Query 001271
Match_columns 1111
No_of_seqs 615 out of 3390
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 20:24:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1859 Leucine-rich repeat pr 100.0 2.7E-94 5.8E-99 833.5 3.5 1012 5-1110 1-1087(1096)
2 KOG4194 Membrane glycoprotein 99.9 2.9E-23 6.4E-28 239.4 4.3 296 25-324 101-430 (873)
3 KOG0444 Cytoskeletal regulator 99.9 3.7E-23 7.9E-28 238.8 -1.6 289 24-321 30-373 (1255)
4 KOG4194 Membrane glycoprotein 99.8 1.8E-22 3.9E-27 233.0 0.8 284 27-323 79-378 (873)
5 PLN00113 leucine-rich repeat r 99.8 1.6E-20 3.5E-25 239.5 17.2 241 67-322 122-368 (968)
6 PLN00113 leucine-rich repeat r 99.8 2.2E-20 4.7E-25 238.4 17.3 253 67-323 288-560 (968)
7 KOG0444 Cytoskeletal regulator 99.8 4.8E-21 1E-25 221.5 -2.6 258 25-295 102-374 (1255)
8 KOG0472 Leucine-rich repeat pr 99.8 1.6E-19 3.5E-24 202.1 1.3 264 25-296 182-541 (565)
9 KOG0472 Leucine-rich repeat pr 99.7 4.7E-20 1E-24 206.4 -3.8 241 26-296 68-310 (565)
10 PRK15370 E3 ubiquitin-protein 99.7 6E-17 1.3E-21 200.8 12.4 270 17-333 169-438 (754)
11 PRK15387 E3 ubiquitin-protein 99.7 5.7E-16 1.2E-20 191.7 17.0 261 19-328 194-463 (788)
12 PRK15387 E3 ubiquitin-protein 99.7 3E-16 6.5E-21 194.2 13.5 235 25-298 221-460 (788)
13 KOG1259 Nischarin, modulator o 99.7 3.2E-17 7E-22 178.3 4.2 300 17-336 130-453 (490)
14 KOG0618 Serine/threonine phosp 99.7 2.1E-17 4.5E-22 200.0 1.9 268 27-323 242-513 (1081)
15 KOG0618 Serine/threonine phosp 99.6 8.5E-17 1.8E-21 194.7 0.9 279 28-324 47-466 (1081)
16 PRK15370 E3 ubiquitin-protein 99.6 3.5E-15 7.6E-20 185.3 7.4 228 24-296 197-428 (754)
17 PF14580 LRR_9: Leucine-rich r 99.5 2.2E-15 4.8E-20 157.1 4.2 158 176-337 5-165 (175)
18 PLN03210 Resistant to P. syrin 99.5 5.1E-14 1.1E-18 183.6 17.5 272 25-321 588-904 (1153)
19 KOG4237 Extracellular matrix p 99.5 1.2E-15 2.6E-20 171.5 2.0 269 30-328 50-364 (498)
20 KOG4237 Extracellular matrix p 99.5 4.3E-15 9.3E-20 167.1 5.4 255 57-326 36-338 (498)
21 cd00116 LRR_RI Leucine-rich re 99.5 2.5E-14 5.4E-19 158.8 10.8 217 79-325 43-293 (319)
22 cd00116 LRR_RI Leucine-rich re 99.5 2.4E-14 5.2E-19 159.0 8.7 260 25-322 22-319 (319)
23 PLN03210 Resistant to P. syrin 99.5 2.7E-13 5.8E-18 177.0 18.4 281 19-325 551-861 (1153)
24 KOG0617 Ras suppressor protein 99.4 1.4E-15 3.1E-20 155.3 -7.2 176 84-296 30-212 (264)
25 KOG0617 Ras suppressor protein 99.4 1.1E-14 2.5E-19 148.8 -0.7 182 107-325 29-214 (264)
26 KOG3207 Beta-tubulin folding c 99.4 2.7E-14 5.9E-19 162.5 0.9 251 78-337 112-379 (505)
27 KOG0532 Leucine-rich repeat (L 99.4 2.3E-13 4.9E-18 158.7 8.3 174 110-298 74-249 (722)
28 PF14580 LRR_9: Leucine-rich r 99.1 3.8E-11 8.3E-16 125.5 6.1 136 197-335 3-138 (175)
29 KOG2982 Uncharacterized conser 99.1 3E-11 6.4E-16 132.6 4.7 259 76-377 60-335 (418)
30 COG4886 Leucine-rich repeat (L 99.0 2E-10 4.3E-15 133.0 6.3 192 91-297 97-291 (394)
31 KOG0532 Leucine-rich repeat (L 99.0 6.2E-12 1.3E-16 147.0 -6.1 194 86-293 74-270 (722)
32 COG4886 Leucine-rich repeat (L 99.0 3.2E-10 6.9E-15 131.3 6.5 182 82-275 111-294 (394)
33 KOG0531 Protein phosphatase 1, 99.0 1.5E-10 3.2E-15 135.9 1.1 229 81-326 89-321 (414)
34 KOG1909 Ran GTPase-activating 98.9 5.9E-10 1.3E-14 125.0 2.9 202 25-250 29-255 (382)
35 KOG0531 Protein phosphatase 1, 98.8 3.5E-10 7.7E-15 132.7 -1.5 197 84-297 69-269 (414)
36 KOG3207 Beta-tubulin folding c 98.8 6.5E-10 1.4E-14 127.4 -0.3 213 106-327 116-343 (505)
37 KOG1909 Ran GTPase-activating 98.8 1.6E-09 3.5E-14 121.5 2.5 228 67-323 34-311 (382)
38 KOG1259 Nischarin, modulator o 98.8 8.8E-10 1.9E-14 121.1 0.2 144 190-339 283-430 (490)
39 KOG1644 U2-associated snRNP A' 98.6 4.6E-08 9.9E-13 103.4 6.2 120 192-334 43-162 (233)
40 KOG1859 Leucine-rich repeat pr 98.3 1.5E-08 3.2E-13 121.5 -6.4 74 899-972 936-1045(1096)
41 PLN03150 hypothetical protein; 98.3 7.4E-07 1.6E-11 110.3 7.4 166 23-224 352-526 (623)
42 PLN03150 hypothetical protein; 98.3 9.5E-07 2.1E-11 109.3 7.9 104 112-248 419-527 (623)
43 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.9E-11 75.3 3.3 58 168-225 1-61 (61)
44 PF13855 LRR_8: Leucine rich r 98.1 1.4E-06 3.1E-11 75.1 3.1 59 236-295 1-61 (61)
45 COG5238 RNA1 Ran GTPase-activa 98.1 1.7E-06 3.6E-11 95.0 2.8 201 24-250 28-256 (388)
46 KOG2123 Uncharacterized conser 98.1 3.6E-07 7.8E-12 100.4 -2.6 116 212-330 18-135 (388)
47 KOG2982 Uncharacterized conser 98.0 3.5E-06 7.5E-11 93.5 3.9 204 65-298 73-292 (418)
48 KOG4658 Apoptotic ATPase [Sign 97.9 8.1E-06 1.8E-10 104.3 4.8 89 80-179 564-653 (889)
49 KOG4658 Apoptotic ATPase [Sign 97.8 6.7E-06 1.4E-10 105.0 1.8 260 26-296 523-807 (889)
50 COG5238 RNA1 Ran GTPase-activa 97.8 2.5E-05 5.4E-10 86.0 5.4 215 82-322 25-284 (388)
51 KOG1644 U2-associated snRNP A' 97.5 9.1E-05 2E-09 78.9 5.2 110 215-327 21-130 (233)
52 PF12799 LRR_4: Leucine Rich r 97.5 8.8E-05 1.9E-09 60.8 4.0 41 169-209 2-42 (44)
53 KOG4579 Leucine-rich repeat (L 97.5 9.7E-06 2.1E-10 81.7 -2.4 128 169-298 28-161 (177)
54 KOG2739 Leucine-rich acidic nu 97.5 5.4E-05 1.2E-09 83.3 3.0 69 256-326 89-157 (260)
55 KOG4579 Leucine-rich repeat (L 97.5 5.9E-06 1.3E-10 83.2 -4.1 128 192-325 28-161 (177)
56 KOG2120 SCF ubiquitin ligase, 97.5 4.6E-06 1E-10 92.6 -5.8 192 67-295 140-350 (419)
57 PF12799 LRR_4: Leucine Rich r 97.3 0.00024 5.2E-09 58.2 3.6 40 191-230 1-41 (44)
58 KOG3665 ZYG-1-like serine/thre 97.2 0.00018 4E-09 90.0 3.1 105 167-271 147-263 (699)
59 PRK15386 type III secretion pr 97.2 0.0016 3.4E-08 76.9 10.3 42 83-128 48-89 (426)
60 PRK15386 type III secretion pr 97.0 0.0014 3.1E-08 77.2 7.7 18 108-125 49-66 (426)
61 KOG2120 SCF ubiquitin ligase, 96.9 0.00022 4.9E-09 79.6 0.3 172 65-268 187-373 (419)
62 KOG2123 Uncharacterized conser 96.7 7.8E-05 1.7E-09 82.5 -5.3 79 168-247 19-99 (388)
63 KOG3665 ZYG-1-like serine/thre 96.7 0.00082 1.8E-08 84.4 2.5 128 168-296 122-263 (699)
64 KOG2739 Leucine-rich acidic nu 96.2 0.003 6.5E-08 69.8 3.2 98 234-333 41-139 (260)
65 PF13306 LRR_5: Leucine rich r 95.5 0.044 9.6E-07 53.1 7.7 113 166-285 10-128 (129)
66 KOG3763 mRNA export factor TAP 95.2 0.0062 1.4E-07 73.1 0.7 90 233-325 215-314 (585)
67 PF13306 LRR_5: Leucine rich r 93.7 0.14 2.9E-06 49.7 6.0 110 82-230 7-119 (129)
68 KOG4308 LRR-containing protein 93.7 0.0025 5.5E-08 76.9 -7.4 181 89-298 89-305 (478)
69 KOG4308 LRR-containing protein 92.7 0.0064 1.4E-07 73.5 -5.9 72 76-147 104-184 (478)
70 KOG1947 Leucine rich repeat pr 92.3 0.12 2.5E-06 60.9 4.0 39 83-121 184-224 (482)
71 PF00560 LRR_1: Leucine Rich R 87.9 0.3 6.6E-06 34.2 1.4 21 169-189 1-21 (22)
72 KOG4341 F-box protein containi 87.6 0.35 7.6E-06 57.1 2.6 229 82-319 185-435 (483)
73 KOG0473 Leucine-rich repeat pr 85.2 0.039 8.5E-07 60.5 -6.2 86 209-296 38-124 (326)
74 KOG4341 F-box protein containi 82.8 0.27 5.9E-06 58.0 -1.2 137 191-327 268-418 (483)
75 PF00560 LRR_1: Leucine Rich R 82.1 0.55 1.2E-05 32.9 0.5 19 112-131 1-19 (22)
76 KOG0473 Leucine-rich repeat pr 79.5 0.095 2.1E-06 57.6 -5.9 91 181-271 31-124 (326)
77 KOG1947 Leucine rich repeat pr 77.6 0.94 2E-05 53.4 0.9 107 190-296 187-308 (482)
78 PF13504 LRR_7: Leucine rich r 76.2 1.7 3.7E-05 28.8 1.5 16 169-184 2-17 (17)
79 PF13504 LRR_7: Leucine rich r 74.3 1.9 4.1E-05 28.6 1.3 14 259-272 2-15 (17)
80 TIGR00864 PCC polycystin catio 67.0 4 8.7E-05 58.0 3.2 37 264-301 1-37 (2740)
81 smart00370 LRR Leucine-rich re 65.8 5 0.00011 28.9 2.1 19 168-186 2-20 (26)
82 smart00369 LRR_TYP Leucine-ric 65.8 5 0.00011 28.9 2.1 19 168-186 2-20 (26)
83 KOG3864 Uncharacterized conser 63.6 1.2 2.5E-05 48.5 -2.2 32 192-223 102-135 (221)
84 smart00370 LRR Leucine-rich re 62.6 7 0.00015 28.1 2.4 19 257-275 1-19 (26)
85 smart00369 LRR_TYP Leucine-ric 62.6 7 0.00015 28.1 2.4 19 257-275 1-19 (26)
86 PF13516 LRR_6: Leucine Rich r 61.9 3.2 7E-05 29.4 0.5 22 110-131 1-22 (24)
87 KOG3763 mRNA export factor TAP 61.8 5.7 0.00012 48.8 2.8 76 255-333 215-293 (585)
88 smart00365 LRR_SD22 Leucine-ri 56.3 9.2 0.0002 28.4 2.1 17 191-207 2-18 (26)
89 smart00365 LRR_SD22 Leucine-ri 46.5 15 0.00033 27.2 1.9 18 213-230 2-19 (26)
90 KOG3864 Uncharacterized conser 44.0 15 0.00034 40.2 2.3 78 66-143 104-184 (221)
91 smart00364 LRR_BAC Leucine-ric 36.8 19 0.00041 26.9 1.1 17 169-185 3-19 (26)
92 PHA02858 EIF2a-like PKR inhibi 35.9 59 0.0013 30.9 4.4 70 827-901 6-79 (86)
93 PF15410 PH_9: Pleckstrin homo 34.2 39 0.00085 33.5 3.3 30 893-922 86-115 (119)
94 smart00368 LRR_RI Leucine rich 31.1 36 0.00077 25.3 1.8 16 111-126 2-17 (28)
No 1
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=100.00 E-value=2.7e-94 Score=833.49 Aligned_cols=1012 Identities=39% Similarity=0.537 Sum_probs=838.5
Q ss_pred ccchhHHHHHHHHhhcCCccccCCcEEEec-CCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHh
Q 001271 5 TGDRYLEKLVKFVEQQAGPLIEGSIVLKLN-PAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRIL 83 (1111)
Q Consensus 5 ~gd~yl~~li~~L~~~~~slL~~lk~L~Ls-~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L 83 (1111)
+||+|+.++..+|..+++.++.+..+|.|+ +..++....+|..++.|+.-..+.+.++|++.+.+.++.+.+.++...+
T Consensus 1 ~~d~~l~kLa~lLre~gD~lLsg~~tL~L~~p~l~~lnh~~l~s~~EL~lg~~g~~~~~f~a~~s~~ads~vl~qLq~i~ 80 (1096)
T KOG1859|consen 1 TGDRYLEKLANLLRENGDKLLSGTFTLKLNGPALLHLNHLRLISLRELELGLSGAPVDYFRAYVSDNADSRVLEQLQRIL 80 (1096)
T ss_pred CccHHHHHHHHHHHhcccceecceeEEEeccHHHHHHHHHHHHhhHHHhhccCCCCCceeEEecCCcccchHHHHHHHHH
Confidence 589999999999999999999999999999 6666666777888899998888999999999999999999999998888
Q ss_pred cCCCCCcEEEccCCCCCCCC-CccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhcccccccc
Q 001271 84 KLLTSLKVVSALPPPARDPT-PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (1111)
Q Consensus 84 ~~L~nLk~LdLs~N~Is~~i-P~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~ 162 (1111)
.-+++++.|.+-.-.-.+.. |-.+..|..|++|.|.+++|.. ..++..+.+.++.++++|.+.++++++...+.++.
T Consensus 81 d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 81 DFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDIS 158 (1096)
T ss_pred HHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccc
Confidence 88899999888776665555 8889999999999999999976 67899999999999999999999999999999999
Q ss_pred CCCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEee
Q 001271 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (1111)
Q Consensus 163 ~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~ 242 (1111)
+.+.|..|...++++|.|..++.++.-++.|+.|+|++|+++.+..+..|+.|++|||++|.++.++.+...-..|..|+
T Consensus 159 ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred cchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776656799999
Q ss_pred ccCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcC---CCCeeecCC
Q 001271 243 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA---HPAKLKVDG 319 (1111)
Q Consensus 243 LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~---~L~~L~Ldg 319 (1111)
|++|.++.+.++.++.+|+.|||++|-|.+...+..+..+..|+.|+|.|||++|.+++|...+.++. .+..+.|||
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDg 318 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDG 318 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecc
Confidence 99999999999999999999999999999988888899999999999999999999999999998887 788899999
Q ss_pred CcCChhHHHHHHHHHHhhccCCCCCCcCCCCCCCCCCCCCccchhccchhhhhccccccccccc--CCCCCCCCCccccc
Q 001271 320 KEISTRELWERQLIIARRQKRPAGFGFYSPAKGNADGDGNANRKRKKACRLASIESEEESTCVG--SDRESVSCDNEIES 397 (1111)
Q Consensus 320 N~It~~E~~~~~~l~~~~~~~p~~~g~~~p~k~~~~~eds~~rk~~k~~Rla~I~e~e~~t~~~--Sdees~s~d~~~~s 397 (1111)
..++..++|+.+.....+..+|..+++|.+++.....++++.++.+++.+++.+..+.+.+.+. |+.++..++-+..+
T Consensus 319 k~l~~~efwk~~s~~~hr~~~p~s~~~~S~a~~~~~~dgS~~~s~gki~tl~~ihs~~~s~~v~r~S~~e~at~DpE~~s 398 (1096)
T KOG1859|consen 319 KALGGREFWKRQSGVSHRSSRPASYGFYSPARSENTSDGSQFRSKGKIYTLASIHSEDESTYVNRISDCESATCDPEESS 398 (1096)
T ss_pred eeccchhhhhhhhheecCCCCCCCCCCCCchhccCCCccchhhhcCceeecccccchhhhheeccccccccccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999888877 78888877766543
Q ss_pred c--ccccCCcchhHHHHHHHHHHHHHhhhhhhHHHHhhhhhccccccccCCccccccccccccchhhhhhcCCCcccccc
Q 001271 398 K--EENVASDDDAEIIDLMSRVEHMKRERSILWLREFKEWMDHTSENFVDGSICSGATLMNCEEDNYIKNKRSQPHLAES 475 (1111)
Q Consensus 398 ~--ee~~~se~daeiael~sklE~lkKe~g~~WL~efkew~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1111)
. .+.+....++...+++.++++++++++..|+++|+|||+...+.+.+.......+..+++. .++.....+.+-..+
T Consensus 399 ~~~t~a~~f~q~~pe~el~s~~~hl~~~r~vl~lR~~~Ew~~~p~~~~~~~s~~sqpt~seq~~-~tk~rn~p~~e~~g~ 477 (1096)
T KOG1859|consen 399 EINTEAAKFSQEAPEFELISKVEHLKKERSVLWLREFKEWLDSPNEDFMDVSKTSQPTESEQKY-YTKLRNEPLHEGSGT 477 (1096)
T ss_pred cCCCccccccCCCchhhhccchHHHhhhhhHHHHHHHhhhhcCCchhhccccCCCCCcchhcCc-ccccCCCCcccccCC
Confidence 3 3444445555578999999999999999999999999999999999999998888888885 444444444444589
Q ss_pred ccccccceeccCCCCcccccccCCccccCcccccccccccccCCCCccCCCcCCCCCccccccccCCCCcCCccccccc-
Q 001271 476 SKYVSGSVQASGDESSTNILESENSYADMPTGLHAYQSFDHIGSLGITGGFSLPGIGRMELRQENEKPYLHDGAGAATV- 554 (1111)
Q Consensus 476 s~~~~~~~~~~~~~~~~n~~e~~~s~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 554 (1111)
.+|..+++...-..+.+|.+|..++|.|.-+|+..+++.....+.-.+..-..+...-.+++|..+.-+ ++++...
T Consensus 478 p~~tp~sl~~~i~~~p~~n~e~~~~~~~~~~g~~~e~~~e~~et~~et~~e~~~~~~et~ln~~~~~c~---legpp~~~ 554 (1096)
T KOG1859|consen 478 PRYTPGSLHHNISSTPTNNVELASTFDATITGIKSEANDESGETLYETCTEGEETNQETDLNQKHQLCT---LEGPPDRH 554 (1096)
T ss_pred CcCCCCccchhhccCcccchhhcccccccccchhhhcccccccccccccccchhhhhhhhccccceecc---ccCCcccc
Confidence 999999999988999999999999999999999999998877766666544444444456676655433 5555433
Q ss_pred ------ccccccCCCccccccccccccCCCCCCccCCccCCCCCCCCCCCCCcchhhhhhhhhhhHHHHHhhccce----
Q 001271 555 ------QSKSFHQDTFTIQDRRMVENIHESPLTPIDDITDAFSSSARPGSPPHYREDILHRRHNLVAEILQLSAES---- 624 (1111)
Q Consensus 555 ------~~~s~~~~~~~~~~~~~~~n~~~s~~~~~~~~~~~~~~~~~p~spp~~~~d~l~rr~~~~~e~lq~s~~~---- 624 (1111)
.+.|.+-.+|+++..+..|||+++.+ ++.+.-..+..|.||||||+|+|+||+||++||||++||+
T Consensus 555 ~~~~~l~vss~~l~e~~l~~a~~dE~~~m~tl----ea~q~e~~s~~~sSp~~~~kD~L~~r~~lsl~il~ic~d~~~~~ 630 (1096)
T KOG1859|consen 555 EELLRLYVSSSNLQEDPLSDAESDENGNMSTL----EAKQSETGSLTPSSPPHYQKDVLTRRANLSLEILQICADSRSIN 630 (1096)
T ss_pred hhhheeecccccccccchhhhhhhcccceeee----ecccccccccCCCCCCCccccccccchhHHHHHHHhCccccccc
Confidence 36778888999999999999999999 6666666778999999999999999999999999999999
Q ss_pred eeeeeCCCCCcCCccCCCCCCC--CccccccccCcccccCcccccccccccc-------cc-c-CCC-CCC--ccccc-c
Q 001271 625 YSVVSSDSKTSCSDDDFREYGP--SMLEVDQSINPEHEYSSAEVHSLLNLFE-------ED-H-NDQ-PHE--IDCQR-E 689 (1111)
Q Consensus 625 ~~~~s~~~~~s~s~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~-~~~-~~~--~~~~~-~ 689 (1111)
|+|+++|+.++|+++++++.+. ++.|++ ...+++..|++. .- | -+| +.| |---+ +
T Consensus 631 y~v~~~D~~ss~~e~en~ls~~~~~~~eq~----------~~~rdL~~~r~~i~~C~~cgt~F~~eqp~kg~~~kelr~p 700 (1096)
T KOG1859|consen 631 YSVASSDKQSSCSEVENYLSEELESNLEQI----------LLQRDLTENRISIYRCVNCGTQFLIEQPEKGSKIKELRCP 700 (1096)
T ss_pred ceeecccccchhhhhhhcccHhhhhhHhhh----------hhhhhhhccccceeeeccccccccccCcccccchhhhcCc
Confidence 9999999999999999999887 676643 344444444421 00 0 011 111 11111 2
Q ss_pred cc---cCcccCCCCCCCCccccchhhhhhhHhhc--cccceeeeecccccc--cchhhhhhhhccCCCcCCccccccccc
Q 001271 690 NC---KNNGFSAGGNDGEVDSSVNQEAHLLEKNK--RKHTRRVISLLKEQN--TVAKTEALQNLNGNLNISEADNVGEQG 762 (1111)
Q Consensus 690 ~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1111)
++ .+.+|.+|.|.-+-.+.|+|+.+|.+|+- |||++|.....++.. -+|+-+..--..- |.-+-
T Consensus 701 d~~k~~t~~v~~~~~s~~~~~~v~a~~rl~p~~~~~rkp~e~~~ap~~~es~~ci~kg~~shl~~a-------d~s~~-- 771 (1096)
T KOG1859|consen 701 DSRKVYTTNVTSGLHSLKPSGGVNAEPRLSPKMIVERKPVERLVAPINEESSNCIGKGEASHLSDA-------DISDS-- 771 (1096)
T ss_pred chhhcccccccccccccCCccceecccccCcchhhhccchhhhccccccccccccCccchhhhhhc-------ccCCc--
Confidence 22 37899999999777799999999999977 999999988777755 2222211111111 11110
Q ss_pred ceeeeccccccccccccccccc-ccccc--ccCccccceec-----ccchhhH-HHHhhcccccCCchhHhhccceEE-E
Q 001271 763 KHIFGLNYLLRTSDKKQTRENA-VMTPY--ISGIGSVAKFL-----SSVKEDF-VEDYFNKNVADSKSHETCMQYTVC-W 832 (1111)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~-----~~~~~~~-~~~~f~~~~~~~~~~e~c~~~~~~-~ 832 (1111)
+ ...++...--.+|. -.+.| -|-..+...|+ ......| ++.||-+..|++..-|+|+.|+.| +
T Consensus 772 ----~---e~~~~rDh~fw~ns~lp~~c~~~~~~~rs~~FLe~E~~~~~~e~~q~~~~~paklav~S~~~~c~~~vS~~~ 844 (1096)
T KOG1859|consen 772 ----D---EDNTIRDHEFWENSSLPHLCTSHDEVARSKSFLETEFGLLLAEQAQVEELFPAKLAVSSHVETCRSYVSCDV 844 (1096)
T ss_pred ----c---ccccccccchhccCCCCcccccchhhHHHHHHHHHHhhhhhhhhcccccccchhhccCCCCceeEEEecccc
Confidence 0 00000000011111 00000 01111111121 1113444 788999999999999999999999 9
Q ss_pred EEecCCcccceE-------EEEEeecCCeeEEEEEeeeecCCcccccccccccchhhHHHhhhccceEEEEEeecCcEEE
Q 001271 833 ILEQDFMHRGRE-------VAVLRSSENKFYVLLFGVTVDGTGSILNLLGCHKIEDIREVLIGLGLQVLRVSTEMGATYL 905 (1111)
Q Consensus 833 ~~~~~~~~~~~e-------~~~l~ss~~k~~~ll~~~~~d~~~~~~~~l~~~~~~~~~~v~~g~glq~~r~~~~~~~~~~ 905 (1111)
|+|.+++|+||| ++||++||||+||+|++|..|-.++.+++++.|-+.|+|.|.||||+|++
T Consensus 845 i~~~~sTyeqre~~a~~lq~~Ll~~sqd~l~~gl~g~S~~le~sa~s~~c~~~~~d~q~~~~~l~~~~~----------- 913 (1096)
T KOG1859|consen 845 ILQICSTYEQRETDAPQLQNVLLLSSQDKLYVGLVGVSTDLEKSALSALCSHFISDFQDVSVGLGLQKV----------- 913 (1096)
T ss_pred hhhhhchhhhcCCCchhhhheeecccccceeeeeccccchhhhhhcccccccchhhhhhhhhHHHHHHH-----------
Confidence 999999999999 99999999999999999999999999999999999999999999999864
Q ss_pred EEeccHHHHHHHhhheeeecccccCCccccchhhhHHHHHHHhhhcCCcceeeeeeeeeeEEecCCC-cceEE--eeEEE
Q 001271 906 LMTRSIEKSRQLFCTLQIFYLVSANDKCSLRSLEQVQVELFEKQICGGLKVGIFQYSMVLFWCSEDK-ESWLS--RSLFL 982 (1111)
Q Consensus 906 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~q~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~-~~~~~--rsl~~ 982 (1111)
.+|.+|+.+|++.||-+.++.|++|--++|..+.-+ +.|+. |+.||
T Consensus 914 -------------------------------~Les~~~~~~~~~~~~~~~~~i~hrl~~~f~~~~fkE~~e~f~~ra~lv 962 (1096)
T KOG1859|consen 914 -------------------------------LLESEATVFQPYKFNYSDFNDIDHRLKLYFYQRKFKEDGELFKWRAKLV 962 (1096)
T ss_pred -------------------------------HHhccchhhhccccccccccchhhhhhhhhhhhhhhhhhHHHHHHHHHh
Confidence 367889999999999999999999999999999988 99997 99999
Q ss_pred ec-CeEEEEecccccccCcccC-CCCCCcee---eecccccccc-------ceeeeeccCceEEEEeeecCCcccccccc
Q 001271 983 IE-GHVLVCIEDLMQFSSLSVD-VFSPPYYL---VDLCCSIDNV-------SEIVIDARETCCVSLAVQHSTSEFCPLVT 1050 (1111)
Q Consensus 983 ~~-~~~~~c~e~~~q~~~~~~~-~~~~~y~~---~d~~c~i~~~-------~e~v~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1111)
.| ++.++|-.++|+-..+|.| |..+||+. .++-|++.|| ..||.|++...|+.+..--. .+.
T Consensus 963 eG~~~~~~c~l~~~~~~flp~dDaa~sp~~~~~~a~s~~s~edi~p~~~~~~v~l~e~~~ls~lS~l~~~q------~~p 1036 (1096)
T KOG1859|consen 963 EGLVVMSNCKLYLMEAFFLPHDDAAKSPYQVVSVAVSRLSAEDILPWKLWGGVVLLEHDMLSTLSLLNYLQ------QIP 1036 (1096)
T ss_pred cCchhhhhhhhhhhHhhcccccccccCcccccchhhhhhhhhhcCCcCCCCceEEEeccccchHHHHHHHh------hCC
Confidence 99 9999999999999999875 45789998 7999999999 99999999988887432211 011
Q ss_pred ccccccccchhhhcccccccceeeeEEEeeccchhhHHHHHHHHHh-hccCCCCcccceec
Q 001271 1051 AASGVTACKKVAAIRTKRTYIGSLKWKFKWFSEEDLFNFVALVKAM-HAETTASPLQIRCV 1110 (1111)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1110 (1111)
. ..| .+.++ .+.+++||++=..-++.-+||+++..| |+..+.=|.-||.|
T Consensus 1037 l-~~q--------~~~~~-~vs~l~s~~w~l~~vc~~~l~al~~wi~~p~~~~F~~~lr~i 1087 (1096)
T KOG1859|consen 1037 L-PFQ--------SKLNH-QVSSLLSHQWELIAVCMPSLIALCNWICDPEKSSFPPSLRLI 1087 (1096)
T ss_pred c-hhh--------hhhcc-cchHHHHHHHHHHHHHHHhHHHHHhhccCchhccCchHHhhh
Confidence 1 234 67778 888999999888899999999999999 88888888877764
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=2.9e-23 Score=239.42 Aligned_cols=296 Identities=21% Similarity=0.205 Sum_probs=220.9
Q ss_pred ccCCcEEEecCCCccchHHhhhhcccchhhccCCC---------cccc-ccccccCCCCCcchhHHH-HhcCCCCCcEEE
Q 001271 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAP---------LDYL-RAYVSDLGDHRALEQLRR-ILKLLTSLKVVS 93 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~---------l~~L-rl~vLdLs~n~~L~~Lp~-~L~~L~nLk~Ld 93 (1111)
+.+++.++++.|.|..+|.-....-.|+.+..... +.++ -+..+||+.|. +.++|. .|..-.+|++|+
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEe
Confidence 44456666666666666643333222333222110 0111 11256777664 344444 456667899999
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccC----------
Q 001271 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD---------- 163 (1111)
Q Consensus 94 Ls~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~---------- 163 (1111)
|++|+|+......|..|.+|..|.|+.|.|+..++..|..|++|..|.|..|.|.-...+.+..++.+..
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc
Confidence 9999998888888888999999999999998888888888999999999999877666665555444332
Q ss_pred -----CCCCCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCC--CCcCCCCCCcEEECCCCCCCCcccccc-c
Q 001271 164 -----SPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAFSE-V 234 (1111)
Q Consensus 164 -----l~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L--~~L~~L~sL~~LdLS~N~Lt~L~~l~~-~ 234 (1111)
+-.+.++++|+|..|++..+.. ++.+|+.|+.|+||+|.|..+ +.+..+++|+.|+|++|+|+.+++... .
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~ 339 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV 339 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH
Confidence 2356788999999999998766 788999999999999999986 478888999999999999999887443 4
Q ss_pred cccceEeeccCCccCCc--ccCCCCCCCCEEEccCCCCCCCc--hhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcC
Q 001271 235 SCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFS--ELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA 310 (1111)
Q Consensus 235 L~sL~~L~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~--~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~ 310 (1111)
+..|++|+|++|+|..+ ..|..+.+|+.|||++|.|+-.- ....+.+|++|+.|.|.||+|. .+..+.|..++
T Consensus 340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk---~I~krAfsgl~ 416 (873)
T KOG4194|consen 340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK---SIPKRAFSGLE 416 (873)
T ss_pred HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee---ecchhhhccCc
Confidence 78899999999999988 36888999999999999886321 1246788999999999999985 44577889999
Q ss_pred CCCeeecCCCcCCh
Q 001271 311 HPAKLKVDGKEIST 324 (1111)
Q Consensus 311 ~L~~L~LdgN~It~ 324 (1111)
.|+.++|.+|.|..
T Consensus 417 ~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 417 ALEHLDLGDNAIAS 430 (873)
T ss_pred ccceecCCCCccee
Confidence 99999999998753
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=3.7e-23 Score=238.76 Aligned_cols=289 Identities=24% Similarity=0.228 Sum_probs=171.1
Q ss_pred cccCCcEEEecCCCccchHHhhhhcccchhhccCC-C----------ccccccccccCCCCCcc-hhHHHHhcCCCCCcE
Q 001271 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-P----------LDYLRAYVSDLGDHRAL-EQLRRILKLLTSLKV 91 (1111)
Q Consensus 24 lL~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~-~----------l~~Lrl~vLdLs~n~~L-~~Lp~~L~~L~nLk~ 91 (1111)
-+...+||.|+..+|.++|+.|..+++|++++..- . +..+| .+++.+|+.- .-+|..+-+|..|..
T Consensus 30 qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR--sv~~R~N~LKnsGiP~diF~l~dLt~ 107 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLR--SVIVRDNNLKNSGIPTDIFRLKDLTI 107 (1255)
T ss_pred HhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhH--HHhhhccccccCCCCchhccccccee
Confidence 36678999999999999999999999999975421 1 11111 1222222211 124555566666677
Q ss_pred EEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhc------------ccc-
Q 001271 92 VSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA------------SRI- 158 (1111)
Q Consensus 92 LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~------------~~I- 158 (1111)
|+|++|++. ..|..+..-+++-.|+||+|+|..++-.-+.+|..|+.|+|++|.+..|+.-.. +.+
T Consensus 108 lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 108 LDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred eecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh
Confidence 777777666 556666666666666666666655444455566666666666666555543211 000
Q ss_pred -ccccCCCC-------------------------CCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC-CcCC
Q 001271 159 -VEIKDSPQ-------------------------WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRK 211 (1111)
Q Consensus 159 -~~L~~l~~-------------------------L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~-~L~~ 211 (1111)
-.+..++. +.+|..++|+.|.|..+|+.+..+++|+.|+||+|+|+.+. ....
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~ 266 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGE 266 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHH
Confidence 11222233 34555556666666666666666666666666666666553 3334
Q ss_pred CCCCcEEECCCCCCCCccccccccccceEeeccCCccCC--cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEE
Q 001271 212 CVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT--LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNL 288 (1111)
Q Consensus 212 L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~--L~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L 288 (1111)
..+|++|+||.|+++.+|.....++.|+.|.+.+|+++- +| +++.+.+|+.+..++|.+.-+| +.+..++.|+.|
T Consensus 267 W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP--EglcRC~kL~kL 344 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP--EGLCRCVKLQKL 344 (1255)
T ss_pred HhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc--hhhhhhHHHHHh
Confidence 455666666666666666555555666666666665432 33 5666666666666666666665 456666777777
Q ss_pred EecCCCCCCCccchhhHhhhcCCCCeeecCCCc
Q 001271 289 WLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (1111)
Q Consensus 289 ~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~ 321 (1111)
.|+.|.+...| ..+..++.+..++|..|+
T Consensus 345 ~L~~NrLiTLP----eaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 345 KLDHNRLITLP----EAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred cccccceeech----hhhhhcCCcceeeccCCc
Confidence 77777765442 234455667777777664
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.8e-22 Score=233.01 Aligned_cols=284 Identities=21% Similarity=0.219 Sum_probs=183.5
Q ss_pred CCcEEEecCCCccch-HHhhhhcccchhhccCCC----cccc-----ccccccCCCCCcchhHHHHhcCCCCCcEEEccC
Q 001271 27 GSIVLKLNPAGLHYV-QSRLEALRELERLLAGAP----LDYL-----RAYVSDLGDHRALEQLRRILKLLTSLKVVSALP 96 (1111)
Q Consensus 27 ~lk~L~Ls~~~L~~L-p~~L~~L~~Le~L~~~~~----l~~L-----rl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~ 96 (1111)
-.+.|++++|.|..+ ++.+.++.+|..+..... +.++ .+..++|.+|.....-...++.++.|+.|||+.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 357899999999977 444567777766544321 1111 122456666655444456788899999999999
Q ss_pred CCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEcc
Q 001271 97 PPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCS 176 (1111)
Q Consensus 97 N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls 176 (1111)
|.|+...-.+|..-.+|++|+|++|.|+......|..+.+|+.+-|+.|.+..++...+.. +++|+.|+|.
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~---------L~~L~~LdLn 229 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKR---------LPKLESLDLN 229 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhh---------cchhhhhhcc
Confidence 9999766667877789999999999999888888999999999999999999888765543 4456666666
Q ss_pred CCccccch-hhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccCCccCCc-
Q 001271 177 CNRLVIMD-ESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL- 251 (1111)
Q Consensus 177 ~N~LssLP-~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~N~Lt~L- 251 (1111)
.|+|..+. -.|.+|++|+.|.|..|.|..+. .|..|.++++|+|..|+++.+.. ..+.+..|+.|+|+.|.|..+
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 66666442 24556666666666666666553 45555666666666666655443 233345566666666666555
Q ss_pred -ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCC
Q 001271 252 -RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (1111)
Q Consensus 252 -~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It 323 (1111)
..+..+++|+.|+|++|+|+.+++ ..|..+..|+.|+|+.|.+.. +....|..+.+|+.++|+.|.++
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l~~-~sf~~L~~Le~LnLs~Nsi~~---l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRLDE-GSFRVLSQLEELNLSHNSIDH---LAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred cchhhhcccceeEeccccccccCCh-hHHHHHHHhhhhcccccchHH---HHhhHHHHhhhhhhhcCcCCeEE
Confidence 345555666666666666666554 455555555555555555542 22334555555555555555543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=1.6e-20 Score=239.53 Aligned_cols=241 Identities=21% Similarity=0.184 Sum_probs=114.6
Q ss_pred cccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCC
Q 001271 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (1111)
Q Consensus 67 vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~ 146 (1111)
.++|++|+..+.+|. ..+++|++|+|++|.+.+.+|..++.+++|++|+|++|.+.+..|..+.++++|..+++.+|.
T Consensus 122 ~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 122 YLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred EEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence 344555544444442 235555555555555555555555555555555555555555555555555555555555554
Q ss_pred CccchhhhccccccccCCCCCCCccEEEccCCccc-cchhhhcCCCCCcEEEccCCCCCC-CC-CcCCCCCCcEEECCCC
Q 001271 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLGFN 223 (1111)
Q Consensus 147 L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Ls-sLP~~L~~L~nL~~LdLS~N~Ls~-L~-~L~~L~sL~~LdLS~N 223 (1111)
+... ++. .+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.+.+ ++ .+..+++|+.|+|++|
T Consensus 200 l~~~---~p~------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 200 LVGQ---IPR------ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred CcCc---CCh------HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 3211 000 1123345555555555554 444455555555555555555543 22 4445555555555555
Q ss_pred CCCC-ccccccccccceEeeccCCccCCc-c-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001271 224 NLRS-IAAFSEVSCHIVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (1111)
Q Consensus 224 ~Lt~-L~~l~~~L~sL~~L~LS~N~Lt~L-~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~ 300 (1111)
.+++ ++.....+++|+.|+|++|.+... + .+..+++|+.|+|++|.+....+ ..+..+++|+.|+|++|.+...
T Consensus 271 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~-- 347 (968)
T PLN00113 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNKFSGE-- 347 (968)
T ss_pred eeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCCCcCc--
Confidence 5443 222233344555555555554432 2 34445555555555555543322 3344555555555555554321
Q ss_pred chhhHhhhcCCCCeeecCCCcC
Q 001271 301 YRAQVFSYFAHPAKLKVDGKEI 322 (1111)
Q Consensus 301 ~r~~if~~l~~L~~L~LdgN~I 322 (1111)
.+..+..++.|+.++|++|.+
T Consensus 348 -~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 348 -IPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred -CChHHhCCCCCcEEECCCCee
Confidence 112233344455555555544
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=2.2e-20 Score=238.40 Aligned_cols=253 Identities=22% Similarity=0.203 Sum_probs=145.7
Q ss_pred cccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCC
Q 001271 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (1111)
Q Consensus 67 vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~ 146 (1111)
.+++++|...+.+|..+.++++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+..+.+|..+.+.+|+
T Consensus 288 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred EEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 34555555555555555566666666666666655556556666666666666666665566666666666666666665
Q ss_pred Ccc-chhhhc------------cccc-cc-cCCCCCCCccEEEccCCccc-cchhhhcCCCCCcEEEccCCCCCCC-C-C
Q 001271 147 TNA-LRHVFA------------SRIV-EI-KDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAKV-D-N 208 (1111)
Q Consensus 147 L~s-L~~l~~------------~~I~-~L-~~l~~L~~L~~L~Ls~N~Ls-sLP~~L~~L~nL~~LdLS~N~Ls~L-~-~ 208 (1111)
+.. ++..+. +.+. .+ ..+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+.+. + .
T Consensus 368 l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 447 (968)
T PLN00113 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR 447 (968)
T ss_pred eEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh
Confidence 432 111110 0000 00 01234566777777777776 5566677777777777777777653 2 3
Q ss_pred cCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCc-c-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCc
Q 001271 209 LRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLL 286 (1111)
Q Consensus 209 L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L-~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~ 286 (1111)
+..+++|+.|+|++|.+.+..+.....++|+.|+|++|+++.. + .+..+++|+.|+|++|.+....+ ..+..+++|+
T Consensus 448 ~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~ 526 (968)
T PLN00113 448 KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP-DELSSCKKLV 526 (968)
T ss_pred hccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC-hHHcCccCCC
Confidence 4556666777777666654333222345666677777766644 2 45566666777777776664332 4556666667
Q ss_pred EEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCC
Q 001271 287 NLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (1111)
Q Consensus 287 ~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It 323 (1111)
.|+|++|.++.. .+..+..++.|+.++|++|.+.
T Consensus 527 ~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 527 SLDLSHNQLSGQ---IPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred EEECCCCccccc---CChhHhCcccCCEEECCCCccc
Confidence 777777666533 1233455566666666666664
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=4.8e-21 Score=221.47 Aligned_cols=258 Identities=21% Similarity=0.221 Sum_probs=203.8
Q ss_pred ccCCcEEEecCCCccchHHhhhhcccchhhcc----------CCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEc
Q 001271 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLA----------GAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSA 94 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~----------~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdL 94 (1111)
+..+..|+|+.|.|+.+|..|...+++-.+.. ....+..+++.+||++|+ +..+|+.+..|.+|+.|.|
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhc
Confidence 56688999999999999999877765433211 111222334456666654 5666666677777777777
Q ss_pred cCCCCCCCCCccCCCCCCCCEEEeeCCCCC-ccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEE
Q 001271 95 LPPPARDPTPLSLLPFCRLKVLELRGCDLS-TSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFV 173 (1111)
Q Consensus 95 s~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls-~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L 173 (1111)
++|.+....-..+..+++|++|.+++.+-+ ..+|..+..+.+|..++++.|++..++..+. ++++|+.|
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly----------~l~~LrrL 250 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLY----------KLRNLRRL 250 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHh----------hhhhhhee
Confidence 777665433334445566667777666544 3467888888888889999998887776554 36799999
Q ss_pred EccCCccccchhhhcCCCCCcEEEccCCCCCCCC-CcCCCCCCcEEECCCCCCC--CccccccccccceEeeccCCccCC
Q 001271 174 SCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLR--SIAAFSEVSCHIVKLVLRNNALTT 250 (1111)
Q Consensus 174 ~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS~N~Lt--~L~~l~~~L~sL~~L~LS~N~Lt~ 250 (1111)
+|++|+|+.+....+...+|++|+||+|+++.+| ++.+++.|+.|++.+|+++ ++|...+.+.+|+.+..++|.+.-
T Consensus 251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl 330 (1255)
T KOG0444|consen 251 NLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL 330 (1255)
T ss_pred ccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc
Confidence 9999999988778888899999999999999987 7899999999999999876 788888888999999999999998
Q ss_pred cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCC
Q 001271 251 LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295 (1111)
Q Consensus 251 L~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpL 295 (1111)
+| ++..|+.|+.|.|++|++..+| +.+.-++.|..|+|..||=
T Consensus 331 VPEglcRC~kL~kL~L~~NrLiTLP--eaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDHNRLITLP--EAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred CchhhhhhHHHHHhcccccceeech--hhhhhcCCcceeeccCCcC
Confidence 85 8999999999999999999999 6788899999999999984
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=1.6e-19 Score=202.12 Aligned_cols=264 Identities=24% Similarity=0.290 Sum_probs=170.1
Q ss_pred ccCCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCc----------chhHHH-HhcCCCCCcEEE
Q 001271 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRA----------LEQLRR-ILKLLTSLKVVS 93 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~----------L~~Lp~-~L~~L~nLk~Ld 93 (1111)
+..++.|+...|-+..+|+.+..|+.|+.++... +.++..+ .+.+|.. ++.+|. .+.++++|.+||
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~--Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRR--NKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhh--cccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 5667899999999999999999999999886632 1122222 4555544 444566 455999999999
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhcc-----------------
Q 001271 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFAS----------------- 156 (1111)
Q Consensus 94 Ls~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~----------------- 156 (1111)
|..|++. ..|..+.-+++|.+||||+|.|++ .|..++++ +|..+-+.+|.+.+++.-+.+
T Consensus 259 LRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d 335 (565)
T KOG0472|consen 259 LRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD 335 (565)
T ss_pred ccccccc-cCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence 9999998 789999999999999999999987 67789999 888888999987766542110
Q ss_pred ccc----------c-----ccCCCCCC--------------------------CccEEEccCCccccchhhh--------
Q 001271 157 RIV----------E-----IKDSPQWN--------------------------RLSFVSCSCNRLVIMDESL-------- 187 (1111)
Q Consensus 157 ~I~----------~-----L~~l~~L~--------------------------~L~~L~Ls~N~LssLP~~L-------- 187 (1111)
++. . ..+.-.+. -.+.++++.|+|.++|..+
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT 415 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVT 415 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHH
Confidence 000 0 00000011 2445566666666555332
Q ss_pred ----------------cCCCCCcEEEccCCCCCCCC-CcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCC
Q 001271 188 ----------------QLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT 250 (1111)
Q Consensus 188 ----------------~~L~nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~ 250 (1111)
..+++|..|+|++|.+..+| .++.+..|+.|++++|++..+|.....+..|+.+-.++|++..
T Consensus 416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGS 495 (565)
T ss_pred HHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccc
Confidence 34455555555555555554 4445555555555555555555443333444444445555555
Q ss_pred cc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCC
Q 001271 251 LR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (1111)
Q Consensus 251 L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs 296 (1111)
++ ++.++.+|..|||.+|.|..+| ..+++|.+|++|.|.||||.
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdlq~IP--p~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDLQQIP--PILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cChHHhhhhhhcceeccCCCchhhCC--hhhccccceeEEEecCCccC
Confidence 52 3566666666666666666666 35666666666666666664
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=4.7e-20 Score=206.38 Aligned_cols=241 Identities=27% Similarity=0.307 Sum_probs=185.4
Q ss_pred cCCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCc
Q 001271 26 EGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPL 105 (1111)
Q Consensus 26 ~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~ 105 (1111)
..+.+|.+..+.+..+|+.+..+..+.. ++.++| .+.++|+.+..+.+|+.|+++.|.+. .+|+
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~--------------l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~ 131 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGELEALKS--------------LNVSHN-KLSELPEQIGSLISLVKLDCSSNELK-ELPD 131 (565)
T ss_pred cceeEEEeccchhhhCCHHHHHHHHHHH--------------hhcccc-hHhhccHHHhhhhhhhhhhcccccee-ecCc
Confidence 3345555555555555555555544332 223333 35667777777788888888888776 5666
Q ss_pred cCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccccchh
Q 001271 106 SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE 185 (1111)
Q Consensus 106 sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~ 185 (1111)
.++.+..|+.|+..+|+++. .|.++.++..+..+++.+|++..++.... .|+.|++|++..|-++.+|+
T Consensus 132 ~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i----------~m~~L~~ld~~~N~L~tlP~ 200 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHI----------AMKRLKHLDCNSNLLETLPP 200 (565)
T ss_pred hHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHH----------HHHHHHhcccchhhhhcCCh
Confidence 77777788888888888765 56677777777777777777666654332 26788999999999999999
Q ss_pred hhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCcccccc-ccccceEeeccCCccCCcc-cCCCCCCCCEE
Q 001271 186 SLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSE-VSCHIVKLVLRNNALTTLR-GIENLKSLEGL 263 (1111)
Q Consensus 186 ~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~-~L~sL~~L~LS~N~Lt~L~-~L~~L~sL~~L 263 (1111)
.++.+.+|..|+|.+|+|..+|.|.++..|..|+++.|.|..++.... .+++|..|+|..|+++.+| .+.-+.+|..|
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERL 280 (565)
T ss_pred hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhh
Confidence 999999999999999999999999999999999999999988887544 6788999999999999986 67778889999
Q ss_pred EccCCCCCCCchhhhhcCCCCCcEEEecCCCCC
Q 001271 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (1111)
Q Consensus 264 dLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs 296 (1111)
|+++|.|+.+| ..++++ .|+.|-+.|||+.
T Consensus 281 DlSNN~is~Lp--~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 281 DLSNNDISSLP--YSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred cccCCccccCC--cccccc-eeeehhhcCCchH
Confidence 99999999988 578888 8999999999984
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=6e-17 Score=200.83 Aligned_cols=270 Identities=19% Similarity=0.197 Sum_probs=204.4
Q ss_pred HhhcCCccccCCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccC
Q 001271 17 VEQQAGPLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALP 96 (1111)
Q Consensus 17 L~~~~~slL~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~ 96 (1111)
+.+..+.+..+...|+++.+++..+|..+. ..| ..++|++|+ +..+|..+. ++|+.|+|++
T Consensus 169 ~~r~~~Cl~~~~~~L~L~~~~LtsLP~~Ip--~~L--------------~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~ 229 (754)
T PRK15370 169 VQRMRDCLKNNKTELRLKILGLTTIPACIP--EQI--------------TTLILDNNE-LKSLPENLQ--GNIKTLYANS 229 (754)
T ss_pred HHHHHhhcccCceEEEeCCCCcCcCCcccc--cCC--------------cEEEecCCC-CCcCChhhc--cCCCEEECCC
Confidence 334445566777899999999999887542 111 235566664 456776543 6899999999
Q ss_pred CCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEcc
Q 001271 97 PPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCS 176 (1111)
Q Consensus 97 N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls 176 (1111)
|.++ .+|..+. .+|+.|+|++|.+.. +|..+. ..|..|.+++|++..++..+ .++|+.|+|+
T Consensus 230 N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~LP~~l------------~~sL~~L~Ls 291 (754)
T PRK15370 230 NQLT-SIPATLP--DTIQEMELSINRITE-LPERLP--SALQSLDLFHNKISCLPENL------------PEELRYLSVY 291 (754)
T ss_pred Cccc-cCChhhh--ccccEEECcCCccCc-CChhHh--CCCCEEECcCCccCcccccc------------CCCCcEEECC
Confidence 9998 5676554 589999999999985 666654 36778889999887765422 1379999999
Q ss_pred CCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcccCCC
Q 001271 177 CNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIEN 256 (1111)
Q Consensus 177 ~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~ 256 (1111)
+|+|+.+|..+. ++|+.|+|++|.++.++.. ..++|+.|++++|.|+.++... .++|+.|+|++|+|+.+|.- -
T Consensus 292 ~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~-l 365 (754)
T PRK15370 292 DNSIRTLPAHLP--SGITHLNVQSNSLTALPET-LPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPET-L 365 (754)
T ss_pred CCccccCcccch--hhHHHHHhcCCccccCCcc-ccccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChh-h
Confidence 999999987553 5799999999999988632 2378999999999999987643 37999999999999988631 1
Q ss_pred CCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChhHHHHHHHH
Q 001271 257 LKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLI 333 (1111)
Q Consensus 257 L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E~~~~~~l 333 (1111)
.++|+.|+|++|.|+.+|+ .+. ..|+.|++++|.+...+...+..+..++.+..+.|.+|+++.......+.+
T Consensus 366 p~~L~~LdLs~N~Lt~LP~--~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~~L 438 (754)
T PRK15370 366 PPTITTLDVSRNALTNLPE--NLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRL 438 (754)
T ss_pred cCCcCEEECCCCcCCCCCH--hHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHHHHh
Confidence 3789999999999999984 332 369999999999987665444455556778899999999986554444333
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=5.7e-16 Score=191.71 Aligned_cols=261 Identities=20% Similarity=0.193 Sum_probs=155.4
Q ss_pred hcCCccccCCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCC
Q 001271 19 QQAGPLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPP 98 (1111)
Q Consensus 19 ~~~~slL~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~ 98 (1111)
...+.+-.+..+|+|+.++|..+|..+.. +|+. +++.+|+ +..+|.. +++|++|+|++|+
T Consensus 194 r~~~Cl~~~~~~LdLs~~~LtsLP~~l~~--~L~~--------------L~L~~N~-Lt~LP~l---p~~Lk~LdLs~N~ 253 (788)
T PRK15387 194 KMRACLNNGNAVLNVGESGLTTLPDCLPA--HITT--------------LVIPDNN-LTSLPAL---PPELRTLEVSGNQ 253 (788)
T ss_pred HHHHHhcCCCcEEEcCCCCCCcCCcchhc--CCCE--------------EEccCCc-CCCCCCC---CCCCcEEEecCCc
Confidence 33345556678999999999999976642 2222 2334333 3344432 5677788887777
Q ss_pred CCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhc---------cccccccCCCCCCC
Q 001271 99 ARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA---------SRIVEIKDSPQWNR 169 (1111)
Q Consensus 99 Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~---------~~I~~L~~l~~L~~ 169 (1111)
|+. +|.. .++|+.|+|++|.|+. +|..+ ..|..+.+.+|++..++.... +.+..++.+ ...
T Consensus 254 Lts-LP~l---p~sL~~L~Ls~N~L~~-Lp~lp---~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~l--p~~ 323 (788)
T PRK15387 254 LTS-LPVL---PPGLLELSIFSNPLTH-LPALP---SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL--PSE 323 (788)
T ss_pred cCc-ccCc---ccccceeeccCCchhh-hhhch---hhcCEEECcCCccccccccccccceeECCCCccccCCCC--ccc
Confidence 773 4432 3567777777777654 33222 233445556665554432110 000000000 113
Q ss_pred ccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccC
Q 001271 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 249 (1111)
Q Consensus 170 L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt 249 (1111)
|+.|++++|+|+.+|.. ..+|+.|+|++|+|+.+|.+ ..+|+.|++++|.|+.++.. ..+|+.|+|++|.|+
T Consensus 324 L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 324 LCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT 395 (788)
T ss_pred ccccccccCcccccccc---ccccceEecCCCccCCCCCC--CcccceehhhccccccCccc---ccccceEEecCCccc
Confidence 44455555555544421 13566777777777666543 34566677777777666543 246778888888887
Q ss_pred CcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChhHHH
Q 001271 250 TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELW 328 (1111)
Q Consensus 250 ~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E~~ 328 (1111)
.+|.+ .++|+.|+|++|.|+.+|. . ..+|+.|+|++|.|+..+ ..+..+..+..++|.+|+++.....
T Consensus 396 ~LP~l--~s~L~~LdLS~N~LssIP~--l---~~~L~~L~Ls~NqLt~LP----~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 396 SLPVL--PSELKELMVSGNRLTSLPM--L---PSGLLSLSVYRNQLTRLP----ESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCCCc--ccCCCEEEccCCcCCCCCc--c---hhhhhhhhhccCcccccC----hHHhhccCCCeEECCCCCCCchHHH
Confidence 77643 3578888888888887763 1 246778888888887443 2355678899999999999865433
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=3e-16 Score=194.21 Aligned_cols=235 Identities=20% Similarity=0.158 Sum_probs=173.0
Q ss_pred ccCCcEEEecCCCccchHHhhhhcccchhhccCCCcccc-----ccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCC
Q 001271 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYL-----RAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPA 99 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~L-----rl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~I 99 (1111)
...++.|.+..|.|..+|..+..|+.|..-. +.+..+ .+..+++.+|. +..+|.. +.+|+.|+|++|++
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~--N~LtsLP~lp~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~L 294 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPALPPELRTLEVSG--NQLTSLPVLPPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQL 294 (788)
T ss_pred hcCCCEEEccCCcCCCCCCCCCCCcEEEecC--CccCcccCcccccceeeccCCc-hhhhhhc---hhhcCEEECcCCcc
Confidence 3457889999999998887555555443211 111111 22345666654 4556654 35677888888888
Q ss_pred CCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCc
Q 001271 100 RDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNR 179 (1111)
Q Consensus 100 s~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~ 179 (1111)
+ .+|.. +++|+.|+|++|.|++ +|... ..|..+.+.+|++..++.+ ..+|+.|+|++|+
T Consensus 295 t-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~LP~l-------------p~~Lq~LdLS~N~ 353 (788)
T PRK15387 295 T-SLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTSLPTL-------------PSGLQELSVSDNQ 353 (788)
T ss_pred c-ccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCcccccccc-------------ccccceEecCCCc
Confidence 7 34542 4678888998888876 34322 2345566777776655431 1379999999999
Q ss_pred cccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcccCCCCCC
Q 001271 180 LVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKS 259 (1111)
Q Consensus 180 LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~L~s 259 (1111)
|+.+|.. .++|+.|++++|+|..++.+ +.+|+.|+|++|.|+.++.. .++|+.|+|++|.|+.+|.+ +.+
T Consensus 354 Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l--~~~ 423 (788)
T PRK15387 354 LASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML--PSG 423 (788)
T ss_pred cCCCCCC---CcccceehhhccccccCccc--ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc--hhh
Confidence 9999864 46788999999999998754 36899999999999988764 36899999999999998754 457
Q ss_pred CCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001271 260 LEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (1111)
Q Consensus 260 L~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~ 298 (1111)
|+.|+|++|+|+.+| ..+..+++|+.|+|++|+|+..
T Consensus 424 L~~L~Ls~NqLt~LP--~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 424 LLSLSVYRNQLTRLP--ESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhhhhccCcccccC--hHHhhccCCCeEECCCCCCCch
Confidence 999999999999998 5688999999999999999854
No 13
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.66 E-value=3.2e-17 Score=178.34 Aligned_cols=300 Identities=25% Similarity=0.341 Sum_probs=220.5
Q ss_pred HhhcCCccccCCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccC
Q 001271 17 VEQQAGPLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALP 96 (1111)
Q Consensus 17 L~~~~~slL~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~ 96 (1111)
+-..+++++..-+...+.+..+..+.++|..-+ |.. ++-++-..++. .+.-+..|++|-.++
T Consensus 130 ~~e~g~~ll~~~~~~~~~~l~~yaise~l~~~~---------p~~------~~~~~k~d~~h---ildf~~~l~~l~vs~ 191 (490)
T KOG1259|consen 130 FNESGDALLSSKKEYNLSALEVYAISERLSLPC---------PPS------LDRGGKYDFSH---VLDFCTQLVALVVTP 191 (490)
T ss_pred HHhhhHHHhccCceecccchhhhhHHHHhcCCC---------CCc------cCCCCccchHH---HHHhhhheeEEEecC
Confidence 334566677777888888888888887754332 211 11122222333 333466777777654
Q ss_pred --------CCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhh-hhhhhhhccCCCccchhhhcccc---------
Q 001271 97 --------PPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELR-HTLEKIICHNSTNALRHVFASRI--------- 158 (1111)
Q Consensus 97 --------N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~-~LleLlLs~N~L~sL~~l~~~~I--------- 158 (1111)
|-+...+|..+.-+++|+.+.++.|.-..+ .++..++ .|.++...+..+...+.+.+...
T Consensus 192 ~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i--~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~ 269 (490)
T KOG1259|consen 192 VKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENI--VDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEP 269 (490)
T ss_pred CCCCCccccccccccccchHHhhhhheeeeeccchhhe--eceeecCchhheeeeecccccccccccchhhhcCccCCCC
Confidence 333345566667778888888888754321 1122121 22222222222222222211100
Q ss_pred -----ccccCCCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCcccccc
Q 001271 159 -----VEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSE 233 (1111)
Q Consensus 159 -----~~L~~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~ 233 (1111)
+-...+..|..|+.|+|++|.|+.+++++.-+|.++.|++|+|.|..+..+..+++|+.|||++|.++.+.....
T Consensus 270 ~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~ 349 (490)
T KOG1259|consen 270 STSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHL 349 (490)
T ss_pred CccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHh
Confidence 112235678999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred ccccceEeeccCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCC-C
Q 001271 234 VSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH-P 312 (1111)
Q Consensus 234 ~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~-L 312 (1111)
.+.++++|.|+.|.|..+.++..+-+|..||++.|+|..+..+..++++|-|+.|.|.+||+...++||..+++.|-. -
T Consensus 350 KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERa 429 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGERA 429 (490)
T ss_pred hhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHHhhhh
Confidence 789999999999999999999999999999999999999998899999999999999999999999999999887744 4
Q ss_pred CeeecCCCcCChhHHHHHHHHHHh
Q 001271 313 AKLKVDGKEISTRELWERQLIIAR 336 (1111)
Q Consensus 313 ~~L~LdgN~It~~E~~~~~~l~~~ 336 (1111)
..+.||+.+-+..|.....++.+-
T Consensus 430 SE~~LD~~~~~~~ELDTV~Vl~Al 453 (490)
T KOG1259|consen 430 SEISLDNEPGNQQELDTVLVLSAL 453 (490)
T ss_pred hheecCCCCcchhhhhHHHHHHHH
Confidence 568999999888887766655443
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=2.1e-17 Score=200.00 Aligned_cols=268 Identities=21% Similarity=0.184 Sum_probs=193.2
Q ss_pred CCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCcc
Q 001271 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (1111)
Q Consensus 27 ~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~s 106 (1111)
++..++++.+.+..+|+.+..+.+|+.+. ..+|+ +..+|..+..+.+|+.|.+..|.+. -+|+.
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~--------------~n~N~-l~~lp~ri~~~~~L~~l~~~~nel~-yip~~ 305 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALN--------------ANHNR-LVALPLRISRITSLVSLSAAYNELE-YIPPF 305 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEec--------------ccchh-HHhhHHHHhhhhhHHHHHhhhhhhh-hCCCc
Confidence 34566666666666665555555555432 22332 4666777777777777777777776 46666
Q ss_pred CCCCCCCCEEEeeCCCCCccchhhHhhhhh-hhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccc-cch
Q 001271 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRH-TLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMD 184 (1111)
Q Consensus 107 Ls~L~nL~~LdLS~N~Ls~~~P~~L~~L~~-LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Ls-sLP 184 (1111)
+..++.|++|+|..|+|...++..+.-+.. +..+..+.|.+..++..- -..+..|+.|+|.+|.|+ ..-
T Consensus 306 le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~---------e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE---------ENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc---------chhhHHHHHHHHhcCcccccch
Confidence 777888888888888886543323322222 333344555554444211 123457999999999999 344
Q ss_pred hhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcccCCCCCCCCE
Q 001271 185 ESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEG 262 (1111)
Q Consensus 185 ~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~ 262 (1111)
+.+.++++|+.|+|++|+|..+| .+.++..|+.|+||+|+++.++.....++.|++|...+|+|..+|.+..++.|+.
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~ 456 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKV 456 (1081)
T ss_pred hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceE
Confidence 57788999999999999999987 6889999999999999999999877788999999999999999999999999999
Q ss_pred EEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCC
Q 001271 263 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (1111)
Q Consensus 263 LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It 323 (1111)
+||+.|.|+.+.- ......++|++|+|+||.... +....|..++.+..++++-++.+
T Consensus 457 lDlS~N~L~~~~l-~~~~p~p~LkyLdlSGN~~l~---~d~~~l~~l~~l~~~~i~~~~~~ 513 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTL-PEALPSPNLKYLDLSGNTRLV---FDHKTLKVLKSLSQMDITLNNTP 513 (1081)
T ss_pred Eecccchhhhhhh-hhhCCCcccceeeccCCcccc---cchhhhHHhhhhhheecccCCCC
Confidence 9999999987553 233334899999999998532 23445666777777777766433
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=8.5e-17 Score=194.75 Aligned_cols=279 Identities=20% Similarity=0.201 Sum_probs=185.7
Q ss_pred CcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccC
Q 001271 28 SIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSL 107 (1111)
Q Consensus 28 lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sL 107 (1111)
++.|+++++.+...|..+..+.+|+.+... ++.+..+|..+.++.+|++|.|.+|.+. ..|.++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s---------------~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~ 110 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLS---------------RNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASI 110 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccc---------------hhhHhhCchhhhhhhcchhheeccchhh-cCchhH
Confidence 789999999999999999888888775432 2234445555566666666666665554 556666
Q ss_pred CCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhcc-----------------------------------------CC
Q 001271 108 LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH-----------------------------------------NS 146 (1111)
Q Consensus 108 s~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~-----------------------------------------N~ 146 (1111)
..+++|++|++++|.+.. +|..+..+..+.++..++ |.
T Consensus 111 ~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~ 189 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNE 189 (1081)
T ss_pred HhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccch
Confidence 666666666666666543 344444443333333333 33
Q ss_pred Cccch--------hhh----------------------ccccccccCCCCCCCccEEEccCCccccchhhhcCCCCCcEE
Q 001271 147 TNALR--------HVF----------------------ASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETL 196 (1111)
Q Consensus 147 L~sL~--------~l~----------------------~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~L 196 (1111)
+..+. .+. .+.+..+...+.-.+|++++++.|+++.+|++++.+.+|+.|
T Consensus 190 ~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l 269 (1081)
T KOG0618|consen 190 MEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEAL 269 (1081)
T ss_pred hhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEe
Confidence 22000 000 000111111233357899999999999999999999999999
Q ss_pred EccCCCCCCC-----------------------C-CcCCCCCCcEEECCCCCCCCcccccc-------------------
Q 001271 197 DLSRNKFAKV-----------------------D-NLRKCVNLKHLDLGFNNLRSIAAFSE------------------- 233 (1111)
Q Consensus 197 dLS~N~Ls~L-----------------------~-~L~~L~sL~~LdLS~N~Lt~L~~l~~------------------- 233 (1111)
++.+|.|..+ + .+.++++|++|+|..|+|..+|....
T Consensus 270 ~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~ 349 (1081)
T KOG0618|consen 270 NANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST 349 (1081)
T ss_pred cccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc
Confidence 9998887652 1 24457889999999998887664211
Q ss_pred -------ccccceEeeccCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccch--
Q 001271 234 -------VSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYR-- 302 (1111)
Q Consensus 234 -------~L~sL~~L~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r-- 302 (1111)
.++.|+.|.|.+|.++.- |.+.++++|+.|+|++|+|..+|. ..+.+++.|+.|+|+||.++..+.-.
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa-s~~~kle~LeeL~LSGNkL~~Lp~tva~ 428 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA-SKLRKLEELEELNLSGNKLTTLPDTVAN 428 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH-HHHhchHHhHHHhcccchhhhhhHHHHh
Confidence 124577888888888874 788899999999999999999997 77899999999999999987543100
Q ss_pred ----------------hhHhhhcCCCCeeecCCCcCCh
Q 001271 303 ----------------AQVFSYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 303 ----------------~~if~~l~~L~~L~LdgN~It~ 324 (1111)
..-+..++.++.++|+.|.++.
T Consensus 429 ~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred hhhhHHHhhcCCceeechhhhhcCcceEEecccchhhh
Confidence 0013455666777777776653
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=3.5e-15 Score=185.29 Aligned_cols=228 Identities=20% Similarity=0.241 Sum_probs=176.8
Q ss_pred cccCCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCC
Q 001271 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPT 103 (1111)
Q Consensus 24 lL~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~i 103 (1111)
+...+..|+|+.|.+..+|..+. .+|+ .+++++|+ +..+|..+ .++|+.|+|++|.+. .+
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~--------------~L~Ls~N~-LtsLP~~l--~~~L~~L~Ls~N~L~-~L 256 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ--GNIK--------------TLYANSNQ-LTSIPATL--PDTIQEMELSINRIT-EL 256 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc--cCCC--------------EEECCCCc-cccCChhh--hccccEEECcCCccC-cC
Confidence 45568999999999999887553 2222 34566654 45666644 347999999999998 66
Q ss_pred CccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccccc
Q 001271 104 PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM 183 (1111)
Q Consensus 104 P~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssL 183 (1111)
|..+. .+|+.|+|++|+|+. +|..+. .+|..|.+++|++..++..++ ++|+.|++++|.|+.+
T Consensus 257 P~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp------------~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 257 PERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAHLP------------SGITHLNVQSNSLTAL 319 (754)
T ss_pred ChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCcccch------------hhHHHHHhcCCccccC
Confidence 77664 589999999999985 565553 367788899998876654321 3789999999999998
Q ss_pred hhhhcCCCCCcEEEccCCCCCCCCC-cCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCccc-CCCCCCCC
Q 001271 184 DESLQLLPAVETLDLSRNKFAKVDN-LRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRG-IENLKSLE 261 (1111)
Q Consensus 184 P~~L~~L~nL~~LdLS~N~Ls~L~~-L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~-L~~L~sL~ 261 (1111)
|..+ .++|+.|++++|.++.++. + .++|+.|+|++|+|+.++... .+.|+.|+|++|.|+.+|. +. .+|+
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~ 391 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQ 391 (754)
T ss_pred Cccc--cccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHH
Confidence 8755 3689999999999998873 3 378999999999999887633 3689999999999998863 32 4799
Q ss_pred EEEccCCCCCCCchh--hhhcCCCCCcEEEecCCCCC
Q 001271 262 GLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPLC 296 (1111)
Q Consensus 262 ~LdLS~N~Is~l~~l--~~L~~L~~L~~L~LsgNpLs 296 (1111)
.|++++|+|..+|.. ..+..++++..|+|.+|++.
T Consensus 392 ~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 392 IMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 999999999988741 23345688999999999997
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.55 E-value=2.2e-15 Score=157.12 Aligned_cols=158 Identities=29% Similarity=0.426 Sum_probs=67.4
Q ss_pred cCCccccchhhhcCCCCCcEEEccCCCCCCCCCcC-CCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcc-c
Q 001271 176 SCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-G 253 (1111)
Q Consensus 176 s~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~-~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~-~ 253 (1111)
..+.|..+|. +.+...+++|+|.+|.|+.++.++ .+.+|+.|+|++|.|+.+..+. .+++|+.|++++|+|+.+. .
T Consensus 5 t~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~-~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 5 TANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLP-GLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHH
T ss_pred cccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCcc-ChhhhhhcccCCCCCCccccc
Confidence 3344444432 334446788888888888887776 4778888888888888777644 3578888888888888874 4
Q ss_pred C-CCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChhHHHHHHH
Q 001271 254 I-ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQL 332 (1111)
Q Consensus 254 L-~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E~~~~~~ 332 (1111)
+ ..+++|+.|+|++|+|.++..+..+..+++|+.|+|.+||++..+.||..++..++ +...||+.+|+..|+..+..
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP--~Lk~LD~~~V~~~ER~~A~~ 160 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP--SLKVLDGQDVTEEERQEAEK 160 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T--T-SEETTEETTS-B------
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcC--hhheeCCEEccHHHhccccc
Confidence 4 35889999999999999998888899999999999999999999999999988775 55578899999999999988
Q ss_pred HHHhh
Q 001271 333 IIARR 337 (1111)
Q Consensus 333 l~~~~ 337 (1111)
+|..+
T Consensus 161 ~f~~~ 165 (175)
T PF14580_consen 161 LFKGK 165 (175)
T ss_dssp -----
T ss_pred ccccc
Confidence 88765
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=5.1e-14 Score=183.64 Aligned_cols=272 Identities=17% Similarity=0.196 Sum_probs=179.5
Q ss_pred ccCCcEEEecCCCccchHHhhhhcccchhhccCC-Cc--------cccccccccCCCCCcchhHHHHhcCCCCCcEEEcc
Q 001271 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-PL--------DYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSAL 95 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~-~l--------~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs 95 (1111)
...++.|.+..+.++.+|..+. ..+|..+.... .+ ..-.+..++|+++..++.+|. +..+++|+.|+|+
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~-~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFR-PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCC-ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 4557888888888888876652 23333322211 11 111234567777777777775 6778888888888
Q ss_pred CCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCC-CccchhhhccccccccCCCCCCCccEEE
Q 001271 96 PPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVFASRIVEIKDSPQWNRLSFVS 174 (1111)
Q Consensus 96 ~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~-L~sL~~l~~~~I~~L~~l~~L~~L~~L~ 174 (1111)
+|.....+|..+..+++|+.|+|++|.....+|..+ ++.+|..+.+.+|. +..++.. ..+|+.|+
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~-------------~~nL~~L~ 731 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI-------------STNISWLD 731 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc-------------cCCcCeee
Confidence 877666788888888888888888875444556544 56666666666653 1222111 12455555
Q ss_pred ccCCccccchhhh------------------------------cCCCCCcEEEccCCC-CCCCC-CcCCCCCCcEEECCC
Q 001271 175 CSCNRLVIMDESL------------------------------QLLPAVETLDLSRNK-FAKVD-NLRKCVNLKHLDLGF 222 (1111)
Q Consensus 175 Ls~N~LssLP~~L------------------------------~~L~nL~~LdLS~N~-Ls~L~-~L~~L~sL~~LdLS~ 222 (1111)
|++|.+..+|..+ ..+++|+.|+|++|. +..+| .+.++++|+.|+|++
T Consensus 732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 5555555444321 123578888888875 44455 688899999999998
Q ss_pred C-CCCCccccccccccceEeeccCC-ccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecC-CCCCCCc
Q 001271 223 N-NLRSIAAFSEVSCHIVKLVLRNN-ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEG-NPLCCSR 299 (1111)
Q Consensus 223 N-~Lt~L~~l~~~L~sL~~L~LS~N-~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~Lsg-NpLs~~~ 299 (1111)
| .+..+|... .+++|+.|+|++| .+..++.+ ..+|+.|+|++|.|+.+| ..+..+++|+.|+|++ |.+...+
T Consensus 812 C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP--~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 812 CINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVP--WWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred CCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCccCh--HHHhcCCCCCEEECCCCCCcCccC
Confidence 6 567676544 5689999999987 45555543 468999999999999988 5788999999999988 4555433
Q ss_pred cchhhHhhhcCCCCeeecCCCc
Q 001271 300 WYRAQVFSYFAHPAKLKVDGKE 321 (1111)
Q Consensus 300 ~~r~~if~~l~~L~~L~LdgN~ 321 (1111)
. .+..++.|+.+.+.++.
T Consensus 887 ~----~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 887 L----NISKLKHLETVDFSDCG 904 (1153)
T ss_pred c----ccccccCCCeeecCCCc
Confidence 2 23345677777777664
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.54 E-value=1.2e-15 Score=171.54 Aligned_cols=269 Identities=19% Similarity=0.164 Sum_probs=177.6
Q ss_pred EEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHH-HHhcCCCCCcEEEccCCCCCCCCCccCC
Q 001271 30 VLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLR-RILKLLTSLKVVSALPPPARDPTPLSLL 108 (1111)
Q Consensus 30 ~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp-~~L~~L~nLk~LdLs~N~Is~~iP~sLs 108 (1111)
..+=+..+|.++|..|..=. ..+.|..|+ +..|| ..|+.+++|+.|||++|+|+.+-|.+|.
T Consensus 50 ~VdCr~~GL~eVP~~LP~~t----------------veirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~ 112 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPET----------------VEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK 112 (498)
T ss_pred eEEccCCCcccCcccCCCcc----------------eEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhh
Confidence 44566677777776653211 012234443 34444 4788888888888888888888888888
Q ss_pred CCCCCCEEEeeC-CCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccccchh-h
Q 001271 109 PFCRLKVLELRG-CDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-S 186 (1111)
Q Consensus 109 ~L~nL~~LdLS~-N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~-~ 186 (1111)
++++|..|-+.+ |+|+...-..|.+|..+..+++.-|++..++.-.+ ..+++|..|.+.+|.+..++. .
T Consensus 113 GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al---------~dL~~l~lLslyDn~~q~i~~~t 183 (498)
T KOG4237|consen 113 GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDAL---------RDLPSLSLLSLYDNKIQSICKGT 183 (498)
T ss_pred hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHH---------HHhhhcchhcccchhhhhhcccc
Confidence 888887777666 88887666778888888888777777666654332 235577888888888888887 7
Q ss_pred hcCCCCCcEEEccCCCCCC---CC-----------CcCCCCCCcEEEC-------------------------CCCCCCC
Q 001271 187 LQLLPAVETLDLSRNKFAK---VD-----------NLRKCVNLKHLDL-------------------------GFNNLRS 227 (1111)
Q Consensus 187 L~~L~nL~~LdLS~N~Ls~---L~-----------~L~~L~sL~~LdL-------------------------S~N~Lt~ 227 (1111)
|..+.+++.+.+..|.+-. ++ .++...-..-..+ +.+.+..
T Consensus 184 f~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~ 263 (498)
T KOG4237|consen 184 FQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDS 263 (498)
T ss_pred ccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCC
Confidence 8888888888887776321 10 1111111110001 1111111
Q ss_pred -ccc-cccccccceEeeccCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchh
Q 001271 228 -IAA-FSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRA 303 (1111)
Q Consensus 228 -L~~-l~~~L~sL~~L~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~ 303 (1111)
.|. .+..+++|++|+|++|+|+.+ .+|..+..|+.|.|..|+|..+.. ..|.++..|+.|+|.+|.|++..+
T Consensus 264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~~--- 339 (498)
T KOG4237|consen 264 ICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS-GMFQGLSGLKTLSLYDNQITTVAP--- 339 (498)
T ss_pred cChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH-HhhhccccceeeeecCCeeEEEec---
Confidence 111 233467888888888888887 367788888888888888877765 667778888888888888876643
Q ss_pred hHhhhcCCCCeeecCCCcCChhHHH
Q 001271 304 QVFSYFAHPAKLKVDGKEISTRELW 328 (1111)
Q Consensus 304 ~if~~l~~L~~L~LdgN~It~~E~~ 328 (1111)
..|..+..+..+.|-+||+.+.-+.
T Consensus 340 ~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred ccccccceeeeeehccCcccCccch
Confidence 3355666677778888887776653
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=4.3e-15 Score=167.07 Aligned_cols=255 Identities=17% Similarity=0.179 Sum_probs=195.1
Q ss_pred CCCccccccc---cccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhh
Q 001271 57 GAPLDYLRAY---VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLE 133 (1111)
Q Consensus 57 ~~~l~~Lrl~---vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~ 133 (1111)
.||..+.+.. ..--.....+.++|..+ -+.-..|.|..|+|+...|.+|..+++|+.|||++|+|+.+.|.+|..
T Consensus 36 ~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 36 ACPAPCTCSDVEGGIVDCRGKGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG 113 (498)
T ss_pred cCCCCcccCCCCCceEEccCCCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence 4555554433 11223345567777542 236788999999999888899999999999999999999999999999
Q ss_pred hhhhhhhhhcc-CCCccchhhhccccccccCCCCCCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--Cc
Q 001271 134 LRHTLEKIICH-NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NL 209 (1111)
Q Consensus 134 L~~LleLlLs~-N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L 209 (1111)
++.+.++.+.+ |+|+.++...++ ++..|+.|.+.-|++..++. .|..+++|..|.|-.|.+..+. .+
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~---------gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf 184 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFG---------GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF 184 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhh---------hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccc
Confidence 99999998776 888888776554 45678889999999996654 8999999999999999999985 68
Q ss_pred CCCCCCcEEECCCCCCCC---cc----------cccccccc----------------------ceEe--ec-cCCccCCc
Q 001271 210 RKCVNLKHLDLGFNNLRS---IA----------AFSEVSCH----------------------IVKL--VL-RNNALTTL 251 (1111)
Q Consensus 210 ~~L~sL~~LdLS~N~Lt~---L~----------~l~~~L~s----------------------L~~L--~L-S~N~Lt~L 251 (1111)
..+.+++++.+..|.+.. ++ ........ ++.+ .+ +.+.+..+
T Consensus 185 ~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~ 264 (498)
T KOG4237|consen 185 QGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSI 264 (498)
T ss_pred cchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCc
Confidence 889999999998887321 11 01111111 1111 11 11222222
Q ss_pred -c--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChhH
Q 001271 252 -R--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (1111)
Q Consensus 252 -~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E 326 (1111)
| .|..+++|+.|+|++|+|+.+.+ .+|..+..|+.|.|..|.|. .+...+|..+..|+.+.|.+|.|+...
T Consensus 265 cP~~cf~~L~~L~~lnlsnN~i~~i~~-~aFe~~a~l~eL~L~~N~l~---~v~~~~f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 265 CPAKCFKKLPNLRKLNLSNNKITRIED-GAFEGAAELQELYLTRNKLE---FVSSGMFQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred ChHHHHhhcccceEeccCCCccchhhh-hhhcchhhhhhhhcCcchHH---HHHHHhhhccccceeeeecCCeeEEEe
Confidence 2 57889999999999999999987 89999999999999999995 556778999999999999999998764
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=2.5e-14 Score=158.84 Aligned_cols=217 Identities=26% Similarity=0.270 Sum_probs=94.3
Q ss_pred HHHHhcCCCCCcEEEccCCCCCC------CCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchh
Q 001271 79 LRRILKLLTSLKVVSALPPPARD------PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRH 152 (1111)
Q Consensus 79 Lp~~L~~L~nLk~LdLs~N~Is~------~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~ 152 (1111)
++..+...++|+.|+++++.+.. .++..+..+++|+.|+|++|.+....+..+..+..
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---------------- 106 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLR---------------- 106 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhc----------------
Confidence 44445555555555555555441 12233444555555666555555433333333321
Q ss_pred hhccccccccCCCCCCCccEEEccCCccc-----cchhhhcCC-CCCcEEEccCCCCCCC------CCcCCCCCCcEEEC
Q 001271 153 VFASRIVEIKDSPQWNRLSFVSCSCNRLV-----IMDESLQLL-PAVETLDLSRNKFAKV------DNLRKCVNLKHLDL 220 (1111)
Q Consensus 153 l~~~~I~~L~~l~~L~~L~~L~Ls~N~Ls-----sLP~~L~~L-~nL~~LdLS~N~Ls~L------~~L~~L~sL~~LdL 220 (1111)
. ++|++|++++|.++ .+...+..+ ++|+.|+|++|.++.- ..+..+++|++|+|
T Consensus 107 -------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 107 -------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred -------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 0 23455555555444 122233334 4555555555555421 12334445555555
Q ss_pred CCCCCCCc-----cccccccccceEeeccCCccCCc------ccCCCCCCCCEEEccCCCCCCCchhhhhc----CCCCC
Q 001271 221 GFNNLRSI-----AAFSEVSCHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTFSELEFLA----SLPYL 285 (1111)
Q Consensus 221 S~N~Lt~L-----~~l~~~L~sL~~L~LS~N~Lt~L------~~L~~L~sL~~LdLS~N~Is~l~~l~~L~----~L~~L 285 (1111)
++|.++.. ......+++|+.|+|++|.++.. ..+..+++|+.|++++|.+++........ ..+.|
T Consensus 173 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252 (319)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence 55554421 11111123555555555554432 12344555555555555555422111111 12455
Q ss_pred cEEEecCCCCCCCc-cchhhHhhhcCCCCeeecCCCcCChh
Q 001271 286 LNLWLEGNPLCCSR-WYRAQVFSYFAHPAKLKVDGKEISTR 325 (1111)
Q Consensus 286 ~~L~LsgNpLs~~~-~~r~~if~~l~~L~~L~LdgN~It~~ 325 (1111)
+.|++++|.++... ......+..++.++.+++++|.++..
T Consensus 253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 55555555554221 00111223334455555555555544
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.51 E-value=2.4e-14 Score=159.02 Aligned_cols=260 Identities=23% Similarity=0.177 Sum_probs=168.9
Q ss_pred ccCCcEEEecCCCcc-----chHHhhhhcccchhhccCCCccccccccccCCC-CCcchhHHHHhcCCCCCcEEEccCCC
Q 001271 25 IEGSIVLKLNPAGLH-----YVQSRLEALRELERLLAGAPLDYLRAYVSDLGD-HRALEQLRRILKLLTSLKVVSALPPP 98 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~-----~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~-n~~L~~Lp~~L~~L~nLk~LdLs~N~ 98 (1111)
+..++.|++..+.+. .++..+...++|+.+... ...+.. ...+..++..+..+++|+.|+|++|.
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~---------~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS---------LNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecc---------ccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 344889999999983 455555555444443221 112221 23356677888889999999999999
Q ss_pred CCCCCCccCCCCCC---CCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCC-CCccEEE
Q 001271 99 ARDPTPLSLLPFCR---LKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW-NRLSFVS 174 (1111)
Q Consensus 99 Is~~iP~sLs~L~n---L~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L-~~L~~L~ 174 (1111)
+.+..+..+..+.. |++|+|++|.++......+.... ..+ ++|+.|+
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l-----------------------------~~~~~~L~~L~ 143 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL-----------------------------KDLPPALEKLV 143 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH-----------------------------HhCCCCceEEE
Confidence 98766666655555 99999999999752222111100 112 4788888
Q ss_pred ccCCccc-----cchhhhcCCCCCcEEEccCCCCCC-----C-CCcCCCCCCcEEECCCCCCCCcc-----ccccccccc
Q 001271 175 CSCNRLV-----IMDESLQLLPAVETLDLSRNKFAK-----V-DNLRKCVNLKHLDLGFNNLRSIA-----AFSEVSCHI 238 (1111)
Q Consensus 175 Ls~N~Ls-----sLP~~L~~L~nL~~LdLS~N~Ls~-----L-~~L~~L~sL~~LdLS~N~Lt~L~-----~l~~~L~sL 238 (1111)
+++|.++ .++..+..++.|+.|+|++|.++. + ..+..+++|+.|+|++|.++... .....+++|
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L 223 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL 223 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence 8888877 344556677788888888888874 1 23455678888888888876432 223345778
Q ss_pred eEeeccCCccCCc--cc-----CCCCCCCCEEEccCCCCCCCch---hhhhcCCCCCcEEEecCCCCCCCcc-chhhHhh
Q 001271 239 VKLVLRNNALTTL--RG-----IENLKSLEGLDISYNIISTFSE---LEFLASLPYLLNLWLEGNPLCCSRW-YRAQVFS 307 (1111)
Q Consensus 239 ~~L~LS~N~Lt~L--~~-----L~~L~sL~~LdLS~N~Is~l~~---l~~L~~L~~L~~L~LsgNpLs~~~~-~r~~if~ 307 (1111)
++|++++|.++.. .. ....+.|+.|++++|.|++... ...+..+++|+.|++++|.+..... ....++.
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~ 303 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL 303 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence 8888888888753 11 1134788889998888874221 1345566788889999998875522 2223344
Q ss_pred hc-CCCCeeecCCCcC
Q 001271 308 YF-AHPAKLKVDGKEI 322 (1111)
Q Consensus 308 ~l-~~L~~L~LdgN~I 322 (1111)
.+ +.++.+++.+|++
T Consensus 304 ~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 304 EPGNELESLWVKDDSF 319 (319)
T ss_pred hcCCchhhcccCCCCC
Confidence 44 5677777777764
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.50 E-value=2.7e-13 Score=176.96 Aligned_cols=281 Identities=18% Similarity=0.134 Sum_probs=181.6
Q ss_pred hcCCccccCCcEEEecCCCcc-------chHHhhhhcc-cchhhcc-CCC-------ccccccccccCCCCCcchhHHHH
Q 001271 19 QQAGPLIEGSIVLKLNPAGLH-------YVQSRLEALR-ELERLLA-GAP-------LDYLRAYVSDLGDHRALEQLRRI 82 (1111)
Q Consensus 19 ~~~~slL~~lk~L~Ls~~~L~-------~Lp~~L~~L~-~Le~L~~-~~~-------l~~Lrl~vLdLs~n~~L~~Lp~~ 82 (1111)
+.+..-+.+++.|++..+.+. .+|..+..+. +|..+.. ..+ +..-.+..+++.+++ +..+|..
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~ 629 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK-LEKLWDG 629 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcc-ccccccc
Confidence 333444778888888655321 2444443321 1222211 111 111233467777765 6778888
Q ss_pred hcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccC-CCccchhhhccccccc
Q 001271 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN-STNALRHVFASRIVEI 161 (1111)
Q Consensus 83 L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N-~L~sL~~l~~~~I~~L 161 (1111)
+..+++|+.|+|++|.....+|. ++.+++|++|+|++|.....+|..+..+.+|..+.+.++ .+..++..
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-------- 700 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-------- 700 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--------
Confidence 88999999999998765556664 888999999999998776778999999999999888875 34433321
Q ss_pred cCCCCCCCccEEEccCCc-cccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCc-------ccc-c
Q 001271 162 KDSPQWNRLSFVSCSCNR-LVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSI-------AAF-S 232 (1111)
Q Consensus 162 ~~l~~L~~L~~L~Ls~N~-LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L-------~~l-~ 232 (1111)
..+++|+.|+|++|. +..+|.. .++|+.|+|++|.|..+|....+++|+.|.+.++....+ .+. .
T Consensus 701 ---i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 701 ---INLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred ---CCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhh
Confidence 246799999999884 4466543 468999999999998887555677777777776432211 111 1
Q ss_pred cccccceEeeccCCc-cCCcc-cCCCCCCCCEEEccCC-CCCCCchhhhhcCCCCCcEEEecCCCCC-CCccchhhHhhh
Q 001271 233 EVSCHIVKLVLRNNA-LTTLR-GIENLKSLEGLDISYN-IISTFSELEFLASLPYLLNLWLEGNPLC-CSRWYRAQVFSY 308 (1111)
Q Consensus 233 ~~L~sL~~L~LS~N~-Lt~L~-~L~~L~sL~~LdLS~N-~Is~l~~l~~L~~L~~L~~L~LsgNpLs-~~~~~r~~if~~ 308 (1111)
..+++|+.|+|++|. +..+| .+.++++|+.|+|++| .+..+|. . ..+++|+.|+|++|... ..+. .
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~--~-~~L~sL~~L~Ls~c~~L~~~p~-------~ 844 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT--G-INLESLESLDLSGCSRLRTFPD-------I 844 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC--C-CCccccCEEECCCCCccccccc-------c
Confidence 124677888887774 44454 5777788888888765 4666653 2 25677777777776432 1111 1
Q ss_pred cCCCCeeecCCCcCChh
Q 001271 309 FAHPAKLKVDGKEISTR 325 (1111)
Q Consensus 309 l~~L~~L~LdgN~It~~ 325 (1111)
..+++.++|.+|.+...
T Consensus 845 ~~nL~~L~Ls~n~i~~i 861 (1153)
T PLN03210 845 STNISDLNLSRTGIEEV 861 (1153)
T ss_pred ccccCEeECCCCCCccC
Confidence 24566777777776543
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=1.4e-15 Score=155.29 Aligned_cols=176 Identities=23% Similarity=0.309 Sum_probs=125.3
Q ss_pred cCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccC
Q 001271 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (1111)
Q Consensus 84 ~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~ 163 (1111)
-.+.+++.|.|++|+++ .+|+.+..+.+|+.|++++|+|.. .|..+..
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~iss------------------------------ 77 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISS------------------------------ 77 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhh------------------------------
Confidence 34566667777777776 566667777777777777777754 4444433
Q ss_pred CCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCC--CC-CcCCCCCCcEEECCCCCCCCccccccccccceE
Q 001271 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAK--VD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVK 240 (1111)
Q Consensus 164 l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~--L~-~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~ 240 (1111)
+++|+.|+++-|++..+|.+|+.+|.|+.|||++|++.. +| .|..++.|+.|+|+.|.+.-+|+..+.+.+|+.
T Consensus 78 ---l~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 78 ---LPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQI 154 (264)
T ss_pred ---chhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeE
Confidence 347888888888888888888888888888888888875 44 677777888888888888888877777788888
Q ss_pred eeccCCccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCC---CCcEEEecCCCCC
Q 001271 241 LVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLP---YLLNLWLEGNPLC 296 (1111)
Q Consensus 241 L~LS~N~Lt~L~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~---~L~~L~LsgNpLs 296 (1111)
|.+..|.+-.+| .++.+..|+.|.+.+|+++-+|+ .++.+. +-+.+.+..||+.
T Consensus 155 l~lrdndll~lpkeig~lt~lrelhiqgnrl~vlpp--el~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 155 LSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPP--ELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred EeeccCchhhCcHHHHHHHHHHHHhcccceeeecCh--hhhhhhhhhhHHHHhhhhCCCC
Confidence 888888777765 67777788888888888887774 333321 2234445555553
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=1.1e-14 Score=148.75 Aligned_cols=182 Identities=19% Similarity=0.271 Sum_probs=148.6
Q ss_pred CCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccccchhh
Q 001271 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDES 186 (1111)
Q Consensus 107 Ls~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~~ 186 (1111)
+.++.+++.|-|++|.++. +|..+..+. +|+.|++++|+|+.+|..
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~---------------------------------nlevln~~nnqie~lp~~ 74 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-VPPNIAELK---------------------------------NLEVLNLSNNQIEELPTS 74 (264)
T ss_pred ccchhhhhhhhcccCceee-cCCcHHHhh---------------------------------hhhhhhcccchhhhcChh
Confidence 4455667777777777765 444555543 788999999999999999
Q ss_pred hcCCCCCcEEEccCCCCCCCC-CcCCCCCCcEEECCCCCCCC--ccccccccccceEeeccCCccCCcc-cCCCCCCCCE
Q 001271 187 LQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRS--IAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEG 262 (1111)
Q Consensus 187 L~~L~nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS~N~Lt~--L~~l~~~L~sL~~L~LS~N~Lt~L~-~L~~L~sL~~ 262 (1111)
+..++.|+.|+++-|++..+| +|+.++.|+.|||++|++.. +|..++.+..|+.|+|+.|.+.-+| .++.+++|+.
T Consensus 75 issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 75 ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQI 154 (264)
T ss_pred hhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeE
Confidence 999999999999999999887 89999999999999999974 7777777899999999999999984 7999999999
Q ss_pred EEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChh
Q 001271 263 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (1111)
Q Consensus 263 LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~ 325 (1111)
|.++.|.+-++| ..++.+..|+.|.+.||.++-.+.-. ..+.....-+.+.+..|++...
T Consensus 155 l~lrdndll~lp--keig~lt~lrelhiqgnrl~vlppel-~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 155 LSLRDNDLLSLP--KEIGDLTRLRELHIQGNRLTVLPPEL-ANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred EeeccCchhhCc--HHHHHHHHHHHHhcccceeeecChhh-hhhhhhhhHHHHhhhhCCCCCh
Confidence 999999999999 67899999999999999998653211 1122333445677888887543
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.7e-14 Score=162.48 Aligned_cols=251 Identities=18% Similarity=0.123 Sum_probs=192.1
Q ss_pred hHHHHhcCCCCCcEEEccCCCCCCCCC-ccCCCCCCCCEEEeeCCCCCcc--chhhHhhhhhhhhhhhccCCCccchhhh
Q 001271 78 QLRRILKLLTSLKVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLSTS--AAKGLLELRHTLEKIICHNSTNALRHVF 154 (1111)
Q Consensus 78 ~Lp~~L~~L~nLk~LdLs~N~Is~~iP-~sLs~L~nL~~LdLS~N~Ls~~--~P~~L~~L~~LleLlLs~N~L~sL~~l~ 154 (1111)
++..--.++.+|+.+.|.+..+....- .....+++++.|||+.|-+... +..-...|++|..|.++.|.+.....-.
T Consensus 112 ki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 112 KIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred HHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc
Confidence 444445678889999998887753221 3456789999999999988753 3355667888888889888754332211
Q ss_pred ccccccccCCCCCCCccEEEccCCccc--cchhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcc-
Q 001271 155 ASRIVEIKDSPQWNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIA- 229 (1111)
Q Consensus 155 ~~~I~~L~~l~~L~~L~~L~Ls~N~Ls--sLP~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~- 229 (1111)
.. ..++.|+.|.|+.|+|+ .+...+..+|+|+.|+|..|....+. ....+..|+.|+|++|++-..+
T Consensus 192 ~~--------~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~ 263 (505)
T KOG3207|consen 192 TT--------LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ 263 (505)
T ss_pred ch--------hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc
Confidence 10 13568999999999999 55556778999999999999643332 4455788999999999998877
Q ss_pred -ccccccccceEeeccCCccCCc--cc------CCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001271 230 -AFSEVSCHIVKLVLRNNALTTL--RG------IENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (1111)
Q Consensus 230 -~l~~~L~sL~~L~LS~N~Lt~L--~~------L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~ 300 (1111)
.....++.|..|+++.+.|..+ +. ...+++|+.|++..|+|..|+.+..+..+++|+.|.+.+|++.....
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence 4455689999999999999987 22 35689999999999999999998889999999999999999987644
Q ss_pred chhhHhhhcCCCCeeecCCCcCChhHHHHHHHHHHhh
Q 001271 301 YRAQVFSYFAHPAKLKVDGKEISTRELWERQLIIARR 337 (1111)
Q Consensus 301 ~r~~if~~l~~L~~L~LdgN~It~~E~~~~~~l~~~~ 337 (1111)
....+-..+..+...|++..+...+|..++..+...
T Consensus 344 -~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~~~ 379 (505)
T KOG3207|consen 344 -TAKLLVIARISQLVKLNDVDISPNERRDAELYYLSK 379 (505)
T ss_pred -ceeEEeeeehhhhhhhcccccChHHhhhhhhhHHhh
Confidence 222333445577788999999999998888877665
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.42 E-value=2.3e-13 Score=158.71 Aligned_cols=174 Identities=25% Similarity=0.287 Sum_probs=144.9
Q ss_pred CCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccccchhhhcC
Q 001271 110 FCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQL 189 (1111)
Q Consensus 110 L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~~L~~ 189 (1111)
+.--...||+.|++.. +|..+..+..|..+++.+|.+..++..+ ..+..|++|+|+.|+++.+|..++.
T Consensus 74 ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r~ip~~i----------~~L~~lt~l~ls~NqlS~lp~~lC~ 142 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIRTIPEAI----------CNLEALTFLDLSSNQLSHLPDGLCD 142 (722)
T ss_pred ccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccceecchhh----------hhhhHHHHhhhccchhhcCChhhhc
Confidence 4455567888888854 6777777777777778888766665433 2356889999999999999999988
Q ss_pred CCCCcEEEccCCCCCCCC-CcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcc-cCCCCCCCCEEEccC
Q 001271 190 LPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISY 267 (1111)
Q Consensus 190 L~nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~-~L~~L~sL~~LdLS~ 267 (1111)
|| |+.|.+++|+++.+| .++.+..|..||.+.|.|..+++....+.+|+.|++..|++..+| .+..|+ |..||+++
T Consensus 143 lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfSc 220 (722)
T KOG0532|consen 143 LP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSC 220 (722)
T ss_pred Cc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeeccc
Confidence 87 899999999999876 788889999999999999999988777899999999999998885 566554 99999999
Q ss_pred CCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001271 268 NIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (1111)
Q Consensus 268 N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~ 298 (1111)
|+|..+| ..|..|..|++|-|.+||++..
T Consensus 221 Nkis~iP--v~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 221 NKISYLP--VDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred Cceeecc--hhhhhhhhheeeeeccCCCCCC
Confidence 9999999 6789999999999999999865
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=3.8e-11 Score=125.53 Aligned_cols=136 Identities=26% Similarity=0.363 Sum_probs=53.9
Q ss_pred EccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcccCCCCCCCCEEEccCCCCCCCchh
Q 001271 197 DLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSEL 276 (1111)
Q Consensus 197 dLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l 276 (1111)
.|..+.|..++.+.++..++.|+|.+|.|+.+..+...+.+|+.|+|++|.|+.++++..++.|+.|+|++|+|+.+.+
T Consensus 3 ~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~- 81 (175)
T PF14580_consen 3 RLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE- 81 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH-
T ss_pred cccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc-
Confidence 4567778888888888899999999999999988766678999999999999999999999999999999999999863
Q ss_pred hhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChhHHHHHHHHHH
Q 001271 277 EFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLIIA 335 (1111)
Q Consensus 277 ~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E~~~~~~l~~ 335 (1111)
.....+|+|+.|+|++|.|.....+ ..+..++.|+.+.|.|||+.....++..+++.
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~ 138 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYK 138 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH
T ss_pred chHHhCCcCCEEECcCCcCCChHHh--HHHHcCCCcceeeccCCcccchhhHHHHHHHH
Confidence 2224689999999999999876554 34668899999999999998776665555543
No 29
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=3e-11 Score=132.59 Aligned_cols=259 Identities=20% Similarity=0.184 Sum_probs=183.0
Q ss_pred chhHHHHhcCCCCCcEEEccCCCCCC--CCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhh
Q 001271 76 LEQLRRILKLLTSLKVVSALPPPARD--PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHV 153 (1111)
Q Consensus 76 L~~Lp~~L~~L~nLk~LdLs~N~Is~--~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l 153 (1111)
.+..-.+=..++.++.|||.+|.|++ .+..-+.+||.|++|+|+.|.+.. .+..++
T Consensus 60 ~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s----~I~~lp------------------ 117 (418)
T KOG2982|consen 60 EGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS----DIKSLP------------------ 117 (418)
T ss_pred chhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC----ccccCc------------------
Confidence 44444444557888999999999875 344456688999999999998874 222222
Q ss_pred hccccccccCCCCCCCccEEEccCCccc--cchhhhcCCCCCcEEEccCCCCCCC--C--CcCCC-CCCcEEECCCCCCC
Q 001271 154 FASRIVEIKDSPQWNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKV--D--NLRKC-VNLKHLDLGFNNLR 226 (1111)
Q Consensus 154 ~~~~I~~L~~l~~L~~L~~L~Ls~N~Ls--sLP~~L~~L~nL~~LdLS~N~Ls~L--~--~L~~L-~sL~~LdLS~N~Lt 226 (1111)
....+|+.|-|.+..|. .....+..+|.++.|.+|.|.+..+ + ..... +.+++|.+..|...
T Consensus 118 -----------~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 118 -----------LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ 186 (418)
T ss_pred -----------ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH
Confidence 02357888888888776 5556778889999999999976653 1 22222 35667777666443
Q ss_pred C---ccccccccccceEeeccCCccCCc---ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC--
Q 001271 227 S---IAAFSEVSCHIVKLVLRNNALTTL---RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS-- 298 (1111)
Q Consensus 227 ~---L~~l~~~L~sL~~L~LS~N~Lt~L---~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~-- 298 (1111)
. +-.+...+|++..+.+..|.|++. .+...+|.+-.|+|+.|+|.+|..++.+..++.|..|.+.+||+...
T Consensus 187 ~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 187 LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 2 223444578999999999999887 36778899999999999999999999999999999999999999865
Q ss_pred ccchhhHhhhcCCCCeeecCCCcCChhHHHHHHHHHHhhccCCCCCCcCCCCCCCCCCCCCccchhccchhhhhccccc
Q 001271 299 RWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLIIARRQKRPAGFGFYSPAKGNADGDGNANRKRKKACRLASIESEE 377 (1111)
Q Consensus 299 ~~~r~~if~~l~~L~~L~LdgN~It~~E~~~~~~l~~~~~~~p~~~g~~~p~k~~~~~eds~~rk~~k~~Rla~I~e~e 377 (1111)
+..+..+ -..+..++..|+|..|+..++...+..|.+. |+..++.+...........+...+..+...+
T Consensus 267 ~~err~l-lIaRL~~v~vLNGskIss~er~dSEr~fVRy---------ym~qke~p~ky~el~~~Hg~l~~Lv~~~l~p 335 (418)
T KOG2982|consen 267 GGERRFL-LIARLTKVQVLNGSKISSRERKDSERRFVRY---------YMSQKELPDKYGELELLHGRLYELVKLHLIP 335 (418)
T ss_pred CCcceEE-EEeeccceEEecCcccchhhhhhhHHHHHHH---------HhhhhhcchhhhhHHHHccchhhhhhcccCc
Confidence 2222222 2334456677889999999998888887773 4445555555555555555555555555444
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=2e-10 Score=133.01 Aligned_cols=192 Identities=28% Similarity=0.277 Sum_probs=115.1
Q ss_pred EEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhh-hhhhhhhccCCCccchhhhccccccccCCCCCCC
Q 001271 91 VVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELR-HTLEKIICHNSTNALRHVFASRIVEIKDSPQWNR 169 (1111)
Q Consensus 91 ~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~-~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~ 169 (1111)
.|.+..|.+... ...+..++.++.|++.+|.++. ++.....+. ++..+.+.+|.+..++. .+..+++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~~----------~~~~l~~ 164 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLPS----------PLRNLPN 164 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhhhhh----------hhhcccc
Confidence 355555554311 2233444556666666666654 333333332 45555555555444431 1223556
Q ss_pred ccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCc-CCCCCCcEEECCCCCCCCccccccccccceEeeccCCcc
Q 001271 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNL-RKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNAL 248 (1111)
Q Consensus 170 L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L-~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~L 248 (1111)
|+.|++++|++..+|.....+++|+.|++++|++..++.. ..+..|+.|.+++|.+..++.....+..+..|.+.+|++
T Consensus 165 L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 165 LKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred ccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee
Confidence 7777777777777766655677777777777777777644 344557777777775444444444456667777777777
Q ss_pred CCc-ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCC
Q 001271 249 TTL-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCC 297 (1111)
Q Consensus 249 t~L-~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~ 297 (1111)
..+ ..+..+++|+.|++++|.++.++. +..+.+|+.|++++|.+..
T Consensus 245 ~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 245 EDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred eeccchhccccccceecccccccccccc---ccccCccCEEeccCccccc
Confidence 663 456666777777777777777663 6666777777777777653
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=6.2e-12 Score=146.96 Aligned_cols=194 Identities=18% Similarity=0.193 Sum_probs=141.7
Q ss_pred CCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCC
Q 001271 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSP 165 (1111)
Q Consensus 86 L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~ 165 (1111)
+.--...+|+.|++. .+|..+..|..|+.|.|+.|.+.. +|..+.++..|..++++.|++..++..+..
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~--------- 142 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLSHLPDGLCD--------- 142 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhhcCChhhhc---------
Confidence 333445566666665 556666666666666666666643 556666666666666666665555543211
Q ss_pred CCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC-CcCCCCCCcEEECCCCCCCCccccccccccceEeecc
Q 001271 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLR 244 (1111)
Q Consensus 166 ~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS 244 (1111)
--|+.|.+++|+++.+|+.++.++.|..||.+.|.|..++ .++.+.+|+.|++..|++..++..... -.|..|+++
T Consensus 143 --lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfS 219 (722)
T KOG0532|consen 143 --LPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFS 219 (722)
T ss_pred --CcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-Cceeeeecc
Confidence 2588999999999999999998999999999999999875 789999999999999999998876554 358999999
Q ss_pred CCccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhh-cCCCCCcEEEecCC
Q 001271 245 NNALTTLR-GIENLKSLEGLDISYNIISTFSELEFL-ASLPYLLNLWLEGN 293 (1111)
Q Consensus 245 ~N~Lt~L~-~L~~L~sL~~LdLS~N~Is~l~~l~~L-~~L~~L~~L~LsgN 293 (1111)
.|+|..+| .|.++..|++|-|.+|.+.+-|.--.. +...-.++|+..-+
T Consensus 220 cNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 220 CNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 99999997 799999999999999999985531111 22223455555544
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=3.2e-10 Score=131.26 Aligned_cols=182 Identities=24% Similarity=0.269 Sum_probs=156.0
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCC-CCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhcccccc
Q 001271 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFC-RLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE 160 (1111)
Q Consensus 82 ~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~-nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~ 160 (1111)
.+..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+.. +|..+..++.|..+.+.+|++..++....
T Consensus 111 ~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~----- 183 (394)
T COG4886 111 ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSDLPKLLS----- 183 (394)
T ss_pred hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhhhhhhhh-----
Confidence 3456689999999999998 5666677775 99999999999976 55678999999999999998877765431
Q ss_pred ccCCCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCC-CCCCCCcCCCCCCcEEECCCCCCCCccccccccccce
Q 001271 161 IKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNK-FAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIV 239 (1111)
Q Consensus 161 L~~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~-Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~ 239 (1111)
..+.|+.|++++|++..+|.....+..|+.|.+++|. +..+..+..+.++..|.+.+|++..++.....++.|+
T Consensus 184 -----~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~ 258 (394)
T COG4886 184 -----NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLE 258 (394)
T ss_pred -----hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccc
Confidence 3568999999999999999887777889999999995 5556678899999999999999988766666678899
Q ss_pred EeeccCCccCCcccCCCCCCCCEEEccCCCCCCCch
Q 001271 240 KLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSE 275 (1111)
Q Consensus 240 ~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~ 275 (1111)
.|++++|.++.++.+..+.+|+.|++++|.+...++
T Consensus 259 ~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 259 TLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred eeccccccccccccccccCccCEEeccCccccccch
Confidence 999999999999889999999999999999988764
No 33
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=1.5e-10 Score=135.87 Aligned_cols=229 Identities=27% Similarity=0.319 Sum_probs=164.7
Q ss_pred HHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhcccccc
Q 001271 81 RILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE 160 (1111)
Q Consensus 81 ~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~ 160 (1111)
..+..+.+|..|++.+|.|... ...+..+++|++|+|++|.|+.. .++..+..|..|.+.+|.|..+..
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~~-------- 157 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDISG-------- 157 (414)
T ss_pred cccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhccC--------
Confidence 3466788888888888888743 33367788888888888888763 356666667778888886555543
Q ss_pred ccCCCCCCCccEEEccCCccccchhh-hcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccc-cccc
Q 001271 161 IKDSPQWNRLSFVSCSCNRLVIMDES-LQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEV-SCHI 238 (1111)
Q Consensus 161 L~~l~~L~~L~~L~Ls~N~LssLP~~-L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~-L~sL 238 (1111)
+..+..|+.+++++|.+..+... +..+.+|+.+++.+|.+..+..+..+..+..+++..|.++.+.+.... ..+|
T Consensus 158 ---~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L 234 (414)
T KOG0531|consen 158 ---LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHL 234 (414)
T ss_pred ---CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHH
Confidence 33466888888888888877543 577888888888888888887777777777778888888877665433 1138
Q ss_pred eEeeccCCccCCc-ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC-ccchhhHhhhcCCCCeee
Q 001271 239 VKLVLRNNALTTL-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS-RWYRAQVFSYFAHPAKLK 316 (1111)
Q Consensus 239 ~~L~LS~N~Lt~L-~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~-~~~r~~if~~l~~L~~L~ 316 (1111)
+.+++++|.+..+ ..+..+..+..|++..|++..+.. +...+.+..+.+..|++... ...........+.+..+.
T Consensus 235 ~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (414)
T KOG0531|consen 235 RELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG---LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLT 311 (414)
T ss_pred HHHhcccCccccccccccccccccccchhhcccccccc---ccccchHHHhccCcchhcchhhhhccccccccccccccc
Confidence 8888899988888 678888888888998888887653 45666777788888887633 111111134456677788
Q ss_pred cCCCcCChhH
Q 001271 317 VDGKEISTRE 326 (1111)
Q Consensus 317 LdgN~It~~E 326 (1111)
+.+|++....
T Consensus 312 ~~~~~~~~~~ 321 (414)
T KOG0531|consen 312 LELNPIRKIS 321 (414)
T ss_pred cccCcccccc
Confidence 8888876544
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.89 E-value=5.9e-10 Score=124.99 Aligned_cols=202 Identities=23% Similarity=0.220 Sum_probs=110.0
Q ss_pred ccCCcEEEecCCCcc-----chHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCC
Q 001271 25 IEGSIVLKLNPAGLH-----YVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPA 99 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~-----~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~I 99 (1111)
.+.+..++|++|.+. .+...|...++|+..... +.+... +...--..+..+.+.+..+++|++|+||.|.+
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~s---d~ftGR-~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLS---DMFTGR-LKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehH---hhhcCC-cHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 445677888888776 444555554444332110 000000 00000011333445566777888888888887
Q ss_pred CCCCCccC----CCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEc
Q 001271 100 RDPTPLSL----LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSC 175 (1111)
Q Consensus 100 s~~iP~sL----s~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~L 175 (1111)
....+..| .....|++|.|.+|.+....-..++. .|.++. .| ...+.-+.|+++.+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~----------------kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN----------------KKAASKPKLRVFIC 164 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH----------------hccCCCcceEEEEe
Confidence 65544433 34577888888888775322222221 111111 11 01123357888888
Q ss_pred cCCccccc-----hhhhcCCCCCcEEEccCCCCCC--C----CCcCCCCCCcEEECCCCCCCCccc-----cccccccce
Q 001271 176 SCNRLVIM-----DESLQLLPAVETLDLSRNKFAK--V----DNLRKCVNLKHLDLGFNNLRSIAA-----FSEVSCHIV 239 (1111)
Q Consensus 176 s~N~LssL-----P~~L~~L~nL~~LdLS~N~Ls~--L----~~L~~L~sL~~LdLS~N~Lt~L~~-----l~~~L~sL~ 239 (1111)
.+|++..- ...|...+.|+.+.++.|.|.. + ..+..+++|+.|||..|-++.-.. ....+++|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 88888733 3456777888888888887764 1 256677777777777777664322 222344555
Q ss_pred EeeccCCccCC
Q 001271 240 KLVLRNNALTT 250 (1111)
Q Consensus 240 ~L~LS~N~Lt~ 250 (1111)
.|++++|.+..
T Consensus 245 El~l~dcll~~ 255 (382)
T KOG1909|consen 245 ELNLGDCLLEN 255 (382)
T ss_pred eeccccccccc
Confidence 55555555544
No 35
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=3.5e-10 Score=132.68 Aligned_cols=197 Identities=27% Similarity=0.271 Sum_probs=113.6
Q ss_pred cCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccC
Q 001271 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (1111)
Q Consensus 84 ~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~ 163 (1111)
..+..++.+++..|.|.. +-..+..+++|+.|+|.+|.|.... ..+..+.+|..+++++|.|..+..
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~----------- 135 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG----------- 135 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc-----------
Confidence 356677777788888874 3345778899999999999997632 225555555566666665443332
Q ss_pred CCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCC--cCCCCCCcEEECCCCCCCCccccccccccceEe
Q 001271 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDN--LRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKL 241 (1111)
Q Consensus 164 l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~--L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L 241 (1111)
+..++.|+.|++.+|.|..+ ..+..+++|+.+++++|.+..++. +..+.+|+.+++.+|.+..+...... ..+..+
T Consensus 136 l~~l~~L~~L~l~~N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~-~~l~~~ 213 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNLISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLL-KKLVLL 213 (414)
T ss_pred hhhccchhhheeccCcchhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHH-HHHHHh
Confidence 22334456666666666555 334445556666666666665554 35555666666666655554443221 334444
Q ss_pred eccCCccCCcccCCCCCC--CCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCC
Q 001271 242 VLRNNALTTLRGIENLKS--LEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCC 297 (1111)
Q Consensus 242 ~LS~N~Lt~L~~L~~L~s--L~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~ 297 (1111)
++..|.++.+.++..+.. |+.+++++|++...+ ..+..+..+..|++..|.+..
T Consensus 214 ~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 214 SLLDNKISKLEGLNELVMLHLRELYLSGNRISRSP--EGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred hcccccceeccCcccchhHHHHHHhcccCcccccc--ccccccccccccchhhccccc
Confidence 555666655554444444 566666666665542 234455555666666665543
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=6.5e-10 Score=127.39 Aligned_cols=213 Identities=19% Similarity=0.157 Sum_probs=153.4
Q ss_pred cCCCCCCCCEEEeeCCCCCccch-hhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccccch
Q 001271 106 SLLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMD 184 (1111)
Q Consensus 106 sLs~L~nL~~LdLS~N~Ls~~~P-~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP 184 (1111)
.=+++..|+..-|.++.+..... .....+++...++++.|-+..+..+ +.-...+++|+.|+|+.|++...-
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v-------~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPV-------LKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHH-------HHHHHhcccchhcccccccccCCc
Confidence 34568899999999998864221 3667788888888888843333221 122346789999999999887332
Q ss_pred h--hhcCCCCCcEEEccCCCCCCCC---CcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccCCccCCc---ccCC
Q 001271 185 E--SLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL---RGIE 255 (1111)
Q Consensus 185 ~--~L~~L~nL~~LdLS~N~Ls~L~---~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~N~Lt~L---~~L~ 255 (1111)
. .-..++.|+.|.|+.+.|+.-+ .+..+|+|+.|+|..|....+.. ....+..|+.|+|++|.+... +..+
T Consensus 189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc
Confidence 2 1235788999999999998622 45667999999999996333222 233467899999999998876 3678
Q ss_pred CCCCCCEEEccCCCCCCCchhhh-----hcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChhHH
Q 001271 256 NLKSLEGLDISYNIISTFSELEF-----LASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (1111)
Q Consensus 256 ~L~sL~~LdLS~N~Is~l~~l~~-----L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E~ 327 (1111)
.++.|+.|+++.+.|.++...+. ...+++|++|++..|++...+.+. -+..+.+++.+.+++|+++.++-
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~--~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN--HLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccc--hhhccchhhhhhccccccccccc
Confidence 89999999999999987654332 456899999999999996543322 23456777888888999887654
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.80 E-value=1.6e-09 Score=121.53 Aligned_cols=228 Identities=20% Similarity=0.230 Sum_probs=162.6
Q ss_pred cccCCCCCcch----hHHHHhcCCCCCcEEEccCC---CCCCCCCcc-------CCCCCCCCEEEeeCCCCCccchhhHh
Q 001271 67 VSDLGDHRALE----QLRRILKLLTSLKVVSALPP---PARDPTPLS-------LLPFCRLKVLELRGCDLSTSAAKGLL 132 (1111)
Q Consensus 67 vLdLs~n~~L~----~Lp~~L~~L~nLk~LdLs~N---~Is~~iP~s-------Ls~L~nL~~LdLS~N~Ls~~~P~~L~ 132 (1111)
.++|++|..-. .+...+.+.++|+..++++- ++...+|.. +...++|++||||.|.+....+..|.
T Consensus 34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~ 113 (382)
T KOG1909|consen 34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE 113 (382)
T ss_pred EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence 36678776533 45667888999999998762 233344443 34457999999999999755555555
Q ss_pred hhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccccch--------------hhhcCCCCCcEEEc
Q 001271 133 ELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMD--------------ESLQLLPAVETLDL 198 (1111)
Q Consensus 133 ~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP--------------~~L~~L~nL~~LdL 198 (1111)
.+-+ .+..|++|.|.+|.|.... .....-+.|+++..
T Consensus 114 ~ll~-----------------------------s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 114 ELLS-----------------------------SCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHH-----------------------------hccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 4421 1346777777777776221 12345678999999
Q ss_pred cCCCCCCCC------CcCCCCCCcEEECCCCCCCC--cc---ccccccccceEeeccCCccCCc------ccCCCCCCCC
Q 001271 199 SRNKFAKVD------NLRKCVNLKHLDLGFNNLRS--IA---AFSEVSCHIVKLVLRNNALTTL------RGIENLKSLE 261 (1111)
Q Consensus 199 S~N~Ls~L~------~L~~L~sL~~LdLS~N~Lt~--L~---~l~~~L~sL~~L~LS~N~Lt~L------~~L~~L~sL~ 261 (1111)
.+|++..-+ .+...+.|+.+.+..|.|.. +. ..+..+++|+.|+|..|-++.- ..+..+++|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 999998632 57778999999999998863 21 2344589999999999998774 3678889999
Q ss_pred EEEccCCCCCCCchhhh----hcCCCCCcEEEecCCCCCCCcc-chhhHhhhcCCCCeeecCCCcCC
Q 001271 262 GLDISYNIISTFSELEF----LASLPYLLNLWLEGNPLCCSRW-YRAQVFSYFAHPAKLKVDGKEIS 323 (1111)
Q Consensus 262 ~LdLS~N~Is~l~~l~~----L~~L~~L~~L~LsgNpLs~~~~-~r~~if~~l~~L~~L~LdgN~It 323 (1111)
.|+++++.+.+-..... -...|+|+.|.|.+|.|+.... .....+...+.|..|.|++|++.
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 99999999987544321 2357899999999999986522 11222345677889999999995
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=8.8e-10 Score=121.08 Aligned_cols=144 Identities=22% Similarity=0.250 Sum_probs=115.2
Q ss_pred CCCCcEEEccCCCCCCCC-CcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcc-cCCCCCCCCEEEccC
Q 001271 190 LPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISY 267 (1111)
Q Consensus 190 L~nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~-~L~~L~sL~~LdLS~ 267 (1111)
...|+.||||+|.|+.++ ...-+|.++.|++++|.|..+..+. .+++|+.|+|++|.++.+. +-..+-+++.|.|+.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa-~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLA-ELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhh-hcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 456999999999999986 5666799999999999999988844 4699999999999999985 445788999999999
Q ss_pred CCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChhHHHHHHHH--HHhhcc
Q 001271 268 NIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLI--IARRQK 339 (1111)
Q Consensus 268 N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E~~~~~~l--~~~~~~ 339 (1111)
|.|.++. .+..+-+|..|++++|+|......+ .+..++.|..+.|-+||+....-++.+++ |..+..
T Consensus 362 N~iE~LS---GL~KLYSLvnLDl~~N~Ie~ldeV~--~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaS 430 (490)
T KOG1259|consen 362 NKIETLS---GLRKLYSLVNLDLSSNQIEELDEVN--HIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGERAS 430 (490)
T ss_pred hhHhhhh---hhHhhhhheeccccccchhhHHHhc--ccccccHHHHHhhcCCCccccchHHHHHHHHHhhhhh
Confidence 9999876 4677888999999999997654433 35678889999999999976544433333 555433
No 39
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.61 E-value=4.6e-08 Score=103.38 Aligned_cols=120 Identities=28% Similarity=0.348 Sum_probs=86.8
Q ss_pred CCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcccCCCCCCCCEEEccCCCCC
Q 001271 192 AVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIIS 271 (1111)
Q Consensus 192 nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is 271 (1111)
+...+||++|.|..++.|..++.|.+|.|++|+|+.+.+... ..+++|..|.|.+|.|.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---------------------~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---------------------TFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchh---------------------hhccccceEEecCcchh
Confidence 345555555555555555555555555555555555544221 23466788888888888
Q ss_pred CCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChhHHHHHHHHH
Q 001271 272 TFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLII 334 (1111)
Q Consensus 272 ~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E~~~~~~l~ 334 (1111)
.+.++..+..+|+|++|.+-+||++....||..++..++. +-.||-..|+..||..++.++
T Consensus 102 ~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~--l~~LDF~kVt~~ER~~A~~~f 162 (233)
T KOG1644|consen 102 ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS--LRTLDFQKVTRKEREEAEVFF 162 (233)
T ss_pred hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCc--ceEeehhhhhHHHHHHHHHHh
Confidence 8777788899999999999999999999999988766644 455667889999999999988
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=1.5e-08 Score=121.52 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=65.0
Q ss_pred ecCcEEEEEeccHHHHHHHh------------------h-----heeeecccccCCc-----cccchhhhH-------HH
Q 001271 899 EMGATYLLMTRSIEKSRQLF------------------C-----TLQIFYLVSANDK-----CSLRSLEQV-------QV 943 (1111)
Q Consensus 899 ~~~~~~~~~t~~~~~~~~~~------------------~-----~~~~~~~~~~~~~-----~~~~s~e~~-------q~ 943 (1111)
-....|+|.+|+++|+++++ . .++..|......+ ||..+.|+| +|
T Consensus 936 ~hrl~~~f~~~~fkE~~e~f~~ra~lveG~~~~~~c~l~~~~~~flp~dDaa~sp~~~~~~a~s~~s~edi~p~~~~~~v 1015 (1096)
T KOG1859|consen 936 DHRLKLYFYQRKFKEDGELFKWRAKLVEGLVVMSNCKLYLMEAFFLPHDDAAKSPYQVVSVAVSRLSAEDILPWKLWGGV 1015 (1096)
T ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHhcCchhhhhhhhhhhHhhcccccccccCcccccchhhhhhhhhhcCCcCCCCce
Confidence 34456899999999999994 3 5778888888888 999999999 99
Q ss_pred HHHHhhhcCCcc-eeeeeeeeeeEEecCCC
Q 001271 944 ELFEKQICGGLK-VGIFQYSMVLFWCSEDK 972 (1111)
Q Consensus 944 ~l~~~~~~~~~~-~~~~~y~~~~~~~~~~~ 972 (1111)
.|||+++|++++ +.+|||.-+.|++....
T Consensus 1016 ~l~e~~~ls~lS~l~~~q~~pl~~q~~~~~ 1045 (1096)
T KOG1859|consen 1016 VLLEHDMLSTLSLLNYLQQIPLPFQSKLNH 1045 (1096)
T ss_pred EEEeccccchHHHHHHHhhCCchhhhhhcc
Confidence 999999999999 99999999999887665
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=7.4e-07 Score=110.28 Aligned_cols=166 Identities=17% Similarity=0.126 Sum_probs=112.0
Q ss_pred ccccCCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCC---CCcchhHHH--HhcCCCCCcEEEccCC
Q 001271 23 PLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGD---HRALEQLRR--ILKLLTSLKVVSALPP 97 (1111)
Q Consensus 23 slL~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~---n~~L~~Lp~--~L~~L~nLk~LdLs~N 97 (1111)
.++.+++.+.+.+......+.....|..+..-...... .... -+.+. +...+.... .......++.|+|++|
T Consensus 352 pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~--~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n 428 (623)
T PLN03150 352 AIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLR--FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ 428 (623)
T ss_pred ceeeeeeeeeccccccccCchHHHHHHHHHHhcCCccc--CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCC
Confidence 56777778888777766666666555544432111000 0000 00000 011110000 0011224789999999
Q ss_pred CCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccC
Q 001271 98 PARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSC 177 (1111)
Q Consensus 98 ~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~ 177 (1111)
.+.+.+|..|..+++|+.|+|++|.|.+.+|..+..+ ++|+.|+|++
T Consensus 429 ~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l---------------------------------~~L~~LdLs~ 475 (623)
T PLN03150 429 GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI---------------------------------TSLEVLDLSY 475 (623)
T ss_pred CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCC---------------------------------CCCCEEECCC
Confidence 9999999999999999999999999998888766554 3788999999
Q ss_pred Cccc-cchhhhcCCCCCcEEEccCCCCCC-CC-CcCC-CCCCcEEECCCCC
Q 001271 178 NRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRK-CVNLKHLDLGFNN 224 (1111)
Q Consensus 178 N~Ls-sLP~~L~~L~nL~~LdLS~N~Ls~-L~-~L~~-L~sL~~LdLS~N~ 224 (1111)
|+|+ .+|..++.+++|+.|+|++|.+.+ +| .+.. +.++..+++.+|.
T Consensus 476 N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9998 788899999999999999999986 44 4443 3467788888885
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.31 E-value=9.5e-07 Score=109.35 Aligned_cols=104 Identities=25% Similarity=0.263 Sum_probs=85.8
Q ss_pred CCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccc-cchhhhcCC
Q 001271 112 RLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLL 190 (1111)
Q Consensus 112 nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Ls-sLP~~L~~L 190 (1111)
.++.|+|++|.+.+.+|..+..+ ++|+.|+|++|.|. .+|..+..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L---------------------------------~~L~~L~Ls~N~l~g~iP~~~~~l 465 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKL---------------------------------RHLQSINLSGNSIRGNIPPSLGSI 465 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCC---------------------------------CCCCEEECCCCcccCcCChHHhCC
Confidence 48899999999998888766544 48899999999998 899999999
Q ss_pred CCCcEEEccCCCCCC-CC-CcCCCCCCcEEECCCCCCCC-cccccc-ccccceEeeccCCcc
Q 001271 191 PAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLGFNNLRS-IAAFSE-VSCHIVKLVLRNNAL 248 (1111)
Q Consensus 191 ~nL~~LdLS~N~Ls~-L~-~L~~L~sL~~LdLS~N~Lt~-L~~l~~-~L~sL~~L~LS~N~L 248 (1111)
++|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+++ +|.... .+.++..+++.+|..
T Consensus 466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 999999999999986 44 68999999999999999985 443322 234667888888853
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=1.3e-06 Score=75.33 Aligned_cols=58 Identities=38% Similarity=0.492 Sum_probs=46.3
Q ss_pred CCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCC
Q 001271 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNL 225 (1111)
Q Consensus 168 ~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~L 225 (1111)
++|++|++++|+|+.+|. .|..+++|++|+|++|.|+.++ .|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 367888888888888875 6778888888888888888764 678888888888888865
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.14 E-value=1.4e-06 Score=75.14 Aligned_cols=59 Identities=36% Similarity=0.459 Sum_probs=41.2
Q ss_pred ccceEeeccCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCC
Q 001271 236 CHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295 (1111)
Q Consensus 236 ~sL~~L~LS~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpL 295 (1111)
|+|++|+|++|+|+.++ .|..+++|++|+|++|.|+.+++ ..|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 35666777777766663 56677777777777777777665 5677777777777777764
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.08 E-value=1.7e-06 Score=94.97 Aligned_cols=201 Identities=19% Similarity=0.155 Sum_probs=122.1
Q ss_pred cccCCcEEEecCCCcc-----chHHhhhhcccchhhccCCCcccccccccc-CCCCCcchhHHHHhcCCCCCcEEEccCC
Q 001271 24 LIEGSIVLKLNPAGLH-----YVQSRLEALRELERLLAGAPLDYLRAYVSD-LGDHRALEQLRRILKLLTSLKVVSALPP 97 (1111)
Q Consensus 24 lL~~lk~L~Ls~~~L~-----~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLd-Ls~n~~L~~Lp~~L~~L~nLk~LdLs~N 97 (1111)
+++.+..++|+.|.+. .+...+...++|...... +.+.....| + ...+..+.+.+.+||+|+.++|+.|
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfs---d~ftgr~kde~--~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFS---DAFTGRDKDEL--YSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehh---hhhhcccHHHH--HHHHHHHHHHHhcCCcceeeecccc
Confidence 3778899999999887 456666665655543211 000000000 0 1124445667889999999999999
Q ss_pred CCCCCCCccC----CCCCCCCEEEeeCCCCCccchhhHhh-hhhhhhhhhccCCCccchhhhccccccccCCCCCCCccE
Q 001271 98 PARDPTPLSL----LPFCRLKVLELRGCDLSTSAAKGLLE-LRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSF 172 (1111)
Q Consensus 98 ~Is~~iP~sL----s~L~nL~~LdLS~N~Ls~~~P~~L~~-L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~ 172 (1111)
.+....|..+ ++-+.|.+|.|++|.+....-..++. +.+ +..|+ ....-+.|+.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~-----la~nK----------------Kaa~kp~Le~ 161 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFH-----LAYNK----------------KAADKPKLEV 161 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHH-----HHHHh----------------hhccCCCceE
Confidence 9987766544 45689999999999985322222221 111 11221 1123358899
Q ss_pred EEccCCccccchh-----hhcCCCCCcEEEccCCCCCC--C-----CCcCCCCCCcEEECCCCCCCCccc-----ccccc
Q 001271 173 VSCSCNRLVIMDE-----SLQLLPAVETLDLSRNKFAK--V-----DNLRKCVNLKHLDLGFNNLRSIAA-----FSEVS 235 (1111)
Q Consensus 173 L~Ls~N~LssLP~-----~L~~L~nL~~LdLS~N~Ls~--L-----~~L~~L~sL~~LdLS~N~Lt~L~~-----l~~~L 235 (1111)
+.+..|++..-|. .+..-.+|+.+.+..|.|.. + ..+..+.+|+.|||..|-++.... ....+
T Consensus 162 vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W 241 (388)
T COG5238 162 VICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW 241 (388)
T ss_pred EEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence 9999999886553 23334578888888888764 2 245566778888888887764332 22223
Q ss_pred ccceEeeccCCccCC
Q 001271 236 CHIVKLVLRNNALTT 250 (1111)
Q Consensus 236 ~sL~~L~LS~N~Lt~ 250 (1111)
+.|+.|.+..|-++.
T Consensus 242 ~~lrEL~lnDClls~ 256 (388)
T COG5238 242 NLLRELRLNDCLLSN 256 (388)
T ss_pred chhhhccccchhhcc
Confidence 445555555555543
No 46
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=3.6e-07 Score=100.37 Aligned_cols=116 Identities=30% Similarity=0.427 Sum_probs=95.6
Q ss_pred CCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEec
Q 001271 212 CVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLE 291 (1111)
Q Consensus 212 L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~Ls 291 (1111)
+.+.+.|++-++.|++|.-. ..++.|+.|.|+-|+|+.+..+..|++|+.|.|..|.|.++.++..|.++|+|+.|+|.
T Consensus 18 l~~vkKLNcwg~~L~DIsic-~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISIC-EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHHHH-HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 44566777777777766533 23578888888888888888888999999999999999999999999999999999999
Q ss_pred CCCCCCC--ccchhhHhhhcCCCCeeecCCCcCChhHHHHH
Q 001271 292 GNPLCCS--RWYRAQVFSYFAHPAKLKVDGKEISTRELWER 330 (1111)
Q Consensus 292 gNpLs~~--~~~r~~if~~l~~L~~L~LdgN~It~~E~~~~ 330 (1111)
.||-+.. ..||..++..+++| ..||+.+++..|...+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnL--kKLDnv~VteeEle~A 135 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNL--KKLDNVPVTEEELEEA 135 (388)
T ss_pred cCCcccccchhHHHHHHHHcccc--hhccCccccHHHHHHH
Confidence 9997655 68999999988655 4788999999887655
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=3.5e-06 Score=93.54 Aligned_cols=204 Identities=22% Similarity=0.215 Sum_probs=126.3
Q ss_pred cccccCCCCCcc--hhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCcc-chhhHhhhhhhhhhh
Q 001271 65 AYVSDLGDHRAL--EQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS-AAKGLLELRHTLEKI 141 (1111)
Q Consensus 65 l~vLdLs~n~~L--~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~-~P~~L~~L~~LleLl 141 (1111)
+..+||.+|... .++..++.+||.|+.|+|+.|.+...+-..=..+.+|+.|-|.+..+.-. .-..+..++.+.++.
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence 345788888654 46778899999999999999999754432114678999999999888632 234556677777777
Q ss_pred hccCCCccchhhhccccccccCCCCCCCccEEEccCCccccchhh---hcCCCCCcEEEccCCCCCCCCCcCCCCCCcEE
Q 001271 142 ICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDES---LQLLPAVETLDLSRNKFAKVDNLRKCVNLKHL 218 (1111)
Q Consensus 142 Ls~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~~---L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~L 218 (1111)
++.| +++.+++..|.+...... +..++.+..+.++-|++.. -++++..+
T Consensus 153 mS~N-----------------------~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r-----~Fpnv~sv 204 (418)
T KOG2982|consen 153 MSDN-----------------------SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR-----IFPNVNSV 204 (418)
T ss_pred hccc-----------------------hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh-----hcccchhe
Confidence 7777 344555555544432211 1122222223333333322 23566666
Q ss_pred ECCCCCCCCccc--cccccccceEeeccCCccCCc---ccCCCCCCCCEEEccCCCCCCCc-----hhhhhcCCCCCcEE
Q 001271 219 DLGFNNLRSIAA--FSEVSCHIVKLVLRNNALTTL---RGIENLKSLEGLDISYNIISTFS-----ELEFLASLPYLLNL 288 (1111)
Q Consensus 219 dLS~N~Lt~L~~--l~~~L~sL~~L~LS~N~Lt~L---~~L~~L~sL~~LdLS~N~Is~l~-----~l~~L~~L~~L~~L 288 (1111)
.+..|.|..... .+..+|.+..|+|+.|+|... ..+..++.|..|.+++|.|.+-- ..-.++.+++++.|
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 666676665543 233356677778888877765 46777888888888888776411 11234667777776
Q ss_pred EecCCCCCCC
Q 001271 289 WLEGNPLCCS 298 (1111)
Q Consensus 289 ~LsgNpLs~~ 298 (1111)
+ |-.|+..
T Consensus 285 N--GskIss~ 292 (418)
T KOG2982|consen 285 N--GSKISSR 292 (418)
T ss_pred c--Ccccchh
Confidence 5 3466543
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.91 E-value=8.1e-06 Score=104.28 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=66.7
Q ss_pred HHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCC-ccchhhhcccc
Q 001271 80 RRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST-NALRHVFASRI 158 (1111)
Q Consensus 80 p~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L-~sL~~l~~~~I 158 (1111)
..+|..++.|++|||++|.-.+.+|..++.|-+|++|+|++..+. .+|.++.+|+.|..|++..+.. ..++.+
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i----- 637 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI----- 637 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch-----
Confidence 446888999999999988877789999999999999999999997 4888999999888887776631 111111
Q ss_pred ccccCCCCCCCccEEEccCCc
Q 001271 159 VEIKDSPQWNRLSFVSCSCNR 179 (1111)
Q Consensus 159 ~~L~~l~~L~~L~~L~Ls~N~ 179 (1111)
...+.+|++|.+..-.
T Consensus 638 -----~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 638 -----LLELQSLRVLRLPRSA 653 (889)
T ss_pred -----hhhcccccEEEeeccc
Confidence 1235677777775543
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.81 E-value=6.7e-06 Score=105.02 Aligned_cols=260 Identities=18% Similarity=0.097 Sum_probs=151.1
Q ss_pred cCCcEEEecCCCccchHHhhhhcccchhhccCCC-----------ccccc-cccccCCCCCcchhHHHHhcCCCCCcEEE
Q 001271 26 EGSIVLKLNPAGLHYVQSRLEALRELERLLAGAP-----------LDYLR-AYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (1111)
Q Consensus 26 ~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~-----------l~~Lr-l~vLdLs~n~~L~~Lp~~L~~L~nLk~Ld 93 (1111)
...+...+..+.+..++...... +|..+..... +..+. +.+|||++|..+.++|..++.|-+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 34566677777776665544433 2322211110 11122 23799999999999999999999999999
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEE
Q 001271 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFV 173 (1111)
Q Consensus 94 Ls~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L 173 (1111)
|++..+. .+|..|.+|+.|.+||+..+.-...+|..+..+.+|..+.+.... ... ....+..+..+.+|+.+
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~------~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSN------DKLLLKELENLEHLENL 673 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-ccc------chhhHHhhhcccchhhh
Confidence 9999998 889999999999999999988666667777778888877754432 001 11112222344555555
Q ss_pred EccCCccccchhhhcCCCCCc----EEEccCCCC-CCCCCcCCCCCCcEEECCCCCCCCccccc------cc-cccceEe
Q 001271 174 SCSCNRLVIMDESLQLLPAVE----TLDLSRNKF-AKVDNLRKCVNLKHLDLGFNNLRSIAAFS------EV-SCHIVKL 241 (1111)
Q Consensus 174 ~Ls~N~LssLP~~L~~L~nL~----~LdLS~N~L-s~L~~L~~L~sL~~LdLS~N~Lt~L~~l~------~~-L~sL~~L 241 (1111)
....... .+-..+..++.|. .+.+.++.. +.+..+..+.+|+.|.+.++.+..+.... .. ++++..+
T Consensus 674 s~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 674 SITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred eeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 5543333 1111222233222 333323222 22346777788888888887776432210 01 2334433
Q ss_pred eccCC-ccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCC
Q 001271 242 VLRNN-ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (1111)
Q Consensus 242 ~LS~N-~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs 296 (1111)
...++ .+..+.+....++|+.|.+........+. .....+..+..+.+..+.+.
T Consensus 753 ~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i-~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 753 SILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII-PKLKALLELKELILPFNKLE 807 (889)
T ss_pred HhhccccccccchhhccCcccEEEEecccccccCC-CHHHHhhhcccEEecccccc
Confidence 33333 23333344456888888888775554332 44455555555555555544
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.78 E-value=2.5e-05 Score=86.02 Aligned_cols=215 Identities=18% Similarity=0.119 Sum_probs=128.0
Q ss_pred HhcCCCCCcEEEccCCCCCCC----CCccCCCCCCCCEEEeeCCCCCc---cchhhHhhhhhhhhhhhccCCCccchhhh
Q 001271 82 ILKLLTSLKVVSALPPPARDP----TPLSLLPFCRLKVLELRGCDLST---SAAKGLLELRHTLEKIICHNSTNALRHVF 154 (1111)
Q Consensus 82 ~L~~L~nLk~LdLs~N~Is~~----iP~sLs~L~nL~~LdLS~N~Ls~---~~P~~L~~L~~LleLlLs~N~L~sL~~l~ 154 (1111)
.+..+..++.++|++|.|... +...+.+-.+|+..+++.-.... .++..+.-|
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~L-------------------- 84 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVML-------------------- 84 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHH--------------------
Confidence 344577788888888887643 22334455677777776543321 122222111
Q ss_pred ccccccccCCCCCCCccEEEccCCccc-cchh----hhcCCCCCcEEEccCCCCCCCC---------------CcCCCCC
Q 001271 155 ASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDE----SLQLLPAVETLDLSRNKFAKVD---------------NLRKCVN 214 (1111)
Q Consensus 155 ~~~I~~L~~l~~L~~L~~L~Ls~N~Ls-sLP~----~L~~L~nL~~LdLS~N~Ls~L~---------------~L~~L~s 214 (1111)
++.+.+|++|+.++|+.|.+. ..|+ .+..-+.|.+|.|++|.+..+. ....-|.
T Consensus 85 ------l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~ 158 (388)
T COG5238 85 ------LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPK 158 (388)
T ss_pred ------HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCC
Confidence 112345678888888888776 3333 4566778888888888776542 1223467
Q ss_pred CcEEECCCCCCCCccc-----cccccccceEeeccCCccCCc-------ccCCCCCCCCEEEccCCCCCCCchh---hhh
Q 001271 215 LKHLDLGFNNLRSIAA-----FSEVSCHIVKLVLRNNALTTL-------RGIENLKSLEGLDISYNIISTFSEL---EFL 279 (1111)
Q Consensus 215 L~~LdLS~N~Lt~L~~-----l~~~L~sL~~L~LS~N~Lt~L-------~~L~~L~sL~~LdLS~N~Is~l~~l---~~L 279 (1111)
|++.....|++..-+. ....-..|+.+.+..|.|..- -++..+.+|+.|||..|-++..... ..+
T Consensus 159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 8888888888775443 111124677888888877542 2455677888888888877754321 345
Q ss_pred cCCCCCcEEEecCCCCCCCc---cchhhHhhhcCCCCeeecCCCcC
Q 001271 280 ASLPYLLNLWLEGNPLCCSR---WYRAQVFSYFAHPAKLKVDGKEI 322 (1111)
Q Consensus 280 ~~L~~L~~L~LsgNpLs~~~---~~r~~if~~l~~L~~L~LdgN~I 322 (1111)
..++.|+.|.+..+-++... -++...-..+++|..+.++.|.+
T Consensus 239 ~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 66677788888777776431 11111112334556666666654
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.54 E-value=9.1e-05 Score=78.94 Aligned_cols=110 Identities=19% Similarity=0.193 Sum_probs=87.4
Q ss_pred CcEEECCCCCCCCccccccccccceEeeccCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCC
Q 001271 215 LKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNP 294 (1111)
Q Consensus 215 L~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNp 294 (1111)
=+.++|.+.++..+..+.....+...++|++|.|..++.|..++.|.+|.|++|+|+.+.+ ....-+|+|+.|.|.+|.
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcc
Confidence 4456666666665555444456788899999999999999999999999999999999885 344456889999999999
Q ss_pred CCCCccchhhHhhhcCCCCeeecCCCcCChhHH
Q 001271 295 LCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (1111)
Q Consensus 295 Ls~~~~~r~~if~~l~~L~~L~LdgN~It~~E~ 327 (1111)
|+...++.+ +..++.|+.+.+-+|++.....
T Consensus 100 i~~l~dl~p--La~~p~L~~Ltll~Npv~~k~~ 130 (233)
T KOG1644|consen 100 IQELGDLDP--LASCPKLEYLTLLGNPVEHKKN 130 (233)
T ss_pred hhhhhhcch--hccCCccceeeecCCchhcccC
Confidence 987766554 5578899999999999976543
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.54 E-value=8.8e-05 Score=60.79 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=26.7
Q ss_pred CccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCc
Q 001271 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNL 209 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L 209 (1111)
+|++|+|++|+|+.+|..+..|++|+.|+|++|+|+.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence 56777777777777766677777777777777776665443
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.51 E-value=9.7e-06 Score=81.69 Aligned_cols=128 Identities=25% Similarity=0.267 Sum_probs=82.0
Q ss_pred CccEEEccCCccccchhhh---cCCCCCcEEEccCCCCCCCC-CcC-CCCCCcEEECCCCCCCCccccccccccceEeec
Q 001271 169 RLSFVSCSCNRLVIMDESL---QLLPAVETLDLSRNKFAKVD-NLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssLP~~L---~~L~nL~~LdLS~N~Ls~L~-~L~-~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~L 243 (1111)
.+..++|+.++|..+++.+ .....|+..+|++|.+..+| .|. .++.+++|+|++|.|+.+|.....++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 5667888888887666644 34455666778888887765 333 345677777787777777766656777777777
Q ss_pred cCCccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001271 244 RNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (1111)
Q Consensus 244 S~N~Lt~L~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~ 298 (1111)
+.|.|...+ .+..+.+|..|+...|.+..++.--....++.| ..+.++|+...
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al--~~lgnepl~~~ 161 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPAL--IKLGNEPLGDE 161 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHH--HHhcCCccccc
Confidence 777776653 445577777777777777776642111222222 33455666544
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.51 E-value=5.4e-05 Score=83.26 Aligned_cols=69 Identities=29% Similarity=0.312 Sum_probs=51.2
Q ss_pred CCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChhH
Q 001271 256 NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (1111)
Q Consensus 256 ~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E 326 (1111)
.+|+|++|+|+.|+|..+..+..+..+.+|..|++..|..+....|+..+|..+ +++.+||+..+...+
T Consensus 89 ~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll--~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL--PSLKYLDGCDVDGEE 157 (260)
T ss_pred hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh--hhhccccccccCCcc
Confidence 447777777777777766555667778888899999998888788999988877 455567777665444
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=5.9e-06 Score=83.19 Aligned_cols=128 Identities=20% Similarity=0.231 Sum_probs=84.9
Q ss_pred CCcEEEccCCCCCCCC----CcCCCCCCcEEECCCCCCCCcccc-ccccccceEeeccCCccCCcc-cCCCCCCCCEEEc
Q 001271 192 AVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDI 265 (1111)
Q Consensus 192 nL~~LdLS~N~Ls~L~----~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L~LS~N~Lt~L~-~L~~L~sL~~LdL 265 (1111)
.+..++|+.++|..++ .+.....|+..+|++|.+..+++- ...++.++.|+|++|.|..+| .+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 3566778888777553 455666777888888888887763 334567888888888888875 5777888888888
Q ss_pred cCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChh
Q 001271 266 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (1111)
Q Consensus 266 S~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~ 325 (1111)
+.|.|...+. .+..+.+|-.|+..+|.+...+ ... -+-..+-...+.++++...
T Consensus 108 ~~N~l~~~p~--vi~~L~~l~~Lds~~na~~eid---~dl-~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 108 RFNPLNAEPR--VIAPLIKLDMLDSPENARAEID---VDL-FYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred ccCccccchH--HHHHHHhHHHhcCCCCccccCc---HHH-hccccHHHHHhcCCccccc
Confidence 8888887763 4445777777777777765332 111 1223344555655666543
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=4.6e-06 Score=92.59 Aligned_cols=192 Identities=21% Similarity=0.219 Sum_probs=104.0
Q ss_pred cccCCCCCcchhHHHHhcCCC--CCcEEEccCCCCCCC-CCccCCCC-CCCCEEEeeCCCCCccchh-hHhhhhhhhhhh
Q 001271 67 VSDLGDHRALEQLRRILKLLT--SLKVVSALPPPARDP-TPLSLLPF-CRLKVLELRGCDLSTSAAK-GLLELRHTLEKI 141 (1111)
Q Consensus 67 vLdLs~n~~L~~Lp~~L~~L~--nLk~LdLs~N~Is~~-iP~sLs~L-~nL~~LdLS~N~Ls~~~P~-~L~~L~~LleLl 141 (1111)
.+|+.+-+.- |..+..+. ....+.+...-+.+. +...+..+ ..|++|||+...|+..-.. -+..
T Consensus 140 ~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~-------- 208 (419)
T KOG2120|consen 140 TLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQ-------- 208 (419)
T ss_pred eeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHH--------
Confidence 4566554322 33333332 345555543333322 22333333 4699999999888742111 1111
Q ss_pred hccCCCccchhhhccccccccCCCCCCCccEEEccCCccc-cchhhhcCCCCCcEEEccCC-CCCCCC---CcCCCCCCc
Q 001271 142 ICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRN-KFAKVD---NLRKCVNLK 216 (1111)
Q Consensus 142 Ls~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Ls-sLP~~L~~L~nL~~LdLS~N-~Ls~L~---~L~~L~sL~ 216 (1111)
+.+|+.|.|.+++|. .+...+..-.+|+.|+|+.+ .++... -+.+++.|.
T Consensus 209 -------------------------C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 209 -------------------------CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred -------------------------HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 336666666776666 44455666677777777654 344421 355667777
Q ss_pred EEECCCCCCCCcc--c-cccccccceEeeccCCcc----CCcc-cCCCCCCCCEEEccCCC-CCCCchhhhhcCCCCCcE
Q 001271 217 HLDLGFNNLRSIA--A-FSEVSCHIVKLVLRNNAL----TTLR-GIENLKSLEGLDISYNI-ISTFSELEFLASLPYLLN 287 (1111)
Q Consensus 217 ~LdLS~N~Lt~L~--~-l~~~L~sL~~L~LS~N~L----t~L~-~L~~L~sL~~LdLS~N~-Is~l~~l~~L~~L~~L~~ 287 (1111)
.|+|+++.+..-. . ....-++|+.|+|+++.= ..+. -...+|+|.+|||++|- |+. ..+..+..++.|++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQH 342 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchhee
Confidence 7777777655311 1 111135677777776521 1222 23456777777777663 443 33455667777777
Q ss_pred EEecCCCC
Q 001271 288 LWLEGNPL 295 (1111)
Q Consensus 288 L~LsgNpL 295 (1111)
|.|+.+..
T Consensus 343 lSlsRCY~ 350 (419)
T KOG2120|consen 343 LSLSRCYD 350 (419)
T ss_pred eehhhhcC
Confidence 77776654
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.28 E-value=0.00024 Score=58.23 Aligned_cols=40 Identities=33% Similarity=0.468 Sum_probs=26.4
Q ss_pred CCCcEEEccCCCCCCCCC-cCCCCCCcEEECCCCCCCCccc
Q 001271 191 PAVETLDLSRNKFAKVDN-LRKCVNLKHLDLGFNNLRSIAA 230 (1111)
Q Consensus 191 ~nL~~LdLS~N~Ls~L~~-L~~L~sL~~LdLS~N~Lt~L~~ 230 (1111)
++|++|+|++|+|+.++. +.+|++|+.|++++|+|+.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 356777777777777665 7777777777777777766554
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.20 E-value=0.00018 Score=90.04 Aligned_cols=105 Identities=16% Similarity=0.072 Sum_probs=50.9
Q ss_pred CCCccEEEccCCccc--cchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccc--cccccccceEee
Q 001271 167 WNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA--FSEVSCHIVKLV 242 (1111)
Q Consensus 167 L~~L~~L~Ls~N~Ls--sLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~--l~~~L~sL~~L~ 242 (1111)
+|+|+.|.+++-.+. .+-....++|+|..||+|+.+++.+.+++.+++|+.|.+.+=.+..-.. ..+.+++|+.||
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD 226 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence 445555555554443 1222334556666666666666666556666666666555544433221 122345555555
Q ss_pred ccCCccCCc--------ccCCCCCCCCEEEccCCCCC
Q 001271 243 LRNNALTTL--------RGIENLKSLEGLDISYNIIS 271 (1111)
Q Consensus 243 LS~N~Lt~L--------~~L~~L~sL~~LdLS~N~Is 271 (1111)
+|....... +.-..+|+|+.||.|++.+.
T Consensus 227 IS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 227 ISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 554433221 11223555555555554444
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.19 E-value=0.0016 Score=76.92 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=28.8
Q ss_pred hcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccch
Q 001271 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAA 128 (1111)
Q Consensus 83 L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P 128 (1111)
+..+.+++.|++++|.|+ .+|. + -.+|+.|.+++|.--..+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP 89 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLP 89 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCC
Confidence 556789999999999877 4552 2 2469999998754323344
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.00 E-value=0.0014 Score=77.17 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=13.8
Q ss_pred CCCCCCCEEEeeCCCCCc
Q 001271 108 LPFCRLKVLELRGCDLST 125 (1111)
Q Consensus 108 s~L~nL~~LdLS~N~Ls~ 125 (1111)
..+.+|+.|++++|.|+.
T Consensus 49 ~~~~~l~~L~Is~c~L~s 66 (426)
T PRK15386 49 EEARASGRLYIKDCDIES 66 (426)
T ss_pred HHhcCCCEEEeCCCCCcc
Confidence 345788899999887765
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00022 Score=79.60 Aligned_cols=172 Identities=22% Similarity=0.162 Sum_probs=111.1
Q ss_pred cccccCCCCCcc-hhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCC-CCccchhhHhhhhhhhhhhh
Q 001271 65 AYVSDLGDHRAL-EQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-LSTSAAKGLLELRHTLEKII 142 (1111)
Q Consensus 65 l~vLdLs~n~~L-~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~-Ls~~~P~~L~~L~~LleLlL 142 (1111)
+..+||+.-... ..+...+..+.+|+.|.|.++++.+.+...+..-.+|+.|||+.+. ++. .++. +.+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~---n~~~-------ll~ 256 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE---NALQ-------LLL 256 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch---hHHH-------HHH
Confidence 556777765433 4567788889999999999999998888888888999999998864 332 1111 111
Q ss_pred ccCCCccchhhhccccccccCCCCCCCccEEEccCCccc--cchhhhcC-CCCCcEEEccCCC----CCCCC-CcCCCCC
Q 001271 143 CHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV--IMDESLQL-LPAVETLDLSRNK----FAKVD-NLRKCVN 214 (1111)
Q Consensus 143 s~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Ls--sLP~~L~~-L~nL~~LdLS~N~----Ls~L~-~L~~L~s 214 (1111)
..++.|..|+|+.+.+. .+...+.. -++|+.|+|++.. ...+. -...+++
T Consensus 257 ----------------------~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~ 314 (419)
T KOG2120|consen 257 ----------------------SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN 314 (419)
T ss_pred ----------------------HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence 12456777777777665 11111222 2467777777652 12232 2346788
Q ss_pred CcEEECCCCC-CCC-ccccccccccceEeeccCCccCCc---ccCCCCCCCCEEEccCC
Q 001271 215 LKHLDLGFNN-LRS-IAAFSEVSCHIVKLVLRNNALTTL---RGIENLKSLEGLDISYN 268 (1111)
Q Consensus 215 L~~LdLS~N~-Lt~-L~~l~~~L~sL~~L~LS~N~Lt~L---~~L~~L~sL~~LdLS~N 268 (1111)
|.+|||+.|. |+. ....+..++.|++|.|+.|..-.. -.+...|+|.+||+-+.
T Consensus 315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 8888888764 332 222344578888888888865433 25677888999988664
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=7.8e-05 Score=82.50 Aligned_cols=79 Identities=25% Similarity=0.341 Sum_probs=55.5
Q ss_pred CCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccc--cccccceEeeccC
Q 001271 168 NRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFS--EVSCHIVKLVLRN 245 (1111)
Q Consensus 168 ~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~--~~L~sL~~L~LS~ 245 (1111)
.+.+.|++.++.|+.| .....++.|+.|.||-|+|+.+..+..|++|+.|+|..|.|..+..+. ..+|+|+.|.|..
T Consensus 19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 3667788888888766 345567888888888888888777777777877877777777766532 2355666666655
Q ss_pred Cc
Q 001271 246 NA 247 (1111)
Q Consensus 246 N~ 247 (1111)
|.
T Consensus 98 NP 99 (388)
T KOG2123|consen 98 NP 99 (388)
T ss_pred CC
Confidence 53
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.68 E-value=0.00082 Score=84.37 Aligned_cols=128 Identities=24% Similarity=0.280 Sum_probs=65.9
Q ss_pred CCccEEEccCCccc--cchhhh-cCCCCCcEEEccCCCCCCCC---CcCCCCCCcEEECCCCCCCCccccccccccceEe
Q 001271 168 NRLSFVSCSCNRLV--IMDESL-QLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKL 241 (1111)
Q Consensus 168 ~~L~~L~Ls~N~Ls--sLP~~L-~~L~nL~~LdLS~N~Ls~L~---~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L 241 (1111)
.+|++|++++...- .-|..+ ..||+|+.|.+++-.+..-+ -+.++++|..||+|+.+++.+... ..+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GI-S~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGI-SRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHH-hccccHHHH
Confidence 36777777765332 112222 34667777776665544321 344556666666666666655322 234566666
Q ss_pred eccCCccCCc---ccCCCCCCCCEEEccCCCCCCCchh-----hhhcCCCCCcEEEecCCCCC
Q 001271 242 VLRNNALTTL---RGIENLKSLEGLDISYNIISTFSEL-----EFLASLPYLLNLWLEGNPLC 296 (1111)
Q Consensus 242 ~LS~N~Lt~L---~~L~~L~sL~~LdLS~N~Is~l~~l-----~~L~~L~~L~~L~LsgNpLs 296 (1111)
.+.+=.+..- ..+.+|++|+.||+|..+....+.+ +.-..+|+|+.||.+|..+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 6555444432 2455566666666665544443311 12233556666666655543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.003 Score=69.84 Aligned_cols=98 Identities=21% Similarity=0.204 Sum_probs=73.8
Q ss_pred ccccceEeeccCCccCCcccCCCCCCCCEEEccCCCCCCCchhhh-hcCCCCCcEEEecCCCCCCCccchhhHhhhcCCC
Q 001271 234 VSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEF-LASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHP 312 (1111)
Q Consensus 234 ~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~-L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L 312 (1111)
.+..|+.|.+.+..++++..+..+++|+.|.++.|.......+.. ...+|+|++|+|++|.|.....+++ ++.+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcch
Confidence 346777888888888888888899999999999994443222222 3455999999999999986544443 5577889
Q ss_pred CeeecCCCcCChhHHHHHHHH
Q 001271 313 AKLKVDGKEISTRELWERQLI 333 (1111)
Q Consensus 313 ~~L~LdgN~It~~E~~~~~~l 333 (1111)
..+++.+++++...+.+..++
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred hhhhcccCCccccccHHHHHH
Confidence 999999999988666554444
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.54 E-value=0.044 Score=53.14 Aligned_cols=113 Identities=15% Similarity=0.301 Sum_probs=45.1
Q ss_pred CCCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccccc-ccccceEe
Q 001271 166 QWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSE-VSCHIVKL 241 (1111)
Q Consensus 166 ~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l~~-~L~sL~~L 241 (1111)
.+.+|+.+.+.. .+..|+. .|..+++|+.+.+..+ +..++ .+..+++|+.+.+.. .+..++.... .+++|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 344666666663 4555554 5666666777777664 55543 456666666666654 4444443222 25566666
Q ss_pred eccCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCC
Q 001271 242 VLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYL 285 (1111)
Q Consensus 242 ~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L 285 (1111)
.+..+ +..+ ..+.++ +|+.+.+.. .+..++. ..|.+.++|
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~-~~F~~~~~l 128 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE-NAFKNCTKL 128 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT-B-SS-----GGG-----
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC-ccccccccC
Confidence 66544 4444 245554 566665543 3333333 344444444
No 66
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=95.22 E-value=0.0062 Score=73.11 Aligned_cols=90 Identities=40% Similarity=0.511 Sum_probs=65.0
Q ss_pred cccccceEeeccCCccCCcccCC----CCCCCCEEEccCC--CCCCCchhhhhcCCCCCcEEEecCCCCCCCc----cch
Q 001271 233 EVSCHIVKLVLRNNALTTLRGIE----NLKSLEGLDISYN--IISTFSELEFLASLPYLLNLWLEGNPLCCSR----WYR 302 (1111)
Q Consensus 233 ~~L~sL~~L~LS~N~Lt~L~~L~----~L~sL~~LdLS~N--~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~----~~r 302 (1111)
...+.+..++|++|+|..+..+. ..|+|..|+|++| .+.....+..++.+ .|+.|.|.|||++..- .|.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccchhhhHHHH
Confidence 34678888999999988875443 4589999999999 66665554455444 5999999999998652 233
Q ss_pred hhHhhhcCCCCeeecCCCcCChh
Q 001271 303 AQVFSYFAHPAKLKVDGKEISTR 325 (1111)
Q Consensus 303 ~~if~~l~~L~~L~LdgN~It~~ 325 (1111)
..+...| |+++.|||..+..+
T Consensus 294 ~~i~~~F--PKL~~LDG~ev~~~ 314 (585)
T KOG3763|consen 294 SAIRELF--PKLLRLDGVEVQPE 314 (585)
T ss_pred HHHHHhc--chheeecCcccCcc
Confidence 3333445 78889999988654
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.69 E-value=0.14 Score=49.73 Aligned_cols=110 Identities=13% Similarity=0.253 Sum_probs=51.2
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccc
Q 001271 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (1111)
Q Consensus 82 ~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L 161 (1111)
.|.++.+|+.+.+.. .+.......|..+++|+.+.+..+ +.......+..+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~--------------------------- 57 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNC--------------------------- 57 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT----------------------------
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecc---------------------------
Confidence 467777888888764 565555667777878888888765 544322233222
Q ss_pred cCCCCCCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccc
Q 001271 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA 230 (1111)
Q Consensus 162 ~~l~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~ 230 (1111)
.+|+.+.+.. .+..++. .|..+++|+.+.+..+ +..++ .+.++ +|+.+.+.. .+..++.
T Consensus 58 ------~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~ 119 (129)
T PF13306_consen 58 ------KSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE 119 (129)
T ss_dssp ------TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS---
T ss_pred ------cccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC
Confidence 3456666654 4444444 4555667777777654 44432 45555 666666654 4444443
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.65 E-value=0.0025 Score=76.91 Aligned_cols=181 Identities=25% Similarity=0.185 Sum_probs=111.5
Q ss_pred CcEEEccCCCCCCCCC----ccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCC
Q 001271 89 LKVVSALPPPARDPTP----LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (1111)
Q Consensus 89 Lk~LdLs~N~Is~~iP----~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l 164 (1111)
|..|.|.+|.+..... ..+...+.|..|+|++|.+.......+.+-.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l----------------------------- 139 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGL----------------------------- 139 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhc-----------------------------
Confidence 6666677776654322 2344556677777777777532222111110
Q ss_pred CCC-CCccEEEccCCccc-----cchhhhcCCCCCcEEEccCCCCCCC------CCc----CCCCCCcEEECCCCCCCCc
Q 001271 165 PQW-NRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNKFAKV------DNL----RKCVNLKHLDLGFNNLRSI 228 (1111)
Q Consensus 165 ~~L-~~L~~L~Ls~N~Ls-----sLP~~L~~L~nL~~LdLS~N~Ls~L------~~L----~~L~sL~~LdLS~N~Lt~L 228 (1111)
... ..|++|.+..|.++ .+...+.....|+.|+++.|.+... ..+ ....++++|.|++|.++..
T Consensus 140 ~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~ 219 (478)
T KOG4308|consen 140 RLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSS 219 (478)
T ss_pred ccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChH
Confidence 000 24566666666666 4455677778888889988887531 123 3467888999999888732
Q ss_pred c--c---ccccccc-ceEeeccCCccCCc------ccCCCC-CCCCEEEccCCCCCCCchh---hhhcCCCCCcEEEecC
Q 001271 229 A--A---FSEVSCH-IVKLVLRNNALTTL------RGIENL-KSLEGLDISYNIISTFSEL---EFLASLPYLLNLWLEG 292 (1111)
Q Consensus 229 ~--~---l~~~L~s-L~~L~LS~N~Lt~L------~~L~~L-~sL~~LdLS~N~Is~l~~l---~~L~~L~~L~~L~Lsg 292 (1111)
. . .....+. +..|++.+|.+.+. +.+..+ +.++.++++.|.|+..... ..+...+.++.+.++.
T Consensus 220 ~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~ 299 (478)
T KOG4308|consen 220 SCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSN 299 (478)
T ss_pred HHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhccc
Confidence 2 1 1222233 66688888888753 345555 6788888888888864431 3345567888888888
Q ss_pred CCCCCC
Q 001271 293 NPLCCS 298 (1111)
Q Consensus 293 NpLs~~ 298 (1111)
|++...
T Consensus 300 n~l~~~ 305 (478)
T KOG4308|consen 300 NPLTDY 305 (478)
T ss_pred CccccH
Confidence 888644
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.72 E-value=0.0064 Score=73.50 Aligned_cols=72 Identities=28% Similarity=0.276 Sum_probs=47.9
Q ss_pred chhHHHHhcCCCCCcEEEccCCCCCCCCC----ccCCCC-CCCCEEEeeCCCCCccc----hhhHhhhhhhhhhhhccCC
Q 001271 76 LEQLRRILKLLTSLKVVSALPPPARDPTP----LSLLPF-CRLKVLELRGCDLSTSA----AKGLLELRHTLEKIICHNS 146 (1111)
Q Consensus 76 L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP----~sLs~L-~nL~~LdLS~N~Ls~~~----P~~L~~L~~LleLlLs~N~ 146 (1111)
...+...+..++.|..|+|++|.+.+... ..+... ..|++|++..|.++... +..+.....+.++++..|.
T Consensus 104 ~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 104 AEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc
Confidence 44567788889999999999999985322 223333 67888999999988543 3344444455555555554
Q ss_pred C
Q 001271 147 T 147 (1111)
Q Consensus 147 L 147 (1111)
+
T Consensus 184 l 184 (478)
T KOG4308|consen 184 L 184 (478)
T ss_pred c
Confidence 3
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.34 E-value=0.12 Score=60.93 Aligned_cols=39 Identities=26% Similarity=0.188 Sum_probs=22.2
Q ss_pred hcCCCCCcEEEccCCCCCCC--CCccCCCCCCCCEEEeeCC
Q 001271 83 LKLLTSLKVVSALPPPARDP--TPLSLLPFCRLKVLELRGC 121 (1111)
Q Consensus 83 L~~L~nLk~LdLs~N~Is~~--iP~sLs~L~nL~~LdLS~N 121 (1111)
...++.|+.|.+..+.-... .-......++|+.|+++++
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 34467777777766532222 2233445677777777763
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=87.88 E-value=0.3 Score=34.20 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=16.4
Q ss_pred CccEEEccCCccccchhhhcC
Q 001271 169 RLSFVSCSCNRLVIMDESLQL 189 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssLP~~L~~ 189 (1111)
+|++|+|++|+|+.+|..|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888888877654
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.59 E-value=0.35 Score=57.06 Aligned_cols=229 Identities=17% Similarity=0.091 Sum_probs=116.6
Q ss_pred HhcCCCCCcEEEccCCC-CCCCCCc-cCCCCCCCCEEEeeCCC-CCccchh-hHhhhhhhhhhhhccCCCccchhhhccc
Q 001271 82 ILKLLTSLKVVSALPPP-ARDPTPL-SLLPFCRLKVLELRGCD-LSTSAAK-GLLELRHTLEKIICHNSTNALRHVFASR 157 (1111)
Q Consensus 82 ~L~~L~nLk~LdLs~N~-Is~~iP~-sLs~L~nL~~LdLS~N~-Ls~~~P~-~L~~L~~LleLlLs~N~L~sL~~l~~~~ 157 (1111)
.-..+++|++|+|..+. |+...-. -...+++|++|+++.|. |++.... -..+...+..+.+.+..-..+..+.
T Consensus 185 la~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~--- 261 (483)
T KOG4341|consen 185 LARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALL--- 261 (483)
T ss_pred HHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHH---
Confidence 44557888888887733 4432222 12346888888888875 3331111 1112222222222221000000000
Q ss_pred cccccCCCCCCCccEEEccCC-ccccch--hhhcCCCCCcEEEccCCC-CCCC--CCc-CCCCCCcEEECCCCC-CCC--
Q 001271 158 IVEIKDSPQWNRLSFVSCSCN-RLVIMD--ESLQLLPAVETLDLSRNK-FAKV--DNL-RKCVNLKHLDLGFNN-LRS-- 227 (1111)
Q Consensus 158 I~~L~~l~~L~~L~~L~Ls~N-~LssLP--~~L~~L~nL~~LdLS~N~-Ls~L--~~L-~~L~sL~~LdLS~N~-Lt~-- 227 (1111)
.+. ..+..+-.+++..+ .++... ..-..+..|+.|+.++.. ++.. ..+ .+.++|+.|-++.++ ++.
T Consensus 262 --~~~--~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 262 --KAA--AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred --HHh--ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh
Confidence 000 11223344444333 444221 122346677777776643 3332 122 345778888888774 443
Q ss_pred ccccccccccceEeeccCCccCCc----ccCCCCCCCCEEEccCCCCCCCchhhhh----cCCCCCcEEEecCCCCCCCc
Q 001271 228 IAAFSEVSCHIVKLVLRNNALTTL----RGIENLKSLEGLDISYNIISTFSELEFL----ASLPYLLNLWLEGNPLCCSR 299 (1111)
Q Consensus 228 L~~l~~~L~sL~~L~LS~N~Lt~L----~~L~~L~sL~~LdLS~N~Is~l~~l~~L----~~L~~L~~L~LsgNpLs~~~ 299 (1111)
+..+...++.|+.|++..+.+..- ..-.+++.|+.|.|+++.+..-..+..+ ..+..|..+.|++.|+....
T Consensus 338 ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 338 FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 233445567888888887755432 2335678888888887754432222222 34567888888888876432
Q ss_pred cchhhHhhhcCCCCeeecCC
Q 001271 300 WYRAQVFSYFAHPAKLKVDG 319 (1111)
Q Consensus 300 ~~r~~if~~l~~L~~L~Ldg 319 (1111)
....+...+.|+.+.|-+
T Consensus 418 --~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 418 --TLEHLSICRNLERIELID 435 (483)
T ss_pred --HHHHHhhCcccceeeeec
Confidence 233355666777665543
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.20 E-value=0.039 Score=60.48 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=57.5
Q ss_pred cCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcE
Q 001271 209 LRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLN 287 (1111)
Q Consensus 209 L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~ 287 (1111)
+......+.||++.|++..+..-+..+..|..|+++.|.+..+| .+..+..++.+++..|..+..| ..+...|.++.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p--~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP--KSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC--ccccccCCcch
Confidence 33445556666666666555544444566667777777776664 4566666777777777777777 56777888888
Q ss_pred EEecCCCCC
Q 001271 288 LWLEGNPLC 296 (1111)
Q Consensus 288 L~LsgNpLs 296 (1111)
+++.+|++.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 888888764
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=82.84 E-value=0.27 Score=57.95 Aligned_cols=137 Identities=19% Similarity=0.109 Sum_probs=82.7
Q ss_pred CCCcEEEccCC-CCCCCC---CcCCCCCCcEEECCCCC-CCC--ccccccccccceEeeccCCc-cCCc--c-cCCCCCC
Q 001271 191 PAVETLDLSRN-KFAKVD---NLRKCVNLKHLDLGFNN-LRS--IAAFSEVSCHIVKLVLRNNA-LTTL--R-GIENLKS 259 (1111)
Q Consensus 191 ~nL~~LdLS~N-~Ls~L~---~L~~L~sL~~LdLS~N~-Lt~--L~~l~~~L~sL~~L~LS~N~-Lt~L--~-~L~~L~s 259 (1111)
+.+..+++..+ .++... .-..+..|+.|+.+++. ++. +..+....++|+.|-|..++ ++.. . --.+++.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 33455554333 344432 12346778888888764 332 22345557899999999885 4443 1 2246788
Q ss_pred CCEEEccCCCCCCCchhhhh-cCCCCCcEEEecCCCCCCCccchhhH--hhhcCCCCeeecCCCcCChhHH
Q 001271 260 LEGLDISYNIISTFSELEFL-ASLPYLLNLWLEGNPLCCSRWYRAQV--FSYFAHPAKLKVDGKEISTREL 327 (1111)
Q Consensus 260 L~~LdLS~N~Is~l~~l~~L-~~L~~L~~L~LsgNpLs~~~~~r~~i--f~~l~~L~~L~LdgN~It~~E~ 327 (1111)
|+.+++..........+..+ .+.+.|+.|.|+++.+......+... -..+..+..+.|++.+...+..
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 99999988765443322222 46789999999987654332222111 1345668889999998876653
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=82.09 E-value=0.55 Score=32.91 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=10.3
Q ss_pred CCCEEEeeCCCCCccchhhH
Q 001271 112 RLKVLELRGCDLSTSAAKGL 131 (1111)
Q Consensus 112 nL~~LdLS~N~Ls~~~P~~L 131 (1111)
+|++|||++|+|+ .+|..|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp TESEEEETSSEES-EEGTTT
T ss_pred CccEEECCCCcCE-eCChhh
Confidence 3566666666665 344434
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.49 E-value=0.095 Score=57.61 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=67.8
Q ss_pred ccchh-hhcCCCCCcEEEccCCCCCCCC-CcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcc-cCCCC
Q 001271 181 VIMDE-SLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENL 257 (1111)
Q Consensus 181 ssLP~-~L~~L~nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~-~L~~L 257 (1111)
+.+|- .+..+...+.||++.|++..+. .+..++.|..|+++.|.|..++.-......+..+++..|.+...| .+...
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~ 110 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKE 110 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccccc
Confidence 34443 4556677788888888877764 677777888888888888877776666677788888888888775 67788
Q ss_pred CCCCEEEccCCCCC
Q 001271 258 KSLEGLDISYNIIS 271 (1111)
Q Consensus 258 ~sL~~LdLS~N~Is 271 (1111)
+.++.+++-.|.+.
T Consensus 111 ~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFF 124 (326)
T ss_pred CCcchhhhccCcch
Confidence 88888888887754
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=77.62 E-value=0.94 Score=53.38 Aligned_cols=107 Identities=22% Similarity=0.231 Sum_probs=54.1
Q ss_pred CCCCcEEEccCC-CCCC--C-CCcCCCCCCcEEECCCC--CCCCcc----ccccccccceEeeccCCc-cCCc--ccCC-
Q 001271 190 LPAVETLDLSRN-KFAK--V-DNLRKCVNLKHLDLGFN--NLRSIA----AFSEVSCHIVKLVLRNNA-LTTL--RGIE- 255 (1111)
Q Consensus 190 L~nL~~LdLS~N-~Ls~--L-~~L~~L~sL~~LdLS~N--~Lt~L~----~l~~~L~sL~~L~LS~N~-Lt~L--~~L~- 255 (1111)
+++|+.|.+.+. .+.. + +....++.|+.|+++++ .+...+ .....+++|+.|+++.+. ++.. ..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455666655544 2332 2 23444566666666652 111111 122234566666666665 4443 2222
Q ss_pred CCCCCCEEEccCCC-CCCCchhhhhcCCCCCcEEEecCCCCC
Q 001271 256 NLKSLEGLDISYNI-ISTFSELEFLASLPYLLNLWLEGNPLC 296 (1111)
Q Consensus 256 ~L~sL~~LdLS~N~-Is~l~~l~~L~~L~~L~~L~LsgNpLs 296 (1111)
.+++|+.|.+.++. +++..-......+++|+.|+|+++...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 26677777766555 554333233445666777777766543
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=76.17 E-value=1.7 Score=28.79 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=7.3
Q ss_pred CccEEEccCCccccch
Q 001271 169 RLSFVSCSCNRLVIMD 184 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssLP 184 (1111)
+|+.|+|++|+|+.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666665554
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=74.28 E-value=1.9 Score=28.58 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=5.1
Q ss_pred CCCEEEccCCCCCC
Q 001271 259 SLEGLDISYNIIST 272 (1111)
Q Consensus 259 sL~~LdLS~N~Is~ 272 (1111)
+|+.|+|++|+|+.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
No 80
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=67.00 E-value=4 Score=58.02 Aligned_cols=37 Identities=43% Similarity=0.484 Sum_probs=28.4
Q ss_pred EccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 001271 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (1111)
Q Consensus 264 dLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~ 301 (1111)
||++|+|+.++. ..|..+++|+.|+|++||+.|.|.+
T Consensus 1 DLSnN~LstLp~-g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEE-GICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccCh-HHhccCCCceEEEeeCCcccccccc
Confidence 577788888776 6777778888888888888887754
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=65.76 E-value=5 Score=28.86 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=12.8
Q ss_pred CCccEEEccCCccccchhh
Q 001271 168 NRLSFVSCSCNRLVIMDES 186 (1111)
Q Consensus 168 ~~L~~L~Ls~N~LssLP~~ 186 (1111)
++|+.|+|++|+|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4667777777777777654
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=65.76 E-value=5 Score=28.86 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=12.8
Q ss_pred CCccEEEccCCccccchhh
Q 001271 168 NRLSFVSCSCNRLVIMDES 186 (1111)
Q Consensus 168 ~~L~~L~Ls~N~LssLP~~ 186 (1111)
++|+.|+|++|+|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4667777777777777654
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.63 E-value=1.2 Score=48.50 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=20.6
Q ss_pred CCcEEEccCCCCCC--CCCcCCCCCCcEEECCCC
Q 001271 192 AVETLDLSRNKFAK--VDNLRKCVNLKHLDLGFN 223 (1111)
Q Consensus 192 nL~~LdLS~N~Ls~--L~~L~~L~sL~~LdLS~N 223 (1111)
.++.++.++..|.. ++.+.+++.|+.|.+.++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 35667777766654 356666667776666665
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=62.60 E-value=7 Score=28.07 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=12.9
Q ss_pred CCCCCEEEccCCCCCCCch
Q 001271 257 LKSLEGLDISYNIISTFSE 275 (1111)
Q Consensus 257 L~sL~~LdLS~N~Is~l~~ 275 (1111)
+++|+.|+|++|.|+.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3567777777777777764
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=62.60 E-value=7 Score=28.07 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=12.9
Q ss_pred CCCCCEEEccCCCCCCCch
Q 001271 257 LKSLEGLDISYNIISTFSE 275 (1111)
Q Consensus 257 L~sL~~LdLS~N~Is~l~~ 275 (1111)
+++|+.|+|++|.|+.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3567777777777777764
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=61.85 E-value=3.2 Score=29.35 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=13.5
Q ss_pred CCCCCEEEeeCCCCCccchhhH
Q 001271 110 FCRLKVLELRGCDLSTSAAKGL 131 (1111)
Q Consensus 110 L~nL~~LdLS~N~Ls~~~P~~L 131 (1111)
+++|++|+|++|.|+...+..|
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3678888888888876544444
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.77 E-value=5.7 Score=48.77 Aligned_cols=76 Identities=20% Similarity=0.178 Sum_probs=53.9
Q ss_pred CCCCCCCEEEccCCCCCCCchhhhhc-CCCCCcEEEecCC--CCCCCccchhhHhhhcCCCCeeecCCCcCChhHHHHHH
Q 001271 255 ENLKSLEGLDISYNIISTFSELEFLA-SLPYLLNLWLEGN--PLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQ 331 (1111)
Q Consensus 255 ~~L~sL~~LdLS~N~Is~l~~l~~L~-~L~~L~~L~LsgN--pLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E~~~~~ 331 (1111)
.+.+.+..|+|++|+|..+..+..+. ..|+|+.|+|++| .+....+... + ....|+.+.|+|||+...=...++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~-k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--L-KGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--h-cCCCHHHeeecCCccccchhhhHH
Confidence 45678999999999999887665543 4689999999999 5544333322 1 234578899999999765554444
Q ss_pred HH
Q 001271 332 LI 333 (1111)
Q Consensus 332 ~l 333 (1111)
.+
T Consensus 292 yv 293 (585)
T KOG3763|consen 292 YV 293 (585)
T ss_pred HH
Confidence 44
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=56.35 E-value=9.2 Score=28.37 Aligned_cols=17 Identities=47% Similarity=0.747 Sum_probs=8.3
Q ss_pred CCCcEEEccCCCCCCCC
Q 001271 191 PAVETLDLSRNKFAKVD 207 (1111)
Q Consensus 191 ~nL~~LdLS~N~Ls~L~ 207 (1111)
.+|+.|+|++|+|+.++
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 34455555555554443
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=46.48 E-value=15 Score=27.23 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=10.6
Q ss_pred CCCcEEECCCCCCCCccc
Q 001271 213 VNLKHLDLGFNNLRSIAA 230 (1111)
Q Consensus 213 ~sL~~LdLS~N~Lt~L~~ 230 (1111)
.+|+.|+|++|+|+.+..
T Consensus 2 ~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 2 TNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CccCEEECCCCccceecC
Confidence 456666666666655543
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.99 E-value=15 Score=40.16 Aligned_cols=78 Identities=22% Similarity=0.147 Sum_probs=48.3
Q ss_pred ccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCC-CccCC-CCCCCCEEEeeCC-CCCccchhhHhhhhhhhhhhh
Q 001271 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPT-PLSLL-PFCRLKVLELRGC-DLSTSAAKGLLELRHTLEKII 142 (1111)
Q Consensus 66 ~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~i-P~sLs-~L~nL~~LdLS~N-~Ls~~~P~~L~~L~~LleLlL 142 (1111)
...|-+++....+=-+.+.+++.|+.|.+.++.--+.. -..++ ..++|+.|+|++| +||......+..+++|..+.+
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 34455554444433456778888888888777632211 01111 3489999999988 577655666777777666654
Q ss_pred c
Q 001271 143 C 143 (1111)
Q Consensus 143 s 143 (1111)
.
T Consensus 184 ~ 184 (221)
T KOG3864|consen 184 Y 184 (221)
T ss_pred c
Confidence 3
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=36.80 E-value=19 Score=26.89 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=11.3
Q ss_pred CccEEEccCCccccchh
Q 001271 169 RLSFVSCSCNRLVIMDE 185 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssLP~ 185 (1111)
+|+.|++++|+|+.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56667777777766664
No 92
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=35.90 E-value=59 Score=30.93 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=53.2
Q ss_pred cceEEEEEecCCcccceEEEEEeecCCeeEEEEEeeeecCCcccc--cccccccchhhHHHhhhc--cceEEEEEeecC
Q 001271 827 QYTVCWILEQDFMHRGREVAVLRSSENKFYVLLFGVTVDGTGSIL--NLLGCHKIEDIREVLIGL--GLQVLRVSTEMG 901 (1111)
Q Consensus 827 ~~~~~~~~~~~~~~~~~e~~~l~ss~~k~~~ll~~~~~d~~~~~~--~~l~~~~~~~~~~v~~g~--glq~~r~~~~~~ 901 (1111)
+-|+||.|-..-+.+. .| -.-.++-+||=|++-. =.|-|+ +=|.--|++.+++.+||= =-||+||-=+-|
T Consensus 6 ~lafcy~~P~v~dvv~-~V--v~i~d~~~YV~LleY~--iegmIl~~selsr~rirsi~kllVGk~e~v~ViRVDk~KG 79 (86)
T PHA02858 6 DLAFCYVFPNINEVTK-GI--VFVKDNIFYVKLIDYG--LEALIVNYVNVNADRAEKLKKKLVGKTINVQVIRTDKLKG 79 (86)
T ss_pred eeEEEEecCCCCeEEE-EE--EEEeccEEEEEEecCc--cceEEecHHHHhHHHHHhhhhhhcCCeeEEEEEEECCCCC
Confidence 5689999998888886 44 4567899999999985 444454 567788999999999773 468888865444
No 93
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=34.16 E-value=39 Score=33.46 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=23.6
Q ss_pred EEEEEeecCcEEEEEeccHHHHHHHhhhee
Q 001271 893 VLRVSTEMGATYLLMTRSIEKSRQLFCTLQ 922 (1111)
Q Consensus 893 ~~r~~~~~~~~~~~~t~~~~~~~~~~~~~~ 922 (1111)
|.||...+|..|||-|.+.++..+=+..|+
T Consensus 86 VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN 115 (119)
T PF15410_consen 86 VFRLRTADGSEYLFQASDEEEMNEWIDAIN 115 (119)
T ss_dssp EEEEE-TTS-EEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEECCCHHHHHHHHHHHh
Confidence 789999999999999999999888666554
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=31.05 E-value=36 Score=25.31 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=12.7
Q ss_pred CCCCEEEeeCCCCCcc
Q 001271 111 CRLKVLELRGCDLSTS 126 (1111)
Q Consensus 111 ~nL~~LdLS~N~Ls~~ 126 (1111)
++|++|||++|.|...
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 5788899999988753
Done!