILLLSILCSSGLGLLLAALFPSFRD 160 (210)
T ss_pred ccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccccchheecccccccccccccccccccchhhhhh
Confidence 999999999964 69999999999999999999999999999888775 222223333333444556666554432 223
Q ss_pred HHHHHHHHHHHhh----hhccCCcccchhhccccccHHHHHHHHHHHhc
Q 001270 1012 AQLWSVLLPVVLT----LIATRKTDSEFMKNIANLCYPKWALQAFVVAN 1056 (1111)
Q Consensus 1012 a~l~~~l~p~~~~----l~~~~~~iP~~l~Wl~yiS~~rYa~eal~ine 1056 (1111)
++....++..+++ .+.+.+.+|.|++|+.|++|.+|++|++..++
T Consensus 161 ~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~ 209 (210)
T PF01061_consen 161 ASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAAL 209 (210)
T ss_pred hhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222222222 34567889999999999999999999987664
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.36 E-value=3.1e-13 Score=144.68 Aligned_cols=74 Identities=24% Similarity=0.394 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe
Q 001270 642 GISGGQRKRVHVGLEMV----MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 642 gLSGGQrQRVaIArALl----~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~ 717 (1111)
.||||||.+++||.-|+ ...+++|||||.++||...+..+.++|+++.+ +.-+|++||++. ++..+|+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~~--~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNPE--MFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-HH--HHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc--cccccccccccc
Confidence 39999999999997764 57899999999999999999999999998764 477999999965 568899887764
Q ss_pred C
Q 001270 718 K 718 (1111)
Q Consensus 718 ~ 718 (1111)
.
T Consensus 213 ~ 213 (220)
T PF02463_consen 213 M 213 (220)
T ss_dssp E
T ss_pred c
Confidence 3
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.36 E-value=3.9e-12 Score=136.82 Aligned_cols=133 Identities=18% Similarity=0.156 Sum_probs=88.0
Q ss_pred eEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCC-CCCHHHH
Q 001270 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHG-NLTVEEN 596 (1111)
Q Consensus 518 IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~-~LTV~En 596 (1111)
|-.|+++.=..+.+++|.||||+|||||||.|+..... ...|...... .-.++|..|....+. ..++.++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--------~~~~~~~d~i~~~l~~~~si~~~ 88 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--------SATIGLVDKIFTRMSSRESVSSG 88 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--------CcEEeeeeeeeeeeCCccChhhc
Confidence 44455443222389999999999999999999842110 2335443321 234677777532221 1122111
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 001270 597 LWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGIS--GGQRKRVHVGLEMVMEPSLLLLDEPTSGLD 674 (1111)
Q Consensus 597 L~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLS--GGQrQRVaIArALl~~P~lLLLDEPTSGLD 674 (1111)
+| .-|-||++++++++.+|+++|||||++|+|
T Consensus 89 ----------------------------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 89 ----------------------------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred ----------------------------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 12 356789999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHhC---CCEEEEEecCccHH
Q 001270 675 SASSQLL-LRALRREALE---GVNICLVVHQPSYA 705 (1111)
Q Consensus 675 ~~s~~~I-l~~L~~la~~---G~TVIivtHq~~~~ 705 (1111)
+.....+ ...|+++.+. +.++|++||+++..
T Consensus 123 ~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~ 157 (213)
T cd03281 123 TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELF 157 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHH
Confidence 9765544 5678887654 34899999997643
No 423
>PRK00064 recF recombination protein F; Reviewed
Probab=99.35 E-value=2.5e-11 Score=140.38 Aligned_cols=74 Identities=26% Similarity=0.365 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhc--
Q 001270 642 GISGGQRKRVHVGLEMV---------MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMF-- 710 (1111)
Q Consensus 642 gLSGGQrQRVaIArALl---------~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~-- 710 (1111)
.+|+||+|++.||+.|+ .+|+|||||||+++||+..+..+++.|.++ +..+++++|++.. +...+
T Consensus 273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~~~ 348 (361)
T PRK00064 273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLLEN 348 (361)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhhcc
Confidence 48999999999999886 799999999999999999999999988754 4578999998753 33333
Q ss_pred CeEEEEeCC
Q 001270 711 DDLVLLAKG 719 (1111)
Q Consensus 711 D~vilL~~G 719 (1111)
++++.|.+|
T Consensus 349 ~~i~~v~~G 357 (361)
T PRK00064 349 AKIFHVEQG 357 (361)
T ss_pred CcEEEEeCC
Confidence 467778764
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.29 E-value=8.8e-12 Score=141.75 Aligned_cols=165 Identities=28% Similarity=0.330 Sum_probs=117.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEE----------------------ccC
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV----------------------PQD 584 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV----------------------~Qd 584 (1111)
.+|++.+++|.||-||||-|++|+|..++. -|.- + ....|...++|- ||.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpn--lg~~-----~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQy 169 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPN--LGRY-----D-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQY 169 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCC--CCCC-----C-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHH
Confidence 589999999999999999999999987542 1210 0 001111111111 111
Q ss_pred CCCCC---CCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC
Q 001270 585 DIVHG---NLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEP 661 (1111)
Q Consensus 585 ~~l~~---~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P 661 (1111)
...+| ..+|.++|. ........+++++.+.|+...++-+.. |||||-||.+||.+.+.+.
T Consensus 170 vd~ipr~~k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~~-----lsggelqrfaia~~~vq~a 232 (592)
T KOG0063|consen 170 VDQIPRAVKGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVEQ-----LSGGELQRFAIAMVCVQKA 232 (592)
T ss_pred HHHHHHHHHHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhhh-----cccchhhhhhhhhhhhhhc
Confidence 11011 112222221 112222457788889999888887765 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe
Q 001270 662 SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 662 ~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~ 717 (1111)
++.++|||.+-||...+..-...|+.+.....=||+|.||++. +--+.|-+..|-
T Consensus 233 dvyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLY 287 (592)
T KOG0063|consen 233 DVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLY 287 (592)
T ss_pred ceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEe
Confidence 9999999999999999999999999998888999999999984 334566666664
No 425
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.29 E-value=4.5e-12 Score=122.22 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=61.6
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccccEEEEccCCCCCCCCC
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKIIGFVPQDDIVHGNLT 592 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~IgyV~Qd~~l~~~LT 592 (1111)
+.+|+++++++++||+++|+||||||||||+++|. +|+|.++|.++. ....++.+++++|+ ++ ..|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EIR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hhh
Confidence 46899999999999999999999999999999986 588999998752 33456678888887 33 459
Q ss_pred HHHHHHH
Q 001270 593 VEENLWF 599 (1111)
Q Consensus 593 V~EnL~f 599 (1111)
++|||.+
T Consensus 71 i~~Ni~~ 77 (107)
T cd00820 71 LRLNIFL 77 (107)
T ss_pred HHhhcee
Confidence 9999987
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.24 E-value=5.4e-11 Score=128.93 Aligned_cols=137 Identities=16% Similarity=0.187 Sum_probs=87.2
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEE 595 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 595 (1111)
+.+.+|+++.+.+|++++|+||||+||||||++|++... .+..|...... . -.++|..|= +..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~-la~~G~~v~a~-~-------~~~~~~~~i---~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITI-MAQIGSFVPAS-S-------ATLSIFDSV---LTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHH-HHhCCCEEEcC-c-------eEEeccceE---EEEecCcc
Confidence 468999999999999999999999999999999999432 13456543321 1 113332221 11111111
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001270 596 NLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDS 675 (1111)
Q Consensus 596 nL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~ 675 (1111)
++.- |+. -=..|-+|++-...-+.+++++|||||.+|.|+
T Consensus 86 ~~~~--------------------------~~S--------------tF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~ 125 (222)
T cd03287 86 SIQH--------------------------GMS--------------TFMVELSETSHILSNCTSRSLVILDELGRGTST 125 (222)
T ss_pred cccc--------------------------ccc--------------hHHHHHHHHHHHHHhCCCCeEEEEccCCCCCCh
Confidence 1110 000 001233333333444568999999999999987
Q ss_pred HHHHHH-HHHHHHHHhC-CCEEEEEecCccH
Q 001270 676 ASSQLL-LRALRREALE-GVNICLVVHQPSY 704 (1111)
Q Consensus 676 ~s~~~I-l~~L~~la~~-G~TVIivtHq~~~ 704 (1111)
.....+ ...++.+.+. +.++|++||+++.
T Consensus 126 ~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l 156 (222)
T cd03287 126 HDGIAIAYATLHYLLEEKKCLVLFVTHYPSL 156 (222)
T ss_pred hhHHHHHHHHHHHHHhccCCeEEEEcccHHH
Confidence 776664 4567777665 8899999999864
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.22 E-value=1.9e-11 Score=130.45 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 001270 646 GQRKRVHVGLEMVMEPSLLLLDEPT-----SGLDSASSQLLLRALRREAL 690 (1111)
Q Consensus 646 GQrQRVaIArALl~~P~lLLLDEPT-----SGLD~~s~~~Il~~L~~la~ 690 (1111)
-|++++.||++++.+|+++++|||| +|||+.++..+++.|+++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999864
No 428
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.15 E-value=6.9e-11 Score=143.51 Aligned_cols=76 Identities=26% Similarity=0.443 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh
Q 001270 641 RGISGGQRKRVHVGLEMV----------MEPSLLLLDEPT-SGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRM 709 (1111)
Q Consensus 641 rgLSGGQrQRVaIArALl----------~~P~lLLLDEPT-SGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~ 709 (1111)
..||||||||++||++|+ .+|++||||||| ++||+.+...+.+.|+++ .|.|||++||++.. ...
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~--~~~ 542 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHD--PQK 542 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhc--hhh
Confidence 459999999999999887 599999999998 789999999999999988 58899999999753 477
Q ss_pred cCeEEEEeCCc
Q 001270 710 FDDLVLLAKGG 720 (1111)
Q Consensus 710 ~D~vilL~~GG 720 (1111)
+|++++|.+.|
T Consensus 543 ~d~~~~l~~~~ 553 (562)
T PHA02562 543 FDRHLKMEKVG 553 (562)
T ss_pred hhcEEEEEEEC
Confidence 99999998743
No 429
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.15 E-value=4.3e-11 Score=150.21 Aligned_cols=73 Identities=22% Similarity=0.194 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCccHHHHHhcCeEEEE
Q 001270 642 GISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLR-ALRREALEGVNICLVVHQPSYALFRMFDDLVLL 716 (1111)
Q Consensus 642 gLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~-~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL 716 (1111)
.+|+||+|++.|++++ .+|+++|||||++|+|+.....+.. +|..+.+.|.++|++||+++... ...++..++
T Consensus 390 tfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~-~~~~~~~v~ 463 (782)
T PRK00409 390 TFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKA-LMYNREGVE 463 (782)
T ss_pred HHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHH-HHhcCCCeE
Confidence 3899999999999998 8999999999999999999988865 56677777999999999976432 334444433
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.14 E-value=9.6e-11 Score=142.86 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEE
Q 001270 641 RGISGGQRKRVHVGLEMVME----PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLL 716 (1111)
Q Consensus 641 rgLSGGQrQRVaIArALl~~----P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL 716 (1111)
+.+||||+|||+||++++.. |++|||||||+|||+.++..+.+.|+++++ +++||+|||++.. ...+|++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~--~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQV--AAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHH--HHhcCeEEEE
Confidence 35899999999999999985 699999999999999999999999999874 8999999999864 3689999999
Q ss_pred eCC
Q 001270 717 AKG 719 (1111)
Q Consensus 717 ~~G 719 (1111)
.++
T Consensus 516 ~k~ 518 (563)
T TIGR00634 516 EKE 518 (563)
T ss_pred EEc
Confidence 864
No 431
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=1.7e-10 Score=149.76 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=71.3
Q ss_pred CCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh
Q 001270 640 KRGISGGQRKRVHVGLEMVM----------EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRM 709 (1111)
Q Consensus 640 ~rgLSGGQrQRVaIArALl~----------~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~ 709 (1111)
++.|||||++||+||+||+. +|++|||||||+|||+.+...++++|+++...|++|+||||++.. ...+
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~-~~~~ 1026 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF-RERI 1026 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH-HHhh
Confidence 34699999999999999986 799999999999999999999999999998789999999999876 4578
Q ss_pred cCeEEEEeCC
Q 001270 710 FDDLVLLAKG 719 (1111)
Q Consensus 710 ~D~vilL~~G 719 (1111)
+|+|+|+..+
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 8888888654
No 432
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.11 E-value=7.5e-10 Score=120.62 Aligned_cols=148 Identities=20% Similarity=0.230 Sum_probs=90.8
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHH-HHHHhcCCCCCCceeEEEECCeeCCcccccccE
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTF-LSALAGKAIACKATGLILINGKNEPIHSYKKII 578 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTL-LkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 578 (1111)
+.+.+++|...++++ +++|+++.|.|+||+||||| ++.+.+.... | ..+
T Consensus 6 ~~~~~~~ld~~l~gg-----------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~----g---------------~~~ 55 (230)
T PRK08533 6 IELSRDELHKRLGGG-----------IPAGSLILIEGDESTGKSILSQRLAYGFLQN----G---------------YSV 55 (230)
T ss_pred EEEEEeeeehhhCCC-----------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhC----C---------------CcE
Confidence 456677777766432 89999999999999999999 6888875321 1 113
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
.|+.. ..|..+.+.....+.. .. ++.... |.-...+-. ..+|+++.++..+.+.+-
T Consensus 56 ~yi~~------e~~~~~~~~~~~~~g~--~~---------~~~~~~-~~l~~~~~~------~~~~~~~~~~~~l~~il~ 111 (230)
T PRK08533 56 SYVST------QLTTTEFIKQMMSLGY--DI---------NKKLIS-GKLLYIPVY------PLLSGNSEKRKFLKKLMN 111 (230)
T ss_pred EEEeC------CCCHHHHHHHHHHhCC--ch---------HHHhhc-CcEEEEEec------ccccChHHHHHHHHHHHH
Confidence 44432 2244555544322111 11 111111 110011111 126777666655544433
Q ss_pred h----CCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 001270 659 M----EPSLLLLDEPTSGL----DSASSQLLLRALRREALEGVNICLVVHQ 701 (1111)
Q Consensus 659 ~----~P~lLLLDEPTSGL----D~~s~~~Il~~L~~la~~G~TVIivtHq 701 (1111)
. +|+++++||||+++ |+.....+++.++.++++|.|+++++|.
T Consensus 112 ~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~ 162 (230)
T PRK08533 112 TRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANP 162 (230)
T ss_pred HHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 3 69999999999999 8888889999999988778877665443
No 433
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.11 E-value=7.7e-11 Score=123.30 Aligned_cols=63 Identities=21% Similarity=0.412 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 001270 641 RGISGGQRKRVHVGLEMVMEP---SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPS 703 (1111)
Q Consensus 641 rgLSGGQrQRVaIArALl~~P---~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~ 703 (1111)
..+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+++.+.+.-||++||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 347999999999999988777 899999999999999999999999887665789999999985
No 434
>PRK10869 recombination and repair protein; Provisional
Probab=99.10 E-value=2.1e-10 Score=139.45 Aligned_cols=75 Identities=20% Similarity=0.350 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe
Q 001270 642 GISGGQRKRVHVGLEMVM----EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 642 gLSGGQrQRVaIArALl~----~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~ 717 (1111)
.+||||+|||+||++++. +|+++|||||++|||..++..+.+.|+++++ +.+||+|||+|.. ..++|+++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~~--~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQV--AGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH--HHhCCEEEEEe
Confidence 479999999999999997 5899999999999999999999999999864 6899999999863 47999999998
Q ss_pred CC
Q 001270 718 KG 719 (1111)
Q Consensus 718 ~G 719 (1111)
++
T Consensus 507 k~ 508 (553)
T PRK10869 507 KE 508 (553)
T ss_pred cc
Confidence 64
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.10 E-value=9.7e-10 Score=133.54 Aligned_cols=136 Identities=23% Similarity=0.404 Sum_probs=102.7
Q ss_pred CCCCHHHHHHHHHHhhccccchHHHHHHHHHHH------HHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhC-
Q 001270 589 GNLTVEENLWFHARCRLSAHLAKADKVLVIERV------IDTLGLQTV-RDSLVGTVEKRGISGGQRKRVHVGLEMVME- 660 (1111)
Q Consensus 589 ~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~v------L~~LGL~~~-~d~~vg~~~~rgLSGGQrQRVaIArALl~~- 660 (1111)
..|++.|.+.|...+.+... ........+.++ |-.+||+-. .++..+ .|||||.||+-||..+=.+
T Consensus 427 ~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~-----TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 427 SEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAG-----TLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred hhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcccccccCC-----CcChhHHHHHHHHHHhcccc
Confidence 35788888888766543221 111111222333 334577654 344444 4999999999999998764
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe-----CCcEEEEecCHhhHH
Q 001270 661 -PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA-----KGGLTVYHGSVKKVE 732 (1111)
Q Consensus 661 -P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~-----~GG~iv~~G~~~~l~ 732 (1111)
-=+++||||+-||-+..-..+++.|++|+..|-|+|+|.||.+ +.+.+|+++=|- +||.|++.|++++++
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~ 576 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELL 576 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHH
Confidence 3567999999999999999999999999999999999999965 568999999884 689999999999985
No 436
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.09 E-value=6.5e-11 Score=130.35 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=61.9
Q ss_pred CCCCCHHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEecCccHHHHHhc
Q 001270 640 KRGISGGQ--------RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQL-LLRALRREALEGVNICLVVHQPSYALFRMF 710 (1111)
Q Consensus 640 ~rgLSGGQ--------rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~-Il~~L~~la~~G~TVIivtHq~~~~i~~~~ 710 (1111)
++.+|||+ +||+++||++..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+++|++.. ...+
T Consensus 127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~ 200 (249)
T cd01128 127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIF 200 (249)
T ss_pred CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCC
Confidence 34589999 9999999999999999999 999999755544 54 45544467899999999864 4889
Q ss_pred CeEEEEeCCcE
Q 001270 711 DDLVLLAKGGL 721 (1111)
Q Consensus 711 D~vilL~~GG~ 721 (1111)
|.|.+|..|.+
T Consensus 201 paI~vl~s~sr 211 (249)
T cd01128 201 PAIDILKSGTR 211 (249)
T ss_pred CeEEEcCCCCc
Confidence 99999987643
No 437
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.06 E-value=3.2e-10 Score=122.66 Aligned_cols=138 Identities=18% Similarity=0.184 Sum_probs=89.6
Q ss_pred cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 001270 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVE 594 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 594 (1111)
++.+-+|+++.+++|++++|.||||+|||||++++++.... ...| -.+... ...++++ +.++..+...
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l-a~~G------~~vpa~--~~~i~~~---~~i~~~~~~~ 83 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM-AQMG------MDVPAK--SMRLSLV---DRIFTRIGAR 83 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH-HHcC------CccCcc--ccEeccc---cEEEEecCcc
Confidence 45789999999999999999999999999999999985321 0111 111111 1112222 1222222333
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 001270 595 ENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLD 674 (1111)
Q Consensus 595 EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD 674 (1111)
|++..+... + ..|-+|++-....+.+|+++|||||.+|+|
T Consensus 84 d~~~~~~St---------------------------------------F-~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~ 123 (218)
T cd03286 84 DDIMKGEST---------------------------------------F-MVELSETANILRHATPDSLVILDELGRGTS 123 (218)
T ss_pred cccccCcch---------------------------------------H-HHHHHHHHHHHHhCCCCeEEEEecccCCCC
Confidence 333211100 0 123344444444456899999999999999
Q ss_pred HHHHHHHHHH-HHHHHhC-CCEEEEEecCccH
Q 001270 675 SASSQLLLRA-LRREALE-GVNICLVVHQPSY 704 (1111)
Q Consensus 675 ~~s~~~Il~~-L~~la~~-G~TVIivtHq~~~ 704 (1111)
+.....+... ++.+.+. +.++|++||+++.
T Consensus 124 ~~dg~~la~ail~~L~~~~~~~~i~~TH~~el 155 (218)
T cd03286 124 THDGYAIAHAVLEYLVKKVKCLTLFSTHYHSL 155 (218)
T ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 9999988888 6777765 8999999999864
No 438
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.06 E-value=5.5e-10 Score=131.82 Aligned_cols=174 Identities=18% Similarity=0.229 Sum_probs=112.3
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC---C--------cccccccEEEEccC
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE---P--------IHSYKKIIGFVPQD 584 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~---~--------~~~~r~~IgyV~Qd 584 (1111)
..+++++ +.+.+|++++|+|+||+|||||+++|+|... +..|.|.+.|+.- . ...+++.|++|.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~--~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS--ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 4689999 9999999999999999999999999999764 5789999966432 1 12356789999875
Q ss_pred CCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc--cccccccCccCCCCCHHHHHH-HHHHHHHhhCC
Q 001270 585 DIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT--VRDSLVGTVEKRGISGGQRKR-VHVGLEMVMEP 661 (1111)
Q Consensus 585 ~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~--~~d~~vg~~~~rgLSGGQrQR-VaIArALl~~P 661 (1111)
+.-.. .+....+.+ . . +.+.+..-|.+- ..|..- .--|-+| +++ ++.+|
T Consensus 223 ~~~~~---~r~~~~~~a-------~------~-iAEyfr~~g~~Vll~~Dslt--------r~A~A~rEisl---~~ge~ 274 (438)
T PRK07721 223 DQPAL---MRIKGAYTA-------T------A-IAEYFRDQGLNVMLMMDSVT--------RVAMAQREIGL---AVGEP 274 (438)
T ss_pred CCCHH---HHHHHHHHH-------H------H-HHHHHHHCCCcEEEEEeChH--------HHHHHHHHHHH---hcCCC
Confidence 43210 111111111 0 0 111222223211 112111 0011111 111 11233
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 662 SLLLLDEPTSGLDSASSQLLLRALRREAL--EGV-----NICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 662 ~lLLLDEPTSGLD~~s~~~Il~~L~~la~--~G~-----TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
+ .|+|+|+.....+.++++++.. +|. ||++.+||++. ..+|++..+.+ |+++.+++..+
T Consensus 275 P------~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~d-G~Ivls~~la~ 340 (438)
T PRK07721 275 P------TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILD-GHFVLDRQLAN 340 (438)
T ss_pred C------ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecC-EEEEEeccHHH
Confidence 3 3789999999999999999873 575 99999999984 57999999987 58899888653
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.02 E-value=2.3e-09 Score=111.26 Aligned_cols=88 Identities=17% Similarity=0.106 Sum_probs=67.7
Q ss_pred cCCCccccccccCccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEE
Q 001270 625 LGLQTVRDSLVGTVEKRGISGGQRK------RVHVGLEMVMEPSLLLLDEPTSGLD---SASSQLLLRALRREALEGVNI 695 (1111)
Q Consensus 625 LGL~~~~d~~vg~~~~rgLSGGQrQ------RVaIArALl~~P~lLLLDEPTSGLD---~~s~~~Il~~L~~la~~G~TV 695 (1111)
.|+....+..+. .+|+|++| +.........+|+++++|||++.+| ...+..+.+.++.+++.|.|+
T Consensus 59 ~g~l~~~d~~~~-----~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tv 133 (187)
T cd01124 59 EGLLAIVDADPD-----EIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTT 133 (187)
T ss_pred cCCeEEEecCcc-----ccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEE
Confidence 454444444443 48999998 4555555667999999999999999 888888889999888889999
Q ss_pred EEEecCccH--------HHHHhcCeEEEEe
Q 001270 696 CLVVHQPSY--------ALFRMFDDLVLLA 717 (1111)
Q Consensus 696 IivtHq~~~--------~i~~~~D~vilL~ 717 (1111)
|+++|+... .+..++|.++.|.
T Consensus 134 i~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 134 LLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred EEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 999998653 1346788888886
No 440
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.98 E-value=5.6e-10 Score=144.81 Aligned_cols=78 Identities=26% Similarity=0.287 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcC
Q 001270 640 KRGISGGQRKRVHVGLEMVM--------EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFD 711 (1111)
Q Consensus 640 ~rgLSGGQrQRVaIArALl~--------~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D 711 (1111)
++.|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+...|+||+||||.... .-++-.
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l-~~~i~~ 1025 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAM-KERIPV 1025 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHH-HHhccc
Confidence 35699999999999999996 899999999999999999999999999998889999999997654 234455
Q ss_pred eEEEEeC
Q 001270 712 DLVLLAK 718 (1111)
Q Consensus 712 ~vilL~~ 718 (1111)
+|.|-..
T Consensus 1026 qi~V~k~ 1032 (1047)
T PRK10246 1026 QIKVKKI 1032 (1047)
T ss_pred eEEEEEC
Confidence 5555543
No 441
>PRK03918 chromosome segregation protein; Provisional
Probab=98.96 E-value=1.4e-09 Score=138.92 Aligned_cols=77 Identities=27% Similarity=0.336 Sum_probs=67.6
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeE
Q 001270 640 KRGISGGQRK------RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDL 713 (1111)
Q Consensus 640 ~rgLSGGQrQ------RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~v 713 (1111)
+..|||||+| |++||++++.+|+++||||||++||+..+..+.++|..++..+.+||+|||++. +...+|++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~~ 863 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADYV 863 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCeE
Confidence 3569999999 555666788999999999999999999999999999998777889999999975 45889999
Q ss_pred EEEeC
Q 001270 714 VLLAK 718 (1111)
Q Consensus 714 ilL~~ 718 (1111)
++|.+
T Consensus 864 ~~l~~ 868 (880)
T PRK03918 864 IRVSL 868 (880)
T ss_pred EEEEe
Confidence 99984
No 442
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.93 E-value=2.5e-09 Score=106.86 Aligned_cols=63 Identities=22% Similarity=0.217 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHH
Q 001270 643 ISGGQRKRVHVGLEMVMEPSLLLLDEPTS----------GLDSASSQLLLRALRREALEGVNICLVVHQPSYA 705 (1111)
Q Consensus 643 LSGGQrQRVaIArALl~~P~lLLLDEPTS----------GLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~ 705 (1111)
.+.++.+++..+++...+|+++++||+++ ++|......+.+++....+.+.|+|+++|.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45667778889999999999999999994 4555556666666655555699999999987643
No 443
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.89 E-value=3e-09 Score=141.15 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=60.3
Q ss_pred CCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCccHHHHHh
Q 001270 641 RGISGGQRK------RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-----EGVNICLVVHQPSYALFRM 709 (1111)
Q Consensus 641 rgLSGGQrQ------RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-----~G~TVIivtHq~~~~i~~~ 709 (1111)
..||||||| |++||++|+.+|++|+|||||+|||+.+...+.+.|.++.. .|.+||+|||++.. +..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~-~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF-VELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHH-HHHH
Confidence 359999999 99999999999999999999999999999999999988742 37899999999875 3344
Q ss_pred c
Q 001270 710 F 710 (1111)
Q Consensus 710 ~ 710 (1111)
+
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 3
No 444
>PRK13695 putative NTPase; Provisional
Probab=98.88 E-value=9.9e-10 Score=114.00 Aligned_cols=77 Identities=10% Similarity=0.107 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 642 GISGGQRKRVHVGLEMVMEPSLLLLDEP--TSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 642 gLSGGQrQRVaIArALl~~P~lLLLDEP--TSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
.+||+++-++.+++..+.+|++|++||| +.++|.. +++.|.++.+.|.++|+++|+.. +....|++..+.+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~~~~i~v~h~~~--~~~~~~~i~~~~~- 150 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVLDSEKPVIATLHRRS--VHPFVQEIKSRPG- 150 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHHhCCCeEEEEECchh--hHHHHHHHhccCC-
Confidence 3899999999999999999999999995 4445433 56666666667899999999843 3467899888876
Q ss_pred cEEEEe
Q 001270 720 GLTVYH 725 (1111)
Q Consensus 720 G~iv~~ 725 (1111)
|++++.
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 565443
No 445
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.87 E-value=4e-08 Score=102.64 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCc
Q 001270 643 ISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGG 720 (1111)
Q Consensus 643 LSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG 720 (1111)
.|-||-=---+.+.+ ++--|.|||||-++|.+.-+.+++..|+++++.|.-+||+||.|-.. .---..|+-++.+|
T Consensus 130 ~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLl-AiP~A~I~~~~~~g 205 (233)
T COG3910 130 MSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILL-AIPGAEIYEISESG 205 (233)
T ss_pred hccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhe-eCCCcEEEEEecCC
Confidence 688887555555544 57789999999999999999999999999999999999999998532 12235677777766
No 446
>PRK01156 chromosome segregation protein; Provisional
Probab=98.86 E-value=6.4e-09 Score=133.42 Aligned_cols=80 Identities=23% Similarity=0.296 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-CEEEEEecCccHHHHHhc
Q 001270 640 KRGISGGQRKRVHV------GLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREA-LE-G-VNICLVVHQPSYALFRMF 710 (1111)
Q Consensus 640 ~rgLSGGQrQRVaI------ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la-~~-G-~TVIivtHq~~~~i~~~~ 710 (1111)
+..|||||++|++| |++|+.+|++++|||||++||+.....+.++|+... .. | .+||++||++.. ...+
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~--~~~~ 876 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHREL--LSVA 876 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHH--HHhc
Confidence 55799999999975 589999999999999999999999999999998644 33 3 489999999864 4789
Q ss_pred CeEEEEeC-CcE
Q 001270 711 DDLVLLAK-GGL 721 (1111)
Q Consensus 711 D~vilL~~-GG~ 721 (1111)
|+++.+.. ||.
T Consensus 877 d~ii~~~~~~~~ 888 (895)
T PRK01156 877 DVAYEVKKSSGS 888 (895)
T ss_pred CeEEEEEecCCe
Confidence 99999983 553
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.82 E-value=1.1e-08 Score=116.24 Aligned_cols=143 Identities=18% Similarity=0.170 Sum_probs=91.5
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC-CcccccccEEEEccCCCC-CCCCCHHHHHH
Q 001270 521 CVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE-PIHSYKKIIGFVPQDDIV-HGNLTVEENLW 598 (1111)
Q Consensus 521 ~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~-~~~~~r~~IgyV~Qd~~l-~~~LTV~EnL~ 598 (1111)
=+++.++.|+.++|.||+|||||||+++|++..+ +..|.|.+..... ... .+..+.++.+...- ...
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~--~~~~iv~ied~~El~~~-~~~~~~l~~~~~~~~~~~-------- 204 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP--KDERIITIEDTREIFLP-HPNYVHLFYSKGGQGLAK-------- 204 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC--ccccEEEEcCccccCCC-CCCEEEEEecCCCCCcCc--------
Confidence 3567789999999999999999999999999764 4567777753211 111 11222222221000 000
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 001270 599 FHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASS 678 (1111)
Q Consensus 599 f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~ 678 (1111)
++- .-.+..+|-.+|++|++|||.+
T Consensus 205 --------------------------------------------~~~----~~~l~~~Lr~~pd~ii~gE~r~------- 229 (308)
T TIGR02788 205 --------------------------------------------VTP----KDLLQSCLRMRPDRIILGELRG------- 229 (308)
T ss_pred --------------------------------------------cCH----HHHHHHHhcCCCCeEEEeccCC-------
Confidence 111 1134556778999999999996
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 679 QLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 679 ~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
.++.+.++.+...+.+++.++|..+. ....+|++.|..| .+...|.+.++.
T Consensus 230 ~e~~~~l~a~~~g~~~~i~T~Ha~~~--~~~~~Rl~~l~~~-~~~~~g~~~~~~ 280 (308)
T TIGR02788 230 DEAFDFIRAVNTGHPGSITTLHAGSP--EEAFEQLALMVKS-SQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCH--HHHHHHHHHHhhc-cccccCCCHHHH
Confidence 34566666655333467999999884 3668999888764 556666666543
No 448
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.82 E-value=3.3e-08 Score=125.49 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=58.2
Q ss_pred HhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHH--------HHhcCeEEEEeCCcEEEEecC
Q 001270 657 MVMEPSLLLLDEPTSGL-DSASSQLLLRALRREALEGVNICLVVHQPSYAL--------FRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGL-D~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i--------~~~~D~vilL~~GG~iv~~G~ 727 (1111)
+..+|.++++|||+.+| |+..+..+.+.++++++.|.++|++||+++... .+.++.+++|.++ .+...|.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~-~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNG-AAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCc-cccccch
Confidence 35799999999999999 799999999999999888999999999997532 3578989988764 5544453
No 449
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.78 E-value=2.6e-08 Score=117.19 Aligned_cols=168 Identities=17% Similarity=0.138 Sum_probs=111.7
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 581 (1111)
++-+.++..+.. ...+++++ +.+.+|+.++|+|+||+|||||+++|+|... ++.|.|.+.|+.
T Consensus 131 ~~r~~i~~~l~T-GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~~~gvI~~iGer------------- 193 (432)
T PRK06793 131 FEREEITDVFET-GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK--ADINVISLVGER------------- 193 (432)
T ss_pred hheechhhccCC-CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC--CCeEEEEeCCCC-------------
Confidence 344556665643 34688885 9999999999999999999999999999654 466766665532
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh---
Q 001270 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV--- 658 (1111)
Q Consensus 582 ~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl--- 658 (1111)
..+|.|.+..... .-|+... ..+ .....-|.|+|+|++.+.+.+
T Consensus 194 --------g~ev~e~~~~~l~---------------------~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 194 --------GREVKDFIRKELG---------------------EEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred --------cccHHHHHHHHhh---------------------hccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHH
Confidence 1356665542111 1111110 011 112347999999999999888
Q ss_pred ----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 659 ----MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 659 ----~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
.++-+|++|+||...|+. .+|-..+.+.-..|.+..+.+|.+. +.+ |.-... +|.+...+.
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~--L~E---Rag~~~-~GSiT~~~t 305 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKK--LLE---RSGKTQ-KGSITGIYT 305 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchh--HHH---HhccCC-CcceEEEEE
Confidence 789999999999999996 4554455555445888888888432 333 333343 566655444
No 450
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.72 E-value=1.5e-08 Score=132.38 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEE
Q 001270 640 KRGISGGQRKRVHVGLEMV----MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVL 715 (1111)
Q Consensus 640 ~rgLSGGQrQRVaIArALl----~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vil 715 (1111)
+..||||||||++||++++ ..|+++||||||++||+.+...+.++|+.+++ +.+||+|||++.. ...+|+++.
T Consensus 1087 ~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~~ 1163 (1179)
T TIGR02168 1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLYG 1163 (1179)
T ss_pred ccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHee
Confidence 4569999999999999985 67799999999999999999999999999864 5789999999874 478999876
Q ss_pred Ee
Q 001270 716 LA 717 (1111)
Q Consensus 716 L~ 717 (1111)
+.
T Consensus 1164 ~~ 1165 (1179)
T TIGR02168 1164 VT 1165 (1179)
T ss_pred ee
Confidence 64
No 451
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=98.66 E-value=6.7e-07 Score=95.15 Aligned_cols=148 Identities=10% Similarity=0.048 Sum_probs=98.5
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH-
Q 001270 940 RASGMSSLAYFLAKDTIDHFNTVIKPVVYLSMFYFFTNPRSS-FADNYAVLLCLVYCVTGIAYALAIFFEPGSAQLWSV- 1017 (1111)
Q Consensus 940 r~sG~y~~aYflAk~l~dlp~~ii~piif~si~Yfm~glr~~-~~~~f~~~lll~~~~~~l~~~l~i~~~~~~a~l~~~- 1017 (1111)
+.+......++++|.+...+..++..+++..+.|++.|.+.. +...+.+.++..++..+++..++..+.. .++..+.
T Consensus 53 ~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~l~~~~~~~lg~~l~~~~~~-~~~~~~~~ 131 (208)
T TIGR03062 53 LPKSARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGN-VGRFLALV 131 (208)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chHHHHHH
Confidence 344455668899999999999999998888889998887643 3323333334444555666666665542 2222222
Q ss_pred -HHHHH--hhhhccCCcccchhhccccccHHHHHHHHHHHhccccccCcccccccchhhhcccccCchhHHHHHHHHHHH
Q 001270 1018 -LLPVV--LTLIATRKTDSEFMKNIANLCYPKWALQAFVVANAERYYGVWLITRCGLLMKSGYDLQEWGLCIGILIVYGV 1094 (1111)
Q Consensus 1018 -l~p~~--~~l~~~~~~iP~~l~Wl~yiS~~rYa~eal~ine~~~y~g~~~~~~c~~L~~~G~d~~~~~~~i~iLi~~~v 1094 (1111)
+.+.+ .+.+.+.+.+|+|++|+.+++|.+|+++++-... +.|. ....+.++++|+++++
T Consensus 132 ~~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~---~~~~---------------~~~~~~~~~~L~~~~~ 193 (208)
T TIGR03062 132 LLVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLI---SGGN---------------DGTLWQAVAVLLLILV 193 (208)
T ss_pred HHHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHH---hCCc---------------HHHHHHHHHHHHHHHH
Confidence 11111 1124567889999999999999999999986442 1221 1245568889999999
Q ss_pred HHHHHHHHHHHh
Q 001270 1095 VSRIIAFFGMLI 1106 (1111)
Q Consensus 1095 ~frvlayl~L~~ 1106 (1111)
++.++++...+.
T Consensus 194 v~~~la~~~~~~ 205 (208)
T TIGR03062 194 VFLALSLLSARR 205 (208)
T ss_pred HHHHHHHHHHhh
Confidence 898888876654
No 452
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.64 E-value=1.2e-07 Score=101.06 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=43.2
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~ 717 (1111)
+|+++|..+|+++++|||. |......+ .+.+..|..|+.++|..+. ....+|++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4788899999999999996 65543333 2345679999999999874 36788887764
No 453
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.64 E-value=2e-07 Score=101.39 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHH------HHHhcC
Q 001270 643 ISGGQRKRVHVGLEMVM--EPSLLLLDEPTSG---LDSASSQLLLRALRREALEGVNICLVVHQPSYA------LFRMFD 711 (1111)
Q Consensus 643 LSGGQrQRVaIArALl~--~P~lLLLDEPTSG---LD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~------i~~~~D 711 (1111)
.|.++++.+.+...++. +|+++++||||+. +|......+++.++.++++|.|+++++|+.... +..++|
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~D 180 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICD 180 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheE
Confidence 57789999999999997 9999999999965 445555566666776677799999999986531 234455
Q ss_pred eEEEEe
Q 001270 712 DLVLLA 717 (1111)
Q Consensus 712 ~vilL~ 717 (1111)
-++.|.
T Consensus 181 gvI~L~ 186 (234)
T PRK06067 181 VYLKLR 186 (234)
T ss_pred EEEEEE
Confidence 555554
No 454
>PRK02224 chromosome segregation protein; Provisional
Probab=98.63 E-value=6.4e-08 Score=124.06 Aligned_cols=78 Identities=33% Similarity=0.422 Sum_probs=67.2
Q ss_pred CCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCccHHH
Q 001270 640 KRGISGGQRK------RVHVGLEMVME-----P-SLLLLDEPTSGLDSASSQLLLRALRREALEGV-NICLVVHQPSYAL 706 (1111)
Q Consensus 640 ~rgLSGGQrQ------RVaIArALl~~-----P-~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~-TVIivtHq~~~~i 706 (1111)
+..||||||+ |++||++++.+ | +++||||||++||+.....+.+.|+.+...|. +||++||++..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~-- 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL-- 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH--
Confidence 4579999999 89999998864 3 67999999999999999999999999876664 89999999864
Q ss_pred HHhcCeEEEEeCC
Q 001270 707 FRMFDDLVLLAKG 719 (1111)
Q Consensus 707 ~~~~D~vilL~~G 719 (1111)
...+|+++.|.++
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 3679999999754
No 455
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.63 E-value=9.1e-08 Score=114.12 Aligned_cols=151 Identities=21% Similarity=0.287 Sum_probs=94.1
Q ss_pred eEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHH
Q 001270 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENL 597 (1111)
Q Consensus 518 IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL 597 (1111)
++++.+..+..|++++++||||+||||++..|++.+. ...|. ++|++|.+|. ...++.|+|
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~--~~~G~--------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV--MRHGA--------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH--HhcCC--------------CeEEEEeCCc---cchhHHHHH
Confidence 4566777788899999999999999999999998542 11221 3588999886 357899999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC-----CEEEEeCCCCC
Q 001270 598 WFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEP-----SLLLLDEPTSG 672 (1111)
Q Consensus 598 ~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P-----~lLLLDEPTSG 672 (1111)
.+.+..... +........+..+...+|.+....++.+ .|.|-.. ..+.-..+++.++ .+|+||.++.+
T Consensus 306 r~~AeilGV---pv~~~~~~~Dl~~aL~~L~d~d~VLIDT---aGr~~~d-~~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 306 RIYGKILGV---PVHAVKDAADLRLALSELRNKHIVLIDT---IGMSQRD-RMVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred HHHHHHhCC---CeeccCCchhHHHHHHhccCCCeEEeCC---CCcChhh-HHHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 987765421 1111111223344556776665555544 1222211 1234445555555 68999999887
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 001270 673 LDSASSQLLLRALRREALEGVNICLVVH 700 (1111)
Q Consensus 673 LD~~s~~~Il~~L~~la~~G~TVIivtH 700 (1111)
..+.+.++.....+.+-+|.|+
T Consensus 379 ------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 379 ------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred ------HHHHHHHHHhccCCCCEEEEeC
Confidence 3345555555545666566665
No 456
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.61 E-value=1.2e-06 Score=83.74 Aligned_cols=58 Identities=33% Similarity=0.418 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCCEEEEEec
Q 001270 643 ISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLR------ALRREALEGVNICLVVH 700 (1111)
Q Consensus 643 LSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~------~L~~la~~G~TVIivtH 700 (1111)
..+++..+..++++--.+|.+|++||+..-.+......... ........+..+|+++|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 67888888888888888899999999999999998887764 22223345778888888
No 457
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.58 E-value=7.2e-08 Score=126.28 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEE
Q 001270 640 KRGISGGQRKRVHVGLEMVM----EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVL 715 (1111)
Q Consensus 640 ~rgLSGGQrQRVaIArALl~----~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vil 715 (1111)
+..||||||++++||++|+. .|+++|||||+++||+.....+.++|+++.. +..+|++||++. ++..+|+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEe
Confidence 35799999999999999985 7899999999999999999999999998754 578999999975 4589999987
Q ss_pred EeC
Q 001270 716 LAK 718 (1111)
Q Consensus 716 L~~ 718 (1111)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 754
No 458
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.57 E-value=7.1e-06 Score=89.03 Aligned_cols=152 Identities=12% Similarity=0.061 Sum_probs=94.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHhcCc-hh
Q 001270 934 LQYWRERASGMSSLAYFLAKDTIDHFNTVIKPVVYLSMFYFFTNPRSS-FADNYAVLLCLVYCVTGIAYALAIFFEP-GS 1011 (1111)
Q Consensus 934 ~vf~REr~sG~y~~aYflAk~l~dlp~~ii~piif~si~Yfm~glr~~-~~~~f~~~lll~~~~~~l~~~l~i~~~~-~~ 1011 (1111)
.++.|=..+...+..|+++|.+...+..++..+++..+.|++.+.... +...++..+++.++..+++..++..... ..
T Consensus 77 g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~ 156 (236)
T TIGR01247 77 GFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPSGVIPTLVLAFIVGVALSGLGVAIAARMDSMEG 156 (236)
T ss_pred CHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 444454455667789999999999998888888888888877654432 1112222222233345666666655432 22
Q ss_pred HHHHH-H-HHHH--HhhhhccCCcccchhhccccccHHHHHHHHHHHhccccccCcccccccchhhhcccccCchhHHHH
Q 001270 1012 AQLWS-V-LLPV--VLTLIATRKTDSEFMKNIANLCYPKWALQAFVVANAERYYGVWLITRCGLLMKSGYDLQEWGLCIG 1087 (1111)
Q Consensus 1012 a~l~~-~-l~p~--~~~l~~~~~~iP~~l~Wl~yiS~~rYa~eal~ine~~~y~g~~~~~~c~~L~~~G~d~~~~~~~i~ 1087 (1111)
++... . ..|+ +.+.+.+.+.+|+|++|+.+++|.+|+.|++-..- .++ -...+++.+++
T Consensus 157 ~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~---~~~--------------~~~~~~~~~~~ 219 (236)
T TIGR01247 157 FQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYL---AGV--------------SPTFPLEQDLL 219 (236)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHH---hCC--------------CcccchHHHHH
Confidence 22222 1 2222 22245677889999999999999999999855321 111 11234556788
Q ss_pred HHHHHHHHHHHHHHH
Q 001270 1088 ILIVYGVVSRIIAFF 1102 (1111)
Q Consensus 1088 iLi~~~v~frvlayl 1102 (1111)
+|+++++++-+++-.
T Consensus 220 ~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 220 VLTLLAVIFVGIAAV 234 (236)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888777643
No 459
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.53 E-value=2.7e-07 Score=100.85 Aligned_cols=136 Identities=25% Similarity=0.410 Sum_probs=81.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECC-eeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccc
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGKAIACKATGLILING-KNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSA 607 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG-~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~ 607 (1111)
|.+..|+||+|+|||||+--++=-. ..|.=.+.+ ... .-...+-|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v----a~G~~~~g~~~~~---~~~~~Vlyi~~Ed---------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM----ALGKNLFGGGLKV---TEPGRVVYLSAED---------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH----hcCccccCCcccc---CCCceEEEEECCC----------------------
Confidence 7789999999999999998776311 112111110 100 0122344443221
Q ss_pred cchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC
Q 001270 608 HLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL----------------EMVMEPSLLLLDEPTS 671 (1111)
Q Consensus 608 ~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr----------------ALl~~P~lLLLDEPTS 671 (1111)
+..+...++..+...+++.+..++.+ +.+|+.|++.+++ ....+|+++|+| |++
T Consensus 52 --~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~ 121 (239)
T cd01125 52 --PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLV 121 (239)
T ss_pred --CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChH
Confidence 11112233445555555544433332 2245555554443 335799999999 775
Q ss_pred ------CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCcc
Q 001270 672 ------GLDSASSQLLLRALRREALE-GVNICLVVHQPS 703 (1111)
Q Consensus 672 ------GLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~ 703 (1111)
.+|+.....+++.|++++++ |.+||+++|...
T Consensus 122 ~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 122 SFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999998765 899999999854
No 460
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.52 E-value=5.6e-08 Score=114.54 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=44.0
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCcee-EEEECCeeCC
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG-LILINGKNEP 570 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG-~I~inG~~~~ 570 (1111)
+.+|++||+++++||+++|+|||||||||||+ +|+.. +.+| +|.++|+++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~--~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK--FSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC--CCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 56544 4555 8999998753
No 461
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=98.49 E-value=2.5e-05 Score=84.85 Aligned_cols=213 Identities=10% Similarity=0.000 Sum_probs=113.0
Q ss_pred hcchhhHHHHHHHHHHHHHHHhhcccCCccccchhhHHH-HHH--HHHHHHhhhhHHHHHHHHH--HHHHHhcCCCChHH
Q 001270 874 LREAKPQAVDFLILLLAGACLGSLSKVGDENFGAAGYSH-TII--AVSLLCKIAALRTFSLEKL--QYWRERASGMSSLA 948 (1111)
Q Consensus 874 ~Rd~~~~~~~~~~~ll~Gl~lG~l~~~~~~~~g~~g~~f-~vi--a~~ll~~i~al~~F~~ER~--vf~REr~sG~y~~a 948 (1111)
+|||...+.-+.+-+++=+.++.++....+ .+...+.. ..+ .....+.+..-..+..||. .+.|=+.+.+.+..
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~~~~~ 80 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSVT-HNRGATFIPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPLPRLG 80 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccC-CcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCCcHHH
Confidence 578877766666555554445554432110 11111110 011 1112222223344555554 66677777778889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCcch--HHHHHHHHHHHHHHHHHHHHHHHHhcC----chhHHHHHH--HHH
Q 001270 949 YFLAKDTIDHFNTVIKPVVYLSMFYFFTNPRSS--FADNYAVLLCLVYCVTGIAYALAIFFE----PGSAQLWSV--LLP 1020 (1111)
Q Consensus 949 YflAk~l~dlp~~ii~piif~si~Yfm~glr~~--~~~~f~~~lll~~~~~~l~~~l~i~~~----~~~a~l~~~--l~p 1020 (1111)
|+++|.+...+..++..+++ .+++++.|.+.. ....+...++......+++..++.+.. +..+..... .+|
T Consensus 81 ~l~g~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~p 159 (232)
T TIGR00025 81 ILAGRSLAVVARVFLQTLIL-LVIGFVLGFRFAGGALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANLVWFI 159 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 99999887777766554444 455666676542 211122222222233344444443321 111121111 222
Q ss_pred HH--hhhhccCCcccchhhccccccHHHHHHHHHHHhccccccCcccccccchhhhcccccCchhHHHHHHHHHHHHHHH
Q 001270 1021 VV--LTLIATRKTDSEFMKNIANLCYPKWALQAFVVANAERYYGVWLITRCGLLMKSGYDLQEWGLCIGILIVYGVVSRI 1098 (1111)
Q Consensus 1021 ~~--~~l~~~~~~iP~~l~Wl~yiS~~rYa~eal~ine~~~y~g~~~~~~c~~L~~~G~d~~~~~~~i~iLi~~~v~frv 1098 (1111)
.. .+.+.+.+.+|.|++|+.+++|.+|+.+++--.. .| |-+....+.++++++++.+++..
T Consensus 160 ~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~----~~-------------~~~~~~~~~~~~~l~~~~~v~~~ 222 (232)
T TIGR00025 160 FALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAA----TV-------------SVDTFGAVRDLVVVLAFWVALAA 222 (232)
T ss_pred HHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHH----cC-------------CCChhhHHHHHHHHHHHHHHHHH
Confidence 22 1245678899999999999999999999865431 11 22223445677788888888777
Q ss_pred HHHHHHH
Q 001270 1099 IAFFGML 1105 (1111)
Q Consensus 1099 layl~L~ 1105 (1111)
++....+
T Consensus 223 la~~~~~ 229 (232)
T TIGR00025 223 LAAIRLR 229 (232)
T ss_pred HHHHHHh
Confidence 7765543
No 462
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=98.48 E-value=2.9e-05 Score=85.84 Aligned_cols=223 Identities=12% Similarity=0.063 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHhhcc-hhhHHHHHHHHH----HHHHHHhhcccCCccccchhhHHHHH---HHH--HHHHhhhhH-HHH
Q 001270 861 QYRFFLGRVAKQRLRE-AKPQAVDFLILL----LAGACLGSLSKVGDENFGAAGYSHTI---IAV--SLLCKIAAL-RTF 929 (1111)
Q Consensus 861 Q~~~Ll~R~~~q~~Rd-~~~~~~~~~~~l----l~Gl~lG~l~~~~~~~~g~~g~~f~v---ia~--~ll~~i~al-~~F 929 (1111)
+...+++|.+++.+|+ +......++.-+ ++|..+|..... ..|....-|.+ +++ ...+..... ..+
T Consensus 6 ~~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~---~~g~~y~~f~~pg~l~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR01291 6 NWAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGS---VDGVSYAAFLAAGMVATSAMTASTFETIYATF 82 (253)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556779999999999 666655554433 344444432111 11111111211 111 111111111 123
Q ss_pred HH--HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001270 930 SL--EKLQYWRERASGMSSLAYFLAKDTIDHFNTVIKPVVYLSMFYFFTN-PRSSFADNYAVLLCLVYCVTGIAYALAIF 1006 (1111)
Q Consensus 930 ~~--ER~vf~REr~sG~y~~aYflAk~l~dlp~~ii~piif~si~Yfm~g-lr~~~~~~f~~~lll~~~~~~l~~~l~i~ 1006 (1111)
.. |+..+.|-+.+-+.+..+.++|.+.+....++..++...+.+++.. +...+...+.++++..+...+++..++..
T Consensus 83 ~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~g~~~~~~~l~~~~~~ll~~l~~~~lg~~~a~~ 162 (253)
T TIGR01291 83 ARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATLGYIEWWSLIYILPVIALTGLAFASLSMLVAAL 162 (253)
T ss_pred HHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3335555555556677899999998876655555444444444322 11122111222233333445677777654
Q ss_pred cCc-hhHHHHH--HHHHHHhh--hhccCCcccchhhccccccHHHHHHHHHHHhccccccCcccccccchhhhcccccCc
Q 001270 1007 FEP-GSAQLWS--VLLPVVLT--LIATRKTDSEFMKNIANLCYPKWALQAFVVANAERYYGVWLITRCGLLMKSGYDLQE 1081 (1111)
Q Consensus 1007 ~~~-~~a~l~~--~l~p~~~~--l~~~~~~iP~~l~Wl~yiS~~rYa~eal~ine~~~y~g~~~~~~c~~L~~~G~d~~~ 1081 (1111)
... ..++... .+.|+++. .+.+.+.+|.|++++.+++|..|+.|++-..- . |-+..+
T Consensus 163 ~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~----~--------------g~~~~~ 224 (253)
T TIGR01291 163 APSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVM----L--------------GGPGTQ 224 (253)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHH----h--------------CCCcHH
Confidence 432 1222211 22333222 34577889999999999999999999844321 1 111123
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 001270 1082 WGLCIGILIVYGVVSRIIAFFGM 1104 (1111)
Q Consensus 1082 ~~~~i~iLi~~~v~frvlayl~L 1104 (1111)
++.++++++++++++-+++....
T Consensus 225 ~~~~~~~l~~~~vv~~~la~~~f 247 (253)
T TIGR01291 225 VGLHLGALCLYAVVPFFISAALL 247 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888777766665443
No 463
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.42 E-value=5.4e-07 Score=94.92 Aligned_cols=82 Identities=22% Similarity=0.223 Sum_probs=60.7
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCC--CCCCCCCHHHHHH
Q 001270 521 CVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDD--IVHGNLTVEENLW 598 (1111)
Q Consensus 521 ~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~--~l~~~LTV~EnL~ 598 (1111)
=+.+.+++|+.++|+||||||||||+++|+|+.+ +..|.|.+.+...-....+..++++.|.. ...+..|+.+.+.
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~--~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLLNALLAFIP--PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLR 94 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHH
Confidence 3445588999999999999999999999999765 57899999875422112345577776654 3456789999988
Q ss_pred HHHHhh
Q 001270 599 FHARCR 604 (1111)
Q Consensus 599 f~a~~~ 604 (1111)
...+..
T Consensus 95 ~~lR~~ 100 (186)
T cd01130 95 SALRMR 100 (186)
T ss_pred HHhccC
Confidence 776543
No 464
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.38 E-value=2.4e-06 Score=109.25 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=48.6
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCccHH
Q 001270 653 VGLEMVMEPSLLLLDEPTSGL-DSASSQLLLRALRREALEGVNICLVVHQPSYA 705 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGL-D~~s~~~Il~~L~~la~~G~TVIivtHq~~~~ 705 (1111)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~ 733 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDA 733 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 677888999999999999999 79999999999999988899999999998754
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.38 E-value=1.7e-08 Score=121.25 Aligned_cols=165 Identities=19% Similarity=0.218 Sum_probs=99.2
Q ss_pred Eeee-EEEEeCCeEEEEEcCCCCCHHHHHHHH--hcCCCCCCceeEEEECCeeCCcccc---cccEEEEccCCCCCCCCC
Q 001270 519 LRCV-TGKIRPGRITAVMGPSGAGKTTFLSAL--AGKAIACKATGLILINGKNEPIHSY---KKIIGFVPQDDIVHGNLT 592 (1111)
Q Consensus 519 L~~V-S~~I~~GeivaIiGpSGSGKSTLLkiL--aGl~~~~~~sG~I~inG~~~~~~~~---r~~IgyV~Qd~~l~~~LT 592 (1111)
|+.+ .+=+++|.++.|.|++|||||||..-+ .|... ..+.-+++.... +...+ .+.+||-.++..--..+.
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~eE-~~~~l~~~~~~~G~~~~~~~~~g~l~ 86 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH--FDEPGVFVTFEE-SPQDIIKNARSFGWDLQKLVDEGKLF 86 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEec-CHHHHHHHHHHcCCCHHHHhhcCceE
Confidence 4443 446899999999999999999999866 34322 123445554432 12222 233555444321000000
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCC
Q 001270 593 VEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVG--LEMVMEPSLLLLDEPT 670 (1111)
Q Consensus 593 V~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIA--rALl~~P~lLLLDEPT 670 (1111)
+.+ . .... ....+++.+++.+..++.... +|+|++|||.|+ .+|...|+.+
T Consensus 87 ~~~-----------~-~~~~----~~~~~~~~~~l~~~l~~i~~~-----ls~g~~qRVvIDSl~aL~~~~~~~------ 139 (484)
T TIGR02655 87 ILD-----------A-SPDP----EGQDVVGGFDLSALIERINYA-----IRKYKAKRVSIDSVTAVFQQYDAV------ 139 (484)
T ss_pred EEe-----------c-Cchh----ccccccccCCHHHHHHHHHHH-----HHHhCCcEEEEeehhHhhhhcCch------
Confidence 000 0 0000 011234455665555655544 899999999999 6666665544
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHH--------HHHhcCeEEEEe
Q 001270 671 SGLDSASSQLLLRALRREALEGVNICLVVHQPSYA--------LFRMFDDLVLLA 717 (1111)
Q Consensus 671 SGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~--------i~~~~D~vilL~ 717 (1111)
...+..+.++++.+++.|.|+|+++|+++.. ...++|.++.|.
T Consensus 140 ----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677888999998888899999999987531 134678888775
No 466
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.37 E-value=5e-07 Score=105.05 Aligned_cols=59 Identities=29% Similarity=0.376 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 001270 642 GISGGQRKRVHVGLEMVM---------EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPS 703 (1111)
Q Consensus 642 gLSGGQrQRVaIArALl~---------~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~ 703 (1111)
-+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|.+. |.+|++++|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 389999999999999999 99999999999999999999999999753 679999999875
No 467
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.34 E-value=1.2e-06 Score=112.87 Aligned_cols=80 Identities=28% Similarity=0.358 Sum_probs=69.4
Q ss_pred cCCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhc
Q 001270 639 EKRGISGGQRKRVHVGLEMV------ME--PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMF 710 (1111)
Q Consensus 639 ~~rgLSGGQrQRVaIArALl------~~--P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~ 710 (1111)
....|||||+=.++||.+|+ .+ -++|||||||..||+.+...++++|..+...+.+||||||+.+ +...+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~ee--l~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEE--LKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHH--HHHhC
Confidence 34569999999888877765 45 6999999999999999999999999999888999999999975 45789
Q ss_pred CeEEEEeCCc
Q 001270 711 DDLVLLAKGG 720 (1111)
Q Consensus 711 D~vilL~~GG 720 (1111)
|.++.+...+
T Consensus 890 ~~~i~V~k~~ 899 (908)
T COG0419 890 DVRIRVKKDG 899 (908)
T ss_pred CeEEEEEecC
Confidence 9999997644
No 468
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.29 E-value=5.5e-07 Score=95.27 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=64.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccch
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLA 610 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~ 610 (1111)
+++|.||||||||||.+.|.+++. .|. +.++++|+.. ..++..+......... ..+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~----------------~~v~~~D~~~-~~~~~~~~~~~~~~~~---~~~ 56 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPK----------------VVIISQDSYY-KDLSHEELEERKNNNY---DHP 56 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCC----------------eEEEEecccc-cccccccHHHhccCCC---CCC
Confidence 589999999999999999999651 122 2333333222 1222222221111000 000
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001270 611 KADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDS 675 (1111)
Q Consensus 611 ~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~ 675 (1111)
.........+.+..+...+..+.++.+ .|.|++++..+ .+.+++++|+|+|+.+.++
T Consensus 57 ~~~~~~~~~~~l~~l~~~~~~~~p~~d-----~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 57 DAFDFDLLISHLQDLKNGKSVEIPVYD-----FKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred CcccHHHHHHHHHHHHCCCCEeccccc-----cccCcccCCce---ecCCCCEEEEechhhccch
Confidence 001111234455656554444444433 78888776555 5788999999999999986
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.29 E-value=2.6e-06 Score=98.33 Aligned_cols=57 Identities=18% Similarity=0.245 Sum_probs=43.4
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~ 717 (1111)
+|+++|-.+|++|++||+. |+.+....++ .+..|.+|+.++|-.+. ....+|++-|.
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~~ 243 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSA--AQTIERIIDVF 243 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCH--HHHHHHHHHhc
Confidence 4667888999999999997 8887765444 35579999999998764 36677776553
No 470
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.27 E-value=2.6e-07 Score=99.85 Aligned_cols=42 Identities=33% Similarity=0.496 Sum_probs=30.9
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHh--cCCCCCCceeEEEECCe
Q 001270 523 TGKIRPGRITAVMGPSGAGKTTFLSALA--GKAIACKATGLILINGK 567 (1111)
Q Consensus 523 S~~I~~GeivaIiGpSGSGKSTLLkiLa--Gl~~~~~~sG~I~inG~ 567 (1111)
.+-+++|++++|.|++|+|||||...++ +.. ...+.+++...
T Consensus 14 ~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~---~g~~~~~is~e 57 (229)
T TIGR03881 14 EGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR---DGDPVIYVTTE 57 (229)
T ss_pred cCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEEcc
Confidence 3458999999999999999999988655 322 23345666653
No 471
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.24 E-value=1.7e-06 Score=102.11 Aligned_cols=88 Identities=20% Similarity=0.190 Sum_probs=67.2
Q ss_pred cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC-ceeEEEECCeeCCc---------ccccccEEEEccC
Q 001270 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACK-ATGLILINGKNEPI---------HSYKKIIGFVPQD 584 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~-~sG~I~inG~~~~~---------~~~r~~IgyV~Qd 584 (1111)
...+|+++ +.+.+|++++|+|+||+|||||+++|+|...+.. .-|.|-.+|.+... ...+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 35699999 9999999999999999999999999999764321 12444444433210 1234579999999
Q ss_pred CCCCCCCCHHHHHHHHHHh
Q 001270 585 DIVHGNLTVEENLWFHARC 603 (1111)
Q Consensus 585 ~~l~~~LTV~EnL~f~a~~ 603 (1111)
...+..+++.+++.+.+..
T Consensus 221 ~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 221 ESPLMRIKATELCHAIATY 239 (434)
T ss_pred CChhhhHHHHHHHHHHHHH
Confidence 9999999999999877654
No 472
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.17 E-value=4e-06 Score=99.22 Aligned_cols=82 Identities=22% Similarity=0.296 Sum_probs=64.8
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECC---eeCC---c---
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILING---KNEP---I--- 571 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG---~~~~---~--- 571 (1111)
.++.++++..|..+ ..+++.++ .|.+||.++|+|+||+||||||++|+++.. ++.|.|.+.| +++. .
T Consensus 139 ~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~--pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 139 AMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA--FDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCeeeeeecccCCccHHHHhHHHH
Confidence 46788999988643 57899996 999999999999999999999999999764 5779998865 3321 0
Q ss_pred -ccccccEEEEccCCC
Q 001270 572 -HSYKKIIGFVPQDDI 586 (1111)
Q Consensus 572 -~~~r~~IgyV~Qd~~ 586 (1111)
...++.|+||+|.+.
T Consensus 215 ~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 215 ADNLKKAVAVVATSDE 230 (450)
T ss_pred HHhhCCeEEEEEcCCC
Confidence 113467999999864
No 473
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.15 E-value=4.3e-06 Score=106.87 Aligned_cols=137 Identities=23% Similarity=0.287 Sum_probs=82.3
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHH
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEEN 596 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~En 596 (1111)
.|-+|+++. ..+.++.|.|||++||||+||.++-...- ..-| .|||=+.. .+.+.+.
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~il-Aq~G------------------~~VPa~~a---~i~~~d~ 652 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLL-AQIG------------------SFVPAESA---RIGIVDR 652 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHH-HhcC------------------Cceeccce---EecccCe
Confidence 456677777 67789999999999999999998753210 0111 12222111 0111111
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCC---CC
Q 001270 597 LWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM--EPSLLLLDEP---TS 671 (1111)
Q Consensus 597 L~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~--~P~lLLLDEP---TS 671 (1111)
| +.++|-. |.. ..|+|-=+.....++..|-. +++++||||| |+
T Consensus 653 I------------------------~triga~---d~i-----~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 653 I------------------------FTRIGAS---DDL-----ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred e------------------------eeccCcc---ccc-----ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 1 1111211 111 12466666666666666554 9999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCe
Q 001270 672 GLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDD 712 (1111)
Q Consensus 672 GLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~ 712 (1111)
.+|..+ ....+++.+.+. |.++|++||..+ +.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~e--l~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYHE--LTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechHH--HHHHhhh
Confidence 999444 345566666655 589999999954 4456654
No 474
>PRK15066 inner membrane transport permease; Provisional
Probab=98.14 E-value=0.0005 Score=76.04 Aligned_cols=232 Identities=14% Similarity=0.086 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHH-HHHHHHHHHHHhhcccCC-ccccchhhHHHHH---HHHHHH--HhhhhHHHHHH
Q 001270 859 FQQYRFFLGRVAKQRLREAKPQAVD-FLILLLAGACLGSLSKVG-DENFGAAGYSHTI---IAVSLL--CKIAALRTFSL 931 (1111)
Q Consensus 859 ~~Q~~~Ll~R~~~q~~Rd~~~~~~~-~~~~ll~Gl~lG~l~~~~-~~~~g~~g~~f~v---ia~~ll--~~i~al~~F~~ 931 (1111)
++-++.+.+|..+...|++...... +++.++..+++|.+.+.. .+.-+.....|.+ +.+..+ +...+...+.+
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~~~~~i~~ 86 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSNVASSFFS 86 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999988553333 334445556666543321 0000111111111 111111 11222233444
Q ss_pred HHH--HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcchHHHHHH-HHHHHHHHHHHHHHHHHHhcC
Q 001270 932 EKL--QYWRERASGMSSLAYFLAKDTIDHFNTVIKPVVYLSMFYFFTNPRSSFADNYA-VLLCLVYCVTGIAYALAIFFE 1008 (1111)
Q Consensus 932 ER~--vf~REr~sG~y~~aYflAk~l~dlp~~ii~piif~si~Yfm~glr~~~~~~f~-~~lll~~~~~~l~~~l~i~~~ 1008 (1111)
+|. ...|=..+-+.+..+.+++.+......++..++...+.+.+.+........++ .+++..+.....+..++....
T Consensus 87 ~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~~~~~l~~~ll~~~~f~~~gl~~a~~~~ 166 (257)
T PRK15066 87 AKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHHWGIVLLTVLLTAILFSLGGLINAVFAK 166 (257)
T ss_pred HHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 441 22232344556677888898877655444444443333333344432111111 111112222222444443221
Q ss_pred -chh-HHHHH-HHHHHHhh--hhccCCcccchhhccccccHHHHHHHHHHHhccccccCcccccccchhhhcccccCchh
Q 001270 1009 -PGS-AQLWS-VLLPVVLT--LIATRKTDSEFMKNIANLCYPKWALQAFVVANAERYYGVWLITRCGLLMKSGYDLQEWG 1083 (1111)
Q Consensus 1009 -~~~-a~l~~-~l~p~~~~--l~~~~~~iP~~l~Wl~yiS~~rYa~eal~ine~~~y~g~~~~~~c~~L~~~G~d~~~~~ 1083 (1111)
... .++.. .+.|+++. .+.+.+++|.+++|+.+++|..|..|++=-.- - |.+....+
T Consensus 167 ~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~----~--------------g~~~~~~~ 228 (257)
T PRK15066 167 SFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGF----L--------------GISDVPLW 228 (257)
T ss_pred cHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHH----c--------------CCCCccHH
Confidence 122 22222 22222221 34566789999999999999999999853220 1 11112345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 001270 1084 LCIGILIVYGVVSRIIAFFGMLIFQ 1108 (1111)
Q Consensus 1084 ~~i~iLi~~~v~frvlayl~L~~~~ 1108 (1111)
.++++++++++++-+++....+...
T Consensus 229 ~~l~~l~~~~~v~~~la~~~~~r~~ 253 (257)
T PRK15066 229 LAFAVLLVFIVVLYLLAWYLLERGR 253 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6788888888888777776665443
No 475
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.13 E-value=5.9e-06 Score=109.15 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=36.2
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECC
Q 001270 522 VTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILING 566 (1111)
Q Consensus 522 VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG 566 (1111)
+++..+.+++++|+|++|+|||||++.+.+.... ...|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeec
Confidence 4566778999999999999999999999875432 4578898875
No 476
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.13 E-value=1.2e-05 Score=95.50 Aligned_cols=173 Identities=20% Similarity=0.218 Sum_probs=104.9
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC-----------cccccccEEEEccC
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP-----------IHSYKKIIGFVPQD 584 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~-----------~~~~r~~IgyV~Qd 584 (1111)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|... +..|.+...|..-. ...+++-+-++.+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~--~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~ 227 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE--ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATS 227 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECC
Confidence 5689999 9999999999999999999999999999754 46677766664311 11133444454443
Q ss_pred CCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc--cccccccCccCCCCCHHHHHHHHHHHHHhhCCC
Q 001270 585 DIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT--VRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPS 662 (1111)
Q Consensus 585 ~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~--~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~ 662 (1111)
+. ++.+-..- +.. ....++.+.+ .|.+- ..|..- ---|-+| ++.
T Consensus 228 d~-----~p~~r~~~-~~~----------a~t~AE~frd-~G~~Vll~~DslT--------r~A~A~R-----Eis---- 273 (440)
T TIGR01026 228 DQ-----SPLLRLKG-AYV----------ATAIAEYFRD-QGKDVLLLMDSVT--------RFAMAQR-----EIG---- 273 (440)
T ss_pred CC-----CHHHHHHH-HHH----------HHHHHHHHHH-CCCCEEEEEeChH--------HHHHHHH-----HHH----
Confidence 32 12111110 000 0011222222 24321 112111 0112222 111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 663 LLLLDEP--TSGLDSASSQLLLRALRREALEGV-------NICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 663 lLLLDEP--TSGLD~~s~~~Il~~L~~la~~G~-------TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
+.+.|| +.|+|+.....+.+++.+....+. ||++.+||+.. ..+|++..+.+ |+++.+....+
T Consensus 274 -l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~d-G~ivLsr~la~ 345 (440)
T TIGR01026 274 -LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILD-GHIVLSRALAQ 345 (440)
T ss_pred -HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccc-eEEEEecchhh
Confidence 234575 559999999999999998776667 88888999753 46888888876 58888777644
No 477
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.11 E-value=4.6e-05 Score=97.24 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=44.6
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCccHH
Q 001270 656 EMVMEPSLLLLDEPTSGLD-SASSQLLLRALRREALEGVNICLVVHQPSYA 705 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD-~~s~~~Il~~L~~la~~G~TVIivtHq~~~~ 705 (1111)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||+++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4557899999999999999 8889999999999988899999999998653
No 478
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.10 E-value=4.1e-06 Score=111.68 Aligned_cols=59 Identities=25% Similarity=0.393 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Q 001270 641 RGISGGQRKRVH----VGLE--------MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQP 702 (1111)
Q Consensus 641 rgLSGGQrQRVa----IArA--------Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~ 702 (1111)
.+||||||||++ +|++ +..+|++|||||||+|||+.+...++++|.++ |.++||+||.+
T Consensus 1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 579999999996 5655 55899999999999999999999999999887 78899999874
No 479
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=98.08 E-value=0.00058 Score=75.19 Aligned_cols=194 Identities=9% Similarity=0.087 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhcc----cCCc-cccc-hhhH-HHHHHHH---HH-HHhhhhHH
Q 001270 859 FQQYRFFLGRVAKQRLREAKPQAVDFLILLLAGACLGSLS----KVGD-ENFG-AAGY-SHTIIAV---SL-LCKIAALR 927 (1111)
Q Consensus 859 ~~Q~~~Ll~R~~~q~~Rd~~~~~~~~~~~ll~Gl~lG~l~----~~~~-~~~g-~~g~-~f~via~---~l-l~~i~al~ 927 (1111)
+++++.+++|.++...||+.....-++.-++.-+++|..+ +... ...+ ..+| .|.+..+ .. ...+..-.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~ 80 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSL 80 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4688999999999999998887766665555555554433 2110 0011 1112 1211111 11 11111111
Q ss_pred HHHHHH--HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcch---HHHHHHHHHHHHHHHHHHHHH
Q 001270 928 TFSLEK--LQYWRERASGMSSLAYFLAKDTIDHFNTVIKPVVYLSMFYFFTNPRSS---FADNYAVLLCLVYCVTGIAYA 1002 (1111)
Q Consensus 928 ~F~~ER--~vf~REr~sG~y~~aYflAk~l~dlp~~ii~piif~si~Yfm~glr~~---~~~~f~~~lll~~~~~~l~~~ 1002 (1111)
....|| ..+.|=+.....+..+.++|.+......++..+++..+.+++ |.+.+ +......+++..++..+++..
T Consensus 81 ~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~-g~~~~~~~~l~~~~~~~l~~~~~~~lgl~ 159 (253)
T TIGR03861 81 SMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFLAIAALV-GVQPPVWGYVSVLPALVLVAFMLGALGLA 159 (253)
T ss_pred HhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 223333 344455555566778999999998776655544444443333 33222 111122223333445567777
Q ss_pred HHHhcCc-hhHH-HHHH-HHHHHhh--hhccCC---cccchhhccccccHHHHHHHHHH
Q 001270 1003 LAIFFEP-GSAQ-LWSV-LLPVVLT--LIATRK---TDSEFMKNIANLCYPKWALQAFV 1053 (1111)
Q Consensus 1003 l~i~~~~-~~a~-l~~~-l~p~~~~--l~~~~~---~iP~~l~Wl~yiS~~rYa~eal~ 1053 (1111)
++..... ...+ +... +.|+++. .+.+.+ ..|.|++|+.+++|..|..|++-
T Consensus 160 la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R 218 (253)
T TIGR03861 160 LSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVR 218 (253)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHH
Confidence 7765432 2222 2221 2222211 222333 35889999999999999999754
No 480
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.06 E-value=2.5e-06 Score=89.52 Aligned_cols=66 Identities=23% Similarity=0.196 Sum_probs=45.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc-ccc-ccEEEEccCCCCCCCCCHHHHHHH
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH-SYK-KIIGFVPQDDIVHGNLTVEENLWF 599 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~-~~r-~~IgyV~Qd~~l~~~LTV~EnL~f 599 (1111)
+||+++|+|+||||||||+++|+|++.+ +.++|.++... ..+ ...|+.+|+...++.+++.+++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999997532 57888764321 122 235677776544444555555543
No 481
>PRK14079 recF recombination protein F; Provisional
Probab=98.05 E-value=7.2e-06 Score=94.94 Aligned_cols=71 Identities=23% Similarity=0.230 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeE
Q 001270 643 ISGGQRKRVHVGLEMV---------MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDL 713 (1111)
Q Consensus 643 LSGGQrQRVaIArALl---------~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~v 713 (1111)
+|+||+|++.||+.|+ .+|++++||||+++||...+..+++.|... ..++|.+|+.+ ..+|++
T Consensus 264 ~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~~ 335 (349)
T PRK14079 264 ASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAALT 335 (349)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCceE
Confidence 7999999999999999 899999999999999999999999888653 23444444433 468999
Q ss_pred EEEeCCcEE
Q 001270 714 VLLAKGGLT 722 (1111)
Q Consensus 714 ilL~~GG~i 722 (1111)
+.+.+ |++
T Consensus 336 ~~~~~-~~~ 343 (349)
T PRK14079 336 LRIEA-GVF 343 (349)
T ss_pred EEEec-cEe
Confidence 99987 444
No 482
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.99 E-value=0.00013 Score=80.90 Aligned_cols=35 Identities=34% Similarity=0.491 Sum_probs=31.7
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
..|+.+.+-+.+|+++.|.|++|+|||||+..++.
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 46888888899999999999999999999998875
No 483
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.97 E-value=5.9e-05 Score=96.40 Aligned_cols=48 Identities=23% Similarity=0.210 Sum_probs=43.0
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCccH
Q 001270 657 MVMEPSLLLLDEPTSGLD-SASSQLLLRALRREALEGVNICLVVHQPSY 704 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD-~~s~~~Il~~L~~la~~G~TVIivtHq~~~ 704 (1111)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.++|++||+++.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 680 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD 680 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 345899999999999999 788999999999998889999999999863
No 484
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.92 E-value=0.00011 Score=76.67 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=35.8
Q ss_pred CCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 001270 643 ISGGQRKRVH--VGLEMVM-EPSLLLLDEPTSGLDSASSQLLLRALRREALEG 692 (1111)
Q Consensus 643 LSGGQrQRVa--IArALl~-~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G 692 (1111)
+|+||+|++. +++.+-. ++++ .|+|++|.....++.+.|.++.+++
T Consensus 148 ~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (196)
T PRK00454 148 LKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAEA 196 (196)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 7999999987 5555443 3443 3999999999999999999887653
No 485
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.79 E-value=3.5e-05 Score=76.83 Aligned_cols=42 Identities=10% Similarity=0.163 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001270 643 ISGGQRKRVHVGLEM-----VMEPSLLLLDEPTSGLDSASSQLLLRALRRE 688 (1111)
Q Consensus 643 LSGGQrQRVaIArAL-----l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~l 688 (1111)
++++++++.....+. ...++++ |+|++|.....++++.|.++
T Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 123 LKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 688988887666553 2345555 99999999999999988764
No 486
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.79 E-value=9e-06 Score=87.03 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCCC
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKAI 554 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~~ 554 (1111)
++|++++|+||||||||||++.|++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999999653
No 487
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.76 E-value=0.00011 Score=71.23 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCcc
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-----EGVNICLVVHQPS 703 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-----~G~TVIivtHq~~ 703 (1111)
++..........++.+|++||.-.. +......+.+.+..... .+..+|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3444455566778999999998765 56667778888877643 4678888888643
No 488
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.75 E-value=5.4e-05 Score=88.49 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=47.0
Q ss_pred EEEEEeEEEEEcCCcceeEe-----------eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 501 EVSFKDLTLTLKGKNKHLLR-----------CVTGKIRPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~-----------~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.+.|+||++.|+.. +.+|+ |+.+.|.+|+.++|+||+|+|||||++.|+..+
T Consensus 130 ri~Fe~LTf~YP~e-r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 130 RVLFENLTPLYPNE-RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CeEEEEeeecCCCc-cceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 58999999999753 46897 999999999999999999999999999999854
No 489
>PRK01889 GTPase RsgA; Reviewed
Probab=97.74 E-value=3.7e-05 Score=89.38 Aligned_cols=78 Identities=21% Similarity=0.371 Sum_probs=58.7
Q ss_pred EeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHH
Q 001270 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLW 598 (1111)
Q Consensus 519 L~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~ 598 (1111)
++.+.-.+++|++++|+|+||+|||||+++|+|... +..|+|.+++.........+.+++++|+..++++ ....++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhc
Confidence 455555678999999999999999999999999665 5789999987543222345679999998877753 4555554
Q ss_pred H
Q 001270 599 F 599 (1111)
Q Consensus 599 f 599 (1111)
+
T Consensus 262 l 262 (356)
T PRK01889 262 L 262 (356)
T ss_pred c
Confidence 4
No 490
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.73 E-value=5.8e-05 Score=89.65 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=68.0
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECC---eeCC---cccc---cccEEEE-----
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILING---KNEP---IHSY---KKIIGFV----- 581 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG---~~~~---~~~~---r~~IgyV----- 581 (1111)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|.... ...|.|.+.| +++. ...+ ..+.++|
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 4689998 99999999999999999999999999997632 2447777755 3321 0111 1235555
Q ss_pred ccCCCC--CCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC
Q 001270 582 PQDDIV--HGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ 628 (1111)
Q Consensus 582 ~Qd~~l--~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~ 628 (1111)
+|++.. .+.+ +...++-..+......+...+...++.++++.++|.
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 888632 2222 333332222221111112344556778889999884
No 491
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.72 E-value=3.4e-05 Score=67.81 Aligned_cols=35 Identities=34% Similarity=0.590 Sum_probs=28.5
Q ss_pred EeeeEEEEeC-CeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 519 LRCVTGKIRP-GRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 519 L~~VS~~I~~-GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
+++.++++.+ |+++.|.|+|||||||||++|.=.+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455677775 5799999999999999999997644
No 492
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.72 E-value=6.6e-05 Score=70.56 Aligned_cols=46 Identities=35% Similarity=0.554 Sum_probs=35.7
Q ss_pred CCCHHHHH-HHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001270 642 GISGGQRK-RVHVGLEMV------M------EPSLLLLDEPTSGLDSASSQLLLRALRR 687 (1111)
Q Consensus 642 gLSGGQrQ-RVaIArALl------~------~P~lLLLDEPTSGLD~~s~~~Il~~L~~ 687 (1111)
++|||||| .+.++.+++ . .|.+++||||+++||+.....++++|++
T Consensus 32 ~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 32 TLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 59999994 444444332 2 3799999999999999999999999874
No 493
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.71 E-value=3.6e-05 Score=81.01 Aligned_cols=36 Identities=33% Similarity=0.613 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE 569 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~ 569 (1111)
|++++|+||||||||||+++|++... ..+.+++..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~~~~~~~~~~ 37 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----TQLLVAHRYI 37 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----CeEEEcCEEC
Confidence 78999999999999999999999643 2577766654
No 494
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.70 E-value=7.9e-05 Score=92.40 Aligned_cols=112 Identities=21% Similarity=0.270 Sum_probs=69.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCCCCC------CceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHH
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKAIAC------KATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHA 601 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~~~~------~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a 601 (1111)
..+.+.|+||||+|||||+++|.+..... ...+-|.++|...... .+ ...+-.++.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d-~~-----------------~i~~~llg~ 235 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWD-PR-----------------EVTNPLLGS 235 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCC-HH-----------------HHhHHhcCC
Confidence 34569999999999999999999854210 1123455665432100 00 001111110
Q ss_pred HhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 001270 602 RCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLL 681 (1111)
Q Consensus 602 ~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~I 681 (1111)
... .....+.+.++.+|+.+..+..+.. +||| +||||| +..||+..+..+
T Consensus 236 -------~~~-~~~~~a~~~l~~~gl~~~~~g~v~~-----asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 236 -------VHD-PIYQGARRDLAETGVPEPKTGLVTD-----AHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred -------ccH-HHHHHHHHHHHHcCCCchhcCchhh-----cCCC----------------eEEEec-cccCCHHHHHHH
Confidence 000 1111234557778887766666654 8888 999999 899999999999
Q ss_pred HHHHHH
Q 001270 682 LRALRR 687 (1111)
Q Consensus 682 l~~L~~ 687 (1111)
++.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 888865
No 495
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.69 E-value=2.6e-05 Score=88.11 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=50.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC--CcccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q 001270 530 RITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE--PIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARC 603 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~--~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~ 603 (1111)
.++||.||||||||||+++|.+++...+.+|.|.+-+.+. .....++..+++ |+..+.+.+++.+.+.+...+
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHH
Confidence 4899999999999999999999764334567776644432 111223345654 666667778888887775544
No 496
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.66 E-value=5.7e-05 Score=87.87 Aligned_cols=73 Identities=19% Similarity=0.183 Sum_probs=45.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCce-eEEEECCeeCC--cccccccEEEEccCCCCCCCCCHHHHHHH
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKAIACKAT-GLILINGKNEP--IHSYKKIIGFVPQDDIVHGNLTVEENLWF 599 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~s-G~I~inG~~~~--~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f 599 (1111)
++|.+++|.||+||||||+|++|++.+...+.. +.|.....++. ....+...+.+.|...--...+..+.|.-
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHH
Confidence 588999999999999999999999975432223 35554444332 22333446788886432112244444443
No 497
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.64 E-value=0.001 Score=73.22 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=34.8
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEecCccH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRA-LRREAL-EGVNICLVVHQPSY 704 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~-L~~la~-~G~TVIivtHq~~~ 704 (1111)
+.+-.++|+||...|=++.....+... ++.+.+ .+..+|++||..+.
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l 168 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHEL 168 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchh
Confidence 345779999999999999988877654 455666 48889999999864
No 498
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=97.64 E-value=0.003 Score=68.67 Aligned_cols=160 Identities=17% Similarity=0.139 Sum_probs=90.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC--CcchHHHHHHHHHHHHHHHHHHHHHHH-HhcCc-
Q 001270 934 LQYWRERASGMSSLAYFLAKDTIDHFNTVIKPVVYLSMFYFFTN--PRSSFADNYAVLLCLVYCVTGIAYALA-IFFEP- 1009 (1111)
Q Consensus 934 ~vf~REr~sG~y~~aYflAk~l~dlp~~ii~piif~si~Yfm~g--lr~~~~~~f~~~lll~~~~~~l~~~l~-i~~~~- 1009 (1111)
..+.|=..+.+.+..+++++.+.......+...+...++.++.| ...++.....+.++......+++..++ .....
T Consensus 118 g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 197 (286)
T COG0842 118 GTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQL 197 (286)
T ss_pred CcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444445555656677777777766544443344444444433 334433333333333444455555334 12111
Q ss_pred hhHHHHHHH--HHH--HhhhhccCCcccchhhccccccHHHHHHHHHHHhccccccCcccccccchhhhcccccCchhHH
Q 001270 1010 GSAQLWSVL--LPV--VLTLIATRKTDSEFMKNIANLCYPKWALQAFVVANAERYYGVWLITRCGLLMKSGYDLQEWGLC 1085 (1111)
Q Consensus 1010 ~~a~l~~~l--~p~--~~~l~~~~~~iP~~l~Wl~yiS~~rYa~eal~ine~~~y~g~~~~~~c~~L~~~G~d~~~~~~~ 1085 (1111)
..++..+.+ .|+ +.+.+.+.+.+|.+++|+.++.|.+|+.+++--.. .+ |......+..
T Consensus 198 ~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~----~~-------------~~~~~~~~~~ 260 (286)
T COG0842 198 QCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVY----LG-------------GWRNDGIWIS 260 (286)
T ss_pred HHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHH----hC-------------CCchhhHHHH
Confidence 122222211 111 12245677889999999999999999999876542 11 1111125568
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 001270 1086 IGILIVYGVVSRIIAFFGMLIFQKR 1110 (1111)
Q Consensus 1086 i~iLi~~~v~frvlayl~L~~~~k~ 1110 (1111)
+++|+++.+++-+++.+.++...++
T Consensus 261 ~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 261 LLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8899999999999999988876654
No 499
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.64 E-value=5.3e-05 Score=79.82 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccH-HHHHhcCeEEEEeC
Q 001270 645 GGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSY-ALFRMFDDLVLLAK 718 (1111)
Q Consensus 645 GGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~-~i~~~~D~vilL~~ 718 (1111)
.|+-+|..||..+..+|+.+..+| +.|||.....+.+.+++...+|.+||+.+|.+.. .+...+|.++++..
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 378999999999999999998887 8899999999999998876567799999998742 23467888877754
No 500
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.64 E-value=0.00091 Score=78.71 Aligned_cols=75 Identities=25% Similarity=0.356 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC-----CHHHHHHH----------HHHHHHHH-hCCCEEEEEecCccHHH
Q 001270 643 ISGGQRKRVHVGLEMVMEPSLLLLDEPTSGL-----DSASSQLL----------LRALRREA-LEGVNICLVVHQPSYAL 706 (1111)
Q Consensus 643 LSGGQrQRVaIArALl~~P~lLLLDEPTSGL-----D~~s~~~I----------l~~L~~la-~~G~TVIivtHq~~~~i 706 (1111)
=||-.-|=.+|..||=...++||+||=||+- |...+..| .+.++.+. +.|.+.|+|+--.. ..
T Consensus 323 ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsg-dy 401 (448)
T PF09818_consen 323 ASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSG-DY 401 (448)
T ss_pred CCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccch-hh
Confidence 5999999999999999999999999999974 55555554 55677774 45988888876544 56
Q ss_pred HHhcCeEEEEeC
Q 001270 707 FRMFDDLVLLAK 718 (1111)
Q Consensus 707 ~~~~D~vilL~~ 718 (1111)
+..+|+|++|++
T Consensus 402 ~~vAD~Vi~Md~ 413 (448)
T PF09818_consen 402 FDVADRVIMMDE 413 (448)
T ss_pred HhhCCEEEEecC
Confidence 789999999975
Done!