Query 001270
Match_columns 1111
No_of_seqs 624 out of 3655
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 19:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 100.0 1.2E-46 4.1E-51 406.0 27.8 220 502-731 2-232 (235)
2 3rlf_A Maltose/maltodextrin im 100.0 2.1E-46 7E-51 429.5 30.7 218 501-732 3-222 (381)
3 3tui_C Methionine import ATP-b 100.0 2.1E-46 7.3E-51 427.1 30.2 220 501-732 24-252 (366)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 1.4E-46 4.6E-51 428.2 28.0 218 501-732 4-227 (359)
5 2olj_A Amino acid ABC transpor 100.0 5.1E-46 1.7E-50 407.9 30.3 217 502-732 25-247 (263)
6 1b0u_A Histidine permease; ABC 100.0 4.6E-46 1.6E-50 407.8 29.6 217 502-732 7-241 (262)
7 3gfo_A Cobalt import ATP-bindi 100.0 3.1E-46 1E-50 412.1 27.8 219 501-732 7-232 (275)
8 2pcj_A ABC transporter, lipopr 100.0 1.2E-45 4E-50 395.4 29.0 212 501-727 4-222 (224)
9 1vpl_A ABC transporter, ATP-bi 100.0 1.7E-45 5.8E-50 402.2 29.8 219 501-733 15-235 (256)
10 1g29_1 MALK, maltose transport 100.0 3.3E-45 1.1E-49 419.5 31.5 218 501-732 3-228 (372)
11 2yyz_A Sugar ABC transporter, 100.0 2.1E-45 7.2E-50 419.0 29.5 217 502-732 4-222 (359)
12 1z47_A CYSA, putative ABC-tran 100.0 2.4E-45 8.1E-50 417.9 29.8 220 500-732 13-234 (355)
13 2it1_A 362AA long hypothetical 100.0 2.4E-45 8.3E-50 418.9 29.8 217 502-732 4-222 (362)
14 1g6h_A High-affinity branched- 100.0 1.1E-45 3.7E-50 403.5 25.6 219 501-730 7-239 (257)
15 4g1u_C Hemin import ATP-bindin 100.0 2.6E-45 8.7E-50 402.8 26.4 216 500-731 10-235 (266)
16 1ji0_A ABC transporter; ATP bi 100.0 4.3E-45 1.5E-49 395.0 27.8 217 501-732 6-227 (240)
17 1oxx_K GLCV, glucose, ABC tran 100.0 2.1E-45 7.1E-50 418.5 26.4 217 502-732 4-229 (353)
18 1v43_A Sugar-binding transport 100.0 3.8E-45 1.3E-49 418.7 27.4 218 501-732 11-230 (372)
19 2yz2_A Putative ABC transporte 100.0 1.4E-44 4.9E-49 396.6 26.2 219 502-733 3-227 (266)
20 3d31_A Sulfate/molybdate ABC t 100.0 1E-44 3.5E-49 411.9 25.9 213 502-732 2-216 (348)
21 2onk_A Molybdate/tungstate ABC 100.0 3.2E-44 1.1E-48 388.6 25.4 212 502-732 2-215 (240)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 5.6E-44 1.9E-48 388.4 27.0 222 501-730 3-230 (250)
23 2ihy_A ABC transporter, ATP-bi 100.0 3.1E-44 1.1E-48 396.8 23.2 220 501-731 21-250 (279)
24 2ff7_A Alpha-hemolysin translo 100.0 7E-44 2.4E-48 387.3 24.1 217 500-732 6-231 (247)
25 2ixe_A Antigen peptide transpo 100.0 5.3E-44 1.8E-48 393.3 22.8 221 501-732 16-244 (271)
26 3nh6_A ATP-binding cassette SU 100.0 7.1E-44 2.4E-48 398.7 23.3 215 501-733 53-277 (306)
27 2zu0_C Probable ATP-dependent 100.0 3.1E-43 1E-47 386.4 27.8 225 501-733 20-254 (267)
28 2nq2_C Hypothetical ABC transp 100.0 6.5E-43 2.2E-47 381.1 28.4 210 501-731 4-215 (253)
29 2qi9_C Vitamin B12 import ATP- 100.0 6.9E-43 2.4E-47 380.2 23.8 207 501-731 4-220 (249)
30 1mv5_A LMRA, multidrug resista 100.0 5E-43 1.7E-47 379.3 19.3 215 502-732 2-225 (243)
31 1sgw_A Putative ABC transporte 100.0 5.4E-43 1.9E-47 373.0 17.0 197 501-716 10-206 (214)
32 2ghi_A Transport protein; mult 100.0 8.3E-42 2.9E-46 373.6 21.9 214 501-732 17-241 (260)
33 2pjz_A Hypothetical protein ST 100.0 1.4E-41 4.7E-46 372.8 23.6 208 502-732 2-214 (263)
34 3qf4_A ABC transporter, ATP-bi 100.0 1.8E-41 6E-46 409.7 23.4 223 501-733 341-566 (587)
35 4a82_A Cystic fibrosis transme 100.0 3.7E-41 1.3E-45 406.2 24.4 216 500-732 338-563 (578)
36 3gd7_A Fusion complex of cysti 100.0 1E-41 3.6E-46 392.4 17.7 214 501-732 19-241 (390)
37 2pze_A Cystic fibrosis transme 100.0 5.3E-41 1.8E-45 360.6 21.2 204 501-732 6-217 (229)
38 3b5x_A Lipid A export ATP-bind 100.0 1.3E-40 4.4E-45 401.7 26.5 216 501-732 341-566 (582)
39 3b60_A Lipid A export ATP-bind 100.0 1.3E-40 4.6E-45 401.6 26.4 217 501-733 341-567 (582)
40 2cbz_A Multidrug resistance-as 100.0 8.1E-41 2.8E-45 361.0 21.3 209 502-732 4-216 (237)
41 2yl4_A ATP-binding cassette SU 100.0 4.1E-40 1.4E-44 398.3 25.4 218 501-732 340-569 (595)
42 3qf4_B Uncharacterized ABC tra 100.0 1.9E-40 6.5E-45 401.5 20.6 215 501-733 354-578 (598)
43 4f4c_A Multidrug resistance pr 100.0 3.1E-39 1.1E-43 420.7 21.4 218 501-733 1076-1304(1321)
44 4f4c_A Multidrug resistance pr 100.0 1.5E-38 5.1E-43 414.3 23.6 222 501-732 415-640 (1321)
45 2bbs_A Cystic fibrosis transme 100.0 6.4E-38 2.2E-42 348.2 18.9 199 501-732 40-246 (290)
46 3g5u_A MCG1178, multidrug resi 100.0 1.6E-37 5.5E-42 403.8 22.9 224 500-733 386-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 4.3E-36 1.5E-40 390.3 23.1 218 501-733 1030-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 5E-35 1.7E-39 354.2 23.0 206 500-733 356-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 6.3E-35 2.2E-39 349.2 20.9 206 500-733 286-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2.8E-34 9.6E-39 343.4 20.7 206 500-731 268-475 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 3E-33 1E-37 338.4 17.7 203 505-733 350-559 (608)
52 3ux8_A Excinuclease ABC, A sub 100.0 2.6E-33 9E-38 343.1 16.0 210 515-732 30-297 (670)
53 3bk7_A ABC transporter ATP-bin 100.0 8.4E-34 2.9E-38 343.5 10.9 192 505-718 95-303 (607)
54 2iw3_A Elongation factor 3A; a 100.0 3.3E-32 1.1E-36 341.2 24.9 200 499-733 433-635 (986)
55 1yqt_A RNAse L inhibitor; ATP- 100.0 1.7E-33 5.8E-38 336.8 11.6 192 505-718 25-233 (538)
56 2iw3_A Elongation factor 3A; a 100.0 2.1E-32 7.3E-37 342.9 13.7 207 501-727 671-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 2.1E-31 7.3E-36 326.3 18.7 199 515-732 334-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 2.7E-30 9.3E-35 312.6 10.8 194 506-719 82-297 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 6.1E-30 2.1E-34 306.0 10.3 189 506-718 4-212 (538)
60 3pih_A Uvrabc system protein A 100.0 2E-28 6.8E-33 306.7 24.0 201 516-732 597-901 (916)
61 2r6f_A Excinuclease ABC subuni 100.0 7.2E-29 2.5E-33 309.1 18.7 209 501-732 629-941 (972)
62 2vf7_A UVRA2, excinuclease ABC 100.0 1.4E-28 4.7E-33 305.8 20.8 216 500-732 501-826 (842)
63 2ygr_A Uvrabc system protein A 100.0 2.5E-28 8.5E-33 305.3 19.0 209 501-732 647-959 (993)
64 4aby_A DNA repair protein RECN 99.9 7.5E-27 2.6E-31 268.8 19.8 203 517-725 49-380 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 99.9 2E-29 7E-34 296.2 -7.9 196 502-731 119-336 (460)
66 1e69_A Chromosome segregation 99.9 3.4E-24 1.1E-28 240.5 13.7 202 520-731 16-311 (322)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2E-23 6.8E-28 238.7 20.2 81 640-723 277-363 (365)
68 3b85_A Phosphate starvation-in 99.9 2.4E-27 8.1E-32 251.4 -12.3 148 514-703 11-159 (208)
69 4gp7_A Metallophosphoesterase; 99.9 6.4E-25 2.2E-29 224.5 3.6 144 521-704 1-161 (171)
70 1tq4_A IIGP1, interferon-induc 99.9 2.1E-25 7.4E-30 258.5 -13.2 170 516-713 36-247 (413)
71 1znw_A Guanylate kinase, GMP k 99.9 9.5E-26 3.2E-30 236.7 -15.0 183 516-720 9-205 (207)
72 1ye8_A Protein THEP1, hypothet 99.9 6.7E-23 2.3E-27 212.0 4.4 138 531-712 2-152 (178)
73 2v9p_A Replication protein E1; 99.8 1E-25 3.6E-30 251.7 -23.6 169 502-738 102-271 (305)
74 3sop_A Neuronal-specific septi 99.8 3.2E-23 1.1E-27 227.9 -6.5 148 531-703 4-151 (270)
75 3b9q_A Chloroplast SRP recepto 99.8 3.7E-22 1.3E-26 222.9 0.7 173 519-720 90-283 (302)
76 2vf7_A UVRA2, excinuclease ABC 99.8 1E-19 3.5E-24 226.5 17.6 109 616-732 358-474 (842)
77 1z6g_A Guanylate kinase; struc 99.8 6E-24 2.1E-28 225.8 -17.7 154 517-690 11-175 (218)
78 2og2_A Putative signal recogni 99.8 2.2E-21 7.4E-26 221.4 0.2 171 520-719 148-339 (359)
79 3qkt_A DNA double-strand break 99.8 4.1E-19 1.4E-23 200.7 17.6 75 641-717 247-327 (339)
80 2dpy_A FLII, flagellum-specifi 99.8 2.1E-22 7.2E-27 235.5 -10.7 190 502-731 132-342 (438)
81 2o5v_A DNA replication and rep 99.8 6.1E-19 2.1E-23 201.3 16.6 81 642-731 265-354 (359)
82 2pt7_A CAG-ALFA; ATPase, prote 99.8 4.9E-21 1.7E-25 216.2 -0.8 131 518-720 160-291 (330)
83 1cr0_A DNA primase/helicase; R 99.8 2.2E-20 7.4E-25 206.0 3.0 182 517-719 23-235 (296)
84 4ad8_A DNA repair protein RECN 99.8 7.3E-19 2.5E-23 209.3 13.4 76 641-719 395-473 (517)
85 2jeo_A Uridine-cytidine kinase 99.8 2.3E-20 7.9E-25 200.9 -0.7 180 514-735 10-189 (245)
86 3pih_A Uvrabc system protein A 99.8 1.1E-18 3.7E-23 219.0 12.7 153 557-732 394-559 (916)
87 3aez_A Pantothenate kinase; tr 99.8 3E-21 1E-25 216.5 -10.1 123 526-675 87-209 (312)
88 2o8b_B DNA mismatch repair pro 99.8 1.2E-19 4E-24 230.8 2.8 172 501-729 750-938 (1022)
89 1tf7_A KAIC; homohexamer, hexa 99.7 1.8E-21 6.2E-26 232.2 -15.5 168 515-718 24-209 (525)
90 2r6f_A Excinuclease ABC subuni 99.7 7.8E-18 2.7E-22 210.5 14.1 135 590-732 451-599 (972)
91 2ehv_A Hypothetical protein PH 99.7 2.3E-19 7.9E-24 190.6 0.2 164 525-718 26-207 (251)
92 2obl_A ESCN; ATPase, hydrolase 99.7 1E-19 3.5E-24 206.8 -5.5 191 502-731 46-253 (347)
93 4a74_A DNA repair and recombin 99.7 9.2E-19 3.2E-23 183.7 2.0 152 524-719 20-200 (231)
94 1tf7_A KAIC; homohexamer, hexa 99.7 9E-18 3.1E-22 200.3 10.8 154 523-719 275-443 (525)
95 2ygr_A Uvrabc system protein A 99.7 1.4E-17 4.7E-22 208.9 12.5 137 589-733 467-617 (993)
96 2qnr_A Septin-2, protein NEDD5 99.7 1.8E-19 6E-24 200.9 -7.1 164 505-703 2-168 (301)
97 3asz_A Uridine kinase; cytidin 99.7 5.1E-20 1.7E-24 192.3 -11.3 146 526-703 3-162 (211)
98 3thx_A DNA mismatch repair pro 99.7 3.8E-17 1.3E-21 205.9 11.9 160 515-731 648-811 (934)
99 1w1w_A Structural maintenance 99.7 5.9E-17 2E-21 188.5 12.3 75 642-718 333-411 (430)
100 2eyu_A Twitching motility prot 99.7 5.3E-18 1.8E-22 185.6 2.2 132 517-718 15-147 (261)
101 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 1.3E-16 4.4E-21 160.7 11.7 76 640-717 55-136 (148)
102 3thx_B DNA mismatch repair pro 99.7 4.7E-18 1.6E-22 213.5 1.3 144 515-712 659-804 (918)
103 1rj9_A FTSY, signal recognitio 99.7 4.1E-18 1.4E-22 190.4 -1.0 149 528-703 101-259 (304)
104 1ewq_A DNA mismatch repair pro 99.7 1.3E-17 4.4E-22 206.6 2.7 141 502-704 551-700 (765)
105 3szr_A Interferon-induced GTP- 99.6 5.8E-19 2E-23 214.3 -11.3 191 501-731 10-235 (608)
106 1pui_A ENGB, probable GTP-bind 99.6 6.4E-18 2.2E-22 175.0 -6.8 176 502-694 4-202 (210)
107 1wb9_A DNA mismatch repair pro 99.6 2.3E-16 7.7E-21 196.5 5.0 154 515-724 594-749 (800)
108 1nlf_A Regulatory protein REPA 99.6 9.7E-16 3.3E-20 167.8 8.5 151 525-703 26-182 (279)
109 1pzn_A RAD51, DNA repair and r 99.6 9.1E-17 3.1E-21 182.7 -0.1 143 518-703 119-287 (349)
110 2w0m_A SSO2452; RECA, SSPF, un 99.6 2E-16 6.9E-21 165.4 2.1 167 517-719 10-192 (235)
111 2qag_C Septin-7; cell cycle, c 99.6 3.2E-17 1.1E-21 190.5 -4.4 164 501-703 11-178 (418)
112 3jvv_A Twitching mobility prot 99.6 4.9E-16 1.7E-20 177.2 3.5 146 505-718 92-245 (356)
113 2i3b_A HCR-ntpase, human cance 99.6 1.7E-17 5.8E-22 173.4 -9.1 155 529-724 1-167 (189)
114 1s96_A Guanylate kinase, GMP k 99.5 6E-16 2.1E-20 165.1 -0.9 150 523-736 10-163 (219)
115 2qag_B Septin-6, protein NEDD5 99.5 4.8E-16 1.6E-20 180.7 -5.1 186 502-701 17-218 (427)
116 3kta_B Chromosome segregation 99.5 1.6E-13 5.5E-18 141.6 12.8 92 641-735 63-160 (173)
117 1zp6_A Hypothetical protein AT 99.5 2.8E-16 9.5E-21 161.1 -8.1 140 525-688 5-147 (191)
118 2cvh_A DNA repair and recombin 99.5 6.6E-14 2.2E-18 145.9 9.5 153 518-719 8-185 (220)
119 2gza_A Type IV secretion syste 99.4 1.7E-15 5.9E-20 172.9 -4.8 137 519-720 165-303 (361)
120 2bdt_A BH3686; alpha-beta prot 99.4 1.2E-16 4E-21 164.3 -13.1 173 529-732 2-183 (189)
121 1nij_A Hypothetical protein YJ 99.4 6.7E-17 2.3E-21 181.3 -16.3 156 530-703 5-190 (318)
122 2bbw_A Adenylate kinase 4, AK4 99.4 2.1E-16 7.3E-21 169.7 -13.7 148 528-692 26-200 (246)
123 1lw7_A Transcriptional regulat 99.4 3.7E-16 1.3E-20 178.0 -15.3 162 518-716 157-341 (365)
124 2ewv_A Twitching motility prot 99.4 6E-14 2E-18 160.9 1.6 130 518-717 127-257 (372)
125 2yhs_A FTSY, cell division pro 99.4 2.3E-14 7.7E-19 168.9 -3.3 154 519-701 283-448 (503)
126 1htw_A HI0065; nucleotide-bind 99.3 4.7E-15 1.6E-19 150.7 -8.9 88 504-599 10-97 (158)
127 2rcn_A Probable GTPase ENGC; Y 99.3 2.8E-13 9.6E-18 154.5 4.5 123 518-657 205-328 (358)
128 2qm8_A GTPase/ATPase; G protei 99.3 3.5E-16 1.2E-20 177.1 -19.7 174 504-690 32-260 (337)
129 1n0w_A DNA repair protein RAD5 99.3 1.5E-12 5.2E-17 137.6 9.1 148 524-719 19-209 (243)
130 3e70_C DPA, signal recognition 99.3 6.6E-14 2.3E-18 158.1 -1.8 143 527-702 127-279 (328)
131 2f1r_A Molybdopterin-guanine d 99.3 1.1E-14 3.9E-19 149.8 -7.9 139 530-693 3-164 (171)
132 3auy_A DNA double-strand break 99.3 7.9E-12 2.7E-16 142.8 12.7 77 641-720 279-362 (371)
133 1odf_A YGR205W, hypothetical 3 99.2 2.8E-13 9.5E-18 150.5 -2.9 131 528-677 30-169 (290)
134 1p9r_A General secretion pathw 99.2 5.9E-15 2E-19 171.6 -17.3 148 503-666 145-315 (418)
135 1udx_A The GTP-binding protein 99.2 3.1E-13 1.1E-17 157.1 -4.0 158 519-701 147-307 (416)
136 2yv5_A YJEQ protein; hydrolase 99.2 5E-13 1.7E-17 148.9 -2.7 122 526-656 162-301 (302)
137 3ec2_A DNA replication protein 99.2 9.6E-12 3.3E-16 126.8 6.4 47 658-704 98-145 (180)
138 2kjq_A DNAA-related protein; s 99.2 1.1E-11 3.7E-16 124.4 5.1 44 658-702 81-125 (149)
139 3lda_A DNA repair protein RAD5 99.2 1.3E-11 4.5E-16 142.8 5.1 130 524-701 173-327 (400)
140 1sxj_E Activator 1 40 kDa subu 99.1 3.2E-11 1.1E-15 135.1 6.9 136 532-704 39-176 (354)
141 2oap_1 GSPE-2, type II secreti 99.1 5.8E-14 2E-18 167.2 -16.4 177 516-710 247-457 (511)
142 3c8u_A Fructokinase; YP_612366 99.1 2.6E-13 9E-18 142.2 -10.0 165 526-736 19-184 (208)
143 1lvg_A Guanylate kinase, GMP k 99.0 5.3E-14 1.8E-18 147.0 -20.9 56 653-717 116-172 (198)
144 1sq5_A Pantothenate kinase; P- 99.0 3.2E-13 1.1E-17 150.7 -16.2 96 502-603 38-155 (308)
145 1u0l_A Probable GTPase ENGC; p 99.0 1.6E-11 5.5E-16 136.6 -2.6 103 526-637 166-291 (301)
146 2x8a_A Nuclear valosin-contain 99.0 1.6E-13 5.4E-18 150.9 -20.8 142 516-685 33-190 (274)
147 1in4_A RUVB, holliday junction 98.9 3.2E-12 1.1E-16 143.9 -12.2 161 514-703 29-203 (334)
148 1t9h_A YLOQ, probable GTPase E 98.9 7E-11 2.4E-15 132.3 -1.8 118 525-650 169-303 (307)
149 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 1.2E-12 4.1E-17 151.0 -18.1 171 525-729 16-209 (392)
150 2r6a_A DNAB helicase, replicat 98.8 9.8E-10 3.4E-14 128.8 4.3 179 517-720 191-400 (454)
151 2dr3_A UPF0273 protein PH0284; 98.8 3.9E-10 1.3E-14 119.2 0.4 60 659-718 127-196 (247)
152 1vma_A Cell division protein F 98.8 2E-09 6.9E-14 120.4 4.1 111 524-689 99-212 (306)
153 2ius_A DNA translocase FTSK; n 98.8 2.2E-10 7.4E-15 136.2 -4.4 164 521-703 159-343 (512)
154 1ls1_A Signal recognition part 98.7 1.9E-08 6.5E-13 111.8 9.6 130 504-688 79-209 (295)
155 3lnc_A Guanylate kinase, GMP k 98.7 1.4E-11 4.7E-16 130.9 -15.3 155 517-689 15-177 (231)
156 1oix_A RAS-related protein RAB 98.7 1.6E-09 5.6E-14 111.3 0.6 144 531-688 31-189 (191)
157 3tr0_A Guanylate kinase, GMP k 98.7 8.1E-10 2.8E-14 114.0 -2.2 69 523-597 1-72 (205)
158 1iy2_A ATP-dependent metallopr 98.7 1E-11 3.4E-16 135.7 -17.9 123 517-663 63-190 (278)
159 2zr9_A Protein RECA, recombina 98.7 2.9E-08 9.9E-13 112.9 9.5 70 649-718 126-229 (349)
160 1ixz_A ATP-dependent metallopr 98.7 1.4E-11 4.8E-16 132.4 -17.7 123 517-663 39-166 (254)
161 3euj_A Chromosome partition pr 98.6 9.2E-09 3.1E-13 121.5 3.2 51 516-569 17-67 (483)
162 3k1j_A LON protease, ATP-depen 98.6 5.4E-10 1.8E-14 135.6 -8.4 161 514-687 45-227 (604)
163 2px0_A Flagellar biosynthesis 98.6 2.2E-08 7.4E-13 111.5 5.1 138 527-721 103-244 (296)
164 1qhl_A Protein (cell division 98.5 5.1E-09 1.7E-13 112.5 -4.5 73 500-584 8-91 (227)
165 2f9l_A RAB11B, member RAS onco 98.4 1.2E-07 3.9E-12 97.6 4.8 37 651-689 130-166 (199)
166 1svm_A Large T antigen; AAA+ f 98.4 3.8E-10 1.3E-14 129.7 -16.0 144 516-671 156-312 (377)
167 3hr8_A Protein RECA; alpha and 98.4 6.7E-08 2.3E-12 110.3 2.3 72 525-598 57-129 (356)
168 4eun_A Thermoresistant glucoki 98.3 2E-08 7E-13 104.2 -3.5 58 523-586 23-82 (200)
169 2qtf_A Protein HFLX, GTP-bindi 98.3 8.3E-08 2.8E-12 109.8 0.8 148 531-690 181-353 (364)
170 2e87_A Hypothetical protein PH 98.1 1.7E-06 5.9E-11 98.1 6.7 60 642-703 231-293 (357)
171 3nwj_A ATSK2; P loop, shikimat 98.1 1.7E-07 5.7E-12 102.0 -3.1 52 501-553 17-72 (250)
172 2ce7_A Cell division protein F 98.1 1.8E-06 6.2E-11 102.0 5.4 59 645-703 93-165 (476)
173 4a1f_A DNAB helicase, replicat 98.1 1.7E-06 5.8E-11 98.1 4.5 128 518-700 35-164 (338)
174 3kta_A Chromosome segregation 98.1 1.3E-06 4.6E-11 88.5 3.3 34 520-554 18-51 (182)
175 2xau_A PRE-mRNA-splicing facto 98.1 2.9E-06 9.8E-11 105.9 6.7 73 643-716 191-265 (773)
176 1jjv_A Dephospho-COA kinase; P 98.0 5.1E-07 1.7E-11 93.6 -0.4 127 531-717 4-131 (206)
177 2j41_A Guanylate kinase; GMP, 98.0 1.3E-06 4.4E-11 89.9 2.4 31 524-554 1-31 (207)
178 3uie_A Adenylyl-sulfate kinase 98.0 1E-07 3.5E-12 98.9 -6.9 59 506-569 4-64 (200)
179 2dy1_A Elongation factor G; tr 97.9 2.9E-06 9.9E-11 104.2 3.5 133 523-704 3-138 (665)
180 3cr8_A Sulfate adenylyltranfer 97.9 2.7E-07 9.1E-12 111.0 -5.8 43 525-569 365-409 (552)
181 4e22_A Cytidylate kinase; P-lo 97.9 8.4E-07 2.9E-11 95.9 -1.8 57 527-585 25-96 (252)
182 2dhr_A FTSH; AAA+ protein, hex 97.9 3E-08 1E-12 117.8 -14.5 128 518-671 55-187 (499)
183 1zu4_A FTSY; GTPase, signal re 97.9 1.7E-06 5.9E-11 97.2 -0.1 77 519-597 95-184 (320)
184 3a00_A Guanylate kinase, GMP k 97.9 2.6E-06 9E-11 87.4 0.8 26 529-554 1-26 (186)
185 3t34_A Dynamin-related protein 97.9 2.3E-05 7.7E-10 88.9 8.5 159 517-700 25-212 (360)
186 3vaa_A Shikimate kinase, SK; s 97.8 7.3E-06 2.5E-10 84.9 3.4 40 514-553 10-49 (199)
187 1knq_A Gluconate kinase; ALFA/ 97.7 1.3E-06 4.4E-11 88.1 -3.8 37 527-569 6-42 (175)
188 3tqc_A Pantothenate kinase; bi 97.7 2.6E-07 8.9E-12 104.0 -10.1 38 517-554 74-117 (321)
189 1fnn_A CDC6P, cell division co 97.7 5.8E-05 2E-09 84.7 8.6 44 659-703 124-170 (389)
190 1v5w_A DMC1, meiotic recombina 97.7 0.00013 4.5E-09 82.5 10.8 140 524-702 117-274 (343)
191 3b9p_A CG5977-PA, isoform A; A 97.7 0.0002 6.7E-09 78.2 11.8 73 644-716 97-186 (297)
192 2vp4_A Deoxynucleoside kinase; 97.6 1.3E-05 4.5E-10 85.1 1.7 38 525-568 16-53 (230)
193 1kgd_A CASK, peripheral plasma 97.6 2.8E-05 9.7E-10 79.3 3.5 36 528-564 4-39 (180)
194 2z43_A DNA repair and recombin 97.6 0.00025 8.6E-09 79.4 11.0 140 524-702 102-258 (324)
195 3bh0_A DNAB-like replicative h 97.5 5.2E-05 1.8E-09 84.7 4.0 131 518-701 57-190 (315)
196 2qt1_A Nicotinamide riboside k 97.4 6.8E-05 2.3E-09 77.7 4.3 29 525-553 17-45 (207)
197 3tau_A Guanylate kinase, GMP k 97.4 7.6E-05 2.6E-09 78.0 3.9 28 527-554 6-33 (208)
198 2z4s_A Chromosomal replication 97.4 0.00013 4.6E-09 85.2 6.0 45 659-703 193-238 (440)
199 1ega_A Protein (GTP-binding pr 97.4 0.0002 6.8E-09 79.5 6.9 53 643-702 101-159 (301)
200 3kl4_A SRP54, signal recogniti 97.3 0.00029 1E-08 82.3 8.0 26 528-553 96-121 (433)
201 1rz3_A Hypothetical protein rb 97.3 3.9E-05 1.3E-09 79.7 0.5 41 526-568 19-59 (201)
202 2qby_A CDC6 homolog 1, cell di 97.3 5.4E-05 1.8E-09 84.5 1.3 26 528-553 44-69 (386)
203 3llm_A ATP-dependent RNA helic 97.1 0.00011 3.7E-09 78.1 1.8 152 527-711 74-228 (235)
204 3cf0_A Transitional endoplasmi 97.1 0.00043 1.5E-08 76.4 5.7 28 526-553 46-73 (301)
205 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00026 8.9E-09 70.6 3.6 31 520-551 15-45 (149)
206 1kag_A SKI, shikimate kinase I 97.1 0.0002 6.9E-09 71.5 2.8 26 528-553 3-28 (173)
207 3ney_A 55 kDa erythrocyte memb 97.0 0.00023 7.9E-09 74.8 3.1 28 526-553 16-43 (197)
208 1mky_A Probable GTP-binding pr 97.0 0.00058 2E-08 79.6 6.4 68 530-597 181-261 (439)
209 2q6t_A DNAB replication FORK h 97.0 0.0056 1.9E-07 71.4 14.3 153 517-700 188-361 (444)
210 3lxx_A GTPase IMAP family memb 96.9 0.0057 1.9E-07 64.7 12.2 43 659-701 111-155 (239)
211 1ypw_A Transitional endoplasmi 96.8 0.0006 2.1E-08 85.5 4.7 29 525-553 234-262 (806)
212 3ice_A Transcription terminati 96.8 0.00011 3.6E-09 84.7 -2.2 51 501-552 133-197 (422)
213 2qag_A Septin-2, protein NEDD5 96.8 3.5E-05 1.2E-09 87.8 -6.5 89 501-599 17-105 (361)
214 2p67_A LAO/AO transport system 96.7 9.9E-05 3.4E-09 83.3 -3.6 49 516-566 43-91 (341)
215 2gj8_A MNME, tRNA modification 96.6 0.002 6.9E-08 64.5 6.2 27 527-553 2-28 (172)
216 2w58_A DNAI, primosome compone 96.6 0.0014 4.9E-08 67.2 4.7 23 530-552 55-77 (202)
217 4eaq_A DTMP kinase, thymidylat 96.6 0.00088 3E-08 71.4 3.2 35 519-553 13-50 (229)
218 1cke_A CK, MSSA, protein (cyti 96.6 0.00098 3.3E-08 69.5 3.4 58 528-585 4-74 (227)
219 3qks_A DNA double-strand break 96.6 0.0011 3.6E-08 69.4 3.6 30 521-551 16-45 (203)
220 3m6a_A ATP-dependent protease 96.6 0.00028 9.7E-09 84.6 -0.9 47 518-567 98-144 (543)
221 1l8q_A Chromosomal replication 96.6 0.0059 2E-07 67.6 9.7 45 658-702 96-141 (324)
222 1u94_A RECA protein, recombina 96.5 0.04 1.4E-06 62.7 16.6 27 525-551 59-85 (356)
223 2pez_A Bifunctional 3'-phospho 96.5 0.0013 4.4E-08 66.5 3.6 38 527-567 3-42 (179)
224 2www_A Methylmalonic aciduria 96.5 0.00057 1.9E-08 77.5 1.1 40 527-568 72-111 (349)
225 3h4m_A Proteasome-activating n 96.5 0.0028 9.7E-08 68.4 6.4 25 528-552 50-74 (285)
226 3bos_A Putative DNA replicatio 96.5 0.0022 7.5E-08 66.5 5.3 44 659-702 103-148 (242)
227 1m2o_B GTP-binding protein SAR 96.5 0.0024 8.1E-08 65.0 5.4 35 517-552 12-46 (190)
228 2qor_A Guanylate kinase; phosp 96.4 0.0012 4E-08 68.4 2.7 28 526-553 9-36 (204)
229 1y63_A LMAJ004144AAA protein; 96.3 0.0015 5E-08 66.7 3.0 32 521-552 2-33 (184)
230 1m7g_A Adenylylsulfate kinase; 96.2 0.0011 3.9E-08 68.9 1.5 40 526-567 22-63 (211)
231 3auy_A DNA double-strand break 96.2 0.0028 9.7E-08 72.1 4.9 31 519-550 16-46 (371)
232 3d8b_A Fidgetin-like protein 1 96.2 0.017 5.8E-07 65.3 11.0 24 529-552 117-140 (357)
233 2i1q_A DNA repair and recombin 96.2 0.015 5.1E-07 64.5 10.3 28 524-551 93-120 (322)
234 1f6b_A SAR1; gtpases, N-termin 96.2 0.00075 2.6E-08 69.3 -0.2 36 516-552 13-48 (198)
235 2wji_A Ferrous iron transport 96.2 0.0058 2E-07 60.4 6.2 23 531-553 5-27 (165)
236 2if2_A Dephospho-COA kinase; a 96.1 0.0022 7.6E-08 65.9 3.0 21 531-551 3-23 (204)
237 2b8t_A Thymidine kinase; deoxy 96.1 0.0054 1.9E-07 65.5 5.8 53 660-717 89-150 (223)
238 2wjg_A FEOB, ferrous iron tran 95.9 0.0068 2.3E-07 60.6 5.4 22 531-552 9-30 (188)
239 1xp8_A RECA protein, recombina 95.9 0.093 3.2E-06 60.0 15.2 27 525-551 70-96 (366)
240 2v1u_A Cell division control p 95.8 0.0034 1.2E-07 69.9 3.0 25 528-552 43-67 (387)
241 2yvu_A Probable adenylyl-sulfa 95.8 0.0046 1.6E-07 62.7 3.5 28 526-553 10-37 (186)
242 3bgw_A DNAB-like replicative h 95.8 0.027 9.4E-07 65.9 10.4 34 518-551 186-219 (444)
243 3cm0_A Adenylate kinase; ATP-b 95.7 0.0049 1.7E-07 62.1 3.5 25 527-551 2-26 (186)
244 1q57_A DNA primase/helicase; d 95.7 0.11 3.6E-06 61.5 15.3 33 519-551 232-264 (503)
245 3t61_A Gluconokinase; PSI-biol 95.7 0.004 1.4E-07 64.0 2.7 24 529-552 18-41 (202)
246 2ffh_A Protein (FFH); SRP54, s 95.7 0.0021 7.3E-08 74.9 0.7 46 520-569 91-136 (425)
247 3kb2_A SPBC2 prophage-derived 95.6 0.0062 2.1E-07 60.2 3.4 22 531-552 3-24 (173)
248 1qhx_A CPT, protein (chloramph 95.6 0.0069 2.4E-07 60.6 3.7 25 529-553 3-27 (178)
249 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.077 2.6E-06 59.2 12.6 25 528-552 44-68 (322)
250 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.029 9.8E-07 59.4 8.7 24 529-552 39-62 (262)
251 1q3t_A Cytidylate kinase; nucl 95.4 0.0074 2.5E-07 63.9 3.4 27 526-552 13-39 (236)
252 2ga8_A Hypothetical 39.9 kDa p 95.4 0.0014 4.7E-08 74.8 -2.5 37 517-553 10-48 (359)
253 2zej_A Dardarin, leucine-rich 95.4 0.0074 2.5E-07 60.8 3.2 22 531-552 4-25 (184)
254 1sxj_C Activator 1 40 kDa subu 95.3 0.0014 4.8E-08 73.2 -2.5 39 515-553 30-70 (340)
255 4dcu_A GTP-binding protein ENG 95.3 0.022 7.5E-07 66.6 7.5 54 646-703 88-142 (456)
256 1np6_A Molybdopterin-guanine d 95.3 0.0079 2.7E-07 61.8 3.2 38 530-567 7-45 (174)
257 2p5t_B PEZT; postsegregational 95.3 0.0056 1.9E-07 65.8 2.1 38 526-567 29-66 (253)
258 1kht_A Adenylate kinase; phosp 95.3 0.0092 3.1E-07 59.9 3.6 24 528-551 2-25 (192)
259 2ohf_A Protein OLA1, GTP-bindi 95.2 0.0091 3.1E-07 69.0 3.8 43 525-567 18-69 (396)
260 1j8m_F SRP54, signal recogniti 95.2 0.0017 5.9E-08 72.1 -2.2 43 522-567 92-134 (297)
261 2rhm_A Putative kinase; P-loop 95.2 0.0087 3E-07 60.4 3.1 25 527-551 3-27 (193)
262 1lv7_A FTSH; alpha/beta domain 95.1 0.0063 2.2E-07 64.9 2.0 26 526-553 44-69 (257)
263 3lw7_A Adenylate kinase relate 95.1 0.011 3.7E-07 58.0 3.3 19 531-549 3-21 (179)
264 3cmw_A Protein RECA, recombina 95.0 0.041 1.4E-06 73.7 9.5 28 525-552 728-755 (1706)
265 1vht_A Dephospho-COA kinase; s 95.0 0.011 3.9E-07 61.3 3.6 24 528-551 3-26 (218)
266 2ze6_A Isopentenyl transferase 95.0 0.012 4E-07 63.5 3.4 23 530-552 2-24 (253)
267 2jaq_A Deoxyguanosine kinase; 94.9 0.013 4.6E-07 59.4 3.4 23 531-553 2-24 (205)
268 3r20_A Cytidylate kinase; stru 94.9 0.013 4.5E-07 62.9 3.5 23 529-551 9-31 (233)
269 2plr_A DTMP kinase, probable t 94.8 0.016 5.5E-07 59.2 3.9 26 528-553 3-28 (213)
270 3trf_A Shikimate kinase, SK; a 94.8 0.015 5.2E-07 58.5 3.5 25 528-552 4-28 (185)
271 1ex7_A Guanylate kinase; subst 94.8 0.014 4.7E-07 60.7 3.2 22 531-552 3-24 (186)
272 2v54_A DTMP kinase, thymidylat 94.8 0.016 5.5E-07 59.1 3.6 26 528-553 3-28 (204)
273 3iij_A Coilin-interacting nucl 94.7 0.015 5E-07 58.6 3.1 25 527-551 9-33 (180)
274 1ly1_A Polynucleotide kinase; 94.7 0.018 6.1E-07 57.3 3.6 22 530-551 3-24 (181)
275 1gtv_A TMK, thymidylate kinase 94.6 0.0083 2.8E-07 61.7 1.0 23 531-553 2-24 (214)
276 2wwf_A Thymidilate kinase, put 94.6 0.018 6.1E-07 59.1 3.5 25 527-551 8-32 (212)
277 1uf9_A TT1252 protein; P-loop, 94.5 0.02 6.9E-07 58.2 3.6 23 529-551 8-30 (203)
278 1via_A Shikimate kinase; struc 94.4 0.017 5.8E-07 57.9 2.9 22 531-552 6-27 (175)
279 2c95_A Adenylate kinase 1; tra 94.4 0.02 6.9E-07 57.8 3.5 25 527-551 7-31 (196)
280 3io5_A Recombination and repai 94.4 0.03 1E-06 63.0 5.1 25 525-550 25-49 (333)
281 1gvn_B Zeta; postsegregational 94.4 0.019 6.5E-07 63.2 3.4 35 528-566 32-66 (287)
282 1nn5_A Similar to deoxythymidy 94.4 0.02 6.8E-07 58.8 3.4 26 526-551 6-31 (215)
283 1tev_A UMP-CMP kinase; ploop, 94.4 0.023 7.9E-07 57.0 3.7 24 528-551 2-25 (196)
284 1nks_A Adenylate kinase; therm 94.3 0.021 7E-07 57.3 3.2 22 531-552 3-24 (194)
285 3k53_A Ferrous iron transport 94.3 0.019 6.4E-07 62.2 3.0 23 531-553 5-27 (271)
286 3ihw_A Centg3; RAS, centaurin, 94.3 0.044 1.5E-06 55.3 5.5 22 531-552 22-43 (184)
287 3cmw_A Protein RECA, recombina 94.1 0.64 2.2E-05 62.5 17.2 34 518-551 370-405 (1706)
288 2ged_A SR-beta, signal recogni 94.0 0.024 8.2E-07 56.9 3.0 23 531-553 50-72 (193)
289 1z2a_A RAS-related protein RAB 94.0 0.025 8.4E-07 54.9 2.9 22 531-552 7-28 (168)
290 1xjc_A MOBB protein homolog; s 94.0 0.026 8.9E-07 57.8 3.2 24 530-553 5-28 (169)
291 2erx_A GTP-binding protein DI- 94.0 0.028 9.5E-07 54.6 3.3 22 531-552 5-26 (172)
292 2nzj_A GTP-binding protein REM 94.0 0.028 9.6E-07 55.0 3.3 22 531-552 6-27 (175)
293 3q72_A GTP-binding protein RAD 93.9 0.024 8.1E-07 55.1 2.7 23 531-553 4-26 (166)
294 1kao_A RAP2A; GTP-binding prot 93.9 0.027 9.3E-07 54.3 3.0 22 531-552 5-26 (167)
295 2z0h_A DTMP kinase, thymidylat 93.9 0.03 1E-06 56.6 3.4 22 531-552 2-23 (197)
296 2ce2_X GTPase HRAS; signaling 93.9 0.026 8.7E-07 54.3 2.7 22 531-552 5-26 (166)
297 2vli_A Antibiotic resistance p 93.8 0.022 7.4E-07 57.0 2.3 25 528-552 4-28 (183)
298 4ag6_A VIRB4 ATPase, type IV s 93.8 0.021 7.2E-07 65.1 2.4 45 660-704 262-309 (392)
299 2bwj_A Adenylate kinase 5; pho 93.8 0.031 1E-06 56.6 3.4 26 526-551 9-34 (199)
300 3ake_A Cytidylate kinase; CMP 93.8 0.029 9.8E-07 57.3 3.2 22 531-552 4-25 (208)
301 1u8z_A RAS-related protein RAL 93.8 0.028 9.5E-07 54.3 2.9 22 531-552 6-27 (168)
302 2qp9_X Vacuolar protein sortin 93.8 0.15 5.3E-06 57.5 9.4 24 529-552 84-107 (355)
303 2dyk_A GTP-binding protein; GT 93.8 0.029 1E-06 54.1 3.0 22 531-552 3-24 (161)
304 3q85_A GTP-binding protein REM 93.7 0.032 1.1E-06 54.4 3.3 21 532-552 5-25 (169)
305 3tw8_B RAS-related protein RAB 93.7 0.029 1E-06 55.1 3.0 22 531-552 11-32 (181)
306 1aky_A Adenylate kinase; ATP:A 93.7 0.036 1.2E-06 57.7 3.7 24 528-551 3-26 (220)
307 3vfd_A Spastin; ATPase, microt 93.7 0.29 9.7E-06 55.7 11.5 25 528-552 147-171 (389)
308 1z0j_A RAB-22, RAS-related pro 93.7 0.031 1E-06 54.3 3.0 23 531-553 8-30 (170)
309 1ek0_A Protein (GTP-binding pr 93.7 0.031 1.1E-06 54.2 2.9 23 531-553 5-27 (170)
310 1z08_A RAS-related protein RAB 93.7 0.031 1.1E-06 54.4 3.0 22 531-552 8-29 (170)
311 1g16_A RAS-related protein SEC 93.6 0.029 1E-06 54.5 2.7 23 531-553 5-27 (170)
312 1ko7_A HPR kinase/phosphatase; 93.6 0.057 2E-06 60.5 5.4 35 516-551 132-166 (314)
313 1ky3_A GTP-binding protein YPT 93.6 0.032 1.1E-06 54.8 3.0 22 531-552 10-31 (182)
314 1c1y_A RAS-related protein RAP 93.6 0.032 1.1E-06 54.0 2.9 22 531-552 5-26 (167)
315 1jal_A YCHF protein; nucleotid 93.6 0.048 1.6E-06 62.4 4.7 38 529-566 2-48 (363)
316 1zd8_A GTP:AMP phosphotransfer 93.6 0.035 1.2E-06 58.2 3.4 25 527-551 5-29 (227)
317 1wms_A RAB-9, RAB9, RAS-relate 93.5 0.033 1.1E-06 54.7 3.0 22 531-552 9-30 (177)
318 1svi_A GTP-binding protein YSX 93.5 0.031 1.1E-06 56.0 2.8 22 531-552 25-46 (195)
319 2fn4_A P23, RAS-related protei 93.5 0.032 1.1E-06 54.8 2.8 22 531-552 11-32 (181)
320 1fzq_A ADP-ribosylation factor 93.5 0.031 1.1E-06 56.1 2.7 22 531-552 18-39 (181)
321 3cmu_A Protein RECA, recombina 93.5 0.16 5.3E-06 69.2 10.0 27 525-551 379-405 (2050)
322 2lkc_A Translation initiation 93.5 0.043 1.5E-06 53.9 3.7 25 528-552 7-31 (178)
323 3pqc_A Probable GTP-binding pr 93.5 0.033 1.1E-06 55.5 2.8 22 531-552 25-46 (195)
324 1xx6_A Thymidine kinase; NESG, 93.5 0.21 7.3E-06 51.9 9.0 52 660-716 81-141 (191)
325 3lxw_A GTPase IMAP family memb 93.5 0.036 1.2E-06 59.4 3.3 57 646-703 88-150 (247)
326 2pbr_A DTMP kinase, thymidylat 93.4 0.04 1.4E-06 55.4 3.4 22 531-552 2-23 (195)
327 3fb4_A Adenylate kinase; psych 93.4 0.039 1.3E-06 57.0 3.4 21 531-551 2-22 (216)
328 3clv_A RAB5 protein, putative; 93.4 0.036 1.2E-06 55.2 3.0 23 531-553 9-31 (208)
329 4dsu_A GTPase KRAS, isoform 2B 93.4 0.037 1.3E-06 54.9 3.0 22 531-552 6-27 (189)
330 1r2q_A RAS-related protein RAB 93.3 0.038 1.3E-06 53.6 2.9 22 531-552 8-29 (170)
331 3co5_A Putative two-component 93.3 0.11 3.9E-06 50.6 6.4 42 660-702 75-116 (143)
332 2cxx_A Probable GTP-binding pr 93.3 0.036 1.2E-06 55.1 2.8 21 532-552 4-24 (190)
333 3dm5_A SRP54, signal recogniti 93.3 0.7 2.4E-05 54.1 14.0 26 528-553 99-124 (443)
334 2cdn_A Adenylate kinase; phosp 93.3 0.047 1.6E-06 55.9 3.7 24 528-551 19-42 (201)
335 1qf9_A UMP/CMP kinase, protein 93.2 0.045 1.6E-06 54.8 3.5 23 529-551 6-28 (194)
336 1ukz_A Uridylate kinase; trans 93.2 0.046 1.6E-06 55.9 3.5 23 529-551 15-37 (203)
337 3b1v_A Ferrous iron uptake tra 93.2 0.044 1.5E-06 59.9 3.6 22 531-552 5-26 (272)
338 1e6c_A Shikimate kinase; phosp 93.2 0.039 1.3E-06 54.6 2.9 22 530-551 3-24 (173)
339 3bc1_A RAS-related protein RAB 93.2 0.04 1.4E-06 54.7 2.9 22 531-552 13-34 (195)
340 2hxs_A RAB-26, RAS-related pro 93.2 0.045 1.5E-06 53.8 3.3 22 531-552 8-29 (178)
341 1zak_A Adenylate kinase; ATP:A 93.2 0.037 1.3E-06 57.7 2.8 24 528-551 4-27 (222)
342 1upt_A ARL1, ADP-ribosylation 93.2 0.041 1.4E-06 53.6 2.9 23 530-552 8-30 (171)
343 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.05 1.7E-06 58.6 3.9 26 527-552 2-27 (260)
344 2pt5_A Shikimate kinase, SK; a 93.1 0.049 1.7E-06 53.7 3.5 21 531-551 2-22 (168)
345 3dl0_A Adenylate kinase; phosp 93.1 0.047 1.6E-06 56.5 3.4 21 531-551 2-22 (216)
346 2oil_A CATX-8, RAS-related pro 93.1 0.042 1.4E-06 55.2 2.9 22 531-552 27-48 (193)
347 1zuh_A Shikimate kinase; alpha 93.1 0.051 1.7E-06 53.9 3.5 23 529-551 7-29 (168)
348 1r8s_A ADP-ribosylation factor 93.1 0.044 1.5E-06 53.1 2.9 20 532-551 3-22 (164)
349 1moz_A ARL1, ADP-ribosylation 93.1 0.029 1E-06 55.5 1.7 22 530-551 19-40 (183)
350 4b4t_J 26S protease regulatory 93.1 0.33 1.1E-05 56.2 10.7 21 532-552 185-205 (405)
351 2y8e_A RAB-protein 6, GH09086P 93.0 0.041 1.4E-06 53.9 2.7 22 531-552 16-37 (179)
352 2a9k_A RAS-related protein RAL 93.0 0.045 1.5E-06 54.0 2.9 22 531-552 20-41 (187)
353 2g6b_A RAS-related protein RAB 92.9 0.046 1.6E-06 53.8 2.9 22 531-552 12-33 (180)
354 2iyv_A Shikimate kinase, SK; t 92.9 0.042 1.5E-06 55.2 2.7 22 530-551 3-24 (184)
355 1z0f_A RAB14, member RAS oncog 92.9 0.047 1.6E-06 53.5 2.9 23 531-553 17-39 (179)
356 3t1o_A Gliding protein MGLA; G 92.9 0.046 1.6E-06 54.5 2.9 23 531-553 16-38 (198)
357 3t5d_A Septin-7; GTP-binding p 92.9 0.043 1.5E-06 59.5 2.8 22 531-552 10-31 (274)
358 3con_A GTPase NRAS; structural 92.8 0.048 1.7E-06 54.5 2.9 22 531-552 23-44 (190)
359 2efe_B Small GTP-binding prote 92.8 0.05 1.7E-06 53.7 3.0 22 531-552 14-35 (181)
360 2bov_A RAla, RAS-related prote 92.8 0.049 1.7E-06 55.0 2.9 22 531-552 16-37 (206)
361 4b4t_L 26S protease subunit RP 92.8 0.57 1.9E-05 54.8 12.2 51 653-703 267-331 (437)
362 1vg8_A RAS-related protein RAB 92.7 0.051 1.8E-06 55.0 3.0 23 531-553 10-32 (207)
363 1wf3_A GTP-binding protein; GT 92.7 0.057 2E-06 59.8 3.5 22 531-552 9-30 (301)
364 1uj2_A Uridine-cytidine kinase 92.6 0.058 2E-06 57.6 3.4 23 530-552 23-45 (252)
365 2bme_A RAB4A, RAS-related prot 92.6 0.05 1.7E-06 54.0 2.7 22 531-552 12-33 (186)
366 2gf0_A GTP-binding protein DI- 92.6 0.051 1.7E-06 54.6 2.8 22 531-552 10-31 (199)
367 3tlx_A Adenylate kinase 2; str 92.6 0.066 2.2E-06 57.2 3.7 24 528-551 28-51 (243)
368 1ksh_A ARF-like protein 2; sma 92.6 0.057 2E-06 53.8 3.1 25 528-552 17-41 (186)
369 2xtp_A GTPase IMAP family memb 92.6 0.054 1.8E-06 57.8 3.1 22 531-552 24-45 (260)
370 1nrj_B SR-beta, signal recogni 92.6 0.054 1.8E-06 55.6 2.9 23 531-553 14-36 (218)
371 3tkl_A RAS-related protein RAB 92.5 0.056 1.9E-06 54.1 2.9 22 531-552 18-39 (196)
372 2gf9_A RAS-related protein RAB 92.5 0.057 2E-06 54.1 2.9 23 531-553 24-46 (189)
373 3bwd_D RAC-like GTP-binding pr 92.5 0.069 2.4E-06 52.7 3.5 22 531-552 10-31 (182)
374 4b4t_K 26S protease regulatory 92.5 0.49 1.7E-05 55.2 11.1 23 530-552 207-229 (428)
375 3iev_A GTP-binding protein ERA 92.4 0.063 2.2E-06 59.5 3.5 22 531-552 12-33 (308)
376 3cbq_A GTP-binding protein REM 92.4 0.049 1.7E-06 55.6 2.4 22 531-552 25-46 (195)
377 3kkq_A RAS-related protein M-R 92.4 0.06 2E-06 53.4 2.9 22 531-552 20-41 (183)
378 1mh1_A RAC1; GTP-binding, GTPa 92.4 0.06 2.1E-06 53.2 2.9 22 531-552 7-28 (186)
379 1m7b_A RND3/RHOE small GTP-bin 92.3 0.057 2E-06 54.0 2.7 22 531-552 9-30 (184)
380 1zbd_A Rabphilin-3A; G protein 92.3 0.067 2.3E-06 54.2 3.3 23 531-553 10-32 (203)
381 3iby_A Ferrous iron transport 92.3 0.06 2.1E-06 58.1 3.0 22 531-552 3-24 (256)
382 2fg5_A RAB-22B, RAS-related pr 92.3 0.059 2E-06 54.4 2.8 23 531-553 25-47 (192)
383 2grj_A Dephospho-COA kinase; T 92.3 0.072 2.5E-06 55.3 3.4 23 529-551 12-34 (192)
384 2il1_A RAB12; G-protein, GDP, 92.2 0.064 2.2E-06 54.2 2.9 22 531-552 28-49 (192)
385 2wsm_A Hydrogenase expression/ 92.2 0.064 2.2E-06 55.3 3.0 22 531-552 32-53 (221)
386 1z06_A RAS-related protein RAB 92.2 0.066 2.3E-06 53.7 3.0 22 531-552 22-43 (189)
387 3llu_A RAS-related GTP-binding 92.2 0.068 2.3E-06 54.2 3.1 23 531-553 22-44 (196)
388 4dhe_A Probable GTP-binding pr 92.1 0.037 1.3E-06 56.9 1.1 23 531-553 31-53 (223)
389 3oes_A GTPase rhebl1; small GT 92.1 0.062 2.1E-06 54.6 2.7 23 531-553 26-48 (201)
390 3t5g_A GTP-binding protein RHE 92.1 0.064 2.2E-06 53.1 2.7 21 531-551 8-28 (181)
391 1jwy_B Dynamin A GTPase domain 92.1 0.07 2.4E-06 58.4 3.3 23 531-553 26-48 (315)
392 4bas_A ADP-ribosylation factor 92.1 0.07 2.4E-06 53.5 3.0 22 531-552 19-40 (199)
393 2xb4_A Adenylate kinase; ATP-b 92.1 0.077 2.6E-06 55.7 3.4 21 531-551 2-22 (223)
394 2h57_A ADP-ribosylation factor 92.0 0.056 1.9E-06 54.2 2.3 22 531-552 23-44 (190)
395 2dby_A GTP-binding protein; GD 92.0 0.063 2.2E-06 61.4 2.9 21 532-552 4-24 (368)
396 2bcg_Y Protein YP2, GTP-bindin 92.0 0.064 2.2E-06 54.5 2.7 22 531-552 10-31 (206)
397 1jbk_A CLPB protein; beta barr 92.0 0.088 3E-06 51.8 3.6 25 528-552 42-66 (195)
398 1zj6_A ADP-ribosylation factor 92.0 0.073 2.5E-06 53.3 3.0 21 531-551 18-38 (187)
399 3dz8_A RAS-related protein RAB 92.0 0.066 2.3E-06 53.9 2.7 23 531-553 25-47 (191)
400 2a5j_A RAS-related protein RAB 92.0 0.071 2.4E-06 53.6 2.9 22 531-552 23-44 (191)
401 2o52_A RAS-related protein RAB 92.0 0.073 2.5E-06 54.2 3.0 22 531-552 27-48 (200)
402 2f6r_A COA synthase, bifunctio 92.0 0.073 2.5E-06 58.2 3.2 22 530-551 76-97 (281)
403 1x3s_A RAS-related protein RAB 92.0 0.072 2.5E-06 53.1 2.9 23 531-553 17-39 (195)
404 2qu8_A Putative nucleolar GTP- 92.0 0.073 2.5E-06 55.5 3.1 22 531-552 31-52 (228)
405 2cjw_A GTP-binding protein GEM 91.9 0.073 2.5E-06 54.1 2.9 21 531-551 8-28 (192)
406 1a7j_A Phosphoribulokinase; tr 91.9 0.047 1.6E-06 60.3 1.5 24 528-551 4-27 (290)
407 3cph_A RAS-related protein SEC 91.9 0.074 2.5E-06 54.1 2.9 22 531-552 22-43 (213)
408 3a8t_A Adenylate isopentenyltr 91.9 0.13 4.3E-06 58.3 5.1 26 528-553 39-64 (339)
409 1zd9_A ADP-ribosylation factor 91.8 0.075 2.6E-06 53.4 2.9 22 531-552 24-45 (188)
410 3reg_A RHO-like small GTPase; 91.8 0.076 2.6E-06 53.5 2.9 23 531-553 25-47 (194)
411 2atv_A RERG, RAS-like estrogen 91.8 0.077 2.6E-06 53.6 3.0 22 531-552 30-51 (196)
412 2h17_A ADP-ribosylation factor 91.8 0.068 2.3E-06 53.3 2.6 22 531-552 23-44 (181)
413 3i8s_A Ferrous iron transport 91.8 0.075 2.6E-06 57.8 3.1 22 531-552 5-26 (274)
414 2f7s_A C25KG, RAS-related prot 91.8 0.13 4.3E-06 52.8 4.6 23 531-553 27-49 (217)
415 3a1s_A Iron(II) transport prot 91.8 0.081 2.8E-06 57.1 3.3 22 531-552 7-28 (258)
416 3be4_A Adenylate kinase; malar 91.8 0.083 2.9E-06 55.0 3.3 24 528-551 4-27 (217)
417 1ltq_A Polynucleotide kinase; 91.8 0.089 3E-06 57.2 3.6 22 530-551 3-24 (301)
418 2p5s_A RAS and EF-hand domain 91.7 0.079 2.7E-06 53.8 2.9 22 531-552 30-51 (199)
419 3tqf_A HPR(Ser) kinase; transf 91.7 0.18 6.1E-06 52.2 5.5 35 516-551 4-38 (181)
420 3v9p_A DTMP kinase, thymidylat 91.7 0.073 2.5E-06 56.9 2.7 28 526-553 22-49 (227)
421 4edh_A DTMP kinase, thymidylat 91.7 0.1 3.5E-06 55.0 3.8 27 527-553 4-30 (213)
422 1e4v_A Adenylate kinase; trans 91.6 0.087 3E-06 54.6 3.2 21 531-551 2-22 (214)
423 2q3h_A RAS homolog gene family 91.6 0.092 3.2E-06 53.0 3.3 22 531-552 22-43 (201)
424 2iwr_A Centaurin gamma 1; ANK 91.5 0.067 2.3E-06 52.8 2.1 22 531-552 9-30 (178)
425 2ew1_A RAS-related protein RAB 91.5 0.078 2.7E-06 54.6 2.7 22 531-552 28-49 (201)
426 2fv8_A H6, RHO-related GTP-bin 91.5 0.08 2.7E-06 54.2 2.8 22 531-552 27-48 (207)
427 4fcw_A Chaperone protein CLPB; 91.5 0.094 3.2E-06 57.0 3.5 26 528-553 46-71 (311)
428 2aka_B Dynamin-1; fusion prote 91.5 0.078 2.7E-06 57.4 2.8 23 531-553 28-50 (299)
429 2qmh_A HPR kinase/phosphorylas 91.5 0.15 5E-06 53.9 4.7 35 517-552 23-57 (205)
430 2j1l_A RHO-related GTP-binding 91.4 0.093 3.2E-06 54.1 3.1 22 531-552 36-57 (214)
431 3c5c_A RAS-like protein 12; GD 91.3 0.094 3.2E-06 52.8 3.0 22 531-552 23-44 (187)
432 2fh5_B SR-beta, signal recogni 91.3 0.092 3.1E-06 53.7 2.9 22 531-552 9-30 (214)
433 2fu5_C RAS-related protein RAB 91.3 0.063 2.2E-06 53.2 1.6 22 531-552 10-31 (183)
434 1ak2_A Adenylate kinase isoenz 91.2 0.11 3.9E-06 54.6 3.6 24 528-551 15-38 (233)
435 3def_A T7I23.11 protein; chlor 91.2 0.094 3.2E-06 56.4 3.1 23 531-553 38-60 (262)
436 3zvl_A Bifunctional polynucleo 91.2 0.1 3.4E-06 60.4 3.4 25 527-551 256-280 (416)
437 3cmu_A Protein RECA, recombina 91.2 0.29 1E-05 66.5 8.2 34 519-552 720-755 (2050)
438 1gwn_A RHO-related GTP-binding 91.1 0.091 3.1E-06 54.2 2.7 22 531-552 30-51 (205)
439 2orv_A Thymidine kinase; TP4A 91.1 0.62 2.1E-05 50.1 9.2 53 659-717 89-150 (234)
440 2b6h_A ADP-ribosylation factor 91.0 0.095 3.3E-06 53.1 2.7 21 531-551 31-51 (192)
441 2ocp_A DGK, deoxyguanosine kin 91.0 0.12 4.2E-06 54.6 3.6 26 528-553 1-26 (241)
442 2j9r_A Thymidine kinase; TK1, 91.0 0.64 2.2E-05 49.3 9.1 53 660-717 101-162 (214)
443 2gco_A H9, RHO-related GTP-bin 91.0 0.096 3.3E-06 53.3 2.7 22 531-552 27-48 (201)
444 3lv8_A DTMP kinase, thymidylat 90.9 0.12 4E-06 55.6 3.4 26 528-553 26-51 (236)
445 1h65_A Chloroplast outer envel 90.9 0.1 3.6E-06 56.2 3.0 23 531-553 41-63 (270)
446 2atx_A Small GTP binding prote 90.8 0.11 3.6E-06 52.3 2.8 22 531-552 20-41 (194)
447 3d3q_A TRNA delta(2)-isopenten 90.8 0.12 4E-06 58.6 3.4 24 530-553 8-31 (340)
448 2zts_A Putative uncharacterize 90.7 0.16 5.5E-06 52.9 4.1 45 658-702 133-182 (251)
449 4tmk_A Protein (thymidylate ki 90.7 0.13 4.5E-06 54.3 3.5 26 528-553 2-27 (213)
450 2p65_A Hypothetical protein PF 90.6 0.11 3.9E-06 51.1 2.8 24 529-552 43-66 (187)
451 2r8r_A Sensor protein; KDPD, P 90.6 0.094 3.2E-06 56.2 2.3 47 655-701 79-126 (228)
452 4djt_A GTP-binding nuclear pro 90.6 0.061 2.1E-06 55.2 0.8 22 531-552 13-34 (218)
453 3exa_A TRNA delta(2)-isopenten 90.6 0.14 4.9E-06 57.4 3.8 25 529-553 3-27 (322)
454 1njg_A DNA polymerase III subu 90.6 0.14 4.9E-06 52.0 3.6 43 659-703 125-167 (250)
455 2hf9_A Probable hydrogenase ni 90.5 0.12 4.1E-06 53.4 3.0 22 531-552 40-61 (226)
456 2h92_A Cytidylate kinase; ross 90.4 0.12 4.3E-06 53.3 3.0 24 529-552 3-26 (219)
457 3umf_A Adenylate kinase; rossm 90.4 0.15 5E-06 54.2 3.6 26 526-551 26-51 (217)
458 1p5z_B DCK, deoxycytidine kina 90.4 0.097 3.3E-06 56.2 2.2 27 527-553 22-48 (263)
459 3cpj_B GTP-binding protein YPT 90.4 0.13 4.3E-06 53.4 3.0 23 531-553 15-37 (223)
460 3tmk_A Thymidylate kinase; pho 90.4 0.14 4.8E-06 54.3 3.4 27 527-553 3-29 (216)
461 3ld9_A DTMP kinase, thymidylat 90.4 0.16 5.4E-06 54.2 3.8 27 527-553 19-45 (223)
462 1sky_E F1-ATPase, F1-ATP synth 90.3 0.15 5.1E-06 60.1 3.8 33 518-551 141-173 (473)
463 2g3y_A GTP-binding protein GEM 90.3 0.14 4.9E-06 53.5 3.3 22 531-552 39-60 (211)
464 2x77_A ADP-ribosylation factor 90.3 0.09 3.1E-06 52.6 1.7 21 531-551 24-44 (189)
465 2yc2_C IFT27, small RAB-relate 90.2 0.061 2.1E-06 54.3 0.4 22 531-552 22-43 (208)
466 2hup_A RAS-related protein RAB 90.1 0.13 4.4E-06 52.5 2.8 22 531-552 31-52 (201)
467 2j0v_A RAC-like GTP-binding pr 89.7 0.14 4.9E-06 52.2 2.7 22 531-552 11-32 (212)
468 3cnl_A YLQF, putative uncharac 89.7 0.16 5.5E-06 55.1 3.3 24 530-553 100-123 (262)
469 3crm_A TRNA delta(2)-isopenten 89.7 0.17 5.7E-06 57.0 3.4 24 530-553 6-29 (323)
470 4gzl_A RAS-related C3 botulinu 89.7 0.14 4.9E-06 52.3 2.7 22 531-552 32-53 (204)
471 3q3j_B RHO-related GTP-binding 89.5 0.16 5.6E-06 52.4 2.9 22 531-552 29-50 (214)
472 3euj_A Chromosome partition pr 89.4 0.36 1.2E-05 57.1 6.1 69 642-717 379-464 (483)
473 3sr0_A Adenylate kinase; phosp 88.9 0.22 7.5E-06 52.3 3.4 21 531-551 2-22 (206)
474 3foz_A TRNA delta(2)-isopenten 88.9 0.23 8E-06 55.6 3.8 24 529-552 10-33 (316)
475 3eph_A TRNA isopentenyltransfe 88.4 0.24 8.2E-06 57.4 3.6 23 530-552 3-25 (409)
476 2orw_A Thymidine kinase; TMTK, 87.9 0.28 9.7E-06 50.3 3.4 38 660-702 76-113 (184)
477 2chg_A Replication factor C sm 87.8 0.27 9.3E-06 49.4 3.2 41 660-702 102-142 (226)
478 1puj_A YLQF, conserved hypothe 87.7 0.3 1E-05 53.6 3.6 25 529-553 120-144 (282)
479 3th5_A RAS-related C3 botulinu 87.5 0.11 3.6E-06 52.9 0.0 21 531-551 32-52 (204)
480 2x2e_A Dynamin-1; nitration, h 87.4 0.19 6.4E-06 56.6 1.9 23 531-553 33-55 (353)
481 3p32_A Probable GTPase RV1496/ 87.4 0.31 1E-05 55.0 3.6 24 529-552 79-102 (355)
482 1sxj_D Activator 1 41 kDa subu 87.3 0.26 8.8E-06 54.3 2.9 42 660-703 133-174 (353)
483 2hjg_A GTP-binding protein ENG 87.3 0.25 8.5E-06 57.3 2.9 22 531-552 5-26 (436)
484 1wxq_A GTP-binding protein; st 87.3 0.27 9.1E-06 56.7 3.1 76 617-708 181-259 (397)
485 3gj0_A GTP-binding nuclear pro 87.3 0.19 6.5E-06 51.8 1.7 20 532-551 18-38 (221)
486 3r7w_A Gtpase1, GTP-binding pr 87.3 0.31 1.1E-05 53.8 3.5 24 529-552 3-26 (307)
487 3l0i_B RAS-related protein RAB 87.2 0.072 2.5E-06 54.0 -1.5 22 531-552 35-56 (199)
488 1ypw_A Transitional endoplasmi 87.0 0.093 3.2E-06 65.9 -1.0 31 523-553 505-535 (806)
489 4hlc_A DTMP kinase, thymidylat 86.9 0.38 1.3E-05 50.3 3.7 25 529-553 2-26 (205)
490 3n70_A Transport activator; si 86.8 0.34 1.2E-05 47.2 3.2 41 660-702 76-116 (145)
491 3ec1_A YQEH GTPase; atnos1, at 86.7 0.28 9.6E-06 55.8 2.8 25 528-552 161-185 (369)
492 1mky_A Probable GTP-binding pr 86.5 0.63 2.2E-05 54.0 5.7 22 531-552 3-24 (439)
493 3syl_A Protein CBBX; photosynt 86.5 0.36 1.2E-05 52.4 3.4 25 528-552 66-90 (309)
494 2qpt_A EH domain-containing pr 86.4 0.3 1E-05 58.6 3.0 23 531-553 67-89 (550)
495 2vhj_A Ntpase P4, P4; non- hyd 86.4 0.41 1.4E-05 53.9 3.9 28 524-551 118-145 (331)
496 2r62_A Cell division protease 86.4 0.17 5.8E-06 54.0 0.7 21 532-552 47-67 (268)
497 1f5n_A Interferon-induced guan 86.3 0.3 1E-05 59.2 2.9 25 529-553 38-62 (592)
498 3pxi_A Negative regulator of g 86.2 1.1 3.8E-05 55.5 8.0 116 527-716 519-659 (758)
499 1lnz_A SPO0B-associated GTP-bi 86.0 0.4 1.4E-05 54.2 3.6 33 520-552 149-181 (342)
500 3h2y_A GTPase family protein; 85.8 0.29 1E-05 55.7 2.4 25 528-552 159-183 (368)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.2e-46 Score=406.02 Aligned_cols=220 Identities=24% Similarity=0.339 Sum_probs=186.4
Q ss_pred EEEEeEEEEEcCCc--ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc---c---
Q 001270 502 VSFKDLTLTLKGKN--KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH---S--- 573 (1111)
Q Consensus 502 L~~~nLs~~y~~~~--k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~---~--- 573 (1111)
|+++||+++|+++. +.+|+||||+|++||+++|+|||||||||||++|+|+.. |++|+|.++|+++... .
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTK 79 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHH
Confidence 68899999996432 469999999999999999999999999999999999775 6899999999986321 1
Q ss_pred -ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHH
Q 001270 574 -YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV-RDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 574 -~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~rgLSGGQrQRV 651 (1111)
.++.||||||++.+++.+||+||+.++............+..+++.++++.+||.+. .++++.+ |||||||||
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~QRv 154 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ-----LSGGQQQRV 154 (235)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGG-----SCHHHHHHH
T ss_pred HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhh-----CCHHHHHHH
Confidence 134699999999999999999999997654321223344555678899999999875 4777765 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+||||++ . .+++|++++|.+ |+++..+++++
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~-G~i~~~~~~~~ 231 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V-ARFGERIIYLKD-GEVEREEKLRG 231 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-H-HTTSSEEEEEET-TEEEEEEECC-
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH-H-HHhCCEEEEEEC-CEEEEEcChhh
Confidence 9999999999999999999999999999999999999765 999999999987 3 489999999987 57888888766
Q ss_pred H
Q 001270 731 V 731 (1111)
Q Consensus 731 l 731 (1111)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.1e-46 Score=429.52 Aligned_cols=218 Identities=28% Similarity=0.374 Sum_probs=195.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIG 579 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 579 (1111)
.|+++||+++| +.+.+|+||||+|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++.. ...++.||
T Consensus 3 ~l~~~~l~~~y--g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVG 78 (381)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEE
T ss_pred EEEEEeEEEEE--CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEE
Confidence 37899999999 45789999999999999999999999999999999999875 689999999998642 23457899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
||||++.+++++||+|||.|+...+ ...+.+..++++++++.+||.+..++++.+ |||||||||+|||||+.
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~-----LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGGG-----SCHHHHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhH-----CCHHHHHHHHHHHHHHc
Confidence 9999999999999999999987654 244555667899999999999999988876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+|+|||||||||+||+..+..+++.|+++.++ |+|||+||||+++ +..++|++++|.+ |+++..|+++++.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~e-a~~~aDri~vl~~-G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE-AMTLADKIVVLDA-GRVAQVGKPLELY 222 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-HHHhCCEEEEEEC-CEEEEEeCHHHHH
Confidence 99999999999999999999999999999765 9999999999975 5689999999987 5889999999874
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.1e-46 Score=427.10 Aligned_cols=220 Identities=24% Similarity=0.367 Sum_probs=194.4
Q ss_pred EEEEEeEEEEEcCC--cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc------
Q 001270 501 EVSFKDLTLTLKGK--NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH------ 572 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~--~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~------ 572 (1111)
.|+++||+++|+.+ ...+|+||||+|++||++||+||||||||||||+|+|+.. |++|+|.++|+++...
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCCHHHHH
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHH
Confidence 48899999999643 3579999999999999999999999999999999999875 6899999999986421
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 001270 573 SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 573 ~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
.+|+.||||||++.+++.+||+||+.|+.... ...+.+..++++++++.+||.+..++++++ |||||||||+
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~-----LSGGqkQRVa 173 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVA 173 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTTT-----SCHHHHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHH
Confidence 24678999999999999999999999987643 234555567899999999999988888765 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
|||||+.+|+||||||||||||+.++..|+++|+++.+ .|+|||+||||++. +.++||++++|.+ |++++.|+++++
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~-~~~~aDrv~vl~~-G~iv~~g~~~ev 251 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISN-GELIEQDTVSEV 251 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHH-HHHHCSEEEEEET-TEEEECCBHHHH
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHH
Confidence 99999999999999999999999999999999999975 49999999999975 5688999999986 589999999886
Q ss_pred H
Q 001270 732 E 732 (1111)
Q Consensus 732 ~ 732 (1111)
.
T Consensus 252 ~ 252 (366)
T 3tui_C 252 F 252 (366)
T ss_dssp H
T ss_pred H
Confidence 4
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.4e-46 Score=428.23 Aligned_cols=218 Identities=24% Similarity=0.393 Sum_probs=192.2
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC----C-ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE----P-IHSYK 575 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~----~-~~~~r 575 (1111)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++ . ....+
T Consensus 4 ~l~i~~ls~~y--~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~~~~~ 79 (359)
T 3fvq_A 4 ALHIGHLSKSF--QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLPVRE 79 (359)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBCCGGG
T ss_pred EEEEEeEEEEE--CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECcccccccchhh
Confidence 37899999999 45789999999999999999999999999999999999875 6899999999875 2 12346
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
+.||||||++.+++++||+|||.|+...+ ...+.+..++++++++.+||.+..++++.+ |||||||||+|||
T Consensus 80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~-----LSGGq~QRValAr 151 (359)
T 3fvq_A 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPHE-----LSGGQQQRAALAR 151 (359)
T ss_dssp SCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGGG-----SCHHHHHHHHHHH
T ss_pred CCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHH
Confidence 78999999999999999999999986533 223445556789999999999999988876 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREA-LEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la-~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||+.+|+||||||||||||+..+..+++.|+++. +.|+|||+||||+++ +..++|++++|.+ |+++..|+++++.
T Consensus 152 AL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~e-a~~~aDri~vl~~-G~i~~~g~~~el~ 227 (359)
T 3fvq_A 152 ALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREE-ALQYADRIAVMKQ-GRILQTASPHELY 227 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHHCCEEEEEEC-CEEEEEeCHHHHH
Confidence 9999999999999999999999999999888775 569999999999975 4689999999986 5899999998874
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=5.1e-46 Score=407.88 Aligned_cols=217 Identities=26% Similarity=0.435 Sum_probs=189.7
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC--c---ccccc
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP--I---HSYKK 576 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~--~---~~~r~ 576 (1111)
|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|++. |++|+|.++|+++. . ..+++
T Consensus 25 l~i~~l~~~y--~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 25 IDVHQLKKSF--GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp EEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTCCHHHHHH
T ss_pred EEEEeEEEEE--CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccccHHHHhC
Confidence 8899999999 45679999999999999999999999999999999999875 68999999998863 1 12456
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHH-HhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHA-RCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a-~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
.||||||++.+++.+||+||+.++. ... .....+..++++++++.+||.+..++++.+ |||||||||+|||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~lAr 172 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPDS-----LSGGQAQRVAIAR 172 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChhh-----CCHHHHHHHHHHH
Confidence 7999999999999999999999864 221 122333445788999999999888888765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||++. +.+++|++++|.+ |++++.|+++++.
T Consensus 173 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~~ 247 (263)
T 2olj_A 173 ALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF-AREVGDRVLFMDG-GYIIEEGKPEDLF 247 (263)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHHH
Confidence 9999999999999999999999999999999998779999999999875 4578999999987 5788999988764
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.6e-46 Score=407.76 Aligned_cols=217 Identities=27% Similarity=0.403 Sum_probs=189.7
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----------
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---------- 571 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---------- 571 (1111)
|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|++. |++|+|.++|+++..
T Consensus 7 l~i~~l~~~y--~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 7 LHVIDLHKRY--GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp EEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEeeEEEEE--CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccccccccccccc
Confidence 7899999999 45679999999999999999999999999999999999875 689999999988641
Q ss_pred ------ccccccEEEEccCCCCCCCCCHHHHHHHHH-HhhccccchHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCC
Q 001270 572 ------HSYKKIIGFVPQDDIVHGNLTVEENLWFHA-RCRLSAHLAKADKVLVIERVIDTLGLQTV-RDSLVGTVEKRGI 643 (1111)
Q Consensus 572 ------~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a-~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~rgL 643 (1111)
..+++.||||||++.+++.+||+||+.++. ... .....+..++++++++.+||.+. .++++++ |
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----L 154 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYPVH-----L 154 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG-----S
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCccc-----C
Confidence 124567999999999999999999999864 322 12233444578899999999988 8888766 9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEE
Q 001270 644 SGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTV 723 (1111)
Q Consensus 644 SGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv 723 (1111)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||++. +.+++|++++|.+ |+++
T Consensus 155 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~-G~i~ 232 (262)
T 1b0u_A 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQ-GKIE 232 (262)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH-HHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999998789999999999875 4578999999987 5789
Q ss_pred EecCHhhHH
Q 001270 724 YHGSVKKVE 732 (1111)
Q Consensus 724 ~~G~~~~l~ 732 (1111)
+.|+++++.
T Consensus 233 ~~g~~~~~~ 241 (262)
T 1b0u_A 233 EEGDPEQVF 241 (262)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHH
Confidence 999988764
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.1e-46 Score=412.08 Aligned_cols=219 Identities=26% Similarity=0.405 Sum_probs=190.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-----cccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-----HSYK 575 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-----~~~r 575 (1111)
.|+++||+++|++ .+.+|+||||+|++||+++|+||||||||||+|+|+|++. +++|+|.++|+++.. ..++
T Consensus 7 ~l~i~~ls~~y~~-~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 7 ILKVEELNYNYSD-GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEECTT-SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHHHHHHHH
T ss_pred EEEEEEEEEEECC-CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccccHHHHh
Confidence 4899999999953 3469999999999999999999999999999999999875 689999999998731 2356
Q ss_pred ccEEEEccCCC-CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 001270 576 KIIGFVPQDDI-VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVG 654 (1111)
Q Consensus 576 ~~IgyV~Qd~~-l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIA 654 (1111)
+.||||||++. .+..+||+||+.|+.... .....+..++++++++.+||.+..++.+++ |||||||||+||
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~iA 155 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIA 155 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHH
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCccc-----CCHHHHHHHHHH
Confidence 78999999973 344789999999987542 234455556789999999999988888876 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 655 LEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREA-LEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 655 rALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la-~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|||+.+|+||||||||+|||+.++..+++.|++++ ++|+|||+|||+++.. .+++|++++|.+ |++++.|+++++.
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~-~~~~drv~~l~~-G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV-PLYCDNVFVMKE-GRVILQGNPKEVF 232 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG-GGGCSEEEEEET-TEEEEEECHHHHT
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH-HHhCCEEEEEEC-CEEEEECCHHHHh
Confidence 99999999999999999999999999999999997 5699999999999864 578999999986 5889999999874
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.2e-45 Score=395.45 Aligned_cols=212 Identities=23% Similarity=0.333 Sum_probs=184.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc------cc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH------SY 574 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~------~~ 574 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|+++... .+
T Consensus 4 ~l~~~~l~~~y~--~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~ 79 (224)
T 2pcj_A 4 ILRAENIKKVIR--GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNEKELSLL 79 (224)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCHHHHHHH
T ss_pred EEEEEeEEEEEC--CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHHH
Confidence 388999999994 4689999999999999999999999999999999999875 6899999999886321 12
Q ss_pred c-ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 001270 575 K-KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 575 r-~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaI 653 (1111)
+ +.||||||++.+++.+||+||+.++.... .....+..++++++++.+||.+..++++++ |||||||||+|
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~l 151 (224)
T 2pcj_A 80 RNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPYE-----LSGGEQQRVAI 151 (224)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGG-----SCHHHHHHHHH
T ss_pred HhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHH
Confidence 2 67999999999999999999999876432 122333445688999999999888888765 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecC
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGS 727 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~ 727 (1111)
||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++. + +.+|++++|.+ |++++.|+
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~v~~l~~-G~i~~~g~ 222 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-ELTHRTLEMKD-GKVVGEIT 222 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TTSSEEEEEET-TEEEEEEE
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEEEee
Confidence 999999999999999999999999999999999998779999999999864 4 78999999987 57888875
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-45 Score=402.19 Aligned_cols=219 Identities=28% Similarity=0.439 Sum_probs=191.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--ccccccE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI--HSYKKII 578 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~--~~~r~~I 578 (1111)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|+++.. ..+++.|
T Consensus 15 ~l~i~~l~~~y--~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 15 AVVVKDLRKRI--GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTE
T ss_pred eEEEEEEEEEE--CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHHHHhhcE
Confidence 47899999999 45689999999999999999999999999999999999865 689999999988642 2356789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
|||||++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+++ |||||||||+|||||+
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVST-----YSKGMVRKLLIARALM 162 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGGG-----CCHHHHHHHHHHHHHT
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChhh-----CCHHHHHHHHHHHHHH
Confidence 99999999999999999999875432 122333345688999999999988888765 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++. +..++|++++|.+ |++++.|+++++.+
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLE-VEFLCDRIALIHN-GTIVETGTVEELKE 235 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHH-HTTTCSEEEEEET-TEEEEEEEHHHHHH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-HHHHCCEEEEEEC-CEEEEecCHHHHHH
Confidence 9999999999999999999999999999998789999999999875 4567999999987 57889999988754
No 10
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.3e-45 Score=419.46 Aligned_cols=218 Identities=27% Similarity=0.383 Sum_probs=192.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-------cc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-------HS 573 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~ 573 (1111)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++.. ..
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~ 78 (372)
T 1g29_1 3 GVRLVDVWKVF--GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPP 78 (372)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCG
T ss_pred EEEEEeEEEEE--CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCH
Confidence 48899999999 45689999999999999999999999999999999999875 689999999987532 23
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaI 653 (1111)
.++.||||||++.+++++||+||+.|+...+ ...+.+..++++++++.+||.+..++++.+ |||||||||+|
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSGGq~QRval 150 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRE-----LSGGQRQRVAL 150 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGG-----SCHHHHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCccc-----CCHHHHHHHHH
Confidence 4578999999999999999999999987543 233445556789999999999998988876 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||||+.+|+||||||||+|||+.++..+++.|+++.++ |.|||+||||+++ +..++|++++|.+ |+++..|+++++.
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~vl~~-G~i~~~g~~~~l~ 228 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE-AMTMGDRIAVMNR-GVLQQVGSPDEVY 228 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH-HHHhCCEEEEEeC-CEEEEeCCHHHHH
Confidence 99999999999999999999999999999999998765 9999999999875 4689999999986 5889999998874
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.1e-45 Score=418.99 Aligned_cols=217 Identities=26% Similarity=0.366 Sum_probs=191.7
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGF 580 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 580 (1111)
|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++.. ...++.|||
T Consensus 4 l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 4 IRVVNLKKYF--GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp EEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEEEEE--CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEEE
Confidence 7899999999 45689999999999999999999999999999999999875 689999999998642 234678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
|||++.+++++||+||+.|+...+ ...+.+..++++++++.+||.+..++++++ |||||||||+|||||+.+
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSgGq~QRvalArAL~~~ 151 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPTQ-----LSGGQQQRVALARALVKQ 151 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTC
T ss_pred EecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHcC
Confidence 999999999999999999976432 233344446789999999999999988876 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|++|||||||+|||+.++..+++.|+++.++ |.|||+||||+++ +..++|++++|.+ |+++..|+++++.
T Consensus 152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-~~~~adri~vl~~-G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 152 PKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE-AMTMASRIAVFNQ-GKLVQYGTPDEVY 222 (359)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 9999999999999999999999999998754 9999999999875 4589999999987 5889999998874
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.4e-45 Score=417.87 Aligned_cols=220 Identities=26% Similarity=0.407 Sum_probs=193.7
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccE
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKII 578 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~I 578 (1111)
..|+++||+++|+ +++.+|+||||+|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++.. ...++.|
T Consensus 13 ~~l~~~~l~~~y~-g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 13 MTIEFVGVEKIYP-GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp EEEEEEEEEECCT-TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSSE
T ss_pred ceEEEEEEEEEEc-CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChhhCcE
Confidence 3589999999993 23569999999999999999999999999999999999875 689999999998642 3356789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV 658 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl 658 (1111)
|||||++.+++++||+||+.|+...+ ...+.+..++++++++.+||.+..++++.+ |||||||||+|||||+
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~-----LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHE-----LSGGQQQRVALARALA 161 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCccc-----CCHHHHHHHHHHHHHH
Confidence 99999999999999999999987543 233444556789999999999999988876 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
.+|+||||||||+|||+.++..+++.|+++.++ |.|||+||||+++ +..++|++++|.+ |+++..|+++++.
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~vl~~-G~i~~~g~~~~l~ 234 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEE-ALEVADRVLVLHE-GNVEQFGTPEEVY 234 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 999999999999999999999999999999765 9999999999875 4589999999986 5889999998874
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.4e-45 Score=418.92 Aligned_cols=217 Identities=27% Similarity=0.400 Sum_probs=192.3
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGF 580 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 580 (1111)
|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++.. ...++.|||
T Consensus 4 l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (362)
T 2it1_A 4 IKLENIVKKF--GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGL 79 (362)
T ss_dssp EEEEEEEEES--SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEeEEEEE--CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEEE
Confidence 7899999999 45679999999999999999999999999999999999875 689999999998642 234578999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
|||++.+++++||+||+.|+...+ ...+.+..++++++++.+||.+..++++.+ |||||||||+|||||+.+
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~ 151 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQ-----LSGGQQQRVAIARALVKE 151 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGG-----SCHHHHHHHHHHHHHTTC
T ss_pred EecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChhh-----CCHHHHHHHHHHHHHHcC
Confidence 999999999999999999986543 233445556789999999999998888876 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+||||||||||||+.++..+++.|+++.++ |.|||+||||+++ +..++|++++|.+ |+++..|+++++.
T Consensus 152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~vl~~-G~i~~~g~~~~~~ 222 (362)
T 2it1_A 152 PEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE-ALAMADRIAVIRE-GEILQVGTPDEVY 222 (362)
T ss_dssp CSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 9999999999999999999999999999754 9999999999875 4589999999986 5889999998874
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.1e-45 Score=403.47 Aligned_cols=219 Identities=21% Similarity=0.346 Sum_probs=188.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc----cccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH----SYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~----~~r~ 576 (1111)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|++. |++|+|.++|+++... ..++
T Consensus 7 ~l~i~~l~~~y--~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~ 82 (257)
T 1g6h_A 7 ILRTENIVKYF--GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHY 82 (257)
T ss_dssp EEEEEEEEEEE--TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEeeeEEEE--CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhC
Confidence 48999999999 45679999999999999999999999999999999999875 6899999999986421 2356
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHh-hccc---------cchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARC-RLSA---------HLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGG 646 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~-~~~~---------~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGG 646 (1111)
.||||||++.+++.+||+||+.++... .... .....+..++++++++.+||.+..++.+++ ||||
T Consensus 83 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG 157 (257)
T 1g6h_A 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGG 157 (257)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHH
T ss_pred CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchh-----CCHH
Confidence 799999999999999999999986532 1000 011223345688999999999888888876 9999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEec
Q 001270 647 QRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHG 726 (1111)
Q Consensus 647 QrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G 726 (1111)
|||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||++. +.+++|++++|.+ |++++.|
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~-G~i~~~g 235 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFN-GQIIAEG 235 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGGGCSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEEe
Confidence 9999999999999999999999999999999999999999998789999999999985 4578999999987 5788999
Q ss_pred CHhh
Q 001270 727 SVKK 730 (1111)
Q Consensus 727 ~~~~ 730 (1111)
++++
T Consensus 236 ~~~~ 239 (257)
T 1g6h_A 236 RGEE 239 (257)
T ss_dssp ESHH
T ss_pred CHHH
Confidence 9887
No 15
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.6e-45 Score=402.84 Aligned_cols=216 Identities=25% Similarity=0.344 Sum_probs=189.2
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 576 (1111)
..|+++||++.| +++.+|+||||+|++||++||+||||||||||+|+|+|+.. +++|+|.++|+++.. ..+++
T Consensus 10 ~~l~~~~l~~~~--~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~ 85 (266)
T 4g1u_C 10 ALLEASHLHYHV--QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNSWQPKALAR 85 (266)
T ss_dssp CEEEEEEEEEEE--TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTTSCHHHHHH
T ss_pred ceEEEEeEEEEe--CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCCHHHHhh
Confidence 358999999999 45789999999999999999999999999999999999875 589999999998642 24567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
.+|||+|++.+++.+||+||+.++..... ..+..++++++++.+||.+..++.+++ |||||||||+||||
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~QRv~iAra 155 (266)
T 4g1u_C 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDYRV-----LSGGEQQRVQLARV 155 (266)
T ss_dssp HEEEECSCCCCCSCCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBGGG-----CCHHHHHHHHHHHH
T ss_pred eEEEEecCCccCCCCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCccc-----CCHHHHHHHHHHHH
Confidence 79999999998888999999998764321 112234678999999999988888765 99999999999999
Q ss_pred Hhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 657 MVM------EPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 657 Ll~------~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
|+. +|+||||||||+|||+.++..+++.|++++++ |+|||+||||++. +.+++|++++|.+ |++++.|+++
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~-~~~~~d~v~vl~~-G~i~~~g~~~ 233 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNL-AALYADRIMLLAQ-GKLVACGTPE 233 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHH-HHHHCSEEEEEET-TEEEEEECHH
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHH-HHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999 99999999999999999999999999999765 5799999999975 4578999999986 5889999998
Q ss_pred hH
Q 001270 730 KV 731 (1111)
Q Consensus 730 ~l 731 (1111)
++
T Consensus 234 ~~ 235 (266)
T 4g1u_C 234 EV 235 (266)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.3e-45 Score=394.95 Aligned_cols=217 Identities=27% Similarity=0.394 Sum_probs=186.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc---c-ccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH---S-YKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~---~-~r~ 576 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|+++... . .++
T Consensus 6 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 6 VLEVQSLHVYYG--AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHT
T ss_pred eEEEEeEEEEEC--CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCHHHHHhC
Confidence 489999999994 4679999999999999999999999999999999999765 6899999999986421 1 245
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcC-CCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLG-LQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LG-L~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
.||||||++.+++.+||+||+.++.... ....+..+.++++++.++ |.+..++.+++ |||||||||+|||
T Consensus 82 ~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~-----LSgGq~qrv~lAr 152 (240)
T 1ji0_A 82 GIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGR 152 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSSS-----SCHHHHHHHHHHH
T ss_pred CEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChhh-----CCHHHHHHHHHHH
Confidence 6999999999999999999999864211 111223346788999994 98888877765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++. +.+++|++++|.+ |++++.|+++++.
T Consensus 153 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG-ALKVAHYGYVLET-GQIVLEGKASELL 227 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH-HHHHCSEEEEEET-TEEEEEEEHHHHH
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHh
Confidence 9999999999999999999999999999999998789999999999865 4588999999986 5788999988763
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.1e-45 Score=418.54 Aligned_cols=217 Identities=30% Similarity=0.429 Sum_probs=191.7
Q ss_pred EEEEeEEEEEcCCcce--eEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC------ccc
Q 001270 502 VSFKDLTLTLKGKNKH--LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP------IHS 573 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~--IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~------~~~ 573 (1111)
|+++||+++|+ ++. +|+||||+|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++. ...
T Consensus 4 l~i~~l~~~y~--~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 4 IIVKNVSKVFK--KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp EEEEEEEEEEG--GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEeEEEEEC--CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCCh
Confidence 78999999994 456 9999999999999999999999999999999999875 68999999998753 233
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 001270 574 YKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 574 ~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaI 653 (1111)
.++.||||||++.+++++||+||+.|+...+ ...+.+..++++++++.+||.+..++++++ |||||||||+|
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~-----LSGGq~QRval 151 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPRE-----LSGAQQQRVAL 151 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHH
Confidence 5678999999999999999999999976532 233444556789999999999998988876 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||+||||+++ +..++|++++|.+ |+++..|+++++.
T Consensus 152 AraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-~~~~adri~vl~~-G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVK-GKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999754 9999999999975 4689999999986 5889999998874
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.8e-45 Score=418.70 Aligned_cols=218 Identities=27% Similarity=0.387 Sum_probs=186.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIG 579 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Ig 579 (1111)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++.. ...++.||
T Consensus 11 ~l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRF--GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNIS 86 (372)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEE
T ss_pred eEEEEEEEEEE--CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhhCcEE
Confidence 38899999999 45679999999999999999999999999999999999875 689999999998642 23457899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
||||++.+|+++||+||+.|+...+ ...+.+..++++++++.+||.+..++++++ |||||||||+|||||+.
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVV 158 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTT-----CCSSCHHHHHHHHHHTT
T ss_pred EEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhc
Confidence 9999999999999999999975432 233445556789999999999998888765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+|+||||||||||||+.++..+++.|+++.++ |.|||+||||+++ +..++|++++|.+ |+++..|+++++.
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~vl~~-G~i~~~g~~~~l~ 230 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE-AMTMGDRIAVMNR-GQLLQIGSPTEVY 230 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 99999999999999999999999999999765 9999999999875 4589999999986 5889999998874
No 19
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-44 Score=396.61 Aligned_cols=219 Identities=26% Similarity=0.394 Sum_probs=187.0
Q ss_pred EEEEeEEEEEcCCc---ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccE
Q 001270 502 VSFKDLTLTLKGKN---KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~---k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 578 (1111)
|+++||+++|+.+. +.+|+||||+|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++....+++.|
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~i 80 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRNI 80 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGGE
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhhE
Confidence 78999999995223 579999999999999999999999999999999999875 6899999999886432456789
Q ss_pred EEEccCC-CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC--ccccccccCccCCCCCHHHHHHHHHHH
Q 001270 579 GFVPQDD-IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ--TVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 579 gyV~Qd~-~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~--~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
|||+|++ .+++.+||+||+.++.... ....+..++++++++.+||. +..++.+++ |||||||||+|||
T Consensus 81 ~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~-----LSgGq~qRv~lAr 151 (266)
T 2yz2_A 81 GIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFF-----LSGGEKRRVAIAS 151 (266)
T ss_dssp EEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGG-----SCHHHHHHHHHHH
T ss_pred EEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChhh-----CCHHHHHHHHHHH
Confidence 9999995 4566799999999865321 11111224578899999999 888888765 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++. +..++|++++|.+ |++++.|+++++.+
T Consensus 152 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 152 VIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEK-GKKVFDGTRMEFLE 227 (266)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSEEEEEET-TEEEEEEEHHHHHH
T ss_pred HHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998779999999999985 4468999999986 57889999888753
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1e-44 Score=411.87 Aligned_cols=213 Identities=27% Similarity=0.389 Sum_probs=188.0
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGF 580 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 580 (1111)
|+++||+++|+ ++ +|+||||+|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++.. ...++.|||
T Consensus 2 l~~~~l~~~y~--~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWK--NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAF 76 (348)
T ss_dssp EEEEEEEEECS--SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEE
T ss_pred EEEEEEEEEEC--CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEE
Confidence 68899999993 45 9999999999999999999999999999999999875 689999999998642 234678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
|||++.+++++||+||+.|+...+. ..+. ++++++++.+||.+..++++++ |||||||||+|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~~~-----LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNPLT-----LSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCGGG-----SCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999865431 1121 4688999999999999988876 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|++|||||||+|||+.++..+++.|+++.+ .|+|||++|||+++ +..++|++++|++ |+++..|+++++.
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~-~~~~adri~vl~~-G~i~~~g~~~~~~ 216 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE-ARIMADRIAVVMD-GKLIQVGKPEEIF 216 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHH-HHHHCSEEEEESS-SCEEEEECHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHHH
Confidence 999999999999999999999999999975 49999999999875 4589999999976 5789999998873
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.2e-44 Score=388.63 Aligned_cols=212 Identities=28% Similarity=0.404 Sum_probs=184.2
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGF 580 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~Igy 580 (1111)
|+++||+++|+ . +|+||||+|++ |+++|+||||||||||||+|+|+.. |++|+|.++|+++.. ...++.|||
T Consensus 2 l~~~~l~~~y~--~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLG--N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGF 74 (240)
T ss_dssp CEEEEEEEEET--T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBC
T ss_pred EEEEEEEEEeC--C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEE
Confidence 57899999994 2 59999999999 9999999999999999999999875 689999999988642 234678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
|||++.+++.+||+||+.++.... .... ..++++++++.+||.+..++++++ |||||||||+|||||+.+
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNV---ERVE--RDRRVREMAEKLGIAHLLDRKPAR-----LSGGERQRVALARALVIQ 144 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTS---CHHH--HHHHHHHHHHTTTCTTTTTCCGGG-----SCHHHHHHHHHHHHHTTC
T ss_pred EcCCCccCCCCcHHHHHHHHHHHc---CCch--HHHHHHHHHHHcCCHHHhcCChhh-----CCHHHHHHHHHHHHHHcC
Confidence 999999999999999999864321 1111 245688999999999888888766 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|++|||||||+|||+.++..+++.|++++++ |+|||++|||++. +.+++|++++|.+ |++++.|+++++.
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~d~i~~l~~-G~i~~~g~~~~~~ 215 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE-AAMLADEVAVMLN-GRIVEKGKLKELF 215 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHH-HHHHCSEEEEEET-TEEEEEECHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEECCHHHHH
Confidence 9999999999999999999999999999754 9999999999875 4578999999987 5788999988764
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=5.6e-44 Score=388.43 Aligned_cols=222 Identities=23% Similarity=0.338 Sum_probs=178.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc---c-ccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH---S-YKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~---~-~r~ 576 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||+|+|+|+....+++|+|.++|+++... . .++
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASID--GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEEC--CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 378999999994 4689999999999999999999999999999999999722236899999999986321 1 234
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCC-CccccccccCccCCCCCHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGL-QTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL-~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
.++||+|++.+++.+||+||+.++............+..++++++++.+|| .+..++.+++ +|||||||||+|||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~----~LSgGqkQrv~iAr 156 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNE----GFSGGEKKRNEILQ 156 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTC----C----HHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCccc----CCCHHHHHHHHHHH
Confidence 699999999999999999999986532111111122334567899999999 4777776642 39999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCeEEEEeCCcEEEEecCHhh
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRM-FDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~-~D~vilL~~GG~iv~~G~~~~ 730 (1111)
||+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||++.. ... +|++++|.+ |++++.|+++.
T Consensus 157 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~-~~~~~d~v~~l~~-G~i~~~g~~~~ 230 (250)
T 2d2e_A 157 LLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL-NYIQPDKVHVMMD-GRVVATGGPEL 230 (250)
T ss_dssp HHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG-GTSCCSEEEEEET-TEEEEEESHHH
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HHhcCCEEEEEEC-CEEEEEeCHHH
Confidence 99999999999999999999999999999999876799999999999753 355 599999987 57889999873
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.1e-44 Score=396.84 Aligned_cols=220 Identities=22% Similarity=0.330 Sum_probs=184.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC-----ccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP-----IHSYK 575 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~-----~~~~r 575 (1111)
.|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||||+|+|++. +++|+|.++|+++. ...++
T Consensus 21 ~l~~~~l~~~y~--~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 21 LIQLDQIGRMKQ--GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---CCHHHHH
T ss_pred eEEEEeEEEEEC--CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEcccccCCHHHHc
Confidence 589999999994 4689999999999999999999999999999999999875 68999999998754 12356
Q ss_pred ccEEEEccCCCCC--CCCCHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 001270 576 KIIGFVPQDDIVH--GNLTVEENLWFHARCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVH 652 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~--~~LTV~EnL~f~a~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVa 652 (1111)
+.||||+|++.++ +.+||+||+.++...... ......+..++++++++.+||.+..++.+++ |||||||||+
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGqkqRv~ 171 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGY-----LSTGEKQRVM 171 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHH
Confidence 7899999997543 357999999885321100 0011123345688999999999888888876 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNI--CLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TV--IivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
|||||+.+|+||||||||+|||+.++..+++.|++++++|+|| |++|||++. +.+++|++++|.+ |++++.|++++
T Consensus 172 lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~~ 249 (279)
T 2ihy_A 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE-ITANFSKILLLKD-GQSIQQGAVED 249 (279)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGG-CCTTCCEEEEEET-TEEEEEEEHHH
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEECCHHH
Confidence 9999999999999999999999999999999999997669999 999999875 4578999999986 57889999877
Q ss_pred H
Q 001270 731 V 731 (1111)
Q Consensus 731 l 731 (1111)
+
T Consensus 250 ~ 250 (279)
T 2ihy_A 250 I 250 (279)
T ss_dssp H
T ss_pred H
Confidence 5
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7e-44 Score=387.27 Aligned_cols=217 Identities=23% Similarity=0.441 Sum_probs=179.5
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 576 (1111)
.+|+++||+++|+++++.+|+||||+|++||+++|+|||||||||||++|+|++. +++|+|.++|+++.. ..+++
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~~~~~~~ 83 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLRR 83 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHH
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHh
Confidence 4689999999994334679999999999999999999999999999999999875 689999999998642 23567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcccccccc------CccCCCCCHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVG------TVEKRGISGGQRKR 650 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg------~~~~rgLSGGQrQR 650 (1111)
.||||||++.+++ .||+||+.++.. .... +.++++++.+|+.+..++.+. ...+..||||||||
T Consensus 84 ~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qR 153 (247)
T 2ff7_A 84 QVGVVLQDNVLLN-RSIIDNISLANP-----GMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQR 153 (247)
T ss_dssp HEEEECSSCCCTT-SBHHHHHTTTCT-----TCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHH
T ss_pred cEEEEeCCCcccc-ccHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHH
Confidence 8999999998886 699999988531 1111 235667777777665544321 11245699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
|+|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||++||+++.. +.+|++++|.+ |++++.|++++
T Consensus 154 v~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~--~~~d~v~~l~~-G~i~~~g~~~~ 229 (247)
T 2ff7_A 154 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTV--KNADRIIVMEK-GKIVEQGKHKE 229 (247)
T ss_dssp HHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGG--TTSSEEEEEET-TEEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHH--HhCCEEEEEEC-CEEEEECCHHH
Confidence 999999999999999999999999999999999999985 699999999999753 56999999987 57889999887
Q ss_pred HH
Q 001270 731 VE 732 (1111)
Q Consensus 731 l~ 732 (1111)
+.
T Consensus 230 l~ 231 (247)
T 2ff7_A 230 LL 231 (247)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.3e-44 Score=393.29 Aligned_cols=221 Identities=24% Similarity=0.364 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEcC-CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccc
Q 001270 501 EVSFKDLTLTLKG-KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~-~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 576 (1111)
.|+++||+++|++ +.+.+|+||||+|++||+++|+||||||||||||+|+|++. |++|+|.++|+++.. ..+++
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHHHHHH
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCCHHHHhc
Confidence 4889999999953 12679999999999999999999999999999999999875 689999999988632 23567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLS-AHLAKADKVLVIERVIDTL--GLQTVRDSLVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~-~~~~~~~~~~~v~~vL~~L--GL~~~~d~~vg~~~~rgLSGGQrQRVaI 653 (1111)
.||||||++.+++ .||+|||.++...... ...........++++++.+ ||.+..++.+.+ |||||||||+|
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~-----LSgGq~QRv~l 167 (271)
T 2ixe_A 94 QVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ-----LSGGQRQAVAL 167 (271)
T ss_dssp HEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTT-----SCHHHHHHHHH
T ss_pred cEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCC-----CCHHHHHHHHH
Confidence 8999999998887 5999999986432111 1111112223456778888 787777777655 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||||+.+|+||||||||+|||+.++..+++.|+++.+ +|+|||+|||+++. + ..+|++++|.+ |++++.|+++++.
T Consensus 168 AraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~v~~l~~-G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 168 ARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHHILFLKE-GSVCEQGTHLQLM 244 (271)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSEEEEEET-TEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEECCHHHHH
Confidence 9999999999999999999999999999999999864 48999999999874 3 46999999987 5788999998875
No 26
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=7.1e-44 Score=398.65 Aligned_cols=215 Identities=26% Similarity=0.424 Sum_probs=177.2
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 577 (1111)
.|+++||+|+|++ .+.+|+||||+|++||++||+||||||||||+++|+|++. +.+|+|.++|+++.. ..+|+.
T Consensus 53 ~i~~~~vs~~y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i~~~~~~~~r~~ 129 (306)
T 3nh6_A 53 RIEFENVHFSYAD-GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDISQVTQASLRSH 129 (306)
T ss_dssp CEEEEEEEEESST-TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEETTSBCHHHHHHT
T ss_pred eEEEEEEEEEcCC-CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEcccCCHHHHhcc
Confidence 5899999999963 4679999999999999999999999999999999999775 689999999998642 356788
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV-------RDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-------~d~~vg~~~~rgLSGGQrQR 650 (1111)
||||||++.+|+ .||+|||.|+..... . ..++++++.+++.+. .++.+++ .+..||||||||
T Consensus 130 i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~-----~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQR 198 (306)
T 3nh6_A 130 IGVVPQDTVLFN-DTIADNIRYGRVTAG-----N----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQR 198 (306)
T ss_dssp EEEECSSCCCCS-EEHHHHHHTTSTTCC-----H----HHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHH
T ss_pred eEEEecCCccCc-ccHHHHHHhhcccCC-----H----HHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHH
Confidence 999999999885 699999998753211 1 113334444444332 2333443 345699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
|+|||||+.+|+|||||||||+||+.++..|++.|+++. +++|||+|||+++. + ..+|++++|.+ |++++.|++++
T Consensus 199 vaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~-~-~~aD~i~vl~~-G~iv~~G~~~e 274 (306)
T 3nh6_A 199 VAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLST-V-VNADQILVIKD-GCIVERGRHEA 274 (306)
T ss_dssp HHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHH-H-HTCSEEEEEET-TEEEEEECHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHH-H-HcCCEEEEEEC-CEEEEECCHHH
Confidence 999999999999999999999999999999999999986 47899999999975 3 45999999987 58999999998
Q ss_pred HHH
Q 001270 731 VEE 733 (1111)
Q Consensus 731 l~~ 733 (1111)
+.+
T Consensus 275 l~~ 277 (306)
T 3nh6_A 275 LLS 277 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 27
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.1e-43 Score=386.37 Aligned_cols=225 Identities=26% Similarity=0.325 Sum_probs=185.5
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccc-cc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSY-KK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~-r~ 576 (1111)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|+....+++|+|.++|+++.. ... ++
T Consensus 20 ~l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSV--EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEE--CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 38899999999 4568999999999999999999999999999999999974334689999999987532 112 34
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHH-hh--cc-ccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHAR-CR--LS-AHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~-~~--~~-~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
.||||+|++.+++.+||.||+.+... .. .. ......+..++++++++.+||. +..++.+++ .|||||||||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~----~LSgGq~QRv 173 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRN 173 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTT----TCCHHHHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCccc----CCCHHHHHHH
Confidence 59999999999999999999987542 11 00 1122333345688999999996 566776641 3999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCeEEEEeCCcEEEEecCHhh
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRM-FDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~-~D~vilL~~GG~iv~~G~~~~ 730 (1111)
+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||++.. ... +|++++|.+ |++++.|++++
T Consensus 174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~-~~~~~d~v~~l~~-G~i~~~g~~~~ 251 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRIL-DYIKPDYVHVLYQ-GRIVKSGDFTL 251 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGG-GTSCCSEEEEEET-TEEEEEECTTH
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHH-HhhcCCEEEEEEC-CEEEEEcCHHH
Confidence 999999999999999999999999999999999999876799999999998753 344 899999987 57899999887
Q ss_pred HHH
Q 001270 731 VEE 733 (1111)
Q Consensus 731 l~~ 733 (1111)
+..
T Consensus 252 ~~~ 254 (267)
T 2zu0_C 252 VKQ 254 (267)
T ss_dssp HHH
T ss_pred Hhh
Confidence 753
No 28
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=6.5e-43 Score=381.08 Aligned_cols=210 Identities=27% Similarity=0.381 Sum_probs=180.0
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||+++|+. ++.+|+||||+|++||+++|+||||||||||||+|+|++. |++|+|. +++.|||
T Consensus 4 ~l~i~~l~~~y~~-~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~----------~~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENLGFYYQA-ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE----------VYQSIGF 70 (253)
T ss_dssp EEEEEEEEEEETT-TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE----------ECSCEEE
T ss_pred eEEEeeEEEEeCC-CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE----------EeccEEE
Confidence 4889999999941 4679999999999999999999999999999999999875 6899998 3467999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSA-HLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~-~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|||++.+++.+||+||+.++....... ........++++++++.+||.+..++.+++ |||||||||+|||||+.
T Consensus 71 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~~ 145 (253)
T 2nq2_C 71 VPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLILIARAIAS 145 (253)
T ss_dssp ECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHT
T ss_pred EcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhh-----CCHHHHHHHHHHHHHHc
Confidence 999999998999999999874321100 001122345688999999999888887765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+|+||||||||+|||+.++..+++.|++++++ |+|||++|||++. +.+++|++++|.+| + ++.|+++++
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~G-~-~~~g~~~~~ 215 (253)
T 2nq2_C 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ-N-FKFGETRNI 215 (253)
T ss_dssp TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH-HHHHCSEEEEEETT-E-EEEEEHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEeCC-e-EecCCHHHH
Confidence 99999999999999999999999999999876 9999999999875 45789999999875 6 889988776
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.9e-43 Score=380.16 Aligned_cols=207 Identities=25% Similarity=0.352 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||+++ .+|+||||+|++||+++|+||||||||||||+|+|++. ++ |+|.++|+++. ...+++.
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~ 74 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALH 74 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHH
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhce
Confidence 4789999875 58999999999999999999999999999999999875 57 99999998753 2345678
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
||||+|++.+++.+||+||+.++.... .. .++++++++.+||.+..++.+++ |||||||||+|||||
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~----~~----~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL 141 (249)
T 2qi9_C 75 RAYLSQQQTPPFATPVWHYLTLHQHDK----TR----TELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVV 141 (249)
T ss_dssp EEEECSCCCCCTTCBHHHHHHTTCSST----TC----HHHHHHHHHHTTCGGGTTSBGGG-----CCHHHHHHHHHHHHH
T ss_pred EEEECCCCccCCCCcHHHHHHHhhccC----Cc----HHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHH
Confidence 999999999999999999998753111 11 34578899999999888887765 999999999999999
Q ss_pred hhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 658 VMEPS-------LLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 658 l~~P~-------lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
+.+|+ +|||||||+|||+.++..+++.|++++++|+|||++|||++. +.+++|++++|.+ |++++.|++++
T Consensus 142 ~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~~ 219 (249)
T 2qi9_C 142 LQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNH-TLRHAHRAWLLKG-GKMLASGRREE 219 (249)
T ss_dssp HHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEET-TEEEEEEEHHH
T ss_pred HcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHHH
Confidence 99999 999999999999999999999999998779999999999875 4578999999986 57889999877
Q ss_pred H
Q 001270 731 V 731 (1111)
Q Consensus 731 l 731 (1111)
+
T Consensus 220 ~ 220 (249)
T 2qi9_C 220 V 220 (249)
T ss_dssp H
T ss_pred H
Confidence 6
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5e-43 Score=379.26 Aligned_cols=215 Identities=27% Similarity=0.408 Sum_probs=180.3
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccccE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~I 578 (1111)
|+++||+++|+ +++.+|+||||+|++||+++|+|||||||||||++|+|++. +++|+|.++|+++. ...+++.|
T Consensus 2 l~~~~l~~~y~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i 78 (243)
T 1mv5_A 2 LSARHVDFAYD-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQI 78 (243)
T ss_dssp EEEEEEEECSS-SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTC
T ss_pred EEEEEEEEEeC-CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhhE
Confidence 68899999994 34579999999999999999999999999999999999875 58999999998863 23467789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcccccccc------CccCCCCCHHHHHHHH
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVG------TVEKRGISGGQRKRVH 652 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg------~~~~rgLSGGQrQRVa 652 (1111)
|||||++.+++ .||+||+.++... .... +.++++++.+|+.+..++.+. ...+..|||||||||+
T Consensus 79 ~~v~q~~~l~~-~tv~enl~~~~~~----~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~ 149 (243)
T 1mv5_A 79 GFVSQDSAIMA-GTIRENLTYGLEG----DYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149 (243)
T ss_dssp CEECCSSCCCC-EEHHHHTTSCTTS----CSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH
T ss_pred EEEcCCCcccc-ccHHHHHhhhccC----CCCH----HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHH
Confidence 99999998887 5999999875311 1111 236778888998877655431 1134579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 653 VGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||++||+++. + ..+|++++|.+ |++++.|+++++.
T Consensus 150 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLST-I-VDADKIYFIEK-GQITGSGKHNELV 225 (243)
T ss_dssp HHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHH-H-HHCSEEEEEET-TEECCCSCHHHHH
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHH-H-HhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999987 69999999999874 3 56999999987 5788999988764
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-43 Score=373.03 Aligned_cols=197 Identities=21% Similarity=0.325 Sum_probs=170.4
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||+++|+ + .+|+||||+|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++. ..++.|||
T Consensus 10 ~l~~~~ls~~y~--~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~--~~~~~i~~ 82 (214)
T 1sgw_A 10 KLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT--KVKGKIFF 82 (214)
T ss_dssp EEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG--GGGGGEEE
T ss_pred eEEEEEEEEEeC--C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh--hhcCcEEE
Confidence 589999999993 4 79999999999999999999999999999999999765 68999999998864 35788999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
|||++.+++.+||+||+.++..... ... + .++++++++.+||.+. ++.+.+ |||||||||+|||||+.+
T Consensus 83 v~q~~~~~~~~tv~enl~~~~~~~~---~~~-~-~~~~~~~l~~~gl~~~-~~~~~~-----LSgGqkqrv~laraL~~~ 151 (214)
T 1sgw_A 83 LPEEIIVPRKISVEDYLKAVASLYG---VKV-N-KNEIMDALESVEVLDL-KKKLGE-----LSQGTIRRVQLASTLLVN 151 (214)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTT---CCC-C-HHHHHHHHHHTTCCCT-TSBGGG-----SCHHHHHHHHHHHHTTSC
T ss_pred EeCCCcCCCCCCHHHHHHHHHHhcC---Cch-H-HHHHHHHHHHcCCCcC-CCChhh-----CCHHHHHHHHHHHHHHhC
Confidence 9999999999999999998754321 111 1 2457889999999887 777655 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEE
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLL 716 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL 716 (1111)
|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +...+|+++++
T Consensus 152 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~ 206 (214)
T 1sgw_A 152 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKY 206 (214)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGG
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEe
Confidence 99999999999999999999999999997678999999999985 34566665544
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=8.3e-42 Score=373.62 Aligned_cols=214 Identities=27% Similarity=0.425 Sum_probs=175.5
Q ss_pred EEEEEeEEEEEcCCc-ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccc
Q 001270 501 EVSFKDLTLTLKGKN-KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~-k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~ 576 (1111)
.|+++||+++|++.. +.+|+||||+|++||+++|+|||||||||||++|+|++. + +|+|.++|+++.. ..+++
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~~~~~ 93 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRNSIRS 93 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHHHHHT
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHHHHhc
Confidence 488999999995432 469999999999999999999999999999999999864 4 7999999988632 24567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccc-------cccccCccCCCCCHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVR-------DSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~-------d~~vg~~~~rgLSGGQrQ 649 (1111)
.||||||++.+++ .||+|||.++.. .... +.+.++++.+++.+.. ++.++. .+..|||||||
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgGqkq 162 (260)
T 2ghi_A 94 IIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGGERQ 162 (260)
T ss_dssp TEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHHHHH
T ss_pred cEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHHHHH
Confidence 8999999998885 699999988531 1111 2345666767765432 222332 34569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
||+|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||++||+++.. +.+|++++|.+ |++++.|+++
T Consensus 163 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~~--~~~d~i~~l~~-G~i~~~g~~~ 238 (260)
T 2ghi_A 163 RIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLSTI--SSAESIILLNK-GKIVEKGTHK 238 (260)
T ss_dssp HHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGS--TTCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHH--HhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999999985 489999999999753 56999999986 5789999998
Q ss_pred hHH
Q 001270 730 KVE 732 (1111)
Q Consensus 730 ~l~ 732 (1111)
++.
T Consensus 239 ~l~ 241 (260)
T 2ghi_A 239 DLL 241 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.4e-41 Score=372.76 Aligned_cols=208 Identities=23% Similarity=0.323 Sum_probs=177.9
Q ss_pred EEEEeEEEEEcCC--cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 502 VSFKDLTLTLKGK--NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~--~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
|+++||+++|+++ .+.+|+||||+|+ ||+++|+||||||||||||+|+|+. |++|+|.++|+++.....++.||
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~---p~~G~I~~~g~~~~~~~~~~~i~ 77 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL---PYSGNIFINGMEVRKIRNYIRYS 77 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS---CCEEEEEETTEEGGGCSCCTTEE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC---CCCcEEEECCEECcchHHhhheE
Confidence 6889999999531 1679999999999 9999999999999999999999976 47999999998753212266899
Q ss_pred -EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 580 -FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 580 -yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
||||++.+ .+||+||+.++.... ... .++++++++.+||. +..++.+++ |||||||||+|||||
T Consensus 78 ~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~~-----LSgGqkqRv~lAraL 143 (263)
T 2pjz_A 78 TNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKLYK-----LSAGQSVLVRTSLAL 143 (263)
T ss_dssp ECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBGGG-----SCHHHHHHHHHHHHH
T ss_pred EEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCChhh-----CCHHHHHHHHHHHHH
Confidence 99999887 889999999875432 111 23578899999998 888888765 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcC-eEEEEeCCcEEEEecCHhhHH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFD-DLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D-~vilL~~GG~iv~~G~~~~l~ 732 (1111)
+.+|++|||||||+|||+.++..+++.|+++++ |||++|||++. +.+++| ++++|.+ |++++.|+++++.
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~-~~~~~d~~i~~l~~-G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDM-LNLYKEYKAYFLVG-NRLQGPISVSELL 214 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGG-GGGCTTSEEEEEET-TEEEEEEEHHHHH
T ss_pred HhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHH-HHHhcCceEEEEEC-CEEEEecCHHHHH
Confidence 999999999999999999999999999998743 99999999875 347899 9999986 5789999988764
No 34
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-41 Score=409.72 Aligned_cols=223 Identities=25% Similarity=0.414 Sum_probs=178.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||+++|+++.+.+|+||||+|++||++||+||||||||||+++|+|++. +++|+|.+||+++. ...+|++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBGGGBCHHHHHHH
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEcccCCHHHHHhh
Confidence 589999999997666789999999999999999999999999999999999775 68999999998863 3456788
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
||||||++.+++. ||+|||.++..........+..+...+++.++.+ .+-.++.+++ .+..|||||||||+|||||
T Consensus 419 i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l--~~g~~~~~~~-~~~~LSgGqrQrv~lARal 494 (587)
T 3qf4_A 419 ISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISL--PEGYDSRVER-GGRNFSGGQKQRLSIARAL 494 (587)
T ss_dssp EEEECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTS--SSGGGCEECS-SSCSSCHHHHHHHHHHHHH
T ss_pred eEEECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhc--ccchhhHhcC-CCCCcCHHHHHHHHHHHHH
Confidence 9999999999864 9999998864311111111111111122233322 2223444543 3456999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
+++|+|||||||||+||+.++..+.+.|+++. +|+|+|++||+++. .+.+|++++|++ |++++.|+++++.+
T Consensus 495 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~-G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 495 VKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHE-GKVAGFGTHKELLE 566 (587)
T ss_dssp HTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEET-TEEEEEECHHHHHH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 99999999999999999999999999999874 58999999999874 368999999986 58999999998864
No 35
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.7e-41 Score=406.21 Aligned_cols=216 Identities=25% Similarity=0.385 Sum_probs=179.9
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccc
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKK 576 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 576 (1111)
..|+++||+++|+++++.+|+||||+|++||++||+||||||||||+++|+|++. |++|+|.++|+++. ...+|+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHhh
Confidence 3589999999997656689999999999999999999999999999999999765 68999999999863 335678
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-------VRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-------~~d~~vg~~~~rgLSGGQrQ 649 (1111)
+||||+|++.+++. ||+||+.++... ... +.+.+.++..++.+ -.++.+++ .+..|||||||
T Consensus 416 ~i~~v~Q~~~l~~~-tv~eni~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Q 484 (578)
T 4a82_A 416 QIGLVQQDNILFSD-TVKENILLGRPT-----ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQ 484 (578)
T ss_dssp TEEEECSSCCCCSS-BHHHHHGGGCSS-----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHH
T ss_pred heEEEeCCCccCcc-cHHHHHhcCCCC-----CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHH
Confidence 89999999999865 999999886421 111 12344455554433 33455554 44579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
||+|||||+++|++|||||||||||+.++..+.+.|+++. +++|+|++||+++.. +.+|++++|++ |++++.|+++
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~--~~~d~i~~l~~-G~i~~~g~~~ 560 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTI--THADKIVVIEN-GHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGT--TTCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHH--HcCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999999874 579999999999853 67999999986 5899999999
Q ss_pred hHH
Q 001270 730 KVE 732 (1111)
Q Consensus 730 ~l~ 732 (1111)
++.
T Consensus 561 el~ 563 (578)
T 4a82_A 561 ELI 563 (578)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-41 Score=392.42 Aligned_cols=214 Identities=24% Similarity=0.353 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---cccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~ 577 (1111)
.|+++||+++|+.+.+.+|+||||+|++||+++|+||||||||||||+|+|+.. ++|+|.++|+++.. ..+++.
T Consensus 19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp CEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBTTSSCHHHHHHT
T ss_pred eEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEECCcCChHHHhCC
Confidence 589999999996556789999999999999999999999999999999999763 78999999988642 345688
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccC------ccCCCCCHHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGT------VEKRGISGGQRKRV 651 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~------~~~rgLSGGQrQRV 651 (1111)
||||||++.+|+ +||+||+.+... .. .++++++++.+||.+..++++.+ .....|||||||||
T Consensus 96 ig~v~Q~~~lf~-~tv~enl~~~~~------~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRv 164 (390)
T 3gd7_A 96 FGVIPQKVFIFS-GTFRKNLDPNAA------HS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLM 164 (390)
T ss_dssp EEEESCCCCCCS-EEHHHHHCTTCC------SC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHH
T ss_pred EEEEcCCcccCc-cCHHHHhhhccc------cC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHH
Confidence 999999999997 699999964321 11 13467899999998887776643 12234999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
+|||||+.+|+||||||||||||+.++..+++.|+++. .+.|||++|||++. ..++|++++|.+ |+++..|+++++
T Consensus 165 alARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~--~~~aDri~vl~~-G~i~~~g~~~el 240 (390)
T 3gd7_A 165 CLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEA--MLECDQFLVIEE-NKVRQYDSILEL 240 (390)
T ss_dssp HHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGG--GTTCSEEEEEET-TEEEEESSHHHH
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHH--HHhCCEEEEEEC-CEEEEECCHHHH
Confidence 99999999999999999999999999999999998863 58999999999863 367999999986 589999999987
Q ss_pred H
Q 001270 732 E 732 (1111)
Q Consensus 732 ~ 732 (1111)
.
T Consensus 241 ~ 241 (390)
T 3gd7_A 241 Y 241 (390)
T ss_dssp H
T ss_pred H
Confidence 4
No 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.3e-41 Score=360.55 Aligned_cols=204 Identities=25% Similarity=0.377 Sum_probs=165.4
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||+++|+.+++.+|+||||+|++||+++|+||||||||||||+|+|++. |.+|+|.++| .|||
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g----------~i~~ 73 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISF 73 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS----------CEEE
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC----------EEEE
Confidence 588999999996445679999999999999999999999999999999999875 6899999998 3999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccc-------cccCccCCCCCHHHHHHHHH
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDS-------LVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~-------~vg~~~~rgLSGGQrQRVaI 653 (1111)
|+|++.+++. ||+||+.++... ... .++++++.+++.+..+. .+++ ....|||||||||+|
T Consensus 74 v~q~~~~~~~-tv~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv~l 141 (229)
T 2pze_A 74 CSQFSWIMPG-TIKENIIFGVSY------DEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISL 141 (229)
T ss_dssp ECSSCCCCSB-CHHHHHHTTSCC------CHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHHHH
T ss_pred EecCCcccCC-CHHHHhhccCCc------ChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHHHH
Confidence 9999998875 999999885321 111 12334444454432222 2221 245699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRA-LRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~-L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||+++. + ..+|++++|.+ |++++.|+++++.
T Consensus 142 Aral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~~~~ 217 (229)
T 2pze_A 142 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHE-GSSYFYGTFSELQ 217 (229)
T ss_dssp HHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHCSEEEEEET-TEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHH-H-HhCCEEEEEEC-CEEEEECCHHHHH
Confidence 9999999999999999999999999999997 45554 48999999999874 3 56999999987 5788999988764
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.3e-40 Score=401.72 Aligned_cols=216 Identities=25% Similarity=0.397 Sum_probs=181.2
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||+++|+++++.+|+|||++|++||++||+||||||||||+++|+|++. |++|+|.+||+++. ...+++.
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEhhhCCHHHHhcC
Confidence 589999999996433679999999999999999999999999999999999765 68999999998853 3456788
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcccc-------ccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRD-------SLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d-------~~vg~~~~rgLSGGQrQR 650 (1111)
||||||++.+++ .||+|||.++.. + ... .+.++++++.+|+.+..+ +.+++ .+..||||||||
T Consensus 419 i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr 488 (582)
T 3b5x_A 419 FALVSQNVHLFN-DTIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQR 488 (582)
T ss_pred eEEEcCCCcccc-ccHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHH
Confidence 999999999986 499999998641 0 111 123567777777765433 33443 345799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
|+|||||+++|++||||||||+||+.++..+.+.|+++. +|+|+|++||+++. .+.+|++++|++ |++++.|+.++
T Consensus 489 ~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~~~ 564 (582)
T 3b5x_A 489 VAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLST--IEQADEILVVDE-GEIIERGRHAD 564 (582)
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEEC-CEEEEECCHHH
Confidence 999999999999999999999999999999999999986 49999999999874 367999999987 57899999988
Q ss_pred HH
Q 001270 731 VE 732 (1111)
Q Consensus 731 l~ 732 (1111)
+.
T Consensus 565 l~ 566 (582)
T 3b5x_A 565 LL 566 (582)
T ss_pred HH
Confidence 75
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.3e-40 Score=401.56 Aligned_cols=217 Identities=25% Similarity=0.413 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||+++|+++++.+|+||||+|++||++||+||||||||||+++|+|++. |++|+|.+||+++. ...+++.
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHHHHHHT
T ss_pred cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEccccCHHHHHhh
Confidence 489999999996333679999999999999999999999999999999999765 68999999999864 2346778
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccc-------cccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVR-------DSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~-------d~~vg~~~~rgLSGGQrQR 650 (1111)
||||||++.+++. ||+||+.++.. + ...+ ++++++++.+|+.+.. ++.+++ .+..||||||||
T Consensus 419 i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qr 488 (582)
T 3b60_A 419 VALVSQNVHLFND-TVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQR 488 (582)
T ss_dssp EEEECSSCCCCSS-BHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHH
T ss_pred CeEEccCCcCCCC-CHHHHHhccCC---C-CCCH----HHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHH
Confidence 9999999999874 99999998641 0 1111 2356677777775433 344443 346799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
|+|||||+++|++||||||||+||+.++..+.+.|+++.+ |+|+|++||+++. + +.+|++++|++ |++++.|++++
T Consensus 489 l~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~~ 564 (582)
T 3b60_A 489 IAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVED-GIIVERGTHSE 564 (582)
T ss_dssp HHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEET-TEEEEEECHHH
T ss_pred HHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEEC-CEEEEecCHHH
Confidence 9999999999999999999999999999999999999864 9999999999975 3 67999999987 57899999988
Q ss_pred HHH
Q 001270 731 VEE 733 (1111)
Q Consensus 731 l~~ 733 (1111)
+.+
T Consensus 565 l~~ 567 (582)
T 3b60_A 565 LLA 567 (582)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 40
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=8.1e-41 Score=361.03 Aligned_cols=209 Identities=24% Similarity=0.385 Sum_probs=162.7
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 581 (1111)
|+++||+++|+++++.+|+||||+|++||+++|+||||||||||||+|+|++. |.+|+|.++| .||||
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g----------~i~~v 71 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG----------SVAYV 71 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----------CEEEE
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----------EEEEE
Confidence 78999999995334679999999999999999999999999999999999875 6899999998 39999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 582 PQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV-RDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 582 ~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
+|++.+ +.+||+|||.++... .. ...+......++.+.+++.+. .++.++ ..+..|||||||||+|||||+.+
T Consensus 72 ~Q~~~~-~~~tv~enl~~~~~~--~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~ 145 (237)
T 2cbz_A 72 PQQAWI-QNDSLRENILFGCQL--EE--PYYRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLARAVYSN 145 (237)
T ss_dssp CSSCCC-CSEEHHHHHHTTSCC--CT--THHHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHHHHHHHC
T ss_pred cCCCcC-CCcCHHHHhhCcccc--CH--HHHHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHHHhcC
Confidence 999865 578999999886421 10 111110011112223333211 111122 12446999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALR---REALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~---~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+||||||||+|||+.++..+++.|+ ++. +|+|||++||+++.. ..+|++++|.+ |++++.|+++++.
T Consensus 146 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~--~~~d~v~~l~~-G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 146 ADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYL--PQVDVIIVMSG-GKISEMGSYQELL 216 (237)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTG--GGSSEEEEEET-TEEEEEECHHHHH
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHH--HhCCEEEEEeC-CEEEEeCCHHHHh
Confidence 99999999999999999999999995 333 589999999999753 57999999987 5788999998774
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4.1e-40 Score=398.32 Aligned_cols=218 Identities=27% Similarity=0.407 Sum_probs=181.5
Q ss_pred E-EEEEeEEEEEcCC-cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccc
Q 001270 501 E-VSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYK 575 (1111)
Q Consensus 501 ~-L~~~nLs~~y~~~-~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r 575 (1111)
. |+++||+++|+++ ++.+|+||||+|++||++||+||||||||||+++|+|++. |++|+|.++|+++. ...++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 340 GALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp CCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETTTBCHHHHH
T ss_pred CeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhhhCCHHHHH
Confidence 5 8999999999643 3579999999999999999999999999999999999765 68999999999864 23467
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCCCHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV-------RDSLVGTVEKRGISGGQR 648 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-------~d~~vg~~~~rgLSGGQr 648 (1111)
+.||||+|++.+++ .||+|||.++.... .... .+.++++++.+|+.+. .|+.+++ .+..||||||
T Consensus 418 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq~ 489 (595)
T 2yl4_A 418 SKIGTVSQEPILFS-CSIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQK 489 (595)
T ss_dssp HSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHHH
T ss_pred hceEEEccCCcccC-CCHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHHH
Confidence 78999999999986 59999999864311 0111 1346777888877543 4555654 4567999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCH
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSV 728 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~ 728 (1111)
|||+|||||+++|+|||||||||+||+.++..+.+.|+++.+ |+|+|++||+++. + +.+|++++|++ |++++.|++
T Consensus 490 qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 565 (595)
T 2yl4_A 490 QRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST-I-KNANMVAVLDQ-GKITEYGKH 565 (595)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH-H-HHSSEEEEEET-TEEEEEECS
T ss_pred HHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999999875 8999999999874 3 67999999987 578999998
Q ss_pred hhHH
Q 001270 729 KKVE 732 (1111)
Q Consensus 729 ~~l~ 732 (1111)
+++.
T Consensus 566 ~~l~ 569 (595)
T 2yl4_A 566 EELL 569 (595)
T ss_dssp CC--
T ss_pred HHHH
Confidence 8764
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-40 Score=401.51 Aligned_cols=215 Identities=26% Similarity=0.407 Sum_probs=177.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccccc
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKI 577 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~ 577 (1111)
.|+++||+++|++ ++.+|+||||+|++||++||+||||||||||+++|+|++. |++|+|.+||+++. ...+|++
T Consensus 354 ~i~~~~v~~~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 354 EIEFKNVWFSYDK-KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp CEEEEEEECCSSS-SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEEEEEECCC-CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEhhhCCHHHHHhc
Confidence 5899999999953 4579999999999999999999999999999999999775 68999999999863 3456789
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCCCHHHHHH
Q 001270 578 IGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV-------RDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 578 IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-------~d~~vg~~~~rgLSGGQrQR 650 (1111)
||||+|++.+++ .||+|||.++.... .++ .++++++..++.+. .++.+++ .+..||||||||
T Consensus 431 i~~v~Q~~~lf~-~tv~eni~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qr 499 (598)
T 3qf4_B 431 IGIVLQDTILFS-TTVKENLKYGNPGA-----TDE----EIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQL 499 (598)
T ss_dssp EEEECTTCCCCS-SBHHHHHHSSSTTC-----CTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHH
T ss_pred eEEEeCCCcccc-ccHHHHHhcCCCCC-----CHH----HHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHH
Confidence 999999999885 59999999863211 111 13344444444332 2333432 335699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhh
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKK 730 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~ 730 (1111)
|+|||||+++|+|||||||||+||+.++..+.+.|+++. +|+|+|+|||+++. + +.+|++++|++ |++++.|++++
T Consensus 500 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~-G~i~~~g~~~~ 575 (598)
T 3qf4_B 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD-GEIVEMGKHDE 575 (598)
T ss_dssp HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS-SSEEECSCHHH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCHHH
Confidence 999999999999999999999999999999999999985 68999999999985 3 56999999986 57899999998
Q ss_pred HHH
Q 001270 731 VEE 733 (1111)
Q Consensus 731 l~~ 733 (1111)
+.+
T Consensus 576 l~~ 578 (598)
T 3qf4_B 576 LIQ 578 (598)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.1e-39 Score=420.66 Aligned_cols=218 Identities=25% Similarity=0.413 Sum_probs=184.3
Q ss_pred EEEEEeEEEEEcCC-cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccc
Q 001270 501 EVSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~-~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 576 (1111)
.|+|+||+|+|+.+ +.+||+||||+|++||.+||+|+||||||||+++|.|++. |.+|+|++||.++. .+.+|+
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHT
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEhhhCCHHHHHh
Confidence 68999999999643 4579999999999999999999999999999999999765 68999999999863 457899
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGL-------QTVRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL-------~~~~d~~vg~~~~rgLSGGQrQ 649 (1111)
+|+|||||+.+|.. ||+|||.|+... ...+.+ .+.++++..++ .+-.|+.+|+ .+..|||||||
T Consensus 1154 ~i~~V~Qdp~LF~g-TIreNI~~gld~---~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQ 1224 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFDC-SIAENIIYGLDP---SSVTMA----QVEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQ 1224 (1321)
T ss_dssp TEEEECSSCCCCSE-EHHHHHSSSSCT---TTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHH
T ss_pred heEEECCCCEeeCc-cHHHHHhccCCC---CCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHH
Confidence 99999999999964 999999887421 122222 24455555554 3346778886 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
|++|||||+++|+|||||||||+||+++...|.+.|+++. +|+|+|+|+|+++. .+.+|+|++|++ |+++++|+++
T Consensus 1225 riaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~-G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1225 RIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN-GTIIEKGTHT 1300 (1321)
T ss_dssp HHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS-SSEEEEECHH
T ss_pred HHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999998754 58999999999984 378999999976 5899999999
Q ss_pred hHHH
Q 001270 730 KVEE 733 (1111)
Q Consensus 730 ~l~~ 733 (1111)
++.+
T Consensus 1301 eLl~ 1304 (1321)
T 4f4c_A 1301 QLMS 1304 (1321)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9874
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.5e-38 Score=414.34 Aligned_cols=222 Identities=27% Similarity=0.417 Sum_probs=182.6
Q ss_pred EEEEEeEEEEEcC-CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccc
Q 001270 501 EVSFKDLTLTLKG-KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~-~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 576 (1111)
.|+++||+|+|++ .++.+|+||||+|++||.+||+||||||||||+++|.|++. +.+|+|.+||.++. ...+|+
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCccchhccHHHHhh
Confidence 6899999999974 35689999999999999999999999999999999999765 68999999999863 456788
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
+||||+|++.+|. .||+|||.|+......+.+.++.+...+++.++.| .+-.++.+|+ .+..||||||||++||||
T Consensus 493 ~i~~v~Q~~~Lf~-~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~l--p~G~~T~vGe-~G~~LSGGQkQRiaiARA 568 (1321)
T 4f4c_A 493 NVAVVSQEPALFN-CTIEENISLGKEGITREEMVAACKMANAEKFIKTL--PNGYNTLVGD-RGTQLSGGQKQRIAIARA 568 (1321)
T ss_dssp HEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHS--TTTTSSEESS-SSCCCCHHHHHHHHHHHH
T ss_pred cccccCCcceeeC-CchhHHHhhhcccchHHHHHHHHHHccchhHHHcC--CCCCccEecC-CCCCCCHHHHHHHHHHHH
Confidence 9999999999985 59999999975321111111111111222333332 3445778886 455799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
|+++|+|||||||||+||+.++..+.+.|+++. +|+|+|+|+|+++. .+.+|+|++|++ |++++.|+.+++.
T Consensus 569 l~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~--i~~aD~Iivl~~-G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 569 LVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLST--IRNADLIISCKN-GQVVEVGDHRALM 640 (1321)
T ss_dssp HTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTT--TTTCSEEEEEET-TEEEEEECHHHHH
T ss_pred HccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHH--HHhCCEEEEeeC-CeeeccCCHHHHH
Confidence 999999999999999999999999999999875 58999999999984 489999999986 5899999999985
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=6.4e-38 Score=348.21 Aligned_cols=199 Identities=25% Similarity=0.389 Sum_probs=151.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||++.+ +.+|+||||+|++||+++|+||||||||||||+|+|++. +++|+|.++| .|||
T Consensus 40 ~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g----------~i~~ 103 (290)
T 2bbs_A 40 SLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISF 103 (290)
T ss_dssp ----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----------CEEE
T ss_pred eEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----------EEEE
Confidence 47889999852 469999999999999999999999999999999999765 6899999998 3999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccc-------cccCccCCCCCHHHHHHHHH
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDS-------LVGTVEKRGISGGQRKRVHV 653 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~-------~vg~~~~rgLSGGQrQRVaI 653 (1111)
|||++.+++. ||+||+. +.. . ... .++++++.+++.+..+. .++. .+..|||||||||+|
T Consensus 104 v~Q~~~l~~~-tv~enl~-~~~--~----~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~l 170 (290)
T 2bbs_A 104 CSQNSWIMPG-TIKENII-GVS--Y----DEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISL 170 (290)
T ss_dssp ECSSCCCCSS-BHHHHHH-TTC--C----CHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHH
T ss_pred EeCCCccCcc-cHHHHhh-Ccc--c----chH----HHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHH
Confidence 9999988875 9999997 321 1 111 12334455555433222 2221 235699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 654 GLEMVMEPSLLLLDEPTSGLDSASSQLLLRAL-RREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 654 ArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L-~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++. + ..+|++++|.+ |++++.|+++++.
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~-~-~~~d~i~~l~~-G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHE-GSSYFYGTFSELQ 246 (290)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHSSEEEEEET-TEEEEEECHHHHH
T ss_pred HHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CeEEEeCCHHHHh
Confidence 99999999999999999999999999999974 4553 58999999999864 3 56999999986 5788999998874
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.6e-37 Score=403.76 Aligned_cols=224 Identities=27% Similarity=0.426 Sum_probs=180.0
Q ss_pred eEEEEEeEEEEEcCC-cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---ccccc
Q 001270 500 IEVSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYK 575 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~-~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r 575 (1111)
..|+++||+|+|+++ ++.+|+||||+|++||++||+||||||||||+++|+|++. +++|+|.++|+++. ...+|
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~i~~~~~~~~r 463 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQDIRTINVRYLR 463 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTEEGGGSCHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEHHhCCHHHHH
Confidence 358999999999643 3579999999999999999999999999999999999765 68999999999853 34577
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
+.||||+|++.+++. ||+|||.++........+.+..+...+++.++.+ .+-.++.+|+ .+..|||||||||+|||
T Consensus 464 ~~i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~-~g~~LSgGq~QriaiAR 539 (1284)
T 3g5u_A 464 EIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL--PHQFDTLVGE-RGAQLSGGQKQRIAIAR 539 (1284)
T ss_dssp HHEEEECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHS--TTGGGCCCSS-SSCSSCHHHHHHHHHHH
T ss_pred hheEEEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhc--cccccccccC-CCCccCHHHHHHHHHHH
Confidence 889999999999865 9999999975321111111111111223344443 2334566665 45579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHH
Q 001270 656 EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 656 ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~ 733 (1111)
||+.+|+|||||||||+||+.++..+.+.|+++. +|+|+|+|+|+++. .+.+|++++|++ |++++.|+.+++.+
T Consensus 540 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--i~~~d~i~vl~~-G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 540 ALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST--VRNADVIAGFDG-GVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH--HTTCSEEEECSS-SCCCCEECHHHHHH
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEEC-CEEEEECCHHHHHh
Confidence 9999999999999999999999999999998764 58999999999874 367999999976 57899999998753
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.3e-36 Score=390.33 Aligned_cols=218 Identities=25% Similarity=0.444 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEcCC-cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccc
Q 001270 501 EVSFKDLTLTLKGK-NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKK 576 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~-~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~ 576 (1111)
.|+++||+++|+++ ++.+|+||||+|++||++||+||||||||||+++|+|++. +.+|+|.+||+++. ...+|+
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCTTSSCHHHHTT
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEcccCCHHHHHh
Confidence 58999999999643 3469999999999999999999999999999999999765 68999999998864 345788
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcC-------CCccccccccCccCCCCCHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLG-------LQTVRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LG-------L~~~~d~~vg~~~~rgLSGGQrQ 649 (1111)
+||||||++.++ ..||+|||.++.... .....+ +.+.++..+ +.+-.|+.+|+ .+..|||||||
T Consensus 1108 ~i~~v~Q~~~l~-~~ti~eNi~~~~~~~---~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Q 1178 (1284)
T 3g5u_A 1108 QLGIVSQEPILF-DCSIAENIAYGDNSR---VVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQ 1178 (1284)
T ss_dssp SCEEEESSCCCC-SSBHHHHHTCCCSSC---CCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHH
T ss_pred ceEEECCCCccc-cccHHHHHhccCCCC---CCCHHH----HHHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHH
Confidence 999999999887 469999998864321 111111 223333333 33345666775 45679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHh
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVK 729 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~ 729 (1111)
||+|||||+++|+||||||||+|||+.++..|.+.|+++ .+|+|||+|+|+++. + +.+|++++|++ |++++.|+++
T Consensus 1179 rv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~-G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1179 RIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN-GKVKEHGTHQ 1254 (1284)
T ss_dssp HHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET-BEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999999999874 469999999999985 3 67999999986 6899999999
Q ss_pred hHHH
Q 001270 730 KVEE 733 (1111)
Q Consensus 730 ~l~~ 733 (1111)
++.+
T Consensus 1255 ~l~~ 1258 (1284)
T 3g5u_A 1255 QLLA 1258 (1284)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5e-35 Score=354.20 Aligned_cols=206 Identities=25% Similarity=0.322 Sum_probs=175.2
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
..++++|+++.|+ + ..|+++||+|++||++||+|||||||||||++|+|+.. +++|+|.+ ...||
T Consensus 356 ~~l~~~~l~~~~~--~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~ 420 (607)
T 3bk7_A 356 TLVEYPRLVKDYG--S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVA 420 (607)
T ss_dssp EEEEECCEEEECS--S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEE
T ss_pred eEEEEeceEEEec--c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE----------eeEEE
Confidence 4689999999984 2 37999999999999999999999999999999999765 57899875 24699
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
||||+..+.+.+||.|++....... . ...+.++++++.+||.+..++.+++ |||||||||+|||||+.
T Consensus 421 ~v~Q~~~~~~~~tv~e~~~~~~~~~----~---~~~~~~~~~l~~~~l~~~~~~~~~~-----LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 421 YKPQYIKAEYEGTVYELLSKIDSSK----L---NSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLR 488 (607)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHH----H---HCHHHHHHTHHHHTCTTTTTSBGGG-----CCHHHHHHHHHHHHHTS
T ss_pred EEecCccCCCCCcHHHHHHhhhccC----C---CHHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHh
Confidence 9999988778899999987641111 0 1123578899999999888888876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCeEEEEeC-CcEEEEecCHhhHHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREA-LEGVNICLVVHQPSYALFRMFDDLVLLAK-GGLTVYHGSVKKVEE 733 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la-~~G~TVIivtHq~~~~i~~~~D~vilL~~-GG~iv~~G~~~~l~~ 733 (1111)
+|+||||||||+|||+.++..++++|++++ ++|+|||+||||++. +..++|++++|.+ .|.++..|+++++..
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~-~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM-IDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999987 469999999999975 4578999999974 256778899988754
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=6.3e-35 Score=349.19 Aligned_cols=206 Identities=25% Similarity=0.313 Sum_probs=174.6
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
..++++|+++.|+ + ..|+++||+|++||++||+|||||||||||++|+|+.. +.+|+|.+ ...||
T Consensus 286 ~~l~~~~l~~~~~--~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~ 350 (538)
T 1yqt_A 286 TLVTYPRLVKDYG--S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVA 350 (538)
T ss_dssp EEEEECCEEEEET--T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEE
T ss_pred eEEEEeeEEEEEC--C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE----------CceEE
Confidence 4689999999994 2 47999999999999999999999999999999999765 57899875 24699
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
||+|+....+.+||.|++....... .. ..+.++++++.+|+.+..++.+++ |||||||||+|||+|+.
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~~~----~~---~~~~~~~~l~~~~l~~~~~~~~~~-----LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDASK----LN---SNFYKTELLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLR 418 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHH----HT---CHHHHHHTTTTTTCGGGTTSBGGG-----CCHHHHHHHHHHHHHTS
T ss_pred EEecCCcCCCCCcHHHHHHhhhccC----CC---HHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHHh
Confidence 9999988778899999886531111 11 123567889999998888888776 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeC-CcEEEEecCHhhHHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAK-GGLTVYHGSVKKVEE 733 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~-GG~iv~~G~~~~l~~ 733 (1111)
+|+||||||||+|||+.++..|+++|+++++ .|.|||+||||++. +..++|++++|.+ .|.++..|+++++..
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~-~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM-IDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH-HHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999999999874 59999999999975 4579999999974 256778899988754
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.8e-34 Score=343.37 Aligned_cols=206 Identities=22% Similarity=0.335 Sum_probs=172.1
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
..++++|+++.|++ ..|+++|++|++||++||+||||||||||+++|+|+.. +++|+|.++| +.++
T Consensus 268 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~---------~~i~ 333 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------QILS 333 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC---------CCEE
T ss_pred ceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC---------eeeE
Confidence 46889999999942 46888999999999999999999999999999999775 6889998765 3589
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|++|+......+||+||+.+...... .. ....++++++.+||.+..++.+++ |||||||||+|||||+.
T Consensus 334 ~~~q~~~~~~~~tv~~~l~~~~~~~~----~~--~~~~~~~~l~~~~l~~~~~~~~~~-----LSGGq~QRv~iAraL~~ 402 (538)
T 3ozx_A 334 YKPQRIFPNYDGTVQQYLENASKDAL----ST--SSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAK 402 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHCSSTT----CT--TSHHHHHTTTTTTGGGCTTSBGGG-----CCHHHHHHHHHHHHHHS
T ss_pred eechhcccccCCCHHHHHHHhhhhcc----ch--hHHHHHHHHHHcCCHHHhcCChhh-----CCHHHHHHHHHHHHHHc
Confidence 99999776668899999987422110 01 112467889999999888888876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCC-cEEEEecCHhhH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKG-GLTVYHGSVKKV 731 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~G-G~iv~~G~~~~l 731 (1111)
+|+||||||||+|||+.++..++++|+++++ .|.|||+||||++. +..++|++++|.++ +.....+++.++
T Consensus 403 ~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~-~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI-HDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeCCcceeccCCChHHH
Confidence 9999999999999999999999999999975 59999999999975 45789999999742 345556666544
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-33 Score=338.43 Aligned_cols=203 Identities=21% Similarity=0.241 Sum_probs=167.2
Q ss_pred EeEEEEEcCCcceeEeeeEEEEeCC-----eEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 505 KDLTLTLKGKNKHLLRCVTGKIRPG-----RITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 505 ~nLs~~y~~~~k~IL~~VS~~I~~G-----eivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
++++++|+. .+.+++++||++.+| |+++|+|||||||||||++|+|+.. +++|+. . .+..++
T Consensus 350 ~~~~~~y~~-~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~----~~~~i~ 416 (608)
T 3j16_B 350 ASRAFSYPS-LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------I----PKLNVS 416 (608)
T ss_dssp SSSCCEECC-EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------C----CSCCEE
T ss_pred cceeEEecC-cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------c----cCCcEE
Confidence 566777753 346899999999999 7899999999999999999999875 567752 1 134699
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|++|+.......||+|++...... .... ...++++++.+||.+..++.+++ |||||||||+|||||+.
T Consensus 417 ~~~q~~~~~~~~tv~e~~~~~~~~----~~~~---~~~~~~~l~~l~l~~~~~~~~~~-----LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 417 MKPQKIAPKFPGTVRQLFFKKIRG----QFLN---PQFQTDVVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGI 484 (608)
T ss_dssp EECSSCCCCCCSBHHHHHHHHCSS----TTTS---HHHHHHTHHHHTSTTTSSSBSSS-----CCHHHHHHHHHHHHTTS
T ss_pred EecccccccCCccHHHHHHHHhhc----cccc---HHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHHh
Confidence 999997766678999987543211 1111 12467889999999988888876 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCeEEEEeC-CcEEEEecCHhhHHH
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREA-LEGVNICLVVHQPSYALFRMFDDLVLLAK-GGLTVYHGSVKKVEE 733 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la-~~G~TVIivtHq~~~~i~~~~D~vilL~~-GG~iv~~G~~~~l~~ 733 (1111)
+|+||||||||+|||+.++..++++|++++ +.|+|||+||||++. +..++|++++|.+ .|+++..|+++++..
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~-~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIM-ATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH-HHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999999999999999999986 459999999999975 4588999999975 267899999988754
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.6e-33 Score=343.14 Aligned_cols=210 Identities=23% Similarity=0.315 Sum_probs=140.1
Q ss_pred cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHH---------------------HHHhcCCCCCC-----ceeEEEECCee
Q 001270 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFL---------------------SALAGKAIACK-----ATGLILINGKN 568 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLL---------------------kiLaGl~~~~~-----~sG~I~inG~~ 568 (1111)
.+++|+||||+|++||++||+||||||||||+ +++.|+..+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 77777654311 14667777754
Q ss_pred CCcccccccEEEEccCCCC-------------------CCCCCHHHHHHHHHHhhccccchHH-----HHHHHHHHHHHH
Q 001270 569 EPIHSYKKIIGFVPQDDIV-------------------HGNLTVEENLWFHARCRLSAHLAKA-----DKVLVIERVIDT 624 (1111)
Q Consensus 569 ~~~~~~r~~IgyV~Qd~~l-------------------~~~LTV~EnL~f~a~~~~~~~~~~~-----~~~~~v~~vL~~ 624 (1111)
... ..++.+|+|+|...+ ++.+||+||+.+............. +......++++.
T Consensus 110 ~~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred hhc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 321 223456666654332 3568999999875322111100000 000111235888
Q ss_pred cCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 001270 625 LGLQTV-RDSLVGTVEKRGISGGQRKRVHVGLEMVMEPS--LLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQ 701 (1111)
Q Consensus 625 LGL~~~-~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~--lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq 701 (1111)
+||.+. .++.+++ |||||||||+|||||+.+|+ ||||||||+|||+.++..|++.|++++++|.|||+||||
T Consensus 189 ~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999865 5777766 99999999999999999998 999999999999999999999999998889999999999
Q ss_pred ccHHHHHhcCeEEEEe-----CCcEEEEecCHhhHH
Q 001270 702 PSYALFRMFDDLVLLA-----KGGLTVYHGSVKKVE 732 (1111)
Q Consensus 702 ~~~~i~~~~D~vilL~-----~GG~iv~~G~~~~l~ 732 (1111)
++. ...+|++++|. ++|++++.|+++++.
T Consensus 264 ~~~--~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 264 EDT--MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HHH--HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHH--HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 874 35799999993 346889999998864
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=8.4e-34 Score=343.50 Aligned_cols=192 Identities=26% Similarity=0.279 Sum_probs=157.1
Q ss_pred EeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEE---------EECCeeCCc----
Q 001270 505 KDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLI---------LINGKNEPI---- 571 (1111)
Q Consensus 505 ~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I---------~inG~~~~~---- 571 (1111)
+||+++|++ ...+|++|| +|++||+++|+||||||||||||+|+|++. |++|++ .++|.++..
T Consensus 95 ~~ls~~yg~-~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~--p~~G~~~~~~~~~~~~~~G~~~~~~~~~ 170 (607)
T 3bk7_A 95 EDCVHRYGV-NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI--PNLCEDNDSWDNVIRAFRGNELQNYFER 170 (607)
T ss_dssp GSEEEECST-TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC--CCTTTTCCCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECC-CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC--CCCCccccccchhhheeCCEehhhhhhh
Confidence 788999943 225899999 999999999999999999999999999775 567885 456654311
Q ss_pred -ccccccEEEEccCCCCCC---CCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 001270 572 -HSYKKIIGFVPQDDIVHG---NLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 572 -~~~r~~IgyV~Qd~~l~~---~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQ 647 (1111)
...+..+++++|.....+ ..||.||+... .. .++++++++.+||.+..++.+++ |||||
T Consensus 171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~------~~------~~~~~~~L~~lgL~~~~~~~~~~-----LSGGe 233 (607)
T 3bk7_A 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV------DE------VGKFEEVVKELELENVLDRELHQ-----LSGGE 233 (607)
T ss_dssp HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT------CC------SSCHHHHHHHTTCTTGGGSBGGG-----CCHHH
T ss_pred hhhhhcceEEeechhhhchhhccccHHHHhhhh------HH------HHHHHHHHHHcCCCchhCCChhh-----CCHHH
Confidence 012345889998743322 23999998631 00 12367899999999988988876 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeC
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAK 718 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~ 718 (1111)
||||+|||||+.+|+||||||||++||+.++..+++.|++++++|.|||+||||++. +..++|++++|.+
T Consensus 234 kQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~-~~~~adri~vl~~ 303 (607)
T 3bk7_A 234 LQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAV-LDYLSDVIHVVYG 303 (607)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHH-HHhhCCEEEEECC
Confidence 999999999999999999999999999999999999999998789999999999875 4578999999974
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.3e-32 Score=341.23 Aligned_cols=200 Identities=20% Similarity=0.308 Sum_probs=165.8
Q ss_pred ceEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccE
Q 001270 499 LIEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKII 578 (1111)
Q Consensus 499 ~i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 578 (1111)
...|...|++++| +++.+|+||||+|++||+++|+||||||||||||+|+| |+| +|.+.. . ..++
T Consensus 433 ~~~L~~~~ls~~y--g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~-~--~~~~ 497 (986)
T 2iw3_A 433 GEDLCNCEFSLAY--GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQ-E--ECRT 497 (986)
T ss_dssp SCEEEEEEEEEEE--TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCT-T--TSCE
T ss_pred cceeEEeeEEEEE--CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCccc-c--ceeE
Confidence 4467778999999 45689999999999999999999999999999999996 332 443321 1 1247
Q ss_pred EEEccCC-CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 579 GFVPQDD-IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 579 gyV~Qd~-~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
+|++|+. .+++.+||.||+.+ ... .. .++++++++.+||. +..++.+++ |||||||||+|||+
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~~-----LSGGqkQRvaLArA 562 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPISA-----LSGGWKMKLALARA 562 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGGG-----CCHHHHHHHHHHHH
T ss_pred EEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCccc-----CCHHHHHHHHHHHH
Confidence 9999985 67788999999976 111 11 34578899999995 677888776 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEE-EecCHhhHHH
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTV-YHGSVKKVEE 733 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv-~~G~~~~l~~ 733 (1111)
|+.+|+||||||||+|||+.++..+.+.|++ .|.|||++|||++. +.+++|++++|.+| +++ +.|+.+++.+
T Consensus 563 L~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~-l~~~adrii~L~~G-~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 563 VLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVF-LDNVCEYIINYEGL-KLRKYKGNFTEFVK 635 (986)
T ss_dssp HHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHH-HHHHCSEEEEEETT-EEEEEESCHHHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHH-HHHhCCEEEEEECC-eeecCCCCHHHHHh
Confidence 9999999999999999999999999999987 58999999999875 55789999999875 554 7899987654
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.7e-33 Score=336.83 Aligned_cols=192 Identities=24% Similarity=0.262 Sum_probs=156.9
Q ss_pred EeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEE---------EECCeeCCc----
Q 001270 505 KDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLI---------LINGKNEPI---- 571 (1111)
Q Consensus 505 ~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I---------~inG~~~~~---- 571 (1111)
+||+++|++ ...+|+||| +|++||+++|+||||||||||||+|+|++. |++|++ .++|.+...
T Consensus 25 ~~ls~~yg~-~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~--p~~G~~~~~~~~~~~~~~g~~~~~~~~~ 100 (538)
T 1yqt_A 25 EDCVHRYGV-NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI--PNLCGDNDSWDGVIRAFRGNELQNYFEK 100 (538)
T ss_dssp CCEEEECST-TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSHHHHHHHTTTSTHHHHHHH
T ss_pred cCcEEEECC-ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCccCcchhhhHHhhCCccHHHHHHH
Confidence 689999943 225899999 999999999999999999999999999765 567885 356654311
Q ss_pred -ccccccEEEEccCCCCCCC---CCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 001270 572 -HSYKKIIGFVPQDDIVHGN---LTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 572 -~~~r~~IgyV~Qd~~l~~~---LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQ 647 (1111)
...+..+++++|+...++. .||.|++.... . .++++++++.+||.+..++.+++ |||||
T Consensus 101 ~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-------~-----~~~~~~~l~~lgl~~~~~~~~~~-----LSgGe 163 (538)
T 1yqt_A 101 LKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-------E-----TGKLEEVVKALELENVLEREIQH-----LSGGE 163 (538)
T ss_dssp HHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC-------S-----SSCHHHHHHHTTCTTTTTSBGGG-----CCHHH
T ss_pred HHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh-------H-----HHHHHHHHHHcCCChhhhCChhh-----CCHHH
Confidence 0123468999997544332 38999885310 0 12467899999999888888876 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeC
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAK 718 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~ 718 (1111)
||||+||+||+.+|+||||||||++||+.++..+++.|++++++|.|||+||||++. +..++|++++|.+
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~-~~~~~dri~vl~~ 233 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAV-LDYLSDIIHVVYG 233 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEcC
Confidence 999999999999999999999999999999999999999998889999999999875 5678999999964
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=2.1e-32 Score=342.90 Aligned_cols=207 Identities=22% Similarity=0.343 Sum_probs=160.9
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|+++||+++|+++.+.+|+||||+|++||+++|+||||||||||||+|+|++. +++|+|.++|. ..|||
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~--------~~I~y 740 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN--------CRIAY 740 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT--------CCEEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcCc--------cceEe
Confidence 589999999996434679999999999999999999999999999999999765 68999999862 24899
Q ss_pred EccCCCC----CCCCCHHHHHHHHHHhh----------------------------------------------------
Q 001270 581 VPQDDIV----HGNLTVEENLWFHARCR---------------------------------------------------- 604 (1111)
Q Consensus 581 V~Qd~~l----~~~LTV~EnL~f~a~~~---------------------------------------------------- 604 (1111)
|+|++.. ....|+.|++.+.....
T Consensus 741 v~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~ 820 (986)
T 2iw3_A 741 IKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECS 820 (986)
T ss_dssp ECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEE
T ss_pred eccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhh
Confidence 9997531 23468888876532100
Q ss_pred ------------cccc--------chH--------------------------HHHHHHHHHHHHHcCCCc-c-cccccc
Q 001270 605 ------------LSAH--------LAK--------------------------ADKVLVIERVIDTLGLQT-V-RDSLVG 636 (1111)
Q Consensus 605 ------------~~~~--------~~~--------------------------~~~~~~v~~vL~~LGL~~-~-~d~~vg 636 (1111)
.... +.. .....+++++++.+||.+ . .++.++
T Consensus 821 ~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~ 900 (986)
T 2iw3_A 821 FLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIR 900 (986)
T ss_dssp EEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGG
T ss_pred hhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCcc
Confidence 0000 000 001245788999999975 3 466665
Q ss_pred CccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEE
Q 001270 637 TVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLL 716 (1111)
Q Consensus 637 ~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL 716 (1111)
+ |||||||||+|||+|+.+|+||||||||+|||+.+...+++.|+++ |.|||+||||++. +.+++|++++|
T Consensus 901 ~-----LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~-v~~l~DrVivL 971 (986)
T 2iw3_A 901 G-----LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEF-TKNLTEEVWAV 971 (986)
T ss_dssp G-----CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHH-HTTTCCEEECC
T ss_pred c-----cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHH-HHHhCCEEEEE
Confidence 5 9999999999999999999999999999999999999999888764 6799999999875 45789999999
Q ss_pred eCCcEEEEecC
Q 001270 717 AKGGLTVYHGS 727 (1111)
Q Consensus 717 ~~GG~iv~~G~ 727 (1111)
.+| +++..|+
T Consensus 972 ~~G-~Iv~~G~ 981 (986)
T 2iw3_A 972 KDG-RMTPSGH 981 (986)
T ss_dssp BTT-BCCC---
T ss_pred ECC-EEEEeCC
Confidence 864 6666553
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=2.1e-31 Score=326.29 Aligned_cols=199 Identities=28% Similarity=0.354 Sum_probs=149.5
Q ss_pred cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHh----------------------cCCCCCCceeEEEECCeeCCcc
Q 001270 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALA----------------------GKAIACKATGLILINGKNEPIH 572 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLa----------------------Gl~~~~~~sG~I~inG~~~~~~ 572 (1111)
.+.+|+||||+|++||++||+||||||||||+++|. |+. ...|.|.++|.++...
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~---~~~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE---HLDKVIDIDQSPIGRT 410 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG---GCSEEEECCSSCSCSS
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc---ccCceeEeccccCCCC
Confidence 346899999999999999999999999999998764 211 2346788888654210
Q ss_pred c--------------------------------------------ccccEEEEccCCCCCC-------------------
Q 001270 573 S--------------------------------------------YKKIIGFVPQDDIVHG------------------- 589 (1111)
Q Consensus 573 ~--------------------------------------------~r~~IgyV~Qd~~l~~------------------- 589 (1111)
. .....|+++|+..+++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 0 0011344444433322
Q ss_pred -------------CCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHH
Q 001270 590 -------------NLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRVHVGL 655 (1111)
Q Consensus 590 -------------~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRVaIAr 655 (1111)
.+||+||+.|.... .. ..++.+.++.+||.. ..++.+++ |||||||||+|||
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~~------~~---~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~~qrv~iAr 556 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFASI------PK---IKRKLETLYDVGLGYMKLGQPATT-----LSGGEAQRVKLAA 556 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTTC------HH---HHHHHHHHHHTTCTTSBTTCCGGG-----CCHHHHHHHHHHH
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHHh------hh---HHHHHHHHHHcCCchhhccCCchh-----CCHHHHHHHHHHH
Confidence 47999999875421 11 123567788899964 34666655 9999999999999
Q ss_pred HHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe-----CCcEEEEecC
Q 001270 656 EMVMEP---SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA-----KGGLTVYHGS 727 (1111)
Q Consensus 656 ALl~~P---~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~-----~GG~iv~~G~ 727 (1111)
||+.+| +||||||||+|||+.++..|+++|++++++|+|||+||||++. .+.+|++++|. ++|++++.|+
T Consensus 557 aL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~--~~~~d~i~~l~~~~g~~~G~i~~~g~ 634 (670)
T 3ux8_A 557 ELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV--IKTADYIIDLGPEGGDRGGQIVAVGT 634 (670)
T ss_dssp HHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEEEEESSSGGGCCEEEEEEC
T ss_pred HHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH--HHhCCEEEEecCCcCCCCCEEEEecC
Confidence 999987 5999999999999999999999999998889999999999874 36799999993 3578999999
Q ss_pred HhhHH
Q 001270 728 VKKVE 732 (1111)
Q Consensus 728 ~~~l~ 732 (1111)
++++.
T Consensus 635 ~~~~~ 639 (670)
T 3ux8_A 635 PEEVA 639 (670)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.7e-30 Score=312.64 Aligned_cols=194 Identities=25% Similarity=0.261 Sum_probs=145.8
Q ss_pred eEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEE-----------ECCeeCCc---
Q 001270 506 DLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLIL-----------INGKNEPI--- 571 (1111)
Q Consensus 506 nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~-----------inG~~~~~--- 571 (1111)
|++++|+. +...|++++ .+++||++||+||||||||||||+|+|++. |++|+|. +.|.+...
T Consensus 82 ~~~~~Y~~-~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~--P~~G~i~~~~~~~~~~~~~~g~~~~~~~~ 157 (608)
T 3j16_B 82 HVTHRYSA-NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK--PNLGRFDDPPEWQEIIKYFRGSELQNYFT 157 (608)
T ss_dssp TEEEECST-TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSSCHHHHHHHTTTSTHHHHHH
T ss_pred CeEEEECC-CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC--CCCceEecccchhhhhheecChhhhhhhh
Confidence 56788853 335677777 689999999999999999999999999775 5789872 33322100
Q ss_pred ccccccE--EEEccCCCC------CCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 001270 572 HSYKKII--GFVPQDDIV------HGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGI 643 (1111)
Q Consensus 572 ~~~r~~I--gyV~Qd~~l------~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgL 643 (1111)
....+.+ .+.+|.... -+..++.+++.... .. ..++++++++.+||.+..++.+++ |
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~----~~~~~~~~l~~~gl~~~~~~~~~~-----L 222 (608)
T 3j16_B 158 KMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM------EK----SPEDVKRYIKILQLENVLKRDIEK-----L 222 (608)
T ss_dssp HHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC------CS----CHHHHHHHHHHHTCTGGGGSCTTT-----C
T ss_pred HHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh------hh----HHHHHHHHHHHcCCcchhCCChHH-----C
Confidence 0011112 233343211 11235555554211 01 123578899999999999988876 9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCC
Q 001270 644 SGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 644 SGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~G 719 (1111)
||||||||+|||||+.+|+||||||||++||+.++..+.+.|++++++|+|||+|||+++. +..++|++++|..+
T Consensus 223 SgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~-~~~~~drv~vl~~~ 297 (608)
T 3j16_B 223 SGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSV-LDYLSDFVCIIYGV 297 (608)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHH-HHHHCSEEEEEESC
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999998889999999999975 56899999999753
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=6.1e-30 Score=306.00 Aligned_cols=189 Identities=23% Similarity=0.211 Sum_probs=142.1
Q ss_pred eEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEE-----------EECCeeCCc---
Q 001270 506 DLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLI-----------LINGKNEPI--- 571 (1111)
Q Consensus 506 nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I-----------~inG~~~~~--- 571 (1111)
+.+.+|+.+. .-|.++. .+++||++||+||||||||||||+|+|++. |++|+| .++|+++..
T Consensus 4 ~~~~~~~~~~-f~l~~l~-~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~--p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVNG-FKLFGLP-TPKNNTILGVLGKNGVGKTTVLKILAGEII--PNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTTS-CEEECCC-CCCTTEEEEEECCTTSSHHHHHHHHTTSSC--CCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCCc-eeecCCC-CCCCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 3456664332 2232322 145999999999999999999999999765 578988 567754311
Q ss_pred c--cccccEEEEccC----CCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 001270 572 H--SYKKIIGFVPQD----DIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISG 645 (1111)
Q Consensus 572 ~--~~r~~IgyV~Qd----~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSG 645 (1111)
. .....+..+.|. +.++ ..||.|++.... ..++++++++.+|+.+..++.+++ |||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~~~-----LSg 141 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFL-KGTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDANI-----LSG 141 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTC-CSBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBGGG-----CCH
T ss_pred HHhhcccchhhccchhhhhhhhc-cCcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCChhh-----CCH
Confidence 0 011223444443 3333 348888664210 012357889999999988888876 999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeC
Q 001270 646 GQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAK 718 (1111)
Q Consensus 646 GQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~ 718 (1111)
||||||+|||||+.+|+||||||||++||+.++..+.+.|+++++ |+|||+|+|+++. +...+|++++|.+
T Consensus 142 Ge~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~-~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 142 GGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIV-LDYLTDLIHIIYG 212 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHH-HHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHH-HHhhCCEEEEecC
Confidence 999999999999999999999999999999999999999999865 9999999999975 5688999999964
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=2e-28 Score=306.67 Aligned_cols=201 Identities=23% Similarity=0.353 Sum_probs=152.7
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHH---------HHHhcCCCC----CCce------eEEEECCeeCCcc----
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFL---------SALAGKAIA----CKAT------GLILINGKNEPIH---- 572 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLL---------kiLaGl~~~----~~~s------G~I~inG~~~~~~---- 572 (1111)
...|+|||++|++|++++|+|+||||||||+ +.+.+.... .+.+ +.|.+++.++...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3579999999999999999999999999997 444443211 0112 3355554432100
Q ss_pred ----------------------------------------cccccEEEEccCCCCCC-----------------------
Q 001270 573 ----------------------------------------SYKKIIGFVPQDDIVHG----------------------- 589 (1111)
Q Consensus 573 ----------------------------------------~~r~~IgyV~Qd~~l~~----------------------- 589 (1111)
...+..|++.|+..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 00134678888776655
Q ss_pred ---------CCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 590 ---------NLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTV-RDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 590 ---------~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
.+||.|++.|.... . ...++.++|+.+||... .++.+. .|||||||||+|||||++
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~------~---~~~~~~~~L~~vGL~~~~lgq~~~-----~LSGGErQRV~LAraL~~ 822 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI------P---SIKRTLQVLHDVGLGYVKLGQPAT-----TLSGGEAQRIKLASELRK 822 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC------H---HHHHHHHHHHHTTGGGSBTTCCST-----TCCHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc------h---hHHHHHHHHHHcCCchhhccCCcc-----CCCHHHHHHHHHHHHHhh
Confidence 36888888875321 1 12346788999999753 344444 499999999999999998
Q ss_pred CC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe-----CCcEEEEecCHhhH
Q 001270 660 EP---SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA-----KGGLTVYHGSVKKV 731 (1111)
Q Consensus 660 ~P---~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~-----~GG~iv~~G~~~~l 731 (1111)
+| +||||||||+|||+.++..|++.|++++++|.|||+|+|+++. .+.+|++++|. +||++++.|+++++
T Consensus 823 ~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~--i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel 900 (916)
T 3pih_A 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDV--IKNADHIIDLGPEGGKEGGYIVATGTPEEI 900 (916)
T ss_dssp CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEEEEESSSGGGCCEEEEEESHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--HHhCCEEEEecCCCCCCCCEEEEEcCHHHH
Confidence 76 7999999999999999999999999998889999999999864 46799999993 56899999999987
Q ss_pred H
Q 001270 732 E 732 (1111)
Q Consensus 732 ~ 732 (1111)
.
T Consensus 901 ~ 901 (916)
T 3pih_A 901 A 901 (916)
T ss_dssp H
T ss_pred H
Confidence 5
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=7.2e-29 Score=309.11 Aligned_cols=209 Identities=27% Similarity=0.348 Sum_probs=160.1
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHh-cCC---------CCC---Ccee------E
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALA-GKA---------IAC---KATG------L 561 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLa-Gl~---------~~~---~~sG------~ 561 (1111)
.|+++|++. .+|+||||+|++||++||+|+||||||||+++|+ |.+ .+. ...| .
T Consensus 629 ~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 629 WLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp EEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred EEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 478888752 3699999999999999999999999999999853 211 111 1123 5
Q ss_pred EEECCeeCCc--c-----------c---------ccccEEEEccCCCCC----------------------C--------
Q 001270 562 ILINGKNEPI--H-----------S---------YKKIIGFVPQDDIVH----------------------G-------- 589 (1111)
Q Consensus 562 I~inG~~~~~--~-----------~---------~r~~IgyV~Qd~~l~----------------------~-------- 589 (1111)
|.++|.++.. . . ..+.+||++|...+. +
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 8888876521 0 0 013468888854321 1
Q ss_pred ------------------------CCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCC
Q 001270 590 ------------------------NLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGIS 644 (1111)
Q Consensus 590 ------------------------~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLS 644 (1111)
.+||.|++.|... ... ..++.++++.+||.. ..++.+.+ ||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~~gL~~~~l~~~~~~-----LS 847 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS------IPK---IKRKLETLYDVGLGYMKLGQPATT-----LS 847 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS------CHH---HHHHHHHHHHTTCSSSBTTCCGGG-----CC
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc------chh---HHHHHHHHHHcCCCcccccCchhh-----CC
Confidence 3577888776432 111 123467899999987 56777665 99
Q ss_pred HHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe----
Q 001270 645 GGQRKRVHVGLEMVMEP---SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA---- 717 (1111)
Q Consensus 645 GGQrQRVaIArALl~~P---~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~---- 717 (1111)
|||||||+||++|+.+| +||||||||+|||+.++..|++.|++++++|.|||+|+|+++. + +.+|++++|.
T Consensus 848 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~-i-~~aDrIivL~p~gG 925 (972)
T 2r6f_A 848 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV-I-KTADYIIDLGPEGG 925 (972)
T ss_dssp HHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTCSEEEEECSSST
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-H-HhCCEEEEEcCCCC
Confidence 99999999999999875 9999999999999999999999999998889999999999874 3 7899999994
Q ss_pred -CCcEEEEecCHhhHH
Q 001270 718 -KGGLTVYHGSVKKVE 732 (1111)
Q Consensus 718 -~GG~iv~~G~~~~l~ 732 (1111)
++|++++.|+++++.
T Consensus 926 ~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 926 DRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TSCCSEEEEESHHHHH
T ss_pred CCCCEEEEecCHHHHH
Confidence 467899999998874
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=1.4e-28 Score=305.83 Aligned_cols=216 Identities=22% Similarity=0.290 Sum_probs=156.3
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHH-HhcCC-------CC----------------
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSA-LAGKA-------IA---------------- 555 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLki-LaGl~-------~~---------------- 555 (1111)
..|+++|+++ .+|+||||+|++||++||+|+||||||||++. |+|++ .+
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 3588899875 26999999999999999999999999999996 66532 11
Q ss_pred CCcee-------EEEECCeeCCccc-------------cc---------ccEEEEcc----------------------C
Q 001270 556 CKATG-------LILINGKNEPIHS-------------YK---------KIIGFVPQ----------------------D 584 (1111)
Q Consensus 556 ~~~sG-------~I~inG~~~~~~~-------------~r---------~~IgyV~Q----------------------d 584 (1111)
.+.+| .|.++|.++.... +| +.+||.++ +
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 12467 7899987652110 11 11233222 1
Q ss_pred CCCCC------------------------CCCHHHHHHHHHHhhc--cccchHHHHHHHHHHHHHHcCCCcc-ccccccC
Q 001270 585 DIVHG------------------------NLTVEENLWFHARCRL--SAHLAKADKVLVIERVIDTLGLQTV-RDSLVGT 637 (1111)
Q Consensus 585 ~~l~~------------------------~LTV~EnL~f~a~~~~--~~~~~~~~~~~~v~~vL~~LGL~~~-~d~~vg~ 637 (1111)
..+++ ..++.|++.+...... .... ....++.++++.+||... .++.+.+
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~---~~~~~~~~~L~~~gL~~~~l~~~~~~ 730 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADE---SAIFRALDTLREVGLGYLRLGQPATE 730 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTS---HHHHHHHHHHHHTTCTTSBTTCCGGG
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcc---hHHHHHHHHHHHcCCCcccccCCccc
Confidence 11121 2344444432111000 0011 112357889999999873 4666654
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEE
Q 001270 638 VEKRGISGGQRKRVHVGLEMVME---PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLV 714 (1111)
Q Consensus 638 ~~~rgLSGGQrQRVaIArALl~~---P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vi 714 (1111)
|||||||||+||++|+.+ |+||||||||+|||+.+...|+++|++++++|.|||+|+|+++. + +.+|+++
T Consensus 731 -----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~-i-~~aDrii 803 (842)
T 2vf7_A 731 -----LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQV-V-AASDWVL 803 (842)
T ss_dssp -----CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTCSEEE
T ss_pred -----CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-H-HhCCEEE
Confidence 999999999999999996 79999999999999999999999999999889999999999874 4 7899999
Q ss_pred EEe-----CCcEEEEecCHhhHH
Q 001270 715 LLA-----KGGLTVYHGSVKKVE 732 (1111)
Q Consensus 715 lL~-----~GG~iv~~G~~~~l~ 732 (1111)
+|. ++|++++.|+++++.
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHT
T ss_pred EECCCCCCCCCEEEEEcCHHHHH
Confidence 994 457899999998764
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=2.5e-28 Score=305.28 Aligned_cols=209 Identities=24% Similarity=0.360 Sum_probs=157.2
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHh-c----CCCCC-Ccee-------------E
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALA-G----KAIAC-KATG-------------L 561 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLa-G----l~~~~-~~sG-------------~ 561 (1111)
.|+++|++. .+|+||||+|++||++||+|+||||||||+++|. | .+... +..| .
T Consensus 647 ~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 719 (993)
T 2ygr_A 647 QLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKL 719 (993)
T ss_dssp EEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEE
T ss_pred eEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceE
Confidence 578888752 3699999999999999999999999999999853 2 11110 1123 3
Q ss_pred EEECCeeCCc--c-----------c---------ccccEEEEccCCCCC----------------------C--------
Q 001270 562 ILINGKNEPI--H-----------S---------YKKIIGFVPQDDIVH----------------------G-------- 589 (1111)
Q Consensus 562 I~inG~~~~~--~-----------~---------~r~~IgyV~Qd~~l~----------------------~-------- 589 (1111)
|.+++.++.. . . ..+.+||++|...+. +
T Consensus 720 i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~ 799 (993)
T 2ygr_A 720 VRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEV 799 (993)
T ss_dssp ECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTT
T ss_pred EEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehh
Confidence 5556554310 0 0 013467777753321 1
Q ss_pred ------------------------CCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCC
Q 001270 590 ------------------------NLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGIS 644 (1111)
Q Consensus 590 ------------------------~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLS 644 (1111)
.+||.|++.|... ... ..++.++++.+||.. ..++.+.+ ||
T Consensus 800 c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~lgL~~~~l~~~~~~-----LS 865 (993)
T 2ygr_A 800 CQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP------IAG---VHRYLRTLVDVGLGYVRLGQPAPT-----LS 865 (993)
T ss_dssp TTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT------CHH---HHHHHHHHHHTTGGGSBTTCCGGG-----SC
T ss_pred ccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc------chH---HHHHHHHHHHcCCCcccccCcccc-----CC
Confidence 3577777776432 111 123467899999987 56676655 99
Q ss_pred HHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe----
Q 001270 645 GGQRKRVHVGLEMVMEP---SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA---- 717 (1111)
Q Consensus 645 GGQrQRVaIArALl~~P---~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~---- 717 (1111)
|||||||+||++|+.+| +||||||||+|||+.+...|+++|++++++|.|||+|+|+++. + +.+|++++|.
T Consensus 866 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~-i-~~aDrIivL~p~gg 943 (993)
T 2ygr_A 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDV-I-KTSDWIIDLGPEGG 943 (993)
T ss_dssp HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTCSEEEEEESSST
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-H-HhCCEEEEECCCcC
Confidence 99999999999999875 9999999999999999999999999998889999999999874 3 7899999995
Q ss_pred -CCcEEEEecCHhhHH
Q 001270 718 -KGGLTVYHGSVKKVE 732 (1111)
Q Consensus 718 -~GG~iv~~G~~~~l~ 732 (1111)
++|++++.|+++++.
T Consensus 944 ~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 944 AGGGTVVAQGTPEDVA 959 (993)
T ss_dssp TSCSEEEEEECHHHHH
T ss_pred CCCCEEEEecCHHHHH
Confidence 568999999998875
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.94 E-value=7.5e-27 Score=268.80 Aligned_cols=203 Identities=20% Similarity=0.227 Sum_probs=142.7
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCC------------------------------------CCcee
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIA------------------------------------CKATG 560 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~------------------------------------~~~sG 560 (1111)
.+|+++++++.+| +++|+|||||||||||++|.++... .+.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 9999999999999999999775431 13478
Q ss_pred EEEECCeeCCcc---cc-cccEEEEccCCCCCCCCCHHHHHHHHHHhhcc-----------------------c------
Q 001270 561 LILINGKNEPIH---SY-KKIIGFVPQDDIVHGNLTVEENLWFHARCRLS-----------------------A------ 607 (1111)
Q Consensus 561 ~I~inG~~~~~~---~~-r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~-----------------------~------ 607 (1111)
+|++||++++.. .+ +..+++++|++.++.. +..+...|.-..... .
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 999999986532 22 3348999999876532 555444432111000 0
Q ss_pred ----------------------cch------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC---
Q 001270 608 ----------------------HLA------KADKVLVIERVIDTLGLQTVR----------------DS---LVGT--- 637 (1111)
Q Consensus 608 ----------------------~~~------~~~~~~~v~~vL~~LGL~~~~----------------d~---~vg~--- 637 (1111)
.+. .......+++.++.+++.... ++ .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000 000112344555666654310 00 0110
Q ss_pred ---ccCCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcC
Q 001270 638 ---VEKRG-ISGGQRKRVHVGLEMVMEP--SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFD 711 (1111)
Q Consensus 638 ---~~~rg-LSGGQrQRVaIArALl~~P--~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D 711 (1111)
...+. |||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|++++ +|.|||+|||+++ +...+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 00111 6999999999999999999 9999999999999999999999999987 6899999999985 347899
Q ss_pred eEEEE----eCCcEEEEe
Q 001270 712 DLVLL----AKGGLTVYH 725 (1111)
Q Consensus 712 ~vilL----~~GG~iv~~ 725 (1111)
++++| .+| +++..
T Consensus 364 ~i~~l~k~~~~G-~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVEDG-RTVSH 380 (415)
T ss_dssp EEEEEEEEEETT-EEEEE
T ss_pred eEEEEEEeccCC-ceEEE
Confidence 99999 764 55443
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-29 Score=296.18 Aligned_cols=196 Identities=16% Similarity=0.140 Sum_probs=151.9
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCcee-E-EEECCeeCCcccccccEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG-L-ILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG-~-I~inG~~~~~~~~r~~Ig 579 (1111)
++++||++.|+ ++|+++++|++++|+||||||||||+|+|+|+.. +.+| + |+++|. .++.++
T Consensus 119 i~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~ 182 (460)
T 2npi_A 119 KYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIF 182 (460)
T ss_dssp HHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSS
T ss_pred hhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCee
Confidence 55677776662 7999999999999999999999999999999764 6889 9 999982 367799
Q ss_pred EEccCCC---CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 580 FVPQDDI---VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 580 yV~Qd~~---l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
||||+.. +...+||+||+ |+....... .. ..++.++++.+||.+..+ +. .|||||||||+|||+
T Consensus 183 ~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~--~~-----~LSgGq~qrlalAra 249 (460)
T 2npi_A 183 TVPGCISATPISDILDAQLPT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE--NK-----DLYLECISQLGQVVG 249 (460)
T ss_dssp SCSSCCEEEECCSCCCTTCTT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG--CH-----HHHHHHHHHHHHHHH
T ss_pred eeccchhhcccccccchhhhh-cccccccCc--ch---HHHHHHHHHHhCCCcccc--hh-----hhhHHHHHHHHHHHH
Confidence 9999984 34567999999 654321110 00 122456677889887655 33 499999999999999
Q ss_pred --HhhCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc--H---HHHHhcCe-----EEEEeCC
Q 001270 657 --MVMEPSL----LLLDE-PTSGLDSASSQLLLRALRREALEGVNICLVVHQPS--Y---ALFRMFDD-----LVLLAKG 719 (1111)
Q Consensus 657 --Ll~~P~l----LLLDE-PTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~--~---~i~~~~D~-----vilL~~G 719 (1111)
|+.+|++ ||||| ||++||+. ...|.+++++ .+.|+|+|+|+.+ . .+.+++|+ +++|.++
T Consensus 250 ~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~ 325 (460)
T 2npi_A 250 QRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKL 325 (460)
T ss_dssp HHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCC
T ss_pred HHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCC
Confidence 9999999 99999 99999999 5555555544 3789999999987 2 24478999 9999823
Q ss_pred cEEEEecCHhhH
Q 001270 720 GLTVYHGSVKKV 731 (1111)
Q Consensus 720 G~iv~~G~~~~l 731 (1111)
|+++ .|+++++
T Consensus 326 G~iv-~g~~~~~ 336 (460)
T 2npi_A 326 DGVS-AVDDVYK 336 (460)
T ss_dssp TTCC-CCCHHHH
T ss_pred CcEE-ECCHHHH
Confidence 4567 8988765
No 66
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=3.4e-24 Score=240.47 Aligned_cols=202 Identities=19% Similarity=0.244 Sum_probs=128.9
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC---------------------------------------------
Q 001270 520 RCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAI--------------------------------------------- 554 (1111)
Q Consensus 520 ~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~--------------------------------------------- 554 (1111)
+++++++.+| +++|+|||||||||||++|..+..
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3678889999 999999999999999999985320
Q ss_pred ---CCCceeEEEECCeeCCcc---cccccEEEEccCCCCCCCCCHHHHHHHHHHhhc-----------c-ccchHHH---
Q 001270 555 ---ACKATGLILINGKNEPIH---SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRL-----------S-AHLAKAD--- 613 (1111)
Q Consensus 555 ---~~~~sG~I~inG~~~~~~---~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~-----------~-~~~~~~~--- 613 (1111)
..+.+|.+++||++.... .....+|+.+|+..++..-++.+++......+. + ....+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 012247889999875422 223456666665544433344444422111000 0 0000000
Q ss_pred ----------------HHHHHHHHHHHcCCC------ccccccccCccCCCCCHHHHHHHHHHHHHh----hCCCEEEEe
Q 001270 614 ----------------KVLVIERVIDTLGLQ------TVRDSLVGTVEKRGISGGQRKRVHVGLEMV----MEPSLLLLD 667 (1111)
Q Consensus 614 ----------------~~~~v~~vL~~LGL~------~~~d~~vg~~~~rgLSGGQrQRVaIArALl----~~P~lLLLD 667 (1111)
....+.++++. |+. +..+..+ ..|||||||||+||++|+ .+|++||||
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~-----~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllD 248 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQKL-----SLLSGGEKALVGLALLFALMEIKPSPFYVLD 248 (322)
T ss_dssp HHHHHHHHTSCEEEC---------------CCEEECTTSCCCBG-----GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEE
T ss_pred HHHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccCch-----hhCCHHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 00001122221 221 1123333 359999999999999997 588999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeE--EEEeCCcEEEEecCHhhH
Q 001270 668 EPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDL--VLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 668 EPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~v--ilL~~GG~iv~~G~~~~l 731 (1111)
|||++||+..+..+++.|+++. +|.|||++||+++ +.+.+|++ ++|.+|...+.....++.
T Consensus 249 Ep~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 249 EVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 9999999999999999999974 5889999999975 45789976 788887777777766653
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=2e-23 Score=238.65 Aligned_cols=81 Identities=25% Similarity=0.424 Sum_probs=73.8
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeE
Q 001270 640 KRGISGGQRKRVHVGLEMV------MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDL 713 (1111)
Q Consensus 640 ~rgLSGGQrQRVaIArALl------~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~v 713 (1111)
+..|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++.++|.|||+|||+++. .+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~--~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF--SEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH--HTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH--HHhCCEE
Confidence 3459999999999999999 7999999999999999999999999999998889999999999864 5789999
Q ss_pred EEEeCCcEEE
Q 001270 714 VLLAKGGLTV 723 (1111)
Q Consensus 714 ilL~~GG~iv 723 (1111)
++|.+| +++
T Consensus 355 ~~l~~G-~i~ 363 (365)
T 3qf7_A 355 LRITGG-VVV 363 (365)
T ss_dssp EEEETT-EEC
T ss_pred EEEECC-EEE
Confidence 999874 664
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.90 E-value=2.4e-27 Score=251.40 Aligned_cols=148 Identities=19% Similarity=0.215 Sum_probs=102.4
Q ss_pred CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCH
Q 001270 514 KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTV 593 (1111)
Q Consensus 514 ~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV 593 (1111)
+.+.+|+|| ++||+++|+|||||||||||++|+|+ . +++|+|............++.||||||++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 345789996 89999999999999999999999997 4 67898842111111223567899999986
Q ss_pred HHHH-HHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001270 594 EENL-WFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSG 672 (1111)
Q Consensus 594 ~EnL-~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSG 672 (1111)
+||+ .+...... .+........++++++. | | ||||||+|||||+.+|+||||||||+|
T Consensus 76 ~enl~~~~~~~~~--~~~~~~~~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 76 NEKIDPYLRPLHD--ALRDMVEPEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp ----CTTTHHHHH--HHTTTSCTTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HHHHHHHHHHHHH--HHHHhccHHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 4555 33211000 00000001234445543 2 3 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 001270 673 LDSASSQLLLRALRREALEGVNICLVVHQPS 703 (1111)
Q Consensus 673 LD~~s~~~Il~~L~~la~~G~TVIivtHq~~ 703 (1111)
++..+++.|+++ ++|+||| +|||++
T Consensus 135 ----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 135 ----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp ----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred ----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 888999999988 6789999 999976
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=6.4e-25 Score=224.46 Aligned_cols=144 Identities=16% Similarity=0.217 Sum_probs=102.9
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCC-CCCHHHHHHH
Q 001270 521 CVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHG-NLTVEENLWF 599 (1111)
Q Consensus 521 ~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~-~LTV~EnL~f 599 (1111)
||||++++||+++|+||||||||||++++.+ |...+++ .. ..|+++|++.-.. .-++.+++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--------~~~~~~~-----d~---~~g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK--------PTEVISS-----DF---CRGLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC--------GGGEEEH-----HH---HHHHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc--------CCeEEcc-----HH---HHHHhcCcccchhhHHHHHHHHHH
Confidence 6899999999999999999999999999764 1111211 11 1267777743110 0011111111
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH---
Q 001270 600 HARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSA--- 676 (1111)
Q Consensus 600 ~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~--- 676 (1111)
.. +.....|.....+... ..||||||||+|||+|+.+|++|+|||||++||+.
T Consensus 65 -----------------~~-~~~~~~g~~~~~~~~~------~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 65 -----------------IV-SKRLQLGKLTVVDATN------VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp -----------------HH-HHHHHTTCCEEEESCC------CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred -----------------HH-HHHHhCCCeEEEECCC------CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 11 1122346555444332 26999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCccH
Q 001270 677 -------------SSQLLLRALRREALEGVNICLVVHQPSY 704 (1111)
Q Consensus 677 -------------s~~~Il~~L~~la~~G~TVIivtHq~~~ 704 (1111)
....+++.|++++++|.|+|++||+++.
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~ 161 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEE 161 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHH
Confidence 5688999999887779999999999864
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.87 E-value=2.1e-25 Score=258.53 Aligned_cols=170 Identities=14% Similarity=0.183 Sum_probs=134.4
Q ss_pred ceeEeeeEEEEeCCe--------------------EEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCccccc
Q 001270 516 KHLLRCVTGKIRPGR--------------------ITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYK 575 (1111)
Q Consensus 516 k~IL~~VS~~I~~Ge--------------------ivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r 575 (1111)
+.+|++||++|++|+ ++||+||||||||||+|+|+|+.. +.+|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC--------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc----e
Confidence 468999999999999 999999999999999999999765 57899999997542 1
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH--HHHHHHH
Q 001270 576 KIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGG--QRKRVHV 653 (1111)
Q Consensus 576 ~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGG--QrQRVaI 653 (1111)
.++++|++ .++++|+.||+.++.. ...++++++.+++.+.. ..+ . |||| ||||+.|
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~~-~~~-----~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEYD-FFI-----I-ISATRFKKNDIDI 167 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGCS-EEE-----E-EESSCCCHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCccC-CeE-----E-eCCCCccHHHHHH
Confidence 27899985 5678899998765421 11357888999987652 222 1 8999 9999999
Q ss_pred HHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CEEEEEecCccH-HHHHhcCeE
Q 001270 654 GLEMVM----------EPSLLLLDEPTSGLDSASSQLLLRALRREA-----LEG----VNICLVVHQPSY-ALFRMFDDL 713 (1111)
Q Consensus 654 ArALl~----------~P~lLLLDEPTSGLD~~s~~~Il~~L~~la-----~~G----~TVIivtHq~~~-~i~~~~D~v 713 (1111)
|++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|+++. .+.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999884 332 678889998763 133455544
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.87 E-value=9.5e-26 Score=236.75 Aligned_cols=183 Identities=15% Similarity=0.096 Sum_probs=121.1
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEE 595 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 595 (1111)
..+++| .+|++||+++|+||||||||||+|+|+|++. ...+.+.+.+.+.. ...++.++|+||++.+++.+|+.|
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcC
Confidence 457777 6899999999999999999999999999763 22222222221111 123567999999988888888888
Q ss_pred HHHHHHHhhc---cccchHHHHHHHHHHH------HHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001270 596 NLWFHARCRL---SAHLAKADKVLVIERV------IDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLL 666 (1111)
Q Consensus 596 nL~f~a~~~~---~~~~~~~~~~~~v~~v------L~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLL 666 (1111)
++.+...... .......+..+++++. ++.+|+.+.+++++.. || +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEA-----VT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTS-----EE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCc-----EE-----------EEEECCCHHHH
Confidence 7643211100 0122333334445554 5556666656655543 77 89999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCc
Q 001270 667 DEPTSGL----DSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGG 720 (1111)
Q Consensus 667 DEPTSGL----D~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG 720 (1111)
||||+|| |+..+..+.+.++++.+ .|.|||++|||++. +.+++|++++|.+.|
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLES-ACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHH-HHHHHHHHHC-----
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHH-HHHHHHHHHHhccCC
Confidence 9999998 78899999999999975 58999999999975 568999999986544
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.86 E-value=6.7e-23 Score=211.99 Aligned_cols=138 Identities=13% Similarity=0.106 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC-cc--cccccEEEEccCCCCCCCCCHHHHHHHHHHhhccc
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP-IH--SYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSA 607 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~-~~--~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~ 607 (1111)
.++|+||||||||||+++|+|++. |.++|.+.. .. ..++.+||++|+. ++.+++ + ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~----- 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SS----- 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EE-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hh-----
Confidence 589999999999999999999652 344454321 11 3467899999986 222322 0 00
Q ss_pred cchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHH
Q 001270 608 HLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE-----MVMEPSLLLLDE--PTSGLDSASSQL 680 (1111)
Q Consensus 608 ~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA-----Ll~~P~lLLLDE--PTSGLD~~s~~~ 680 (1111)
.. +.-.+..++++. .||||||||++||++ |+.+|++||||| ||++||+.....
T Consensus 62 -~~--------------~~~~~~~~~~~~-----~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 62 -KF--------------FTSKKLVGSYGV-----NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp -TT--------------CCCSSEETTEEE-----CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred -hc--------------CCcccccccccc-----CcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 00 000123344444 499999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEec---CccHHHHHhcCe
Q 001270 681 LLRALRREALEGVNICLVVH---QPSYALFRMFDD 712 (1111)
Q Consensus 681 Il~~L~~la~~G~TVIivtH---q~~~~i~~~~D~ 712 (1111)
+.+.|++ .+.|+|+++| +.. .+..++|+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r 152 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL 152 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc
Confidence 9888865 4778999986 544 34567776
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.84 E-value=1e-25 Score=251.69 Aligned_cols=169 Identities=17% Similarity=0.229 Sum_probs=131.0
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFV 581 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV 581 (1111)
|+++||++.|. +.+|++||++|++|++++|+||||||||||+++|+|++ +|+| ++||
T Consensus 102 i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I---------------~~~v 158 (305)
T 2v9p_A 102 FNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV---------------LSFA 158 (305)
T ss_dssp HHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE---------------ECGG
T ss_pred EEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE---------------EEEe
Confidence 67889999884 57999999999999999999999999999999999965 5887 4577
Q ss_pred ccCCCCCCCCCHHH-HHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 582 PQDDIVHGNLTVEE-NLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 582 ~Qd~~l~~~LTV~E-nL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
+|++.++. .|++| ||.+.. .... .+.+.++.+ |.+..+ +..|||||||| ||||+.+
T Consensus 159 ~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~ 215 (305)
T 2v9p_A 159 NHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKA 215 (305)
T ss_dssp GTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECC
T ss_pred cCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCC
Confidence 88888776 47886 776631 1111 245566653 433333 23599999999 9999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHHHhC
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYFAGL 738 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f~~~ 738 (1111)
|+||| ||+||+.++..|.. ++|+++. ++.+|++ +|.+ |++++.|+.+++...|..+
T Consensus 216 p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~--~~~aD~i-vl~~-G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 216 PPLLV----TSNIDVQAEDRYLY--------------LHSRVQT--FRFEQPC-TDES-GEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp CCEEE----EESSCSTTCGGGGG--------------GTTTEEE--EECCCCC-CCC----CCCCCCHHHHHHHHHHS
T ss_pred CCEEE----ECCCCHHHHHHHHH--------------HhCCHHH--HHhCCEE-EEeC-CEEEEeCCHHHHHHHHHHH
Confidence 99999 99999999888852 1898874 4789999 8875 5889999999986666543
No 74
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.83 E-value=3.2e-23 Score=227.91 Aligned_cols=148 Identities=21% Similarity=0.205 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccch
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLA 610 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~ 610 (1111)
.++|+||||||||||+|+|+|+.. +.+|+|.++|+++.....++.+||++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~-- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC-- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH--
Confidence 479999999999999999999764 5789999999877544556789999999999999999999998754321110
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001270 611 KADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL 690 (1111)
Q Consensus 611 ~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~ 690 (1111)
. +.+.++++ ....+..+++ |||||||||+|||+++. ++||||||.|||+.. .+.++++.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~~~-----LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLKEE-----VNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHHHH-----SCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhHHh-----cCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 0 11233332 2334444444 99999999999999886 999999999999987 455666665
Q ss_pred CCCEEEEEecCcc
Q 001270 691 EGVNICLVVHQPS 703 (1111)
Q Consensus 691 ~G~TVIivtHq~~ 703 (1111)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999999754
No 75
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.83 E-value=3.7e-22 Score=222.87 Aligned_cols=173 Identities=17% Similarity=0.155 Sum_probs=131.3
Q ss_pred EeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc-------cc--cccEEEEccCCC-CC
Q 001270 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH-------SY--KKIIGFVPQDDI-VH 588 (1111)
Q Consensus 519 L~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~-------~~--r~~IgyV~Qd~~-l~ 588 (1111)
++++|+++++|++++|+||||||||||++.|+|++. +.+|+|.++|.+.... .+ +..|+||+|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 346788899999999999999999999999999764 4689999999875321 12 346999999988 88
Q ss_pred CCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCC--EEEE
Q 001270 589 GNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPS--LLLL 666 (1111)
Q Consensus 589 ~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~--lLLL 666 (1111)
+.+||+||+.++.... .. ..+++.+|+.+..++++++ || |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~e-----LS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEE-----LI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHHH-----HH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHHH-----HH---HHHHHHHHhhccCCCeeEEEE
Confidence 8899999998864211 00 1245677888777777765 99 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCcc--------HHHHHhcCeEEEEeCCc
Q 001270 667 DEPTSGLDSASSQLLLRALRREA-LEGVNICLVVHQPS--------YALFRMFDDLVLLAKGG 720 (1111)
Q Consensus 667 DEPTSGLD~~s~~~Il~~L~~la-~~G~TVIivtHq~~--------~~i~~~~D~vilL~~GG 720 (1111)
| ||+|||+..+ ++++. ..|.|+|++||... .......+.+.++..|.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge 283 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 283 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCC
Confidence 9 9999998854 24454 35899999999322 12234456778887653
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.81 E-value=1e-19 Score=226.53 Aligned_cols=109 Identities=29% Similarity=0.438 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 001270 616 LVIERVIDTLGLQTV-RDSLVGTVEKRGISGGQRKRVHVGLEMVMEP--SLLLLDEPTSGLDSASSQLLLRALRREALEG 692 (1111)
Q Consensus 616 ~~v~~vL~~LGL~~~-~d~~vg~~~~rgLSGGQrQRVaIArALl~~P--~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G 692 (1111)
.+++ .+..+||... .++.+.+ |||||||||+||++|+.+| .||||||||++||+.....++++|++|++.|
T Consensus 358 ~rl~-~L~~vGL~~l~l~r~~~t-----LSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G 431 (842)
T 2vf7_A 358 KRLD-VLLHLGLGYLGLDRSTPT-----LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGG 431 (842)
T ss_dssp HHHH-HHHHTTCTTSBTTCBGGG-----SCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHH-HHHhCCCCcCCccCCcCc-----CCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 4454 5778999865 6777765 9999999999999999999 5999999999999999999999999998889
Q ss_pred CEEEEEecCccHHHHHhcCeEEEEe-----CCcEEEEecCHhhHH
Q 001270 693 VNICLVVHQPSYALFRMFDDLVLLA-----KGGLTVYHGSVKKVE 732 (1111)
Q Consensus 693 ~TVIivtHq~~~~i~~~~D~vilL~-----~GG~iv~~G~~~~l~ 732 (1111)
.|||+|+|+++ +.+.+|++++|. +||++++.|+++++.
T Consensus 432 ~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 432 NSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp CEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred CEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 99999999986 347899999994 578899999998763
No 77
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.81 E-value=6e-24 Score=225.76 Aligned_cols=154 Identities=12% Similarity=0.099 Sum_probs=100.7
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc----ccccccEEEEccCCCCCCCCC
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI----HSYKKIIGFVPQDDIVHGNLT 592 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~----~~~r~~IgyV~Qd~~l~~~LT 592 (1111)
.-|+||||+|++|++++|+||||||||||+++|+|+. + |+|.+ |.+... ...++.++|++|++.+|+.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~---p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF---P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS---T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC---C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 4699999999999999999999999999999999965 3 88999 765321 124568999999987665432
Q ss_pred -HHHHHHHHHHhhc-cccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH-----HHHHhhCCCEEE
Q 001270 593 -VEENLWFHARCRL-SAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHV-----GLEMVMEPSLLL 665 (1111)
Q Consensus 593 -V~EnL~f~a~~~~-~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaI-----ArALl~~P~lLL 665 (1111)
+.+++.+. .... ....+. ..++++++...+. ..+ ..|||||+||++| +++|+.+|++++
T Consensus 85 ~~~~~l~~~-~~~~~~~g~~~----~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLEYD-NYANNFYGTLK----SEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEEEE-EETTEEEEEEH----HHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhhhh-hcccccCCCcH----HHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 11121110 0000 011122 1355666653321 111 2489999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh
Q 001270 666 LDEPTSGLDSASSQLLLRALRREAL 690 (1111)
Q Consensus 666 LDEPTSGLD~~s~~~Il~~L~~la~ 690 (1111)
|||||+++|..+...|.+.|.++..
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988887643
No 78
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.80 E-value=2.2e-21 Score=221.39 Aligned_cols=171 Identities=17% Similarity=0.164 Sum_probs=131.7
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc-------cc--cccEEEEccCCC-CCC
Q 001270 520 RCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH-------SY--KKIIGFVPQDDI-VHG 589 (1111)
Q Consensus 520 ~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~-------~~--r~~IgyV~Qd~~-l~~ 589 (1111)
.++|+++++|++++|+||||||||||++.|+|++. +.+|+|.++|.+.... .+ +..|+|++|++. +++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46788899999999999999999999999999764 4689999999875321 12 356999999988 888
Q ss_pred CCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCC--EEEEe
Q 001270 590 NLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPS--LLLLD 667 (1111)
Q Consensus 590 ~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~--lLLLD 667 (1111)
.+||+||+.++.... .. ..+++.+|+.+..++++.+ || |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~e-----LS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEE-----LI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHHH-----HH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHHH-----HH---HHHHHHHHHHhcCCCceEEEEc
Confidence 899999998864311 00 1245667888777777665 99 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCcc--------HHHHHhcCeEEEEeCC
Q 001270 668 EPTSGLDSASSQLLLRALRREA-LEGVNICLVVHQPS--------YALFRMFDDLVLLAKG 719 (1111)
Q Consensus 668 EPTSGLD~~s~~~Il~~L~~la-~~G~TVIivtHq~~--------~~i~~~~D~vilL~~G 719 (1111)
||+|||+.++. +++. ..|.|+|++||... .......+.+.++..|
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~G 339 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVG 339 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCC
Confidence 99999988652 3444 35899999999321 1223445677777665
No 79
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.80 E-value=4.1e-19 Score=200.72 Aligned_cols=75 Identities=32% Similarity=0.417 Sum_probs=67.7
Q ss_pred CCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEE
Q 001270 641 RGISGGQRK------RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLV 714 (1111)
Q Consensus 641 rgLSGGQrQ------RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vi 714 (1111)
..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++..+|.|||+|||+++ +...+|+++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~~ 324 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHVI 324 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEEE
Confidence 459999999 677788888899999999999999999999999999998777899999999965 458999999
Q ss_pred EEe
Q 001270 715 LLA 717 (1111)
Q Consensus 715 lL~ 717 (1111)
+|.
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 80
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.80 E-value=2.1e-22 Score=235.45 Aligned_cols=190 Identities=12% Similarity=0.086 Sum_probs=148.3
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCe---eCCc-------
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGK---NEPI------- 571 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~---~~~~------- 571 (1111)
++++++++.|.. +..+|+++ |.|.+|++++|+|||||||||||++|+|+.. +++|.|.++|+ ++..
T Consensus 132 l~~~~v~~~~~t-g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 132 LQRTPIEHVLDT-GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp TTSCCCCSBCCC-SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred eEEeccceecCC-CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhcc
Confidence 567899998842 35799999 9999999999999999999999999999764 57899999997 3311
Q ss_pred -ccccccEEEEccC-CCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 001270 572 -HSYKKIIGFVPQD-DIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRK 649 (1111)
Q Consensus 572 -~~~r~~IgyV~Qd-~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQ 649 (1111)
..+++.++||+|+ ..+++.+||.+|+.+.+...... . + ......+. + ..||+|| |
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~---~------~v~~~ld~-l-----~~lS~g~-q 264 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------G---Q------HVLLIMDS-L-----TRYAMAQ-R 264 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------T---C------EEEEEEEC-H-----HHHHHHH-H
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------C---C------CHHHHHHh-H-----HHHHHHH-H
Confidence 2356789999995 55667889999998865432100 0 0 00111222 1 2489999 9
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCccHHHHHhcCeEEEEeCCc
Q 001270 650 RVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL---E-GV-----NICLVVHQPSYALFRMFDDLVLLAKGG 720 (1111)
Q Consensus 650 RVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~---~-G~-----TVIivtHq~~~~i~~~~D~vilL~~GG 720 (1111)
||+|| +.+|++ |+|||+.+...+.++|.++.+ + |. ||++++||++ . ..+|++++|.+ |
T Consensus 265 rvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~--~iad~v~~l~d-G 331 (438)
T 2dpy_A 265 EIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-D--PIADSARAILD-G 331 (438)
T ss_dssp HHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-C--HHHHHHHHHSS-E
T ss_pred HHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-c--hhhceEEEEeC-c
Confidence 99999 889988 999999999999999998865 3 64 9999999998 2 57899999976 6
Q ss_pred EEEEecCHhhH
Q 001270 721 LTVYHGSVKKV 731 (1111)
Q Consensus 721 ~iv~~G~~~~l 731 (1111)
+++..|++.++
T Consensus 332 ~Ivl~~~~~~~ 342 (438)
T 2dpy_A 332 HIVLSRRLAEA 342 (438)
T ss_dssp EEEECHHHHHT
T ss_pred EEEEeCCHHHc
Confidence 88888877654
No 81
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.79 E-value=6.1e-19 Score=201.34 Aligned_cols=81 Identities=21% Similarity=0.096 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCe
Q 001270 642 GISGGQRKRVHVGLEMV---------MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDD 712 (1111)
Q Consensus 642 gLSGGQrQRVaIArALl---------~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~ 712 (1111)
.|||||||||+||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. +. .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~----~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP----GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT----TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc----cCCE
Confidence 59999999999999999 8999999999999999999999999998763 689999994 42 7899
Q ss_pred EEEEeCCcEEEEecCHhhH
Q 001270 713 LVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 713 vilL~~GG~iv~~G~~~~l 731 (1111)
+++|.+ |+++..|+++++
T Consensus 337 i~~l~~-G~i~~~g~~~~~ 354 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEEMQ 354 (359)
T ss_dssp EEEEET-TEEEECCCTTTS
T ss_pred EEEEEC-CEEEecCCHHHH
Confidence 999986 578899988765
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.79 E-value=4.9e-21 Score=216.21 Aligned_cols=131 Identities=19% Similarity=0.200 Sum_probs=106.7
Q ss_pred eEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC-CcccccccEEEEccCCCCCCCCCHHHH
Q 001270 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE-PIHSYKKIIGFVPQDDIVHGNLTVEEN 596 (1111)
Q Consensus 518 IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~-~~~~~r~~IgyV~Qd~~l~~~LTV~En 596 (1111)
+++++++.+++|++++|+||||||||||+++|+|++. +.+|.|.++|.+. .....++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 7899999999999999999999999999999999765 5789999998642 1112334455443
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 001270 597 LWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSA 676 (1111)
Q Consensus 597 L~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~ 676 (1111)
+ |||+||++||+||..+|++|+|||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 0 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCc
Q 001270 677 SSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGG 720 (1111)
Q Consensus 677 s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG 720 (1111)
.++.+.|+.+...+.|+|+++|+++ ..+.+|++++|.+|+
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2356777776544458999999988 357899999998763
No 83
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.78 E-value=2.2e-20 Score=205.98 Aligned_cols=182 Identities=16% Similarity=0.124 Sum_probs=120.8
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCcee-EEEECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG-LILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEE 595 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG-~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 595 (1111)
.+|+++++.+++|++++|+||||||||||++.|+|... +.+| .|.+.+.+.+...+++++..+.|... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 47999999999999999999999999999999999653 3446 66554433333334444444444432 23334
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---
Q 001270 596 NLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQ-RKRVHVGLEMVMEPSLLLLDEPTS--- 671 (1111)
Q Consensus 596 nL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQ-rQRVaIArALl~~P~lLLLDEPTS--- 671 (1111)
++..+. +...+..+.++++++..++. .+..+ ..+|.+| +||+. |+++..+|++||+||||+
T Consensus 97 ~l~~~~-------~~~~~~~~~~~~~l~~~~l~--i~~~~-----~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-------IENGKFDQWFDELFGNDTFH--LYDSF-----AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-------HHHTHHHHHHHHHHSSSCEE--EECCC-----CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-------CCHHHHHHHHHHHhccCCEE--EECCC-----CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 444321 11112222344444322321 11111 2389998 66776 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCc--cH-------------------HHHHhcCeEEEEeCC
Q 001270 672 G---LDS-ASSQLLLRALRREALE-GVNICLVVHQP--SY-------------------ALFRMFDDLVLLAKG 719 (1111)
Q Consensus 672 G---LD~-~s~~~Il~~L~~la~~-G~TVIivtHq~--~~-------------------~i~~~~D~vilL~~G 719 (1111)
+ +|. .....+++.|++++++ |.|||+++|+. +. .+.+.+|++++|.+|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 555 6678899999999765 99999999996 21 456789999999875
No 84
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.77 E-value=7.3e-19 Score=209.33 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=69.9
Q ss_pred CCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe
Q 001270 641 RGI-SGGQRKRVHVGLEMVMEP--SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 641 rgL-SGGQrQRVaIArALl~~P--~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~ 717 (1111)
..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |.|||+|||++.. ...+|++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~--~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQI--AARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHH--HHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEEe
Confidence 457 999999999999999999 99999999999999999999999999987 8999999999864 36799999997
Q ss_pred CC
Q 001270 718 KG 719 (1111)
Q Consensus 718 ~G 719 (1111)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 85
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.77 E-value=2.3e-20 Score=200.89 Aligned_cols=180 Identities=12% Similarity=0.049 Sum_probs=109.7
Q ss_pred CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCH
Q 001270 514 KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTV 593 (1111)
Q Consensus 514 ~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV 593 (1111)
+++.+|+||||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567999999999999999999999999999999999953 333333 2467899999995 7778999
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001270 594 EENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGL 673 (1111)
Q Consensus 594 ~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGL 673 (1111)
.|++.+........ .+.....+.+.+.++.+ .+..+..+. .||+||+||+.+ ++++.+|+++|||||...+
T Consensus 76 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~l--~~~~~~~~~-----~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFD-HPDAFDNDLMHRTLKNI--VEGKTVEVP-----TYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTT-SGGGBCHHHHHHHHHHH--HTTCCEEEC-----CEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCC-CcccccHHHHHHHHHHH--HCCCCeecc-----cccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 99998754321100 01110112234444443 233344444 499999999988 6888999999999999888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHH
Q 001270 674 DSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYF 735 (1111)
Q Consensus 674 D~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f 735 (1111)
|.. +.++ .+.+|++++|+.......+.+++ .+ |+ +.+++.+.+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~-G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RR-GR-----DLEQILTQY 189 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C---------CHHHHHHHH
T ss_pred cHH--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---Hc-CC-----CHHHHHHHH
Confidence 864 2222 37899999997432222233333 33 43 566665544
No 86
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=1.1e-18 Score=219.00 Aligned_cols=153 Identities=23% Similarity=0.378 Sum_probs=117.6
Q ss_pred CceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhcccc---ch--HHHHHHHHHHHHHHcCCCcc-
Q 001270 557 KATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAH---LA--KADKVLVIERVIDTLGLQTV- 630 (1111)
Q Consensus 557 ~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~---~~--~~~~~~~v~~vL~~LGL~~~- 630 (1111)
+..|+|+++|+++.. +..+||.|++.|.....+... .. .........+.+..+||...
T Consensus 394 ~~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~ 457 (916)
T 3pih_A 394 REALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLT 457 (916)
T ss_dssp TTGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCB
T ss_pred hHhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcccc
Confidence 578999999987421 234577777776443221110 00 00111234567788999765
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHH
Q 001270 631 RDSLVGTVEKRGISGGQRKRVHVGLEMVMEPS--LLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFR 708 (1111)
Q Consensus 631 ~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~--lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~ 708 (1111)
.++.+++ |||||||||+|||+|+.+|+ +|||||||+|||+.....++++|++++++|.|||+|+||++. ..
T Consensus 458 l~r~~~~-----LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~--~~ 530 (916)
T 3pih_A 458 LSRSATT-----LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV--IR 530 (916)
T ss_dssp TTSBGGG-----CCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHH--HH
T ss_pred ccCCccc-----CCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--HH
Confidence 5777765 99999999999999999887 999999999999999999999999998889999999999864 36
Q ss_pred hcCeEEEEe-----CCcEEEEecCHhhHH
Q 001270 709 MFDDLVLLA-----KGGLTVYHGSVKKVE 732 (1111)
Q Consensus 709 ~~D~vilL~-----~GG~iv~~G~~~~l~ 732 (1111)
.+|++++|. ++|++++.|+++++.
T Consensus 531 ~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 531 NADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp TCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred hCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 699999993 568999999998875
No 87
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.76 E-value=3e-21 Score=216.51 Aligned_cols=123 Identities=14% Similarity=0.070 Sum_probs=96.2
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhc
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRL 605 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~ 605 (1111)
+++|+++||+||||||||||+++|+|++.+ ..|. +.+++|+|++.+++. |++||+.+....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~-- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--WDHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHRK-- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--STTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTCT--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--cCCC--------------CeEEEEecCccCCcc-cHHHHHHHHHhc--
Confidence 679999999999999999999999997643 3231 469999999998888 999998653211
Q ss_pred cccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001270 606 SAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDS 675 (1111)
Q Consensus 606 ~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~ 675 (1111)
+.+.....+.+.++++.++ .+..+..+.. |||||+|||++|++++.+|+|||||||++.+|+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~-----lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACAPV-----YSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEEEE-----EETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCccc-----CChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1122222235677888887 4444455543 999999999999999999999999999999986
No 88
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.75 E-value=1.2e-19 Score=230.84 Aligned_cols=172 Identities=17% Similarity=0.142 Sum_probs=118.8
Q ss_pred EEEEEe-----EEEEEcCCcceeEeeeEEEEeC-------CeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCee
Q 001270 501 EVSFKD-----LTLTLKGKNKHLLRCVTGKIRP-------GRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN 568 (1111)
Q Consensus 501 ~L~~~n-----Ls~~y~~~~k~IL~~VS~~I~~-------GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~ 568 (1111)
.|+++| |++.|. +++.|++||+|.+++ |++++|+||||||||||||+| |+...
T Consensus 750 ~l~i~~~rHP~l~~~~~-~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------- 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF-GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------- 814 (1022)
T ss_dssp CEEEEEECCCC-------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------
T ss_pred eEEEEeccccEEEEEec-CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------
Confidence 388899 998884 345799999999987 999999999999999999999 86421
Q ss_pred CCcccccccEE-EEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 001270 569 EPIHSYKKIIG-FVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQ 647 (1111)
Q Consensus 569 ~~~~~~r~~Ig-yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQ 647 (1111)
..++| ||||+.. .+||.|+|.. .+|+.+...... ..+|+|+
T Consensus 815 ------~aqiG~~Vpq~~~---~l~v~d~I~~------------------------rig~~d~~~~~~-----stf~~em 856 (1022)
T 2o8b_B 815 ------MAQMGCYVPAEVC---RLTPIDRVFT------------------------RLGASDRIMSGE-----STFFVEL 856 (1022)
T ss_dssp ------HHTTTCCEESSEE---EECCCSBEEE------------------------ECC--------------CHHHHHH
T ss_pred ------HhheeEEeccCcC---CCCHHHHHHH------------------------HcCCHHHHhhch-----hhhHHHH
Confidence 23456 9999863 4566665521 012221111111 2367777
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCeEEEEeCCcEEE--
Q 001270 648 RKRVHVGLEMVMEPSLLLLDEPTSGLDSASS-QLLLRALRREALE-GVNICLVVHQPSYALFRMFDDLVLLAKGGLTV-- 723 (1111)
Q Consensus 648 rQRVaIArALl~~P~lLLLDEPTSGLD~~s~-~~Il~~L~~la~~-G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv-- 723 (1111)
++ +++|++++.+|+|+||||||+|+|+... ..++++|+.++++ |.++|++||+++.. ...+|++.++. |++.
T Consensus 857 ~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~-~~~~d~~~v~~--g~~~~~ 932 (1022)
T 2o8b_B 857 SE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLV-EDYSQNVAVRL--GHMACM 932 (1022)
T ss_dssp HH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHH-HHTSSCSSEEE--EEEEEC
T ss_pred HH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HHhCCcceeec--CeEEEE
Confidence 65 9999999999999999999999999985 5578889998876 99999999998753 46788887764 4665
Q ss_pred EecCHh
Q 001270 724 YHGSVK 729 (1111)
Q Consensus 724 ~~G~~~ 729 (1111)
+.|+.+
T Consensus 933 ~~~~~~ 938 (1022)
T 2o8b_B 933 VENECE 938 (1022)
T ss_dssp ------
T ss_pred EecCcc
Confidence 445543
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.74 E-value=1.8e-21 Score=232.18 Aligned_cols=168 Identities=18% Similarity=0.166 Sum_probs=120.1
Q ss_pred cceeEeeeEE-EEeCCeEEEEEcCCCCCHHHHHHH--HhcCCCCCCceeEEEECCeeCCc--ccccccEEEEccCCCCCC
Q 001270 515 NKHLLRCVTG-KIRPGRITAVMGPSGAGKTTFLSA--LAGKAIACKATGLILINGKNEPI--HSYKKIIGFVPQDDIVHG 589 (1111)
Q Consensus 515 ~k~IL~~VS~-~I~~GeivaIiGpSGSGKSTLLki--LaGl~~~~~~sG~I~inG~~~~~--~~~r~~IgyV~Qd~~l~~ 589 (1111)
...+|++|++ .|++|++++|+||||||||||+++ ++|+.. +.+|.|+++|++... ...++.+||++|++...+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~--~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 4578999999 999999999999999999999999 689764 468999999986321 223467899999854321
Q ss_pred CCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001270 590 NLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEP 669 (1111)
Q Consensus 590 ~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEP 669 (1111)
+ +.+ ... .. .. ...++++.++|.+..++.+.. |||| +|++++||||
T Consensus 102 ~------l~~---~~~-~~-~~-----~~~~~l~~~~l~~~~~~~~~~-----LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 102 K------LFI---LDA-SP-DP-----EGQEVVGGFDLSALIERINYA-----IQKY-------------RARRVSIDSV 147 (525)
T ss_dssp S------EEE---EEC-CC-CS-----SCCSCCSSHHHHHHHHHHHHH-----HHHH-------------TCSEEEEECS
T ss_pred c------EEE---Eec-Cc-cc-----chhhhhcccCHHHHHHHHHHH-----HHHc-------------CCCEEEECCH
Confidence 1 100 000 00 00 011122333333333443332 6665 5889999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHH--------HHHhcCeEEEEeC
Q 001270 670 TS-----GLDSASSQLLLRALRREALEGVNICLVVHQPSYA--------LFRMFDDLVLLAK 718 (1111)
Q Consensus 670 TS-----GLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~--------i~~~~D~vilL~~ 718 (1111)
|+ +||+..+..+++++++++++|+|||+++|+++.. ...++|++++|.+
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 98 4699999999999999988899999999999753 3345999999987
No 90
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.73 E-value=7.8e-18 Score=210.46 Aligned_cols=135 Identities=24% Similarity=0.369 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHHHhhcccc---ch---HHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhCC-
Q 001270 590 NLTVEENLWFHARCRLSAH---LA---KADKVLVIERVIDTLGLQTV-RDSLVGTVEKRGISGGQRKRVHVGLEMVMEP- 661 (1111)
Q Consensus 590 ~LTV~EnL~f~a~~~~~~~---~~---~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~rgLSGGQrQRVaIArALl~~P- 661 (1111)
.+||.|++.|...+.++.. .. ..+...++ +.++.+||... .++.+++ |||||||||+||++|..+|
T Consensus 451 ~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~t-----LSGGEkQRV~LA~aL~~~~~ 524 (972)
T 2r6f_A 451 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLT 524 (972)
T ss_dssp TSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGG-----CCHHHHHHHHHHHHHTTCCC
T ss_pred hCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcccc-----CCHHHHHHHHHHHHHhhCCC
Confidence 5899999999766543221 00 01233344 45788999865 6887776 9999999999999999985
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe-----CCcEEEEecCHhhHH
Q 001270 662 -SLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA-----KGGLTVYHGSVKKVE 732 (1111)
Q Consensus 662 -~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~-----~GG~iv~~G~~~~l~ 732 (1111)
+||||||||+|||+.....++++|++|++.|.|||+|+|+++. .+.+|++++|. +||++++.|+++++.
T Consensus 525 ~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~--i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 525 GVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT--MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH--HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 9999999999999999999999999998889999999999863 46899999994 578999999998763
No 91
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.73 E-value=2.3e-19 Score=190.61 Aligned_cols=164 Identities=13% Similarity=0.098 Sum_probs=106.8
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHh--cCCCCCCceeEEEECCeeCCc--ccccccEEEEccCCCCCCCCCHHHHHHHH
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALA--GKAIACKATGLILINGKNEPI--HSYKKIIGFVPQDDIVHGNLTVEENLWFH 600 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLa--Gl~~~~~~sG~I~inG~~~~~--~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~ 600 (1111)
.|++|++++|+||||||||||+++|+ |+.. +.+|.+.+++..... ....+.+||++|+....+.+++.+++...
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSV 103 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-----
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccc
Confidence 69999999999999999999999999 5422 345777777754211 12235578888876555555555543221
Q ss_pred HHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC-----H
Q 001270 601 ARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLD-----S 675 (1111)
Q Consensus 601 a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD-----~ 675 (1111)
... ... ..... . ...+.++..+...+..-..+|++|+|||||++|| +
T Consensus 104 ~~~------~~~----~~~~~-------------~-----~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~ 155 (251)
T 2ehv_A 104 VGL------PSE----EKFVL-------------E-----DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEER 155 (251)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGG
T ss_pred ccc------ccc----cceec-------------c-----CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHH
Confidence 100 000 00000 0 0134455555555555568999999999999998 6
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCccHHH--------HHhc-CeEEEEeC
Q 001270 676 ASSQLLLRALRREALEGVNICLVVHQPSYAL--------FRMF-DDLVLLAK 718 (1111)
Q Consensus 676 ~s~~~Il~~L~~la~~G~TVIivtHq~~~~i--------~~~~-D~vilL~~ 718 (1111)
..+..+.++++.++++|+|||+++|+++... ..++ |++++|.+
T Consensus 156 ~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 156 KIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp GHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 7777799999988878999999999987541 4678 99999963
No 92
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.72 E-value=1e-19 Score=206.84 Aligned_cols=191 Identities=15% Similarity=0.147 Sum_probs=135.0
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC----------c
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP----------I 571 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~----------~ 571 (1111)
++.+++++.|.. +..+|+++ |.|.+||+++|+||||||||||+++|+|+.. ++.|.|.+.|++.. .
T Consensus 46 i~~~~l~~~~~t-g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 46 LLRQVIDQPFIL-GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp TTCCCCCSEECC-SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred eeecccceecCC-CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccHHHHHHHHHhhhh
Confidence 466788888852 45799999 9999999999999999999999999999764 57899999986411 0
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 001270 572 HSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 572 ~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
..+++.+.+++|.+. ...+.+.-... ...+.+.....|. +... ... .+..||+|| |||
T Consensus 122 ~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~~-~vl~-~ld--~~~~lS~g~-r~v 179 (347)
T 2obl_A 122 STLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQGK-NVLL-MMD--SVTRYARAA-RDV 179 (347)
T ss_dssp HHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTTC-EEEE-EEE--THHHHHHHH-HHH
T ss_pred hhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhccc-cHHH-HHh--hHHHHHHHH-HHH
Confidence 123456888887542 23333221110 0001111111111 1100 000 123489999 899
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCccHHHHHhcCeEEEEeCCcEEEE
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL--EGV-----NICLVVHQPSYALFRMFDDLVLLAKGGLTVY 724 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~--~G~-----TVIivtHq~~~~i~~~~D~vilL~~GG~iv~ 724 (1111)
++| +.+|++ |+|||+.....+.++++++.+ +|. ||++++||++. ..+|++++|.+ |+++.
T Consensus 180 ~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~---~i~d~v~~i~d-G~Ivl 246 (347)
T 2obl_A 180 GLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND---PIGDEVRSILD-GHIVL 246 (347)
T ss_dssp HHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC---HHHHHHHHHCS-EEEEB
T ss_pred HHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC---hhhhheEEeeC-cEEEE
Confidence 999 688887 999999999999999999864 477 89999999982 57999999976 68888
Q ss_pred ecCHhhH
Q 001270 725 HGSVKKV 731 (1111)
Q Consensus 725 ~G~~~~l 731 (1111)
+|+..++
T Consensus 247 ~~~l~~~ 253 (347)
T 2obl_A 247 TRELAEE 253 (347)
T ss_dssp CHHHHTT
T ss_pred eCCHHHc
Confidence 8877654
No 93
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.71 E-value=9.2e-19 Score=183.67 Aligned_cols=152 Identities=22% Similarity=0.212 Sum_probs=98.8
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----ceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHH
Q 001270 524 GKIRPGRITAVMGPSGAGKTTFLSALAGKAIACK-----ATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLW 598 (1111)
Q Consensus 524 ~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~-----~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~ 598 (1111)
+-|++|++++|+||||||||||+++|+|...+.+ ..|.|++++.... ..+.+++++|+..+++. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 3699999999999999999999999999544322 3347777765311 12345566665544433 4444432
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH-HHHHHHHHHHhh-------CCCEEEEeCCC
Q 001270 599 FHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQ-RKRVHVGLEMVM-------EPSLLLLDEPT 670 (1111)
Q Consensus 599 f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQ-rQRVaIArALl~-------~P~lLLLDEPT 670 (1111)
+.. ..++++ ++++..+++++. +|++|+|||||
T Consensus 96 ~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VAR----------------------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EEE----------------------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EEe----------------------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 211 122222 233444555544 99999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCccH---HHHHhcCeEEEEeCC
Q 001270 671 SGLDSA-------S-----SQLLLRALRREAL-EGVNICLVVHQPSY---ALFRMFDDLVLLAKG 719 (1111)
Q Consensus 671 SGLD~~-------s-----~~~Il~~L~~la~-~G~TVIivtHq~~~---~i~~~~D~vilL~~G 719 (1111)
++||+. . ...+++.|+++++ .|.|||+++|..+. .+...+|++++|.++
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 2 2367888888765 49999999995442 245778999999764
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.71 E-value=9e-18 Score=200.34 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=117.3
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q 001270 523 TGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHAR 602 (1111)
Q Consensus 523 S~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~ 602 (1111)
++.|++|++++|+|+||||||||++.|+|...+ .|+ +.+.|++|++. .++.+++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 458999999999999999999999999996432 232 22566777642 12333221
Q ss_pred hhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----H
Q 001270 603 CRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSA-----S 677 (1111)
Q Consensus 603 ~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~-----s 677 (1111)
+. ++. +++ +...|+....+..+. .|||||+||+++|+++..+|++||+| ||++||.. .
T Consensus 330 -~~--g~~-------~~~-~~~~g~~~~~~~~p~-----~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMD-------FEE-MERQNLLKIVCAYPE-----SAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCC-------HHH-HHHTTSEEECCCCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCC-------HHH-HHhCCCEEEEEeccc-----cCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 111 112 234577666666554 49999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCc----------cHHHHHhcCeEEEEeCC
Q 001270 678 SQLLLRALRREALEGVNICLVVHQP----------SYALFRMFDDLVLLAKG 719 (1111)
Q Consensus 678 ~~~Il~~L~~la~~G~TVIivtHq~----------~~~i~~~~D~vilL~~G 719 (1111)
+..+.++++.+++.|.|||+++|+. . .+..++|++++|.+|
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEEE
Confidence 9999999999988899999999998 3 345689999999764
No 95
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.71 E-value=1.4e-17 Score=208.91 Aligned_cols=137 Identities=22% Similarity=0.312 Sum_probs=109.8
Q ss_pred CCCCHHHHHHHHHHhhcccc---ch---HHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhhC-
Q 001270 589 GNLTVEENLWFHARCRLSAH---LA---KADKVLVIERVIDTLGLQTV-RDSLVGTVEKRGISGGQRKRVHVGLEMVME- 660 (1111)
Q Consensus 589 ~~LTV~EnL~f~a~~~~~~~---~~---~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~~rgLSGGQrQRVaIArALl~~- 660 (1111)
..+||.|++.|...+.++.. +. ..+...++ +.++.+||... .++.+++ |||||||||+||++|..+
T Consensus 467 ~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~t-----LSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 467 CELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAAT-----LSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp SHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGG-----CCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCccc-----CCHHHHHHHHHHHHHhhCC
Confidence 35799999988544432221 00 01223344 35788899865 6777766 999999999999999999
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe-----CCcEEEEecCHhhHHH
Q 001270 661 -PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA-----KGGLTVYHGSVKKVEE 733 (1111)
Q Consensus 661 -P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~-----~GG~iv~~G~~~~l~~ 733 (1111)
|+||||||||+|||+.....++++|++|++.|.|||+|+|+++. .+.+|++++|. +||++++.|+++++.+
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~--i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDT--IEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHH--HHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 59999999999999999999999999999899999999999864 46899999994 5789999999988753
No 96
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.69 E-value=1.8e-19 Score=200.89 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=86.4
Q ss_pred EeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC-CCCCCceeEEEECCeeCCcccccccEEEEcc
Q 001270 505 KDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGK-AIACKATGLILINGKNEPIHSYKKIIGFVPQ 583 (1111)
Q Consensus 505 ~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl-~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Q 583 (1111)
+||++.| +++.++++++|+| +|+|+||+|||||++.|.|. .. +.+| |.++|.+.......+.+++++|
T Consensus 2 ~~l~~~~--~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQV--HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIE 70 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC
T ss_pred CCCcceE--CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEec
Confidence 4678888 4578999999998 99999999999999999996 33 5678 8888876533222356899999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCE
Q 001270 584 DDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSL 663 (1111)
Q Consensus 584 d~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~l 663 (1111)
++.+...+||.|++.++......... ...++.+ .+..+.++. ++|||||||+.+||+++ +
T Consensus 71 ~~~~~~~ltv~Dt~g~~~~~~~~e~~-----~~l~~~l------~~~~~~~~~-----~~sgg~rqrv~~ara~~----l 130 (301)
T 2qnr_A 71 ERGVKLRLTVVDTPGYGDAINCRDCF-----KTIISYI------DEQFERYLH-----DESGLNRRHIIDNRVHC----C 130 (301)
T ss_dssp ---CCEEEEEEEEC-----------C-----TTHHHHH------HHHHHHHHH-----HHTSSCCTTCCCCCCCE----E
T ss_pred CCCcccCcchhhhhhhhhhcCcHHHH-----HHHHHHH------HHHHHHHHH-----HhCHHhhhhhhhhhhhh----e
Confidence 98888889999998875432100000 0111111 122334443 49999999999999886 9
Q ss_pred EEEeCCCCC-CCHHHHHHHHHHHHHHHhC-CCEEEEEecCcc
Q 001270 664 LLLDEPTSG-LDSASSQLLLRALRREALE-GVNICLVVHQPS 703 (1111)
Q Consensus 664 LLLDEPTSG-LD~~s~~~Il~~L~~la~~-G~TVIivtHq~~ 703 (1111)
|++||||++ ||+... +.++++..+ +.++|++.||+.
T Consensus 131 l~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 131 FYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999999984 999873 556665543 778888899974
No 97
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.69 E-value=5.1e-20 Score=192.33 Aligned_cols=146 Identities=21% Similarity=0.226 Sum_probs=114.0
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCC--CCCCHHHHHHHHHHh
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVH--GNLTVEENLWFHARC 603 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~--~~LTV~EnL~f~a~~ 603 (1111)
.++|+++||+||||||||||+++|+|++. + .++||+|++.++ ..+|+.+++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~--~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG--E-------------------RVALLPMDHYYKDLGHLPLEERLRVNYD- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG--G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT-
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC--C-------------------CeEEEecCccccCcccccHHHhcCCCCC-
Confidence 57899999999999999999999999542 1 589999998876 56899998765321
Q ss_pred hccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------
Q 001270 604 RLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQ----RKRVHVGLEMVMEPSLLLLDEPTSG------- 672 (1111)
Q Consensus 604 ~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQ----rQRVaIArALl~~P~lLLLDEPTSG------- 672 (1111)
.+.... .+.+.+.++.+++.+..+.++. .+|+|| +||+++|++++.+|.++++||||++
T Consensus 61 -~~~~~~----~~~~~~~l~~~~~~~~~~~~~~-----~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 61 -HPDAFD----LALYLEHAQALLRGLPVEMPVY-----DFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp -SGGGBC----HHHHHHHHHHHHTTCCEEECCE-----ETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred -Chhhhh----HHHHHHHHHHHHcCCCcCCCcc-----cCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111111 2345677788888766665544 389996 4789999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCcc
Q 001270 673 LDSASSQLLLRALRRE-ALEGVNICLVVHQPS 703 (1111)
Q Consensus 673 LD~~s~~~Il~~L~~l-a~~G~TVIivtHq~~ 703 (1111)
||+.....+.+.+++. .++|.|++.++|+..
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999876 456999999999853
No 98
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.69 E-value=3.8e-17 Score=205.87 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=109.0
Q ss_pred cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 001270 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVE 594 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 594 (1111)
.+.+++||++.+++|++++|+||||||||||||+|++.... ...| +|||++....+.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~-aq~G------------------~~vpa~~~~~~~---- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM-AQIG------------------CFVPCESAEVSI---- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH-HHHT------------------CCBSEEEEEEEC----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH-HhcC------------------CccccccccchH----
Confidence 35689999999999999999999999999999999432100 0011 111111000000
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCC
Q 001270 595 ENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM--VMEPSLLLLDEPTSG 672 (1111)
Q Consensus 595 EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL--l~~P~lLLLDEPTSG 672 (1111)
+++++..+|+.+ .. .+++|+|+++++.+|++| +.+|+++||||||+|
T Consensus 705 -----------------------~d~i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~G 753 (934)
T 3thx_A 705 -----------------------VDCILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753 (934)
T ss_dssp -----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCS
T ss_pred -----------------------HHHHHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCC
Confidence 000111122221 11 134889999888888888 999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhH
Q 001270 673 LDSASSQLL-LRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 673 LD~~s~~~I-l~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l 731 (1111)
||+.....+ ..+++.+++ .|.++|++||+.+. .+++|++..+.+ |++.+.++.+++
T Consensus 754 lD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el--~~lad~~~~v~n-g~v~~~~~~~~l 811 (934)
T 3thx_A 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFHEL--TALANQIPTVNN-LHVTALTTEETL 811 (934)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGG--GGGGGTCTTEEE-EEEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHH--HHHhcccceeEe-eEEEEEecCCcE
Confidence 999998888 666777776 49999999999764 478999988876 577777766543
No 99
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.68 E-value=5.9e-17 Score=188.46 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe
Q 001270 642 GISGGQRKRVHVGLEMV----MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 642 gLSGGQrQRVaIArALl----~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~ 717 (1111)
.||||||||++||++|+ .+|++|||||||++||+..+..+.+.|+++..+|.++|++||++. +...+|+++.|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~--~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHH--HHHhCCEEEEEE
Confidence 49999999999999999 589999999999999999999999999988656889999999964 457899999986
Q ss_pred C
Q 001270 718 K 718 (1111)
Q Consensus 718 ~ 718 (1111)
.
T Consensus 411 ~ 411 (430)
T 1w1w_A 411 R 411 (430)
T ss_dssp E
T ss_pred E
Confidence 3
No 100
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.68 E-value=5.3e-18 Score=185.55 Aligned_cols=132 Identities=16% Similarity=0.208 Sum_probs=98.1
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-eeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKA-TGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEE 595 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~-sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E 595 (1111)
.+|+++| +++|++++|+||||||||||+++|+|++. +. +|+|.++|.++ +|++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i---------~~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPI---------EYVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSC---------CSCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcc---------eeecCCccee-------
Confidence 4899999 99999999999999999999999999764 45 89999988653 2333321100
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001270 596 NLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDS 675 (1111)
Q Consensus 596 nL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~ 675 (1111)
... ..+|++. ..+ |++||++|..+|++|+||||| |+
T Consensus 75 ---------v~q---------------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 ---------VNQ---------------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp ---------EEE---------------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred ---------eeH---------------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 000 0123321 113 899999999999999999999 98
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeC
Q 001270 676 ASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAK 718 (1111)
Q Consensus 676 ~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~ 718 (1111)
.+...++ +. +..|.+|++++|+.+ ....+|+++.|..
T Consensus 111 ~~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 111 ETVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 8865543 33 456999999999987 3478899888753
No 101
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.67 E-value=1.3e-16 Score=160.69 Aligned_cols=76 Identities=30% Similarity=0.378 Sum_probs=69.0
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeE
Q 001270 640 KRGISGGQRKRVHVG------LEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDL 713 (1111)
Q Consensus 640 ~rgLSGGQrQRVaIA------rALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~v 713 (1111)
+..|||||||||+|| |+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||++. +.+.+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH--HHHhCCEE
Confidence 345999999999876 8999999999999999999999999999999998777899999999984 35889999
Q ss_pred EEEe
Q 001270 714 VLLA 717 (1111)
Q Consensus 714 ilL~ 717 (1111)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
No 102
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.67 E-value=4.7e-18 Score=213.54 Aligned_cols=144 Identities=16% Similarity=0.174 Sum_probs=98.8
Q ss_pred cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 001270 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVE 594 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 594 (1111)
++.|++||+|++++|++++|+||||||||||||+|+++... ...|. .++.. ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-aq~g~------~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-AQIGS------YVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-HHHTC------CBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-hhcCc------cccch--hhhhhHH---HHHHHhCChH
Confidence 46799999999999999999999999999999999874210 01110 00000 0112211 1112111111
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 001270 595 ENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLD 674 (1111)
Q Consensus 595 EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD 674 (1111)
+ ...... ..+|+||+|++.|+++ +.+|+|+||||||+|||
T Consensus 727 d----------------------------------~l~~~~-----stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 D----------------------------------NIYKGR-----STFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred H----------------------------------HHHHhH-----HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 1 111112 2489999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCccHHHHHhcCe
Q 001270 675 SASSQLLL-RALRREAL-EGVNICLVVHQPSYALFRMFDD 712 (1111)
Q Consensus 675 ~~s~~~Il-~~L~~la~-~G~TVIivtHq~~~~i~~~~D~ 712 (1111)
+.....+. .+++.+++ .|.|||++||+++.. +++|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~--~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC--ELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG--GHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH--HHHhh
Confidence 99999987 67777765 599999999998643 55654
No 103
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.66 E-value=4.1e-18 Score=190.44 Aligned_cols=149 Identities=16% Similarity=0.158 Sum_probs=107.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc-------cc--cccEEEEccCCCCCCCCCHHHHHH
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH-------SY--KKIIGFVPQDDIVHGNLTVEENLW 598 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~-------~~--r~~IgyV~Qd~~l~~~LTV~EnL~ 598 (1111)
+|++++|+||||||||||++.|+|++. +.+|+|.++|.+.... .+ +..++||+|++.+++.+||+||+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 789999999999999999999999765 5789999999875311 11 346999999998888889999998
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 001270 599 FHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASS 678 (1111)
Q Consensus 599 f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~ 678 (1111)
++..... . ..+++..|+.+..+.. ++..++||++|||+|+.+|+.++| .||+.+.
T Consensus 179 ~~~~~~~--d----------~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARGY--D----------LLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHTC--S----------EEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCCC--C----------EEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 6532100 0 0122334543332222 355669999999999999994444 4454445
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCcc
Q 001270 679 QLLLRALRREALE-GVNICLVVHQPS 703 (1111)
Q Consensus 679 ~~Il~~L~~la~~-G~TVIivtHq~~ 703 (1111)
..+++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 5566777777654 899999999843
No 104
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.66 E-value=1.3e-17 Score=206.56 Aligned_cols=141 Identities=22% Similarity=0.230 Sum_probs=104.9
Q ss_pred EEEEeEEEEEcC---CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccE
Q 001270 502 VSFKDLTLTLKG---KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~---~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~I 578 (1111)
|++++. +++- +++.+++||||+ |++++|+||||||||||||+|+|+... +..|.+. . ..+..+
T Consensus 551 i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v------p--a~~~~i 616 (765)
T 1ewq_A 551 LQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV------P--AEEAHL 616 (765)
T ss_dssp EEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB------S--SSEEEE
T ss_pred EEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee------e--hhccce
Confidence 555555 2222 345789999999 999999999999999999999996421 2345431 1 123568
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH-
Q 001270 579 GFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM- 657 (1111)
Q Consensus 579 gyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL- 657 (1111)
|+++| +++.+++.||+.. ++|+|+++++.++++|
T Consensus 617 ~~v~~---i~~~~~~~d~l~~------------------------------------------g~S~~~~e~~~la~il~ 651 (765)
T 1ewq_A 617 PLFDG---IYTRIGASDDLAG------------------------------------------GKSTFMVEMEEVALILK 651 (765)
T ss_dssp CCCSE---EEEECCC------------------------------------------------CCSHHHHHHHHHHHHHH
T ss_pred eeHHH---hhccCCHHHHHHh------------------------------------------cccHHHHHHHHHHHHHH
Confidence 88877 4555666665421 3799999999999999
Q ss_pred -hhCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCccH
Q 001270 658 -VMEPSLLLLDEP---TSGLDSASS-QLLLRALRREALEGVNICLVVHQPSY 704 (1111)
Q Consensus 658 -l~~P~lLLLDEP---TSGLD~~s~-~~Il~~L~~la~~G~TVIivtHq~~~ 704 (1111)
+.+|+++||||| |++||..+. ..+++.|.+ .|.|+|++||+++.
T Consensus 652 ~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l 700 (765)
T 1ewq_A 652 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFEL 700 (765)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHH
T ss_pred hccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHH
Confidence 999999999999 999999875 568887765 48899999999753
No 105
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.65 E-value=5.8e-19 Score=214.27 Aligned_cols=191 Identities=16% Similarity=0.223 Sum_probs=115.3
Q ss_pred EEEEEeEEEEEcCCcceeEeee----------EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCV----------TGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP 570 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~V----------S~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~ 570 (1111)
.++++||+..|..+.+.+|+.+ +++++. +||+|||||||||||++|+|+..+ ..+|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEE
Confidence 4678899998854334445444 355554 999999999999999999998542 26899999998741
Q ss_pred ------cccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 001270 571 ------IHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGIS 644 (1111)
Q Consensus 571 ------~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLS 644 (1111)
...+++.|||++|++.+++.+||+||+.+........ ..++ |
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~----------------~~~~----------------s 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE----------------GMGI----------------S 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS----------------SSCC----------------C
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC----------------cccc----------------c
Confidence 2356788999999999999999999998754321000 0011 1
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCccH------HHHHhc
Q 001270 645 GGQRKRVHVGLEMVMEPSLLLLDEP------TSGLDSASSQLLLRALRREALE--GVNICLVVHQPSY------ALFRMF 710 (1111)
Q Consensus 645 GGQrQRVaIArALl~~P~lLLLDEP------TSGLD~~s~~~Il~~L~~la~~--G~TVIivtHq~~~------~i~~~~ 710 (1111)
++++.++.+....|+++|+||| |+|||+..+..+.++++++..+ +.++++++|+.+. .+.+..
T Consensus 134 ---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v 210 (608)
T 3szr_A 134 ---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV 210 (608)
T ss_dssp ---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH
T ss_pred ---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH
Confidence 0112222233458999999999 9999999999999999997543 6788899999762 222332
Q ss_pred -----CeEEEEeCCcEEEEecCHhhH
Q 001270 711 -----DDLVLLAKGGLTVYHGSVKKV 731 (1111)
Q Consensus 711 -----D~vilL~~GG~iv~~G~~~~l 731 (1111)
..++++.++ ..+..|+.+++
T Consensus 211 ~~~g~rtI~VlTK~-Dlv~~g~~~~~ 235 (608)
T 3szr_A 211 DPEGDRTIGILTKP-DLVDKGTEDKV 235 (608)
T ss_dssp CSSCCSEEEEEECG-GGSSSSSTTCC
T ss_pred hhcCCceEEEecch-hhcCcccHHHH
Confidence 235555553 34555654443
No 106
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=6.4e-18 Score=174.99 Aligned_cols=176 Identities=15% Similarity=0.032 Sum_probs=97.9
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC---CCCceeEEEECCeeCCcccccccE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAI---ACKATGLILINGKNEPIHSYKKII 578 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~---~~~~sG~I~inG~~~~~~~~r~~I 578 (1111)
|+++||++.|+ ..+|++ +.+.+|..++|+|+||||||||++.|+|... ..++.|.+.+.+.-. +...+
T Consensus 4 l~~~~~~~~~~---~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~----~~~~~ 74 (210)
T 1pui_A 4 LNYQQTHFVMS---APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE----VADGK 74 (210)
T ss_dssp -------CEEE---ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE----EETTE
T ss_pred hhhhhhhheee---cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE----ecCCE
Confidence 68899999994 357888 8899999999999999999999999999651 124556654422100 00011
Q ss_pred EEEccCCCCC----CCCC---HHHHHHHHHHh-hc-c---------ccchHHHHHHHHHHHHHHcCCCcc-ccccccCcc
Q 001270 579 GFVPQDDIVH----GNLT---VEENLWFHARC-RL-S---------AHLAKADKVLVIERVIDTLGLQTV-RDSLVGTVE 639 (1111)
Q Consensus 579 gyV~Qd~~l~----~~LT---V~EnL~f~a~~-~~-~---------~~~~~~~~~~~v~~vL~~LGL~~~-~d~~vg~~~ 639 (1111)
-++ +.+.+. +... .+..+...... +. . ..... ....+.++++..++... ...++.
T Consensus 75 ~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~nK~D--- 148 (210)
T 1pui_A 75 RLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLVLLTKAD--- 148 (210)
T ss_dssp EEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEEEEECGG---
T ss_pred EEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEEEEeccc---
Confidence 111 111100 0000 11112111110 00 0 00111 11234455666676543 233333
Q ss_pred CCCCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 001270 640 KRGISGGQRKR-VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVN 694 (1111)
Q Consensus 640 ~rgLSGGQrQR-VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~T 694 (1111)
.+|+||||| +.++++++.+|+++++|||||++|.....++++.|.++..+|.|
T Consensus 149 --~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 149 --KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp --GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred --CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 389999999 89999999999999999999999999999999999998766644
No 107
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.60 E-value=2.3e-16 Score=196.47 Aligned_cols=154 Identities=17% Similarity=0.103 Sum_probs=105.6
Q ss_pred cceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 001270 515 NKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVE 594 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~ 594 (1111)
++.+++|++++ ++|++++|+||||||||||||+|+|+... ... |..++. .+..+++++| ++..+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~-~q~------G~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM-AYI------GSYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH-HTT------TCCBSS--SEEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH-Hhc------Ccccch--hcccceeHHH---HHhhCCHH
Confidence 45789999999 99999999999999999999999996321 111 211111 1235677665 45556666
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 001270 595 ENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLD 674 (1111)
Q Consensus 595 EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD 674 (1111)
||+..+ + ..+|+|+++ ++.+..++.+|+++|||||++|+|
T Consensus 661 d~l~~~--------------------------~-------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG--------------------------R-------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh--------------------------h-------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCC
Confidence 655321 0 125666654 555556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEE
Q 001270 675 SASSQLL-LRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVY 724 (1111)
Q Consensus 675 ~~s~~~I-l~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~ 724 (1111)
+.....+ ..+++.+.+ .|.++|++||+++. ..++|++..+.+ +.+.+
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el--~~l~d~~~~v~n-~~~~~ 749 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFEL--TQLPEKMEGVAN-VHLDA 749 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG--GGHHHHSTTEEE-EEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHHH--HHHhhhhhceEE-EEEEE
Confidence 9877775 678888877 49999999999864 367887666654 34443
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.59 E-value=9.7e-16 Score=167.79 Aligned_cols=151 Identities=21% Similarity=0.244 Sum_probs=104.4
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHhh
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCR 604 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~ 604 (1111)
.+++|++++|+||||||||||++.|++.. ..|.+ +.|.+.. ....+.|+..+.... .+.+.+. ..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~----~~g~~-~~g~~~~---~~~~v~~~~~e~~~~---~~~~r~~---~~- 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI----AGGPD-LLEVGEL---PTGPVIYLPAEDPPT---AIHHRLH---AL- 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH----HTCCC-TTCCCCC---CCCCEEEEESSSCHH---HHHHHHH---HH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH----hcCCC-cCCCccC---CCccEEEEECCCCHH---HHHHHHH---HH-
Confidence 38899999999999999999999999843 24655 3354321 134577876654220 1111211 11
Q ss_pred ccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---H
Q 001270 605 LSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS--GLDSASS---Q 679 (1111)
Q Consensus 605 ~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTS--GLD~~s~---~ 679 (1111)
...... ..++++++.+++.+..+..+. .||+||+|++ ++++.+|++||+||||+ ++|.... .
T Consensus 91 -g~~~~~----~~~~~~~~~l~l~~~~~~~~~-----~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 91 -GAHLSA----EERQAVADGLLIQPLIGSLPN-----IMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp -HTTSCH----HHHHHHHHHEEECCCTTSCCC-----TTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred -HhhcCh----hhhhhccCceEEeecCCCCcc-----cCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 111111 124567888888776665554 4999998865 68889999999999999 9997544 7
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCcc
Q 001270 680 LLLRALRREAL-EGVNICLVVHQPS 703 (1111)
Q Consensus 680 ~Il~~L~~la~-~G~TVIivtHq~~ 703 (1111)
.+++.|+++++ .|.|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88889998864 5999999999865
No 109
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.59 E-value=9.1e-17 Score=182.65 Aligned_cols=143 Identities=23% Similarity=0.204 Sum_probs=101.4
Q ss_pred eEeee-EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCce----eE-EEECCeeCCcccccccEEEEccCCCCCCCC
Q 001270 518 LLRCV-TGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKAT----GL-ILINGKNEPIHSYKKIIGFVPQDDIVHGNL 591 (1111)
Q Consensus 518 IL~~V-S~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~s----G~-I~inG~~~~~~~~r~~IgyV~Qd~~l~~~L 591 (1111)
.|+.+ ++.|++|++++|+||||||||||++.|++.....+.+ |. |++++++.. .++++++++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 45555 5789999999999999999999999999975322344 67 889886531 24567778887655433
Q ss_pred CHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh-------hCCCEE
Q 001270 592 TVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV-------MEPSLL 664 (1111)
Q Consensus 592 TV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl-------~~P~lL 664 (1111)
++.||+.+... . -|++|+|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~~~------~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVARA------F---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEEEC------C---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEEec------C---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 44444432110 0 1445666666666666 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCcc
Q 001270 665 LLDEPTSGLDSAS------------SQLLLRALRREAL-EGVNICLVVHQPS 703 (1111)
Q Consensus 665 LLDEPTSGLD~~s------------~~~Il~~L~~la~-~G~TVIivtHq~~ 703 (1111)
|+||||++||+.. ...+++.|+++++ .|.|||+++|...
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 9999999999852 3566677777765 4899999999865
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.59 E-value=2e-16 Score=165.42 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=108.5
Q ss_pred eeEeeeEE-EEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCccccc---ccEEEEccCCCCCCCCC
Q 001270 517 HLLRCVTG-KIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYK---KIIGFVPQDDIVHGNLT 592 (1111)
Q Consensus 517 ~IL~~VS~-~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r---~~IgyV~Qd~~l~~~LT 592 (1111)
..|+++.+ .+++|++++|+||||||||||++.|++... +.+|.|.+.+.+.....+. ..+++.+|+.... .+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 45777775 799999999999999999999999998543 3456666654332211111 1122222211000 000
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCC
Q 001270 593 VEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPS--LLLLDEPT 670 (1111)
Q Consensus 593 V~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~--lLLLDEPT 670 (1111)
.. .. +...++ ...+ ....|.++.++...+.+...+|+ +|++||||
T Consensus 87 -----------~~-~~------------~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 87 -----------II-DA------------LMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp -----------EE-EC------------CC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred -----------EE-ec------------cccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 00 00 000001 0011 11259999999888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCcc-------HHHHHhcCeEEEEeCC
Q 001270 671 SGL--DSASSQLLLRALRREAL-EGVNICLVVHQPS-------YALFRMFDDLVLLAKG 719 (1111)
Q Consensus 671 SGL--D~~s~~~Il~~L~~la~-~G~TVIivtHq~~-------~~i~~~~D~vilL~~G 719 (1111)
+++ |+.....+++.|+++++ .|.|||+++|+.. ..+.+.+|++++|.+.
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 888 99999999999999864 5999999999983 2356789999999753
No 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.59 E-value=3.2e-17 Score=190.54 Aligned_cols=164 Identities=18% Similarity=0.150 Sum_probs=99.3
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.|.++||++.| +.+.+++|++|+| +|+|+||+|||||+++|+|...+.+..|.+.+++.. ....+.+++
T Consensus 11 ~l~~~~l~~~y--~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~ 79 (418)
T 2qag_C 11 YVGFANLPNQV--YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKV 79 (418)
T ss_dssp ----CCCCCCT--TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEEC
T ss_pred cEEEEecceeE--CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEE
Confidence 37889999988 4567999999998 999999999999999999976532222322222211 112356899
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 581 VPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
++|++.++..+||.||+.++.... .......+.+.++. .++.+++||++|||+++.+
T Consensus 80 v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~~-----------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 80 LIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYIDS-----------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp C------CEEEEEEECC-----------------CHHHHHHHHH-----------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhccC
Confidence 999988888899999998864321 00000111112211 2567888999999999999
Q ss_pred CC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 001270 661 PS---LLLLDEPT-SGLDSASSQLLLRALRREALEGVNICLVVHQPS 703 (1111)
Q Consensus 661 P~---lLLLDEPT-SGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~ 703 (1111)
|+ +|++|||| .|||+... +.++++. .+.+||+|+|..+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred CCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 99 99999999 69998863 3444443 4788998888754
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.57 E-value=4.9e-16 Score=177.23 Aligned_cols=146 Identities=18% Similarity=0.178 Sum_probs=98.8
Q ss_pred EeEEEEEcCCcceeEeeeEE-------EEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-eeEEEECCeeCCcccccc
Q 001270 505 KDLTLTLKGKNKHLLRCVTG-------KIRPGRITAVMGPSGAGKTTFLSALAGKAIACKA-TGLILINGKNEPIHSYKK 576 (1111)
Q Consensus 505 ~nLs~~y~~~~k~IL~~VS~-------~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~-sG~I~inG~~~~~~~~r~ 576 (1111)
..+++++.......|+++.+ .+.+|++++|+|||||||||||++|+|++. +. +|.|...+.+... ..+.
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i~t~ed~~e~-~~~~ 168 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHILTIEDPIEF-VHES 168 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEEEEEESSCCS-CCCC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc--CCCCcEEEEccCcHHh-hhhc
Confidence 34555554333344556554 678999999999999999999999999764 33 4666544433221 1233
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 001270 577 IIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
..++++|.......+ +-.+ +||++
T Consensus 169 ~~~~v~q~~~~~~~~----------------------------------------------------~~~~----~La~a 192 (356)
T 3jvv_A 169 KKCLVNQREVHRDTL----------------------------------------------------GFSE----ALRSA 192 (356)
T ss_dssp SSSEEEEEEBTTTBS----------------------------------------------------CHHH----HHHHH
T ss_pred cccceeeeeeccccC----------------------------------------------------CHHH----HHHHH
Confidence 345555543221111 1111 89999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeC
Q 001270 657 MVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAK 718 (1111)
Q Consensus 657 Ll~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~ 718 (1111)
|.++|++|++|||| |..+ ++.+.+++..|.|||+++|+.+.. ..+||++.|..
T Consensus 193 L~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~~--~~~dRli~l~~ 245 (356)
T 3jvv_A 193 LREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTSAA--KTIDRVVDVFP 245 (356)
T ss_dssp TTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSSHH--HHHHHHHHTSC
T ss_pred hhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccChHH--HHHHHHhhhcC
Confidence 99999999999999 6555 344445566799999999998843 78999988854
No 113
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.56 E-value=1.7e-17 Score=173.36 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=99.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC-cccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccc
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP-IHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSA 607 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~-~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~ 607 (1111)
|++++|+||||||||||+++|+|++. .+| |.++|.+.. ...+++.+||++|+. .... +++. +..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l~---~~~--- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPLS---RVG--- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEEE---ECC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehhh---ccc---
Confidence 78999999999999999999999653 568 999887653 234678899999975 2211 1110 000
Q ss_pred cchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 001270 608 HLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRV-HVGL---EMVMEPSLLLLDE--PTSGLDSASSQL 680 (1111)
Q Consensus 608 ~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRV-aIAr---ALl~~P~lLLLDE--PTSGLD~~s~~~ 680 (1111)
++..+ ..+..++. ....+|+|||+++ ++++ |++.+|+|||||| ||..+|.....
T Consensus 66 -----------------~~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~- 126 (189)
T 2i3b_A 66 -----------------LEPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQ- 126 (189)
T ss_dssp -----------------CCCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHH-
T ss_pred -----------------ccCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHH-
Confidence 01111 01113332 1234899999998 4455 6899999999999 89999987544
Q ss_pred HHHHHHHHHhCCCEEEE--E--ecCccHHHHHhcCeEEEEeCCcEEEE
Q 001270 681 LLRALRREALEGVNICL--V--VHQPSYALFRMFDDLVLLAKGGLTVY 724 (1111)
Q Consensus 681 Il~~L~~la~~G~TVIi--v--tHq~~~~i~~~~D~vilL~~GG~iv~ 724 (1111)
.|+++.+...++|+ + +|+.+. .+.|++..+.+ |+++.
T Consensus 127 ---~l~~~l~~~~~~ilgti~vsh~~~~---~~vd~i~~~~~-~~i~~ 167 (189)
T 2i3b_A 127 ---AVRQTLSTPGTIILGTIPVPKGKPL---ALVEEIRNRKD-VKVFN 167 (189)
T ss_dssp ---HHHHHHHCSSCCEEEECCCCCSSCC---TTHHHHHTTCC-SEEEE
T ss_pred ---HHHHHHhCCCcEEEEEeecCCCCch---HHHHHHeecCC-cEEEE
Confidence 44444444555554 2 388641 34566555543 45544
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.52 E-value=6e-16 Score=165.12 Aligned_cols=150 Identities=16% Similarity=0.149 Sum_probs=100.2
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCH----HHHHH
Q 001270 523 TGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTV----EENLW 598 (1111)
Q Consensus 523 S~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV----~EnL~ 598 (1111)
.-..++|++++|+||||||||||+++|+|+.++....|.|.+.+++... ..++.++|+||++..|+.+++ .||+.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 3457899999999999999999999999976422378999998875432 235679999998765544444 22222
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 001270 599 FHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASS 678 (1111)
Q Consensus 599 f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~ 678 (1111)
+... .. +.| +++ +.+++..++++||| ||+.++
T Consensus 89 ~~~~-------------------------------~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VFGN-------------------------------YY------GTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ETTE-------------------------------EE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHhc-------------------------------cC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 1100 00 111 111 33445567999999 999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHHH
Q 001270 679 QLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYFA 736 (1111)
Q Consensus 679 ~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f~ 736 (1111)
..+.+.+. ++.||++++|+++... + |+ +.+ | .++++++...+.
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~~~l~-~---Rl--~~r-G----~~~~e~i~~rl~ 163 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSKIELD-R---RL--RGR-G----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSHHHHH-H---HH--HTT-S----CSCHHHHHHHHH
T ss_pred HHHHHHcc----CCEEEEEECCCHHHHH-H---HH--HHc-C----CCCHHHHHHHHH
Confidence 99998876 5899999999987432 2 32 444 4 577777776654
No 115
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=4.8e-16 Score=180.68 Aligned_cols=186 Identities=12% Similarity=0.090 Sum_probs=117.8
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKIRPGRI--TAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIG 579 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I~~Gei--vaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Ig 579 (1111)
|++++ ++.| ++.. |++||+++++|++ ++|+||||||||||+|+|+|+.. .|.-.. . ......++.++
T Consensus 17 l~~~~-~~~y--~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~~-~--~~~~~~~~~i~ 85 (427)
T 2qag_B 17 VPLAG-HVGF--DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPAT-H--TQPGVQLQSNT 85 (427)
T ss_dssp CCCCC-CC-C--C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------CCSSCEEEEEE
T ss_pred EEEee-EEEE--CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcCC-C--CCccceEeeEE
Confidence 44455 6667 3345 9999999999999 99999999999999999999642 122110 0 11122345799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhccccchH--HHHHHHHHHHHHHc-CCC----cccccccc------CccCCCCCHH
Q 001270 580 FVPQDDIVHGNLTVEENLWFHARCRLSAHLAK--ADKVLVIERVIDTL-GLQ----TVRDSLVG------TVEKRGISGG 646 (1111)
Q Consensus 580 yV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~~--~~~~~~v~~vL~~L-GL~----~~~d~~vg------~~~~rgLSGG 646 (1111)
|++|++.+++.+||.||+.|+........... .......++++... ++. ...|..+. ....++|+-.
T Consensus 86 ~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~ 165 (427)
T 2qag_B 86 YDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSL 165 (427)
T ss_dssp EEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHH
T ss_pred EEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHH
Confidence 99999988888999999987643110000000 11123345555554 543 11232211 0012357766
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 001270 647 QRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRR-EALEGVNICLVVHQ 701 (1111)
Q Consensus 647 QrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~-la~~G~TVIivtHq 701 (1111)
+ +.|+++|..+.+||++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 166 D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 166 D---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp H---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred H---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 6 7899999999999999999999999999999999986 66779999988764
No 116
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.48 E-value=1.6e-13 Score=141.60 Aligned_cols=92 Identities=15% Similarity=0.270 Sum_probs=73.7
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEE
Q 001270 641 RGISGGQRKRVHVGLEMVM----EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLL 716 (1111)
Q Consensus 641 rgLSGGQrQRVaIArALl~----~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL 716 (1111)
..||||||||++||++|+. .|+++||||||+|||+.++..+.+.|+++.+ +.++|++||+.. +...+|+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~--~~~~ad~i~~v 139 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDV--MMANADKIIGV 139 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHH--HHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHH--HHHhCCEEEEE
Confidence 4599999999999999985 4699999999999999999999999998764 568999999964 46899999865
Q ss_pred e--CCcEEEEecCHhhHHHHH
Q 001270 717 A--KGGLTVYHGSVKKVEEYF 735 (1111)
Q Consensus 717 ~--~GG~iv~~G~~~~l~~~f 735 (1111)
. +|...+...+.++..+.+
T Consensus 140 ~~~~g~s~~~~~~~~~~~~~~ 160 (173)
T 3kta_B 140 SMRDGVSKVVSLSLEKAMKIL 160 (173)
T ss_dssp EEETTEEEEEECCHHHHHHHH
T ss_pred EecCCEEEEEEEEcHHHHHHH
Confidence 3 444445556655544433
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.47 E-value=2.8e-16 Score=161.06 Aligned_cols=140 Identities=15% Similarity=0.028 Sum_probs=91.3
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-ccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-HSYKKIIGFVPQDDIVHGNLTVEENLWFHARC 603 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~ 603 (1111)
.+++|++++|+||||||||||+++|+|. +..|.|.++|.+... ...++.++|++|+.. +.+||.||+.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc----cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 3789999999999999999999999995 357999999975321 112345788888654 457899998775432
Q ss_pred hccccchHHHHHHHHHHHHHHcCCCccc--cccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 001270 604 RLSAHLAKADKVLVIERVIDTLGLQTVR--DSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLL 681 (1111)
Q Consensus 604 ~~~~~~~~~~~~~~v~~vL~~LGL~~~~--d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~I 681 (1111)
....... ..++.++..+++.... +..+ ..+|+|++||+.++|++..+|+++ +|+.....+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~-----~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~ 140 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTALARPL-----HYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADL 140 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTTCSCE-----EEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhcCCCe-----EEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHH
Confidence 1100000 0001111111222111 1122 248999999999999999999886 688777766
Q ss_pred HHHHHHH
Q 001270 682 LRALRRE 688 (1111)
Q Consensus 682 l~~L~~l 688 (1111)
.+.++.+
T Consensus 141 ~~~~~~l 147 (191)
T 1zp6_A 141 HSQFADL 147 (191)
T ss_dssp HHHTTCC
T ss_pred HHHHhcc
Confidence 6665543
No 118
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.47 E-value=6.6e-14 Score=145.86 Aligned_cols=153 Identities=21% Similarity=0.176 Sum_probs=97.3
Q ss_pred eEeeeE-EEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHH
Q 001270 518 LLRCVT-GKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEEN 596 (1111)
Q Consensus 518 IL~~VS-~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~En 596 (1111)
.|+.+. +-+++|++++|+||||||||||++.|++ . ...+.++++.. .. .+. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~~~~v~~i~~~-----------------~~----~~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--SGKKVAYVDTE-----------------GG----FSP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--HCSEEEEEESS-----------------CC----CCH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--cCCcEEEEECC-----------------CC----CCH-HH
Confidence 355554 3689999999999999999999999998 2 12233333322 11 111 11
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH--HHHHHHHHHHHhhC-CCEEEEeCCCCCC
Q 001270 597 LWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGG--QRKRVHVGLEMVME-PSLLLLDEPTSGL 673 (1111)
Q Consensus 597 L~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGG--QrQRVaIArALl~~-P~lLLLDEPTSGL 673 (1111)
+.-... . ..... +++++.+. +.+ +|++ ++|+++.+++++.+ |+++|+||||+.+
T Consensus 62 ~~~~~~-~--~~~~~-------~~~~~~~~--------~~~-----~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQMAE-T--RGLNP-------EEALSRFI--------LFT-----PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHHH-T--TTCCH-------HHHHHHEE--------EEC-----CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHHH-h--cCCCh-------HHHhhcEE--------EEe-----cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110000 0 00110 11222221 111 4444 36788889999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CCEEEEEecCccH------------HHHHhcCeEEEEeCC
Q 001270 674 DSAS--------SQLLLRALRREALE-GVNICLVVHQPSY------------ALFRMFDDLVLLAKG 719 (1111)
Q Consensus 674 D~~s--------~~~Il~~L~~la~~-G~TVIivtHq~~~------------~i~~~~D~vilL~~G 719 (1111)
|+.. ...+++.|++++++ |.|||+++|.... .+...+|.+++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9743 34566668887754 8999999998651 355789999999754
No 119
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.45 E-value=1.7e-15 Score=172.86 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=100.4
Q ss_pred EeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC-CcccccccEEEEc-cCCCCCCCCCHHHH
Q 001270 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE-PIHSYKKIIGFVP-QDDIVHGNLTVEEN 596 (1111)
Q Consensus 519 L~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~-~~~~~r~~IgyV~-Qd~~l~~~LTV~En 596 (1111)
++++|+.+++|++++|+||||||||||+++|+|++. +.+|.|.++|... .....++.++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~--------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE--------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEESSSCCCCTTCSSEEEEECC--------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEECCccccCccccCCEEEEeecCcccc---------
Confidence 399999999999999999999999999999999765 5789999998542 2223567899998 65431
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 001270 597 LWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSA 676 (1111)
Q Consensus 597 L~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~ 676 (1111)
+++++..+|..|+.++..+|+.+++||++.
T Consensus 234 ---------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~----- 263 (361)
T 2gza_A 234 ---------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG----- 263 (361)
T ss_dssp --------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-----
T ss_pred ---------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-----
Confidence 012233456667777777899999999986
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCc
Q 001270 677 SSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGG 720 (1111)
Q Consensus 677 s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG 720 (1111)
.++.+.|+.+.....|++.++|..+ ....+||++.+..++
T Consensus 264 --~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 --GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp --THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred --HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 2455666666544457899999976 347889998887653
No 120
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.45 E-value=1.2e-16 Score=164.25 Aligned_cols=173 Identities=16% Similarity=0.152 Sum_probs=110.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhcccc
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAH 608 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~ 608 (1111)
|++++|+||||||||||+++|++ +.+|.|.++|.+... ...+++++|.....+.+|+++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~-----~~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA-----QLDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH-----HSSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc-----ccCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999999999998 246899999865321 1235777876644455688888876543211000
Q ss_pred chHHHHHHHHHHHHHHcCCCccccccccCccCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHH
Q 001270 609 LAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGI--SGGQRKRVHVGL------EMVMEPSLLLLDEPTSGLDSASSQL 680 (1111)
Q Consensus 609 ~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgL--SGGQrQRVaIAr------ALl~~P~lLLLDEPTSGLD~~s~~~ 680 (1111)
. ..+++.+. .......+ +.+ |+|++|++.++. +|+.+|+...+|| +||+.....
T Consensus 74 ~---------~~ild~~~-~~~~~~~~-----~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIA-FPDEAEAL-----AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCC-CHHHHHHH-----HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeecc-CHHHHHHH-----HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 00011000 00000000 124 888888888888 9999999888884 899988888
Q ss_pred HHHHHHHHHhCCCEEEEEecC-ccHHHHHhcCeEEEEeCCcEEEEecCHhhHH
Q 001270 681 LLRALRREALEGVNICLVVHQ-PSYALFRMFDDLVLLAKGGLTVYHGSVKKVE 732 (1111)
Q Consensus 681 Il~~L~~la~~G~TVIivtHq-~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~ 732 (1111)
.+.++.+...+.+||.++|. ++. +.+.+|+++ . .|+++..|+++-+.
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~~-~e~~~~~i~--~-~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPTN-LNDIVKNLK--T-NPRFIFCMAGDPLE 183 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGGG-HHHHHHHHH--H-CGGGSCC-------
T ss_pred -HHHHhhcCCCccEEEeCCCCChhh-HHHHHHHHh--h-CCcEEEeecCCchh
Confidence 88888776567899999998 764 457899988 4 56788888876553
No 121
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.45 E-value=6.7e-17 Score=181.27 Aligned_cols=156 Identities=13% Similarity=0.088 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC------CCceeEEEECCeeCCc------------------ccccccEEEE---c
Q 001270 530 RITAVMGPSGAGKTTFLSALAGKAIA------CKATGLILINGKNEPI------------------HSYKKIIGFV---P 582 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl~~~------~~~sG~I~inG~~~~~------------------~~~r~~IgyV---~ 582 (1111)
++++|+|+||||||||||.|.|.... .+..|+|.++|.++.. ..+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999996411 2578999999987532 1234568888 6
Q ss_pred cCCCCCCCCCHHHHHHHHHHhhccccc---hHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh
Q 001270 583 QDDIVHGNLTVEENLWFHARCRLSAHL---AKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM 659 (1111)
Q Consensus 583 Qd~~l~~~LTV~EnL~f~a~~~~~~~~---~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~ 659 (1111)
|+..+++..+|.||+.++........+ ........++.++..+++.+..+... .+|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 877766678888887654211100000 01011111222333445555444433 389999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPS 703 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~ 703 (1111)
+|+++ ||| ..+.+.|+++. .+.+|++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 999 67888888764 6899999999754
No 122
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.43 E-value=2.1e-16 Score=169.74 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=102.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh---cCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHhh
Q 001270 528 PGRITAVMGPSGAGKTTFLSALA---GKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCR 604 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLa---Gl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~ 604 (1111)
++++++|+||||||||||+++|+ |+.. +..|+|.++|.+.. ......+++++|+..+++..|+.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 9654 57788888775421 123345667788888888889999998754210
Q ss_pred -----ccccchHHHHHHHHHHHHH--HcC------------CCccccccccCccCCCCCHHHHHHHHHHHHH-hhCCCEE
Q 001270 605 -----LSAHLAKADKVLVIERVID--TLG------------LQTVRDSLVGTVEKRGISGGQRKRVHVGLEM-VMEPSLL 664 (1111)
Q Consensus 605 -----~~~~~~~~~~~~~v~~vL~--~LG------------L~~~~d~~vg~~~~rgLSGGQrQRVaIArAL-l~~P~lL 664 (1111)
...+..... ..++.+.. .++ +....++.+. .||| || ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~-----~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIH-----PPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEE-----TTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCc-----CCCC----Cc---cccccCCCccc
Confidence 001111111 11222221 122 2222344444 4899 66 778 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 001270 665 LLD----EPTSGLDSASSQLLLRALRREALEG 692 (1111)
Q Consensus 665 LLD----EPTSGLD~~s~~~Il~~L~~la~~G 692 (1111)
+|| |||++||..+...+.+.|+++.+++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999999887653
No 123
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.39 E-value=3.7e-16 Score=178.00 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=100.7
Q ss_pred eEeeeEEEEeC--CeEEEEEcCCCCCHHHHHHHHhcCCCCCCce----eEEEEC----CeeC--CcccccccEEEEccCC
Q 001270 518 LLRCVTGKIRP--GRITAVMGPSGAGKTTFLSALAGKAIACKAT----GLILIN----GKNE--PIHSYKKIIGFVPQDD 585 (1111)
Q Consensus 518 IL~~VS~~I~~--GeivaIiGpSGSGKSTLLkiLaGl~~~~~~s----G~I~in----G~~~--~~~~~r~~IgyV~Qd~ 585 (1111)
+.+.|++.|.+ |+.++|+||||||||||+++|+|++. +.+ |+|+++ |.+. ....+ +.|++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 35679999999 99999999999999999999999765 566 776653 2211 01111 2244444432
Q ss_pred CCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh-hCCCEE
Q 001270 586 IVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV-MEPSLL 664 (1111)
Q Consensus 586 ~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl-~~P~lL 664 (1111)
.++ ..|+.|||.+. + .+..++.+ ..+|+|++||..+++++. .+|+++
T Consensus 234 ~~~-~~t~~~nl~~~-------------------------~-~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDY-AVRHSHKIAFI-------------------------D-TDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHH-HHHHCSSEEEE-------------------------S-SCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHH-HHhccCCEEEE-------------------------e-CCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 211 11222222110 0 01111111 125777788888888775 699999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCeEEEE
Q 001270 665 LLDE---PT------SGLDSASSQLLLRALRREAL-EGVNICLVVHQPSYALFRMFDDLVLL 716 (1111)
Q Consensus 665 LLDE---PT------SGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~~~i~~~~D~vilL 716 (1111)
|||| |+ .++|...+..+.+.|+++.+ .|.+||+++|. +. ..++++.+.++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~-~~r~~~~i~~i 341 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SY-LDRYNQVKAVI 341 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SH-HHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CH-HHHHHHHHHHH
Confidence 9999 65 58999999999999988764 48899999975 32 23555555444
No 124
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.38 E-value=6e-14 Score=160.87 Aligned_cols=130 Identities=18% Similarity=0.242 Sum_probs=96.8
Q ss_pred eEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-eeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHH
Q 001270 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKA-TGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEEN 596 (1111)
Q Consensus 518 IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~-sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~En 596 (1111)
+|++++ +++|++++|+|||||||||||++|+|++. +. +|+|.+.|.+... .+++.+++|+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEY-VFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCS-CCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhh-hhccCceEEEeee-----------
Confidence 566665 78999999999999999999999999764 44 7999877755432 3566788888841
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 001270 597 LWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSA 676 (1111)
Q Consensus 597 L~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~ 676 (1111)
+|++. ..+ +.+|+++|..+|++|++|||+ |..
T Consensus 191 ----------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 22211 124 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe
Q 001270 677 SSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 677 s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~ 717 (1111)
+... +++. +..|.+|+.++|+.+ ....+|+++.|.
T Consensus 223 ~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 223 TVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 5433 3443 456899999999976 346778876653
No 125
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.36 E-value=2.3e-14 Score=168.94 Aligned_cols=154 Identities=13% Similarity=0.121 Sum_probs=105.5
Q ss_pred EeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-------cc--ccccEEEEccCCCCCC
Q 001270 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-------HS--YKKIIGFVPQDDIVHG 589 (1111)
Q Consensus 519 L~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~--~r~~IgyV~Qd~~l~~ 589 (1111)
-++|||++++|++++|+|+||||||||++.|+|++. +.+|+|.++|.+... .. .++.|+||+|+..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 368899999999999999999999999999999764 467999998766421 11 2567999999988888
Q ss_pred CCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh-hCCC-EEEEe
Q 001270 590 NLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV-MEPS-LLLLD 667 (1111)
Q Consensus 590 ~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl-~~P~-lLLLD 667 (1111)
.+||++||.++.....+ + -+++..|+.+.... +-.-.+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~~~~D--v----------VLIDTaGrl~~~~~---------lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNID--V----------LIADTAGRLQNKSH---------LMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTTCS--E----------EEECCCCSCCCHHH---------HHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCC--E----------EEEeCCCccchhhh---------HHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 88999999886431110 0 01233333222111 1223357888888764 4573 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 001270 668 EPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQ 701 (1111)
Q Consensus 668 EPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq 701 (1111)
.+|+|.|.. +.++.+.+ -|.|.|++||-
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 588886554 33444443 48899999993
No 126
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.35 E-value=4.7e-15 Score=150.73 Aligned_cols=88 Identities=17% Similarity=0.012 Sum_probs=70.7
Q ss_pred EEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEcc
Q 001270 504 FKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQ 583 (1111)
Q Consensus 504 ~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Q 583 (1111)
.+++++.| +.+.++++|||++++|++++|+||||||||||+|+|+|++ +.+|+|.++|.++......+ .+++|
T Consensus 10 ~~~~~~~~--g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l---~~~G~V~~~g~~i~~~~~~~--~~~~q 82 (158)
T 1htw_A 10 DEFSMLRF--GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI---GHQGNVKSPTYTLVEEYNIA--GKMIY 82 (158)
T ss_dssp SHHHHHHH--HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT---TCCSCCCCCTTTCEEEEEET--TEEEE
T ss_pred CHHHHHHH--HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC---CCCCeEEECCEeeeeeccCC--Cccee
Confidence 34555555 4467899999999999999999999999999999999976 47899999997653211112 28999
Q ss_pred CCCCCCCCCHHHHHHH
Q 001270 584 DDIVHGNLTVEENLWF 599 (1111)
Q Consensus 584 d~~l~~~LTV~EnL~f 599 (1111)
+..++ .+||.||+.+
T Consensus 83 ~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 83 HFDLY-RLADPEELEF 97 (158)
T ss_dssp EEECT-TCSCTTHHHH
T ss_pred ccccc-cCCcHHHHHH
Confidence 98888 8999999965
No 127
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.35 E-value=2.8e-13 Score=154.46 Aligned_cols=123 Identities=24% Similarity=0.154 Sum_probs=87.5
Q ss_pred eEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEEC-CeeCCcccccccEEEEccCCCCCCCCCHHHH
Q 001270 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILIN-GKNEPIHSYKKIIGFVPQDDIVHGNLTVEEN 596 (1111)
Q Consensus 518 IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~in-G~~~~~~~~r~~IgyV~Qd~~l~~~LTV~En 596 (1111)
-++++++. .+|++++|+||||+|||||+|+|+|... .+.+|+|.++ |+... ...++.+++++|+..+++..||+|+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQN-EILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSS-CCCCC--------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccc-ccccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh
Confidence 45666664 4899999999999999999999999764 1478999987 75432 2345679999999988888899884
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 001270 597 LWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEM 657 (1111)
Q Consensus 597 L~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArAL 657 (1111)
. . ..+...+....+.++++.+|+.+..+..+.+ +| ||+||++||+++
T Consensus 282 ~---l-----~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~-----lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 G---L-----WHLEPEQITQGFVEFHDYLGHCKYRDCKHDA-----DP-GCAIREAVENGA 328 (358)
T ss_dssp C---C-----CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSS-----CT-TCHHHHHHHHTS
T ss_pred h---h-----cCCCHHHHHHHHHHHHHHcCCchhcCCCccc-----CC-HHHHHHHHHhcC
Confidence 2 1 1233444445677888999999888887765 99 999999999864
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.34 E-value=3.5e-16 Score=177.12 Aligned_cols=174 Identities=13% Similarity=0.106 Sum_probs=113.1
Q ss_pred EEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-------ccccc
Q 001270 504 FKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-------HSYKK 576 (1111)
Q Consensus 504 ~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~r~ 576 (1111)
++++++.| +.+.+|+++++++.+|++++|+|+||||||||+++|+|++. +.+|+|.+.|.+... ...++
T Consensus 32 ~~~~~~~~--~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 32 SRRADHRA--AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp CSSHHHHH--HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred eCCccccc--ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhh
Confidence 34555555 33568999999999999999999999999999999999754 468999999977521 13467
Q ss_pred cEEEEccCCCCCCCC------------CHHHHHHHHHH-------------------h--hcc-----ccch-HHHHH--
Q 001270 577 IIGFVPQDDIVHGNL------------TVEENLWFHAR-------------------C--RLS-----AHLA-KADKV-- 615 (1111)
Q Consensus 577 ~IgyV~Qd~~l~~~L------------TV~EnL~f~a~-------------------~--~~~-----~~~~-~~~~~-- 615 (1111)
++++++|++.++... ++.|.+..... . ..+ .... ..+..
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 799999998877532 23333311100 0 000 0000 00000
Q ss_pred -HHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001270 616 -LVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVM------EPSLLLLDEPTSGLDSASSQLLLRALRRE 688 (1111)
Q Consensus 616 -~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~------~P~lLLLDEPTSGLD~~s~~~Il~~L~~l 688 (1111)
..+.+....+.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|.....++++.|.++
T Consensus 188 ~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 001111111222 222211 113479999999999999987 688887 9999999999999999886
Q ss_pred Hh
Q 001270 689 AL 690 (1111)
Q Consensus 689 a~ 690 (1111)
..
T Consensus 259 ~~ 260 (337)
T 2qm8_A 259 RS 260 (337)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 129
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.34 E-value=1.5e-12 Score=137.59 Aligned_cols=148 Identities=22% Similarity=0.269 Sum_probs=84.6
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----ceeEEEECCeeC-Ccc---cccccEEEEccCCCCCCCCCHH
Q 001270 524 GKIRPGRITAVMGPSGAGKTTFLSALAGKAIACK-----ATGLILINGKNE-PIH---SYKKIIGFVPQDDIVHGNLTVE 594 (1111)
Q Consensus 524 ~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~-----~sG~I~inG~~~-~~~---~~r~~IgyV~Qd~~l~~~LTV~ 594 (1111)
+-|++|++++|+||||||||||++.|++.....+ ..|.+++++... ... .+.+.+++.+|
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~----------- 87 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS----------- 87 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH-----------
Confidence 3489999999999999999999999999321112 457777776531 110 01111222211
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCC
Q 001270 595 ENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKR-VHVGLEMV--MEPSLLLLDEPTS 671 (1111)
Q Consensus 595 EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQR-VaIArALl--~~P~lLLLDEPTS 671 (1111)
++++.+-+ . ...++.+... +.-+.+++ .+|+++++|||++
T Consensus 88 -------------------------~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 88 -------------------------DVLDNVAY-------A-----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp -------------------------HHHHTEEE-------E-----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred -------------------------HHhhCeEE-------E-----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 11111100 0 1134444332 23333343 5899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHhC-CCEEEEEecCccHH------------------HHHhcCeEEEEeCC
Q 001270 672 GLDSA-------S-----SQLLLRALRREALE-GVNICLVVHQPSYA------------------LFRMFDDLVLLAKG 719 (1111)
Q Consensus 672 GLD~~-------s-----~~~Il~~L~~la~~-G~TVIivtHq~~~~------------------i~~~~D~vilL~~G 719 (1111)
.+|+. . ...+++.|++++++ |.|||+++|..... +...+|.+++|.++
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99985 3 34566667776654 99999999965432 11167888888753
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.33 E-value=6.6e-14 Score=158.07 Aligned_cols=143 Identities=12% Similarity=0.079 Sum_probs=99.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc-------cccc--cEEEEccCCCCCCCCCHHHHH
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH-------SYKK--IIGFVPQDDIVHGNLTVEENL 597 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~-------~~r~--~IgyV~Qd~~l~~~LTV~EnL 597 (1111)
++|++++|+||||||||||++.|+|++. +.+|+|.+.|.+.... .+++ .+.+++|+..+.+.+||+||+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 6899999999999999999999999764 5789999999875321 1223 356999999999999999999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 001270 598 WFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSAS 677 (1111)
Q Consensus 598 ~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s 677 (1111)
.++....... .+++..|+.+..+... ++.-.|++++..++.+++||.+|.
T Consensus 205 ~~~~~~~~d~------------vliDtaG~~~~~~~l~------------~eL~~i~ral~~de~llvLDa~t~------ 254 (328)
T 3e70_C 205 QHAKARGIDV------------VLIDTAGRSETNRNLM------------DEMKKIARVTKPNLVIFVGDALAG------ 254 (328)
T ss_dssp HHHHHHTCSE------------EEEEECCSCCTTTCHH------------HHHHHHHHHHCCSEEEEEEEGGGT------
T ss_pred HHHHhccchh------------hHHhhccchhHHHHHH------------HHHHHHHHHhcCCCCEEEEecHHH------
Confidence 8764311000 0122234433222222 222348899998888888885554
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCc
Q 001270 678 SQLLLRALRREAL-EGVNICLVVHQP 702 (1111)
Q Consensus 678 ~~~Il~~L~~la~-~G~TVIivtHq~ 702 (1111)
+.+++.++.+.+ .+.|+|++||..
T Consensus 255 -~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 -NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp -THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred -HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 345566666653 589999999954
No 131
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.32 E-value=1.1e-14 Score=149.79 Aligned_cols=139 Identities=15% Similarity=0.185 Sum_probs=88.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CceeEEEECCeeC-C-----ccccc-ccEE----EEccCCCCCCCCCHHHHH
Q 001270 530 RITAVMGPSGAGKTTFLSALAGKAIAC-KATGLILINGKNE-P-----IHSYK-KIIG----FVPQDDIVHGNLTVEENL 597 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl~~~~-~~sG~I~inG~~~-~-----~~~~r-~~Ig----yV~Qd~~l~~~LTV~EnL 597 (1111)
++++|+|+||||||||+++|+|++.+. ...|.|.++|.++ . ...+| +.+| +++|+..++ +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999976421 1279999999863 2 22455 4577 889987655 110
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHH-cCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 001270 598 WFHARCRLSAHLAKADKVLVIERVIDT-LGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLL-------LLDEP 669 (1111)
Q Consensus 598 ~f~a~~~~~~~~~~~~~~~~v~~vL~~-LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lL-------LLDEP 669 (1111)
. ..+....++++++. +. -.|+.+++ +||||||||++||||++.+|++. +=|.|
T Consensus 77 ----------~--~~~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 ----------V--SEEEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ----------C--CHHHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ----------C--ChhhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 00111235566665 53 24677765 59999999999999999999873 22555
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCC
Q 001270 670 TSG---LDSASSQLLLRALRREALEGV 693 (1111)
Q Consensus 670 TSG---LD~~s~~~Il~~L~~la~~G~ 693 (1111)
..+ +|......+.+.+.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 344455677777766666653
No 132
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.30 E-value=7.9e-12 Score=142.84 Aligned_cols=77 Identities=23% Similarity=0.365 Sum_probs=67.2
Q ss_pred CCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeE
Q 001270 641 RGISGGQRKRV------HVGLEMVME-PSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDL 713 (1111)
Q Consensus 641 rgLSGGQrQRV------aIArALl~~-P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~v 713 (1111)
..|||||+||| ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. ++.+||+|||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 46999999988 567889999 99999999999999999999999998864 3569999999986 35889999
Q ss_pred EEEeCCc
Q 001270 714 VLLAKGG 720 (1111)
Q Consensus 714 ilL~~GG 720 (1111)
++|.+.|
T Consensus 356 ~~l~k~~ 362 (371)
T 3auy_A 356 INVKKDG 362 (371)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9998544
No 133
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.24 E-value=2.8e-13 Score=150.48 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=86.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHH---hh
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHAR---CR 604 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~---~~ 604 (1111)
++.+++|.|+||||||||.+.|.+++.. .| . . ++.+.+|+||+.+++. ++++|+.++.. +.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 6789999999999999999999996531 12 0 1 3456677999988854 88999987631 01
Q ss_pred ccccchHHHHHHHHHHHHHHcCCC--cc--ccccccCccCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHH
Q 001270 605 LSAHLAKADKVLVIERVIDTLGLQ--TV--RDSLVGTVEKRGISGGQRKRVHVG--LEMVMEPSLLLLDEPTSGLDSAS 677 (1111)
Q Consensus 605 ~~~~~~~~~~~~~v~~vL~~LGL~--~~--~d~~vg~~~~rgLSGGQrQRVaIA--rALl~~P~lLLLDEPTSGLD~~s 677 (1111)
...+.+.......+.+.++.+... .. ....+. ...+.+||||+||+++| +++ +|+|||+||||++||+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 001111111123455667766332 11 111111 12356999999999997 555 999999999999999853
No 134
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.24 E-value=5.9e-15 Score=171.62 Aligned_cols=148 Identities=20% Similarity=0.178 Sum_probs=99.9
Q ss_pred EEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-------cccc
Q 001270 503 SFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-------HSYK 575 (1111)
Q Consensus 503 ~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~r 575 (1111)
++++|++.| +...+|+++ + .++|++++|+|||||||||||++|+|++. +.+|+|.+.|.++.. ..++
T Consensus 145 ~l~~Lg~~~--~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 145 DLHSLGMTA--HNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CGGGSCCCH--HHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CHHHcCCCH--HHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEEc
Confidence 455565554 334578888 5 38999999999999999999999999764 468999998876531 1234
Q ss_pred ccEEEEc---------cCCCC--CCC----CCHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHcCCCccccccccCcc
Q 001270 576 KIIGFVP---------QDDIV--HGN----LTVEENLWFHARCRLS-AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVE 639 (1111)
Q Consensus 576 ~~IgyV~---------Qd~~l--~~~----LTV~EnL~f~a~~~~~-~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~ 639 (1111)
+.+|+++ |++.+ ++. .|+.+++.++..-... ..+........++ .+..+|+.... .+.
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~~~--~~~--- 292 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEPFL--ISS--- 292 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCHHH--HHH---
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcHHH--HHH---
Confidence 5567766 88765 343 6899999876421110 0011001111223 46678887643 333
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001270 640 KRGISGGQRKRVHVGLEMVMEPSLLLL 666 (1111)
Q Consensus 640 ~rgLSGGQrQRVaIArALl~~P~lLLL 666 (1111)
.|||||+|| |||+|+.+|+++.-
T Consensus 293 --~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 293 --SLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp --HEEEEEEEE--EEEEECTTTCEEEE
T ss_pred --HHHHHHHHH--hhhhhcCCCCccCC
Confidence 499999999 99999999998763
No 135
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.22 E-value=3.1e-13 Score=157.10 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=93.4
Q ss_pred EeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHH
Q 001270 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLW 598 (1111)
Q Consensus 519 L~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~ 598 (1111)
-++|+++++.|+.++|+|+|||||||||++|+|... .+.+.+.. .+...+|+|.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEeccc
Confidence 489999999999999999999999999999999631 23333221 22334566665430 0111111110
Q ss_pred HHHHhhccccchHH--HHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 001270 599 FHARCRLSAHLAKA--DKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSA 676 (1111)
Q Consensus 599 f~a~~~~~~~~~~~--~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~ 676 (1111)
+.........+... ...++++.++..+++. +..+. .||+||+||+.+|++|+.+|.||++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~~-----~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPLK-----TLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHHH-----HHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHH-----HHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000001100 0001122233333443 23333 4999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHHH-hCCCEEEEEecC
Q 001270 677 SSQLLLRALRREA-LEGVNICLVVHQ 701 (1111)
Q Consensus 677 s~~~Il~~L~~la-~~G~TVIivtHq 701 (1111)
.. ..++.+++.. ..|.+++.+|..
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~ 307 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSAL 307 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTT
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECC
Confidence 77 4555555544 457777766643
No 136
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.22 E-value=5e-13 Score=148.95 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=82.4
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEE---CCeeCCcc--ccc-ccEEEEccCCCCC-----CCCCHH
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILI---NGKNEPIH--SYK-KIIGFVPQDDIVH-----GNLTVE 594 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~i---nG~~~~~~--~~r-~~IgyV~Qd~~l~-----~~LTV~ 594 (1111)
+.+|++++|+||||||||||+|+|+ +.. +.+|+|.+ +|++.... ..+ +.+|||+|++.+. +++|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 3469999999999999999999999 765 57899999 88765422 122 3689999998654 67899
Q ss_pred HHH--HHHH----HhhccccchHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHH
Q 001270 595 ENL--WFHA----RCRLSAHLAKADKVLVIERVIDTLGLQT-VRDSLVGTVEKRGISGGQRKRVHVGLE 656 (1111)
Q Consensus 595 EnL--~f~a----~~~~~~~~~~~~~~~~v~~vL~~LGL~~-~~d~~vg~~~~rgLSGGQrQRVaIArA 656 (1111)
||+ .|.. .++........+....++++++.+||.+ ..++++.. |||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~-----ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKI-----IKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHH-----TTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHH-----HHHHHHHHHHHhcc
Confidence 888 4431 0111110111122345889999999986 66777654 99988899999874
No 137
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.21 E-value=9.6e-12 Score=126.79 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=42.1
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccH
Q 001270 658 VMEPSLLLLDEPTS-GLDSASSQLLLRALRREALEGVNICLVVHQPSY 704 (1111)
Q Consensus 658 l~~P~lLLLDEPTS-GLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~ 704 (1111)
+.+|++||||||++ ++|+..+..+.++|.+..++|+++|++||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999995 999999999999999887789999999998754
No 138
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.18 E-value=1.1e-11 Score=124.42 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=36.4
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCc
Q 001270 658 VMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVN-ICLVVHQP 702 (1111)
Q Consensus 658 l~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~T-VIivtHq~ 702 (1111)
+.+|++|++|||++ +|...+..+.+++.++.++|++ +|+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 45799999999998 6655588899999988877888 88888854
No 139
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.16 E-value=1.3e-11 Score=142.85 Aligned_cols=130 Identities=21% Similarity=0.263 Sum_probs=76.5
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHH--hcCCCCC---CceeEEEECCeeC-Ccc---cccccEEEEccCCCCCCCCCHH
Q 001270 524 GKIRPGRITAVMGPSGAGKTTFLSAL--AGKAIAC---KATGLILINGKNE-PIH---SYKKIIGFVPQDDIVHGNLTVE 594 (1111)
Q Consensus 524 ~~I~~GeivaIiGpSGSGKSTLLkiL--aGl~~~~---~~sG~I~inG~~~-~~~---~~r~~IgyV~Qd~~l~~~LTV~ 594 (1111)
+-|++|++++|+||||||||||++.| .+..++. ...+.|+++++.. ... .+.+.+|+.+| ++.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vl 244 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DAL 244 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHh
Confidence 46999999999999999999999955 4543210 1234777776531 100 01111222111 111
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH-HHHHHHHHHHHHh--hCCCEEEEeCCCC
Q 001270 595 ENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISG-GQRKRVHVGLEMV--MEPSLLLLDEPTS 671 (1111)
Q Consensus 595 EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSG-GQrQRVaIArALl--~~P~lLLLDEPTS 671 (1111)
+|+. +. +..++ .+.+.+..+.+++ .+|+++++||||+
T Consensus 245 eni~------------------------------------~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 245 NNVA------------------------------------YA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HTEE------------------------------------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred hcEE------------------------------------Ee----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 1111 10 01122 2233333333333 4799999999999
Q ss_pred CCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecC
Q 001270 672 GLDSASS------------QLLLRALRREALE-GVNICLVVHQ 701 (1111)
Q Consensus 672 GLD~~s~------------~~Il~~L~~la~~-G~TVIivtHq 701 (1111)
.+|.... ..+++.|++++++ |.|||+|+|.
T Consensus 285 ~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 285 LYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp GCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 9997543 5678888888765 9999999998
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=3.2e-11 Score=135.11 Aligned_cols=136 Identities=16% Similarity=0.171 Sum_probs=74.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc-CCCCCCceeEEEECCeeCC-cccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccc
Q 001270 532 TAVMGPSGAGKTTFLSALAG-KAIACKATGLILINGKNEP-IHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHL 609 (1111)
Q Consensus 532 vaIiGpSGSGKSTLLkiLaG-l~~~~~~sG~I~inG~~~~-~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~ 609 (1111)
+.|.||||+|||||+++|++ +.. +..|.|.++|.+.. ....+..+++++|.+.+.-..+ + .+ ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~-------~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D---MG-------NN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h---cC-------Cc
Confidence 89999999999999999999 443 56799999987643 1223567899998765421111 0 00 00
Q ss_pred hHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001270 610 AKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREA 689 (1111)
Q Consensus 610 ~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la 689 (1111)
... .+++.++.+......+... .||| +..+|+|+|+|||++ ||..+...+++.|.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 000 1233333332111111111 2576 788999999999999 99999999999998753
Q ss_pred hCCCEEEEEecCccH
Q 001270 690 LEGVNICLVVHQPSY 704 (1111)
Q Consensus 690 ~~G~TVIivtHq~~~ 704 (1111)
.+.++|+++|++..
T Consensus 163 -~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSP 176 (354)
T ss_dssp -TTEEEEEEESCSCS
T ss_pred -CCCEEEEEeCCHHH
Confidence 47899999999764
No 141
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.13 E-value=5.8e-14 Score=167.21 Aligned_cols=177 Identities=15% Similarity=0.107 Sum_probs=106.9
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCC---------
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDI--------- 586 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~--------- 586 (1111)
..+++++++.+++|+.++|+|||||||||||++|+|++. +.+|.|++.|.+.-...-...++++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 357889999999999999999999999999999999775 578999999865211111344566655433
Q ss_pred -------------CCCCCCHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHcCC-----Cc----cccccccCccCCCC
Q 001270 587 -------------VHGNLTVEENLWFHARCRLSA-HLAKADKVLVIERVIDTLGL-----QT----VRDSLVGTVEKRGI 643 (1111)
Q Consensus 587 -------------l~~~LTV~EnL~f~a~~~~~~-~~~~~~~~~~v~~vL~~LGL-----~~----~~d~~vg~~~~rgL 643 (1111)
++..++..|++.+........ .+... ....++++++++.. .. ..+..+. ....+
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~-Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~--~~~~~ 401 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTL-HAGDINQMVYRLESEPLKVPRSMLQFLDIALV--QTMWV 401 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEE-ECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEE--EEEEE
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccccc-ccCCHHHHHHHHHhcccccHHHHHhhccEEEE--EEEEE
Confidence 223445555443322211000 00000 00012334444332 11 1111000 12347
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCccHHHHHhc
Q 001270 644 SGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICL--VVHQPSYALFRMF 710 (1111)
Q Consensus 644 SGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIi--vtHq~~~~i~~~~ 710 (1111)
||||+||+.++. + | |+|||+.....+++.|.++..+|.|+++ +||+++. +.+.+
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~e-i~~~~ 457 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEK-MADFL 457 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHH-HHHHH
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHH-HHHHc
Confidence 999999987651 2 7 9999998877777777766666888875 8998864 33444
No 142
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.12 E-value=2.6e-13 Score=142.22 Aligned_cols=165 Identities=20% Similarity=0.122 Sum_probs=89.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhc
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRL 605 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~ 605 (1111)
.++|++++|+||||||||||+++|+|++.+ . | ..+|+|++++..+.. +..+++........
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~--~-g---------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA--Q-G---------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH--T-T---------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh--c-C---------------CceEEEecCCCcCCH-HHHHHhcccccCCC
Confidence 468999999999999999999999997642 1 2 124555555443321 22222110000001
Q ss_pred cccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 001270 606 SAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVG-LEMVMEPSLLLLDEPTSGLDSASSQLLLRA 684 (1111)
Q Consensus 606 ~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIA-rALl~~P~lLLLDEPTSGLD~~s~~~Il~~ 684 (1111)
+...... .+.+++..+...+..+....+ ...++|+||+||++++ ++++.++.++++|||.. ..
T Consensus 80 ~~~~~~~----~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~ 143 (208)
T 3c8u_A 80 PETFDFE----GFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RD 143 (208)
T ss_dssp GGGBCHH----HHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GG
T ss_pred CchhhHH----HHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HH
Confidence 1111111 122333333111111222222 2234799999999998 88888888888888841 11
Q ss_pred HHHHHhCCCEEEEEecCccHHHHHhcCeEEEEeCCcEEEEecCHhhHHHHHH
Q 001270 685 LRREALEGVNICLVVHQPSYALFRMFDDLVLLAKGGLTVYHGSVKKVEEYFA 736 (1111)
Q Consensus 685 L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~~GG~iv~~G~~~~l~~~f~ 736 (1111)
+. ..--.+|++.++.+..+.+...|. +.. |. +.+++...+.
T Consensus 144 l~---~~~d~~i~vd~~~~~~~~R~~~R~--~~~-g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 144 LT---AIWDVSIRLEVPMADLEARLVQRW--LDH-GL-----NHDAAVARAQ 184 (208)
T ss_dssp GG---GTCSEEEEECCCHHHHHHHHHHHH--HHT-TC-----CHHHHHHHHH
T ss_pred HH---HhcCEEEEEeCCHHHHHHHHHHHH--Hhc-CC-----CHHHHHHHHH
Confidence 12 222367888888765555666652 233 33 5666665554
No 143
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.01 E-value=5.3e-14 Score=146.97 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=41.9
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCeEEEEe
Q 001270 653 VGL-EMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 653 IAr-ALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~~i~~~~D~vilL~ 717 (1111)
+++ +++.+|++++|||+|+++|..+...|.+.|.+..++ +.+.|.+ ..+|.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 678888888999999999999999999988876543 2345621 4688877664
No 144
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.01 E-value=3.2e-13 Score=150.72 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=76.6
Q ss_pred EEEEeEEEEEcCCcceeEeeeEEEE-------------------eCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEE
Q 001270 502 VSFKDLTLTLKGKNKHLLRCVTGKI-------------------RPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLI 562 (1111)
Q Consensus 502 L~~~nLs~~y~~~~k~IL~~VS~~I-------------------~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I 562 (1111)
|+++||++.|. +++++|++.+ .+|+++||+||||||||||+++|+|++...+.+|+|
T Consensus 38 i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 38 LSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp CCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred cchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 56678888772 5889999988 899999999999999999999999965311478999
Q ss_pred EE---CCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q 001270 563 LI---NGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARC 603 (1111)
Q Consensus 563 ~i---nG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~ 603 (1111)
.+ +|..... ..++.+|++ |+..+++.+|+.+++.+...+
T Consensus 114 ~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 114 ELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp EEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred EEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 99 8866432 234568899 887777889999999876543
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.01 E-value=1.6e-11 Score=136.61 Aligned_cols=103 Identities=14% Similarity=0.185 Sum_probs=67.7
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEE---CCeeCCcc--cc-cccEEEEccCCC-------------
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILI---NGKNEPIH--SY-KKIIGFVPQDDI------------- 586 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~i---nG~~~~~~--~~-r~~IgyV~Qd~~------------- 586 (1111)
+..|++++|+||||||||||||+|+|+.. +.+|+|.+ +|++.... .+ .+.+|||+|++.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 45799999999999999999999999765 57899999 88765321 11 236899999974
Q ss_pred ---CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCC-ccccccccC
Q 001270 587 ---VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQ-TVRDSLVGT 637 (1111)
Q Consensus 587 ---l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~-~~~d~~vg~ 637 (1111)
+++++|+ ||+.|... .. ..+...+++++++.+||. +..++++..
T Consensus 244 ~~~l~~~~~~-~n~~~~~~-~~-----~~e~~~~v~~~l~~~~L~~~~~~~~~~~ 291 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDC-NH-----VDEPECGVKEAVENGEIAESRYENYVKM 291 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTC-CS-----SSCSSCHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCC-cC-----CCCCCcHHHHHHHcCCCCHHHHHHHHHH
Confidence 5788999 99988531 11 112224578999999995 666766653
No 146
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.96 E-value=1.6e-13 Score=150.90 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=96.7
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccccEEEEccCC-CCCCCC
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKIIGFVPQDD-IVHGNL 591 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~IgyV~Qd~-~l~~~L 591 (1111)
..+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.. ....+.+++++|.. ...+.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 45788999999999 99999999999999999999653 2799999976532 12345688888874 455666
Q ss_pred CHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001270 592 TVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671 (1111)
Q Consensus 592 TV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTS 671 (1111)
++.|++.+....+. ... .. .+....++.+. .|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~-----~~~----~~------~~~~~~~~~l~-----~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRS-----DRE----TG------ASVRVVNQLLT-----EMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHHH-----HHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccC-----CCc----ch------HHHHHHHHHHH-----hhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 77777754321110 000 00 12223344443 39999999999999999999985 98864
Q ss_pred ------------CCCHHHHHHHHHHH
Q 001270 672 ------------GLDSASSQLLLRAL 685 (1111)
Q Consensus 672 ------------GLD~~s~~~Il~~L 685 (1111)
-.|...+..|++.+
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 23566666655543
No 147
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.93 E-value=3.2e-12 Score=143.87 Aligned_cols=161 Identities=18% Similarity=0.177 Sum_probs=102.1
Q ss_pred CcceeEeeeEEEEeCC-------eEEEEEcCCCCCHHHHHHHHhcCCCC--CCceeEEEECCeeCCc---ccccccEEEE
Q 001270 514 KNKHLLRCVTGKIRPG-------RITAVMGPSGAGKTTFLSALAGKAIA--CKATGLILINGKNEPI---HSYKKIIGFV 581 (1111)
Q Consensus 514 ~~k~IL~~VS~~I~~G-------eivaIiGpSGSGKSTLLkiLaGl~~~--~~~sG~I~inG~~~~~---~~~r~~IgyV 581 (1111)
+...+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.++.. ...+..|+|+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3456889999999877 89999999999999999999996421 1356666655544211 1124579999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhC
Q 001270 582 PQDDIVHGNLTVEENLWFHARCRLSAH-LAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVME 660 (1111)
Q Consensus 582 ~Qd~~l~~~LTV~EnL~f~a~~~~~~~-~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~ 660 (1111)
.|.+.+.+ ++.|+|..........- .........++..+..++|.. ..+.++. ||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~-----Ls~~l~sR~~l~------ 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGL-----LSSPLRSRFGII------ 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGG-----SCHHHHTTCSEE------
T ss_pred cchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCccc-----CCHHHHHhcCce------
Confidence 99887765 78888854432211000 001111123444455556644 4555544 999999998655
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCcc
Q 001270 661 PSLLLLDEPTSGLDSASSQLLLRALRREAL-EGVNICLVVHQPS 703 (1111)
Q Consensus 661 P~lLLLDEPTSGLD~~s~~~Il~~L~~la~-~G~TVIivtHq~~ 703 (1111)
.+||+.+..++.++|++.++ .+ ++|+.+
T Consensus 175 ----------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~ 203 (334)
T 1in4_A 175 ----------LELDFYTVKELKEIIKRAASLMD-----VEIEDA 203 (334)
T ss_dssp ----------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHH
T ss_pred ----------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHH
Confidence 78888889999999988764 34 356654
No 148
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.92 E-value=7e-11 Score=132.29 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=67.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEE---CCeeCCcc-c-ccccEEEEccCCCCCC----CCCHHH
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILI---NGKNEPIH-S-YKKIIGFVPQDDIVHG----NLTVEE 595 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~i---nG~~~~~~-~-~r~~IgyV~Qd~~l~~----~LTV~E 595 (1111)
++.+|++++|+||||+|||||+|+|+|... +.+|+|.+ +|+..... . ++..+|||+|.+.+.. .+|+ |
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 356899999999999999999999999764 57899998 78664321 2 2222799999987765 6899 8
Q ss_pred HHH--HHHH--h----hccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 001270 596 NLW--FHAR--C----RLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKR 650 (1111)
Q Consensus 596 nL~--f~a~--~----~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQR 650 (1111)
+|. |... . +........+....++++++.++|.+.+...... |+.|++||
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~-----lls~~~~~ 303 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVE-----FMTEIKDR 303 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH-----HHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHH-----HHHHHhhc
Confidence 883 3211 0 1011011112223578899999998754333322 77788773
No 149
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.89 E-value=1.2e-12 Score=151.05 Aligned_cols=171 Identities=13% Similarity=0.126 Sum_probs=114.9
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCC----------CCCCceeEEEECCeeCCc----ccccccE---EEEccCCCC
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALAGKA----------IACKATGLILINGKNEPI----HSYKKII---GFVPQDDIV 587 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLaGl~----------~~~~~sG~I~inG~~~~~----~~~r~~I---gyV~Qd~~l 587 (1111)
.+++|..++|+|+||+|||||+|+|+|.. ...+..|.|.++|..... ..-++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 35789999999999999999999999932 123678999999853210 1112233 477788888
Q ss_pred CCCCCHHHHH--HHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCC--CE
Q 001270 588 HGNLTVEENL--WFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEP--SL 663 (1111)
Q Consensus 588 ~~~LTV~EnL--~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P--~l 663 (1111)
+..++..|++ .|...++. ++.++..++..+ +..+ ..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~~i-----~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DAEI-----IHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TTCS-----SCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--ccee-----eeecccc------------Ccchhh
Confidence 8877876665 34332221 011111112111 1222 1255542 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCccHHHHHhcCeEE-EEeCCcEEEEecCHh
Q 001270 664 LLLDEPTSGLDSASSQLLLRALRRE-ALEGVNICLVVHQPSYALFRMFDDLV-LLAKGGLTVYHGSVK 729 (1111)
Q Consensus 664 LLLDEPTSGLD~~s~~~Il~~L~~l-a~~G~TVIivtHq~~~~i~~~~D~vi-lL~~GG~iv~~G~~~ 729 (1111)
+++|||+.++|+......++.++++ .+.|.||+ +|.... +.+++|++. +|.+|.++++.|+..
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~-~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKE-EQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHH-HHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHH-HHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999999999999999999887 66677764 998864 568999998 777641556666543
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.84 E-value=9.8e-10 Score=128.85 Aligned_cols=179 Identities=15% Similarity=0.113 Sum_probs=107.2
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCcee-EEEECCeeCCccccccc-EEEEccCCCCCCCCCHH
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG-LILINGKNEPIHSYKKI-IGFVPQDDIVHGNLTVE 594 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG-~I~inG~~~~~~~~r~~-IgyV~Qd~~l~~~LTV~ 594 (1111)
..|+++.+-+++|+++.|.|++|+|||||+..|++... ...| .|.+.+.+.+...+.++ ++.... ...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~--~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA--TKTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH--HHSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HhCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-
Confidence 45788887899999999999999999999999988432 1123 34333322221111111 000000 000
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCC
Q 001270 595 ENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV--MEPSLLLLDEPTSG 672 (1111)
Q Consensus 595 EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl--~~P~lLLLDEPTSG 672 (1111)
+.+ +. ..+...+ ..++.+.++.++..+..-.. ..++|.+|.+ +.++.++ .+|+++++|+++..
T Consensus 261 ~~l------~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 QNL------RT-GKLTPED-WGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HHH------HT-SCCCHHH-HHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred HHH------hc-CCCCHHH-HHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 001 00 0122222 22345555555443322111 2358999987 5667776 68999999999987
Q ss_pred CCH--------HHHHHHHHHHHHHHhC-CCEEEEEec---------C--ccH-------HHHHhcCeEEEEeCCc
Q 001270 673 LDS--------ASSQLLLRALRREALE-GVNICLVVH---------Q--PSY-------ALFRMFDDLVLLAKGG 720 (1111)
Q Consensus 673 LD~--------~s~~~Il~~L~~la~~-G~TVIivtH---------q--~~~-------~i~~~~D~vilL~~GG 720 (1111)
.+. .....+.+.|+.++++ |.+||+++| + |.. .+.+.+|.+++|.++.
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 742 3446777888888765 999999999 2 321 3557899999998653
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.84 E-value=3.9e-10 Score=119.20 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=44.2
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCccHH-------HHHhcCeEEEEeC
Q 001270 659 MEPSLLLLDEPTSGL--DSASSQLLLRALRREA-LEGVNICLVVHQPSYA-------LFRMFDDLVLLAK 718 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGL--D~~s~~~Il~~L~~la-~~G~TVIivtHq~~~~-------i~~~~D~vilL~~ 718 (1111)
.+|+++++|||++.+ |+.....++..|.+++ +.|.|||+++|..... +.+.+|.++.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6645556666666654 5699999999987641 3467898888864
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.79 E-value=2e-09 Score=120.41 Aligned_cols=111 Identities=17% Similarity=0.246 Sum_probs=76.6
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q 001270 524 GKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARC 603 (1111)
Q Consensus 524 ~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~ 603 (1111)
+..++|++++|+|+|||||||++..|++.+. +..|+|.+.+.+.. |. ...|.
T Consensus 99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~----r~---------------~a~eq------- 150 (306)
T 1vma_A 99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTF----RA---------------AAIEQ------- 150 (306)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTT----CH---------------HHHHH-------
T ss_pred ccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccc----cH---------------HHHHH-------
Confidence 3456899999999999999999999999654 34577777664421 10 00111
Q ss_pred hccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 001270 604 RLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRV---HVGLEMVMEPSLLLLDEPTSGLDSASSQL 680 (1111)
Q Consensus 604 ~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRV---aIArALl~~P~lLLLDEPTSGLD~~s~~~ 680 (1111)
+..+.+.+|+.- +. ..|||+.+++ +|++++..+|+++|+|||.. ......
T Consensus 151 --------------L~~~~~~~gl~~-----~~-----~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~ 203 (306)
T 1vma_A 151 --------------LKIWGERVGATV-----IS-----HSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKN 203 (306)
T ss_dssp --------------HHHHHHHHTCEE-----EC-----CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHH
T ss_pred --------------HHHHHHHcCCcE-----Ee-----cCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHH
Confidence 223344556642 11 2689999999 99999999999999999974 344555
Q ss_pred HHHHHHHHH
Q 001270 681 LLRALRREA 689 (1111)
Q Consensus 681 Il~~L~~la 689 (1111)
+++.|+++.
T Consensus 204 l~~eL~~l~ 212 (306)
T 1vma_A 204 LMEELRKVH 212 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666553
No 153
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.78 E-value=2.2e-10 Score=136.22 Aligned_cols=164 Identities=15% Similarity=0.094 Sum_probs=98.0
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhc--CCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCC--CHHHH
Q 001270 521 CVTGKIRPGRITAVMGPSGAGKTTFLSALAG--KAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNL--TVEEN 596 (1111)
Q Consensus 521 ~VS~~I~~GeivaIiGpSGSGKSTLLkiLaG--l~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~L--TV~En 596 (1111)
.+++++.++..+.|.|++||||||+|+.|.. +... ..|++.+.+.+.....+ +....+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhh--------hhhccCCcccceeecC
Confidence 4678888999999999999999999999875 2222 33666655544321111 111111221 22223
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccc--cccCccCCCCCHHHHHHH----------HHHHHHhhCCC-E
Q 001270 597 LWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDS--LVGTVEKRGISGGQRKRV----------HVGLEMVMEPS-L 663 (1111)
Q Consensus 597 L~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~--~vg~~~~rgLSGGQrQRV----------aIArALl~~P~-l 663 (1111)
...+... + .....+...+ .++++.+|+.+..+. .+. ..+||||+||. .+++++...|. +
T Consensus 229 ~~~a~~~-L--~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 229 MKDAANA-L--RWCVNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHH-H--HHHHHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHH-H--HHHHHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEE
Confidence 3222111 0 0112223333 367888888765432 121 13788887753 35666778898 7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC----CCEEEEEecCcc
Q 001270 664 LLLDEPTSGLDSASSQLLLRALRREALE----GVNICLVVHQPS 703 (1111)
Q Consensus 664 LLLDEPTSGLD~~s~~~Il~~L~~la~~----G~TVIivtHq~~ 703 (1111)
+++||++.-+|.. ...+.+.|.++++. |.++|++||+|+
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8999999988843 34566666666433 779999999997
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.73 E-value=1.9e-08 Score=111.80 Aligned_cols=130 Identities=20% Similarity=0.151 Sum_probs=86.7
Q ss_pred EEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEcc
Q 001270 504 FKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQ 583 (1111)
Q Consensus 504 ~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Q 583 (1111)
++++++.|+. .. ++++++ +|++++|+|+||+||||++..|++... +..|+|.+.+.+.....
T Consensus 79 ~~~l~~~~~~--~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~---------- 140 (295)
T 1ls1_A 79 YEALKEALGG--EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA---------- 140 (295)
T ss_dssp HHHHHHHTTS--SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH----------
T ss_pred HHHHHHHHCC--CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh----------
Confidence 3455555532 21 678887 999999999999999999999999654 34678887765431100
Q ss_pred CCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCE
Q 001270 584 DDIVHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSL 663 (1111)
Q Consensus 584 d~~l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~l 663 (1111)
++ +.+ ..+.+..|+.-.... .+..-.+.+|.+|+.+...++++
T Consensus 141 --------~~-~ql---------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 141 --------AR-EQL---------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp --------HH-HHH---------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCE
T ss_pred --------HH-HHH---------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCE
Confidence 00 000 011233455432110 01244566789999998899999
Q ss_pred EEEeCC-CCCCCHHHHHHHHHHHHHH
Q 001270 664 LLLDEP-TSGLDSASSQLLLRALRRE 688 (1111)
Q Consensus 664 LLLDEP-TSGLD~~s~~~Il~~L~~l 688 (1111)
+|+||| ++++|.....++.+..+.+
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhc
Confidence 999999 9999998888777776654
No 155
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.72 E-value=1.4e-11 Score=130.87 Aligned_cols=155 Identities=18% Similarity=0.084 Sum_probs=56.6
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHh-cCCCCCCceeEEEECCeeCCc----ccccccEEEEccCCCCCCCC
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALA-GKAIACKATGLILINGKNEPI----HSYKKIIGFVPQDDIVHGNL 591 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLa-Gl~~~~~~sG~I~inG~~~~~----~~~r~~IgyV~Qd~~l~~~L 591 (1111)
+..+++||++++|++++|+||||||||||+++|+ |+.. + + ..+.+... ......++|++++...+..+
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~--~----~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 87 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN--N----I-VKSVSVTTRAARKGEKEGKDYYFVDREEFLRL 87 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC------C----E-EECCCEESSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC--C----c-ccccccCCCCCCccccCCCeEEEecHHHhhhh
Confidence 4678999999999999999999999999999999 9753 2 1 22222110 00112345777665444333
Q ss_pred CHHHHHHHHHHhhc-cccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH-HHH-HHHhhCCCEEEEeC
Q 001270 592 TVEENLWFHARCRL-SAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRV-HVG-LEMVMEPSLLLLDE 668 (1111)
Q Consensus 592 TV~EnL~f~a~~~~-~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRV-aIA-rALl~~P~lLLLDE 668 (1111)
++.+++........ ....... .++++++. |..-..+-.+. -...-++++ .-+ ..++..|+..++||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~-~~~vild~~~~------g~~~~~~~~~~~~~~v~v~~~~~~~l~~ 156 (231)
T 3lnc_A 88 CSNGEIIEHAEVFGNFYGVPRK----NLEDNVDK-GVSTLLVIDWQ------GAFKFMEMMREHVVSIFIMPPSMEELRR 156 (231)
T ss_dssp HHTTCEEEEEEETTEEEEEECT----THHHHHHH-TCEEEEECCHH------HHHHHHHHSGGGEEEEEEECSCHHHHHH
T ss_pred hhcCceehhhhhccccCCCCHH----HHHHHHHc-CCeEEEEcCHH------HHHHHHHhcCCCeEEEEEECCcHHHHHH
Confidence 33332221000000 0011111 12333433 11111110000 011223333 111 22355667777888
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 001270 669 PTSGLDSASSQLLLRALRREA 689 (1111)
Q Consensus 669 PTSGLD~~s~~~Il~~L~~la 689 (1111)
++.+.|..+...+.+.|++..
T Consensus 157 Rl~~R~~~~~~~i~~rl~~~~ 177 (231)
T 3lnc_A 157 RLCGRRADDSEVVEARLKGAA 177 (231)
T ss_dssp C--------------CHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHH
Confidence 999998888887777776543
No 156
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.72 E-value=1.6e-09 Score=111.26 Aligned_cols=144 Identities=19% Similarity=0.198 Sum_probs=76.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---C------ceeEEEECCeeCCc-----ccccccEEEEccCCCC-CCCCCHHH
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKAIAC---K------ATGLILINGKNEPI-----HSYKKIIGFVPQDDIV-HGNLTVEE 595 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~~~~---~------~sG~I~inG~~~~~-----~~~r~~IgyV~Qd~~l-~~~LTV~E 595 (1111)
.++|+|+||||||||++.|+|...+. + .+|+|.++|++... ....+..++++|.... ...++|.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 68999999999999999999965321 1 47999999975321 1112223333332100 00111211
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001270 596 NLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDS 675 (1111)
Q Consensus 596 nL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~ 675 (1111)
...... ........+++.+... ....-..+++ ..+|..-..+.+.+|++|+.+|+++++| ||+||.
T Consensus 111 ~~~~~s---------~~~~~~~~~~~~~~~~-~~~~i~~v~n--K~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKHLT---------YENVERWLKELRDHAD-SNIVIMLVGN--KSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCHHH---------HHTHHHHHHHHHHHSC-TTCEEEEEEE--CGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCHHH---------HHHHHHHHHHHHHhcC-CCCcEEEEEE--CcccccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 110000 0000000111111100 0000001111 1112222233478899999999999999 999999
Q ss_pred HHHHHHHHHHHHH
Q 001270 676 ASSQLLLRALRRE 688 (1111)
Q Consensus 676 ~s~~~Il~~L~~l 688 (1111)
.+..++++.|.+.
T Consensus 177 ~~v~~l~~~l~~~ 189 (191)
T 1oix_A 177 TNVEAAFQTILTE 189 (191)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988763
No 157
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.71 E-value=8.1e-10 Score=113.99 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=47.9
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccccEEEEccCCCCCCCCCHHHHH
Q 001270 523 TGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKIIGFVPQDDIVHGNLTVEENL 597 (1111)
Q Consensus 523 S~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~IgyV~Qd~~l~~~LTV~EnL 597 (1111)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++..... ...+..++|++|++.+++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56788999999999999999999999999642 46677654321 12356789999987665554544443
No 158
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.69 E-value=1e-11 Score=135.71 Aligned_cols=123 Identities=16% Similarity=0.200 Sum_probs=82.2
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccccEEEEccCCC-CCCCCC
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKIIGFVPQDDI-VHGNLT 592 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~IgyV~Qd~~-l~~~LT 592 (1111)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++. .....+.+++++|+.. ..+.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 4678888889999 89999999999999999999652 689999886531 1123355788888753 556678
Q ss_pred HHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCE
Q 001270 593 VEENLWFHARCRLSA-HLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSL 663 (1111)
Q Consensus 593 V~EnL~f~a~~~~~~-~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~l 663 (1111)
+.|++......+... .....+....+.+++. .|||||+||+.|++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh
Confidence 888885432211100 0001111122222221 2899999999999999999976
No 159
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.68 E-value=2.9e-08 Score=112.95 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCccH-----
Q 001270 649 KRVHVGLEMVME--PSLLLLDEPTSGL----------DS---ASSQLLLRALRRE----ALEGVNICLVVHQPSY----- 704 (1111)
Q Consensus 649 QRVaIArALl~~--P~lLLLDEPTSGL----------D~---~s~~~Il~~L~~l----a~~G~TVIivtHq~~~----- 704 (1111)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.|+++ .+.|.|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888755 9999999999998 33 2222344444444 3459999999996431
Q ss_pred ----------HHHHhcCeEEEEeC
Q 001270 705 ----------ALFRMFDDLVLLAK 718 (1111)
Q Consensus 705 ----------~i~~~~D~vilL~~ 718 (1111)
.+..++|.++.+.+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr 229 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR 229 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEE
Confidence 23456777777765
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.66 E-value=1.4e-11 Score=132.37 Aligned_cols=123 Identities=16% Similarity=0.200 Sum_probs=81.4
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccccEEEEccCCC-CCCCCC
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKIIGFVPQDDI-VHGNLT 592 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~IgyV~Qd~~-l~~~LT 592 (1111)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++. .....+.+++++|+.. ..+.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4677888889999 99999999999999999999652 688999886531 1122355778888743 456677
Q ss_pred HHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCE
Q 001270 593 VEENLWFHARCRLSA-HLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSL 663 (1111)
Q Consensus 593 V~EnL~f~a~~~~~~-~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~l 663 (1111)
+.|++......+... .....+....+.+++. .|||||+||+.|++++..+|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh
Confidence 888884332211100 0011111122333322 2799999999999999999987
No 161
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.62 E-value=9.2e-09 Score=121.54 Aligned_cols=51 Identities=22% Similarity=0.222 Sum_probs=46.6
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE 569 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~ 569 (1111)
..+|++|||+|++ ++++|+|||||||||||++|+|+.. +.+|+|.++|+++
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 3579999999999 9999999999999999999999765 5789999999865
No 162
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.60 E-value=5.4e-10 Score=135.58 Aligned_cols=161 Identities=20% Similarity=0.175 Sum_probs=100.0
Q ss_pred CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCC-------
Q 001270 514 KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDI------- 586 (1111)
Q Consensus 514 ~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~------- 586 (1111)
+...+++++++.+.+|+.+.|+||||+|||||+++|++.... ...|.+.+++.+.+ .....++++|+...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~--~~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPED--ENMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTC--TTSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCccc--ccCCcEEEEecchHHHHHHHH
Confidence 456788999999999999999999999999999999997653 33488988886543 23456889887531
Q ss_pred ---------------CCCCCCHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 001270 587 ---------------VHGNLTVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRV 651 (1111)
Q Consensus 587 ---------------l~~~LTV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRV 651 (1111)
.+..+++.+|+................ ....-+.+|.-+..... ..++|+|++|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~----~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDAT----GAHAGALLGDVRHDPFQ-----SGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECT----TCCHHHHHCEECCCCC---------CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcC----CCCHHhcCceEEechhh-----cCCccccccccc
Confidence 111111111111000000000000000 00011112221111111 135899999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001270 652 HVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRR 687 (1111)
Q Consensus 652 aIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~ 687 (1111)
..++....++.+|||||... |++.....+++.|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899988888888864
No 163
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.60 E-value=2.2e-08 Score=111.47 Aligned_cols=138 Identities=18% Similarity=0.180 Sum_probs=82.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhcc
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLS 606 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~ 606 (1111)
.+|++++|+|+||+||||+++.|++.+. +.+| +++.++.+|.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM--LEKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH--HTTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH--HhcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 4799999999999999999999999653 1234 34677777652 335556554322
Q ss_pred ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001270 607 AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALR 686 (1111)
Q Consensus 607 ~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~ 686 (1111)
+.+|+.-. . ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----~------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----V------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----B------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----e------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11233211 0 0122 33455555 45999999999 99999876654444433
Q ss_pred HHH---hCCCEEEE-EecCccHHHHHhcCeEEEEeCCcE
Q 001270 687 REA---LEGVNICL-VVHQPSYALFRMFDDLVLLAKGGL 721 (1111)
Q Consensus 687 ~la---~~G~TVIi-vtHq~~~~i~~~~D~vilL~~GG~ 721 (1111)
-+. ..+.++++ ++|... ++.+.++++..+..+|.
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~gi 244 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQY 244 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEE
Confidence 222 11333333 378754 35566666555555543
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.46 E-value=5.1e-09 Score=112.47 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=50.0
Q ss_pred eEEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc--------
Q 001270 500 IEVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-------- 571 (1111)
Q Consensus 500 i~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------- 571 (1111)
..|+++|++..+. . ++++.+ ++++|+|||||||||||++|+|++. +.+|+|.++|.++..
T Consensus 8 ~~l~l~~~~~~~~--~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~ 75 (227)
T 1qhl_A 8 RSLTLINWNGFFA--R-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDK 75 (227)
T ss_dssp EEEEEEEETTEEE--E-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC-----------------
T ss_pred eEEEEEeeecccC--C-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCcccccc
Confidence 4688888866551 1 566666 8999999999999999999999765 578999999976511
Q ss_pred ---ccccccEEEEccC
Q 001270 572 ---HSYKKIIGFVPQD 584 (1111)
Q Consensus 572 ---~~~r~~IgyV~Qd 584 (1111)
...+..++||+|+
T Consensus 76 ~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 76 GLHGKLKAGVCYSMLD 91 (227)
T ss_dssp -CGGGBCSSEEEEEEE
T ss_pred chhhHhhcCcEEEEEe
Confidence 1235679999984
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.43 E-value=1.2e-07 Score=97.65 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001270 651 VHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREA 689 (1111)
Q Consensus 651 VaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la 689 (1111)
...|++|+.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887654
No 166
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.41 E-value=3.8e-10 Score=129.69 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=84.1
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCC-CCCCCCHH
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDI-VHGNLTVE 594 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~-l~~~LTV~ 594 (1111)
..+|+++++.+++|++++|+||||||||||+++|+|. .+|++..-+.+ ...+...+|++||... ++++++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~-----~~g~~~~~~~~--~~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL-----CGGKALNVNLP--LDRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH-----HCCEEECCSSC--TTTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh-----cCCcEEEEecc--chhHHHHHHHhcchhHHHHHHHHHH
Confidence 3589999999999999999999999999999999993 45777652211 1122234778888764 23333322
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHH---cCCCc-cc---ccc--cc--CccCCCCCHHHHHHHHHHHHHhhCCCE
Q 001270 595 ENLWFHARCRLSAHLAKADKVLVIERVIDT---LGLQT-VR---DSL--VG--TVEKRGISGGQRKRVHVGLEMVMEPSL 663 (1111)
Q Consensus 595 EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~---LGL~~-~~---d~~--vg--~~~~rgLSGGQrQRVaIArALl~~P~l 663 (1111)
.++. .+.... ........+.+.++. +.+.. .. +.. .+ +.....+++|++||+..+.+++.+|++
T Consensus 229 ~~~~----r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 229 GGES----RDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TTTT----TTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HHHH----hhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 2110 000000 000001122333321 00110 00 000 00 011234899999999998888999999
Q ss_pred EE-EeCCCC
Q 001270 664 LL-LDEPTS 671 (1111)
Q Consensus 664 LL-LDEPTS 671 (1111)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 88 999997
No 167
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.40 E-value=6.7e-08 Score=110.26 Aligned_cols=72 Identities=24% Similarity=0.281 Sum_probs=48.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeE-EEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHH
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGL-ILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLW 598 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~-I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~ 598 (1111)
-+++|+++.|.||+|+|||||+..+++... +..|. +++++.......+.+++|+.+|+..+....++.+.+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~ 129 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALE 129 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHH
Confidence 489999999999999999999999998432 23354 4666654322234455677776655444456555443
No 168
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.34 E-value=2e-08 Score=104.23 Aligned_cols=58 Identities=28% Similarity=0.259 Sum_probs=40.6
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc--cccccEEEEccCCC
Q 001270 523 TGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH--SYKKIIGFVPQDDI 586 (1111)
Q Consensus 523 S~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~--~~r~~IgyV~Qd~~ 586 (1111)
.+..++|++++|+||||||||||+++|++.+ |.+.++|.++... ..+..+|+++|+..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcc
Confidence 3566799999999999999999999999943 8899988764321 11234677877643
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.33 E-value=8.3e-08 Score=109.79 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=86.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---------CCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH---HHH
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKAIA---------CKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEE---NLW 598 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~~~---------~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~E---nL~ 598 (1111)
+++|+|++|||||||+|.|+|.... .+..|.|.++|.++. +....|++.+.+. ..|.. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHHHHHH
Confidence 4999999999999999999996531 146799999986532 2233555554321 11211 111
Q ss_pred HHHH--hh---ccc-cch--HHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH----HHH-hhCCCEEE
Q 001270 599 FHAR--CR---LSA-HLA--KADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVG----LEM-VMEPSLLL 665 (1111)
Q Consensus 599 f~a~--~~---~~~-~~~--~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIA----rAL-l~~P~lLL 665 (1111)
.... .. .+. ... ..+....+.++++.+++.+..--.+.+ ...-+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 0000 00 000 111 122233456778888775443111111 1122688889988887 555 334454
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh
Q 001270 666 LDEPTSGLDSASSQLLLRALRREAL 690 (1111)
Q Consensus 666 LDEPTSGLD~~s~~~Il~~L~~la~ 690 (1111)
+|+|++|......+++.|.++..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988653
No 170
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.15 E-value=1.7e-06 Score=98.11 Aligned_cols=60 Identities=10% Similarity=0.150 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCcc
Q 001270 642 GISGGQRKRVHVGLEMVMEPSLLLLD-EPTSGLDSASSQLLLRALRREALEGVNICLVV--HQPS 703 (1111)
Q Consensus 642 gLSGGQrQRVaIArALl~~P~lLLLD-EPTSGLD~~s~~~Il~~L~~la~~G~TVIivt--Hq~~ 703 (1111)
.+|+||+|++. +.+...++-|+++| +|+.++|......+++.+.++.. +..+|++. ||+.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 48999999887 66666788889999 99999999998888887776543 77888888 7754
No 171
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.09 E-value=1.7e-07 Score=102.01 Aligned_cols=52 Identities=23% Similarity=0.375 Sum_probs=35.7
Q ss_pred EEEEEeE-EEEEcCCcceeEeeeEEEEeC---CeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 501 EVSFKDL-TLTLKGKNKHLLRCVTGKIRP---GRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 501 ~L~~~nL-s~~y~~~~k~IL~~VS~~I~~---GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.|+++|| +++|. +.+.+|+|+||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~-~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD-EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec-CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999 99993 345799999999999 9999999999999999999999843
No 172
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.09 E-value=1.8e-06 Score=102.04 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCcc
Q 001270 645 GGQRKRVHVGLEMVMEPSLLLLDEP----------TSGLDSASSQLLLRALRREA----LEGVNICLVVHQPS 703 (1111)
Q Consensus 645 GGQrQRVaIArALl~~P~lLLLDEP----------TSGLD~~s~~~Il~~L~~la----~~G~TVIivtHq~~ 703 (1111)
|++++|..+++|....|.|||+||+ +.|.|......+.++|..+- ..+..||.+||+++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6788888999999999999999999 44677777666777776653 24678899999975
No 173
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.07 E-value=1.7e-06 Score=98.07 Aligned_cols=128 Identities=12% Similarity=0.215 Sum_probs=80.9
Q ss_pred eEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHH
Q 001270 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENL 597 (1111)
Q Consensus 518 IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL 597 (1111)
-|+.+.+-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.= .++..+-+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g---------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DD---------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEeC------CCCHHHHH
Confidence 3555555689999999999999999999988876321 0 11 12333321 23433322
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 001270 598 WFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSAS 677 (1111)
Q Consensus 598 ~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s 677 (1111)
. ++......+++....+ | .||+++.+|+..|...+.+++++|.|+|...+
T Consensus 91 ~------------------Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si---- 140 (338)
T 4a1f_A 91 L------------------RALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI---- 140 (338)
T ss_dssp H------------------HHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH----
T ss_pred H------------------HHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH----
Confidence 1 1111111112222211 2 39999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHh-C-CCEEEEEec
Q 001270 678 SQLLLRALRREAL-E-GVNICLVVH 700 (1111)
Q Consensus 678 ~~~Il~~L~~la~-~-G~TVIivtH 700 (1111)
.+|...++++.+ . |..+|+|-|
T Consensus 141 -~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 -EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHHHHHHHHHHHhcCCCCEEEEec
Confidence 356666776654 3 677777755
No 174
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.07 E-value=1.3e-06 Score=88.50 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=31.4
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC
Q 001270 520 RCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAI 554 (1111)
Q Consensus 520 ~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~ 554 (1111)
+++++.+.+| +++|+||||||||||+++|.+++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 7899999999 999999999999999999998654
No 175
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.06 E-value=2.9e-06 Score=105.93 Aligned_cols=73 Identities=21% Similarity=0.200 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCccHHHHHhcCeEEEE
Q 001270 643 ISGGQRKRVHVGLEMVMEPSLLLLDEPTS-GLDSASSQLLLRALRREALEGVNICLV-VHQPSYALFRMFDDLVLL 716 (1111)
Q Consensus 643 LSGGQrQRVaIArALl~~P~lLLLDEPTS-GLD~~s~~~Il~~L~~la~~G~TVIiv-tHq~~~~i~~~~D~vilL 716 (1111)
+|.|+.+|..++..++.++++||+|||.. +||......+++.+.......++|+++ ||+++ .+.+++++..++
T Consensus 191 ~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred ECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 79999999999999999999999999996 999887777776666544445677775 88865 455677754444
No 176
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.05 E-value=5.1e-07 Score=93.58 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=70.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhccccch
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLSAHLA 610 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~~~~~ 610 (1111)
+++|+|+|||||||+.+.|+++ |...+++.+. .+.+. + +. .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-------g~~~id~d~~-----~~~~~---~-----~~-----------------~-- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-------GVPLVDADVV-----AREVV---A-----KD-----------------S-- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-------TCCEEEHHHH-----HHHTT---C-----SS-----------------C--
T ss_pred EEEEECCCCCCHHHHHHHHHHC-------CCcccchHHH-----HHHHc---c-----CC-----------------h--
Confidence 6899999999999999999982 3333433211 00000 0 00 0
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001270 611 KADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREAL 690 (1111)
Q Consensus 611 ~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~ 690 (1111)
..+.++.+.+|.... .+.|+.+|..++..+..+|+.+.++ ++.++|.....+.+.+...
T Consensus 45 -----~~~~~i~~~~g~~~~------------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-- 103 (206)
T 1jjv_A 45 -----PLLSKIVEHFGAQIL------------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-- 103 (206)
T ss_dssp -----HHHHHHHHHHCTTCC------------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--
T ss_pred -----HHHHHHHHHhCHHHh------------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--
Confidence 012344555564321 3678999999999888888654333 3345566555554444322
Q ss_pred CCCEEEEEecCccHH-HHHhcCeEEEEe
Q 001270 691 EGVNICLVVHQPSYA-LFRMFDDLVLLA 717 (1111)
Q Consensus 691 ~G~TVIivtHq~~~~-i~~~~D~vilL~ 717 (1111)
.+.+||+.+|.+... +...+|.+++|.
T Consensus 104 ~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 104 TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 356888888876432 135677776664
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.04 E-value=1.3e-06 Score=89.87 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=26.4
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCCC
Q 001270 524 GKIRPGRITAVMGPSGAGKTTFLSALAGKAI 554 (1111)
Q Consensus 524 ~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~ 554 (1111)
++|++|++++|+||||||||||+++|+++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3678999999999999999999999999763
No 178
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.99 E-value=1e-07 Score=98.95 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=42.5
Q ss_pred eEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEE--EECCeeC
Q 001270 506 DLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLI--LINGKNE 569 (1111)
Q Consensus 506 nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I--~inG~~~ 569 (1111)
|++... +.....+.+++..++|++++|+||||||||||+++|++++. ..|.+ +++|.++
T Consensus 4 ~~~~~~--~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 4 NIKWHE--CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp --------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred CCcccc--cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 444433 33445677777788999999999999999999999999653 45777 8887654
No 179
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.94 E-value=2.9e-06 Score=104.23 Aligned_cols=133 Identities=18% Similarity=0.105 Sum_probs=78.7
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCC---cccccccEEEEccCCCCCCCCCHHHHHHH
Q 001270 523 TGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEP---IHSYKKIIGFVPQDDIVHGNLTVEENLWF 599 (1111)
Q Consensus 523 S~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~---~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f 599 (1111)
++.+++|+.++|+|++|+|||||++.|++........|+| .+|.... ....++.|++.+|...+... ++..|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~n--- 77 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVF--- 77 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEE---
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEE---
Confidence 4567889999999999999999999999754332356777 5564432 12234566776665443321 11111
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 001270 600 HARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQ 679 (1111)
Q Consensus 600 ~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~ 679 (1111)
..|+ +|. ..++ .......-..+.-++++| |+.|+|+.+..
T Consensus 78 ------------------------------liDT-pG~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 78 ------------------------------LLDA-PGY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ------------------------------EEEC-CCS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ------------------------------EEeC-CCc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 1111 111 0011 111222235678899999 99999988763
Q ss_pred HHHHHHHHHHhCCCEEEEEecCccH
Q 001270 680 LLLRALRREALEGVNICLVVHQPSY 704 (1111)
Q Consensus 680 ~Il~~L~~la~~G~TVIivtHq~~~ 704 (1111)
.++.+...+..+|++.|..+.
T Consensus 118 ----~~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 ----AWTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp ----HHHHHHHTTCCEEEEEECGGG
T ss_pred ----HHHHHHHccCCEEEEecCCch
Confidence 333333468889999998764
No 180
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.93 E-value=2.7e-07 Score=110.99 Aligned_cols=43 Identities=33% Similarity=0.477 Sum_probs=35.6
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCcee-EEE-ECCeeC
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG-LIL-INGKNE 569 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG-~I~-inG~~~ 569 (1111)
.+++|++++|+|+||||||||+++|+|++. +.+| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~--~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM--EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH--TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc--ccCCceEEEECCcHH
Confidence 477999999999999999999999999764 3555 674 888653
No 181
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.91 E-value=8.4e-07 Score=95.89 Aligned_cols=57 Identities=25% Similarity=0.265 Sum_probs=46.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHh---cCCCCCCceeEEE--------ECCeeCC----cccccccEEEEccCC
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALA---GKAIACKATGLIL--------INGKNEP----IHSYKKIIGFVPQDD 585 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLa---Gl~~~~~~sG~I~--------inG~~~~----~~~~r~~IgyV~Qd~ 585 (1111)
++|++++|+|||||||||++++|+ |+.. +++|.|. .+|.++. ...+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 8653 5789998 8887652 224567899999864
No 182
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.90 E-value=3e-08 Score=117.79 Aligned_cols=128 Identities=17% Similarity=0.196 Sum_probs=81.8
Q ss_pred eEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcc---cccccEEEEccCCC-CCCCCCH
Q 001270 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIH---SYKKIIGFVPQDDI-VHGNLTV 593 (1111)
Q Consensus 518 IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~---~~r~~IgyV~Qd~~-l~~~LTV 593 (1111)
+++++++.+++| +.|+||||+|||||+++|++.. ..+.|.++|.+.... ...+.+..++|... ..+.+.+
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~----~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA----RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT----TCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh----CCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 456677778888 8999999999999999999954 257899988664211 12344667777653 3445556
Q ss_pred HHHHHHHHHhhccc-cchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001270 594 EENLWFHARCRLSA-HLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS 671 (1111)
Q Consensus 594 ~EnL~f~a~~~~~~-~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTS 671 (1111)
.|++......+... .....+....+.+++. .|||||+|+..|+++...+|++ |||+..
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 66663221111100 0011222223333332 1788888999999999999987 888864
No 183
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.88 E-value=1.7e-06 Score=97.23 Aligned_cols=77 Identities=18% Similarity=0.134 Sum_probs=54.9
Q ss_pred EeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc-------ccc-----cccEEEE-ccCC
Q 001270 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI-------HSY-----KKIIGFV-PQDD 585 (1111)
Q Consensus 519 L~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~-------~~~-----r~~IgyV-~Qd~ 585 (1111)
+++++|.+++|++++|+|+||+||||++..|++.+. +..|+|.+.+.+... ..+ +..++++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 467888889999999999999999999999999654 357899987766421 122 5678999 6764
Q ss_pred CCCCCCCHHHHH
Q 001270 586 IVHGNLTVEENL 597 (1111)
Q Consensus 586 ~l~~~LTV~EnL 597 (1111)
...+..++.+++
T Consensus 173 ~~~p~~~~~~~l 184 (320)
T 1zu4_A 173 NADPASVVFDAI 184 (320)
T ss_dssp TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 444333333333
No 184
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.85 E-value=2.6e-06 Score=87.35 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCCC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGKAI 554 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl~~ 554 (1111)
|++++|+||||||||||+++|+|+..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999763
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.85 E-value=2.3e-05 Score=88.89 Aligned_cols=159 Identities=13% Similarity=0.150 Sum_probs=81.0
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCc---ccccccEEEEccCCCC-CCCC-
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPI---HSYKKIIGFVPQDDIV-HGNL- 591 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~---~~~r~~IgyV~Qd~~l-~~~L- 591 (1111)
.+|++++++++ .++|+|++||||||||+.|.|.......+|.++-.+..+.. ..-....+...+.+.. +.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFA 101 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHH
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHH
Confidence 57889999987 89999999999999999999954322344544333322110 0011233333333211 1110
Q ss_pred CHHHHHHHHHHhhccccchHHHHHHHHHHHHHHcCC----C----------------ccccccccCcc---CCCCCHHHH
Q 001270 592 TVEENLWFHARCRLSAHLAKADKVLVIERVIDTLGL----Q----------------TVRDSLVGTVE---KRGISGGQR 648 (1111)
Q Consensus 592 TV~EnL~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL----~----------------~~~d~~vg~~~---~rgLSGGQr 648 (1111)
.+.+.+. ++.....|- . ...|+ +|-.. ....++.++
T Consensus 102 ~v~~~i~--------------------~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDt-PG~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 102 AVRKEIQ--------------------DETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDL-PGLTKVAVDGQSDSIVK 160 (360)
T ss_dssp HHHHHHH--------------------HHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEEC-CCBCSSCCTTCCSSHHH
T ss_pred HHHHHHH--------------------HHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEEC-CCCCcCCcCCCchhHHH
Confidence 1111111 011111110 0 01111 12100 012567889
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 001270 649 KRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALRREALEG-VNICLVVH 700 (1111)
Q Consensus 649 QRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G-~TVIivtH 700 (1111)
++..+++..+.+|+++||.-..+..|... ...+++++.+...| .+|++++.
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 99999999999999888874334445443 44556666655455 46666665
No 186
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=7.3e-06 Score=84.86 Aligned_cols=40 Identities=25% Similarity=0.044 Sum_probs=24.4
Q ss_pred CcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 514 KNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 514 ~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
+...+++||||++++|++++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456899999999999999999999999999999999743
No 187
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.73 E-value=1.3e-06 Score=88.05 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=31.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE 569 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~ 569 (1111)
.+|++++|+|+||||||||++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 469999999999999999999999842 7788887554
No 188
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.72 E-value=2.6e-07 Score=104.04 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=29.5
Q ss_pred eeEeeeEEEEeCCe------EEEEEcCCCCCHHHHHHHHhcCCC
Q 001270 517 HLLRCVTGKIRPGR------ITAVMGPSGAGKTTFLSALAGKAI 554 (1111)
Q Consensus 517 ~IL~~VS~~I~~Ge------ivaIiGpSGSGKSTLLkiLaGl~~ 554 (1111)
..|++++..+..++ ++||+||||||||||+++|.+++.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34555555555554 999999999999999999999653
No 189
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.70 E-value=5.8e-05 Score=84.69 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=35.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCcc
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREAL---EGVNICLVVHQPS 703 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~---~G~TVIivtHq~~ 703 (1111)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888876655 5788999999875
No 190
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.66 E-value=0.00013 Score=82.46 Aligned_cols=140 Identities=19% Similarity=0.146 Sum_probs=74.8
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q 001270 524 GKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARC 603 (1111)
Q Consensus 524 ~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~ 603 (1111)
+-+++|+++.|.||+|+|||||+..|+.........| | ....+.|+.-+..+ ....-.......
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g-------~~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y-------PGGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B-------CCCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C-------CCCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 3589999999999999999999999887321101000 0 01224444333221 122111111111
Q ss_pred hccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH-HHHHHHHHHHHh----hCCCEEEEeCCCCCCCHH--
Q 001270 604 RLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGG-QRKRVHVGLEMV----MEPSLLLLDEPTSGLDSA-- 676 (1111)
Q Consensus 604 ~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGG-QrQRVaIArALl----~~P~lLLLDEPTSGLD~~-- 676 (1111)
.+. .+++++.+-+. +..++. +.+.+..++.++ .+++++++|+.++-++..
T Consensus 181 ----g~~-------~~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 181 ----NVD-------HDAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp ----TCC-------HHHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred ----CCC-------HHHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 111 11223322110 012332 335555666666 579999999999866432
Q ss_pred ----------HHHHHHHHHHHHHhC-CCEEEEEecCc
Q 001270 677 ----------SSQLLLRALRREALE-GVNICLVVHQP 702 (1111)
Q Consensus 677 ----------s~~~Il~~L~~la~~-G~TVIivtHq~ 702 (1111)
....+++.|++++++ |.+||++.|-.
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 134556666666654 88888887753
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.65 E-value=0.0002 Score=78.16 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCc---cHHH
Q 001270 644 SGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSA----------SSQLLLRALRREAL----EGVNICLVVHQP---SYAL 706 (1111)
Q Consensus 644 SGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~----------s~~~Il~~L~~la~----~G~TVIivtHq~---~~~i 706 (1111)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.+|+++ ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 457777778888888899999999998776532 22234444433211 234567778864 3444
Q ss_pred HHhcCeEEEE
Q 001270 707 FRMFDDLVLL 716 (1111)
Q Consensus 707 ~~~~D~vilL 716 (1111)
.+.|++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4556655444
No 192
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.62 E-value=1.3e-05 Score=85.07 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=33.3
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCee
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN 568 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~ 568 (1111)
..++|++++|+|+||||||||+++|+|+ .|+|.+.+++
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecC
Confidence 3578999999999999999999999994 4788888865
No 193
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.58 E-value=2.8e-05 Score=79.32 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEE
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILI 564 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~i 564 (1111)
+|++++|+||||||||||++.|++.... ...|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 7899999999999999999999996531 24565544
No 194
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.55 E-value=0.00025 Score=79.36 Aligned_cols=140 Identities=21% Similarity=0.199 Sum_probs=75.0
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q 001270 524 GKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARC 603 (1111)
Q Consensus 524 ~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~ 603 (1111)
+-+++|+++.|.||+|+|||||+..|+.........| | ....+.|+.-+..+ ...+-.......
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g-------~~~~vlyi~~e~~~----~~~~l~~~~~~~ 165 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----G-------LSGKAVYIDTEGTF----RWERIENMAKAL 165 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----C-------CSCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----C-------CCCeEEEEECCCCC----CHHHHHHHHHHh
Confidence 3589999999999999999999998886321110000 0 01224444333221 111111111111
Q ss_pred hccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH-HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH----
Q 001270 604 RLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGG-QRKRVHVGLEMV---MEPSLLLLDEPTSGLDS---- 675 (1111)
Q Consensus 604 ~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGG-QrQRVaIArALl---~~P~lLLLDEPTSGLD~---- 675 (1111)
+... +++++.+ .+. +..++. +.+.+..+++++ .+|+++++|+.++-++.
T Consensus 166 ----g~~~-------~~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 166 ----GLDI-------DNVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp ----TCCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred ----CCCH-------HHHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 1110 1122211 111 113333 345677788888 67999999999976532
Q ss_pred ----HH----HHHHHHHHHHHHhC-CCEEEEEecCc
Q 001270 676 ----AS----SQLLLRALRREALE-GVNICLVVHQP 702 (1111)
Q Consensus 676 ----~s----~~~Il~~L~~la~~-G~TVIivtHq~ 702 (1111)
.. ...+++.|++++++ +.+||++.|-.
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 11 24455566666654 88888887753
No 195
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.47 E-value=5.2e-05 Score=84.68 Aligned_cols=131 Identities=11% Similarity=0.167 Sum_probs=80.1
Q ss_pred eEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHH
Q 001270 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENL 597 (1111)
Q Consensus 518 IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL 597 (1111)
-|+.+.+-+++|+++.|.|++|+|||||+.-++.... .. | ..+.|+.=+ ++..+-+
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~~------g---------~~vl~~slE------~s~~~l~ 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---DN------D---------DVVNLHSLE------MGKKENI 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---TT------T---------CEEEEEESS------SCHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---Hc------C---------CeEEEEECC------CCHHHHH
Confidence 3555555689999999999999999999988875211 01 1 124443321 3433322
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 001270 598 WFHARCRLSAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSAS 677 (1111)
Q Consensus 598 ~f~a~~~~~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s 677 (1111)
.- +......+.+.+..+.. ..||+++++|+..|...+.++++++.|+|...
T Consensus 113 ~R------------------~~~~~~~i~~~~l~~~~------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~----- 163 (315)
T 3bh0_A 113 KR------------------LIVTAGSINAQKIKAAR------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS----- 163 (315)
T ss_dssp HH------------------HHHHHTTCCHHHHHSCH------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----
T ss_pred HH------------------HHHHHcCCCHHHHhcCC------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----
Confidence 11 11111111111111110 12899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHhC-CCE--EEEEecC
Q 001270 678 SQLLLRALRREALE-GVN--ICLVVHQ 701 (1111)
Q Consensus 678 ~~~Il~~L~~la~~-G~T--VIivtHq 701 (1111)
..++.+.++++.++ |.. +|+|-|-
T Consensus 164 ~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 164 VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 34466667776554 666 7777663
No 196
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.45 E-value=6.8e-05 Score=77.69 Aligned_cols=29 Identities=24% Similarity=0.278 Sum_probs=26.4
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.+++|++++|+|++|||||||++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999954
No 197
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.39 E-value=7.6e-05 Score=77.98 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=25.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCCC
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKAI 554 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~~ 554 (1111)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999753
No 198
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.37 E-value=0.00013 Score=85.16 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=38.1
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 001270 659 MEPSLLLLDEPTSGLDS-ASSQLLLRALRREALEGVNICLVVHQPS 703 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~-~s~~~Il~~L~~la~~G~TVIivtHq~~ 703 (1111)
.+|++||+||+..-.+. .++..++..+..+...|+.||+++|.+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 48999999999887764 6778888999888878899999999854
No 199
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.35 E-value=0.0002 Score=79.47 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEecCc
Q 001270 643 ISGGQRKRVHVGLEMV--MEPSLLLLDEPTSGLDSAS-SQLLLRALRREALE-GV--NICLVVHQP 702 (1111)
Q Consensus 643 LSGGQrQRVaIArALl--~~P~lLLLDEPTSGLD~~s-~~~Il~~L~~la~~-G~--TVIivtHq~ 702 (1111)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++++. |. .+.+++|+-
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 898886 5566666 78999999 7888876 66777888887654 43 444455543
No 200
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.32 E-value=0.00029 Score=82.34 Aligned_cols=26 Identities=35% Similarity=0.258 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
++.+++++|++|+||||++..|++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999854
No 201
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.31 E-value=3.9e-05 Score=79.68 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=32.6
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCee
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN 568 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~ 568 (1111)
.++|++++|+|+||||||||++.|++.+. +..|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccC
Confidence 46899999999999999999999999653 245777665543
No 202
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.28 E-value=5.4e-05 Score=84.46 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.+..+.|.||+|+|||||++.+++..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999843
No 203
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.15 E-value=0.00011 Score=78.06 Aligned_cols=152 Identities=14% Similarity=0.093 Sum_probs=75.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhcc
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLS 606 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~ 606 (1111)
..|+.++|.||+||||||++.++..... ...| ....++.+.+.+......++.+++.........
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~--~~~~-------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDF--IQND-------------RAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHH--HHTT-------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcch--hhcC-------------CCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 4689999999999999999887754110 0000 012355666665433333444444321100000
Q ss_pred ccchHHHHHHHHHHHHHHcCCCcccccccc--CccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHH
Q 001270 607 AHLAKADKVLVIERVIDTLGLQTVRDSLVG--TVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTS-GLDSASSQLLLR 683 (1111)
Q Consensus 607 ~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg--~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTS-GLD~~s~~~Il~ 683 (1111)
..+|.....+.... ....--.+.|.-.+.. ...+.+-+++++||.-. ++|......+++
T Consensus 139 ----------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 139 ----------------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp ----------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred ----------------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 00111000001000 0000002556666653 33588999999999976 687766644544
Q ss_pred HHHHHHhCCCEEEEEecCccHHHHHhcC
Q 001270 684 ALRREALEGVNICLVVHQPSYALFRMFD 711 (1111)
Q Consensus 684 ~L~~la~~G~TVIivtHq~~~~i~~~~D 711 (1111)
.+.....+-++++++.--+...+.++++
T Consensus 201 ~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 201 DVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred HHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 4443322234555554333333444544
No 204
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.07 E-value=0.00043 Score=76.44 Aligned_cols=28 Identities=32% Similarity=0.602 Sum_probs=24.5
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
+.++..+.|.||+|+|||||+++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4567789999999999999999999843
No 205
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.07 E-value=0.00026 Score=70.63 Aligned_cols=31 Identities=26% Similarity=0.519 Sum_probs=25.2
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 520 RCVTGKIRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 520 ~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
++.++.+.+| +++|+|||||||||||++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455566665 999999999999999999873
No 206
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.06 E-value=0.0002 Score=71.50 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.|++++|+|+||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999999954
No 207
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.05 E-value=0.00023 Score=74.80 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=25.6
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
..+|++++|+||||||||||++.|.+..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999999999865
No 208
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.02 E-value=0.00058 Score=79.59 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC----------CCCceeEEEECCeeC---CcccccccEEEEccCCCCCCCCCHHHH
Q 001270 530 RITAVMGPSGAGKTTFLSALAGKAI----------ACKATGLILINGKNE---PIHSYKKIIGFVPQDDIVHGNLTVEEN 596 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl~~----------~~~~sG~I~inG~~~---~~~~~r~~IgyV~Qd~~l~~~LTV~En 596 (1111)
-.++|+|+||+|||||+|.|+|... ..+..|.+.++|++. +....++..++.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3689999999999999999999642 114568999999753 222334445555555444443344444
Q ss_pred H
Q 001270 597 L 597 (1111)
Q Consensus 597 L 597 (1111)
+
T Consensus 261 i 261 (439)
T 1mky_A 261 I 261 (439)
T ss_dssp H
T ss_pred H
Confidence 3
No 209
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.98 E-value=0.0056 Score=71.43 Aligned_cols=153 Identities=17% Similarity=0.226 Sum_probs=81.6
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHH
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEEN 596 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~En 596 (1111)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++..... ..| ..+.|+.=+ ++..+-
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g---------------~~vl~~slE------~~~~~l 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL--KEG---------------VGVGIYSLE------MPAAQL 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTC---------------CCEEEEESS------SCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCC---------------CeEEEEECC------CCHHHH
Confidence 346666667999999999999999999999888763210 011 012222111 122111
Q ss_pred HHH--HHHhhc------cccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHh--hCCCEEEE
Q 001270 597 LWF--HARCRL------SAHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMV--MEPSLLLL 666 (1111)
Q Consensus 597 L~f--~a~~~~------~~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl--~~P~lLLL 666 (1111)
..- ...... ...+...+ ..++.+.++.+.-... .+.+ ..++|..+. .+.++.+. .+++++++
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l---~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPI---YIDD--TPDLTLMEV--RARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCE---EEEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCE---EEEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEE
Confidence 100 000000 00122221 1223333333321111 1111 124677665 34556665 48999999
Q ss_pred eCCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEec
Q 001270 667 DEPTSGLDS----------ASSQLLLRALRREALE-GVNICLVVH 700 (1111)
Q Consensus 667 DEPTSGLD~----------~s~~~Il~~L~~la~~-G~TVIivtH 700 (1111)
|..+.-.+. .....+.+.|+.++++ +.+||+++|
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 998764432 1234677778888765 899999988
No 210
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.88 E-value=0.0057 Score=64.68 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=29.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecC
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREAL--EGVNICLVVHQ 701 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~--~G~TVIivtHq 701 (1111)
.+++++|+..+.+.++......+..+++.+.. ...++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 47899999999888888665555444443322 13578888883
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.83 E-value=0.0006 Score=85.53 Aligned_cols=29 Identities=34% Similarity=0.597 Sum_probs=26.3
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.+++|+.+.|+||||+|||||+++|++..
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 36788999999999999999999999964
No 212
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.79 E-value=0.00011 Score=84.66 Aligned_cols=51 Identities=24% Similarity=0.375 Sum_probs=45.4
Q ss_pred EEEEEeEEEEEcCCcceeEe--------------eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 501 EVSFKDLTLTLKGKNKHLLR--------------CVTGKIRPGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~--------------~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.+.|+||++.|+. .+.+|+ |+.+.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~-er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHAN-SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCC-SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCC-CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 3678999999974 466888 89999999999999999999999999999874
No 213
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.76 E-value=3.5e-05 Score=87.81 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=41.7
Q ss_pred EEEEEeEEEEEcCCcceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEE
Q 001270 501 EVSFKDLTLTLKGKNKHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGF 580 (1111)
Q Consensus 501 ~L~~~nLs~~y~~~~k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~Igy 580 (1111)
.+.++||+..+ +.+.++++++++| +|+|++|+|||||++.|.|... ...|.+..++.......-.....+
T Consensus 17 ~v~~~~l~~~~--~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~--~~~~~~~~~~~~~~~ti~~~~~~~ 86 (361)
T 2qag_A 17 YVGFANLPNQV--HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL--YPERVIPGAAEKIERTVQIEASTV 86 (361)
T ss_dssp ----CCHHHHH--HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------------CEEEEEEEE
T ss_pred eEEeccchHHh--CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC--CCCCcccCCCcccCCceeEEEEEE
Confidence 36677777666 3456889999887 9999999999999999988532 233444433332211101122344
Q ss_pred EccCCCCCCCCCHHHHHHH
Q 001270 581 VPQDDIVHGNLTVEENLWF 599 (1111)
Q Consensus 581 V~Qd~~l~~~LTV~EnL~f 599 (1111)
..|.......+++.|+.-+
T Consensus 87 ~~~~~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 87 EIEERGVKLRLTVVDTPGY 105 (361)
T ss_dssp C----CEEEEEEEEC----
T ss_pred EeecCCcccceEEEEeccc
Confidence 4444333223455555444
No 214
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.68 E-value=9.9e-05 Score=83.32 Aligned_cols=49 Identities=27% Similarity=0.291 Sum_probs=38.9
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECC
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILING 566 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG 566 (1111)
+.+++++++.+.+|.+++|+|++|+|||||++.|++... +..|+|.+-+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~--~~~~~v~v~~ 91 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI--REGLKVAVIA 91 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEe
Confidence 457788888889999999999999999999999998543 2345555443
No 215
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.65 E-value=0.002 Score=64.54 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999853
No 216
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.59 E-value=0.0014 Score=67.19 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 001270 530 RITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl 552 (1111)
..+.|.||+|+|||||++.|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999874
No 217
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.59 E-value=0.00088 Score=71.45 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=25.9
Q ss_pred EeeeEEEEe---CCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 519 LRCVTGKIR---PGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 519 L~~VS~~I~---~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
|.++++.+. +|.+++|.|++||||||+++.|+..+
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 556666665 89999999999999999999999855
No 218
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.58 E-value=0.00098 Score=69.49 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=40.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCCC-CCCceeEEEE--------CCeeCCc----ccccccEEEEccCC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKAI-ACKATGLILI--------NGKNEPI----HSYKKIIGFVPQDD 585 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~~-~~~~sG~I~i--------nG~~~~~----~~~r~~IgyV~Qd~ 585 (1111)
.+.+++|+|||||||||+.++|++.+. +..++|+|.. +|.++.. ..+++.+|+++|++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 356899999999999999999998531 1245677766 5654321 23456788888864
No 219
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.57 E-value=0.0011 Score=69.44 Aligned_cols=30 Identities=27% Similarity=0.538 Sum_probs=24.9
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 521 CVTGKIRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 521 ~VS~~I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
+.++.+.+| +++|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 455666664 999999999999999999863
No 220
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.57 E-value=0.00028 Score=84.63 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=37.0
Q ss_pred eEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCe
Q 001270 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGK 567 (1111)
Q Consensus 518 IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~ 567 (1111)
+++++++++ +|+.++|+||||+|||||+++|++... +..|+|.++|.
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 445555555 899999999999999999999999653 46688877764
No 221
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.55 E-value=0.0059 Score=67.56 Aligned_cols=45 Identities=18% Similarity=0.116 Sum_probs=34.5
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Q 001270 658 VMEPSLLLLDEPTS-GLDSASSQLLLRALRREALEGVNICLVVHQP 702 (1111)
Q Consensus 658 l~~P~lLLLDEPTS-GLD~~s~~~Il~~L~~la~~G~TVIivtHq~ 702 (1111)
..++++||+||.-. ..|......+...+..+...|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999865 2344778888889888777787788887754
No 222
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.54 E-value=0.04 Score=62.74 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=24.8
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
-+++|+++.|.|++|+|||||...++.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999999988875
No 223
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.51 E-value=0.0013 Score=66.45 Aligned_cols=38 Identities=34% Similarity=0.409 Sum_probs=29.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCcee--EEEECCe
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKAIACKATG--LILINGK 567 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG--~I~inG~ 567 (1111)
++|++++|+|++||||||+++.|++.+. ..| .|.++|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~---~~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV---CHGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh---hCCCcEEEECCh
Confidence 4799999999999999999999998542 134 5556554
No 224
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.51 E-value=0.00057 Score=77.53 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=31.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCee
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKN 568 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~ 568 (1111)
+++.+++|+|++|||||||+|.|+|... +..|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeec
Confidence 3678999999999999999999999543 345666665543
No 225
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.48 E-value=0.0028 Score=68.42 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
++.-+.|.||+|+|||||+++|+..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999984
No 226
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.47 E-value=0.0022 Score=66.52 Aligned_cols=44 Identities=9% Similarity=0.088 Sum_probs=30.3
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEecCc
Q 001270 659 MEPSLLLLDEPTSGL-DSASSQLLLRALRREALEGVN-ICLVVHQP 702 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGL-D~~s~~~Il~~L~~la~~G~T-VIivtHq~ 702 (1111)
.+|.+|++||.-.-- +......+.+.+......+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 468999999965432 233367788888877666655 77777753
No 227
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.47 E-value=0.0024 Score=65.00 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=20.9
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.+|+++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999998887 5689999999999999999973
No 228
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.41 E-value=0.0012 Score=68.45 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=25.5
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999999999999998754
No 229
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.35 E-value=0.0015 Score=66.71 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=26.4
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 521 CVTGKIRPGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 521 ~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
++|+...+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999874
No 230
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.25 E-value=0.0011 Score=68.92 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=32.5
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCcee--EEEECCe
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGKAIACKATG--LILINGK 567 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG--~I~inG~ 567 (1111)
+++|.+++|+|++||||||+.+.|++.+. +..| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECCh
Confidence 46899999999999999999999998542 2456 7777754
No 231
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.24 E-value=0.0028 Score=72.12 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=27.4
Q ss_pred EeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 001270 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALA 550 (1111)
Q Consensus 519 L~~VS~~I~~GeivaIiGpSGSGKSTLLkiLa 550 (1111)
+++..+++.+| +++|+|+|||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46778888775 99999999999999999986
No 232
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.20 E-value=0.017 Score=65.28 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
..-+.|.||+|+|||||+++|+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 446889999999999999999974
No 233
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.19 E-value=0.015 Score=64.52 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 524 GKIRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 524 ~~I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
+-+++|+++.|.|++|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999999988875
No 234
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.18 E-value=0.00075 Score=69.27 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=31.2
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
..+++++++..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 457889998888875 689999999999999999873
No 235
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.17 E-value=0.0058 Score=60.43 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999953
No 236
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.13 E-value=0.0022 Score=65.86 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001270 531 ITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaG 551 (1111)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 237
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.09 E-value=0.0054 Score=65.53 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=40.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CccHHHHHhcCeEEEEe
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVH---------QPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtH---------q~~~~i~~~~D~vilL~ 717 (1111)
+++++++||--- |+.. +++.++.++..|.+||++-| .....+..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6543 55666777777999999999 44556777888888763
No 238
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.93 E-value=0.0068 Score=60.58 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 239
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.89 E-value=0.093 Score=59.96 Aligned_cols=27 Identities=44% Similarity=0.697 Sum_probs=24.5
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
-+++|+++.|.|++|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 489999999999999999999977764
No 240
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.82 E-value=0.0034 Score=69.93 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.+..+.|.||+|+|||||++.++..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999874
No 241
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.79 E-value=0.0046 Score=62.74 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=25.2
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
..+|.+++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999854
No 242
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.77 E-value=0.027 Score=65.88 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=28.2
Q ss_pred eEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 518 IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
-|+.+.+-+++|+++.|.|++|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3555555589999999999999999999877765
No 243
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.74 E-value=0.0049 Score=62.09 Aligned_cols=25 Identities=44% Similarity=0.605 Sum_probs=22.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 244
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.72 E-value=0.11 Score=61.49 Aligned_cols=33 Identities=27% Similarity=0.205 Sum_probs=26.4
Q ss_pred EeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 519 LRCVTGKIRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 519 L~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
|+.+..-+.+|+++.|.|++|+|||||+--++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 333333489999999999999999999877764
No 245
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.71 E-value=0.004 Score=64.01 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
..+++|+|++|||||||.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999974
No 246
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.70 E-value=0.0021 Score=74.91 Aligned_cols=46 Identities=24% Similarity=0.129 Sum_probs=37.7
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeC
Q 001270 520 RCVTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNE 569 (1111)
Q Consensus 520 ~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~ 569 (1111)
+++++. +|++++|+|+||+||||++..|++.+. +..|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeeccc
Confidence 567777 899999999999999999999999654 3467888776553
No 247
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.56 E-value=0.0062 Score=60.15 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 248
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.55 E-value=0.0069 Score=60.56 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
|.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999754
No 249
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.55 E-value=0.077 Score=59.16 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
+..-+.|.||+|+|||||.+.|+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 4456889999999999999999984
No 250
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.54 E-value=0.029 Score=59.40 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
..-+.|.||+|+|||||++.|+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999873
No 251
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.37 E-value=0.0074 Score=63.93 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=24.1
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999973
No 252
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.35 E-value=0.0014 Score=74.75 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=32.4
Q ss_pred eeEeeeEEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCC
Q 001270 517 HLLRCVTGKIRPGRI--TAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 517 ~IL~~VS~~I~~Gei--vaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.+|+.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467777888889988 9999999999999999999854
No 253
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.35 E-value=0.0074 Score=60.76 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999984
No 254
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.33 E-value=0.0014 Score=73.22 Aligned_cols=39 Identities=28% Similarity=0.512 Sum_probs=34.1
Q ss_pred cceeEeeeEEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCC
Q 001270 515 NKHLLRCVTGKIRPGRI--TAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 515 ~k~IL~~VS~~I~~Gei--vaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
...+++.++..++.|++ +.+.||+|+|||||+++|++.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 44677888888889998 9999999999999999999954
No 255
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.33 E-value=0.022 Score=66.58 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 001270 646 GQRKRVHVGLEMVMEPSLLLLDEPTS-GLDSASSQLLLRALRREALEGVNICLVVHQPS 703 (1111)
Q Consensus 646 GQrQRVaIArALl~~P~lLLLDEPTS-GLD~~s~~~Il~~L~~la~~G~TVIivtHq~~ 703 (1111)
.|.+....+...+.+++++|+....+ ++.... ..+.+.|+ +.++.+|++.+..+
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~D 142 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLD 142 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC-
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECcc
Confidence 36666777777888888887765543 455543 44555544 35788888887654
No 256
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.31 E-value=0.0079 Score=61.75 Aligned_cols=38 Identities=34% Similarity=0.304 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCceeEEEECCe
Q 001270 530 RITAVMGPSGAGKTTFLSALAGKAIA-CKATGLILINGK 567 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl~~~-~~~sG~I~inG~ 567 (1111)
.+++|+|+||||||||++.|.+.+.. ...-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 58999999999999999999985321 122466666554
No 257
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.30 E-value=0.0056 Score=65.78 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=30.0
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCe
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGK 567 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~ 567 (1111)
.+.+.++.|+|++||||||+.+.|+..+. .+.+.++|.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~----~~~~~~~~D 66 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ----GNIVIIDGD 66 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT----TCCEEECGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC----CCcEEEecH
Confidence 34678999999999999999999998542 245667764
No 258
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.28 E-value=0.0092 Score=59.95 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
+|.+++|.|++||||||+.+.|+-
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999986
No 259
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.23 E-value=0.0091 Score=69.02 Aligned_cols=43 Identities=14% Similarity=0.266 Sum_probs=32.6
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCCC---------CCCceeEEEECCe
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALAGKAI---------ACKATGLILINGK 567 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLaGl~~---------~~~~sG~I~inG~ 567 (1111)
.+..|..++|+|+||+|||||+|.|+|... ..+..|.|.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 456788899999999999999999999621 2355688877663
No 260
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.21 E-value=0.0017 Score=72.08 Aligned_cols=43 Identities=26% Similarity=0.136 Sum_probs=33.2
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCe
Q 001270 522 VTGKIRPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGK 567 (1111)
Q Consensus 522 VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~ 567 (1111)
+++..+ |++++++|++|+||||++..|++... +..|+|.+.+.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~ 134 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGA 134 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEEC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEec
Confidence 666665 99999999999999999999998653 23456665443
No 261
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.20 E-value=0.0087 Score=60.40 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
+++.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999986
No 262
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.14 E-value=0.0063 Score=64.94 Aligned_cols=26 Identities=46% Similarity=0.802 Sum_probs=22.1
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
++.| +.|.||+|+|||||+++|++..
T Consensus 44 ~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 44 IPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 4444 8899999999999999999853
No 263
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.08 E-value=0.011 Score=57.97 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 001270 531 ITAVMGPSGAGKTTFLSAL 549 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiL 549 (1111)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 264
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.05 E-value=0.041 Score=73.72 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=25.9
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-+++|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 4999999999999999999999999873
No 265
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.04 E-value=0.011 Score=61.32 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 266
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.95 E-value=0.012 Score=63.54 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 001270 530 RITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.+++|+||+|||||||.+.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999974
No 267
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.88 E-value=0.013 Score=59.38 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 268
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.85 E-value=0.013 Score=62.95 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhc
Q 001270 529 GRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
.-+++|+||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999996
No 269
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.81 E-value=0.016 Score=59.15 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998743
No 270
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.79 E-value=0.015 Score=58.52 Aligned_cols=25 Identities=36% Similarity=0.266 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.+..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999863
No 271
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.77 E-value=0.014 Score=60.68 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.+.|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999763
No 272
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.75 E-value=0.016 Score=59.08 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999754
No 273
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.68 E-value=0.015 Score=58.57 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=22.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
..+.++.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999999999999985
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.66 E-value=0.018 Score=57.27 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 001270 530 RITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaG 551 (1111)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 275
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.59 E-value=0.0083 Score=61.71 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 276
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.57 E-value=0.018 Score=59.10 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
.+|.+++|.|++||||||+.+.|+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999986
No 277
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.45 E-value=0.02 Score=58.16 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhc
Q 001270 529 GRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
..+++|+|++||||||+.+.|+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999997
No 278
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.44 E-value=0.017 Score=57.93 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 279
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.44 E-value=0.02 Score=57.81 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
.++.+++|+|++||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999986
No 280
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.41 E-value=0.03 Score=63.01 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHh
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALA 550 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLa 550 (1111)
=+++| ++-|.||+|+|||||+--++
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHH
Confidence 37899 99999999999999954443
No 281
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.40 E-value=0.019 Score=63.21 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILING 566 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG 566 (1111)
.|.++.|.||||||||||.+.|+.... .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 467899999999999999999986331 25566765
No 282
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.39 E-value=0.02 Score=58.76 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.3
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
.++|.+++|.|++||||||+.+.|+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999999986
No 283
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.37 E-value=0.023 Score=57.05 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
++.+++|.|++||||||+.+.|+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999975
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.32 E-value=0.021 Score=57.34 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
++.|.|++||||||+.+.|+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 285
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.29 E-value=0.019 Score=62.16 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999953
No 286
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.25 E-value=0.044 Score=55.34 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999876653
No 287
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.06 E-value=0.64 Score=62.54 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=27.5
Q ss_pred eEeeeE--EEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 518 LLRCVT--GKIRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 518 IL~~VS--~~I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
-|+.+- +=+++|+++.|.||+|+|||||.-.++.
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345443 2489999999999999999999877765
No 288
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.01 E-value=0.024 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.++|+|++|+|||||++.|.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999843
No 289
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.00 E-value=0.025 Score=54.93 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 290
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.00 E-value=0.026 Score=57.81 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 530 RITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.+++|+|++|||||||+..|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 379999999999999999998743
No 291
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.99 E-value=0.028 Score=54.63 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|+.|+|||||++.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999984
No 292
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.96 E-value=0.028 Score=55.00 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4799999999999999999984
No 293
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.94 E-value=0.024 Score=55.15 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998843
No 294
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.88 E-value=0.027 Score=54.29 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 295
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.87 E-value=0.03 Score=56.60 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 296
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.85 E-value=0.026 Score=54.31 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
No 297
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.85 E-value=0.022 Score=57.05 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=18.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999863
No 298
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.84 E-value=0.021 Score=65.10 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=36.7
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCccH
Q 001270 660 EPSLLLLDEPTSGLD---SASSQLLLRALRREALEGVNICLVVHQPSY 704 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD---~~s~~~Il~~L~~la~~G~TVIivtHq~~~ 704 (1111)
.|.++++||-=.-++ +.....+.+.+++.++.|..++++||.++.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999988774 667777888888877778999999999864
No 299
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.83 E-value=0.031 Score=56.63 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=23.2
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
++.+.+++|.|++||||||+.+.|+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34577999999999999999999986
No 300
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.83 E-value=0.029 Score=57.26 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999873
No 301
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.82 E-value=0.028 Score=54.28 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|+.|+|||||++.|.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 302
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.81 E-value=0.15 Score=57.47 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
..-+.|.||+|+|||||.++|+..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 344789999999999999999973
No 303
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.77 E-value=0.029 Score=54.09 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|+.|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
No 304
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.75 E-value=0.032 Score=54.37 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001270 532 TAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 532 vaIiGpSGSGKSTLLkiLaGl 552 (1111)
++|+|++|+|||||++.+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999874
No 305
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.73 E-value=0.029 Score=55.06 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999884
No 306
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.71 E-value=0.036 Score=57.73 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
+|-++.|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999986
No 307
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.70 E-value=0.29 Score=55.72 Aligned_cols=25 Identities=40% Similarity=0.680 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
++.-+.|.||+|+|||+|.++|+..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999874
No 308
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.69 E-value=0.031 Score=54.34 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|+.|+|||||++.|.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999854
No 309
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.66 E-value=0.031 Score=54.19 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998743
No 310
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.65 E-value=0.031 Score=54.40 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999974
No 311
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.63 E-value=0.029 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999999743
No 312
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.63 E-value=0.057 Score=60.54 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=31.2
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
...+++..+.+ .|.-++|+|+||+|||||...|.+
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 35788888888 889999999999999999999987
No 313
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.60 E-value=0.032 Score=54.82 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 314
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.59 E-value=0.032 Score=54.01 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999874
No 315
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=93.58 E-value=0.048 Score=62.36 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCC---------CCCCceeEEEECC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGKA---------IACKATGLILING 566 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl~---------~~~~~sG~I~inG 566 (1111)
|-.++|+|.+|+|||||+|.|+|.. ...+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 3468999999999999999999832 1134567777766
No 316
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.56 E-value=0.035 Score=58.17 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
.++.+++|+|++||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999986
No 317
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.55 E-value=0.033 Score=54.70 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999874
No 318
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.53 E-value=0.031 Score=56.03 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.|.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 319
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.52 E-value=0.032 Score=54.84 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999884
No 320
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.48 E-value=0.031 Score=56.07 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999884
No 321
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.48 E-value=0.16 Score=69.15 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=24.8
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 525 KIRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 525 ~I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
=+++|+++.|.||+|+|||||...++.
T Consensus 379 Gl~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 379 GLPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 499999999999999999999887765
No 322
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.48 E-value=0.043 Score=53.92 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
+.-.++|+|++|+|||||++.|.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999884
No 323
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.47 E-value=0.033 Score=55.54 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.|.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999984
No 324
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.46 E-value=0.21 Score=51.85 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=38.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC---------ccHHHHHhcCeEEEE
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQ---------PSYALFRMFDDLVLL 716 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq---------~~~~i~~~~D~vilL 716 (1111)
+.+++++||--- ||+. +++.|++++..|+.||++-++ ....+..++|.|.-|
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el 141 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKI 141 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEee
Confidence 479999999543 6644 356777777779999999984 345566778877666
No 325
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.46 E-value=0.036 Score=59.38 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHh---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEecCcc
Q 001270 646 GQRKRVHVGLEMV---MEPSLLLLDEPTSGLDSASSQLLLRALRREALE---GVNICLVVHQPS 703 (1111)
Q Consensus 646 GQrQRVaIArALl---~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~---G~TVIivtHq~~ 703 (1111)
|++.+-.+.+++. .+++++|+--+.+.++.. ...+++.++++... +.++|+++|-.+
T Consensus 88 ~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~D 150 (247)
T 3lxw_A 88 TDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKED 150 (247)
T ss_dssp HSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGG
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHh
Confidence 3444445555553 778887766555555543 44556666665322 678999998643
No 326
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.44 E-value=0.04 Score=55.39 Aligned_cols=22 Identities=36% Similarity=0.373 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999863
No 327
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.43 E-value=0.039 Score=56.99 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001270 531 ITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaG 551 (1111)
.++|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 328
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.39 E-value=0.036 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|+.|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999853
No 329
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.37 E-value=0.037 Score=54.88 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 330
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.33 E-value=0.038 Score=53.57 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|+.|+|||||++.|.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
No 331
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.33 E-value=0.11 Score=50.56 Aligned_cols=42 Identities=7% Similarity=0.014 Sum_probs=29.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQP 702 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~ 702 (1111)
+..+|++||.- .|+...+..+++.|.+....+..+|++|+..
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999964 6788888888888876433356677776653
No 332
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.30 E-value=0.036 Score=55.09 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001270 532 TAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 532 vaIiGpSGSGKSTLLkiLaGl 552 (1111)
++|+|++|+|||||++.+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999984
No 333
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.29 E-value=0.7 Score=54.14 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
++.+++++|++|+||||++.-|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998743
No 334
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.25 E-value=0.047 Score=55.89 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
.+-+++|+|++||||||+.+.|+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 455899999999999999999986
No 335
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.24 E-value=0.045 Score=54.79 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhc
Q 001270 529 GRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
+.+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 336
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.24 E-value=0.046 Score=55.89 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhc
Q 001270 529 GRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
..+++|.|++||||||+.+.|+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 337
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.23 E-value=0.044 Score=59.93 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.|+|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999994
No 338
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.22 E-value=0.039 Score=54.65 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 001270 530 RITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaG 551 (1111)
.+++|.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 339
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.21 E-value=0.04 Score=54.69 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999974
No 340
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.21 E-value=0.045 Score=53.83 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
No 341
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.20 E-value=0.037 Score=57.70 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
.+.++.|+|++||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999986
No 342
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.19 E-value=0.041 Score=53.62 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 001270 530 RITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 343
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.16 E-value=0.05 Score=58.61 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++.++.|.|++||||||+.+.|+..
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999863
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.13 E-value=0.049 Score=53.75 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001270 531 ITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaG 551 (1111)
+++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 345
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.11 E-value=0.047 Score=56.48 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001270 531 ITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaG 551 (1111)
.++|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 346
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.09 E-value=0.042 Score=55.21 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999984
No 347
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.08 E-value=0.051 Score=53.94 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhc
Q 001270 529 GRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
-++++|.|+.||||||+.+.|+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 348
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.07 E-value=0.044 Score=53.14 Aligned_cols=20 Identities=40% Similarity=0.431 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 001270 532 TAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 532 vaIiGpSGSGKSTLLkiLaG 551 (1111)
++|+|++|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999986
No 349
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.06 E-value=0.029 Score=55.52 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 001270 530 RITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaG 551 (1111)
-.++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999975
No 350
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.06 E-value=0.33 Score=56.18 Aligned_cols=21 Identities=38% Similarity=0.635 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001270 532 TAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 532 vaIiGpSGSGKSTLLkiLaGl 552 (1111)
+.|.||+|+|||+|.++|++.
T Consensus 185 vLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHH
T ss_pred eEEeCCCCCCHHHHHHHHHHh
Confidence 678999999999999999983
No 351
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.02 E-value=0.041 Score=53.88 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|+.|+|||||++.|.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 352
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.97 E-value=0.045 Score=54.00 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999974
No 353
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.95 E-value=0.046 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 354
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.94 E-value=0.042 Score=55.24 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 001270 530 RITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaG 551 (1111)
.+++|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 355
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.93 E-value=0.047 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|+.|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999843
No 356
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.93 E-value=0.046 Score=54.48 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|++|+|||||++.|.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 36899999999999999999854
No 357
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.87 E-value=0.043 Score=59.50 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|.+|+|||||+|.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999884
No 358
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.83 E-value=0.048 Score=54.51 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|+.|+|||||++.|.+.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 359
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.82 E-value=0.05 Score=53.65 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|+.|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 360
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.80 E-value=0.049 Score=55.00 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
No 361
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.76 E-value=0.57 Score=54.80 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=32.8
Q ss_pred HHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH----hCCCEEEEEecCcc
Q 001270 653 VGLEMVMEPSLLLLDEPTS----------GLDSASSQLLLRALRREA----LEGVNICLVVHQPS 703 (1111)
Q Consensus 653 IArALl~~P~lLLLDEPTS----------GLD~~s~~~Il~~L~~la----~~G~TVIivtHq~~ 703 (1111)
+..|-...|.|||+||--+ +-|......+..+|..+- ..+..||.+|++|+
T Consensus 267 F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 267 FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD 331 (437)
T ss_dssp HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTT
T ss_pred HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCch
Confidence 3344456899999999754 224444555666666653 12567888998875
No 362
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.72 E-value=0.051 Score=55.00 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.++|+|+.|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998843
No 363
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.65 E-value=0.057 Score=59.80 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|.+|+|||||+|.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 364
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.65 E-value=0.058 Score=57.64 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 001270 530 RITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-+++|.|++||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 365
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.62 E-value=0.05 Score=53.97 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 366
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.61 E-value=0.051 Score=54.55 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
No 367
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.59 E-value=0.066 Score=57.17 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
++-+++|+||+||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999985
No 368
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.59 E-value=0.057 Score=53.76 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
+.=.++|+|++|+|||||++.+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3446899999999999999999874
No 369
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.58 E-value=0.054 Score=57.77 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.|.|.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 370
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.56 E-value=0.054 Score=55.61 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999843
No 371
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.51 E-value=0.056 Score=54.08 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999984
No 372
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.48 E-value=0.057 Score=54.13 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|++|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998743
No 373
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.46 E-value=0.069 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 374
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.45 E-value=0.49 Score=55.16 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 001270 530 RITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.=+.|.||+|+|||+|.++|++.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999983
No 375
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.45 E-value=0.063 Score=59.46 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|.+|+|||||+|.|.|.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999994
No 376
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.43 E-value=0.049 Score=55.56 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999763
No 377
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.41 E-value=0.06 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999874
No 378
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.40 E-value=0.06 Score=53.17 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
No 379
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.34 E-value=0.057 Score=54.00 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 380
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.33 E-value=0.067 Score=54.17 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|+.|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999843
No 381
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.30 E-value=0.06 Score=58.14 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|.+|+|||||++.|+|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999995
No 382
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.28 E-value=0.059 Score=54.37 Aligned_cols=23 Identities=17% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|+.|+|||||++.|.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998743
No 383
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.26 E-value=0.072 Score=55.30 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhc
Q 001270 529 GRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
.-+++|+|+.||||||+.+.|+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 384
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.22 E-value=0.064 Score=54.22 Aligned_cols=22 Identities=23% Similarity=0.573 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999874
No 385
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.20 E-value=0.064 Score=55.26 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.|++.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 386
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.19 E-value=0.066 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999873
No 387
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.18 E-value=0.068 Score=54.19 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48899999999999999999854
No 388
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.15 E-value=0.037 Score=56.94 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 67999999999999999999853
No 389
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.11 E-value=0.062 Score=54.61 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57899999999999999999843
No 390
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.10 E-value=0.064 Score=53.06 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001270 531 ITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaG 551 (1111)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999985
No 391
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.08 E-value=0.07 Score=58.37 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.++|+|+.|+|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 392
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.07 E-value=0.07 Score=53.53 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.|.+.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999984
No 393
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.07 E-value=0.077 Score=55.66 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001270 531 ITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaG 551 (1111)
+++|+|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 394
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.05 E-value=0.056 Score=54.22 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.|.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999884
No 395
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.04 E-value=0.063 Score=61.39 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001270 532 TAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 532 vaIiGpSGSGKSTLLkiLaGl 552 (1111)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999984
No 396
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.04 E-value=0.064 Score=54.53 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|+.|+|||||++.|.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 397
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.02 E-value=0.088 Score=51.79 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999874
No 398
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.073 Score=53.25 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001270 531 ITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaG 551 (1111)
.++|+|++|+|||||++.+.+
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999996
No 399
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.99 E-value=0.066 Score=53.85 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|+.|+|||||++.|.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999999843
No 400
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.98 E-value=0.071 Score=53.61 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|+.|+|||||++.|.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999974
No 401
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.97 E-value=0.073 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 402
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.97 E-value=0.073 Score=58.24 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 001270 530 RITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaG 551 (1111)
.+++|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 403
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.97 E-value=0.072 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.++|+|+.|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 404
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.97 E-value=0.073 Score=55.49 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.|.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999884
No 405
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.89 E-value=0.073 Score=54.12 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001270 531 ITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaG 551 (1111)
.++|+|.+|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999987
No 406
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.89 E-value=0.047 Score=60.26 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=18.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
++-+++|.|++||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 407
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.88 E-value=0.074 Score=54.08 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|+.|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 408
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.88 E-value=0.13 Score=58.35 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
++.++.|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56689999999999999999999843
No 409
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.85 E-value=0.075 Score=53.39 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|+.|+|||||++.|.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999873
No 410
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.83 E-value=0.076 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999843
No 411
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.83 E-value=0.077 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 412
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.82 E-value=0.068 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|+.|+|||||++.|.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999984
No 413
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.82 E-value=0.075 Score=57.81 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|.+|+|||||+|.|+|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999994
No 414
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.81 E-value=0.13 Score=52.78 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|+.|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999843
No 415
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.80 E-value=0.081 Score=57.14 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.|+|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999984
No 416
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.80 E-value=0.083 Score=55.03 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
+|-.+.|+|+.||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999986
No 417
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.78 E-value=0.089 Score=57.25 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 001270 530 RITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaG 551 (1111)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 418
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.72 E-value=0.079 Score=53.75 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|+.|+|||||++.|.+.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
No 419
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.69 E-value=0.18 Score=52.19 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=28.1
Q ss_pred ceeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 516 KHLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 516 k~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
+..++..-..+ .|.-+.|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34566655554 788999999999999999988875
No 420
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.67 E-value=0.073 Score=56.86 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=21.4
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
..+|.+++|.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999998743
No 421
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.66 E-value=0.1 Score=55.02 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.+|.+++|.|++||||||+++.|...+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999997643
No 422
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.61 E-value=0.087 Score=54.60 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001270 531 ITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaG 551 (1111)
.++|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 423
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.58 E-value=0.092 Score=53.03 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|+.|+|||||++.+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 424
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.55 E-value=0.067 Score=52.76 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 425
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.54 E-value=0.078 Score=54.57 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999998864
No 426
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.54 E-value=0.08 Score=54.16 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999984
No 427
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.52 E-value=0.094 Score=56.96 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
+...+.|.||+|+|||||.++|++..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHH
Confidence 44578999999999999999999854
No 428
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.51 E-value=0.078 Score=57.37 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999954
No 429
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.49 E-value=0.15 Score=53.90 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=28.5
Q ss_pred eeEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 517 HLLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 517 ~IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
..++..-..+ .|..+.|+||+|+|||||...|+..
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3566655555 6889999999999999999999873
No 430
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.37 E-value=0.093 Score=54.12 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999873
No 431
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.33 E-value=0.094 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4799999999999999998874
No 432
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.30 E-value=0.092 Score=53.70 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 433
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.27 E-value=0.063 Score=53.19 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=9.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999863
No 434
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.24 E-value=0.11 Score=54.62 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
.+..+.|+|+.||||||+.+.|+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999986
No 435
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.24 E-value=0.094 Score=56.38 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.++|+|.+|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999853
No 436
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.20 E-value=0.1 Score=60.44 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
...+++.|+|++||||||+.+.|+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999986
No 437
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.15 E-value=0.29 Score=66.55 Aligned_cols=34 Identities=32% Similarity=0.538 Sum_probs=29.1
Q ss_pred EeeeEE--EEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 519 LRCVTG--KIRPGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 519 L~~VS~--~I~~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
|+.+.. -+++|+++.|.|++|+|||||+..++..
T Consensus 720 LD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~ 755 (2050)
T 3cmu_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 555553 6999999999999999999999988863
No 438
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.12 E-value=0.091 Score=54.16 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999984
No 439
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.11 E-value=0.62 Score=50.08 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=42.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC---------ccHHHHHhcCeEEEEe
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQ---------PSYALFRMFDDLVLLA 717 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq---------~~~~i~~~~D~vilL~ 717 (1111)
.+.+++++||----.| +.++++.++..|+.||++-++ ....+..++|.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 555565556689999999999 6677788999988874
No 440
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.03 E-value=0.095 Score=53.10 Aligned_cols=21 Identities=38% Similarity=0.373 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001270 531 ITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaG 551 (1111)
-++|+|++|+|||||++.+.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999976
No 441
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.01 E-value=0.12 Score=54.56 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999744
No 442
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.99 E-value=0.64 Score=49.34 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=40.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CccHHHHHhcCeEEEEe
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVH---------QPSYALFRMFDDLVLLA 717 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtH---------q~~~~i~~~~D~vilL~ 717 (1111)
+.+++++||--- ||.. +++.|++++..|+.||+.-+ .....+..++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6644 33677777777999999999 55566677777777764
No 443
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.98 E-value=0.096 Score=53.28 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999984
No 444
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.94 E-value=0.12 Score=55.63 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
+|.+++|.|++||||||+++.|...+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999998743
No 445
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.91 E-value=0.1 Score=56.22 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.++|+|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999843
No 446
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.80 E-value=0.11 Score=52.29 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 447
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.78 E-value=0.12 Score=58.62 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 530 RITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999743
No 448
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.71 E-value=0.16 Score=52.95 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=30.7
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCc
Q 001270 658 VMEPSLLLLDEPTS----GLDSASSQLLLRALRREALE-GVNICLVVHQP 702 (1111)
Q Consensus 658 l~~P~lLLLDEPTS----GLD~~s~~~Il~~L~~la~~-G~TVIivtHq~ 702 (1111)
-.+|+++++|--+. .-|......++..|+.++++ |.++++++|..
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 35889999985432 11444556677777777754 89999998853
No 449
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.69 E-value=0.13 Score=54.28 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
+|.+++|.|++||||||+++.|...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998743
No 450
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.65 E-value=0.11 Score=51.09 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
+..+.|.||+|+|||||++.++..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 445789999999999999999874
No 451
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.60 E-value=0.094 Score=56.24 Aligned_cols=47 Identities=17% Similarity=0.245 Sum_probs=29.7
Q ss_pred HHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 001270 655 LEMVMEPSLLLLDEPTSG-LDSASSQLLLRALRREALEGVNICLVVHQ 701 (1111)
Q Consensus 655 rALl~~P~lLLLDEPTSG-LD~~s~~~Il~~L~~la~~G~TVIivtHq 701 (1111)
.+|..+|+++|+||+-.- .+........+.+..+...|..|+.++|-
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nl 126 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNV 126 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEG
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccc
Confidence 334468999999998642 33322233344444455678889999883
No 452
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=90.60 E-value=0.061 Score=55.22 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 453
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.59 E-value=0.14 Score=57.42 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
+.+++|+||+|||||||...|+-..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999999743
No 454
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.58 E-value=0.14 Score=52.00 Aligned_cols=43 Identities=28% Similarity=0.317 Sum_probs=29.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 001270 659 MEPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPS 703 (1111)
Q Consensus 659 ~~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~ 703 (1111)
.+|.+|++||.-. ||......+++.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999765 7877777766666432 23567788887754
No 455
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.55 E-value=0.12 Score=53.43 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|.+|+|||||++-+++.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999863
No 456
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.44 E-value=0.12 Score=53.27 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
+.+++|+|++||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999874
No 457
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.43 E-value=0.15 Score=54.19 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.1
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 526 IRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 526 I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
+++..++.|+||.||||+|..+.|+-
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45667899999999999999999986
No 458
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.43 E-value=0.097 Score=56.17 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 577899999999999999999998744
No 459
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.38 E-value=0.13 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999843
No 460
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.36 E-value=0.14 Score=54.25 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.+|.+++|.|++||||||+.+.|...+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999998754
No 461
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.35 E-value=0.16 Score=54.18 Aligned_cols=27 Identities=30% Similarity=0.230 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.+|.+++|.|++||||||+.+.|...+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998743
No 462
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=90.31 E-value=0.15 Score=60.14 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=28.3
Q ss_pred eEeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 518 LLRCVTGKIRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 518 IL~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
+++.+ ..+-+|+.++|+|+||+|||||++.|+.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHh
Confidence 45555 5567899999999999999999999987
No 463
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.31 E-value=0.14 Score=53.54 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999973
No 464
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.31 E-value=0.09 Score=52.58 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001270 531 ITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaG 551 (1111)
-++|+|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 465
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.22 E-value=0.061 Score=54.26 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=4.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 466
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.14 E-value=0.13 Score=52.52 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|+.|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4799999999999999999874
No 467
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.73 E-value=0.14 Score=52.17 Aligned_cols=22 Identities=23% Similarity=0.364 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 468
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=89.72 E-value=0.16 Score=55.14 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 530 RITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
-.++|+|.+|+|||||+|.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 578999999999999999999954
No 469
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.72 E-value=0.17 Score=57.01 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 530 RITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.+++|+||+|||||||.+.|+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999843
No 470
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.72 E-value=0.14 Score=52.30 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999999863
No 471
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.46 E-value=0.16 Score=52.44 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 472
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.36 E-value=0.36 Score=57.11 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHH--HHhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccH
Q 001270 642 GISGGQRKRVHVGL--EMVM---------------EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPSY 704 (1111)
Q Consensus 642 gLSGGQrQRVaIAr--ALl~---------------~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~~ 704 (1111)
++||||+|-.-+|. +++. .=.+++|||. +-+|.......+++++++ |.-+|+++=.
T Consensus 379 ~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~--- 451 (483)
T 3euj_A 379 ALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE--- 451 (483)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS---
T ss_pred CCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc---
Confidence 59999999644433 3332 1257999999 999999999999999976 7778888865
Q ss_pred HHHHhcCeEEEEe
Q 001270 705 ALFRMFDDLVLLA 717 (1111)
Q Consensus 705 ~i~~~~D~vilL~ 717 (1111)
.+....|.++.|-
T Consensus 452 ~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 NISPERGTTYKLV 464 (483)
T ss_dssp SCCCSSSEEEECC
T ss_pred hhhhccCceEEEE
Confidence 2446778888775
No 473
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.90 E-value=0.22 Score=52.27 Aligned_cols=21 Identities=48% Similarity=0.659 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001270 531 ITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaG 551 (1111)
++.|+||.||||+|..+.|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 474
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.87 E-value=0.23 Score=55.63 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
..+++|+||+|||||||...|+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 458999999999999999999974
No 475
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.39 E-value=0.24 Score=57.40 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 001270 530 RITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 530 eivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.+++|+||+|||||||...|+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 57899999999999999999873
No 476
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.90 E-value=0.28 Score=50.25 Aligned_cols=38 Identities=11% Similarity=0.180 Sum_probs=28.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQP 702 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~ 702 (1111)
+++++++||--- +|+ .+++.|+.++.+|..||++.++.
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESB
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeecc
Confidence 578999999743 443 36667777777799999988853
No 477
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.78 E-value=0.27 Score=49.44 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=27.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQP 702 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~ 702 (1111)
++.+|++||. ..++......+.+.+.+. ..+..+|++++.+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 6889999995 456777777776666552 2345566666654
No 478
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=87.66 E-value=0.3 Score=53.64 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
+-.++|+|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999953
No 479
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=87.48 E-value=0.11 Score=52.93 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001270 531 ITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaG 551 (1111)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999998876
No 480
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=87.38 E-value=0.19 Score=56.65 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999954
No 481
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=87.35 E-value=0.31 Score=55.03 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.-+++|+|+.|+|||||++.|++.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
No 482
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.34 E-value=0.26 Score=54.30 Aligned_cols=42 Identities=17% Similarity=0.367 Sum_probs=31.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQPS 703 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~~ 703 (1111)
++.||++|| ...|+......+++.+.+.. ....+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS-GVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC-CCceEEEEeCchh
Confidence 567999999 78899988888888887643 2345666776654
No 483
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=87.34 E-value=0.25 Score=57.30 Aligned_cols=22 Identities=32% Similarity=0.711 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|++|+|||||++.|.|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999983
No 484
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=87.30 E-value=0.27 Score=56.74 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEE---eCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 001270 617 VIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLL---DEPTSGLDSASSQLLLRALRREALEGV 693 (1111)
Q Consensus 617 ~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLL---DEPTSGLD~~s~~~Il~~L~~la~~G~ 693 (1111)
.++++++.++.... .. .+|.++.+++.-..-+...|-|+++ |.+ + ...+.++.+.+...+.
T Consensus 181 ~~~~~l~~l~~~~~----~~-----~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~------~~~l~~l~~~~~~~~~ 244 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----PT-----KWSQDDLLAFASEIRRVNKPMVIAANKADAA-S------DEQIKRLVREEEKRGY 244 (397)
T ss_dssp HHHHHHHHTTCCSC----GG-----GCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-C------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCc----cc-----cCCHHHHHHHHHhhhccCCCEEEEEeCcccc-c------hHHHHHHHHHHhhcCC
Confidence 45666777766433 11 3899998888777777789999987 544 1 1223233333333466
Q ss_pred EEEEEecCccHHHHH
Q 001270 694 NICLVVHQPSYALFR 708 (1111)
Q Consensus 694 TVIivtHq~~~~i~~ 708 (1111)
.+|.++-..+..+.+
T Consensus 245 ~vv~iSA~~e~~l~~ 259 (397)
T 1wxq_A 245 IVIPTSAAAELTLRK 259 (397)
T ss_dssp EEEEECHHHHHHHHS
T ss_pred cEEEEeccchhhHHH
Confidence 677776555544433
No 485
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=87.28 E-value=0.19 Score=51.75 Aligned_cols=20 Identities=45% Similarity=0.833 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHH-Hhc
Q 001270 532 TAVMGPSGAGKTTFLSA-LAG 551 (1111)
Q Consensus 532 vaIiGpSGSGKSTLLki-LaG 551 (1111)
++|+|++|+|||||++. +.|
T Consensus 18 i~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 78999999999999998 555
No 486
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=87.25 E-value=0.31 Score=53.78 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998874
No 487
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=87.21 E-value=0.072 Score=54.04 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
-++|+|++|+|||||++.|.+.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 488
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.02 E-value=0.093 Score=65.85 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=27.8
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 523 TGKIRPGRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 523 S~~I~~GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
++.+.+|+.+.|.||+|+|||||.++|++..
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 5567899999999999999999999999853
No 489
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=86.90 E-value=0.38 Score=50.32 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
|.+++|=|+-||||||+++.|...+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5789999999999999999998754
No 490
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.84 E-value=0.34 Score=47.18 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=28.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Q 001270 660 EPSLLLLDEPTSGLDSASSQLLLRALRREALEGVNICLVVHQP 702 (1111)
Q Consensus 660 ~P~lLLLDEPTSGLD~~s~~~Il~~L~~la~~G~TVIivtHq~ 702 (1111)
+..+|++||.- .|++..+..+++.|... ..+..+|.+|+.+
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~ 116 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTS 116 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSC
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcC
Confidence 34689999984 68888888888887332 2245677777654
No 491
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=86.70 E-value=0.28 Score=55.85 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
++..++++|.+|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567899999999999999999984
No 492
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=86.52 E-value=0.63 Score=53.96 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl 552 (1111)
.++|+|.+++|||||+|.|.|.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 493
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.50 E-value=0.36 Score=52.39 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
++.-+.|.||+|+|||||.+.|+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999998874
No 494
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=86.42 E-value=0.3 Score=58.63 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 001270 531 ITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 531 ivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
.++|+|..|+|||||+|.|.|..
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999953
No 495
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=86.39 E-value=0.41 Score=53.95 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001270 524 GKIRPGRITAVMGPSGAGKTTFLSALAG 551 (1111)
Q Consensus 524 ~~I~~GeivaIiGpSGSGKSTLLkiLaG 551 (1111)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999999999999875
No 496
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=86.35 E-value=0.17 Score=53.98 Aligned_cols=21 Identities=43% Similarity=0.798 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001270 532 TAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 532 vaIiGpSGSGKSTLLkiLaGl 552 (1111)
+.|.||+|+|||||+++|+..
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999973
No 497
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=86.30 E-value=0.3 Score=59.24 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCC
Q 001270 529 GRITAVMGPSGAGKTTFLSALAGKA 553 (1111)
Q Consensus 529 GeivaIiGpSGSGKSTLLkiLaGl~ 553 (1111)
--+++|+|++|+|||||+|.|.|..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3578999999999999999999953
No 498
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.17 E-value=1.1 Score=55.53 Aligned_cols=116 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCCCCCCceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHhhcc
Q 001270 527 RPGRITAVMGPSGAGKTTFLSALAGKAIACKATGLILINGKNEPIHSYKKIIGFVPQDDIVHGNLTVEENLWFHARCRLS 606 (1111)
Q Consensus 527 ~~GeivaIiGpSGSGKSTLLkiLaGl~~~~~~sG~I~inG~~~~~~~~r~~IgyV~Qd~~l~~~LTV~EnL~f~a~~~~~ 606 (1111)
++-..+.|.||+|+|||+|.++|+..... ...--|.+|...........
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~-~~~~~i~i~~s~~~~~~~~~------------------------------ 567 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESIFG-DEESMIRIDMSEYMEKHSTS------------------------------ 567 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHHHS-CTTCEEEEEGGGGCSSCCCC------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcC-CCcceEEEechhcccccccc------------------------------
Q ss_pred ccchHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001270 607 AHLAKADKVLVIERVIDTLGLQTVRDSLVGTVEKRGISGGQRKRVHVGLEMVMEPSLLLLDEPTSGLDSASSQLLLRALR 686 (1111)
Q Consensus 607 ~~~~~~~~~~~v~~vL~~LGL~~~~d~~vg~~~~rgLSGGQrQRVaIArALl~~P~lLLLDEPTSGLD~~s~~~Il~~L~ 686 (1111)
.+. +.+--+++ .+.+|||||- .-+++.....+++.|.
T Consensus 568 ----------------------------~~~-----l~~~~~~~---------~~~vl~lDEi-~~~~~~~~~~Ll~~le 604 (758)
T 3pxi_A 568 ----------------------------GGQ-----LTEKVRRK---------PYSVVLLDAI-EKAHPDVFNILLQVLE 604 (758)
T ss_dssp ------------------------------------CHHHHHHC---------SSSEEEEECG-GGSCHHHHHHHHHHHH
T ss_pred ----------------------------cch-----hhHHHHhC---------CCeEEEEeCc-cccCHHHHHHHHHHhc
Q ss_pred H----------HHhCCCEEEEEecC---------------ccHHHHHhcCeEEEE
Q 001270 687 R----------EALEGVNICLVVHQ---------------PSYALFRMFDDLVLL 716 (1111)
Q Consensus 687 ~----------la~~G~TVIivtHq---------------~~~~i~~~~D~vilL 716 (1111)
+ ....+..+|++|+. ...++...+|.++.+
T Consensus 605 ~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~ 659 (758)
T 3pxi_A 605 DGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVF 659 (758)
T ss_dssp HSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEEC
T ss_pred cCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEec
No 499
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=85.99 E-value=0.4 Score=54.16 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=25.3
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 520 RCVTGKIRPGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 520 ~~VS~~I~~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
..+.++++----++|+|.+++|||||++.|++.
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 344445554445899999999999999999873
No 500
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=85.78 E-value=0.29 Score=55.72 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcC
Q 001270 528 PGRITAVMGPSGAGKTTFLSALAGK 552 (1111)
Q Consensus 528 ~GeivaIiGpSGSGKSTLLkiLaGl 552 (1111)
++..++++|.+|+|||||+|.|.|.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 4667999999999999999999984
Done!