Query 001271
Match_columns 1111
No_of_seqs 615 out of 3390
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 19:36:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o6n_A APL1; leucine-rich repe 99.9 4E-24 1.4E-28 242.1 18.5 292 25-326 44-355 (390)
2 3v47_A TOLL-like receptor 5B a 99.9 2.7E-24 9.2E-29 247.1 16.6 299 24-326 28-411 (455)
3 4fmz_A Internalin; leucine ric 99.9 5.1E-23 1.8E-27 228.5 24.5 275 25-324 43-325 (347)
4 2id5_A Lingo-1, leucine rich r 99.9 6.7E-24 2.3E-28 246.3 17.6 278 22-326 28-336 (477)
5 3oja_B Anopheles plasmodium-re 99.9 8.9E-24 3E-28 253.8 18.8 292 25-326 50-361 (597)
6 3zyi_A Leucine-rich repeat-con 99.9 1.1E-23 3.8E-28 243.9 17.7 223 68-300 80-307 (452)
7 3zyj_A Leucine-rich repeat-con 99.9 1.2E-23 4E-28 243.0 17.0 223 68-300 69-296 (440)
8 2id5_A Lingo-1, leucine rich r 99.9 4.4E-23 1.5E-27 239.4 19.3 268 24-301 54-338 (477)
9 1xku_A Decorin; proteoglycan, 99.9 7.9E-23 2.7E-27 226.4 20.4 267 27-324 32-307 (330)
10 4fmz_A Internalin; leucine ric 99.9 2E-22 7E-27 223.7 23.4 235 67-327 70-304 (347)
11 3v47_A TOLL-like receptor 5B a 99.9 4.9E-23 1.7E-27 236.6 18.5 275 25-300 53-412 (455)
12 4eco_A Uncharacterized protein 99.9 1.2E-23 4E-28 255.2 13.8 237 79-323 198-470 (636)
13 3o6n_A APL1; leucine-rich repe 99.9 9.7E-23 3.3E-27 230.8 20.1 202 82-296 64-285 (390)
14 3rgz_A Protein brassinosteroid 99.9 4E-23 1.4E-27 255.4 16.6 246 65-324 396-718 (768)
15 4eco_A Uncharacterized protein 99.9 3.4E-23 1.2E-27 251.1 15.5 244 66-324 209-502 (636)
16 3t6q_A CD180 antigen; protein- 99.9 2.1E-22 7.1E-27 240.0 21.0 247 67-327 305-564 (606)
17 1o6v_A Internalin A; bacterial 99.9 2.8E-22 9.7E-27 233.1 21.3 270 25-325 45-324 (466)
18 2ft3_A Biglycan; proteoglycan, 99.9 9.6E-23 3.3E-27 226.2 16.1 262 27-323 34-307 (332)
19 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-23 7.8E-28 230.8 10.5 241 64-322 51-303 (313)
20 4ecn_A Leucine-rich repeat pro 99.9 2.3E-22 7.9E-27 252.5 20.6 239 78-323 439-710 (876)
21 3t6q_A CD180 antigen; protein- 99.9 2.3E-22 7.9E-27 239.7 18.7 152 169-323 255-413 (606)
22 1xku_A Decorin; proteoglycan, 99.9 5.4E-22 1.8E-26 219.7 20.1 218 87-323 52-276 (330)
23 1o6v_A Internalin A; bacterial 99.9 7.4E-22 2.5E-26 229.6 22.1 262 24-325 66-346 (466)
24 3oja_B Anopheles plasmodium-re 99.9 3.6E-22 1.2E-26 239.8 19.9 228 82-325 70-339 (597)
25 2z7x_B TOLL-like receptor 1, v 99.9 5.7E-22 1.9E-26 232.3 20.3 157 165-328 321-486 (520)
26 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-21 3.9E-26 237.2 22.8 240 82-325 324-624 (680)
27 3zyi_A Leucine-rich repeat-con 99.9 2.6E-22 8.8E-27 232.6 16.4 238 74-327 64-307 (452)
28 3zyj_A Leucine-rich repeat-con 99.9 2.9E-22 9.8E-27 231.4 16.7 238 74-327 53-296 (440)
29 2z81_A CD282 antigen, TOLL-lik 99.9 2.4E-22 8.2E-27 236.4 16.2 155 167-327 333-514 (549)
30 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-23 4.5E-28 232.7 4.6 243 27-297 51-305 (313)
31 4ecn_A Leucine-rich repeat pro 99.9 2.5E-22 8.6E-27 252.1 16.5 262 36-323 435-741 (876)
32 3rgz_A Protein brassinosteroid 99.9 2.9E-22 9.8E-27 247.7 15.2 222 66-298 421-719 (768)
33 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-21 3.9E-26 212.7 18.1 207 86-302 31-244 (285)
34 2z66_A Variable lymphocyte rec 99.9 1.2E-22 4.2E-27 222.2 10.2 225 87-325 28-263 (306)
35 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-22 9.4E-27 222.0 13.1 235 68-326 15-253 (317)
36 3vq2_A TLR4, TOLL-like recepto 99.9 5.7E-22 2E-26 236.3 16.4 296 24-323 30-461 (606)
37 2ft3_A Biglycan; proteoglycan, 99.9 6E-22 2E-26 219.9 15.3 236 67-325 37-279 (332)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.2E-21 1.4E-25 228.1 23.3 158 165-328 350-515 (562)
39 1ziw_A TOLL-like receptor 3; i 99.9 9E-22 3.1E-26 238.0 16.5 269 24-300 327-626 (680)
40 2z81_A CD282 antigen, TOLL-lik 99.9 2.7E-21 9.1E-26 227.5 19.8 289 24-323 24-464 (549)
41 2z80_A TOLL-like receptor 2, v 99.9 4.1E-22 1.4E-26 223.0 11.8 272 29-327 34-318 (353)
42 2z66_A Variable lymphocyte rec 99.9 1.7E-21 5.8E-26 213.2 16.0 247 29-302 10-267 (306)
43 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-21 3.7E-26 233.9 15.4 267 25-326 284-561 (606)
44 2z7x_B TOLL-like receptor 1, v 99.9 4.8E-21 1.7E-25 224.4 19.9 86 210-296 321-412 (520)
45 1wwl_A Monocyte differentiatio 99.9 6.1E-22 2.1E-26 218.8 11.4 243 27-324 44-310 (312)
46 2z63_A TOLL-like receptor 4, v 99.9 2.1E-21 7.1E-26 228.8 14.8 154 166-323 280-458 (570)
47 1p9a_G Platelet glycoprotein I 99.9 1.5E-20 5E-25 206.8 20.1 202 83-300 6-212 (290)
48 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-22 9.6E-27 221.9 6.4 211 66-298 37-252 (317)
49 1ozn_A Reticulon 4 receptor; N 99.8 1.5E-20 5.3E-25 203.9 19.2 222 90-327 14-242 (285)
50 4fcg_A Uncharacterized protein 99.8 8E-21 2.7E-25 212.2 17.3 225 85-325 79-316 (328)
51 3oja_A Leucine-rich immune mol 99.8 3E-21 1E-25 227.2 14.2 217 86-326 33-253 (487)
52 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-20 4.1E-25 235.6 20.3 291 24-323 22-394 (844)
53 4fcg_A Uncharacterized protein 99.8 3E-21 1E-25 215.6 12.8 226 67-298 85-316 (328)
54 2z63_A TOLL-like receptor 4, v 99.8 8.9E-21 3E-25 223.4 17.5 297 24-325 50-533 (570)
55 1h6u_A Internalin H; cell adhe 99.8 1.2E-20 4E-25 208.9 15.4 218 84-323 38-255 (308)
56 2z80_A TOLL-like receptor 2, v 99.8 2.3E-21 8E-26 216.9 9.8 240 75-325 42-292 (353)
57 3oja_A Leucine-rich immune mol 99.8 1.8E-21 6.2E-26 229.1 9.0 236 31-298 12-252 (487)
58 2o6q_A Variable lymphocyte rec 99.8 6.8E-20 2.3E-24 198.1 20.2 134 166-300 83-222 (270)
59 2z62_A TOLL-like receptor 4, v 99.8 2.7E-20 9.4E-25 201.0 16.6 204 87-300 28-241 (276)
60 4g8a_A TOLL-like receptor 4; l 99.8 6.8E-20 2.3E-24 217.0 21.6 115 209-327 465-584 (635)
61 3j0a_A TOLL-like receptor 5; m 99.8 7.3E-20 2.5E-24 228.5 21.0 288 24-324 46-415 (844)
62 3bz5_A Internalin-J, INLJ; leu 99.8 1.6E-19 5.4E-24 211.1 21.8 252 25-322 41-298 (457)
63 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.8E-20 2.7E-24 217.2 19.4 115 28-147 33-158 (562)
64 3g06_A SSPH2 (leucine-rich rep 99.8 1.8E-19 6.3E-24 218.9 21.8 258 25-331 39-305 (622)
65 1wwl_A Monocyte differentiatio 99.8 7.7E-22 2.6E-26 218.0 0.9 154 166-325 119-289 (312)
66 1jl5_A Outer protein YOPM; leu 99.8 4.3E-20 1.5E-24 215.8 14.9 259 25-324 10-291 (454)
67 3bz5_A Internalin-J, INLJ; leu 99.8 3.8E-19 1.3E-23 208.0 22.4 263 24-324 62-353 (457)
68 2ca6_A RAN GTPase-activating p 99.8 4.2E-21 1.4E-25 217.4 4.7 226 68-326 37-319 (386)
69 1jl5_A Outer protein YOPM; leu 99.8 4.1E-19 1.4E-23 207.5 20.8 220 66-324 134-371 (454)
70 4g8a_A TOLL-like receptor 4; l 99.8 3.9E-19 1.3E-23 210.5 18.9 86 235-324 468-556 (635)
71 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-18 4.4E-23 211.5 20.5 223 67-324 44-275 (622)
72 2z62_A TOLL-like receptor 4, v 99.8 2.6E-19 9E-24 193.3 12.5 219 30-273 11-239 (276)
73 2xwt_C Thyrotropin receptor; s 99.8 2.7E-19 9.1E-24 189.5 12.0 201 76-293 23-236 (239)
74 4glp_A Monocyte differentiatio 99.8 2.5E-19 8.5E-24 197.5 10.9 202 85-324 89-308 (310)
75 1h6t_A Internalin B; cell adhe 99.8 1.2E-18 4E-23 191.5 15.4 198 84-325 43-240 (291)
76 3m19_A Variable lymphocyte rec 99.8 4.7E-18 1.6E-22 181.7 18.6 175 87-298 14-194 (251)
77 1h6u_A Internalin H; cell adhe 99.8 2.3E-18 7.8E-23 190.5 15.6 207 93-324 25-231 (308)
78 2ca6_A RAN GTPase-activating p 99.8 4.1E-19 1.4E-23 201.1 8.9 223 76-326 21-290 (386)
79 1p9a_G Platelet glycoprotein I 99.8 6E-18 2.1E-22 186.0 17.3 203 106-326 5-211 (290)
80 3rfs_A Internalin B, repeat mo 99.8 9.1E-18 3.1E-22 181.9 18.3 179 83-299 37-221 (272)
81 2o6q_A Variable lymphocyte rec 99.8 6.6E-18 2.3E-22 182.5 17.0 178 87-273 37-220 (270)
82 1z7x_W Ribonuclease inhibitor; 99.8 5.5E-19 1.9E-23 203.0 8.0 165 25-204 55-240 (461)
83 1z7x_W Ribonuclease inhibitor; 99.8 3.8E-19 1.3E-23 204.4 6.5 281 25-326 27-357 (461)
84 4glp_A Monocyte differentiatio 99.8 6.5E-19 2.2E-23 194.1 7.9 195 66-297 94-308 (310)
85 3goz_A Leucine-rich repeat-con 99.7 1.3E-18 4.4E-23 196.1 8.4 256 69-330 4-304 (362)
86 1m9s_A Internalin B; cell inva 99.7 1.4E-17 4.7E-22 201.8 15.0 176 83-300 39-214 (605)
87 2xwt_C Thyrotropin receptor; s 99.7 2E-17 6.7E-22 175.2 13.8 201 99-320 23-236 (239)
88 3goz_A Leucine-rich repeat-con 99.7 3.4E-18 1.2E-22 192.7 8.1 250 30-298 2-299 (362)
89 3cvr_A Invasion plasmid antige 99.7 3.1E-17 1.1E-21 197.5 16.1 179 87-297 59-244 (571)
90 3m19_A Variable lymphocyte rec 99.7 1E-16 3.5E-21 171.4 15.3 154 87-273 35-194 (251)
91 1dce_A Protein (RAB geranylger 99.7 2.3E-19 7.8E-24 215.7 -6.2 198 108-317 346-567 (567)
92 1xeu_A Internalin C; cellular 99.7 8.2E-18 2.8E-22 182.4 6.5 171 86-299 18-188 (263)
93 3rfs_A Internalin B, repeat mo 99.7 3.2E-16 1.1E-20 169.8 18.6 195 89-325 21-220 (272)
94 2ast_B S-phase kinase-associat 99.7 2.6E-17 8.9E-22 181.5 8.0 238 67-324 51-307 (336)
95 1h6t_A Internalin B; cell adhe 99.7 2E-16 6.8E-21 173.8 14.5 186 92-324 29-214 (291)
96 2xot_A Amphoterin-induced prot 99.7 1.5E-16 5E-21 179.7 12.0 177 90-302 21-208 (361)
97 4ay9_X Follicle-stimulating ho 99.7 2E-16 6.8E-21 177.6 12.4 224 76-319 21-255 (350)
98 1xeu_A Internalin C; cellular 99.6 4.9E-16 1.7E-20 168.4 12.9 171 133-325 17-187 (263)
99 3e6j_A Variable lymphocyte rec 99.6 1.2E-15 4E-20 161.8 14.6 132 168-300 40-176 (229)
100 4ay9_X Follicle-stimulating ho 99.6 2.8E-16 9.5E-21 176.4 9.5 236 29-294 12-257 (350)
101 2v9t_B SLIT homolog 2 protein 99.6 2.6E-15 8.9E-20 158.4 16.2 131 170-301 34-170 (220)
102 3cvr_A Invasion plasmid antige 99.6 2.7E-15 9.2E-20 180.7 17.8 184 112-330 60-250 (571)
103 1m9s_A Internalin B; cell inva 99.6 1.5E-15 5E-20 184.1 15.4 190 89-325 23-212 (605)
104 2ast_B S-phase kinase-associat 99.6 1.5E-16 5.2E-21 175.4 4.3 240 28-298 49-308 (336)
105 4ezg_A Putative uncharacterize 99.6 2.2E-15 7.6E-20 155.5 12.3 124 169-296 67-194 (197)
106 2v70_A SLIT-2, SLIT homolog 2 99.6 3.8E-15 1.3E-19 157.1 13.2 132 169-301 33-171 (220)
107 4ezg_A Putative uncharacterize 99.6 2.6E-15 8.9E-20 155.0 11.1 149 167-324 43-195 (197)
108 1dce_A Protein (RAB geranylger 99.6 2.8E-17 9.7E-22 197.6 -6.1 200 84-290 346-567 (567)
109 3e6j_A Variable lymphocyte rec 99.6 1.9E-14 6.5E-19 152.5 16.1 150 89-274 21-175 (229)
110 2v9t_B SLIT homolog 2 protein 99.6 1.6E-14 5.4E-19 152.4 14.0 151 171-327 14-169 (220)
111 2o6s_A Variable lymphocyte rec 99.6 9.3E-15 3.2E-19 151.4 11.9 147 87-271 28-178 (208)
112 2xot_A Amphoterin-induced prot 99.6 1.4E-14 4.7E-19 163.5 13.7 156 169-328 40-207 (361)
113 3ogk_B Coronatine-insensitive 99.5 6.6E-15 2.3E-19 174.5 9.7 157 167-325 341-528 (592)
114 2v70_A SLIT-2, SLIT homolog 2 99.5 2.8E-14 9.5E-19 150.5 12.9 152 170-327 13-170 (220)
115 2o6s_A Variable lymphocyte rec 99.5 8.7E-14 3E-18 144.1 15.6 130 168-298 28-163 (208)
116 1ds9_A Outer arm dynein; leuci 99.5 2.1E-16 7.2E-21 163.3 -4.4 162 169-332 24-194 (198)
117 2ell_A Acidic leucine-rich nuc 99.5 3.4E-14 1.2E-18 142.3 9.7 132 167-298 23-162 (168)
118 3ogk_B Coronatine-insensitive 99.5 9.2E-15 3.1E-19 173.2 6.3 283 26-322 220-550 (592)
119 4b8c_D Glucose-repressible alc 99.5 1.3E-14 4.5E-19 179.1 6.8 219 28-296 175-404 (727)
120 2wfh_A SLIT homolog 2 protein 99.5 1.2E-13 4E-18 143.2 12.8 128 171-301 13-144 (193)
121 1w8a_A SLIT protein; signaling 99.5 1.2E-13 4E-18 142.5 12.3 129 170-301 10-144 (192)
122 1a9n_A U2A', U2A'; complex (nu 99.5 6.2E-14 2.1E-18 142.1 8.6 132 190-322 18-152 (176)
123 2je0_A Acidic leucine-rich nuc 99.4 1E-13 3.5E-18 136.1 8.6 124 168-291 17-148 (149)
124 1a9n_A U2A', U2A'; complex (nu 99.4 1.2E-13 4.2E-18 139.9 7.1 131 166-296 17-153 (176)
125 2o6r_A Variable lymphocyte rec 99.4 9.9E-13 3.4E-17 132.9 13.8 128 169-299 8-140 (177)
126 2p1m_B Transport inhibitor res 99.4 4.9E-14 1.7E-18 166.8 4.5 205 110-326 288-522 (594)
127 2ell_A Acidic leucine-rich nuc 99.4 3.4E-13 1.2E-17 135.0 9.1 136 188-324 21-161 (168)
128 2p1m_B Transport inhibitor res 99.4 2E-13 6.8E-18 161.6 7.6 254 67-324 134-470 (594)
129 2je0_A Acidic leucine-rich nuc 99.3 1.1E-12 3.9E-17 128.6 8.5 129 189-318 15-148 (149)
130 1ds9_A Outer arm dynein; leuci 99.3 6.7E-15 2.3E-19 152.0 -8.6 156 83-298 14-187 (198)
131 4b8c_D Glucose-repressible alc 99.3 1.6E-12 5.6E-17 160.5 9.4 131 166-297 222-355 (727)
132 2wfh_A SLIT homolog 2 protein 99.3 1E-11 3.4E-16 128.7 11.6 112 168-279 31-147 (193)
133 1w8a_A SLIT protein; signaling 99.3 1.4E-11 4.7E-16 127.0 12.5 128 90-274 11-142 (192)
134 3sb4_A Hypothetical leucine ri 99.2 4.1E-12 1.4E-16 141.2 6.0 97 190-289 225-327 (329)
135 2o6r_A Variable lymphocyte rec 99.2 5.6E-11 1.9E-15 120.1 13.5 87 188-274 49-140 (177)
136 3g39_A Variable lymphocyte rec 99.2 6.4E-11 2.2E-15 120.0 12.7 105 170-300 11-119 (170)
137 3sb4_A Hypothetical leucine ri 99.2 8.2E-11 2.8E-15 130.7 11.3 211 86-316 48-327 (329)
138 2r9u_A Variable lymphocyte rec 99.1 1.7E-10 5.9E-15 117.5 11.9 104 171-300 15-122 (174)
139 2r9u_A Variable lymphocyte rec 99.1 4.2E-10 1.4E-14 114.7 11.7 104 138-274 15-121 (174)
140 3un9_A NLR family member X1; l 99.0 4.6E-11 1.6E-15 136.4 2.2 110 169-296 127-252 (372)
141 3g39_A Variable lymphocyte rec 99.0 1E-09 3.5E-14 111.2 11.5 105 89-229 11-118 (170)
142 3un9_A NLR family member X1; l 99.0 2.6E-11 9E-16 138.5 -1.5 166 86-273 71-254 (372)
143 2ifg_A High affinity nerve gro 99.0 9.6E-10 3.3E-14 122.3 9.5 106 172-301 12-121 (347)
144 4fdw_A Leucine rich hypothetic 99.0 3.6E-09 1.2E-13 122.0 14.5 122 167-295 225-357 (401)
145 2ifg_A High affinity nerve gro 99.0 6.5E-10 2.2E-14 123.7 7.6 85 164-248 27-115 (347)
146 4fdw_A Leucine rich hypothetic 98.9 7.5E-09 2.6E-13 119.4 13.2 218 82-324 131-359 (401)
147 2ra8_A Uncharacterized protein 98.4 4.9E-07 1.7E-11 103.1 9.4 156 78-269 163-341 (362)
148 3rw6_A Nuclear RNA export fact 98.3 1.2E-07 4.1E-12 104.1 2.0 113 209-324 137-263 (267)
149 2ra8_A Uncharacterized protein 98.3 3.1E-07 1.1E-11 104.8 4.7 14 83-96 135-148 (362)
150 1io0_A Tropomodulin; LRR prote 98.3 5E-07 1.7E-11 92.9 4.7 121 77-226 26-164 (185)
151 1io0_A Tropomodulin; LRR prote 98.1 2E-06 6.9E-11 88.4 5.3 60 168-227 65-137 (185)
152 4fs7_A Uncharacterized protein 97.9 4.2E-05 1.5E-09 86.9 12.7 192 82-292 157-352 (394)
153 4gt6_A Cell surface protein; l 97.9 0.00025 8.7E-09 80.5 17.2 105 209-321 261-368 (394)
154 4fs7_A Uncharacterized protein 97.8 0.0002 7E-09 81.3 14.4 228 82-320 66-353 (394)
155 3rw6_A Nuclear RNA export fact 97.7 2.1E-05 7.1E-10 86.4 4.0 91 173-264 148-257 (267)
156 4gt6_A Cell surface protein; l 97.6 0.00057 1.9E-08 77.6 14.8 130 180-320 253-388 (394)
157 4h09_A Hypothetical leucine ri 97.1 0.0074 2.5E-07 67.7 16.2 125 187-319 213-342 (379)
158 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00045 1.5E-08 72.6 5.8 120 78-226 32-170 (197)
159 3e4g_A ATP synthase subunit S, 96.8 0.00044 1.5E-08 71.5 2.3 36 191-226 61-99 (176)
160 3rfe_A Platelet glycoprotein I 96.8 0.002 6.7E-08 62.9 6.9 62 239-302 11-74 (130)
161 3e4g_A ATP synthase subunit S, 96.7 0.001 3.4E-08 68.8 4.3 39 87-125 61-100 (176)
162 4h09_A Hypothetical leucine ri 96.7 0.01 3.6E-07 66.4 12.8 124 165-293 214-343 (379)
163 1pgv_A TMD-1, tropomodulin TMD 96.5 0.0023 7.9E-08 67.2 6.0 109 186-294 36-168 (197)
164 3rfe_A Platelet glycoprotein I 95.6 0.014 4.9E-07 56.8 5.9 54 171-226 11-68 (130)
165 4fxw_B Splicing factor 1; UHM, 43.6 12 0.00042 36.4 2.8 30 595-624 72-115 (124)
No 1
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=4e-24 Score=242.14 Aligned_cols=292 Identities=14% Similarity=0.135 Sum_probs=222.9
Q ss_pred ccCCcEEEecCCCccchHHhh-hhcccchhhccCC-Cccc---------cccccccCCCCCcchhHHHHhcCCCCCcEEE
Q 001271 25 IEGSIVLKLNPAGLHYVQSRL-EALRELERLLAGA-PLDY---------LRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~~Lp~~L-~~L~~Le~L~~~~-~l~~---------Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~Ld 93 (1111)
+.+++.|++..+.+..+|..+ ..+++|+.+.... .+.. -.+..+++++|......|..+.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 577899999999999998764 6666666554321 1111 1234567777776555566788888888888
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhcccccc-------ccCCCC
Q 001271 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE-------IKDSPQ 166 (1111)
Q Consensus 94 Ls~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~-------L~~l~~ 166 (1111)
|++|.+....+..|..+++|++|+|++|.+++..|..+..+++|..+.+.+|.+..+.......+.. +..+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 8888888554455688888888888888888877777888888888888888776553211111110 111123
Q ss_pred CCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccC
Q 001271 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (1111)
Q Consensus 167 L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~ 245 (1111)
..+|+.|++++|.++.+|.. .+++|+.|+|++|.++.++.+..+++|+.|+|++|.|+.+.+ ....+++|+.|+|++
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp CSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred CCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence 45688888888888877653 357899999999999999889999999999999999998754 455689999999999
Q ss_pred CccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCCh
Q 001271 246 NALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 246 N~Lt~L~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~ 324 (1111)
|+++.++ .+..+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|++...+ +..++.|+.++|.+|++.+
T Consensus 282 n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 282 NRLVALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCCCCG--GGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEH
T ss_pred CcCcccCcccCCCCCCCEEECCCCcceecC--ccccccCcCCEEECCCCccceeC------chhhccCCEEEcCCCCccc
Confidence 9999985 5678999999999999999987 45778899999999999997553 4567889999999999988
Q ss_pred hH
Q 001271 325 RE 326 (1111)
Q Consensus 325 ~E 326 (1111)
..
T Consensus 354 ~~ 355 (390)
T 3o6n_A 354 NS 355 (390)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=2.7e-24 Score=247.11 Aligned_cols=299 Identities=20% Similarity=0.221 Sum_probs=225.0
Q ss_pred cccCCcEEEecCCCccch-HHhhhhcccchhhccCCC-c---------c-ccccccccCCCCCcchhHHHHhcCCCCCcE
Q 001271 24 LIEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGAP-L---------D-YLRAYVSDLGDHRALEQLRRILKLLTSLKV 91 (1111)
Q Consensus 24 lL~~lk~L~Ls~~~L~~L-p~~L~~L~~Le~L~~~~~-l---------~-~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~ 91 (1111)
+...++.|+|+.+.+..+ |..+..+.+|+.+..... . . .-.+..+++++|......|..|.++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 446789999999999987 556777777766544221 1 0 112346778888766666778888888888
Q ss_pred EEccCCCCCCCCCcc--CCCCCCCCEEEeeCCCCCccchhh-HhhhhhhhhhhhccCCCccchhhhcccc----------
Q 001271 92 VSALPPPARDPTPLS--LLPFCRLKVLELRGCDLSTSAAKG-LLELRHTLEKIICHNSTNALRHVFASRI---------- 158 (1111)
Q Consensus 92 LdLs~N~Is~~iP~s--Ls~L~nL~~LdLS~N~Ls~~~P~~-L~~L~~LleLlLs~N~L~sL~~l~~~~I---------- 158 (1111)
|+|++|.+++..|.. |..+++|++|+|++|.+++..|.. +..+++|..+.+.+|.+..+.......+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 888888887654444 888888888888888888876665 7788888888888887665432211111
Q ss_pred -----ccc----------cCCCCCCCccEEEccCCccc-cchhhhc----------------------------------
Q 001271 159 -----VEI----------KDSPQWNRLSFVSCSCNRLV-IMDESLQ---------------------------------- 188 (1111)
Q Consensus 159 -----~~L----------~~l~~L~~L~~L~Ls~N~Ls-sLP~~L~---------------------------------- 188 (1111)
..+ ..+..+++|+.|++++|.++ .+|..+.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 010 11224468999999999886 3333221
Q ss_pred -----CCCCCcEEEccCCCCCCC--CCcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccCCccCCc--ccCCCCC
Q 001271 189 -----LLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL--RGIENLK 258 (1111)
Q Consensus 189 -----~L~nL~~LdLS~N~Ls~L--~~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~N~Lt~L--~~L~~L~ 258 (1111)
..++|+.|+|++|.+..+ ..+..+++|+.|+|++|.|+.+++ ....+++|+.|+|++|.|+.+ ..+..++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 125789999999998875 368899999999999999998765 455689999999999999887 3688999
Q ss_pred CCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChhH
Q 001271 259 SLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (1111)
Q Consensus 259 sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E 326 (1111)
+|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.++..+ ...+..++.|+.++|++|++.+..
T Consensus 348 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cCCEEECCCCcccccCh-hhccccccccEEECCCCccccCC---HhHhccCCcccEEEccCCCcccCC
Confidence 99999999999998865 67899999999999999998653 345677889999999999998764
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=5.1e-23 Score=228.50 Aligned_cols=275 Identities=17% Similarity=0.216 Sum_probs=158.1
Q ss_pred ccCCcEEEecCCCccchHHhhhhcccchhhccCC-Cccc-------cccccccCCCCCcchhHHHHhcCCCCCcEEEccC
Q 001271 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-PLDY-------LRAYVSDLGDHRALEQLRRILKLLTSLKVVSALP 96 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~-~l~~-------Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~ 96 (1111)
+..++.|+++.+.+..++. +..+++|+.+.... .+.. -.+..+++++|.. ..++ .+..+++|++|+|++
T Consensus 43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i-~~~~-~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI-TDIS-ALQNLTNLRELYLNE 119 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEECTT
T ss_pred cccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc-cCch-HHcCCCcCCEEECcC
Confidence 5567888888888887764 66666665554321 1111 1123567777653 3344 578899999999999
Q ss_pred CCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEcc
Q 001271 97 PPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCS 176 (1111)
Q Consensus 97 N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls 176 (1111)
|.+.+. +. +..+++|++|++++|.....++ .+..+++|..+.+.+|.+..+.. +..+++|+.|+++
T Consensus 120 n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-----------~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 120 DNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-----------IANLTDLYSLSLN 185 (347)
T ss_dssp SCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-----------GGGCTTCSEEECT
T ss_pred CcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-----------hccCCCCCEEEcc
Confidence 998854 33 7888888899988886554333 47778888888888887655543 1123455555555
Q ss_pred CCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcccCCC
Q 001271 177 CNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIEN 256 (1111)
Q Consensus 177 ~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~ 256 (1111)
+|.+..++. +..+++|+.|++++|.+..++.+..+++|+.|++++|.++.+++ ...+++|+.|+|++|.++.++.+..
T Consensus 186 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 263 (347)
T 4fmz_A 186 YNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKD 263 (347)
T ss_dssp TSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTT
T ss_pred CCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHhc
Confidence 555555543 44555555555555555554445555555555555555555444 2234555555555555555544555
Q ss_pred CCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCCh
Q 001271 257 LKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 257 L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~ 324 (1111)
+++|+.|+|++|.|+.++ .+..+++|+.|+|++|++... ....+..++.|+.++|++|+++.
T Consensus 264 l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNE---DMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGG---GHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCcCCCc---ChhHhhccccCCEEEccCCcccc
Confidence 555555555555555542 234445555555555554321 12333444555555555555443
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=6.7e-24 Score=246.31 Aligned_cols=278 Identities=15% Similarity=0.152 Sum_probs=187.9
Q ss_pred CccccCCcEEEecCCCccchH-HhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCC
Q 001271 22 GPLIEGSIVLKLNPAGLHYVQ-SRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPAR 100 (1111)
Q Consensus 22 ~slL~~lk~L~Ls~~~L~~Lp-~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is 100 (1111)
..+...++.|+|+.+.+..++ ..+..+.+|+. ++|++|......|..|.++++|++|+|++|.+.
T Consensus 28 ~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~--------------L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 28 EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEE--------------LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp SCCCTTCSEEECCSSCCCEECTTTTTTCTTCCE--------------EECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCcEEECCCCccceECHhHccCCCCCCE--------------EECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 345567888999999888774 34555555443 445555544444566677777777777777776
Q ss_pred CCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcc
Q 001271 101 DPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRL 180 (1111)
Q Consensus 101 ~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~L 180 (1111)
...+..|..+++|++|+|++|.++...|..+..+++|..+.+.+|.+..+... .+..+++|+.|+|++|.+
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR---------AFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT---------SSTTCTTCCEEEEESCCC
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh---------hccCCCCCCEEECCCCcC
Confidence 55555566777777777777777766666666777777777777665544321 122344555555555555
Q ss_pred ccchh-hhcCCCCCcEEEccCCCCCCCC--CcCC------------------------CCCCcEEECCCCCCCCccc-cc
Q 001271 181 VIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRK------------------------CVNLKHLDLGFNNLRSIAA-FS 232 (1111)
Q Consensus 181 ssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~------------------------L~sL~~LdLS~N~Lt~L~~-l~ 232 (1111)
+.+|. .+..+++|+.|+|++|.+..++ .+.. ..+|+.|+|++|.|+.++. ..
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence 55443 3555555555555555554432 2333 3366677777777777764 34
Q ss_pred cccccceEeeccCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcC
Q 001271 233 EVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA 310 (1111)
Q Consensus 233 ~~L~sL~~L~LS~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~ 310 (1111)
..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.+.+ ..+..+++|+.|+|++|.++..+ ...|..++
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~ 320 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-YAFRGLNYLRVLNVSGNQLTTLE---ESVFHSVG 320 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT-TTBTTCTTCCEEECCSSCCSCCC---GGGBSCGG
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH-HHhcCcccCCEEECCCCcCceeC---HhHcCCCc
Confidence 45788999999999988874 58888999999999999988765 67888999999999999987543 34566778
Q ss_pred CCCeeecCCCcCChhH
Q 001271 311 HPAKLKVDGKEISTRE 326 (1111)
Q Consensus 311 ~L~~L~LdgN~It~~E 326 (1111)
.|+.++|++|++.+..
T Consensus 321 ~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 321 NLETLILDSNPLACDC 336 (477)
T ss_dssp GCCEEECCSSCEECSG
T ss_pred ccCEEEccCCCccCcc
Confidence 8999999999987654
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=8.9e-24 Score=253.84 Aligned_cols=292 Identities=14% Similarity=0.135 Sum_probs=227.3
Q ss_pred ccCCcEEEecCCCccchHHhh-hhcccchhhccCC-Cccc---------cccccccCCCCCcchhHHHHhcCCCCCcEEE
Q 001271 25 IEGSIVLKLNPAGLHYVQSRL-EALRELERLLAGA-PLDY---------LRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~~Lp~~L-~~L~~Le~L~~~~-~l~~---------Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~Ld 93 (1111)
+.+++.|++..+.+..+|..+ ..+.+|+.+.... .+.. -.+..++|++|...+..|..|.++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 567889999999999888664 5566665543321 1111 1234677888876665566788899999999
Q ss_pred ccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhcccccc-------ccCCCC
Q 001271 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE-------IKDSPQ 166 (1111)
Q Consensus 94 Ls~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~-------L~~l~~ 166 (1111)
|++|.|+...+..|..+++|++|+|++|.+++..|..|..+++|..+.+.+|.+..++......+.. +..++.
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 9999998666666788999999999999998888888888888988889988876654221111110 111233
Q ss_pred CCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccC
Q 001271 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (1111)
Q Consensus 167 L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~ 245 (1111)
..+|+.|++++|.++.+|..+ .++|+.|+|++|.++.++.+..+++|+.|+|++|.|+++.+ .+..+++|+.|+|++
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred CchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 457888888888888776543 46899999999999999889999999999999999998754 455689999999999
Q ss_pred CccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCCh
Q 001271 246 NALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 246 N~Lt~L~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~ 324 (1111)
|.|+.++ .+..+++|+.|+|++|.|+.+| ..+..+++|+.|+|++|++...+ +..++.|+.++|.+|++.+
T Consensus 288 N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 288 NRLVALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCCCCG--GGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCcccccCCCCcEEECCCCCCCccC--cccccCCCCCEEECCCCCCCCcC------hhhcCCCCEEEeeCCCCCC
Confidence 9999985 5667999999999999999988 46788999999999999997553 4567889999999999987
Q ss_pred hH
Q 001271 325 RE 326 (1111)
Q Consensus 325 ~E 326 (1111)
..
T Consensus 360 ~~ 361 (597)
T 3oja_B 360 NS 361 (597)
T ss_dssp HH
T ss_pred hh
Confidence 74
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1.1e-23 Score=243.94 Aligned_cols=223 Identities=19% Similarity=0.210 Sum_probs=122.9
Q ss_pred ccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCC
Q 001271 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST 147 (1111)
Q Consensus 68 LdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L 147 (1111)
++|++|+.....+..|.++++|+.|+|++|.|.+..|..|..+++|++|+|++|.|+...+..+..+++|..+.+.+|.+
T Consensus 80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 159 (452)
T 3zyi_A 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence 44555544443344555666666666666666555555566666666666666666554444455555555555655555
Q ss_pred ccchhhhccccccccCCCCCCCccEEEccC-Cccccchh-hhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCC
Q 001271 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNL 225 (1111)
Q Consensus 148 ~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~-N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~L 225 (1111)
..++... +..+++|+.|+|++ |.+..++. .|..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.|
T Consensus 160 ~~~~~~~---------~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 160 ESIPSYA---------FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CEECTTT---------TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred ceeCHhH---------HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence 4433211 22345556666655 34444444 4555566666666666665555555556666666666665
Q ss_pred CCccc-cccccccceEeeccCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001271 226 RSIAA-FSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (1111)
Q Consensus 226 t~L~~-l~~~L~sL~~L~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~ 300 (1111)
+.+.+ .+..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|+|+.++. ..+..+++|+.|+|++||+.|.|.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH-DLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-TSSTTCTTCCEEECCSSCEECSTT
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh-HHhccccCCCEEEccCCCcCCCCC
Confidence 55433 233355566666666665554 245555566666666666655553 444555566666666666655543
No 7
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=243.01 Aligned_cols=223 Identities=20% Similarity=0.237 Sum_probs=117.7
Q ss_pred ccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCC
Q 001271 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST 147 (1111)
Q Consensus 68 LdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L 147 (1111)
++|++|+.....+..|.++++|++|+|++|.|....+..|..+++|++|+|++|.|+...+..|..+++|..+.+.+|.+
T Consensus 69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp EECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred EEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence 34444443333334555555566666655555555555555555666666666655554444455555555555555554
Q ss_pred ccchhhhccccccccCCCCCCCccEEEccC-Cccccchh-hhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCC
Q 001271 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNL 225 (1111)
Q Consensus 148 ~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~-N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~L 225 (1111)
..++... +..+++|+.|+|++ |.+..++. .|..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.|
T Consensus 149 ~~~~~~~---------~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 149 ESIPSYA---------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp CEECTTT---------TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred cccCHHH---------hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence 4433211 12344555555555 34444443 4555555555555555555555555555555555555555
Q ss_pred CCccc-cccccccceEeeccCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001271 226 RSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (1111)
Q Consensus 226 t~L~~-l~~~L~sL~~L~LS~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~ 300 (1111)
+.+++ .+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|+|+.++. ..+..+++|+.|+|++||+.|.|.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH-DLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT-TTTSSCTTCCEEECCSSCEECSST
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh-hHhccccCCCEEEcCCCCccCCCC
Confidence 55432 2333455555555555555542 45555555555555555555553 444555555555555555555543
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=4.4e-23 Score=239.39 Aligned_cols=268 Identities=20% Similarity=0.231 Sum_probs=208.3
Q ss_pred cccCCcEEEecCCCccch-HHhhhhcccchhhccCC-Ccc---------ccccccccCCCCCcchhHHHHhcCCCCCcEE
Q 001271 24 LIEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGA-PLD---------YLRAYVSDLGDHRALEQLRRILKLLTSLKVV 92 (1111)
Q Consensus 24 lL~~lk~L~Ls~~~L~~L-p~~L~~L~~Le~L~~~~-~l~---------~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~L 92 (1111)
-+..++.|+|+.+.+..+ |..+..+.+|+.+.... .+. .-.+..+++++|......+..|..+++|+.|
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 366789999999999877 55667776666654321 111 1123356677766655556677777778888
Q ss_pred EccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccE
Q 001271 93 SALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSF 172 (1111)
Q Consensus 93 dLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~ 172 (1111)
+|++|.+.+..|..|..+++|++|+|++|.+++..+..+..+++|..+.+.+|.+..+... .+..+++|+.
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~---------~~~~l~~L~~ 204 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY---------SFKRLYRLKV 204 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT---------CSCSCTTCCE
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh---------hcccCcccce
Confidence 8877777776777777777888888888877776666677777777777777766554432 2345678999
Q ss_pred EEccCCcc-ccchhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccCCcc
Q 001271 173 VSCSCNRL-VIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNAL 248 (1111)
Q Consensus 173 L~Ls~N~L-ssLP~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~N~L 248 (1111)
|++++|.+ ..+|..+....+|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|.|
T Consensus 205 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp EEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred eeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence 99998754 477776667779999999999999987 68899999999999999998876 345589999999999999
Q ss_pred CCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 001271 249 TTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (1111)
Q Consensus 249 t~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~ 301 (1111)
+.+ ..+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|++.|.+..
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEE-SVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp SEECTTTBTTCTTCCEEECCSSCCSCCCG-GGBSCGGGCCEEECCSSCEECSGGG
T ss_pred ceECHHHhcCcccCCEEECCCCcCceeCH-hHcCCCcccCEEEccCCCccCccch
Confidence 998 378899999999999999999986 6788999999999999999998754
No 9
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=7.9e-23 Score=226.41 Aligned_cols=267 Identities=17% Similarity=0.172 Sum_probs=176.9
Q ss_pred CCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCcc
Q 001271 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (1111)
Q Consensus 27 ~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~s 106 (1111)
.++.++++.+++..+|..+. .. +..+++++|+.....+..|.++++|++|+|++|.+++..|..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~--------------l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PD--------------TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TT--------------CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred CCeEEEecCCCccccCccCC--CC--------------CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence 46788888888888775432 11 123556666544433446788888888888888888777888
Q ss_pred CCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccc---cc
Q 001271 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV---IM 183 (1111)
Q Consensus 107 Ls~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Ls---sL 183 (1111)
|..+++|++|+|++|.++. +|..+. ++|..+.+.+|.+..+..... ..+++|+.|++++|.++ ..
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVF---------NGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp TTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHH---------TTCTTCCEEECCSSCCCGGGBC
T ss_pred hcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHh---------cCCccccEEECCCCcCCccCcC
Confidence 8888888888888888875 444333 566777777777665543221 23567777777777775 33
Q ss_pred hhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccCCccCCcc--cCCCCCCC
Q 001271 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (1111)
Q Consensus 184 P~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~N~Lt~L~--~L~~L~sL 260 (1111)
+..+..+++|+.|++++|.++.++... .++|+.|++++|.|+.+++ ....+++|+.|+|++|.++.++ .+..+++|
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred hhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 456777777777777777777765321 2677777777777776643 3445677777777777777763 46677777
Q ss_pred CEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchh---hHhhhcCCCCeeecCCCcCCh
Q 001271 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRA---QVFSYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 261 ~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~---~if~~l~~L~~L~LdgN~It~ 324 (1111)
+.|+|++|.|+.+| ..+..+++|+.|+|++|+|+..+.... ........+..++|.+|++..
T Consensus 243 ~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 243 RELHLNNNKLVKVP--GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CEEECCSSCCSSCC--TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CEEECCCCcCccCC--hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 77777777777776 456777777777777777765421110 000123456667777777754
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2e-22 Score=223.67 Aligned_cols=235 Identities=17% Similarity=0.224 Sum_probs=183.2
Q ss_pred cccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCC
Q 001271 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (1111)
Q Consensus 67 vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~ 146 (1111)
.+++++|.. ..++. +..+++|++|+|++|.+.. +| .|..+++|++|+|++|.++...+ +..+++|..+.+.+|.
T Consensus 70 ~L~l~~n~i-~~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~ 143 (347)
T 4fmz_A 70 YLNLNGNQI-TDISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANH 143 (347)
T ss_dssp EEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCT
T ss_pred EEEccCCcc-ccchh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCC
Confidence 455655543 23333 5666677777777666664 22 46666677777777776665332 5666666666666663
Q ss_pred CccchhhhccccccccCCCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCC
Q 001271 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLR 226 (1111)
Q Consensus 147 L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt 226 (1111)
.. ..+..+..+++|++|++++|.+..++. +..+++|+.|++++|.+..++.+..+++|+.|++++|.++
T Consensus 144 ~~----------~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 144 NL----------SDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp TC----------CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred Cc----------ccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCC
Confidence 11 112224567899999999999998865 8899999999999999999988999999999999999999
Q ss_pred CccccccccccceEeeccCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHh
Q 001271 227 SIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVF 306 (1111)
Q Consensus 227 ~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if 306 (1111)
.+++ ...+++|+.|+|++|.++.++.+..+++|+.|+|++|.++.++ .+..+++|+.|++++|.+... ..+
T Consensus 213 ~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~ 283 (347)
T 4fmz_A 213 DITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN---AVKDLTKLKMLNVGSNQISDI-----SVL 283 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCC-----GGG
T ss_pred CCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCCh---hHhcCCCcCEEEccCCccCCC-----hhh
Confidence 8877 4557999999999999999987999999999999999999874 578999999999999999864 246
Q ss_pred hhcCCCCeeecCCCcCChhHH
Q 001271 307 SYFAHPAKLKVDGKEISTREL 327 (1111)
Q Consensus 307 ~~l~~L~~L~LdgN~It~~E~ 327 (1111)
..++.|+.++|++|.++....
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGH
T ss_pred cCCCCCCEEECcCCcCCCcCh
Confidence 678999999999999986653
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=4.9e-23 Score=236.61 Aligned_cols=275 Identities=20% Similarity=0.229 Sum_probs=207.7
Q ss_pred ccCCcEEEecCCCcc-ch-HHhhhhcccchhhccCC-Cccc---------cccccccCCCCCcchhHHHH--hcCCCCCc
Q 001271 25 IEGSIVLKLNPAGLH-YV-QSRLEALRELERLLAGA-PLDY---------LRAYVSDLGDHRALEQLRRI--LKLLTSLK 90 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~-~L-p~~L~~L~~Le~L~~~~-~l~~---------Lrl~vLdLs~n~~L~~Lp~~--L~~L~nLk 90 (1111)
+..++.|+|+.+.+. .+ +..+..+.+|+.+.... .+.. -.+..+++++|+..+.++.. +..+++|+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 556778888877764 33 33455555555543321 1111 12346788888877767765 89999999
Q ss_pred EEEccCCCCCCCCCcc-CCCCCCCCEEEeeCCCCCccchhhHhhh----------------------------------h
Q 001271 91 VVSALPPPARDPTPLS-LLPFCRLKVLELRGCDLSTSAAKGLLEL----------------------------------R 135 (1111)
Q Consensus 91 ~LdLs~N~Is~~iP~s-Ls~L~nL~~LdLS~N~Ls~~~P~~L~~L----------------------------------~ 135 (1111)
+|+|++|.+.+..|.. |..+++|++|+|++|.+++..|..+..+ +
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 9999999999887776 7899999999999999988777766655 3
Q ss_pred hhhhhhhccCCCccchh-hhcc-----ccccc--------------------cC--CC--CCCCccEEEccCCccccc-h
Q 001271 136 HTLEKIICHNSTNALRH-VFAS-----RIVEI--------------------KD--SP--QWNRLSFVSCSCNRLVIM-D 184 (1111)
Q Consensus 136 ~LleLlLs~N~L~sL~~-l~~~-----~I~~L--------------------~~--l~--~L~~L~~L~Ls~N~LssL-P 184 (1111)
+|..+++.+|.+..... .+.. .+..+ .. +. ..++|+.|++++|.++.+ |
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 45666666665432111 1100 00000 00 00 125899999999999955 5
Q ss_pred hhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccCCccCCc--ccCCCCCC
Q 001271 185 ESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL--RGIENLKS 259 (1111)
Q Consensus 185 ~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~N~Lt~L--~~L~~L~s 259 (1111)
..+..+++|+.|+|++|.|..++ .+..+++|+.|+|++|.|+.+++ ....+++|+.|+|++|.|+.+ ..+..+++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 68999999999999999999863 78899999999999999998765 445689999999999999988 36899999
Q ss_pred CCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001271 260 LEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (1111)
Q Consensus 260 L~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~ 300 (1111)
|+.|+|++|+|+.+++ ..+..+++|+.|+|++|++.|.+.
T Consensus 373 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 373 LKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccEEECCCCccccCCH-hHhccCCcccEEEccCCCcccCCC
Confidence 9999999999999885 577899999999999999998864
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.2e-23 Score=255.21 Aligned_cols=237 Identities=18% Similarity=0.203 Sum_probs=147.5
Q ss_pred HHHHhcCCCCCcEEEccCCCCCCC-----------------CCccCC--CCCCCCEEEeeCCCCCccchhhHhhhhhhhh
Q 001271 79 LRRILKLLTSLKVVSALPPPARDP-----------------TPLSLL--PFCRLKVLELRGCDLSTSAAKGLLELRHTLE 139 (1111)
Q Consensus 79 Lp~~L~~L~nLk~LdLs~N~Is~~-----------------iP~sLs--~L~nL~~LdLS~N~Ls~~~P~~L~~L~~Lle 139 (1111)
+|..+.++++|++|+|++|.+++. +|..++ ++++|++|+|++|.+.+.+|..+.++++|..
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 777777788888888888777764 777777 7778888888888777777777777777777
Q ss_pred hhhccCC-Ccc--chhhhccccccccCCCCCCCccEEEccCCccccchh--hhcCCCCCcEEEccCCCCC-CCCCcCCCC
Q 001271 140 KIICHNS-TNA--LRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFA-KVDNLRKCV 213 (1111)
Q Consensus 140 LlLs~N~-L~s--L~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~--~L~~L~nL~~LdLS~N~Ls-~L~~L~~L~ 213 (1111)
+.+.+|+ +.. ++..+.. +..+..+++|++|+|++|+++.+|. .+..+++|+.|+|++|.++ .++.+..++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~----L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~ 353 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQA----LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEI 353 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHH----HHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEE
T ss_pred EECcCCCCCccccchHHHHh----hhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCC
Confidence 7777776 543 3332211 1111223466777777777776666 6667777777777777666 455566666
Q ss_pred CCcEEECCCCCCCCcccccccccc-ceEeeccCCccCCcc-cCCCC--CCCCEEEccCCCCCCCchhhhhc-------CC
Q 001271 214 NLKHLDLGFNNLRSIAAFSEVSCH-IVKLVLRNNALTTLR-GIENL--KSLEGLDISYNIISTFSELEFLA-------SL 282 (1111)
Q Consensus 214 sL~~LdLS~N~Lt~L~~l~~~L~s-L~~L~LS~N~Lt~L~-~L~~L--~sL~~LdLS~N~Is~l~~l~~L~-------~L 282 (1111)
+|+.|+|++|.++.++.....+++ |+.|+|++|.++.+| .+..+ ++|+.|+|++|.|++..+ ..+. .+
T Consensus 354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~ 432 (636)
T 4eco_A 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG-KNFDPLDPTPFKG 432 (636)
T ss_dssp EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTT-CSSCTTCSSCCCC
T ss_pred CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcch-hhhcccccccccC
Confidence 666666666666655554444555 666666666666554 23332 256666666666655332 2333 44
Q ss_pred CCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCC
Q 001271 283 PYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (1111)
Q Consensus 283 ~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It 323 (1111)
++|+.|+|++|.+... ...++..++.|+.++|.+|.++
T Consensus 433 ~~L~~L~Ls~N~l~~l---p~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 433 INVSSINLSNNQISKF---PKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CCEEEEECCSSCCCSC---CTHHHHTTCCCSEEECCSSCCS
T ss_pred CCCCEEECcCCccCcC---CHHHHccCCCCCEEECCCCCCC
Confidence 5666666666666522 2334444555666666666554
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=9.7e-23 Score=230.81 Aligned_cols=202 Identities=18% Similarity=0.226 Sum_probs=98.2
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccc
Q 001271 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (1111)
Q Consensus 82 ~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L 161 (1111)
.+..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..|..+..+++|..+.+.+|.+..++...
T Consensus 64 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~------- 136 (390)
T 3o6n_A 64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI------- 136 (390)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------
T ss_pred HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHH-------
Confidence 3455566666666666655544455555666666666666665555555555555555556555554443221
Q ss_pred cCCCCCCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCCCcCCC-------------------CCCcEEECC
Q 001271 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKC-------------------VNLKHLDLG 221 (1111)
Q Consensus 162 ~~l~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~~L~~L-------------------~sL~~LdLS 221 (1111)
+..+++|++|++++|.++.++. .+..+++|+.|+|++|.++.++ +..+ ++|+.|+++
T Consensus 137 --~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~ 213 (390)
T 3o6n_A 137 --FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 213 (390)
T ss_dssp --TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCCSEEECCSSCSEEECC
T ss_pred --hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeecccccccccCCCCcceEEECC
Confidence 1234455555555555554432 3555555555555555554431 1112 233333333
Q ss_pred CCCCCCccccccccccceEeeccCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCC
Q 001271 222 FNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (1111)
Q Consensus 222 ~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs 296 (1111)
+|.++.++.. .+++|+.|+|++|.++.++.+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.+.
T Consensus 214 ~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 214 HNSINVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp SSCCCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEECCSSCCC
T ss_pred CCeeeecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcCh-hHccccccCCEEECCCCcCc
Confidence 3333333221 123455555555555444444445555555555555544422 33444445555555555443
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=4e-23 Score=255.38 Aligned_cols=246 Identities=21% Similarity=0.173 Sum_probs=195.7
Q ss_pred cccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhcc
Q 001271 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (1111)
Q Consensus 65 l~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~ 144 (1111)
+..+++++|...+.+|..+..+++|+.|+|++|.+++.+|..|..+++|++|+|++|.+++.+|..+..+++|..+.+.+
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 34566777776667777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCcc-chhhhccccccccCCCCCCCccEEEccCCccc-cchhhhcCCCCCcEEEccCCCCCC-CC-CcCCCCCCcEEEC
Q 001271 145 NSTNA-LRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRKCVNLKHLDL 220 (1111)
Q Consensus 145 N~L~s-L~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Ls-sLP~~L~~L~nL~~LdLS~N~Ls~-L~-~L~~L~sL~~LdL 220 (1111)
|.+.. ++.. +..+++|++|+|++|+++ .+|..++.+++|+.|+|++|++.+ ++ .+..+++|+.|+|
T Consensus 476 N~l~~~~p~~----------l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 476 NDLTGEIPSG----------LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp SCCCSCCCGG----------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred CcccCcCCHH----------HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 87653 2222 234678999999999998 888899999999999999999985 44 7888999999999
Q ss_pred CCCCCCC-cccc--------------------------------------------------------------------
Q 001271 221 GFNNLRS-IAAF-------------------------------------------------------------------- 231 (1111)
Q Consensus 221 S~N~Lt~-L~~l-------------------------------------------------------------------- 231 (1111)
++|.+++ +|..
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 9998863 3321
Q ss_pred --ccccccceEeeccCCccCCc-c-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhh
Q 001271 232 --SEVSCHIVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS 307 (1111)
Q Consensus 232 --~~~L~sL~~L~LS~N~Lt~L-~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~ 307 (1111)
...+++|+.|+|++|++++. | .++.+++|+.|+|++|.+++..+ ..++.+++|+.|+|++|.++.. .+..+.
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~---ip~~l~ 701 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGR---IPQAMS 701 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEEC---CCGGGG
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC-hHHhCCCCCCEEECCCCcccCc---CChHHh
Confidence 11246788999999999864 3 68899999999999999985443 6789999999999999999744 244567
Q ss_pred hcCCCCeeecCCCcCCh
Q 001271 308 YFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 308 ~l~~L~~L~LdgN~It~ 324 (1111)
.++.|+.++|++|+++.
T Consensus 702 ~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp GCCCCSEEECCSSEEEE
T ss_pred CCCCCCEEECcCCcccc
Confidence 88889999999998753
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=3.4e-23 Score=251.14 Aligned_cols=244 Identities=15% Similarity=0.196 Sum_probs=208.8
Q ss_pred ccccCCCCCcchh-----------------HHHHhc--CCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCC-CCc
Q 001271 66 YVSDLGDHRALEQ-----------------LRRILK--LLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-LST 125 (1111)
Q Consensus 66 ~vLdLs~n~~L~~-----------------Lp~~L~--~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~-Ls~ 125 (1111)
..++|++|...+. +|..+. ++++|++|+|++|.+.+.+|..|.++++|++|+|++|. +++
T Consensus 209 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~ 288 (636)
T 4eco_A 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288 (636)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence 4677888886664 899888 99999999999999999999999999999999999998 998
Q ss_pred -cchhhHhhh------hhhhhhhhccCCCccchh--hhccccccccCCCCCCCccEEEccCCccc-cchhhhcCCCCCcE
Q 001271 126 -SAAKGLLEL------RHTLEKIICHNSTNALRH--VFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVET 195 (1111)
Q Consensus 126 -~~P~~L~~L------~~LleLlLs~N~L~sL~~--l~~~~I~~L~~l~~L~~L~~L~Ls~N~Ls-sLP~~L~~L~nL~~ 195 (1111)
.+|..+..+ ++|..+.+.+|.+..++. .+ ..+++|++|++++|.++ .+| .+..+++|+.
T Consensus 289 ~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l----------~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL----------QKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH----------TTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred ccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh----------ccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 899999887 899999999998876654 32 35779999999999999 999 8999999999
Q ss_pred EEccCCCCCCCC-CcCCCCC-CcEEECCCCCCCCccccccc--cccceEeeccCCccCCc--ccCC-------CCCCCCE
Q 001271 196 LDLSRNKFAKVD-NLRKCVN-LKHLDLGFNNLRSIAAFSEV--SCHIVKLVLRNNALTTL--RGIE-------NLKSLEG 262 (1111)
Q Consensus 196 LdLS~N~Ls~L~-~L~~L~s-L~~LdLS~N~Lt~L~~l~~~--L~sL~~L~LS~N~Lt~L--~~L~-------~L~sL~~ 262 (1111)
|+|++|.++.++ .+..+++ |++|+|++|.|+.++..... +++|+.|+|++|.++.. ..+. .+++|+.
T Consensus 358 L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp EECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred EECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 999999999876 6888999 99999999999988875554 34899999999999885 3466 7789999
Q ss_pred EEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhh-------cCCCCeeecCCCcCCh
Q 001271 263 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSY-------FAHPAKLKVDGKEIST 324 (1111)
Q Consensus 263 LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~-------l~~L~~L~LdgN~It~ 324 (1111)
|+|++|.|+.++. ..+..+++|+.|+|++|.++..+. ..+.. ++.|+.++|.+|.++.
T Consensus 438 L~Ls~N~l~~lp~-~~~~~l~~L~~L~Ls~N~l~~i~~---~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 502 (636)
T 4eco_A 438 INLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPK---NSLKDENENFKNTYLLTSIDLRFNKLTK 502 (636)
T ss_dssp EECCSSCCCSCCT-HHHHTTCCCSEEECCSSCCSBCCS---SSSEETTEECTTGGGCCEEECCSSCCCB
T ss_pred EECcCCccCcCCH-HHHccCCCCCEEECCCCCCCCcCH---HHhccccccccccCCccEEECcCCcCCc
Confidence 9999999999885 567789999999999999984432 22222 2379999999999873
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=2.1e-22 Score=240.04 Aligned_cols=247 Identities=19% Similarity=0.160 Sum_probs=201.7
Q ss_pred cccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCc-cCCCCCCCCEEEeeCCCCCccc--hhhHhhhhhhhhhhhc
Q 001271 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPL-SLLPFCRLKVLELRGCDLSTSA--AKGLLELRHTLEKIIC 143 (1111)
Q Consensus 67 vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~-sLs~L~nL~~LdLS~N~Ls~~~--P~~L~~L~~LleLlLs 143 (1111)
.+++++|......|..+..+++|+.|+|++|.+.+.+|. .+..+++|++|+|++|.+++.. +..+..+++|..+.+.
T Consensus 305 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 384 (606)
T 3t6q_A 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384 (606)
T ss_dssp EEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECC
T ss_pred EEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECC
Confidence 466777776666677888899999999999988866654 4888999999999999998765 6778888888888898
Q ss_pred cCCCccchhhhccccccccCCCCCCCccEEEccCCccccc-hh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEE
Q 001271 144 HNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM-DE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLD 219 (1111)
Q Consensus 144 ~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssL-P~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~Ld 219 (1111)
+|.+..+... .+..+++|+.|++++|.++.. |. .+..+++|+.|+|++|.+.... .+..+++|+.|+
T Consensus 385 ~n~l~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 385 YNEPLSLKTE---------AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp SCSCEEECTT---------TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCcCCcCCHH---------HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence 8876554321 234577999999999999854 33 4889999999999999998753 688899999999
Q ss_pred CCCCCCCCc--c--ccccccccceEeeccCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCC
Q 001271 220 LGFNNLRSI--A--AFSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (1111)
Q Consensus 220 LS~N~Lt~L--~--~l~~~L~sL~~L~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgN 293 (1111)
|++|.+++. + .....+++|+.|+|++|.++.+ ..+..+++|+.|+|++|+|+..++ ..+..+++| .|+|++|
T Consensus 456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI-EALSHLKGI-YLNLASN 533 (606)
T ss_dssp CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG-GGGTTCCSC-EEECCSS
T ss_pred CCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh-hHhCccccc-EEECcCC
Confidence 999999863 2 2345579999999999999987 368999999999999999998765 788999999 9999999
Q ss_pred CCCCCccchhhHhhhcCCCCeeecCCCcCChhHH
Q 001271 294 PLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (1111)
Q Consensus 294 pLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E~ 327 (1111)
.++..+ +..+..++.++.++|.+|++.+...
T Consensus 534 ~l~~~~---~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 534 HISIIL---PSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCCCCC---GGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cccccC---HhhcccCCCCCEEeCCCCCccccCC
Confidence 998543 4456778889999999999976543
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=2.8e-22 Score=233.09 Aligned_cols=270 Identities=23% Similarity=0.270 Sum_probs=179.2
Q ss_pred ccCCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCC
Q 001271 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP 104 (1111)
+..++.|++..+++..+|. +..+.+|+. +++++|... .++. +..+++|++|+|++|.+.+..|
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~--------------L~Ls~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~ 107 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQ--------------INFSNNQLT-DITP-LKNLTKLVDILMNNNQIADITP 107 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCE--------------EECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCE--------------EECCCCccC-Cchh-hhccccCCEEECCCCccccChh
Confidence 4678999999999988774 555554443 445555432 2333 6777777777777777765443
Q ss_pred ccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhh----------ccccccccCCCCCCCccEEE
Q 001271 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVF----------ASRIVEIKDSPQWNRLSFVS 174 (1111)
Q Consensus 105 ~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~----------~~~I~~L~~l~~L~~L~~L~ 174 (1111)
+..+++|++|+|++|.+++..+ +..+++|..+.+.+|.+..++.+. .+.+..+..+..+++|+.|+
T Consensus 108 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 108 --LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEE
T ss_pred --hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEE
Confidence 6777777777777777766433 666777777777777655443210 01112222345667788888
Q ss_pred ccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcccC
Q 001271 175 CSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGI 254 (1111)
Q Consensus 175 Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L 254 (1111)
+++|.++.++ .+..+++|+.|++++|.+..+..+..+++|+.|++++|.++.++.+ ..+++|+.|+|++|.++.++.+
T Consensus 184 l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l-~~l~~L~~L~l~~n~l~~~~~~ 261 (466)
T 1o6v_A 184 ISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAPL 261 (466)
T ss_dssp CCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG-GGCTTCSEEECCSSCCCCCGGG
T ss_pred CcCCcCCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhh-hcCCCCCEEECCCCccccchhh
Confidence 8888877764 4677778888888888777766667777777777777777776543 3457777777777777777667
Q ss_pred CCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChh
Q 001271 255 ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (1111)
Q Consensus 255 ~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~ 325 (1111)
..+++|+.|+|++|.++.+++ +..+++|+.|+|++|.+..... +..++.|+.++|++|.++..
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG-----GGGCTTCSEEECCSSCCSCC
T ss_pred hcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh-----hcCCCCCCEEECcCCcCCCc
Confidence 777777777777777777653 5667777777777777764321 45566777777777776654
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=9.6e-23 Score=226.24 Aligned_cols=262 Identities=17% Similarity=0.155 Sum_probs=166.8
Q ss_pred CCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCcc
Q 001271 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (1111)
Q Consensus 27 ~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~s 106 (1111)
.++.++++.+++..+|..+. .+ +..+++++|......+..|.++++|++|+|++|.+++..|..
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~--------------l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 97 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PD--------------TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA 97 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TT--------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred cCCEEECCCCCccccCCCCC--CC--------------CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH
Confidence 47889999999988886542 11 123556666544434556777888888888888887777777
Q ss_pred CCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccc---cc
Q 001271 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV---IM 183 (1111)
Q Consensus 107 Ls~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Ls---sL 183 (1111)
|..+++|++|+|++|.++. +|..+. ++|.++.+.+|.+..++... +..+++|+.|++++|.++ ..
T Consensus 98 ~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGV---------FSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp STTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGG---------GSSCSSCCEEECCSCCCBGGGSC
T ss_pred hhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhH---------hCCCccCCEEECCCCccccCCCC
Confidence 8888888888888888774 443333 56677777777766554321 124567777777777775 23
Q ss_pred hhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccCCccCCcc--cCCCCCCC
Q 001271 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (1111)
Q Consensus 184 P~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~N~Lt~L~--~L~~L~sL 260 (1111)
|..+..+ +|+.|++++|.++.++.-. .++|+.|+|++|.|+.+++ ....+++|+.|+|++|.|+.++ .+..+++|
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSSCCSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred cccccCC-ccCEEECcCCCCCccCccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 3455555 6777777777776665211 2567777777777766653 3334567777777777776663 46666777
Q ss_pred CEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhh------hcCCCCeeecCCCcCC
Q 001271 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS------YFAHPAKLKVDGKEIS 323 (1111)
Q Consensus 261 ~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~------~l~~L~~L~LdgN~It 323 (1111)
+.|+|++|.|+.+| ..+..+++|+.|+|++|+++..+. ..|. .+..++.+.|.+|++.
T Consensus 244 ~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 244 RELHLDNNKLSRVP--AGLPDLKLLQVVYLHTNNITKVGV---NDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CEEECCSSCCCBCC--TTGGGCTTCCEEECCSSCCCBCCT---TSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CEEECCCCcCeecC--hhhhcCccCCEEECCCCCCCccCh---hHccccccccccccccceEeecCccc
Confidence 77777777777666 346666777777777777664421 1111 1244566667777665
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=2.3e-23 Score=230.81 Aligned_cols=241 Identities=19% Similarity=0.188 Sum_probs=204.9
Q ss_pred ccccccCCCCCcch--hHHHHhcCCCCCcEEEccC-CCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhh
Q 001271 64 RAYVSDLGDHRALE--QLRRILKLLTSLKVVSALP-PPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEK 140 (1111)
Q Consensus 64 rl~vLdLs~n~~L~--~Lp~~L~~L~nLk~LdLs~-N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleL 140 (1111)
++..++++++...+ .+|..+.++++|++|+|++ |.+.+.+|..|..+++|++|+|++|.+++.+|..+..+++|..+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34567888888777 7889999999999999995 99999999999999999999999999998899999999999999
Q ss_pred hhccCCCc-cchhhhccccccccCCCCCCCccEEEccCCccc-cchhhhcCCC-CCcEEEccCCCCCC-CC-CcCCCCCC
Q 001271 141 IICHNSTN-ALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLP-AVETLDLSRNKFAK-VD-NLRKCVNL 215 (1111)
Q Consensus 141 lLs~N~L~-sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Ls-sLP~~L~~L~-nL~~LdLS~N~Ls~-L~-~L~~L~sL 215 (1111)
++.+|.+. .++..+ ..+++|++|+|++|.|+ .+|..+..++ +|+.|+|++|.+++ ++ .+..++ |
T Consensus 131 ~Ls~N~l~~~~p~~~----------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 131 DFSYNALSGTLPPSI----------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp ECCSSEEESCCCGGG----------GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred eCCCCccCCcCChHH----------hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 99999866 233222 34679999999999999 8999999998 99999999999985 33 677776 9
Q ss_pred cEEECCCCCCCCccc-cccccccceEeeccCCccCCc-ccCCCCCCCCEEEccCCCCC-CCchhhhhcCCCCCcEEEecC
Q 001271 216 KHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL-RGIENLKSLEGLDISYNIIS-TFSELEFLASLPYLLNLWLEG 292 (1111)
Q Consensus 216 ~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~N~Lt~L-~~L~~L~sL~~LdLS~N~Is-~l~~l~~L~~L~~L~~L~Lsg 292 (1111)
+.|+|++|.+++..+ ....+++|+.|+|++|.++.. +.+..+++|+.|+|++|.|+ .+| ..+..+++|+.|+|++
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP--QGLTQLKFLHSLNVSF 277 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC--GGGGGCTTCCEEECCS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC--hHHhcCcCCCEEECcC
Confidence 999999999986544 455689999999999999875 67888999999999999998 444 6789999999999999
Q ss_pred CCCCCC-ccchhhHhhhcCCCCeeecCCCcC
Q 001271 293 NPLCCS-RWYRAQVFSYFAHPAKLKVDGKEI 322 (1111)
Q Consensus 293 NpLs~~-~~~r~~if~~l~~L~~L~LdgN~I 322 (1111)
|+++.. +.. ..++.++.+++.+|+.
T Consensus 278 N~l~~~ip~~-----~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 278 NNLCGEIPQG-----GNLQRFDVSAYANNKC 303 (313)
T ss_dssp SEEEEECCCS-----TTGGGSCGGGTCSSSE
T ss_pred CcccccCCCC-----ccccccChHHhcCCCC
Confidence 999743 221 4567889999999984
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=2.3e-22 Score=252.50 Aligned_cols=239 Identities=18% Similarity=0.173 Sum_probs=201.3
Q ss_pred hHHHHhcCCCCCcEEEccCCCCCC-----------------CCCccCC--CCCCCCEEEeeCCCCCccchhhHhhhhhhh
Q 001271 78 QLRRILKLLTSLKVVSALPPPARD-----------------PTPLSLL--PFCRLKVLELRGCDLSTSAAKGLLELRHTL 138 (1111)
Q Consensus 78 ~Lp~~L~~L~nLk~LdLs~N~Is~-----------------~iP~sLs--~L~nL~~LdLS~N~Ls~~~P~~L~~L~~Ll 138 (1111)
.+|..+.++++|+.|+|++|.|++ .+|..++ .+++|++|+|++|.+.+.+|..|.++++|.
T Consensus 439 ~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred chhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 389999999999999999999998 3899988 999999999999999999999999999999
Q ss_pred hhhhccCC-Ccc--chhhhcccccccc-CCCCCCCccEEEccCCccccchh--hhcCCCCCcEEEccCCCCCCCCCcCCC
Q 001271 139 EKIICHNS-TNA--LRHVFASRIVEIK-DSPQWNRLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFAKVDNLRKC 212 (1111)
Q Consensus 139 eLlLs~N~-L~s--L~~l~~~~I~~L~-~l~~L~~L~~L~Ls~N~LssLP~--~L~~L~nL~~LdLS~N~Ls~L~~L~~L 212 (1111)
.+.+.+|+ +.. ++..+ ..+. .+..+++|+.|+|++|.|+.+|. .+..+++|+.|+|++|.|+.++.+..+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i----~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L 594 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADW----TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTN 594 (876)
T ss_dssp EEECTTCTTSCHHHHHHHH----HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTT
T ss_pred EEECcCCCCcccccchHHH----HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCC
Confidence 99999997 664 44433 2222 44567799999999999999998 899999999999999999988899999
Q ss_pred CCCcEEECCCCCCCCcccccccccc-ceEeeccCCccCCcc-cCCCCC--CCCEEEccCCCCCCCch-h-hhhc--CCCC
Q 001271 213 VNLKHLDLGFNNLRSIAAFSEVSCH-IVKLVLRNNALTTLR-GIENLK--SLEGLDISYNIISTFSE-L-EFLA--SLPY 284 (1111)
Q Consensus 213 ~sL~~LdLS~N~Lt~L~~l~~~L~s-L~~L~LS~N~Lt~L~-~L~~L~--sL~~LdLS~N~Is~l~~-l-~~L~--~L~~ 284 (1111)
++|+.|+|++|.|+.++.....+++ |+.|+|++|.|+.+| .+..++ +|+.|+|++|.|.+..+ + ..+. .+++
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred CcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 9999999999999988877767788 999999999999886 444443 49999999999977432 1 1122 3458
Q ss_pred CcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCC
Q 001271 285 LLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (1111)
Q Consensus 285 L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It 323 (1111)
|+.|+|++|.+... ...++..++.|+.++|.+|.+.
T Consensus 675 L~~L~Ls~N~L~~l---p~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 675 ASTVTLSYNEIQKF---PTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp EEEEECCSSCCCSC---CHHHHHTTCCCSEEECCSCCCS
T ss_pred cCEEEccCCcCCcc---CHHHHccCCCCCEEECCCCcCC
Confidence 99999999999843 3555667889999999999886
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=2.3e-22 Score=239.68 Aligned_cols=152 Identities=19% Similarity=0.214 Sum_probs=86.6
Q ss_pred CccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC-CcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccC
Q 001271 169 RLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~ 245 (1111)
+|+.|++++|.++.++. .|..+++|+.|+|++|.++.++ .+..+++|++|++++|.++.+++ ....+++|+.|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 45566666666665544 3666666666666666666654 56666666666666666665543 333456666666666
Q ss_pred CccCC-cc--cCCCCCCCCEEEccCCCCCCCch-hhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCc
Q 001271 246 NALTT-LR--GIENLKSLEGLDISYNIISTFSE-LEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (1111)
Q Consensus 246 N~Lt~-L~--~L~~L~sL~~LdLS~N~Is~l~~-l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~ 321 (1111)
|.+.. ++ .+..+++|+.|+|++|.+..+.. ...+..+++|+.|++++|.+... .+..+..++.|+.++|.+|.
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL---KTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE---CTTTTTTCTTCSEEECTTCC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC---CHHHhcCCccCCeEECCCCc
Confidence 66552 22 35566666666666666655431 13455566666666666665422 12234445556666666655
Q ss_pred CC
Q 001271 322 IS 323 (1111)
Q Consensus 322 It 323 (1111)
+.
T Consensus 412 l~ 413 (606)
T 3t6q_A 412 LK 413 (606)
T ss_dssp EE
T ss_pred CC
Confidence 53
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=5.4e-22 Score=219.73 Aligned_cols=218 Identities=17% Similarity=0.165 Sum_probs=105.3
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCC
Q 001271 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (1111)
Q Consensus 87 ~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~ 166 (1111)
++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|..+.+.+|.+..++..+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~------------ 119 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM------------ 119 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC------------
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh------------
Confidence 34555555555555444444555555555555555555544555555555555555555444332211
Q ss_pred CCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCC--C--CCcCCCCCCcEEECCCCCCCCccccccccccceEe
Q 001271 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK--V--DNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKL 241 (1111)
Q Consensus 167 L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~--L--~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L 241 (1111)
.++|++|++++|.++.++. .+..+++|+.|+|++|.+.. + ..+..+++|+.|++++|.++.++.... ++|+.|
T Consensus 120 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L 197 (330)
T 1xku_A 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTEL 197 (330)
T ss_dssp CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEE
T ss_pred cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEE
Confidence 1245555555555554433 34555555555555555532 1 234445555555555555554443221 455555
Q ss_pred eccCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCC
Q 001271 242 VLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (1111)
Q Consensus 242 ~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~Ldg 319 (1111)
+|++|.++.+ ..+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.+...+. .+..++.|+.++|.+
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~----~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKVPG----GLADHKYIQVVYLHN 272 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSSCCT----TTTTCSSCCEEECCS
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCccCCh----hhccCCCcCEEECCC
Confidence 5555555544 234455555555555555554442 334445555555555555543221 123344455555555
Q ss_pred CcCC
Q 001271 320 KEIS 323 (1111)
Q Consensus 320 N~It 323 (1111)
|+++
T Consensus 273 N~i~ 276 (330)
T 1xku_A 273 NNIS 276 (330)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 5554
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=7.4e-22 Score=229.55 Aligned_cols=262 Identities=20% Similarity=0.256 Sum_probs=166.9
Q ss_pred cccCCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCC
Q 001271 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPT 103 (1111)
Q Consensus 24 lL~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~i 103 (1111)
.+..++.|+|+.+.+..++. +..+.+|+.+ ++++|.... ++. +.++++|++|+|++|.+.+..
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L--------------~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP-LKNLTKLVDI--------------LMNNNQIAD-ITP-LANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEE--------------ECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred hhcCCCEEECCCCccCCchh-hhccccCCEE--------------ECCCCcccc-Chh-hcCCCCCCEEECCCCCCCCCh
Confidence 36778999999999999887 7666666554 334443322 222 566666666666666666432
Q ss_pred CccCCCCCCCCEEEeeCCCCCccch-------------------hhHhhhhhhhhhhhccCCCccchhhhccccccccCC
Q 001271 104 PLSLLPFCRLKVLELRGCDLSTSAA-------------------KGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (1111)
Q Consensus 104 P~sLs~L~nL~~LdLS~N~Ls~~~P-------------------~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l 164 (1111)
+ +..+++|++|+|++|.+++... ..+..+++|..+.+.+|.+..+. .+
T Consensus 129 ~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~l 195 (466)
T 1o6v_A 129 P--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-----------VL 195 (466)
T ss_dssp G--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-----------GG
T ss_pred H--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-----------hh
Confidence 2 5666666666666666654211 11344445555555555444332 23
Q ss_pred CCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeecc
Q 001271 165 PQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLR 244 (1111)
Q Consensus 165 ~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS 244 (1111)
..+++|++|++++|.++.++. +..+++|+.|+|++|.++.++.+..+++|+.|++++|.++.+++ ...+++|+.|+|+
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLG 273 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECC
T ss_pred ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECC
Confidence 345677777777777776644 56677777777777777777667777777777777777776665 3345677777777
Q ss_pred CCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCCh
Q 001271 245 NNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 245 ~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~ 324 (1111)
+|.++.++.+..+++|+.|+|++|.+.++++ +..+++|+.|+|++|++..... +..++.|+.+++.+|.++.
T Consensus 274 ~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 274 ANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCSSCCCC
T ss_pred CCccCccccccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh-----hccCccCCEeECCCCccCC
Confidence 7777776666677777777777777776653 5566777777777777664421 3456667777777776665
Q ss_pred h
Q 001271 325 R 325 (1111)
Q Consensus 325 ~ 325 (1111)
.
T Consensus 346 ~ 346 (466)
T 1o6v_A 346 V 346 (466)
T ss_dssp C
T ss_pred c
Confidence 4
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.6e-22 Score=239.85 Aligned_cols=228 Identities=20% Similarity=0.192 Sum_probs=133.2
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccc
Q 001271 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (1111)
Q Consensus 82 ~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L 161 (1111)
.+..+++|++|+|++|.|.+..|..|..+++|++|+|++|.|++..|..|..+++|..|.+.+|.+..++...
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~------- 142 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI------- 142 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH-------
Confidence 3444555555555555555444445555555555555555555544444455555555555555444333211
Q ss_pred cCCCCCCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--Cc-----------------------------
Q 001271 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NL----------------------------- 209 (1111)
Q Consensus 162 ~~l~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L----------------------------- 209 (1111)
+..+++|++|+|++|.|+.+++ .|..+++|+.|+|++|.|+.++ .+
T Consensus 143 --~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~ 220 (597)
T 3oja_B 143 --FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220 (597)
T ss_dssp --TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCS
T ss_pred --hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccC
Confidence 1123344444444444443322 3444444444444444444321 00
Q ss_pred --------CCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhh
Q 001271 210 --------RKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFL 279 (1111)
Q Consensus 210 --------~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L 279 (1111)
...++|+.|+|++|.+++++ ....+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+.++ ..+
T Consensus 221 n~l~~~~~~~~~~L~~L~L~~n~l~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~ 297 (597)
T 3oja_B 221 NSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN--LYG 297 (597)
T ss_dssp SCCCEEECSCCSCCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE--CSS
T ss_pred CcccccccccCCCCCEEECCCCCCCCCh-hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC--ccc
Confidence 01234666666666666543 233467888888888888876 36778888888888888888876 455
Q ss_pred cCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChh
Q 001271 280 ASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (1111)
Q Consensus 280 ~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~ 325 (1111)
..+++|+.|+|++|++...+ ..+..++.|+.++|.+|.++..
T Consensus 298 ~~l~~L~~L~Ls~N~l~~i~----~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 298 QPIPTLKVLDLSHNHLLHVE----RNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp SCCTTCCEEECCSSCCCCCG----GGHHHHTTCSEEECCSSCCCCC
T ss_pred ccCCCCcEEECCCCCCCccC----cccccCCCCCEEECCCCCCCCc
Confidence 67888888888888887543 2345678889999999988654
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=5.7e-22 Score=232.29 Aligned_cols=157 Identities=18% Similarity=0.154 Sum_probs=130.6
Q ss_pred CCCCCccEEEccCCcccc-chhhhcCCCCCcEEEccCCCCCCCC----CcCCCCCCcEEECCCCCCCC-cccc-cccccc
Q 001271 165 PQWNRLSFVSCSCNRLVI-MDESLQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRS-IAAF-SEVSCH 237 (1111)
Q Consensus 165 ~~L~~L~~L~Ls~N~Lss-LP~~L~~L~nL~~LdLS~N~Ls~L~----~L~~L~sL~~LdLS~N~Lt~-L~~l-~~~L~s 237 (1111)
..+++|++|++++|.++. +|..+..+++|+.|+|++|+|+.++ .+..+++|++|+|++|.++. ++.. ...+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 467889999999999985 7778899999999999999998753 47889999999999999988 7653 445789
Q ss_pred ceEeeccCCccCCc-c-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCee
Q 001271 238 IVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKL 315 (1111)
Q Consensus 238 L~~L~LS~N~Lt~L-~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L 315 (1111)
|+.|+|++|.++.. + .+. ++|+.|+|++|+|+.+| ..+..+++|+.|+|++|+++..+. ..+..++.|+.+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L 473 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIP--KQVVKLEALQELNVASNQLKSVPD---GIFDRLTSLQKI 473 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCC--GGGGGCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEE
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccc--hhhhcCCCCCEEECCCCcCCccCH---HHhccCCcccEE
Confidence 99999999999764 2 232 79999999999999988 455699999999999999986543 246778899999
Q ss_pred ecCCCcCChhHHH
Q 001271 316 KVDGKEISTRELW 328 (1111)
Q Consensus 316 ~LdgN~It~~E~~ 328 (1111)
+|++|++.+....
T Consensus 474 ~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 474 WLHTNPWDCSCPR 486 (520)
T ss_dssp ECCSSCBCCCHHH
T ss_pred ECcCCCCcccCCc
Confidence 9999999876543
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=1.1e-21 Score=237.20 Aligned_cols=240 Identities=20% Similarity=0.174 Sum_probs=136.4
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEE----------------------------eeCCCCCccchhhHhh
Q 001271 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLE----------------------------LRGCDLSTSAAKGLLE 133 (1111)
Q Consensus 82 ~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~Ld----------------------------LS~N~Ls~~~P~~L~~ 133 (1111)
.+..+++|+.|+|++|.+.+..|..|..+++|++|+ |++|.+++..|..+..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 345556666666666666555555555544444444 4445555555667777
Q ss_pred hhhhhhhhhccCCCcc-chhhhccc-------------cccc--cCCCCCCCccEEEccCCccc---cchhhhcCCCCCc
Q 001271 134 LRHTLEKIICHNSTNA-LRHVFASR-------------IVEI--KDSPQWNRLSFVSCSCNRLV---IMDESLQLLPAVE 194 (1111)
Q Consensus 134 L~~LleLlLs~N~L~s-L~~l~~~~-------------I~~L--~~l~~L~~L~~L~Ls~N~Ls---sLP~~L~~L~nL~ 194 (1111)
+++|..+++.+|.+.. ++...+.. +..+ ..+..+++|+.|++++|.++ .+|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 7777788888777642 22111110 0000 11233455666666666554 3455566666666
Q ss_pred EEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccc---------cccccccceEeeccCCccCCcc--cCCCCCCCC
Q 001271 195 TLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA---------FSEVSCHIVKLVLRNNALTTLR--GIENLKSLE 261 (1111)
Q Consensus 195 ~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~---------l~~~L~sL~~L~LS~N~Lt~L~--~L~~L~sL~ 261 (1111)
.|+|++|.|+.++ .+..+++|+.|+|++|.++.++. ....+++|+.|+|++|.|+.++ .+..+++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 6666666666653 35666666666666666665422 1233566666666666666664 356666666
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhh-hcCCCCeeecCCCcCChh
Q 001271 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS-YFAHPAKLKVDGKEISTR 325 (1111)
Q Consensus 262 ~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~-~l~~L~~L~LdgN~It~~ 325 (1111)
.|+|++|+|+.+++ ..+..+++|+.|+|++|.++..+ ...+. .++.++.++|.+|++.+.
T Consensus 564 ~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 564 IIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVE---KKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp EEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCCCBCC---HHHHHHHHTTCSEEECTTCCCCBC
T ss_pred eeECCCCCCCcCCH-hHhCCCCCCCEEECCCCcCCccC---hhHhcccccccCEEEccCCCcccC
Confidence 66666666666664 44566666666666666665332 23333 456666666666666543
No 27
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=2.6e-22 Score=232.56 Aligned_cols=238 Identities=16% Similarity=0.178 Sum_probs=205.0
Q ss_pred CcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhh
Q 001271 74 RALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHV 153 (1111)
Q Consensus 74 ~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l 153 (1111)
..+..+|..+ .++|+.|+|++|.|.+..|..|..+++|++|+|++|.|++..+..|..+++|..+.+.+|.+..++..
T Consensus 64 ~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 64 RGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp SCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred CCcCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChh
Confidence 3455566533 36899999999999988899999999999999999999998889999999999999999988766543
Q ss_pred hccccccccCCCCCCCccEEEccCCccccchh-hhcCCCCCcEEEccC-CCCCCCC--CcCCCCCCcEEECCCCCCCCcc
Q 001271 154 FASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIA 229 (1111)
Q Consensus 154 ~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~-N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~ 229 (1111)
. +..+++|++|+|++|.|+.+|. .|..+++|+.|+|++ |.+..++ .+..+++|+.|+|++|.|+.++
T Consensus 142 ~---------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 142 A---------FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp T---------SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred h---------hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 2 3457899999999999998876 789999999999999 5666664 6889999999999999999987
Q ss_pred ccccccccceEeeccCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhh
Q 001271 230 AFSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS 307 (1111)
Q Consensus 230 ~l~~~L~sL~~L~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~ 307 (1111)
.+ ..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.++..+ ...|.
T Consensus 213 ~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~ 287 (452)
T 3zyi_A 213 NL-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLP---HDLFT 287 (452)
T ss_dssp CC-TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---TTSST
T ss_pred cc-cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCccC---hHHhc
Confidence 54 4568999999999999998 368999999999999999999875 67899999999999999998553 34566
Q ss_pred hcCCCCeeecCCCcCChhHH
Q 001271 308 YFAHPAKLKVDGKEISTREL 327 (1111)
Q Consensus 308 ~l~~L~~L~LdgN~It~~E~ 327 (1111)
.++.|+.++|++|++.+...
T Consensus 288 ~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TCTTCCEEECCSSCEECSTT
T ss_pred cccCCCEEEccCCCcCCCCC
Confidence 78899999999999876553
No 28
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=2.9e-22 Score=231.37 Aligned_cols=238 Identities=16% Similarity=0.190 Sum_probs=205.5
Q ss_pred CcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhh
Q 001271 74 RALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHV 153 (1111)
Q Consensus 74 ~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l 153 (1111)
+.+..+|..+ .++|+.|+|++|.|....+..|..+++|++|+|++|.|+...+..|..+++|..+.+.+|.+..++..
T Consensus 53 ~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 53 KNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp CCCSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred CCcCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence 3456667643 37899999999999988889999999999999999999998889999999999999999988766542
Q ss_pred hccccccccCCCCCCCccEEEccCCccccchh-hhcCCCCCcEEEccC-CCCCCCC--CcCCCCCCcEEECCCCCCCCcc
Q 001271 154 FASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIA 229 (1111)
Q Consensus 154 ~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~-N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~ 229 (1111)
. +..+++|++|+|++|.|+.+|. .|..+++|+.|+|++ |.+..++ .+..+++|+.|+|++|.|+.++
T Consensus 131 ~---------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 131 A---------FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp T---------SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred H---------hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 2 3457899999999999998876 789999999999999 4566654 6889999999999999999988
Q ss_pred ccccccccceEeeccCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhh
Q 001271 230 AFSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS 307 (1111)
Q Consensus 230 ~l~~~L~sL~~L~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~ 307 (1111)
.+ ..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.++..+ ...|.
T Consensus 202 ~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~ 276 (440)
T 3zyj_A 202 NL-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLLP---HDLFT 276 (440)
T ss_dssp CC-TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCCCC---TTTTS
T ss_pred cc-CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCccC---hhHhc
Confidence 64 4568999999999999998 378999999999999999999876 67899999999999999998553 44567
Q ss_pred hcCCCCeeecCCCcCChhHH
Q 001271 308 YFAHPAKLKVDGKEISTREL 327 (1111)
Q Consensus 308 ~l~~L~~L~LdgN~It~~E~ 327 (1111)
.++.|+.++|++|++.+...
T Consensus 277 ~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp SCTTCCEEECCSSCEECSST
T ss_pred cccCCCEEEcCCCCccCCCC
Confidence 78899999999999876553
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=2.4e-22 Score=236.38 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=101.1
Q ss_pred CCCccEEEccCCcccc-chh---hhcCCCCCcEEEccCCCCCCCC----CcCCCCCCcEEECCCCCCCCccccccccccc
Q 001271 167 WNRLSFVSCSCNRLVI-MDE---SLQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHI 238 (1111)
Q Consensus 167 L~~L~~L~Ls~N~Lss-LP~---~L~~L~nL~~LdLS~N~Ls~L~----~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL 238 (1111)
+++|++|++++|.++. +|. .+..+++|+.|+|++|.|+.++ .+..+++|++|+|++|+|+.++.....+++|
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L 412 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM 412 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTC
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccc
Confidence 4556666666666652 221 2455666666666666666543 2556666666666666666666544445566
Q ss_pred eEeeccCCccCCccc-------------------CCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001271 239 VKLVLRNNALTTLRG-------------------IENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (1111)
Q Consensus 239 ~~L~LS~N~Lt~L~~-------------------L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~ 299 (1111)
++|+|++|.|+.++. +..+++|+.|+|++|+|+.+|. ...+++|+.|+|++|+++..+
T Consensus 413 ~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~---~~~l~~L~~L~Ls~N~l~~~~ 489 (549)
T 2z81_A 413 RFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD---ASLFPVLLVMKISRNQLKSVP 489 (549)
T ss_dssp CEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC---GGGCTTCCEEECCSSCCCCCC
T ss_pred cEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC---cccCccCCEEecCCCccCCcC
Confidence 666666666554321 1357788888888888887774 346788888888888887543
Q ss_pred cchhhHhhhcCCCCeeecCCCcCChhHH
Q 001271 300 WYRAQVFSYFAHPAKLKVDGKEISTREL 327 (1111)
Q Consensus 300 ~~r~~if~~l~~L~~L~LdgN~It~~E~ 327 (1111)
+..+..++.|+.++|++|++.+...
T Consensus 490 ---~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 490 ---DGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ---TTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ---HHHHhcCcccCEEEecCCCccCCCc
Confidence 3446678889999999999887654
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.3e-23 Score=232.73 Aligned_cols=243 Identities=21% Similarity=0.194 Sum_probs=207.2
Q ss_pred CCcEEEecCCCcc---chHHhhhhcccchhhccCCCccccccccccCCC-CCcchhHHHHhcCCCCCcEEEccCCCCCCC
Q 001271 27 GSIVLKLNPAGLH---YVQSRLEALRELERLLAGAPLDYLRAYVSDLGD-HRALEQLRRILKLLTSLKVVSALPPPARDP 102 (1111)
Q Consensus 27 ~lk~L~Ls~~~L~---~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~-n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~ 102 (1111)
.++.|+|+.+.+. .+|..+..+.+|+. +++++ +...+.+|..+.++++|++|+|++|.+++.
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~--------------L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNF--------------LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSE--------------EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCe--------------eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc
Confidence 4678999999998 57877777776554 45664 666667888999999999999999999989
Q ss_pred CCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCc-cchhhhccccccccCCCCCC-CccEEEccCCcc
Q 001271 103 TPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTN-ALRHVFASRIVEIKDSPQWN-RLSFVSCSCNRL 180 (1111)
Q Consensus 103 iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~-sL~~l~~~~I~~L~~l~~L~-~L~~L~Ls~N~L 180 (1111)
+|..|..+++|++|+|++|.+++.+|..+..+++|..+.+.+|.+. .++..+ ..++ +|++|++++|.+
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l----------~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY----------GSFSKLFTSMTISRNRL 186 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG----------GCCCTTCCEEECCSSEE
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH----------hhhhhcCcEEECcCCee
Confidence 9999999999999999999999889999999999999999999876 343322 2344 899999999999
Q ss_pred c-cchhhhcCCCCCcEEEccCCCCCCC--CCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCC-cc-cCC
Q 001271 181 V-IMDESLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LR-GIE 255 (1111)
Q Consensus 181 s-sLP~~L~~L~nL~~LdLS~N~Ls~L--~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~-L~-~L~ 255 (1111)
+ .+|..+..++ |+.|+|++|.++.. ..+..+++|+.|+|++|.++...+....+++|++|+|++|.|++ ++ .+.
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHh
Confidence 9 7888888887 99999999999864 36889999999999999999776666668999999999999984 44 688
Q ss_pred CCCCCCEEEccCCCCCC-CchhhhhcCCCCCcEEEecCCCCCC
Q 001271 256 NLKSLEGLDISYNIIST-FSELEFLASLPYLLNLWLEGNPLCC 297 (1111)
Q Consensus 256 ~L~sL~~LdLS~N~Is~-l~~l~~L~~L~~L~~L~LsgNpLs~ 297 (1111)
.+++|+.|+|++|.|++ +|. ...+++|+.|++++|+.-|
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~---~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCC---STTGGGSCGGGTCSSSEEE
T ss_pred cCcCCCEEECcCCcccccCCC---CccccccChHHhcCCCCcc
Confidence 99999999999999984 442 3788999999999999543
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2.5e-22 Score=252.13 Aligned_cols=262 Identities=14% Similarity=0.170 Sum_probs=194.6
Q ss_pred CCccchHHhhhhcccchhhccCCCccccccccccCCCCCcch-----------------hHHHHhc--CCCCCcEEEccC
Q 001271 36 AGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALE-----------------QLRRILK--LLTSLKVVSALP 96 (1111)
Q Consensus 36 ~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~-----------------~Lp~~L~--~L~nLk~LdLs~ 96 (1111)
|.+..+|..+..+.+|+. ++|++|+..+ .+|..+. ++++|++|+|++
T Consensus 435 N~L~~IP~~l~~L~~L~~--------------L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQI--------------IYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CEEEEECGGGGGCTTCCE--------------EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred CcccchhHHHhcCCCCCE--------------EECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence 455558877777776654 3455555444 4888766 999999999999
Q ss_pred CCCCCCCCccCCCCCCCCEEEeeCCC-CCc-cchhhHhhhh-------hhhhhhhccCCCccchh--hhccccccccCCC
Q 001271 97 PPARDPTPLSLLPFCRLKVLELRGCD-LST-SAAKGLLELR-------HTLEKIICHNSTNALRH--VFASRIVEIKDSP 165 (1111)
Q Consensus 97 N~Is~~iP~sLs~L~nL~~LdLS~N~-Ls~-~~P~~L~~L~-------~LleLlLs~N~L~sL~~--l~~~~I~~L~~l~ 165 (1111)
|.+.+.+|..|.++++|++|+|++|. +++ .+|..+..+. +|..+.+.+|.+..++. .+ .
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l----------~ 570 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL----------Q 570 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH----------T
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh----------h
Confidence 99999999999999999999999998 888 8898888887 89999999998776654 22 3
Q ss_pred CCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC-CcCCCCC-CcEEECCCCCCCCcccccccc--ccceEe
Q 001271 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVN-LKHLDLGFNNLRSIAAFSEVS--CHIVKL 241 (1111)
Q Consensus 166 ~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~-~L~~L~s-L~~LdLS~N~Lt~L~~l~~~L--~sL~~L 241 (1111)
.+++|+.|+|++|.|+.+| .+..+++|+.|+|++|.|..++ .+..+++ |+.|+|++|.|+.++.....+ ++|+.|
T Consensus 571 ~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp TCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEE
T ss_pred cCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEE
Confidence 4668888888888888887 7888888888888888888765 6777777 888888888888777654443 348888
Q ss_pred eccCCccCCc-ccCC------CCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhH----hhhcC
Q 001271 242 VLRNNALTTL-RGIE------NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQV----FSYFA 310 (1111)
Q Consensus 242 ~LS~N~Lt~L-~~L~------~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~i----f~~l~ 310 (1111)
+|++|.|.+. +.+. .+++|+.|+|++|.|+.+|. ..+..+++|+.|+|++|.+...+...... +..++
T Consensus 650 ~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~-~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH-HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGG
T ss_pred ECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH-HHHccCCCCCEEECCCCcCCccChHHhccccccccccC
Confidence 8888888664 3222 34578888888888887774 44557788888888888877443211100 11223
Q ss_pred CCCeeecCCCcCC
Q 001271 311 HPAKLKVDGKEIS 323 (1111)
Q Consensus 311 ~L~~L~LdgN~It 323 (1111)
.|+.++|.+|.++
T Consensus 729 ~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 729 LLTTIDLRFNKLT 741 (876)
T ss_dssp GCCEEECCSSCCC
T ss_pred CccEEECCCCCCc
Confidence 6778888888775
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=2.9e-22 Score=247.75 Aligned_cols=222 Identities=19% Similarity=0.165 Sum_probs=190.1
Q ss_pred ccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccC
Q 001271 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (1111)
Q Consensus 66 ~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N 145 (1111)
..+++++|...+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..+..+++|..+++.+|
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC
Confidence 35778888887888999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCc-cchhhhccccccccCCCCCCCccEEEccCCccc-cchhhhcCCCCCcEEEccCCCCCC-CC---------------
Q 001271 146 STN-ALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD--------------- 207 (1111)
Q Consensus 146 ~L~-sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Ls-sLP~~L~~L~nL~~LdLS~N~Ls~-L~--------------- 207 (1111)
.+. .++..+ ..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.+.+ +|
T Consensus 501 ~l~~~~p~~~----------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~ 570 (768)
T 3rgz_A 501 RLTGEIPKWI----------GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570 (768)
T ss_dssp CCCSCCCGGG----------GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT
T ss_pred ccCCcCChHH----------hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcc
Confidence 876 333322 23678999999999998 888899999999999999998763 22
Q ss_pred --------------------------------------------------------CcCCCCCCcEEECCCCCCCC-ccc
Q 001271 208 --------------------------------------------------------NLRKCVNLKHLDLGFNNLRS-IAA 230 (1111)
Q Consensus 208 --------------------------------------------------------~L~~L~sL~~LdLS~N~Lt~-L~~ 230 (1111)
.+..+++|+.|+|++|++++ +|.
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~ 650 (768)
T 3rgz_A 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650 (768)
T ss_dssp CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG
T ss_pred ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH
Confidence 23446789999999999995 555
Q ss_pred cccccccceEeeccCCccCCc-c-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001271 231 FSEVSCHIVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (1111)
Q Consensus 231 l~~~L~sL~~L~LS~N~Lt~L-~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~ 298 (1111)
....++.|+.|+|++|.+++. | .++.+++|+.|||++|++++..+ ..+..+++|+.|+|++|+++..
T Consensus 651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP-QAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC-GGGGGCCCCSEEECCSSEEEEE
T ss_pred HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECcCCccccc
Confidence 667789999999999999964 4 79999999999999999995443 6789999999999999999754
No 33
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=1.2e-21 Score=212.71 Aligned_cols=207 Identities=21% Similarity=0.171 Sum_probs=151.3
Q ss_pred CCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCC-CccchhhhccccccccCC
Q 001271 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVFASRIVEIKDS 164 (1111)
Q Consensus 86 L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~-L~sL~~l~~~~I~~L~~l 164 (1111)
.++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|..+.+.+|. +..+... .+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~---------~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA---------TF 101 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT---------TT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH---------Hh
Confidence 3566677777777665555566667777777777777666556666666666655555554 3333211 12
Q ss_pred CCCCCccEEEccCCccccc-hhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccc-ccccccceE
Q 001271 165 PQWNRLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVK 240 (1111)
Q Consensus 165 ~~L~~L~~L~Ls~N~LssL-P~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~ 240 (1111)
..+++|++|++++|.++.+ |..+..+++|++|+|++|.++.++ .+..+++|+.|+|++|.|+.++.. ...+++|+.
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 3456888888888888866 446788888888888888888865 477888888888888888877763 445788888
Q ss_pred eeccCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccch
Q 001271 241 LVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYR 302 (1111)
Q Consensus 241 L~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r 302 (1111)
|+|++|.++.+ ..+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|++.|.+...
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCccCCCCcH
Confidence 88888888876 367888888888888888888775 56788888888888888888876543
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=1.2e-22 Score=222.23 Aligned_cols=225 Identities=17% Similarity=0.110 Sum_probs=154.1
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCcc--chhhHhhhhhhhhhhhccCCCccchhhhccccccccCC
Q 001271 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS--AAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (1111)
Q Consensus 87 ~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~--~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l 164 (1111)
++|+.|+|++|.+....+..|..+++|++|+|++|.++.. .+..+..+++|..+++.+|.+..++..+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~---------- 97 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF---------- 97 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEE----------
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhc----------
Confidence 5677777777777744444567777777777777777643 2556666777777777777665544321
Q ss_pred CCCCCccEEEccCCccccchh--hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCC--ccccccccccc
Q 001271 165 PQWNRLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRS--IAAFSEVSCHI 238 (1111)
Q Consensus 165 ~~L~~L~~L~Ls~N~LssLP~--~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~--L~~l~~~L~sL 238 (1111)
..+++|++|++++|.++.++. .+..+++|++|+|++|.+..+. .+..+++|++|+|++|.++. ++.....+++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 235677788888887776654 6777778888888888776542 46677778888888887765 44455556778
Q ss_pred eEeeccCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhc-CCCCee
Q 001271 239 VKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYF-AHPAKL 315 (1111)
Q Consensus 239 ~~L~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l-~~L~~L 315 (1111)
+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.... ...+..+ +.++.+
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~~~~~L~~L 253 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSK---KQELQHFPSSLAFL 253 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCS---SSSCCCCCTTCCEE
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcccC---HHHHHhhhccCCEE
Confidence 8888888877776 256777788888888888777664 45677778888888888776432 1223334 367778
Q ss_pred ecCCCcCChh
Q 001271 316 KVDGKEISTR 325 (1111)
Q Consensus 316 ~LdgN~It~~ 325 (1111)
+|++|++.+.
T Consensus 254 ~L~~N~~~~~ 263 (306)
T 2z66_A 254 NLTQNDFACT 263 (306)
T ss_dssp ECTTCCEECS
T ss_pred EccCCCeecc
Confidence 8888877654
No 35
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=2.8e-22 Score=222.02 Aligned_cols=235 Identities=17% Similarity=0.168 Sum_probs=189.1
Q ss_pred ccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCC
Q 001271 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST 147 (1111)
Q Consensus 68 LdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L 147 (1111)
.++..+.....+...+..+++|+.|+|++|.+.+..|..|..+++|++|+|++|.+++..+ +..+++|..+++.+|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 4566655555555677778889999999999988777888899999999999999987554 78888888888888876
Q ss_pred ccchhhhccccccccCCCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCC
Q 001271 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNL 225 (1111)
Q Consensus 148 ~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~L 225 (1111)
..++. .++|+.|++++|.|+.++.. .+++|+.|+|++|.|+.++ .+..+++|++|+|++|.|
T Consensus 93 ~~l~~--------------~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 93 QELLV--------------GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp EEEEE--------------CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred ccccC--------------CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 55432 35899999999999977643 4788999999999999874 677889999999999999
Q ss_pred CCcccc--ccccccceEeeccCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchh
Q 001271 226 RSIAAF--SEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRA 303 (1111)
Q Consensus 226 t~L~~l--~~~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~ 303 (1111)
+.+++. ...+++|++|+|++|.|+.++....+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|++...+
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~l~---- 230 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIE---- 230 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEEC----
T ss_pred CcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchh--hhcccCcccEEECcCCcccchh----
Confidence 886543 23478999999999999998777778999999999999998874 4788899999999999997433
Q ss_pred hHhhhcCCCCeeecCCCcCChhH
Q 001271 304 QVFSYFAHPAKLKVDGKEISTRE 326 (1111)
Q Consensus 304 ~if~~l~~L~~L~LdgN~It~~E 326 (1111)
..+..++.|+.++|++|++.+..
T Consensus 231 ~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp TTCCCCTTCCEEECTTCCCBHHH
T ss_pred hHhhcCCCCCEEEccCCCccCcC
Confidence 23566788999999999998543
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=5.7e-22 Score=236.26 Aligned_cols=296 Identities=16% Similarity=0.088 Sum_probs=159.8
Q ss_pred cccCCcEEEecCCCccchHH-hhhhcccchhhccCC-Cccc---------cccccccCCCCCcchhHHHHhcCCCCCcEE
Q 001271 24 LIEGSIVLKLNPAGLHYVQS-RLEALRELERLLAGA-PLDY---------LRAYVSDLGDHRALEQLRRILKLLTSLKVV 92 (1111)
Q Consensus 24 lL~~lk~L~Ls~~~L~~Lp~-~L~~L~~Le~L~~~~-~l~~---------Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~L 92 (1111)
+...++.|+|+.+.+..++. .+..+.+|+.+.... .+.. -.+..+++++|......|..|.++++|++|
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 34556666666666665554 344444444433211 1110 112345666665444446666666666666
Q ss_pred EccCCCCCCCCCccCCCCCCCCEEEeeCCCCCc-cchhhHhhhhhhhhhhhccCCCccchhhhccc--------------
Q 001271 93 SALPPPARDPTPLSLLPFCRLKVLELRGCDLST-SAAKGLLELRHTLEKIICHNSTNALRHVFASR-------------- 157 (1111)
Q Consensus 93 dLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~-~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~-------------- 157 (1111)
+|++|.+.+..|..|+.+++|++|+|++|.+++ .+|..+.++++|..+.+.+|.+..+.......
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 666666665555556666666666666666654 34556666666666666665544322110000
Q ss_pred ---cc---------------------------------------------------------------------------
Q 001271 158 ---IV--------------------------------------------------------------------------- 159 (1111)
Q Consensus 158 ---I~--------------------------------------------------------------------------- 159 (1111)
+.
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 00
Q ss_pred -------cccCCCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCC---------------------cCC
Q 001271 160 -------EIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDN---------------------LRK 211 (1111)
Q Consensus 160 -------~L~~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~---------------------L~~ 211 (1111)
.+..+..+++|+.|++++|.+..+| .+..+++|+.|++++|.+..++. +..
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~ 348 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVA 348 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCC
T ss_pred ccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhcc
Confidence 0000122344455555555555444 44555555555555555544443 344
Q ss_pred CCCCcEEECCCCCCCCc---cccccccccceEeeccCCccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcE
Q 001271 212 CVNLKHLDLGFNNLRSI---AAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLN 287 (1111)
Q Consensus 212 L~sL~~LdLS~N~Lt~L---~~l~~~L~sL~~L~LS~N~Lt~L~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~ 287 (1111)
+++|++|++++|.++.+ +.....+++|+.|+|++|.++.++ .+..+++|+.|+|++|.+...++...+..+++|+.
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 55566666666665554 223334566666777666666653 56666777777777777666554345666677777
Q ss_pred EEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCC
Q 001271 288 LWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (1111)
Q Consensus 288 L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It 323 (1111)
|++++|.+... .+..+..++.|+.++|.+|.+.
T Consensus 429 L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~ 461 (606)
T 3vq2_A 429 LDISYTNTKID---FDGIFLGLTSLNTLKMAGNSFK 461 (606)
T ss_dssp EECTTSCCEEC---CTTTTTTCTTCCEEECTTCEEG
T ss_pred EECcCCCCCcc---chhhhcCCCCCCEEECCCCcCC
Confidence 77777766532 1233455666677777766654
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=6e-22 Score=219.87 Aligned_cols=236 Identities=16% Similarity=0.135 Sum_probs=181.9
Q ss_pred cccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCC
Q 001271 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (1111)
Q Consensus 67 vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~ 146 (1111)
.++++++. +..+|..+ .++|+.|+|++|.+.+..|..|..+++|++|+|++|.+++..|..+..+++|..+.+.+|.
T Consensus 37 ~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 37 VVQCSDLG-LKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp EEECCSSC-CSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred EEECCCCC-ccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 35555544 34555533 3688888888888887777788888889999998888888778888888888888888887
Q ss_pred CccchhhhccccccccCCCCCCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCC--C--CCcCCCCCCcEEECC
Q 001271 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK--V--DNLRKCVNLKHLDLG 221 (1111)
Q Consensus 147 L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~--L--~~L~~L~sL~~LdLS 221 (1111)
+..++... .++|++|++++|.++.+|. .+..+++|+.|+|++|.++. + ..+..+ +|+.|+++
T Consensus 114 l~~l~~~~------------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 114 LVEIPPNL------------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CCSCCSSC------------CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CCccCccc------------cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 76555422 1578888888888887776 57888888999998888863 2 356666 88888888
Q ss_pred CCCCCCccccccccccceEeeccCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001271 222 FNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (1111)
Q Consensus 222 ~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~ 299 (1111)
+|.++.++.... ++|+.|+|++|.++.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.+...+
T Consensus 181 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp 257 (332)
T 2ft3_A 181 EAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLSRVP 257 (332)
T ss_dssp SSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCCBCC
T ss_pred CCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCeecC
Confidence 888888776432 68888888888888873 68888888889998888888775 56788888889999888887443
Q ss_pred cchhhHhhhcCCCCeeecCCCcCChh
Q 001271 300 WYRAQVFSYFAHPAKLKVDGKEISTR 325 (1111)
Q Consensus 300 ~~r~~if~~l~~L~~L~LdgN~It~~ 325 (1111)
. .+..++.|+.++|.+|.++..
T Consensus 258 ~----~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 258 A----GLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp T----TGGGCTTCCEEECCSSCCCBC
T ss_pred h----hhhcCccCCEEECCCCCCCcc
Confidence 2 255678888888888888754
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=4.2e-21 Score=228.14 Aligned_cols=158 Identities=21% Similarity=0.176 Sum_probs=118.0
Q ss_pred CCCCCccEEEccCCcccc-chhhhcCCCCCcEEEccCCCCCCCC----CcCCCCCCcEEECCCCCCCC-cccc-cccccc
Q 001271 165 PQWNRLSFVSCSCNRLVI-MDESLQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRS-IAAF-SEVSCH 237 (1111)
Q Consensus 165 ~~L~~L~~L~Ls~N~Lss-LP~~L~~L~nL~~LdLS~N~Ls~L~----~L~~L~sL~~LdLS~N~Lt~-L~~l-~~~L~s 237 (1111)
..+++|++|++++|.++. +|..+..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.++. ++.. ...+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 345677777777777774 5667777778888888888777653 36777788888888888776 5542 344677
Q ss_pred ceEeeccCCccCCcccCCCC-CCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeee
Q 001271 238 IVKLVLRNNALTTLRGIENL-KSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLK 316 (1111)
Q Consensus 238 L~~L~LS~N~Lt~L~~L~~L-~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~ 316 (1111)
|+.|+|++|.|+... +..+ ++|+.|+|++|+|+.+|. .+..+++|+.|+|++|.++..+. ..+..++.|+.++
T Consensus 430 L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L~ 503 (562)
T 3a79_B 430 ILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIMSIPK--DVTHLQALQELNVASNQLKSVPD---GVFDRLTSLQYIW 503 (562)
T ss_dssp CCEEECCSSCCCGGG-GSSCCTTCSEEECCSSCCCCCCT--TTTSSCCCSEEECCSSCCCCCCT---TSTTTCTTCCCEE
T ss_pred CCEEECCCCCCCcch-hhhhcCcCCEEECCCCcCcccCh--hhcCCCCCCEEECCCCCCCCCCH---HHHhcCCCCCEEE
Confidence 888888888776531 1222 689999999999999884 45599999999999999986543 2467788999999
Q ss_pred cCCCcCChhHHH
Q 001271 317 VDGKEISTRELW 328 (1111)
Q Consensus 317 LdgN~It~~E~~ 328 (1111)
|.+|++.+....
T Consensus 504 l~~N~~~c~c~~ 515 (562)
T 3a79_B 504 LHDNPWDCTCPG 515 (562)
T ss_dssp CCSCCBCCCHHH
T ss_pred ecCCCcCCCcch
Confidence 999999876543
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=9e-22 Score=238.04 Aligned_cols=269 Identities=16% Similarity=0.147 Sum_probs=210.9
Q ss_pred cccCCcEEEecCCCccchHHh-hhhcccchhhccCCCc---c-----------ccccccccCCCCCcchhHHHHhcCCCC
Q 001271 24 LIEGSIVLKLNPAGLHYVQSR-LEALRELERLLAGAPL---D-----------YLRAYVSDLGDHRALEQLRRILKLLTS 88 (1111)
Q Consensus 24 lL~~lk~L~Ls~~~L~~Lp~~-L~~L~~Le~L~~~~~l---~-----------~Lrl~vLdLs~n~~L~~Lp~~L~~L~n 88 (1111)
.+..++.|+++.+.+..++.. +..+.+|+.+...... . .-.+..+++++|+..+..|..+..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 356788888888888876543 4556666555432110 0 012345677777766666777888888
Q ss_pred CcEEEccCCCCCCCCC-ccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCC
Q 001271 89 LKVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW 167 (1111)
Q Consensus 89 Lk~LdLs~N~Is~~iP-~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L 167 (1111)
|+.|+|++|.+.+.+| ..|..+++|++|+|++|.+++..+..+..++.|..+.+.+|.+..+... + ..+..+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-p------~~~~~l 479 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS-P------SPFQPL 479 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS-S------CTTTTC
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC-C------cccccC
Confidence 8888888888876554 5778888888888888888877777888888888888888866433211 1 124567
Q ss_pred CCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC----------CcCCCCCCcEEECCCCCCCCcccc-cccc
Q 001271 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD----------NLRKCVNLKHLDLGFNNLRSIAAF-SEVS 235 (1111)
Q Consensus 168 ~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~----------~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L 235 (1111)
++|+.|+|++|+|+.+|. .+..+++|+.|+|++|.++.++ .+..+++|+.|+|++|.|+.++.. +..+
T Consensus 480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 559 (680)
T 1ziw_A 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccc
Confidence 899999999999998876 6899999999999999998752 378899999999999999998864 5568
Q ss_pred ccceEeeccCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhc-CCCCCcEEEecCCCCCCCcc
Q 001271 236 CHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLA-SLPYLLNLWLEGNPLCCSRW 300 (1111)
Q Consensus 236 ~sL~~L~LS~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~-~L~~L~~L~LsgNpLs~~~~ 300 (1111)
++|+.|+|++|+|+.++ .+..+++|+.|+|++|+|+.+++ ..+. .+++|+.|+|++||+.|.|.
T Consensus 560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK-KVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH-HHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred cCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh-hHhcccccccCEEEccCCCcccCCc
Confidence 99999999999999985 47899999999999999999886 5555 78999999999999999875
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=2.7e-21 Score=227.50 Aligned_cols=289 Identities=18% Similarity=0.181 Sum_probs=185.6
Q ss_pred cccCCcEEEecCCCccchH-HhhhhcccchhhccCC-Ccc---------ccccccccCCCCCcchhHHHHhcCCCCCcEE
Q 001271 24 LIEGSIVLKLNPAGLHYVQ-SRLEALRELERLLAGA-PLD---------YLRAYVSDLGDHRALEQLRRILKLLTSLKVV 92 (1111)
Q Consensus 24 lL~~lk~L~Ls~~~L~~Lp-~~L~~L~~Le~L~~~~-~l~---------~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~L 92 (1111)
+...++.|+|+.+.+..++ ..+..+.+|+.+.... .+. .-.+..+++++|...+..+..+.++++|++|
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 4466788888888887764 4456666665543321 111 1123467888887766667778899999999
Q ss_pred EccCCCCCC-CCCccCCCCCCCCEEEeeCCC-CCccchhhHhhhhhhhhhhhccCCCccchh------------------
Q 001271 93 SALPPPARD-PTPLSLLPFCRLKVLELRGCD-LSTSAAKGLLELRHTLEKIICHNSTNALRH------------------ 152 (1111)
Q Consensus 93 dLs~N~Is~-~iP~sLs~L~nL~~LdLS~N~-Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~------------------ 152 (1111)
+|++|.+.+ ..|..|..+++|++|+|++|. +....+..+..+++|..+.+.+|.+.....
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999998876 356677888888888888887 333333566666666666666665433110
Q ss_pred ------hhcc-------------ccccc----------------------------------------------------
Q 001271 153 ------VFAS-------------RIVEI---------------------------------------------------- 161 (1111)
Q Consensus 153 ------l~~~-------------~I~~L---------------------------------------------------- 161 (1111)
.+.. .+..+
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 0000 00000
Q ss_pred --------------cCCC--------------------------CCCCccEEEccCCccccchhhh-cCCCCCcEEEccC
Q 001271 162 --------------KDSP--------------------------QWNRLSFVSCSCNRLVIMDESL-QLLPAVETLDLSR 200 (1111)
Q Consensus 162 --------------~~l~--------------------------~L~~L~~L~Ls~N~LssLP~~L-~~L~nL~~LdLS~ 200 (1111)
..++ .+.+|+.|++++|.+..+|..+ ..+++|+.|+|++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCS
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccC
Confidence 0000 0134666666666666677655 4688888888888
Q ss_pred CCCCCC-----CCcCCCCCCcEEECCCCCCCCccc---cccccccceEeeccCCccCCcc-cCCCCCCCCEEEccCCCCC
Q 001271 201 NKFAKV-----DNLRKCVNLKHLDLGFNNLRSIAA---FSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIIS 271 (1111)
Q Consensus 201 N~Ls~L-----~~L~~L~sL~~LdLS~N~Lt~L~~---l~~~L~sL~~L~LS~N~Lt~L~-~L~~L~sL~~LdLS~N~Is 271 (1111)
|.+.+. ..+..+++|+.|+|++|.|+.++. ....+++|+.|+|++|+|+.+| .+..+++|+.|+|++|.|+
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc
Confidence 888762 236778888888888888887753 3445788888888888888875 5777888888888888888
Q ss_pred CCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCC
Q 001271 272 TFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (1111)
Q Consensus 272 ~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It 323 (1111)
.++. .+ .++|+.|+|++|.++... ..++.|+.++|++|.++
T Consensus 424 ~l~~--~~--~~~L~~L~Ls~N~l~~~~-------~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 424 VVKT--CI--PQTLEVLDVSNNNLDSFS-------LFLPRLQELYISRNKLK 464 (549)
T ss_dssp CCCT--TS--CTTCSEEECCSSCCSCCC-------CCCTTCCEEECCSSCCS
T ss_pred cccc--hh--cCCceEEECCCCChhhhc-------ccCChhcEEECCCCccC
Confidence 7663 11 245666666666554321 23456666666666665
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=4.1e-22 Score=223.02 Aligned_cols=272 Identities=16% Similarity=0.120 Sum_probs=218.2
Q ss_pred cEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCC
Q 001271 29 IVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLL 108 (1111)
Q Consensus 29 k~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs 108 (1111)
...+++.+++..+|..+.. + +..+++++|+.....+..+.++++|+.|+|++|.+++..|..|.
T Consensus 34 ~~c~~~~~~l~~iP~~~~~--~--------------L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLTE--A--------------VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97 (353)
T ss_dssp SEEECCSTTCSSCCTTCCT--T--------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred eEeeCCCCCcccccccccc--c--------------CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC
Confidence 4578889999988875431 1 22356777764443344789999999999999999988888999
Q ss_pred CCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCC-ccccch-hh
Q 001271 109 PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN-RLVIMD-ES 186 (1111)
Q Consensus 109 ~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N-~LssLP-~~ 186 (1111)
.+++|++|+|++|.+++..+..+..+++|..+.+.+|.+..++. ...+..+++|++|++++| .++.++ ..
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--------~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 169 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE--------TSLFSHLTKLQILRVGNMDTFTKIQRKD 169 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS--------SCSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc--------hhhhccCCCCcEEECCCCccccccCHHH
Confidence 99999999999999998766678999999999999998776543 012346789999999999 578775 57
Q ss_pred hcCCCCCcEEEccCCCCCCC--CCcCCCCCCcEEECCCCCCCCcccccc-ccccceEeeccCCccCCcc-----cCCCCC
Q 001271 187 LQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAFSE-VSCHIVKLVLRNNALTTLR-----GIENLK 258 (1111)
Q Consensus 187 L~~L~nL~~LdLS~N~Ls~L--~~L~~L~sL~~LdLS~N~Lt~L~~l~~-~L~sL~~L~LS~N~Lt~L~-----~L~~L~ 258 (1111)
+..+++|+.|+|++|.+..+ ..+..+++|++|++++|.++.++.... .+++|+.|+|++|.++.++ ......
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccc
Confidence 89999999999999999986 378899999999999999988876433 4789999999999998863 234567
Q ss_pred CCCEEEccCCCCCCCch---hhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChhHH
Q 001271 259 SLEGLDISYNIISTFSE---LEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (1111)
Q Consensus 259 sL~~LdLS~N~Is~l~~---l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E~ 327 (1111)
.++.++|++|.+.+... ...+..+++|+.|+|++|.++..+ ..+|..++.|+.++|++|++.+...
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~---~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccC---HHHHhcCCCCCEEEeeCCCccCcCC
Confidence 89999999999876211 146788999999999999998543 3446778899999999999987653
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=1.7e-21 Score=213.19 Aligned_cols=247 Identities=21% Similarity=0.219 Sum_probs=201.2
Q ss_pred cEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHH-HhcCCCCCcEEEccCCCCCCC--CCc
Q 001271 29 IVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRR-ILKLLTSLKVVSALPPPARDP--TPL 105 (1111)
Q Consensus 29 k~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~-~L~~L~nLk~LdLs~N~Is~~--iP~ 105 (1111)
..++.+.+++..+|..+. .+ +..+++++|+.. .+|. .|.++++|++|+|++|.+... .|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~--------------l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 72 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SS--------------ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TT--------------CCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEH
T ss_pred CEEEcCCCCcccCCCCCC--CC--------------CCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCccc
Confidence 467888888888876432 22 234667777644 5554 579999999999999999743 356
Q ss_pred cCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccccc-h
Q 001271 106 SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM-D 184 (1111)
Q Consensus 106 sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssL-P 184 (1111)
.+..+++|++|+|++|.++. +|..+..+++|..+.+.+|.+..+.. ...+..+++|++|++++|.+..+ |
T Consensus 73 ~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE--------FSVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp HHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTT--------TTTTTTCTTCCEEECTTSCCEECST
T ss_pred ccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCccccccc--------chhhhhccCCCEEECCCCcCCccch
Confidence 67789999999999999976 66678889999999999997765543 12245678999999999999954 4
Q ss_pred hhhcCCCCCcEEEccCCCCCC--C-CCcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccCCccCCcc--cCCCCC
Q 001271 185 ESLQLLPAVETLDLSRNKFAK--V-DNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLK 258 (1111)
Q Consensus 185 ~~L~~L~nL~~LdLS~N~Ls~--L-~~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~N~Lt~L~--~L~~L~ 258 (1111)
..+..+++|+.|+|++|.+.. + ..+..+++|+.|+|++|.|+.+++ ....+++|+.|+|++|.++.++ .+..++
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 578899999999999999986 3 478899999999999999998754 4556899999999999999984 588999
Q ss_pred CCCEEEccCCCCCCCchhhhhcCCC-CCcEEEecCCCCCCCccch
Q 001271 259 SLEGLDISYNIISTFSELEFLASLP-YLLNLWLEGNPLCCSRWYR 302 (1111)
Q Consensus 259 sL~~LdLS~N~Is~l~~l~~L~~L~-~L~~L~LsgNpLs~~~~~r 302 (1111)
+|+.|+|++|.|+...+ ..+..++ +|+.|+|++|++.|.+...
T Consensus 224 ~L~~L~L~~N~l~~~~~-~~~~~~~~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp TCCEEECTTSCCCBCSS-SSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred cCCEeECCCCCCcccCH-HHHHhhhccCCEEEccCCCeecccChH
Confidence 99999999999998765 5677885 9999999999999886543
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.1e-21 Score=233.85 Aligned_cols=267 Identities=15% Similarity=0.106 Sum_probs=213.7
Q ss_pred ccCCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCC
Q 001271 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP 104 (1111)
+..++.|++..+.+..+| .+..+.+|+ .+++.+|.. +.+| .+ .+++|+.|++++|...+..
T Consensus 284 l~~L~~L~l~~~~~~~l~-~l~~~~~L~--------------~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLE-DVPKHFKWQ--------------SLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp GTTCSEEEEESCCCCCCC-CCCTTCCCS--------------EEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-
T ss_pred CCCCCEEEecCccchhhh-hccccccCC--------------EEEcccccC-cccc-cC-CCCccceeeccCCcCccch-
Confidence 455677777777776666 344433333 355666665 6677 34 8999999999999655433
Q ss_pred ccCCCCCCCCEEEeeCCCCCccc--hhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcccc
Q 001271 105 LSLLPFCRLKVLELRGCDLSTSA--AKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI 182 (1111)
Q Consensus 105 ~sLs~L~nL~~LdLS~N~Ls~~~--P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Lss 182 (1111)
.+..+++|++|+|++|.+++.. |..+..+++|..+.+.+|.+..++. .+..+++|+.|++++|.+..
T Consensus 345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----------~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA----------NFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp -CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECC----------CCTTCTTCCEEECTTSEEES
T ss_pred -hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchh----------hccCCCCCCeeECCCCccCC
Confidence 6778999999999999998753 7888999999999999998666542 23457899999999999996
Q ss_pred chh--hhcCCCCCcEEEccCCCCCCC--CCcCCCCCCcEEECCCCCCCC--ccccccccccceEeeccCCccCCcc--cC
Q 001271 183 MDE--SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRS--IAAFSEVSCHIVKLVLRNNALTTLR--GI 254 (1111)
Q Consensus 183 LP~--~L~~L~nL~~LdLS~N~Ls~L--~~L~~L~sL~~LdLS~N~Lt~--L~~l~~~L~sL~~L~LS~N~Lt~L~--~L 254 (1111)
++. .+..+++|+.|+|++|.+... ..+..+++|++|++++|.+++ ++.....+++|+.|+|++|.++.++ .+
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 654 788999999999999999874 368899999999999999986 4556667899999999999999873 58
Q ss_pred CCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcC-CCCeeecCCCcCChhH
Q 001271 255 ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA-HPAKLKVDGKEISTRE 326 (1111)
Q Consensus 255 ~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~-~L~~L~LdgN~It~~E 326 (1111)
..+++|+.|+|++|+++++.+ ..+..+++|+.|+|++|+++..+.. +..++ .++.++|++|++.+..
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~p~~----~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRIETSKGI----LQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSCCCCEESC----GGGSCTTCCEEECCSCCCCCSS
T ss_pred cccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCcCcccCHh----HhhhcccCcEEEccCCCcccCC
Confidence 899999999999999999854 6789999999999999999855432 45555 5999999999998654
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=4.8e-21 Score=224.39 Aligned_cols=86 Identities=29% Similarity=0.252 Sum_probs=45.8
Q ss_pred CCCCCCcEEECCCCCCCC-ccccccccccceEeeccCCccCCcc----cCCCCCCCCEEEccCCCCCC-CchhhhhcCCC
Q 001271 210 RKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLRNNALTTLR----GIENLKSLEGLDISYNIIST-FSELEFLASLP 283 (1111)
Q Consensus 210 ~~L~sL~~LdLS~N~Lt~-L~~l~~~L~sL~~L~LS~N~Lt~L~----~L~~L~sL~~LdLS~N~Is~-l~~l~~L~~L~ 283 (1111)
..+++|++|++++|.+++ ++.....+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.+.. ++. ..+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-GDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-CSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc-chhccCc
Confidence 455556666666665555 2233334555666666666655432 25555566666666666555 442 2344555
Q ss_pred CCcEEEecCCCCC
Q 001271 284 YLLNLWLEGNPLC 296 (1111)
Q Consensus 284 ~L~~L~LsgNpLs 296 (1111)
+|+.|+|++|.++
T Consensus 400 ~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 400 SLLSLNMSSNILT 412 (520)
T ss_dssp TCCEEECCSSCCC
T ss_pred cCCEEECcCCCCC
Confidence 5555555555553
No 45
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=6.1e-22 Score=218.75 Aligned_cols=243 Identities=18% Similarity=0.139 Sum_probs=142.6
Q ss_pred CCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCc-chhHHHHhc-------CCCCCcEEEccCCC
Q 001271 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRA-LEQLRRILK-------LLTSLKVVSALPPP 98 (1111)
Q Consensus 27 ~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~-L~~Lp~~L~-------~L~nLk~LdLs~N~ 98 (1111)
+++.|++..+.+ .+|..+... |+. +++++|.. ...+|..+. ++++|++|+|++|.
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~--------------L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 106 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKS--------------LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHH--------------CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred CceeEeeccccc-ccHHHHHHH--Hhh--------------cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence 356666777777 667655433 322 33444433 123343333 79999999999999
Q ss_pred CCCCCCccC--CCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEcc
Q 001271 99 ARDPTPLSL--LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCS 176 (1111)
Q Consensus 99 Is~~iP~sL--s~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls 176 (1111)
+++.+|..+ ..+++|++|+|++|.+++. |..+..+... .+++|++|+|+
T Consensus 107 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~----------------------------~~~~L~~L~L~ 157 (312)
T 1wwl_A 107 VTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQW----------------------------LKPGLKVLSIA 157 (312)
T ss_dssp CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT----------------------------CCTTCCEEEEE
T ss_pred ccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHh----------------------------hcCCCcEEEee
Confidence 999899876 8999999999999999986 7777776210 01355566666
Q ss_pred CCccccch-hhhcCCCCCcEEEccCCCCCCC----CC--cCCCCCCcEEECCCCCCCCcccc----ccccccceEeeccC
Q 001271 177 CNRLVIMD-ESLQLLPAVETLDLSRNKFAKV----DN--LRKCVNLKHLDLGFNNLRSIAAF----SEVSCHIVKLVLRN 245 (1111)
Q Consensus 177 ~N~LssLP-~~L~~L~nL~~LdLS~N~Ls~L----~~--L~~L~sL~~LdLS~N~Lt~L~~l----~~~L~sL~~L~LS~ 245 (1111)
+|+|+.++ ..+..+++|++|+|++|++.+. +. +..+++|++|+|++|.|+.++.. ...+++|+.|+|++
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237 (312)
T ss_dssp SCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred CCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence 66655444 3555566666666666654431 12 25555666666666655543321 12235566666666
Q ss_pred CccCCc---ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcC
Q 001271 246 NALTTL---RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (1111)
Q Consensus 246 N~Lt~L---~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~I 322 (1111)
|.|+.. +.+..+++|+.|+|++|.|+.+|. .+. ++|+.|+|++|+|+..+. +..++.|+.++|++|++
T Consensus 238 N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~--~~L~~L~Ls~N~l~~~p~-----~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--GLP--AKLSVLDLSYNRLDRNPS-----PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS--SCC--SEEEEEECCSSCCCSCCC-----TTTSCEEEEEECTTCTT
T ss_pred CcCCcccchhhhhhcCCCCEEECCCCccChhhh--hcc--CCceEEECCCCCCCCChh-----HhhCCCCCEEeccCCCC
Confidence 655553 233445556666666666655542 222 556666666666554321 33445555566666655
Q ss_pred Ch
Q 001271 323 ST 324 (1111)
Q Consensus 323 t~ 324 (1111)
+.
T Consensus 309 ~~ 310 (312)
T 1wwl_A 309 LD 310 (312)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=228.80 Aligned_cols=154 Identities=20% Similarity=0.178 Sum_probs=90.9
Q ss_pred CCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCC---------------------cCCCCCCcEEECCCCC
Q 001271 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDN---------------------LRKCVNLKHLDLGFNN 224 (1111)
Q Consensus 166 ~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~---------------------L~~L~sL~~LdLS~N~ 224 (1111)
.+++|+.|++++|.++.+|..+..+ +|+.|++++|.+..++. ...+++|+.|++++|.
T Consensus 280 ~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred CcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 3567888888888888777776666 66777776666655432 1345666666666666
Q ss_pred CCCcc---ccccccccceEeeccCCccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001271 225 LRSIA---AFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (1111)
Q Consensus 225 Lt~L~---~l~~~L~sL~~L~LS~N~Lt~L~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~ 300 (1111)
++.+. .....+++|+.|+|++|.++.++ .+..+++|+.|++++|.+...++...+..+++|+.|++++|.+...
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 436 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-- 436 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC--
T ss_pred cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc--
Confidence 65542 22333556666666666665552 3555666666666666665544333455666666666666665432
Q ss_pred chhhHhhhcCCCCeeecCCCcCC
Q 001271 301 YRAQVFSYFAHPAKLKVDGKEIS 323 (1111)
Q Consensus 301 ~r~~if~~l~~L~~L~LdgN~It 323 (1111)
.+..+..++.|+.++|.+|.+.
T Consensus 437 -~~~~~~~l~~L~~L~l~~n~l~ 458 (570)
T 2z63_A 437 -FNGIFNGLSSLEVLKMAGNSFQ 458 (570)
T ss_dssp -CTTTTTTCTTCCEEECTTCEEG
T ss_pred -chhhhhcCCcCcEEECcCCcCc
Confidence 1223444555666666666553
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=1.5e-20 Score=206.80 Aligned_cols=202 Identities=24% Similarity=0.196 Sum_probs=173.6
Q ss_pred hcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhcccccccc
Q 001271 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (1111)
Q Consensus 83 L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~ 162 (1111)
+.++++|+.|++++|.++ .+|..+. ++|+.|+|++|.|++..+..+..+++|..+.+.+|.+..++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--------- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC---------
Confidence 567889999999999998 5666554 7899999999999988888899999999999999887665432
Q ss_pred CCCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccccc-cccccce
Q 001271 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFS-EVSCHIV 239 (1111)
Q Consensus 163 ~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l~-~~L~sL~ 239 (1111)
..+++|++|+|++|+|+.+|..+..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|+|+.+++.. ..+++|+
T Consensus 74 --~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 74 --GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp --SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred --CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 3567899999999999999988899999999999999999875 5889999999999999999887643 4578999
Q ss_pred EeeccCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001271 240 KLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (1111)
Q Consensus 240 ~L~LS~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~ 300 (1111)
.|+|++|+|+.++ .+..+++|+.|+|++|+|+.+| ..+..+++|+.|+|++||+.|.+.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip--~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP--KGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCCCSEEECCSCCBCCSGG
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC--hhhcccccCCeEEeCCCCccCcCc
Confidence 9999999999985 4678999999999999999988 456777899999999999998864
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=2.8e-22 Score=221.94 Aligned_cols=211 Identities=16% Similarity=0.162 Sum_probs=180.5
Q ss_pred ccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccC
Q 001271 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (1111)
Q Consensus 66 ~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N 145 (1111)
..+++++|......|..+..+++|++|+|++|.+++..| |..+++|++|+|++|.|++.. ..+.+..+.+.+|
T Consensus 37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n 109 (317)
T 3o53_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANN 109 (317)
T ss_dssp SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSS
T ss_pred CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCC
Confidence 347788887777677899999999999999999986554 899999999999999998643 2367888889999
Q ss_pred CCccchhhhccccccccCCCCCCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--Cc-CCCCCCcEEECC
Q 001271 146 STNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NL-RKCVNLKHLDLG 221 (1111)
Q Consensus 146 ~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L-~~L~sL~~LdLS 221 (1111)
.+..+.. ..+++|+.|++++|.++.++. .+..+++|+.|+|++|.|+.++ .+ ..+++|++|+|+
T Consensus 110 ~l~~~~~------------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 110 NISRVSC------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CCSEEEE------------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred ccCCcCc------------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 8766542 125689999999999998865 7888999999999999999853 44 478999999999
Q ss_pred CCCCCCccccccccccceEeeccCCccCCc-ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001271 222 FNNLRSIAAFSEVSCHIVKLVLRNNALTTL-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (1111)
Q Consensus 222 ~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L-~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~ 298 (1111)
+|.|+.++.... +++|+.|+|++|.|+.+ +.+..+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|++.|.
T Consensus 178 ~N~l~~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 178 YNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp TSCCCEEECCCC-CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTTCCCBHH
T ss_pred CCcCcccccccc-cccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh--hHhhcCCCCCEEEccCCCccCc
Confidence 999998866543 79999999999999998 46888999999999999999988 4688999999999999999854
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=1.5e-20 Score=203.87 Aligned_cols=222 Identities=17% Similarity=0.161 Sum_probs=190.3
Q ss_pred cEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCC
Q 001271 90 KVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNR 169 (1111)
Q Consensus 90 k~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~ 169 (1111)
+.++.+++.++ .+|..+ .++|++|+|++|.++...+..+..+++|..+.+.+|.+..+... .+..+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------~~~~l~~ 81 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA---------AFTGLAL 81 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT---------TTTTCTT
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh---------hcCCccC
Confidence 68888898887 556544 47999999999999998878899999999999999987765321 2345789
Q ss_pred ccEEEccCCc-cccc-hhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccc-ccccccceEeecc
Q 001271 170 LSFVSCSCNR-LVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLR 244 (1111)
Q Consensus 170 L~~L~Ls~N~-LssL-P~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L~LS 244 (1111)
|++|++++|. ++.+ |..+..+++|++|+|++|.++.++ .+..+++|++|+|++|.|+.+++. ...+++|+.|+|+
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence 9999999997 8877 568999999999999999999874 588999999999999999988764 4568999999999
Q ss_pred CCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcC
Q 001271 245 NNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (1111)
Q Consensus 245 ~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~I 322 (1111)
+|.|+.++ .+..+++|+.|+|++|.|+.+.+ ..+..+++|+.|+|++|.+... ....+..++.|+.++|.+|++
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSAL---PTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCC---CHHHHTTCTTCCEEECCSSCE
T ss_pred CCcccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcC---CHHHcccCcccCEEeccCCCc
Confidence 99999985 48899999999999999998854 6789999999999999999854 345577889999999999999
Q ss_pred ChhHH
Q 001271 323 STREL 327 (1111)
Q Consensus 323 t~~E~ 327 (1111)
.+...
T Consensus 238 ~c~~~ 242 (285)
T 1ozn_A 238 VCDCR 242 (285)
T ss_dssp ECSGG
T ss_pred cCCCC
Confidence 76544
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=8e-21 Score=212.20 Aligned_cols=225 Identities=14% Similarity=0.065 Sum_probs=165.8
Q ss_pred CCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCC
Q 001271 85 LLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (1111)
Q Consensus 85 ~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l 164 (1111)
..++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|..+++.+|.+..++..+
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l---------- 146 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASI---------- 146 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGG----------
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHH----------
Confidence 3577888888888887 66777777888888888888887 57777788888888888888776554432
Q ss_pred CCCCCccEEEccCCcc-ccchhhhcC---------CCCCcEEEccCCCCCCCC-CcCCCCCCcEEECCCCCCCCcccccc
Q 001271 165 PQWNRLSFVSCSCNRL-VIMDESLQL---------LPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSE 233 (1111)
Q Consensus 165 ~~L~~L~~L~Ls~N~L-ssLP~~L~~---------L~nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS~N~Lt~L~~l~~ 233 (1111)
..+++|++|+|++|++ ..+|..+.. +++|+.|+|++|.|+.++ .+..+++|++|+|++|.++.+++...
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~ 226 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGG
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhc
Confidence 2356788888888544 467765543 888888888888888775 67788888888888888888777666
Q ss_pred ccccceEeeccCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCC
Q 001271 234 VSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH 311 (1111)
Q Consensus 234 ~L~sL~~L~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~ 311 (1111)
.+++|+.|+|++|.+... ..+..+++|+.|+|++|.+....+ ..+..+++|+.|+|++|++... .+..+..++.
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~---iP~~l~~L~~ 302 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSR---LPSLIAQLPA 302 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCC---CCGGGGGSCT
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhh---ccHHHhhccC
Confidence 678888888888776654 357788888888888876655332 4577888888888888887643 2344667777
Q ss_pred CCeeecCCCcCChh
Q 001271 312 PAKLKVDGKEISTR 325 (1111)
Q Consensus 312 L~~L~LdgN~It~~ 325 (1111)
++.+.+..+.+...
T Consensus 303 L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 303 NCIILVPPHLQAQL 316 (328)
T ss_dssp TCEEECCGGGSCC-
T ss_pred ceEEeCCHHHHHHH
Confidence 88888877766544
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=3e-21 Score=227.23 Aligned_cols=217 Identities=17% Similarity=0.166 Sum_probs=172.3
Q ss_pred CCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCC
Q 001271 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSP 165 (1111)
Q Consensus 86 L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~ 165 (1111)
+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|..+++++|.+..++.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~------------- 97 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV------------- 97 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-------------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-------------
Confidence 4478888888888888777888888888888888888887555 7788888888888887655432
Q ss_pred CCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccc-c-cccccceEe
Q 001271 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-S-EVSCHIVKL 241 (1111)
Q Consensus 166 ~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l-~-~~L~sL~~L 241 (1111)
.++|+.|++++|.|+.++.. .+++|+.|+|++|.|+.+. .+..+++|+.|+|++|.|+++++. . ..+++|+.|
T Consensus 98 -~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 98 -GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp -CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred -CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 25888999999998877653 4688999999999988863 677888999999999998875542 2 257889999
Q ss_pred eccCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCc
Q 001271 242 VLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (1111)
Q Consensus 242 ~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~ 321 (1111)
+|++|.|+.++.+..+++|+.|+|++|.|+++++ .+..+++|+.|+|++|.++..+ ..+..++.|+.++|++|+
T Consensus 175 ~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~lp----~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIE----KALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp ECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEEC----TTCCCCTTCCEEECTTCC
T ss_pred ecCCCccccccccccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcCcccc----hhhccCCCCCEEEcCCCC
Confidence 9999999888777778899999999999988874 4778889999999999887533 224566788889999998
Q ss_pred CChhH
Q 001271 322 ISTRE 326 (1111)
Q Consensus 322 It~~E 326 (1111)
+.+..
T Consensus 249 l~c~~ 253 (487)
T 3oja_A 249 FHCGT 253 (487)
T ss_dssp BCHHH
T ss_pred CcCcc
Confidence 88543
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=235.58 Aligned_cols=291 Identities=18% Similarity=0.130 Sum_probs=193.5
Q ss_pred cccCCcEEEecCCCccch-HHhhhhcccchhhccCCC----------ccc-cccccccCCCCCcchhHHHHhcCCCCCcE
Q 001271 24 LIEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGAP----------LDY-LRAYVSDLGDHRALEQLRRILKLLTSLKV 91 (1111)
Q Consensus 24 lL~~lk~L~Ls~~~L~~L-p~~L~~L~~Le~L~~~~~----------l~~-Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~ 91 (1111)
+...++.|+|+.|.+..+ +..+..+.+|+.+....+ +.. -.+..++|++|......|..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 567789999999999876 455666766666544222 111 12346788888777666888899999999
Q ss_pred EEccCCCCCCCCCcc--CCCCCCCCEEEeeCCCCCccch-hhHhhhhhhhhhhhccCCCccchhhhcccc--cccc----
Q 001271 92 VSALPPPARDPTPLS--LLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKIICHNSTNALRHVFASRI--VEIK---- 162 (1111)
Q Consensus 92 LdLs~N~Is~~iP~s--Ls~L~nL~~LdLS~N~Ls~~~P-~~L~~L~~LleLlLs~N~L~sL~~l~~~~I--~~L~---- 162 (1111)
|+|++|.+.+.+|.. |.++++|++|+|++|.+++..+ ..|.++++|..+.+.+|.+..+.......+ ..+.
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999988766654 8889999999999999887554 578888888888888887654322111110 0000
Q ss_pred -----------CCCCCC------CccEEEccCCccc-cchhhh------------------------------------c
Q 001271 163 -----------DSPQWN------RLSFVSCSCNRLV-IMDESL------------------------------------Q 188 (1111)
Q Consensus 163 -----------~l~~L~------~L~~L~Ls~N~Ls-sLP~~L------------------------------------~ 188 (1111)
.+..+. .|+.|++++|.++ .+|..+ .
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 011111 3777888777654 222111 1
Q ss_pred C--CCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccCCccCCc--ccCCCCCCCC
Q 001271 189 L--LPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL--RGIENLKSLE 261 (1111)
Q Consensus 189 ~--L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~N~Lt~L--~~L~~L~sL~ 261 (1111)
. .++|+.|+|++|.+..+. .+..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|.|+.+ ..+..+++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 1 256777777777777642 56777777777777777776654 344467777777777777766 3567777777
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCC
Q 001271 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (1111)
Q Consensus 262 ~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It 323 (1111)
.|+|++|.|..+++ ..+..+++|+.|+|++|.+...+. ++.++.+.+.+|.++
T Consensus 342 ~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~--------~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 342 YIDLQKNHIAIIQD-QTFKFLEKLQTLDLRDNALTTIHF--------IPSIPDIFLSGNKLV 394 (844)
T ss_dssp EEECCSCCCCCCCS-SCSCSCCCCCEEEEETCCSCCCSS--------CCSCSEEEEESCCCC
T ss_pred EEECCCCCCCccCh-hhhcCCCCCCEEECCCCCCCcccC--------CCCcchhccCCCCcc
Confidence 77777777777664 456777777777777777764321 455666666666664
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=3e-21 Score=215.62 Aligned_cols=226 Identities=15% Similarity=0.134 Sum_probs=177.2
Q ss_pred cccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCC
Q 001271 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (1111)
Q Consensus 67 vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~ 146 (1111)
.++++++.. ..+|..+..+++|++|+|++|.+. .+|..|..+++|++|+|++|.++ .+|..+..+++|..+.+.+|+
T Consensus 85 ~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 85 ALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP 161 (328)
T ss_dssp EEEEESSCC-SSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEET
T ss_pred EEEccCCCc-hhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCC
Confidence 456666553 367777777888888888888888 77888888888888888888887 467788888888888887754
Q ss_pred C-ccchhhhccccccccCCCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC-CcCCCCCCcEEECCCCC
Q 001271 147 T-NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNN 224 (1111)
Q Consensus 147 L-~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS~N~ 224 (1111)
+ ..++..+.. ......+..+++|++|+|++|+|+.+|..+..+++|+.|+|++|.++.++ .+..+++|+.|+|++|.
T Consensus 162 ~~~~~p~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 162 ELTELPEPLAS-TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp TCCCCCSCSEE-EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCT
T ss_pred CccccChhHhh-ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCc
Confidence 2 333322111 00011123477999999999999999999999999999999999999975 78899999999999988
Q ss_pred CCC-ccccccccccceEeeccCCccCCc-c-cCCCCCCCCEEEccCCCCCC-CchhhhhcCCCCCcEEEecCCCCCCC
Q 001271 225 LRS-IAAFSEVSCHIVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIIST-FSELEFLASLPYLLNLWLEGNPLCCS 298 (1111)
Q Consensus 225 Lt~-L~~l~~~L~sL~~L~LS~N~Lt~L-~-~L~~L~sL~~LdLS~N~Is~-l~~l~~L~~L~~L~~L~LsgNpLs~~ 298 (1111)
+.+ ++.....+++|+.|+|++|.+... + .+..+++|+.|+|++|.+.+ +| ..+..+++|+.+.+..|.+...
T Consensus 241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP--~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP--SLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC--GGGGGSCTTCEEECCGGGSCC-
T ss_pred chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc--HHHhhccCceEEeCCHHHHHHH
Confidence 765 444566689999999999876654 4 68899999999999987655 55 6899999999999998877544
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=8.9e-21 Score=223.40 Aligned_cols=297 Identities=18% Similarity=0.161 Sum_probs=192.3
Q ss_pred cccCCcEEEecCCCccchHH-hhhhcccchhhccCCC-ccc---------cccccccCCCCCcchhHHH-HhcCCCCCcE
Q 001271 24 LIEGSIVLKLNPAGLHYVQS-RLEALRELERLLAGAP-LDY---------LRAYVSDLGDHRALEQLRR-ILKLLTSLKV 91 (1111)
Q Consensus 24 lL~~lk~L~Ls~~~L~~Lp~-~L~~L~~Le~L~~~~~-l~~---------Lrl~vLdLs~n~~L~~Lp~-~L~~L~nLk~ 91 (1111)
-+..++.|+|+.+.+..++. .+..+.+|+.+..... +.. -.+..+++++|+. ..++. .+.++++|++
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKE 128 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC-CCSTTCSCTTCTTCCE
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc-ccCCCccccccccccE
Confidence 36678999999999888753 4566666666543211 111 1223566776653 33333 5788899999
Q ss_pred EEccCCCCCC-CCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhh----hhhhhccCCCccchhhhc-----------
Q 001271 92 VSALPPPARD-PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHT----LEKIICHNSTNALRHVFA----------- 155 (1111)
Q Consensus 92 LdLs~N~Is~-~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~L----leLlLs~N~L~sL~~l~~----------- 155 (1111)
|+|++|.+.+ .+|..|.++++|++|+|++|.+++..|..+..+..+ ..+.+.+|.+..+....+
T Consensus 129 L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 208 (570)
T 2z63_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208 (570)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred EecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecc
Confidence 9999998886 468888889999999999999888777777777666 445555554332210000
Q ss_pred --------------------------------------------------------------------------------
Q 001271 156 -------------------------------------------------------------------------------- 155 (1111)
Q Consensus 156 -------------------------------------------------------------------------------- 155 (1111)
T Consensus 209 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ 288 (570)
T 2z63_A 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288 (570)
T ss_dssp SCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEE
T ss_pred cccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEE
Confidence
Q ss_pred ---ccccccc-------------------------------------------CCCCCCCccEEEccCCccccc---hhh
Q 001271 156 ---SRIVEIK-------------------------------------------DSPQWNRLSFVSCSCNRLVIM---DES 186 (1111)
Q Consensus 156 ---~~I~~L~-------------------------------------------~l~~L~~L~~L~Ls~N~LssL---P~~ 186 (1111)
..+..++ ....+++|+.|++++|.++.+ |..
T Consensus 289 l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 368 (570)
T 2z63_A 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368 (570)
T ss_dssp EESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHH
T ss_pred ecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccc
Confidence 0000000 002345566666666665533 334
Q ss_pred hcCCCCCcEEEccCC-----------------------CCCCC---CCcCCCCCCcEEECCCCCCCCccc-cccccccce
Q 001271 187 LQLLPAVETLDLSRN-----------------------KFAKV---DNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIV 239 (1111)
Q Consensus 187 L~~L~nL~~LdLS~N-----------------------~Ls~L---~~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~ 239 (1111)
+..+++|+.|+|++| .+..+ ..+..+++|+.|++++|.+....+ ....+++|+
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 444455555555544 44432 135566667777777776665433 334467888
Q ss_pred EeeccCCccCC--c-ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeee
Q 001271 240 KLVLRNNALTT--L-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLK 316 (1111)
Q Consensus 240 ~L~LS~N~Lt~--L-~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~ 316 (1111)
.|+|++|.++. + ..+..+++|+.|+|++|.++.+.+ ..+..+++|+.|+|++|.++..+ ...+..++.|+.++
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKSVP---DGIFDRLTSLQKIW 524 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEE
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh-hhhhcccCCCEEeCCCCcCCCCC---HHHhhcccCCcEEE
Confidence 88888888762 3 367888889999999998888754 67788899999999999887553 34466778899999
Q ss_pred cCCCcCChh
Q 001271 317 VDGKEISTR 325 (1111)
Q Consensus 317 LdgN~It~~ 325 (1111)
|.+|++.+.
T Consensus 525 l~~N~~~~~ 533 (570)
T 2z63_A 525 LHTNPWDCS 533 (570)
T ss_dssp CCSSCBCCC
T ss_pred ecCCcccCC
Confidence 999988754
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.2e-20 Score=208.88 Aligned_cols=218 Identities=17% Similarity=0.187 Sum_probs=174.9
Q ss_pred cCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccC
Q 001271 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (1111)
Q Consensus 84 ~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~ 163 (1111)
..+++|+.|++++|.+.. +| .+..+++|++|+|++|.+++..+ +..+++|..+.+.+|.+..++.
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~----------- 102 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA----------- 102 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGG-----------
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchh-----------
Confidence 357788899998888874 44 57888899999999998887544 7888888888888887665532
Q ss_pred CCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeec
Q 001271 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (1111)
Q Consensus 164 l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~L 243 (1111)
+..+++|+.|+|++|.|+.++. +..+++|+.|+|++|.++.++.+..+++|+.|+|++|.|+.+++ ...+++|+.|+|
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKA 180 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEEC
Confidence 3456789999999999998865 88999999999999999998888999999999999999998887 456789999999
Q ss_pred cCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCC
Q 001271 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (1111)
Q Consensus 244 S~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It 323 (1111)
++|.++.++.+..+++|+.|+|++|.|+++++ +..+++|+.|+|++|++++.+......+... .....++|+.+.
T Consensus 181 ~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~~--~~~~~~~g~~~~ 255 (308)
T 1h6u_A 181 DDNKISDISPLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIA 255 (308)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEEEEEECCCEECCSEEEEE--CCCBCTTSCBCC
T ss_pred CCCccCcChhhcCCCCCCEEEccCCccCcccc---ccCCCCCCEEEccCCeeecCCeeecccEecc--ceeECCCCCCCC
Confidence 99999999888899999999999999998873 7889999999999999987643322211111 134456666554
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=2.3e-21 Score=216.91 Aligned_cols=240 Identities=13% Similarity=0.134 Sum_probs=190.3
Q ss_pred cchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhh
Q 001271 75 ALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVF 154 (1111)
Q Consensus 75 ~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~ 154 (1111)
.+..+|..+ .++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|..+++.+|.+..++...
T Consensus 42 ~l~~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 119 (353)
T 2z80_A 42 SLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW 119 (353)
T ss_dssp TCSSCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred Ccccccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhH
Confidence 355666643 358999999999999777778999999999999999999888888999999999999999887765432
Q ss_pred ccccccccCCCCCCCccEEEccCCccccchh--hhcCCCCCcEEEccCC-CCCCCC--CcCCCCCCcEEECCCCCCCCcc
Q 001271 155 ASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRN-KFAKVD--NLRKCVNLKHLDLGFNNLRSIA 229 (1111)
Q Consensus 155 ~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~--~L~~L~nL~~LdLS~N-~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~ 229 (1111)
. ..+++|++|+|++|.++.+|. .+..+++|++|++++| .+..++ .+..+++|+.|++++|.++.+.
T Consensus 120 ~---------~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 120 F---------KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp H---------TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred h---------CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 1 246789999999999998887 6888999999999998 477653 6888999999999999998764
Q ss_pred -ccccccccceEeeccCCccCCcc--cCCCCCCCCEEEccCCCCCCCchh--hhhcCCCCCcEEEecCCCCCCCc-cchh
Q 001271 230 -AFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPLCCSR-WYRA 303 (1111)
Q Consensus 230 -~l~~~L~sL~~L~LS~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l--~~L~~L~~L~~L~LsgNpLs~~~-~~r~ 303 (1111)
.....+++|++|+|++|.++.++ .+..+++|+.|+|++|.++.++.. ........++.++|++|.+.... ...+
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 34556789999999999998874 345688999999999999886531 12334667889999999886431 1123
Q ss_pred hHhhhcCCCCeeecCCCcCChh
Q 001271 304 QVFSYFAHPAKLKVDGKEISTR 325 (1111)
Q Consensus 304 ~if~~l~~L~~L~LdgN~It~~ 325 (1111)
..+..++.|+.++|.+|.++..
T Consensus 271 ~~l~~l~~L~~L~Ls~N~l~~i 292 (353)
T 2z80_A 271 KLLNQISGLLELEFSRNQLKSV 292 (353)
T ss_dssp HHHHTCTTCCEEECCSSCCCCC
T ss_pred HHHhcccCCCEEECCCCCCCcc
Confidence 3467788999999999999744
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.8e-21 Score=229.12 Aligned_cols=236 Identities=17% Similarity=0.165 Sum_probs=193.0
Q ss_pred EEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCC
Q 001271 31 LKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPF 110 (1111)
Q Consensus 31 L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L 110 (1111)
+.++......+|..+..+.. ..-.+..++|++|......|..|..+++|++|+|++|.+++..| |..+
T Consensus 12 ~~~~~~~~~~l~~~l~~l~~----------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l 79 (487)
T 3oja_A 12 YKIEKVTDSSLKQALASLRQ----------SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL 79 (487)
T ss_dssp EEEESCCTTTHHHHHHTTST----------TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTC
T ss_pred eecccCchhhhHHHHHHhcc----------cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccC
Confidence 45555555667766655431 01123457888887766667789999999999999999987665 8999
Q ss_pred CCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccccch-hhhcC
Q 001271 111 CRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMD-ESLQL 189 (1111)
Q Consensus 111 ~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP-~~L~~ 189 (1111)
++|++|+|++|.|++..+ .++|..+.+.+|.+..+... .+++|+.|+|++|.|+.++ ..+..
T Consensus 80 ~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~------------~l~~L~~L~L~~N~l~~~~~~~~~~ 142 (487)
T 3oja_A 80 STLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS------------RGQGKKNIYLANNKITMLRDLDEGC 142 (487)
T ss_dssp TTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC------------CCSSCEEEECCSSCCCSGGGBCGGG
T ss_pred CCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc------------ccCCCCEEECCCCCCCCCCchhhcC
Confidence 999999999999987443 26788888999987665431 3568999999999999764 47889
Q ss_pred CCCCcEEEccCCCCCCC--CCcC-CCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCc-ccCCCCCCCCEEEc
Q 001271 190 LPAVETLDLSRNKFAKV--DNLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL-RGIENLKSLEGLDI 265 (1111)
Q Consensus 190 L~nL~~LdLS~N~Ls~L--~~L~-~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L-~~L~~L~sL~~LdL 265 (1111)
+++|+.|+|++|.|+.+ ..+. .+++|+.|+|++|.|+++++.. .+++|+.|+|++|.|+.+ +.+..+++|+.|+|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEEC
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc-cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEe
Confidence 99999999999999984 2554 7899999999999999987655 379999999999999998 57889999999999
Q ss_pred cCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001271 266 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (1111)
Q Consensus 266 S~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~ 298 (1111)
++|.|+.+| ..+..+++|+.|+|++|++.|.
T Consensus 222 s~N~l~~lp--~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 222 RNNKLVLIE--KALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TTSCCCEEC--TTCCCCTTCCEEECTTCCBCHH
T ss_pred cCCcCcccc--hhhccCCCCCEEEcCCCCCcCc
Confidence 999999988 4688999999999999999854
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=6.8e-20 Score=198.10 Aligned_cols=134 Identities=25% Similarity=0.324 Sum_probs=107.1
Q ss_pred CCCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccc-ccccccceEe
Q 001271 166 QWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKL 241 (1111)
Q Consensus 166 ~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L 241 (1111)
.+++|++|+|++|.|+.+|. .+..+++|++|+|++|.++.++ .+..+++|++|+|++|.|+.++.. +..+++|+.|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 35578888888888887765 5678888888888888888865 477888888888888888887764 3457888888
Q ss_pred eccCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001271 242 VLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (1111)
Q Consensus 242 ~LS~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~ 300 (1111)
+|++|.|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.+.
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCSSS
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH-HHhccccCCCEEEecCCCeeCCCc
Confidence 88888888874 47788888888888888888775 567788888888888888887764
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=2.7e-20 Score=200.97 Aligned_cols=204 Identities=23% Similarity=0.309 Sum_probs=159.4
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCC
Q 001271 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (1111)
Q Consensus 87 ~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~ 166 (1111)
++|+.|+|++|.+++..+..|..+++|++|+|++|.++...+..+..+++|..+.+.+|.+..+... .+..
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG---------AFSG 98 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT---------TTTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh---------hhcC
Confidence 4688888888888766666788888888888888888776666777777777777777766554321 1345
Q ss_pred CCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCC--CC-CcCCCCCCcEEECCCCCCCCccc-cccccccce--
Q 001271 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK--VD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIV-- 239 (1111)
Q Consensus 167 L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~--L~-~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~-- 239 (1111)
+++|++|++++|.++.++. .+..+++|++|+|++|.++. ++ .+..+++|++|+|++|.|+.++. ....+++|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 6789999999999997766 68889999999999999987 33 68888999999999999988764 233345555
Q ss_pred --EeeccCCccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001271 240 --KLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (1111)
Q Consensus 240 --~L~LS~N~Lt~L~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~ 300 (1111)
.|++++|.++.++ ......+|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.+.
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ceeeecCCCcccccCccccCCCcccEEECCCCceeecCH-hHhcccccccEEEccCCcccccCC
Confidence 8899999998873 44455589999999999998875 567889999999999999988763
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=6.8e-20 Score=216.97 Aligned_cols=115 Identities=19% Similarity=0.152 Sum_probs=89.8
Q ss_pred cCCCCCCcEEECCCCCCC-C-ccccccccccceEeeccCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCC
Q 001271 209 LRKCVNLKHLDLGFNNLR-S-IAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPY 284 (1111)
Q Consensus 209 L~~L~sL~~LdLS~N~Lt-~-L~~l~~~L~sL~~L~LS~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~ 284 (1111)
+..++.|+.|+|++|.+. . ++..+..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|+|+.+++ ..+..+++
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~ 543 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNS 543 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC-GGGTTCTT
T ss_pred cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh-hHHhCCCC
Confidence 444566777777777543 2 2334455789999999999999983 68999999999999999999886 67899999
Q ss_pred CcEEEecCCCCCCCccchhhHhhhc-CCCCeeecCCCcCChhHH
Q 001271 285 LLNLWLEGNPLCCSRWYRAQVFSYF-AHPAKLKVDGKEISTREL 327 (1111)
Q Consensus 285 L~~L~LsgNpLs~~~~~r~~if~~l-~~L~~L~LdgN~It~~E~ 327 (1111)
|+.|+|++|.|+... +..+..+ ..|+.++|++|++.+...
T Consensus 544 L~~L~Ls~N~l~~~~---~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 544 LQVLDYSLNHIMTSK---KQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCEEECTTSCCCBCC---SSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCEEECCCCcCCCCC---HHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999997553 2334444 579999999999987643
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=7.3e-20 Score=228.53 Aligned_cols=288 Identities=16% Similarity=0.182 Sum_probs=204.1
Q ss_pred cccCCcEEEecCC-Cccch-HHhhhhcccchhhccC-CCccc---------cccccccCCCCCcchhHHHH--hcCCCCC
Q 001271 24 LIEGSIVLKLNPA-GLHYV-QSRLEALRELERLLAG-APLDY---------LRAYVSDLGDHRALEQLRRI--LKLLTSL 89 (1111)
Q Consensus 24 lL~~lk~L~Ls~~-~L~~L-p~~L~~L~~Le~L~~~-~~l~~---------Lrl~vLdLs~n~~L~~Lp~~--L~~L~nL 89 (1111)
-+..++.|+|+.+ .+..+ |..+..+.+|+.+... +.+.. -.+..++|++|...+.+|.. +.++++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 3566777777777 33344 4555666555554332 11111 12346778888776655554 8899999
Q ss_pred cEEEccCCCCCCCCC-ccCCCCCCCCEEEeeCCCCCccchhhHhhh--hhhhhhhhccCCCccch---------------
Q 001271 90 KVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLSTSAAKGLLEL--RHTLEKIICHNSTNALR--------------- 151 (1111)
Q Consensus 90 k~LdLs~N~Is~~iP-~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L--~~LleLlLs~N~L~sL~--------------- 151 (1111)
++|+|++|.+.+..+ ..|+++++|++|+|++|.+++..+..+..+ .+|..+.+..|.+....
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 999999999987655 578999999999999999998888888777 56666666666543211
Q ss_pred --hh--------------hcccc-----c---------------------cccCCCC--CCCccEEEccCCccccc-hhh
Q 001271 152 --HV--------------FASRI-----V---------------------EIKDSPQ--WNRLSFVSCSCNRLVIM-DES 186 (1111)
Q Consensus 152 --~l--------------~~~~I-----~---------------------~L~~l~~--L~~L~~L~Ls~N~LssL-P~~ 186 (1111)
.+ +...+ . ....+.. .++|+.|+|++|.+..+ |..
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~ 285 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence 00 00000 0 0000111 26799999999999866 457
Q ss_pred hcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccCCccCCcc--cCCCCCCCC
Q 001271 187 LQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLE 261 (1111)
Q Consensus 187 L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~N~Lt~L~--~L~~L~sL~ 261 (1111)
+..+++|+.|+|++|.|..+. .+..+++|++|+|++|.|+.+.+ ....+++|+.|+|++|.|+.++ .+..+++|+
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 889999999999999998863 68899999999999999988754 4556889999999999998884 588899999
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCCh
Q 001271 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 262 ~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~ 324 (1111)
.|+|++|.|+.++. +++|+.|++++|++...+.. ...++.+++.+|.+..
T Consensus 366 ~L~Ls~N~l~~i~~------~~~L~~L~l~~N~l~~l~~~-------~~~l~~L~ls~N~l~~ 415 (844)
T 3j0a_A 366 TLDLRDNALTTIHF------IPSIPDIFLSGNKLVTLPKI-------NLTANLIHLSENRLEN 415 (844)
T ss_dssp EEEEETCCSCCCSS------CCSCSEEEEESCCCCCCCCC-------CTTCCEEECCSCCCCS
T ss_pred EEECCCCCCCcccC------CCCcchhccCCCCccccccc-------ccccceeecccCcccc
Confidence 99999999988662 67788888888887644321 2335555566665554
No 62
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=1.6e-19 Score=211.14 Aligned_cols=252 Identities=17% Similarity=0.155 Sum_probs=191.3
Q ss_pred ccCCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCC
Q 001271 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP 104 (1111)
+..++.|+++.+.+..+| .+..+.+|+. +++++|...+ +| +..+++|++|+|++|.+++. |
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~--------------L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTK--------------LICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSE--------------EECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCE--------------EEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e
Confidence 677899999999999886 4665555443 4555554333 43 78899999999999999864 3
Q ss_pred ccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCC-ccccc
Q 001271 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN-RLVIM 183 (1111)
Q Consensus 105 ~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N-~LssL 183 (1111)
++.+++|++|+|++|.+++. | +..+++|..+.+.+|.+..++ +..+++|++|++++| .+..+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~------------l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEID------------VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCC------------CTTCTTCCEEECTTCSCCCCC
T ss_pred --cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceec------------cccCCcCCEEECCCCCccccc
Confidence 88899999999999999873 3 778888888999998766542 345678999999998 55555
Q ss_pred hhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcccCCCCCCCCEE
Q 001271 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGL 263 (1111)
Q Consensus 184 P~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~L 263 (1111)
.+..+++|+.|+|++|.|+.++ +..+++|+.|++++|.|+.++ ...+++|+.|+|++|+|+.++ +..+++|+.|
T Consensus 165 --~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L 238 (457)
T 3bz5_A 165 --DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYF 238 (457)
T ss_dssp --CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEE
T ss_pred --ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC-ccccCCCCEE
Confidence 4778889999999999999887 788889999999999998873 445688999999999999887 8888999999
Q ss_pred EccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc-----chhhHhhhcCCCCeeecCCCcC
Q 001271 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW-----YRAQVFSYFAHPAKLKVDGKEI 322 (1111)
Q Consensus 264 dLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~-----~r~~if~~l~~L~~L~LdgN~I 322 (1111)
+|++|.|+.++ +..+++|+.|++++|.+....- .....+..++.|+.++|.+|+.
T Consensus 239 ~l~~N~l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 239 DCSVNPLTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp ECCSSCCSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTT
T ss_pred EeeCCcCCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcc
Confidence 99999998876 3456666666666665543210 0001134557788888888864
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=7.8e-20 Score=217.21 Aligned_cols=115 Identities=13% Similarity=0.079 Sum_probs=54.1
Q ss_pred CcEEEecCCCccchHHhhhhcccchhhccC-CCcc---------ccccccccCCCCCcchhHHHHhcCCCCCcEEEccCC
Q 001271 28 SIVLKLNPAGLHYVQSRLEALRELERLLAG-APLD---------YLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPP 97 (1111)
Q Consensus 28 lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~-~~l~---------~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N 97 (1111)
.+.++++.++++.+|..+. .+|+.+... +.+. .-.+..+++++|+..+..|..|.++++|++|+|++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 3678888888888876552 222221110 0000 001123444444433333444555555555555555
Q ss_pred CCCCCCCccCCCCCCCCEEEeeCCCCCcc-chhhHhhhhhhhhhhhccCCC
Q 001271 98 PARDPTPLSLLPFCRLKVLELRGCDLSTS-AAKGLLELRHTLEKIICHNST 147 (1111)
Q Consensus 98 ~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~-~P~~L~~L~~LleLlLs~N~L 147 (1111)
+|+ .+|.. .+++|++|+|++|.+++. .|..+..+++|..+.+.+|.+
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 554 33333 455555555555555442 234555555555555555543
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=1.8e-19 Score=218.86 Aligned_cols=258 Identities=20% Similarity=0.188 Sum_probs=168.8
Q ss_pred ccCCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCC
Q 001271 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP 104 (1111)
..+++.|+++.++|..+|..+. .+|+. +++++|+ +..+|. .+++|++|+|++|.|+. +|
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~--~~L~~--------------L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~l~~-lp 97 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP--AHITT--------------LVIPDNN-LTSLPA---LPPELRTLEVSGNQLTS-LP 97 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC--TTCSE--------------EEECSCC-CSCCCC---CCTTCCEEEECSCCCSC-CC
T ss_pred CCCCcEEEecCCCcCccChhhC--CCCcE--------------EEecCCC-CCCCCC---cCCCCCEEEcCCCcCCc-CC
Confidence 3458899999999999887553 22322 2233332 222332 34555555555555542 33
Q ss_pred ccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhc---------cccccccCCCCCCCccEEEc
Q 001271 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA---------SRIVEIKDSPQWNRLSFVSC 175 (1111)
Q Consensus 105 ~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~---------~~I~~L~~l~~L~~L~~L~L 175 (1111)
. .+++|++|+|++|.|++. |. .+.+|..+.+.+|++..++..+. +.+..++ ..+.+|+.|++
T Consensus 98 ~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~--~~~~~L~~L~L 168 (622)
T 3g06_A 98 V---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP--ALPSELCKLWA 168 (622)
T ss_dssp C---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEEC
T ss_pred C---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcC--CccCCCCEEEC
Confidence 2 345555555555555442 22 23334444444444443332110 0001111 12346777777
Q ss_pred cCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcccCC
Q 001271 176 SCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 255 (1111)
Q Consensus 176 s~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~ 255 (1111)
++|.|+.+| ..+++|+.|+|++|.|+.++.. +++|+.|++++|.|+.++.. +++|+.|+|++|.|+.++ .
T Consensus 169 ~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp--~ 238 (622)
T 3g06_A 169 YNNQLTSLP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP--V 238 (622)
T ss_dssp CSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--C
T ss_pred CCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--C
Confidence 777777776 4467888888888888887643 47888888888888887753 478999999999999987 5
Q ss_pred CCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChhHHHHHH
Q 001271 256 NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQ 331 (1111)
Q Consensus 256 ~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E~~~~~ 331 (1111)
.+++|+.|+|++|.|+.+|. .+++|+.|+|++|.|+..+ ..+..++.|+.++|.+|+++......-.
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp----~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLP----ESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCC----GGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCC----HHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 67899999999999999884 6789999999999998443 3467889999999999999876654333
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=7.7e-22 Score=217.97 Aligned_cols=154 Identities=19% Similarity=0.082 Sum_probs=127.8
Q ss_pred CCCCccEEEccCCccccchhhhcCC-----CCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCc---cccc--c
Q 001271 166 QWNRLSFVSCSCNRLVIMDESLQLL-----PAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSI---AAFS--E 233 (1111)
Q Consensus 166 ~L~~L~~L~Ls~N~LssLP~~L~~L-----~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L---~~l~--~ 233 (1111)
.+++|++|+|++|+|+.+|..+..+ ++|++|+|++|+|..++ .+..+++|++|+|++|++.+. +... .
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 4568999999999999888777766 99999999999999975 789999999999999998753 2222 5
Q ss_pred ccccceEeeccCCccCCcc-----cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhh
Q 001271 234 VSCHIVKLVLRNNALTTLR-----GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSY 308 (1111)
Q Consensus 234 ~L~sL~~L~LS~N~Lt~L~-----~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~ 308 (1111)
.+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|++.++...+..+++|+.|+|++|.++..+. .++
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~---~~~-- 273 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLP-- 273 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS---SCC--
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh---hcc--
Confidence 6799999999999999653 235789999999999999997644566778999999999999985432 121
Q ss_pred cCCCCeeecCCCcCChh
Q 001271 309 FAHPAKLKVDGKEISTR 325 (1111)
Q Consensus 309 l~~L~~L~LdgN~It~~ 325 (1111)
+.|+.++|++|.++..
T Consensus 274 -~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp -SEEEEEECCSSCCCSC
T ss_pred -CCceEEECCCCCCCCC
Confidence 6789999999999865
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=4.3e-20 Score=215.77 Aligned_cols=259 Identities=17% Similarity=0.113 Sum_probs=146.3
Q ss_pred ccCCcEEEecCCCccchHHhhhhcccchhhccCC-------C--cccc--------------ccccccCCCCCcchhHHH
Q 001271 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-------P--LDYL--------------RAYVSDLGDHRALEQLRR 81 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~-------~--l~~L--------------rl~vLdLs~n~~L~~Lp~ 81 (1111)
...++.|.++.+.+..+|..+..+.+|+.+.... + +..+ .+..+++++|. +..+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCC
Confidence 3567889999999999999998888887753311 0 0000 01234444443 222332
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccc
Q 001271 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (1111)
Q Consensus 82 ~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L 161 (1111)
. .++|+.|+|++|.+++ +|.. +++|++|+|++|.+++. |.. .+++.++.+.+|.+..++
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~lp---------- 147 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEKLP---------- 147 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSSCC----------
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCCCc----------
Confidence 1 3456666666666654 4432 25666666666666542 111 134555556666544332
Q ss_pred cCCCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEe
Q 001271 162 KDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKL 241 (1111)
Q Consensus 162 ~~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L 241 (1111)
.+..+++|++|++++|+++.+|..+ ++|++|+|++|.++.++.+..+++|+.|++++|.+++++... ++|+.|
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L 220 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESI 220 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEE
T ss_pred -ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEE
Confidence 2445677888888888887776543 477888888888887777778888888888888887766533 578888
Q ss_pred eccCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCc
Q 001271 242 VLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (1111)
Q Consensus 242 ~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~ 321 (1111)
++++|.++.++.+..+++|+.|++++|+++.++. .+++|+.|++++|.+...+. .++.++.+++++|.
T Consensus 221 ~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l~~-------~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 221 VAGNNILEELPELQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLPE-------LPQSLTFLDVSENI 288 (454)
T ss_dssp ECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSC
T ss_pred ECcCCcCCcccccCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCcccccCc-------ccCcCCEEECcCCc
Confidence 8888888877777788888888888888887763 23678888888888765432 12567778888887
Q ss_pred CCh
Q 001271 322 IST 324 (1111)
Q Consensus 322 It~ 324 (1111)
++.
T Consensus 289 l~~ 291 (454)
T 1jl5_A 289 FSG 291 (454)
T ss_dssp CSE
T ss_pred cCc
Confidence 754
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=3.8e-19 Score=207.97 Aligned_cols=263 Identities=19% Similarity=0.181 Sum_probs=138.3
Q ss_pred cccCCcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCC
Q 001271 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPT 103 (1111)
Q Consensus 24 lL~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~i 103 (1111)
-+..++.|+|+.+.+..+| +..+.+|+. +++++|...+ ++ +..+++|++|+|++|.+++ +
T Consensus 62 ~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~--------------L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l 121 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTLD--LSQNTNLTY--------------LACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-L 121 (457)
T ss_dssp GCTTCSEEECCSSCCSCCC--CTTCTTCSE--------------EECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-C
T ss_pred ccCCCCEEEccCCcCCeEc--cccCCCCCE--------------EECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-e
Confidence 3577899999999999875 555555444 3444444222 22 5667777777777777765 3
Q ss_pred CccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCC-Cccch--------hh--hccccccccCCCCCCCccE
Q 001271 104 PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALR--------HV--FASRIVEIKDSPQWNRLSF 172 (1111)
Q Consensus 104 P~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~-L~sL~--------~l--~~~~I~~L~~l~~L~~L~~ 172 (1111)
| +..+++|++|+|++|.+++. + +..++.|..+.+.+|. +..+. .+ ..+.+..++ +..+++|+.
T Consensus 122 ~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~ 195 (457)
T 3bz5_A 122 D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNR 195 (457)
T ss_dssp C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-CTTCTTCCE
T ss_pred c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-cccCCCCCE
Confidence 3 66677777777777777663 2 5556666666666662 11110 00 000011111 223344555
Q ss_pred EEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcc
Q 001271 173 VSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR 252 (1111)
Q Consensus 173 L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~ 252 (1111)
|++++|.|+.++ +..+++|+.|+|++|+|++++ +..+++|+.|++++|.|++++. ..+++|+.|++++|.++.+.
T Consensus 196 L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~--~~l~~L~~L~l~~n~L~~L~ 270 (457)
T 3bz5_A 196 LNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDV--STLSKLTTLHCIQTDLLEID 270 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCC--TTCTTCCEEECTTCCCSCCC
T ss_pred EECcCCcCCeec--cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCH--HHCCCCCEEeccCCCCCEEE
Confidence 555555554442 444555555555555555544 4445555555555555554431 12233333333333333220
Q ss_pred ----------cCCCCCCCCEEEccCCCCCC--------CchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCe
Q 001271 253 ----------GIENLKSLEGLDISYNIIST--------FSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAK 314 (1111)
Q Consensus 253 ----------~L~~L~sL~~LdLS~N~Is~--------l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~ 314 (1111)
.+..+++|+.|+|++|.+.. +..+ .+..+++|+.|+|++|.++..+ +..++.|+.
T Consensus 271 l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L-~l~~~~~L~~L~L~~N~l~~l~------l~~l~~L~~ 343 (457)
T 3bz5_A 271 LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNTELTELD------VSHNTKLKS 343 (457)
T ss_dssp CTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCC-CCTTCTTCCEEECTTCCCSCCC------CTTCTTCSE
T ss_pred CCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEe-chhhcccCCEEECCCCcccccc------cccCCcCcE
Confidence 12344556666666654321 1111 1445567777777777776531 445667777
Q ss_pred eecCCCcCCh
Q 001271 315 LKVDGKEIST 324 (1111)
Q Consensus 315 L~LdgN~It~ 324 (1111)
+++.+|.++.
T Consensus 344 L~l~~N~l~~ 353 (457)
T 3bz5_A 344 LSCVNAHIQD 353 (457)
T ss_dssp EECCSSCCCB
T ss_pred EECCCCCCCC
Confidence 7777777754
No 68
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=4.2e-21 Score=217.44 Aligned_cols=226 Identities=17% Similarity=0.175 Sum_probs=126.0
Q ss_pred ccCCCCCcchh----HHHHhcCCCCCcEEEccCCCC---CCCCCccC-------CCCCCCCEEEeeCCCCCcc----chh
Q 001271 68 SDLGDHRALEQ----LRRILKLLTSLKVVSALPPPA---RDPTPLSL-------LPFCRLKVLELRGCDLSTS----AAK 129 (1111)
Q Consensus 68 LdLs~n~~L~~----Lp~~L~~L~nLk~LdLs~N~I---s~~iP~sL-------s~L~nL~~LdLS~N~Ls~~----~P~ 129 (1111)
++|++|+.... ++..+..+++|++|+|++|.+ .+.+|..+ ..+++|++|+|++|.++.. +|.
T Consensus 37 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 116 (386)
T 2ca6_A 37 IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116 (386)
T ss_dssp EECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHH
Confidence 34455543333 333455666666666666433 23334333 4566666666666666642 233
Q ss_pred hHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccc-----cchhhhcCC---------CCCcE
Q 001271 130 GLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-----IMDESLQLL---------PAVET 195 (1111)
Q Consensus 130 ~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Ls-----sLP~~L~~L---------~nL~~ 195 (1111)
.+..+ ++|++|+|++|.|+ .++..+..+ ++|++
T Consensus 117 ~l~~~---------------------------------~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 117 FLSKH---------------------------------TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp HHHHC---------------------------------TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred HHHhC---------------------------------CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcE
Confidence 33333 46666666666665 222233333 66777
Q ss_pred EEccCCCCCC--CC----CcCCCCCCcEEECCCCCCCC-----ccc-cccccccceEeeccCCccC-----Cc-ccCCCC
Q 001271 196 LDLSRNKFAK--VD----NLRKCVNLKHLDLGFNNLRS-----IAA-FSEVSCHIVKLVLRNNALT-----TL-RGIENL 257 (1111)
Q Consensus 196 LdLS~N~Ls~--L~----~L~~L~sL~~LdLS~N~Lt~-----L~~-l~~~L~sL~~L~LS~N~Lt-----~L-~~L~~L 257 (1111)
|+|++|.|+. ++ .+..+++|++|+|++|.|+. +.+ ....+++|+.|+|++|.|+ .+ ..+..+
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 7777777652 22 34456677777777776662 111 3334566777777777764 22 245666
Q ss_pred CCCCEEEccCCCCCCCchh---hhh--cCCCCCcEEEecCCCCCCC--ccchhhHhhhcCCCCeeecCCCcCChhH
Q 001271 258 KSLEGLDISYNIISTFSEL---EFL--ASLPYLLNLWLEGNPLCCS--RWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (1111)
Q Consensus 258 ~sL~~LdLS~N~Is~l~~l---~~L--~~L~~L~~L~LsgNpLs~~--~~~r~~if~~l~~L~~L~LdgN~It~~E 326 (1111)
++|+.|+|++|.|+..... ..+ ..+++|+.|+|++|+++.. ..+...++..++.|+.++|.+|+++...
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 7777777777777654211 233 2367777777777777531 0122222244677777777777777655
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=4.1e-19 Score=207.52 Aligned_cols=220 Identities=20% Similarity=0.163 Sum_probs=125.9
Q ss_pred ccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccC
Q 001271 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (1111)
Q Consensus 66 ~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N 145 (1111)
..+++++|...+ +| .+.++++|++|++++|++++ +|..+ .+|++|+|++|.+++ +| .+..+++|..+.+.+|
T Consensus 134 ~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 134 EYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred CEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCC
Confidence 345555554332 55 36666666666666666663 44332 466666666666665 34 4666666666666666
Q ss_pred CCccchhhhccccccccCCCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCC
Q 001271 146 STNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNL 225 (1111)
Q Consensus 146 ~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~L 225 (1111)
.+..++.. .++|++|++++|.++.+|. +..+++|+.|++++|+++.++.. +++|+.|++++|.+
T Consensus 206 ~l~~l~~~-------------~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 206 SLKKLPDL-------------PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYL 269 (454)
T ss_dssp CCSSCCCC-------------CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCC
T ss_pred cCCcCCCC-------------cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcc
Confidence 65544321 1356666666666666653 66666666666666666665432 35566666666666
Q ss_pred CCccccccccccceEeeccCCccCCcccCC-----------------CC-CCCCEEEccCCCCCCCchhhhhcCCCCCcE
Q 001271 226 RSIAAFSEVSCHIVKLVLRNNALTTLRGIE-----------------NL-KSLEGLDISYNIISTFSELEFLASLPYLLN 287 (1111)
Q Consensus 226 t~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~-----------------~L-~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~ 287 (1111)
++++.. +++|+.|++++|.+++++.+. .+ ++|+.|+|++|+++.++. .+++|+.
T Consensus 270 ~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~-----~~~~L~~ 341 (454)
T 1jl5_A 270 TDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA-----LPPRLER 341 (454)
T ss_dssp SCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC-----CCTTCCE
T ss_pred cccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccc-----cCCcCCE
Confidence 554432 244555555555544432111 11 366666666666666552 2466777
Q ss_pred EEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCCh
Q 001271 288 LWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 288 L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~ 324 (1111)
|++++|.++..+. .++.++.++|.+|.+..
T Consensus 342 L~L~~N~l~~lp~-------~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 342 LIASFNHLAEVPE-------LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp EECCSSCCSCCCC-------CCTTCCEEECCSSCCSS
T ss_pred EECCCCccccccc-------hhhhccEEECCCCCCCc
Confidence 7777777664332 24566777777776653
No 70
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=3.9e-19 Score=210.48 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=65.2
Q ss_pred cccceEeeccCCccCC-c--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCC
Q 001271 235 SCHIVKLVLRNNALTT-L--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH 311 (1111)
Q Consensus 235 L~sL~~L~LS~N~Lt~-L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~ 311 (1111)
++.|+.|+|++|.+.. + ..+..+++|+.|+|++|+|+.+++ ..|..+++|+.|+|++|.|+..+ ...|..++.
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~-~~f~~l~~L~~L~Ls~N~l~~l~---~~~~~~l~~ 543 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLD---TFPYKCLNS 543 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCBCC---CGGGTTCTT
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh-HHHcCCCCCCEEECCCCcCCCCC---hhHHhCCCC
Confidence 3456667777765432 2 357788899999999999988765 67888899999999999887543 345677888
Q ss_pred CCeeecCCCcCCh
Q 001271 312 PAKLKVDGKEIST 324 (1111)
Q Consensus 312 L~~L~LdgN~It~ 324 (1111)
|+.++|++|.++.
T Consensus 544 L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 544 LQVLDYSLNHIMT 556 (635)
T ss_dssp CCEEECTTSCCCB
T ss_pred CCEEECCCCcCCC
Confidence 9999999998864
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=1.3e-18 Score=211.46 Aligned_cols=223 Identities=21% Similarity=0.194 Sum_probs=152.0
Q ss_pred cccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCC
Q 001271 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (1111)
Q Consensus 67 vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~ 146 (1111)
.++++++. +..+|..+. ++|+.|+|++|.|+ .+|. .+++|++|+|++|.|+. +|. .+++|..+.+.+|+
T Consensus 44 ~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 44 VLNVGESG-LTTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp EEECCSSC-CSCCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCC
T ss_pred EEEecCCC-cCccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCc
Confidence 46666665 446776543 89999999999998 4555 57899999999999986 454 66788889999998
Q ss_pred Cccchhhhc---------cccccccCCCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcE
Q 001271 147 TNALRHVFA---------SRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKH 217 (1111)
Q Consensus 147 L~sL~~l~~---------~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~ 217 (1111)
+..++..+. +.+..++. .+++|++|+|++|.|+.+|. .+++|+.|+|++|.|+.++ ..+++|+.
T Consensus 113 l~~l~~~l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~--~~~~~L~~ 185 (622)
T 3g06_A 113 LTHLPALPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP--MLPSGLQE 185 (622)
T ss_dssp CCCCCCCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC--CCCTTCCE
T ss_pred CCCCCCCCCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc--ccCCCCcE
Confidence 877655211 01111111 12455555555555555443 2344555555555555554 33467777
Q ss_pred EECCCCCCCCccccccccccceEeeccCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCC
Q 001271 218 LDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCC 297 (1111)
Q Consensus 218 LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~ 297 (1111)
|+|++|.|+.++.. +++|+.|++++|.|+.++.. +++|+.|+|++|.|+.++ ..+++|+.|+|++|.|+.
T Consensus 186 L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp-----~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 186 LSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP-----VLPSELKELMVSGNRLTS 255 (622)
T ss_dssp EECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSC
T ss_pred EECCCCCCCCCCCc---cchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC-----CCCCcCcEEECCCCCCCc
Confidence 77777777766543 36777777777777777542 478888888888888876 356788899999998875
Q ss_pred CccchhhHhhhcCCCCeeecCCCcCCh
Q 001271 298 SRWYRAQVFSYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 298 ~~~~r~~if~~l~~L~~L~LdgN~It~ 324 (1111)
.+. .++.|+.++|.+|.++.
T Consensus 256 lp~-------~~~~L~~L~Ls~N~L~~ 275 (622)
T 3g06_A 256 LPM-------LPSGLLSLSVYRNQLTR 275 (622)
T ss_dssp CCC-------CCTTCCEEECCSSCCCS
T ss_pred CCc-------ccccCcEEeCCCCCCCc
Confidence 543 35678889999988863
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=2.6e-19 Score=193.29 Aligned_cols=219 Identities=17% Similarity=0.134 Sum_probs=177.9
Q ss_pred EEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCC
Q 001271 30 VLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLP 109 (1111)
Q Consensus 30 ~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~ 109 (1111)
.++-...++..+|..+.. .+..+++++|+.....+..+.++++|++|+|++|.+.+..+..|..
T Consensus 11 ~~~c~~~~l~~ip~~l~~----------------~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLPF----------------STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74 (276)
T ss_dssp EEECTTSCCSSCCSSSCT----------------TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred eEEecCCCccccCCCCCC----------------CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC
Confidence 445556666666654321 1223667777655444457889999999999999999877778999
Q ss_pred CCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcccc--chhhh
Q 001271 110 FCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI--MDESL 187 (1111)
Q Consensus 110 L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Lss--LP~~L 187 (1111)
+++|++|+|++|.+++..+..+..+++|..+.+.+|.+..+.... +..+++|++|++++|.++. +|..+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~l~~~~ 145 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP---------IGHLKTLKELNVAHNLIQSFKLPEYF 145 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCC---------CTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchh---------cccCCCCCEEECcCCccceecCchhh
Confidence 999999999999999888888999999999999999877654421 3467899999999999996 68899
Q ss_pred cCCCCCcEEEccCCCCCCCC--CcCCCCCCc----EEECCCCCCCCccccccccccceEeeccCCccCCcc--cCCCCCC
Q 001271 188 QLLPAVETLDLSRNKFAKVD--NLRKCVNLK----HLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKS 259 (1111)
Q Consensus 188 ~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~----~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~--~L~~L~s 259 (1111)
..+++|+.|+|++|+|+.++ .+..+++|+ .|++++|.|+.+++......+|+.|+|++|.|+.++ .+..+++
T Consensus 146 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS 225 (276)
T ss_dssp GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhccccc
Confidence 99999999999999999864 455555555 899999999998876655669999999999999985 4788999
Q ss_pred CCEEEccCCCCCCC
Q 001271 260 LEGLDISYNIISTF 273 (1111)
Q Consensus 260 L~~LdLS~N~Is~l 273 (1111)
|+.|+|++|.+...
T Consensus 226 L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 226 LQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEEECCSSCBCCC
T ss_pred ccEEEccCCccccc
Confidence 99999999999853
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=2.7e-19 Score=189.50 Aligned_cols=201 Identities=13% Similarity=0.158 Sum_probs=119.1
Q ss_pred chhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCC-CCccchhhHhhhhhhhhhhhcc-CCCccchhh
Q 001271 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-LSTSAAKGLLELRHTLEKIICH-NSTNALRHV 153 (1111)
Q Consensus 76 L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~-Ls~~~P~~L~~L~~LleLlLs~-N~L~sL~~l 153 (1111)
+..+|. + .++|+.|+|++|++++..+..|..+++|++|+|++|. ++...+..|..+++|..+.+.+ |.+..++..
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 555555 2 3489999999999997777789999999999999997 8776665666666555555555 554443321
Q ss_pred hccccccccCCCCCCCccEEEccCCccccchhhhcCCCCCc---EEEccCC-CCCCCC--CcCCCCCCc-EEECCCCCCC
Q 001271 154 FASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVE---TLDLSRN-KFAKVD--NLRKCVNLK-HLDLGFNNLR 226 (1111)
Q Consensus 154 ~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~---~LdLS~N-~Ls~L~--~L~~L~sL~-~LdLS~N~Lt 226 (1111)
. +..+++|++|++++|.++.+|. +..+++|+ .|+|++| .++.++ .+..+++|+ .|++++|.|+
T Consensus 100 ~---------f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 100 A---------LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp S---------EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred H---------hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 1 1123455555565555555554 55555555 5555555 555543 255555555 5555555555
Q ss_pred CccccccccccceEeeccCCc-cCCcc--cCCCC-CCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCC
Q 001271 227 SIAAFSEVSCHIVKLVLRNNA-LTTLR--GIENL-KSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (1111)
Q Consensus 227 ~L~~l~~~L~sL~~L~LS~N~-Lt~L~--~L~~L-~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgN 293 (1111)
.++......++|+.|+|++|+ ++.++ .+..+ ++|+.|+|++|.|+.++. ..+++|+.|+++++
T Consensus 170 ~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~----~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS----KGLEHLKELIARNT 236 (239)
T ss_dssp EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC----TTCTTCSEEECTTC
T ss_pred ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh----hHhccCceeeccCc
Confidence 554433223455555555553 55542 34555 555555555555555542 14455555555544
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=197.47 Aligned_cols=202 Identities=20% Similarity=0.162 Sum_probs=143.5
Q ss_pred CCCCCcEEEccCCCCCCCCCccC--CCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhcccccccc
Q 001271 85 LLTSLKVVSALPPPARDPTPLSL--LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (1111)
Q Consensus 85 ~L~nLk~LdLs~N~Is~~iP~sL--s~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~ 162 (1111)
.+++|++|+|++|.+.+..|..+ ..+++|++|+|++|.+++..+. +....
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-~~~~~--------------------------- 140 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-LAELQ--------------------------- 140 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS-HHHHH---------------------------
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh-hHHHH---------------------------
Confidence 45779999999999999999888 8999999999999999864331 11100
Q ss_pred CCCCCCCccEEEccCCccccch-hhhcCCCCCcEEEccCCCCCC---CC---CcCCCCCCcEEECCCCCCCCcccc----
Q 001271 163 DSPQWNRLSFVSCSCNRLVIMD-ESLQLLPAVETLDLSRNKFAK---VD---NLRKCVNLKHLDLGFNNLRSIAAF---- 231 (1111)
Q Consensus 163 ~l~~L~~L~~L~Ls~N~LssLP-~~L~~L~nL~~LdLS~N~Ls~---L~---~L~~L~sL~~LdLS~N~Lt~L~~l---- 231 (1111)
+..+++|++|+|++|.|+.++ ..+..+++|++|+|++|++.+ ++ .+..+++|++|+|++|.|+.++..
T Consensus 141 -~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 141 -QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp -TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred -hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 012457788888888887655 467778888888888887654 21 235677888888888888766552
Q ss_pred ccccccceEeeccCCccCCc-c-cCCCC---CCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHh
Q 001271 232 SEVSCHIVKLVLRNNALTTL-R-GIENL---KSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVF 306 (1111)
Q Consensus 232 ~~~L~sL~~L~LS~N~Lt~L-~-~L~~L---~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if 306 (1111)
...+++|++|+|++|.|+.+ | .+..+ ++|++|+|++|+|+.+|. .+ .++|+.|+|++|+++..+. +
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~--~~~L~~L~Ls~N~l~~~~~-----~ 290 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK--GL--PAKLRVLDLSSNRLNRAPQ-----P 290 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS--CC--CSCCSCEECCSCCCCSCCC-----T
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh--hh--cCCCCEEECCCCcCCCCch-----h
Confidence 33457788888888888776 2 34444 678888888888887763 22 2678888888888875422 3
Q ss_pred hhcCCCCeeecCCCcCCh
Q 001271 307 SYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 307 ~~l~~L~~L~LdgN~It~ 324 (1111)
..++.|+.++|++|+++.
T Consensus 291 ~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TSCCCCSCEECSSTTTSC
T ss_pred hhCCCccEEECcCCCCCC
Confidence 456777888888888764
No 75
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.2e-18 Score=191.51 Aligned_cols=198 Identities=20% Similarity=0.212 Sum_probs=161.7
Q ss_pred cCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccC
Q 001271 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (1111)
Q Consensus 84 ~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~ 163 (1111)
..+++|+.|++++|.+... + .+..+++|++|+|++|.+++..+ +.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~------------------------------- 87 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LA------------------------------- 87 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GT-------------------------------
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cc-------------------------------
Confidence 4578899999999999854 3 48889999999999999987433 22
Q ss_pred CCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeec
Q 001271 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (1111)
Q Consensus 164 l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~L 243 (1111)
.+++|++|+|++|.++.+|. +..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.++ ....+++|+.|+|
T Consensus 88 --~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L 163 (291)
T 1h6t_A 88 --NLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSL 163 (291)
T ss_dssp --TCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred --cCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEc
Confidence 24589999999999998764 8899999999999999999988999999999999999999884 4445799999999
Q ss_pred cCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCC
Q 001271 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (1111)
Q Consensus 244 S~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It 323 (1111)
++|.|+.++.+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|++...+.+....+... .....+++..++
T Consensus 164 ~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~---~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~~--~~l~~l~~~~i~ 238 (291)
T 1h6t_A 164 EDNQISDIVPLAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPINHQSNLVVP--NTVKNTDGSLVT 238 (291)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEEEEEEEEECCCEECCSEEEEE--CCCBCTTSCBCC
T ss_pred cCCccccchhhcCCCccCEEECCCCcCCCCh---hhccCCCCCEEECcCCcccCCccccccccEEc--ceEECCCCCCcC
Confidence 9999999977999999999999999999976 37889999999999999987654333222222 234556777775
Q ss_pred hh
Q 001271 324 TR 325 (1111)
Q Consensus 324 ~~ 325 (1111)
..
T Consensus 239 ~~ 240 (291)
T 1h6t_A 239 PE 240 (291)
T ss_dssp EE
T ss_pred CC
Confidence 44
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=4.7e-18 Score=181.72 Aligned_cols=175 Identities=22% Similarity=0.310 Sum_probs=145.6
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCC
Q 001271 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (1111)
Q Consensus 87 ~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~ 166 (1111)
...+.++++++.++ .+|..+. ++|+.|+|++|.+++..+..+..
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~--------------------------------- 57 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRG--------------------------------- 57 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTT---------------------------------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcC---------------------------------
Confidence 35678899998887 5666665 68999999999998755544433
Q ss_pred CCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccc-ccccccceEee
Q 001271 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLV 242 (1111)
Q Consensus 167 L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L~ 242 (1111)
+++|++|+|++|.|+.++. .|..+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.+++. +..+++|+.|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 3478899999998887655 5788999999999999998875 578889999999999999988764 34578999999
Q ss_pred ccCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001271 243 LRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (1111)
Q Consensus 243 LS~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~ 298 (1111)
|++|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|++.|.
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCceeCC
Confidence 9999999885 48899999999999999999885 6788999999999999999887
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=2.3e-18 Score=190.51 Aligned_cols=207 Identities=22% Similarity=0.261 Sum_probs=178.9
Q ss_pred EccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccE
Q 001271 93 SALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSF 172 (1111)
Q Consensus 93 dLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~ 172 (1111)
.+..+.+.+.+ .+..+++|++|++++|.++. ++ .+..+++|..+.+.+|.+..++. +..+++|++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-----------~~~l~~L~~ 89 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-----------LKNLTKITE 89 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCCSCCE
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-----------HccCCCCCE
Confidence 34455555432 34568899999999999986 34 68889999999999998776654 245779999
Q ss_pred EEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcc
Q 001271 173 VSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR 252 (1111)
Q Consensus 173 L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~ 252 (1111)
|+|++|.|+.++ .+..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.++.+++ ...+++|+.|+|++|.++.++
T Consensus 90 L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 90 LELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp EECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred EEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh
Confidence 999999999986 689999999999999999999889999999999999999999887 445799999999999999998
Q ss_pred cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCCh
Q 001271 253 GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 253 ~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~ 324 (1111)
.+..+++|+.|+|++|.|+.+++ +..+++|+.|+|++|++...+ .+..++.|+.++|++|+++.
T Consensus 168 ~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~-----~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 168 PLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS-----PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG-----GGTTCTTCCEEEEEEEEEEC
T ss_pred hhcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccc-----cccCCCCCCEEEccCCeeec
Confidence 89999999999999999999874 788999999999999998654 25778999999999999864
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=4.1e-19 Score=201.06 Aligned_cols=223 Identities=18% Similarity=0.126 Sum_probs=173.1
Q ss_pred chhHHHHhcCCCCCcEEEccCCCCCCCC----CccCCCCCCCCEEEeeCCCCC---ccchhhHhhhhhhhhhhhccCCCc
Q 001271 76 LEQLRRILKLLTSLKVVSALPPPARDPT----PLSLLPFCRLKVLELRGCDLS---TSAAKGLLELRHTLEKIICHNSTN 148 (1111)
Q Consensus 76 L~~Lp~~L~~L~nLk~LdLs~N~Is~~i----P~sLs~L~nL~~LdLS~N~Ls---~~~P~~L~~L~~LleLlLs~N~L~ 148 (1111)
+..++..+..+++|+.|+|++|.+.+.. +..|..+++|++|+|++|.+. +.+|.++..+...
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~----------- 89 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA----------- 89 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH-----------
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH-----------
Confidence 4556777888999999999999998753 345788999999999997554 4556666544311
Q ss_pred cchhhhccccccccCCCCCCCccEEEccCCcccc-----chhhhcCCCCCcEEEccCCCCCCC-----C-CcCCC-----
Q 001271 149 ALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI-----MDESLQLLPAVETLDLSRNKFAKV-----D-NLRKC----- 212 (1111)
Q Consensus 149 sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Lss-----LP~~L~~L~nL~~LdLS~N~Ls~L-----~-~L~~L----- 212 (1111)
+..+++|++|+|++|.|+. +|..+..+++|++|+|++|.|+.. . .+..+
T Consensus 90 ---------------l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~ 154 (386)
T 2ca6_A 90 ---------------LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154 (386)
T ss_dssp ---------------HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhh
Confidence 1235699999999999996 788899999999999999999742 1 24344
Q ss_pred ----CCCcEEECCCCCCC--Cccc---cccccccceEeeccCCccCC------cc-cCCCCCCCCEEEccCCCCC-----
Q 001271 213 ----VNLKHLDLGFNNLR--SIAA---FSEVSCHIVKLVLRNNALTT------LR-GIENLKSLEGLDISYNIIS----- 271 (1111)
Q Consensus 213 ----~sL~~LdLS~N~Lt--~L~~---l~~~L~sL~~L~LS~N~Lt~------L~-~L~~L~sL~~LdLS~N~Is----- 271 (1111)
++|++|+|++|+|+ .++. ....+++|+.|+|++|.|+. ++ .+..+++|+.|+|++|.|+
T Consensus 155 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~ 234 (386)
T 2ca6_A 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234 (386)
T ss_dssp HHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred cccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH
Confidence 89999999999997 3442 33357899999999999983 24 7889999999999999995
Q ss_pred CCchhhhhcCCCCCcEEEecCCCCCCCc-cchhhHhhh--cCCCCeeecCCCcCChhH
Q 001271 272 TFSELEFLASLPYLLNLWLEGNPLCCSR-WYRAQVFSY--FAHPAKLKVDGKEISTRE 326 (1111)
Q Consensus 272 ~l~~l~~L~~L~~L~~L~LsgNpLs~~~-~~r~~if~~--l~~L~~L~LdgN~It~~E 326 (1111)
.++ ..+..+++|+.|+|++|.+.... ......+.. ++.|+.++|.+|.++...
T Consensus 235 ~l~--~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 235 ALA--IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp HHH--HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HHH--HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 344 56788999999999999997431 111233433 788999999999998754
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=6e-18 Score=185.96 Aligned_cols=203 Identities=20% Similarity=0.167 Sum_probs=170.4
Q ss_pred cCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccccchh
Q 001271 106 SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE 185 (1111)
Q Consensus 106 sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~ 185 (1111)
.+..+++|+.|++++|.++. +|..+. +.+..+.+.+|.+..+.... +..+++|++|+|++|.|+.++.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~---------~~~l~~L~~L~L~~n~l~~~~~ 72 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLAT---------LMPYTRLTQLNLDRAELTKLQV 72 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGG---------GTTCTTCCEEECTTSCCCEEEC
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHH---------hhcCCCCCEEECCCCccCcccC
Confidence 36778999999999999986 554443 46778889999877664321 2357799999999999998876
Q ss_pred hhcCCCCCcEEEccCCCCCCCC-CcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccCCccCCcc--cCCCCCCCC
Q 001271 186 SLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLE 261 (1111)
Q Consensus 186 ~L~~L~nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~N~Lt~L~--~L~~L~sL~ 261 (1111)
. ..+++|+.|+|++|.|+.++ .+..+++|++|+|++|+|+.+++ .+..+++|+.|+|++|+|+.++ .+..+++|+
T Consensus 73 ~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp C-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred C-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 5 78999999999999999987 57889999999999999999885 4556899999999999999985 478899999
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChhH
Q 001271 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (1111)
Q Consensus 262 ~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E 326 (1111)
.|+|++|+|+.++. ..+..+++|+.|+|++|.++..+.. +.....++.+.|.+|++.+..
T Consensus 152 ~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip~~----~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 152 KLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPKG----FFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp EEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCCCSEEECCSCCBCCSG
T ss_pred EEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCccChh----hcccccCCeEEeCCCCccCcC
Confidence 99999999999986 6678899999999999999865422 234567999999999997654
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=9.1e-18 Score=181.85 Aligned_cols=179 Identities=22% Similarity=0.327 Sum_probs=151.9
Q ss_pred hcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhcccccccc
Q 001271 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (1111)
Q Consensus 83 L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~ 162 (1111)
+..+++|+.|++++|.+.. + ..+..+++|++|+|++|.+++. + .+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~-~l------------------------------- 81 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-S-AL------------------------------- 81 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-G-GG-------------------------------
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-h-hh-------------------------------
Confidence 3468899999999999874 3 3588899999999999998762 1 22
Q ss_pred CCCCCCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccc-ccccccc
Q 001271 163 DSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHI 238 (1111)
Q Consensus 163 ~l~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL 238 (1111)
..+++|++|+|++|.|+.++. .+..+++|++|+|++|.++.++ .+..+++|++|+|++|.|+.+++. ...+++|
T Consensus 82 --~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 82 --KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp --TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred --cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 134589999999999998776 5789999999999999999875 378999999999999999988764 3467999
Q ss_pred eEeeccCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001271 239 VKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (1111)
Q Consensus 239 ~~L~LS~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~ 299 (1111)
+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|++.|.+
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCT
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCCccccC
Confidence 99999999999985 37899999999999999999886 66889999999999999998764
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=6.6e-18 Score=182.49 Aligned_cols=178 Identities=20% Similarity=0.174 Sum_probs=132.0
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCC
Q 001271 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (1111)
Q Consensus 87 ~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~ 166 (1111)
++|+.|+|++|.+....+..|..+++|++|+|++|.|+...+..+..+++|..+.+.+|.+..++.. .+..
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~---------~~~~ 107 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG---------VFDQ 107 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT---------TTTT
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh---------Hccc
Confidence 3455566666655544444555556666666666655554444445555555555555554443321 1234
Q ss_pred CCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccc-ccccccceEee
Q 001271 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLV 242 (1111)
Q Consensus 167 L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L~ 242 (1111)
+++|++|+|++|.++.+|. .|..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|+.+++. +..+++|+.|+
T Consensus 108 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187 (270)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence 6689999999999998775 5789999999999999999986 488999999999999999998864 44579999999
Q ss_pred ccCCccCCcc--cCCCCCCCCEEEccCCCCCCC
Q 001271 243 LRNNALTTLR--GIENLKSLEGLDISYNIISTF 273 (1111)
Q Consensus 243 LS~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l 273 (1111)
|++|.|+.++ .+..+++|+.|+|++|.+...
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 9999999985 488899999999999998653
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=5.5e-19 Score=202.99 Aligned_cols=165 Identities=19% Similarity=0.151 Sum_probs=90.9
Q ss_pred ccCCcEEEecCCCccch-HHhh-hhcccchhhccCCCccccccccccCCCCCcc----hhHHHHhcCCCCCcEEEccCCC
Q 001271 25 IEGSIVLKLNPAGLHYV-QSRL-EALRELERLLAGAPLDYLRAYVSDLGDHRAL----EQLRRILKLLTSLKVVSALPPP 98 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~~L-p~~L-~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L----~~Lp~~L~~L~nLk~LdLs~N~ 98 (1111)
+..++.|+|+.+.+... +..+ ..+.. .. -.+..+++++|+.. ..++..+..+++|++|+|++|.
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~------~~----~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQT------PS----CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCS------TT----CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhh------CC----CceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 36689999999988753 2222 22321 00 01223566666654 3567778888888888888888
Q ss_pred CCCCCCccC-----CCCCCCCEEEeeCCCCCccc----hhhHhhhhhhhhhhhccCCCccchhh-hccccccccCCCCCC
Q 001271 99 ARDPTPLSL-----LPFCRLKVLELRGCDLSTSA----AKGLLELRHTLEKIICHNSTNALRHV-FASRIVEIKDSPQWN 168 (1111)
Q Consensus 99 Is~~iP~sL-----s~L~nL~~LdLS~N~Ls~~~----P~~L~~L~~LleLlLs~N~L~sL~~l-~~~~I~~L~~l~~L~ 168 (1111)
+.+..+..+ ..+++|++|+|++|.++... +..+..+++|.++.+.+|.+...... +...+. ...+
T Consensus 125 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-----~~~~ 199 (461)
T 1z7x_W 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK-----DSPC 199 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHH-----HSCC
T ss_pred CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHh-----cCCC
Confidence 764333222 23457888888888877533 44555667777777777765432111 111000 0122
Q ss_pred CccEEEccCCcccc-----chhhhcCCCCCcEEEccCCCCC
Q 001271 169 RLSFVSCSCNRLVI-----MDESLQLLPAVETLDLSRNKFA 204 (1111)
Q Consensus 169 ~L~~L~Ls~N~Lss-----LP~~L~~L~nL~~LdLS~N~Ls 204 (1111)
+|+.|++++|.++. ++..+..+++|+.|+|++|.++
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 45555555555543 3444444555555555555444
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=3.8e-19 Score=204.37 Aligned_cols=281 Identities=17% Similarity=0.135 Sum_probs=190.4
Q ss_pred ccCCcEEEecCCCcc-----chHHhhhhcccchhhccCCCccccccccccCCCCCcchhHH-HHhcCCC----CCcEEEc
Q 001271 25 IEGSIVLKLNPAGLH-----YVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLR-RILKLLT----SLKVVSA 94 (1111)
Q Consensus 25 L~~lk~L~Ls~~~L~-----~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp-~~L~~L~----nLk~LdL 94 (1111)
+..++.|+|+.+.+. .++..+..+++|+ .+++++|......+ ..+..++ +|++|+|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~--------------~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 92 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALA--------------ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 92 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCC--------------EEECTTCCCHHHHHHHHHHTTCSTTCCCCEEEC
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcC--------------EEeCCCCcCChHHHHHHHHHHhhCCCceeEEEc
Confidence 456777888877776 3344444444333 35677776544333 3444565 6999999
Q ss_pred cCCCCCC----CCCccCCCCCCCCEEEeeCCCCCccchhhHhh-----hhhhhhhhhccCCCccchh-hhccccccccCC
Q 001271 95 LPPPARD----PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLE-----LRHTLEKIICHNSTNALRH-VFASRIVEIKDS 164 (1111)
Q Consensus 95 s~N~Is~----~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~-----L~~LleLlLs~N~L~sL~~-l~~~~I~~L~~l 164 (1111)
++|.++. .+|..|..+++|++|+|++|.++...+..+.. ..+|.++.+.+|.+..... .+...+
T Consensus 93 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l------ 166 (461)
T 1z7x_W 93 QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL------ 166 (461)
T ss_dssp TTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH------
T ss_pred cCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH------
Confidence 9998874 45778888899999999999987655555544 2357788888887654321 111111
Q ss_pred CCCCCccEEEccCCccccch-hhhc-----CCCCCcEEEccCCCCCCC------CCcCCCCCCcEEECCCCCCCCcc---
Q 001271 165 PQWNRLSFVSCSCNRLVIMD-ESLQ-----LLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDLGFNNLRSIA--- 229 (1111)
Q Consensus 165 ~~L~~L~~L~Ls~N~LssLP-~~L~-----~L~nL~~LdLS~N~Ls~L------~~L~~L~sL~~LdLS~N~Lt~L~--- 229 (1111)
..+++|+.|++++|.++..+ ..+. .+++|+.|+|++|.++.. ..+..+++|++|+|++|.|+...
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence 23468999999999887332 2222 366899999999998872 25667889999999999887532
Q ss_pred ---ccccccccceEeeccCCccCC-----c-ccCCCCCCCCEEEccCCCCCCCchhhhh-----cCCCCCcEEEecCCCC
Q 001271 230 ---AFSEVSCHIVKLVLRNNALTT-----L-RGIENLKSLEGLDISYNIISTFSELEFL-----ASLPYLLNLWLEGNPL 295 (1111)
Q Consensus 230 ---~l~~~L~sL~~L~LS~N~Lt~-----L-~~L~~L~sL~~LdLS~N~Is~l~~l~~L-----~~L~~L~~L~LsgNpL 295 (1111)
.....+++|+.|+|++|.|+. + ..+..+++|+.|+|++|.|++... ..+ ...++|+.|+|++|.+
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA-RLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH-HHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH-HHHHHHhccCCccceeeEcCCCCC
Confidence 122246789999999998887 3 346668889999999998875332 222 2336889999999988
Q ss_pred CCCc-cchhhHhhhcCCCCeeecCCCcCChhH
Q 001271 296 CCSR-WYRAQVFSYFAHPAKLKVDGKEISTRE 326 (1111)
Q Consensus 296 s~~~-~~r~~if~~l~~L~~L~LdgN~It~~E 326 (1111)
+... ......+..++.|+.++|++|.++...
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 7542 222344566788889999998886543
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=6.5e-19 Score=194.15 Aligned_cols=195 Identities=19% Similarity=0.145 Sum_probs=142.9
Q ss_pred ccccCCCCCcchhHHHHh--cCCCCCcEEEccCCCCCCCCC----ccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhh
Q 001271 66 YVSDLGDHRALEQLRRIL--KLLTSLKVVSALPPPARDPTP----LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLE 139 (1111)
Q Consensus 66 ~vLdLs~n~~L~~Lp~~L--~~L~nLk~LdLs~N~Is~~iP----~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~Lle 139 (1111)
..+++++|...+..|..+ ..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|.+++..|..+..+
T Consensus 94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l----- 168 (310)
T 4glp_A 94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF----- 168 (310)
T ss_dssp CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC-----
T ss_pred eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC-----
Confidence 346778887777777776 889999999999999997655 455678999999999999987665554443
Q ss_pred hhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcccc---chh--hhcCCCCCcEEEccCCCCCCCCC-----c
Q 001271 140 KIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI---MDE--SLQLLPAVETLDLSRNKFAKVDN-----L 209 (1111)
Q Consensus 140 LlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Lss---LP~--~L~~L~nL~~LdLS~N~Ls~L~~-----L 209 (1111)
++|++|+|++|++.. ++. .+..+++|++|+|++|+|+.++. +
T Consensus 169 ----------------------------~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 169 ----------------------------PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp ----------------------------TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred ----------------------------CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 467777777777653 332 23567778888888887776542 3
Q ss_pred CCCCCCcEEECCCCCCCCc-ccccccc---ccceEeeccCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCC
Q 001271 210 RKCVNLKHLDLGFNNLRSI-AAFSEVS---CHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYL 285 (1111)
Q Consensus 210 ~~L~sL~~LdLS~N~Lt~L-~~l~~~L---~sL~~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L 285 (1111)
..+++|++|+|++|.|+.+ +.....+ ++|++|+|++|+|+.+|... .++|+.|+|++|+|++++. +..+++|
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~~---~~~l~~L 296 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAPQ---PDELPEV 296 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSCCC---TTSCCCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCCch---hhhCCCc
Confidence 5667788888888887776 3333232 67888888888888775321 2788888888888888763 5677888
Q ss_pred cEEEecCCCCCC
Q 001271 286 LNLWLEGNPLCC 297 (1111)
Q Consensus 286 ~~L~LsgNpLs~ 297 (1111)
+.|+|++|+|+.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 888888888864
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=1.3e-18 Score=196.07 Aligned_cols=256 Identities=15% Similarity=0.122 Sum_probs=180.3
Q ss_pred cCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCC----ccCCCCC-CCCEEEeeCCCCCccchhhHhhh-----hhhh
Q 001271 69 DLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP----LSLLPFC-RLKVLELRGCDLSTSAAKGLLEL-----RHTL 138 (1111)
Q Consensus 69 dLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP----~sLs~L~-nL~~LdLS~N~Ls~~~P~~L~~L-----~~Ll 138 (1111)
+++.+...+.+|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|.|+...+..+..+ ++|.
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 456666666777777777778888888888876665 6667777 78888888888887767777765 7788
Q ss_pred hhhhccCCCccchhh-hccccccccCCCCC-CCccEEEccCCccccchh-----hhcCC-CCCcEEEccCCCCCCC----
Q 001271 139 EKIICHNSTNALRHV-FASRIVEIKDSPQW-NRLSFVSCSCNRLVIMDE-----SLQLL-PAVETLDLSRNKFAKV---- 206 (1111)
Q Consensus 139 eLlLs~N~L~sL~~l-~~~~I~~L~~l~~L-~~L~~L~Ls~N~LssLP~-----~L~~L-~nL~~LdLS~N~Ls~L---- 206 (1111)
++++++|.+...... +...+. .+ ++|+.|+|++|.|+..+. .+..+ ++|++|+|++|.|+..
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~------~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLA------AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHH------TSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred EEECcCCcCChHHHHHHHHHHH------hCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 888888876543321 111111 22 589999999999985543 24453 5899999999998852
Q ss_pred --CCcCCCC-CCcEEECCCCCCCCccc-----ccccc-ccceEeeccCCccCC-----c-ccCCC-CCCCCEEEccCCCC
Q 001271 207 --DNLRKCV-NLKHLDLGFNNLRSIAA-----FSEVS-CHIVKLVLRNNALTT-----L-RGIEN-LKSLEGLDISYNII 270 (1111)
Q Consensus 207 --~~L~~L~-sL~~LdLS~N~Lt~L~~-----l~~~L-~sL~~L~LS~N~Lt~-----L-~~L~~-L~sL~~LdLS~N~I 270 (1111)
..+..++ +|++|+|++|.|+.... ....+ ++|+.|+|++|.|+. + ..+.. .++|+.|+|++|.|
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 1344554 89999999999986553 22223 589999999999988 3 23444 45899999999999
Q ss_pred CCCch---hhhhcCCCCCcEEEecCCCCCCCcc----chhhHhhhcCCCCeeecCCCcCChhHHHHH
Q 001271 271 STFSE---LEFLASLPYLLNLWLEGNPLCCSRW----YRAQVFSYFAHPAKLKVDGKEISTRELWER 330 (1111)
Q Consensus 271 s~l~~---l~~L~~L~~L~~L~LsgNpLs~~~~----~r~~if~~l~~L~~L~LdgN~It~~E~~~~ 330 (1111)
+..+. ...+..+++|+.|+|++|.+..... .....+..++.++.++|++|++........
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 98764 1345678899999999998554321 111234455667889999999987754433
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.4e-17 Score=201.81 Aligned_cols=176 Identities=22% Similarity=0.238 Sum_probs=140.6
Q ss_pred hcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhcccccccc
Q 001271 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (1111)
Q Consensus 83 L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~ 162 (1111)
+..|++|+.|+|++|.|.. +| .|..+++|+.|+|++|.|++..| +..
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~----------------------------- 85 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTN----------------------------- 85 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGG-----------------------------
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hcc-----------------------------
Confidence 3568889999999999874 34 58889999999999999987443 332
Q ss_pred CCCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEee
Q 001271 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (1111)
Q Consensus 163 ~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~ 242 (1111)
+++|+.|+|++|.|+.+| .+..+++|+.|+|++|.|..++.+..+++|+.|+|++|.|+.++ ....+++|+.|+
T Consensus 86 ----l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 159 (605)
T 1m9s_A 86 ----LKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLS 159 (605)
T ss_dssp ----CTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCG-GGGSCTTCSEEE
T ss_pred ----CCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCch-hhcccCCCCEEE
Confidence 347888888888888775 67788888888888888888888888888888888888888873 344568888888
Q ss_pred ccCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001271 243 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (1111)
Q Consensus 243 LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~ 300 (1111)
|++|.|..++.+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|++...+.
T Consensus 160 Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 160 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEECCSEEEECCCC
T ss_pred CcCCcCCCchhhccCCCCCEEECcCCCCCCCh---HHccCCCCCEEEccCCcCcCCcc
Confidence 88888888866888888888888888888865 46788888888888888876543
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=2e-17 Score=175.16 Aligned_cols=201 Identities=15% Similarity=0.174 Sum_probs=168.4
Q ss_pred CCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCC-CccchhhhccccccccCCCCCCCccEEEccC
Q 001271 99 ARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVFASRIVEIKDSPQWNRLSFVSCSC 177 (1111)
Q Consensus 99 Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~-L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~ 177 (1111)
++ .+|. +. ++|++|+|++|.|++..+..+..+++|..+.+.+|. +..++...+ ..+++|++|++++
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f---------~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF---------YNLSKVTHIEIRN 89 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTE---------ESCTTCCEEEEEE
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHc---------CCCcCCcEEECCC
Confidence 44 5666 44 489999999999998777789999999999999996 777664322 3467999999998
Q ss_pred -Cccccchh-hhcCCCCCcEEEccCCCCCCCCCcCCCCCCc---EEECCCC-CCCCcccc-ccccccce-EeeccCCccC
Q 001271 178 -NRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKCVNLK---HLDLGFN-NLRSIAAF-SEVSCHIV-KLVLRNNALT 249 (1111)
Q Consensus 178 -N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~---~LdLS~N-~Lt~L~~l-~~~L~sL~-~L~LS~N~Lt 249 (1111)
|.|+.+|. .|..+++|+.|+|++|.++.++.+..+++|+ .|++++| .|+.+++. +..+++|+ .|+|++|.++
T Consensus 90 ~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 90 TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp ETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 99998875 7889999999999999999998888888888 9999999 99988864 45589999 9999999999
Q ss_pred Ccc--cCCCCCCCCEEEccCCC-CCCCchhhhhcCC-CCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCC
Q 001271 250 TLR--GIENLKSLEGLDISYNI-ISTFSELEFLASL-PYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (1111)
Q Consensus 250 ~L~--~L~~L~sL~~LdLS~N~-Is~l~~l~~L~~L-~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN 320 (1111)
.++ .+.. ++|+.|+|++|+ |+.+++ ..+..+ ++|+.|+|++|+++..+.. .++.++.+.+.++
T Consensus 170 ~i~~~~~~~-~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~l~~~------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 SVQGYAFNG-TKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTSVTALPSK------GLEHLKELIARNT 236 (239)
T ss_dssp EECTTTTTT-CEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCCCCCCCCT------TCTTCSEEECTTC
T ss_pred ccCHhhcCC-CCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCccccCChh------HhccCceeeccCc
Confidence 885 3444 899999999995 998875 678888 9999999999999865432 4677888888765
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=3.4e-18 Score=192.67 Aligned_cols=250 Identities=17% Similarity=0.125 Sum_probs=182.0
Q ss_pred EEEecCCCccchHHhhhh-cccchhhccCCCccccccccccCCCCCcchhHH----HHhcCCC-CCcEEEccCCCCCCCC
Q 001271 30 VLKLNPAGLHYVQSRLEA-LRELERLLAGAPLDYLRAYVSDLGDHRALEQLR----RILKLLT-SLKVVSALPPPARDPT 103 (1111)
Q Consensus 30 ~L~Ls~~~L~~Lp~~L~~-L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp----~~L~~L~-nLk~LdLs~N~Is~~i 103 (1111)
.++|+.+++....+.+.. ..+|+ .+++++|.....-+ ..+..++ +|++|+|++|.+.+..
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~--------------~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 67 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVT--------------SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN 67 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCC--------------EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC
T ss_pred ccccccccchHHHHHHHhCCCCce--------------EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH
Confidence 356777777754443322 22233 35666666443333 6778888 8999999999988777
Q ss_pred CccCCCC-----CCCCEEEeeCCCCCccchhhHhhh-----hhhhhhhhccCCCccchhhhccccccccCCCC-CCCccE
Q 001271 104 PLSLLPF-----CRLKVLELRGCDLSTSAAKGLLEL-----RHTLEKIICHNSTNALRHVFASRIVEIKDSPQ-WNRLSF 172 (1111)
Q Consensus 104 P~sLs~L-----~nL~~LdLS~N~Ls~~~P~~L~~L-----~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~-L~~L~~ 172 (1111)
+..|..+ ++|++|+|++|.+++..+..+... ++|..+++++|.+.......... .+.. .++|++
T Consensus 68 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-----~l~~~~~~L~~ 142 (362)
T 3goz_A 68 SDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ-----AFSNLPASITS 142 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH-----HHTTSCTTCCE
T ss_pred HHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH-----HHHhCCCceeE
Confidence 7666664 889999999999987777665554 77888889888866544321110 0112 248999
Q ss_pred EEccCCccc-----cchhhhcCCC-CCcEEEccCCCCCCCC------CcCCC-CCCcEEECCCCCCCC-----ccccccc
Q 001271 173 VSCSCNRLV-----IMDESLQLLP-AVETLDLSRNKFAKVD------NLRKC-VNLKHLDLGFNNLRS-----IAAFSEV 234 (1111)
Q Consensus 173 L~Ls~N~Ls-----sLP~~L~~L~-nL~~LdLS~N~Ls~L~------~L~~L-~sL~~LdLS~N~Lt~-----L~~l~~~ 234 (1111)
|+|++|.|+ .++..+..++ +|++|+|++|.|+... .+..+ ++|+.|+|++|.|+. ++.....
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 999999999 5566677776 9999999999998753 34555 599999999999987 4433333
Q ss_pred -cccceEeeccCCccCCcc------cCCCCCCCCEEEccCCCCCCCchh------hhhcCCCCCcEEEecCCCCCCC
Q 001271 235 -SCHIVKLVLRNNALTTLR------GIENLKSLEGLDISYNIISTFSEL------EFLASLPYLLNLWLEGNPLCCS 298 (1111)
Q Consensus 235 -L~sL~~L~LS~N~Lt~L~------~L~~L~sL~~LdLS~N~Is~l~~l------~~L~~L~~L~~L~LsgNpLs~~ 298 (1111)
.++|+.|+|++|.|+..+ .+..+++|+.|+|++|.+..+... ..+..+++|+.|++++|++...
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 458999999999998862 467889999999999997765541 2456788899999999999754
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=3.1e-17 Score=197.50 Aligned_cols=179 Identities=19% Similarity=0.174 Sum_probs=116.1
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCC
Q 001271 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (1111)
Q Consensus 87 ~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~ 166 (1111)
.+|+.|+|++|.|++ +|..+. ++|++|+|++|.|+. +| ..+++|..+++.+|++..++. +.
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~ip~-l~----------- 119 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLSTLPE-LP----------- 119 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC-CC-----------
T ss_pred CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCCcch-hh-----------
Confidence 489999999999986 776663 899999999999985 55 335556666666665554433 11
Q ss_pred CCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCC
Q 001271 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 246 (1111)
Q Consensus 167 L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N 246 (1111)
.+|++|+|++|.|+.+|. .+++|+.|+|++|.|+.++. .+++|+.|+|++|.|+.++. .. ++|+.|+|++|
T Consensus 120 -~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 120 -ASLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp -TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS
T ss_pred -cCCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC
Confidence 156666666666666665 45666666666666666654 45666666666666666655 22 56666666666
Q ss_pred ccCCcccCCCCCCC-------CEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCC
Q 001271 247 ALTTLRGIENLKSL-------EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCC 297 (1111)
Q Consensus 247 ~Lt~L~~L~~L~sL-------~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~ 297 (1111)
.|+.+|.+.. +| +.|+|++|.|+.+| ..+..+++|+.|+|++|++++
T Consensus 191 ~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp--~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 191 LLESLPAVPV--RNHHSEETEIFFRCRENRITHIP--ENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCSSCCCCC----------CCEEEECCSSCCCCCC--GGGGGSCTTEEEECCSSSCCH
T ss_pred CCCchhhHHH--hhhcccccceEEecCCCcceecC--HHHhcCCCCCEEEeeCCcCCC
Confidence 6666654332 55 66666666666666 334446666666666666653
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=1e-16 Score=171.39 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=133.2
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCC
Q 001271 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (1111)
Q Consensus 87 ~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~ 166 (1111)
++|+.|+|++|.+.+..+..|..+++|++|+|++|.|++..+..+..
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------------------------- 81 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD--------------------------------- 81 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT---------------------------------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc---------------------------------
Confidence 58999999999999888889999999999999999998755544433
Q ss_pred CCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccc-cccccccceEee
Q 001271 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLV 242 (1111)
Q Consensus 167 L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~ 242 (1111)
+++|++|+|++|+|+.+|. .|..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|+.+++ .+..+++|+.|+
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 4588999999999997775 6788999999999999999876 37889999999999999998887 455678999999
Q ss_pred ccCCccCCcc--cCCCCCCCCEEEccCCCCCCC
Q 001271 243 LRNNALTTLR--GIENLKSLEGLDISYNIISTF 273 (1111)
Q Consensus 243 LS~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l 273 (1111)
|++|.|+.++ .+..+++|+.|+|++|.+...
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999999984 688899999999999999875
No 91
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=2.3e-19 Score=215.73 Aligned_cols=198 Identities=20% Similarity=0.196 Sum_probs=148.6
Q ss_pred CCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCC-Cccchh---------hhccccccccCCCCCCCccEEE---
Q 001271 108 LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRH---------VFASRIVEIKDSPQWNRLSFVS--- 174 (1111)
Q Consensus 108 s~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~-L~sL~~---------l~~~~I~~L~~l~~L~~L~~L~--- 174 (1111)
..+++|+.|+|++|.|+ .+|..++.+.+|.++.+.+|. +..++. ..+..+ ..+++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l------~~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL------QYFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHH------HHHHHHHHHCGGG
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHH------HHHHhcccCcchh
Confidence 45667777777777775 467777777777777664442 000000 000111 1123444444
Q ss_pred -----------ccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeec
Q 001271 175 -----------CSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (1111)
Q Consensus 175 -----------Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~L 243 (1111)
+.+|.|+.+|. ..|+.|+|++|.|+.+|.+..+++|+.|+|++|.|+.+|.....+++|+.|+|
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred hcccchhhhhhhhcccccccCc-----cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence 44444444433 25899999999999998899999999999999999999887778899999999
Q ss_pred cCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeec
Q 001271 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKV 317 (1111)
Q Consensus 244 S~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~L 317 (1111)
++|.|+.+|.+..+++|+.|+|++|.|++++....+..+++|+.|+|++|+++..+.+...++..++.|+.++|
T Consensus 494 s~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 494 SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999999999999999999999841167899999999999999999887777777778888888754
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=8.2e-18 Score=182.36 Aligned_cols=171 Identities=21% Similarity=0.197 Sum_probs=119.6
Q ss_pred CCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCC
Q 001271 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSP 165 (1111)
Q Consensus 86 L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~ 165 (1111)
+.+|..+++++|.+++. + .+..+++|++|+|++|.|+. ++ .+..
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~-------------------------------- 61 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQF-------------------------------- 61 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGG--------------------------------
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhh--------------------------------
Confidence 33445555666666532 2 45666777777777777654 22 2211
Q ss_pred CCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccC
Q 001271 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRN 245 (1111)
Q Consensus 166 ~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~ 245 (1111)
+++|+.|+|++|+|+.+|. +..+++|+.|+|++|+|+.++.+.. ++|+.|+|++|.|+.++. ...+++|+.|+|++
T Consensus 62 -l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 62 -FTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRN 137 (263)
T ss_dssp -CTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTT
T ss_pred -CCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChh-hcCcccccEEECCC
Confidence 3467777777777777766 7777777777777777777765555 778888888887777654 33467788888888
Q ss_pred CccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001271 246 NALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (1111)
Q Consensus 246 N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~ 299 (1111)
|+|+.++.+..+++|+.|+|++|.|+++ ..+..+++|+.|+|++|++++.+
T Consensus 138 N~i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 138 NKLKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp SCCCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CcCCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCCc
Confidence 8888777777788888888888888876 35677888888888888887664
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=3.2e-16 Score=169.75 Aligned_cols=195 Identities=21% Similarity=0.245 Sum_probs=160.9
Q ss_pred CcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCC
Q 001271 89 LKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWN 168 (1111)
Q Consensus 89 Lk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~ 168 (1111)
+..+++..+.+.+. ..+..+++|+.|++++|.++.. + .+. .++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~-~l~---------------------------------~l~ 63 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQ---------------------------------YLP 63 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC-T-TGG---------------------------------GCT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcccc-c-ccc---------------------------------cCC
Confidence 34455666666543 2356678999999999988642 1 222 245
Q ss_pred CccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccc-ccccccceEeeccC
Q 001271 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRN 245 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L~LS~ 245 (1111)
+|++|+|++|.++.++ .+..+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.+++. ...+++|++|+|++
T Consensus 64 ~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 64 NVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp TCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence 8999999999999874 7889999999999999999976 488999999999999999988874 45689999999999
Q ss_pred CccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCC
Q 001271 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (1111)
Q Consensus 246 N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It 323 (1111)
|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.+...+ ...+..++.|+.++|.+|++.
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVP---DGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBC
T ss_pred CccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccC---HHHHhCCcCCCEEEccCCCcc
Confidence 9999985 37899999999999999999885 56789999999999999998653 345677899999999999987
Q ss_pred hh
Q 001271 324 TR 325 (1111)
Q Consensus 324 ~~ 325 (1111)
+.
T Consensus 219 ~~ 220 (272)
T 3rfs_A 219 CT 220 (272)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=2.6e-17 Score=181.55 Aligned_cols=238 Identities=15% Similarity=0.130 Sum_probs=164.9
Q ss_pred cccCCCCCcchhHHHHhcCC--CCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCcc-chhhHhhhhhhhhhhhc
Q 001271 67 VSDLGDHRALEQLRRILKLL--TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS-AAKGLLELRHTLEKIIC 143 (1111)
Q Consensus 67 vLdLs~n~~L~~Lp~~L~~L--~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~-~P~~L~~L~~LleLlLs 143 (1111)
.++++++... +..+..+ ++|+.|++++|.+.+..+. +..+++|++|+|++|.+++. ++..+..+++|..+.+.
T Consensus 51 ~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 51 TLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp EEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred eeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 4567666544 4556666 8999999999999877665 66799999999999999865 67778888888888888
Q ss_pred cCCCccchhhhccccccccCCCCCCCccEEEccCC-ccc--cchhhhcCCCCCcEEEccCC-CCCC--CC-CcCCCC-CC
Q 001271 144 HNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN-RLV--IMDESLQLLPAVETLDLSRN-KFAK--VD-NLRKCV-NL 215 (1111)
Q Consensus 144 ~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N-~Ls--sLP~~L~~L~nL~~LdLS~N-~Ls~--L~-~L~~L~-sL 215 (1111)
+|.+.... ... +..+++|++|+|++| .++ .++..+..+++|++|+|++| .++. ++ .+..++ +|
T Consensus 127 ~~~l~~~~---~~~------l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 127 GLRLSDPI---VNT------LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp TCBCCHHH---HHH------HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CcccCHHH---HHH------HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 87644211 111 123568888888888 677 46667778888888888888 7775 33 466777 88
Q ss_pred cEEECCCCC--CC--CccccccccccceEeeccCCc-cCC--cccCCCCCCCCEEEccCCC-CCCCchhhhhcCCCCCcE
Q 001271 216 KHLDLGFNN--LR--SIAAFSEVSCHIVKLVLRNNA-LTT--LRGIENLKSLEGLDISYNI-ISTFSELEFLASLPYLLN 287 (1111)
Q Consensus 216 ~~LdLS~N~--Lt--~L~~l~~~L~sL~~L~LS~N~-Lt~--L~~L~~L~sL~~LdLS~N~-Is~l~~l~~L~~L~~L~~ 287 (1111)
++|+|++|. ++ .++.....+++|+.|+|++|. ++. ++.+..+++|+.|+|++|. +.. ..+..+..+++|+.
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-ETLLELGEIPTLKT 276 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-GGGGGGGGCTTCCE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-HHHHHHhcCCCCCE
Confidence 888888884 43 344455557888888888887 554 3567778888888888885 322 12235677888888
Q ss_pred EEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCCh
Q 001271 288 LWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 288 L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~ 324 (1111)
|+|++| +.... ...+. ..+..+++++|.++.
T Consensus 277 L~l~~~-i~~~~--~~~l~---~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 277 LQVFGI-VPDGT--LQLLK---EALPHLQINCSHFTT 307 (336)
T ss_dssp EECTTS-SCTTC--HHHHH---HHSTTSEESCCCSCC
T ss_pred EeccCc-cCHHH--HHHHH---hhCcceEEecccCcc
Confidence 888888 43221 11111 224555577777753
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=2e-16 Score=173.79 Aligned_cols=186 Identities=22% Similarity=0.235 Sum_probs=157.3
Q ss_pred EEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCcc
Q 001271 92 VSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLS 171 (1111)
Q Consensus 92 LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~ 171 (1111)
+.+..+.+.+.. .+..+++|+.|++++|.+... + .+. .+++|+
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~---------------------------------~l~~L~ 71 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQ---------------------------------YLPNVT 71 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGG---------------------------------GCTTCC
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHh---------------------------------cCCCCC
Confidence 345556555432 345678999999999988752 2 122 245899
Q ss_pred EEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCc
Q 001271 172 FVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL 251 (1111)
Q Consensus 172 ~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L 251 (1111)
.|+|++|+++.++. +..+++|+.|+|++|.++.++.+..+++|++|+|++|.|+.++. ...+++|+.|+|++|.|+.+
T Consensus 72 ~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~-l~~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 72 KLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDI 149 (291)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred EEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChh-hcCCCCCCEEEccCCcCCcc
Confidence 99999999999877 99999999999999999999999999999999999999999854 34579999999999999999
Q ss_pred ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCCh
Q 001271 252 RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 252 ~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~ 324 (1111)
+.+..+++|+.|+|++|.|+++++ +..+++|+.|+|++|.++..+ .+..++.|+.++|.+|++..
T Consensus 150 ~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~-----~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR-----ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG-----GGTTCTTCSEEEEEEEEEEC
T ss_pred hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCCh-----hhccCCCCCEEECcCCcccC
Confidence 889999999999999999999874 789999999999999998542 26678999999999999864
No 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=1.5e-16 Score=179.65 Aligned_cols=177 Identities=25% Similarity=0.264 Sum_probs=133.6
Q ss_pred cEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCC
Q 001271 90 KVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNR 169 (1111)
Q Consensus 90 k~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~ 169 (1111)
+.+++++|.+. .+|..+. +.|+.|+|++|.|++..+..+. ..+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~--------------------------------~~l~~ 65 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTP--------------------------------TRLTN 65 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSS--------------------------------SCCTT
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhh--------------------------------hcccc
Confidence 57888888887 4666554 4688889988888764443221 02457
Q ss_pred ccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccC
Q 001271 170 LSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (1111)
Q Consensus 170 L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~ 245 (1111)
|+.|+|++|+|+.++. .|..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 8888888888887764 6888888888888888888764 47788888888888888887754 444578888888888
Q ss_pred CccCCcc--cC---CCCCCCCEEEccCCCCCCCchhhhhcCCCC--CcEEEecCCCCCCCccch
Q 001271 246 NALTTLR--GI---ENLKSLEGLDISYNIISTFSELEFLASLPY--LLNLWLEGNPLCCSRWYR 302 (1111)
Q Consensus 246 N~Lt~L~--~L---~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~--L~~L~LsgNpLs~~~~~r 302 (1111)
|.|+.++ .+ ..+++|+.|+|++|.|+.++. ..+..++. |+.|+|.+|++.|.+...
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~~~l~~l~l~~N~~~C~C~l~ 208 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLYLHNNPLECDCKLY 208 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHSCHHHHTTEECCSSCEECCHHHH
T ss_pred CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhccHhhcceEEecCCCccCCcCcH
Confidence 8888874 23 568999999999999998875 56777776 478999999999887543
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=2e-16 Score=177.64 Aligned_cols=224 Identities=14% Similarity=0.036 Sum_probs=166.5
Q ss_pred chhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccch-hhHhhhhhhhhhh-hccCCCccchhh
Q 001271 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKI-ICHNSTNALRHV 153 (1111)
Q Consensus 76 L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P-~~L~~L~~LleLl-Ls~N~L~sL~~l 153 (1111)
+..+|..+ .++|++|+|++|+|+...+..|.++++|++|+|++|.+.+.+| ..|.++.++++++ +..|++..++..
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 45566543 3679999999999986666678999999999999999876554 4567777776644 556777666432
Q ss_pred hccccccccCCCCCCCccEEEccCCccccchh-hhcCCCCCcEEEccC-CCCCCCC--CcCCC-CCCcEEECCCCCCCCc
Q 001271 154 FASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKC-VNLKHLDLGFNNLRSI 228 (1111)
Q Consensus 154 ~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~-N~Ls~L~--~L~~L-~sL~~LdLS~N~Lt~L 228 (1111)
. +..+++|++|++++|+|+.+|. .+....++..|++.+ |.+..++ .+..+ ..|+.|+|++|+|+.+
T Consensus 99 ~---------f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 99 A---------FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp S---------BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred h---------hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 2 2456789999999999998876 556677788888865 6787764 45555 4688999999999998
Q ss_pred cccccccccceEeecc-CCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCC-CCCCccchhh
Q 001271 229 AAFSEVSCHIVKLVLR-NNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNP-LCCSRWYRAQ 304 (1111)
Q Consensus 229 ~~l~~~L~sL~~L~LS-~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNp-Ls~~~~~r~~ 304 (1111)
+...+...+|+.|++. +|.++.++ .|..+++|+.|+|++|+|+.+|. ..+.+|+.|.+.++. +...+
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L~~l~~~~l~~lP----- 240 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS----YGLENLKKLRARSTYNLKKLP----- 240 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS----SSCTTCCEEECTTCTTCCCCC-----
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh----hhhccchHhhhccCCCcCcCC-----
Confidence 8876667889999997 47888885 57899999999999999999985 335566677665543 43333
Q ss_pred HhhhcCCCCeeecCC
Q 001271 305 VFSYFAHPAKLKVDG 319 (1111)
Q Consensus 305 if~~l~~L~~L~Ldg 319 (1111)
.+..++.|+.+.+..
T Consensus 241 ~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTTCCSCCEEECSC
T ss_pred CchhCcChhhCcCCC
Confidence 245677788888753
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=4.9e-16 Score=168.43 Aligned_cols=171 Identities=19% Similarity=0.297 Sum_probs=147.8
Q ss_pred hhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCC
Q 001271 133 ELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKC 212 (1111)
Q Consensus 133 ~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L 212 (1111)
.+..+..+.+..|.+..+.. +..+++|+.|++++|.|+.+| .+..+++|+.|+|++|.|+.++.+..+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~-----------~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVS-----------QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDL 84 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEEC-----------HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTC
T ss_pred HHHHHHHHHhcCCCcccccc-----------hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccC
Confidence 45566667777776655542 123568999999999999997 788999999999999999998879999
Q ss_pred CCCcEEECCCCCCCCccccccccccceEeeccCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecC
Q 001271 213 VNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEG 292 (1111)
Q Consensus 213 ~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~Lsg 292 (1111)
++|+.|+|++|+|+.++.... ++|+.|+|++|.|+.++.+..+++|+.|+|++|+|++++ .+..+++|+.|+|++
T Consensus 85 ~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHG 159 (263)
T ss_dssp SSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTT
T ss_pred CCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCC
Confidence 999999999999999887655 899999999999999999999999999999999999986 478899999999999
Q ss_pred CCCCCCccchhhHhhhcCCCCeeecCCCcCChh
Q 001271 293 NPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (1111)
Q Consensus 293 NpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~ 325 (1111)
|++... ..+..++.|+.++|.+|++...
T Consensus 160 N~i~~~-----~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 160 NEITNT-----GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBC-----TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcCcch-----HHhccCCCCCEEeCCCCcccCC
Confidence 999855 3466788999999999998643
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=1.2e-15 Score=161.76 Aligned_cols=132 Identities=24% Similarity=0.335 Sum_probs=107.6
Q ss_pred CCccEEEccCCccccc-hhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccc-ccccccceEeec
Q 001271 168 NRLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVL 243 (1111)
Q Consensus 168 ~~L~~L~Ls~N~LssL-P~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L~L 243 (1111)
++|++|+|++|.|+.+ |..|..+++|+.|+|++|.|..++ .+..+++|+.|+|++|.|+.+++. +..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 4788888888888866 457888888888888888888875 467888888888888888887764 345788888888
Q ss_pred cCCccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001271 244 RNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (1111)
Q Consensus 244 S~N~Lt~L~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~ 300 (1111)
++|.|+.++ .+..+++|+.|+|++|+|+.++. ..+..+++|+.|+|++|++.|.+.
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccCCcc
Confidence 888888884 67788888888888888888875 567888888888888888887763
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=2.8e-16 Score=176.45 Aligned_cols=236 Identities=14% Similarity=0.095 Sum_probs=178.6
Q ss_pred cEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHH-HhcCCCCCcEEEccCCCCCCCCC-cc
Q 001271 29 IVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRR-ILKLLTSLKVVSALPPPARDPTP-LS 106 (1111)
Q Consensus 29 k~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~-~L~~L~nLk~LdLs~N~Is~~iP-~s 106 (1111)
++++-+.++|+.+|..+. .++ ..++|++|+ +..+|. .|.++++|++|+|++|++.+.+| ..
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l--------------~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNA--------------IELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTC--------------SEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred CEEEecCCCCCccCcCcC--CCC--------------CEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence 567788889999887652 111 225566665 455664 68999999999999999876555 46
Q ss_pred CCCCCCCCE-EEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccC-Cccccch
Q 001271 107 LLPFCRLKV-LELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMD 184 (1111)
Q Consensus 107 Ls~L~nL~~-LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~-N~LssLP 184 (1111)
|.++++|.. +.+..|+|+...|..|..+++|..+.+.+|.+..++.... ....++..|++.+ |++..+|
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~---------~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK---------IHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT---------CCBSSCEEEEEESCTTCCEEC
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh---------cccchhhhhhhcccccccccc
Confidence 788988775 6677899998888889999999999999998776654321 1234677888865 6888887
Q ss_pred h-hhcCCC-CCcEEEccCCCCCCCC-CcCCCCCCcEEECC-CCCCCCcccc-ccccccceEeeccCCccCCcccCCCCCC
Q 001271 185 E-SLQLLP-AVETLDLSRNKFAKVD-NLRKCVNLKHLDLG-FNNLRSIAAF-SEVSCHIVKLVLRNNALTTLRGIENLKS 259 (1111)
Q Consensus 185 ~-~L~~L~-nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS-~N~Lt~L~~l-~~~L~sL~~L~LS~N~Lt~L~~L~~L~s 259 (1111)
. .|..++ .++.|+|++|+|+.++ ......+|+.|+++ +|.++.++.. +..+++|+.|+|++|+|+.+|. ..+.+
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~ 224 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLEN 224 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTT
T ss_pred ccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhcc
Confidence 6 556654 6899999999999985 45566789999997 4789988864 4568999999999999999963 33566
Q ss_pred CCEEEccC-CCCCCCchhhhhcCCCCCcEEEecCCC
Q 001271 260 LEGLDISY-NIISTFSELEFLASLPYLLNLWLEGNP 294 (1111)
Q Consensus 260 L~~LdLS~-N~Is~l~~l~~L~~L~~L~~L~LsgNp 294 (1111)
|+.|.+.+ +.++.+|. +..+++|+.+++.++.
T Consensus 225 L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPT---LEKLVALMEASLTYPS 257 (350)
T ss_dssp CCEEECTTCTTCCCCCC---TTTCCSCCEEECSCHH
T ss_pred chHhhhccCCCcCcCCC---chhCcChhhCcCCCCc
Confidence 77777654 46777774 6788999999997543
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=2.6e-15 Score=158.35 Aligned_cols=131 Identities=19% Similarity=0.292 Sum_probs=80.8
Q ss_pred ccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCC--CCcCCCCCCcEEECCCCCCCCcccc-ccccccceEeeccC
Q 001271 170 LSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRN 245 (1111)
Q Consensus 170 L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L--~~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L~LS~ 245 (1111)
|+.|+|++|+|+.+|. .|..+++|+.|+|++|.|+.+ ..|..+++|++|+|++|.|+.+++. +..+++|+.|+|++
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence 3344444444443332 344444444444444444443 2344445555555555555544442 22345566666666
Q ss_pred CccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 001271 246 NALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (1111)
Q Consensus 246 N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~ 301 (1111)
|.|+.+ ..+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.+..
T Consensus 114 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 114 NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 666555 257788899999999999999885 6688899999999999999988754
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=2.7e-15 Score=180.71 Aligned_cols=184 Identities=20% Similarity=0.252 Sum_probs=153.9
Q ss_pred CCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccccchhhhcCCC
Q 001271 112 RLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLP 191 (1111)
Q Consensus 112 nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~~L~~L~ 191 (1111)
+|+.|+|++|.|++ +|..+. ++|..+.+.+|.+..++ ..+++|++|+|++|.|+.+|. +..
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~ip-------------~~l~~L~~L~Ls~N~l~~ip~-l~~-- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALISLP-------------ELPASLEYLDACDNRLSTLPE-LPA-- 120 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSCCC-------------CCCTTCCEEECCSSCCSCCCC-CCT--
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcccc-------------cccCCCCEEEccCCCCCCcch-hhc--
Confidence 89999999999988 665553 67888999999877655 125699999999999999988 655
Q ss_pred CCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCCcccCCCCCCCCEEEccCCCCC
Q 001271 192 AVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIIS 271 (1111)
Q Consensus 192 nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is 271 (1111)
+|+.|+|++|.|+.++. .+++|+.|+|++|.|+.++. .+++|+.|+|++|.|+.++.+. ++|+.|+|++|.|+
T Consensus 121 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLE 193 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCS
T ss_pred CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCC
Confidence 99999999999999887 78999999999999999887 4689999999999999997754 89999999999999
Q ss_pred CCchhhhhcCCCCC-------cEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChhHHHHH
Q 001271 272 TFSELEFLASLPYL-------LNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWER 330 (1111)
Q Consensus 272 ~l~~l~~L~~L~~L-------~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~E~~~~ 330 (1111)
.+|. +.. +| +.|+|++|.|+..+. .++ .++.|+.++|++|+++......-
T Consensus 194 ~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~---~l~-~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 194 SLPA---VPV--RNHHSEETEIFFRCRENRITHIPE---NIL-SLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp SCCC---CC----------CCEEEECCSSCCCCCCG---GGG-GSCTTEEEECCSSSCCHHHHHHH
T ss_pred chhh---HHH--hhhcccccceEEecCCCcceecCH---HHh-cCCCCCEEEeeCCcCCCcCHHHH
Confidence 9884 333 66 999999999986542 233 48899999999999987654433
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=1.5e-15 Score=184.11 Aligned_cols=190 Identities=21% Similarity=0.226 Sum_probs=158.1
Q ss_pred CcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCC
Q 001271 89 LKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWN 168 (1111)
Q Consensus 89 Lk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~ 168 (1111)
+..+.|..+.+.+..+ +..|++|+.|+|++|.|... + .+. .++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~---------------------------------~l~ 65 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQ---------------------------------YLP 65 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGG---------------------------------GCT
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHc---------------------------------cCC
Confidence 3344555666654332 45677888888888877642 2 121 245
Q ss_pred CccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCcc
Q 001271 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNAL 248 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~L 248 (1111)
+|+.|+|++|.|+.++. +..+++|+.|+|++|.|..++.+..+++|+.|+|++|.|+.++. ...+++|+.|+|++|.|
T Consensus 66 ~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 66 NVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKI 143 (605)
T ss_dssp TCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCC
T ss_pred CCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCcc
Confidence 89999999999998876 89999999999999999999999999999999999999999865 34579999999999999
Q ss_pred CCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChh
Q 001271 249 TTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (1111)
Q Consensus 249 t~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~ 325 (1111)
+.++.+..+++|+.|+|++|.|..+++ +..+++|+.|+|++|+|...+ .+..++.|+.|+|.+|++...
T Consensus 144 ~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~-----~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 144 TDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR-----ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCGGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG-----GGTTCTTCSEEECCSEEEECC
T ss_pred CCchhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCCh-----HHccCCCCCEEEccCCcCcCC
Confidence 999889999999999999999999874 789999999999999997542 366789999999999988643
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=1.5e-16 Score=175.39 Aligned_cols=240 Identities=16% Similarity=0.118 Sum_probs=164.6
Q ss_pred CcEEEecCCCccchHHhhhhc--ccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCC-CC
Q 001271 28 SIVLKLNPAGLHYVQSRLEAL--RELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDP-TP 104 (1111)
Q Consensus 28 lk~L~Ls~~~L~~Lp~~L~~L--~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~-iP 104 (1111)
.+.|+++.+.+. +..+..+ ..+.. +++.++...+..+. +..+++|+.|+|++|.+.+. +|
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~--------------L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIA--------------FRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSE--------------EECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH
T ss_pred heeeccccccCC--HHHHHhhhhccceE--------------EEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH
Confidence 578899888776 4444444 33322 33444433332222 45677888888888877654 66
Q ss_pred ccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccC-CCcc--chhhhccccccccCCCCCCCccEEEccCC-cc
Q 001271 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN-STNA--LRHVFASRIVEIKDSPQWNRLSFVSCSCN-RL 180 (1111)
Q Consensus 105 ~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N-~L~s--L~~l~~~~I~~L~~l~~L~~L~~L~Ls~N-~L 180 (1111)
..+..+++|++|+|++|.+++..+..+..+++|..+.+.+| .+.. ++..+ ..+++|++|++++| .+
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~----------~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL----------SSCSRLDELNLSWCFDF 181 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH----------HHCTTCCEEECCCCTTC
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH----------hcCCCCCEEcCCCCCCc
Confidence 66777788888888888887777777777777877777777 4442 32222 13568999999999 89
Q ss_pred cc--chhhhcCCC-CCcEEEccCC--CCCC--CC-CcCCCCCCcEEECCCCC-CCC-ccccccccccceEeeccCCc-cC
Q 001271 181 VI--MDESLQLLP-AVETLDLSRN--KFAK--VD-NLRKCVNLKHLDLGFNN-LRS-IAAFSEVSCHIVKLVLRNNA-LT 249 (1111)
Q Consensus 181 ss--LP~~L~~L~-nL~~LdLS~N--~Ls~--L~-~L~~L~sL~~LdLS~N~-Lt~-L~~l~~~L~sL~~L~LS~N~-Lt 249 (1111)
+. ++..+..++ +|++|+|++| .++. ++ .+..+++|+.|+|++|. ++. .+.....+++|+.|+|++|. +.
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 84 677888899 9999999999 4542 33 56678999999999998 553 33344557999999999995 33
Q ss_pred Cc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001271 250 TL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (1111)
Q Consensus 250 ~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~ 298 (1111)
.. ..+..+++|+.|+|++| ++... +..+. ..|..|++++|.++..
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~-i~~~~-~~~l~--~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI-VPDGT-LQLLK--EALPHLQINCSHFTTI 308 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS-SCTTC-HHHHH--HHSTTSEESCCCSCCT
T ss_pred HHHHHHHhcCCCCCEEeccCc-cCHHH-HHHHH--hhCcceEEecccCccc
Confidence 22 35788999999999999 54422 22232 2355556899998754
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=2.2e-15 Score=155.46 Aligned_cols=124 Identities=15% Similarity=0.232 Sum_probs=62.9
Q ss_pred CccEEEccCCccccchhhhcCCCCCcEEEccCCCCCC--CCCcCCCCCCcEEECCCCCCCC-ccccccccccceEeeccC
Q 001271 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAK--VDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLRN 245 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~--L~~L~~L~sL~~LdLS~N~Lt~-L~~l~~~L~sL~~L~LS~ 245 (1111)
+|++|++++|.++.++ .+..+++|++|+|++|.++. ++.+..+++|++|+|++|.++. .+.....+++|+.|+|++
T Consensus 67 ~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 67 NIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145 (197)
T ss_dssp TCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCS
T ss_pred CCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccC
Confidence 3444444444333332 34444445555555555443 2344455555555555555543 122223345555555555
Q ss_pred Cc-cCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCC
Q 001271 246 NA-LTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (1111)
Q Consensus 246 N~-Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs 296 (1111)
|. ++.++.+..+++|+.|+|++|.|++++ .+..+++|+.|++++|+|.
T Consensus 146 n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 146 NGAITDIMPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CTBCCCCGGGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC---
T ss_pred CCCccccHhhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcccC
Confidence 54 555555556666666666666666654 3456666677777766664
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=157.08 Aligned_cols=132 Identities=20% Similarity=0.305 Sum_probs=113.4
Q ss_pred CccEEEccCCccccchh--hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccc-ccccccceEeec
Q 001271 169 RLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVL 243 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssLP~--~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L~L 243 (1111)
.++.|+|++|+|+.++. .|..+++|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.+++. +..+++|++|+|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 56789999999997743 4788999999999999999875 688999999999999999988764 455789999999
Q ss_pred cCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 001271 244 RNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (1111)
Q Consensus 244 S~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~ 301 (1111)
++|.|+.+ ..+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|++.|.+..
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcCCcCCCch
Confidence 99999988 368889999999999999999865 6788999999999999999988654
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=2.6e-15 Score=154.96 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=129.4
Q ss_pred CCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCC-ccccccccccceEeeccC
Q 001271 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLRN 245 (1111)
Q Consensus 167 L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~-L~~l~~~L~sL~~L~LS~ 245 (1111)
+++|+.|++++|.|+.+| .+..+++|++|++++|.+..++.+..+++|++|++++|.++. .+.....+++|++|+|++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 458999999999999998 789999999999999999999899999999999999999987 344455689999999999
Q ss_pred CccCC--cccCCCCCCCCEEEccCCC-CCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcC
Q 001271 246 NALTT--LRGIENLKSLEGLDISYNI-ISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (1111)
Q Consensus 246 N~Lt~--L~~L~~L~sL~~LdLS~N~-Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~I 322 (1111)
|.++. +..+..+++|+.|+|++|. ++.++ .+..+++|+.|++++|+++..+ .+..++.|+.+++.+|+|
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~-----~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR-----GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT-----TGGGCSSCCEEEECBC--
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH-----HhccCCCCCEEEeeCccc
Confidence 99998 3578999999999999998 88876 4788999999999999998643 466789999999999998
Q ss_pred Ch
Q 001271 323 ST 324 (1111)
Q Consensus 323 t~ 324 (1111)
..
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 63
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=2.8e-17 Score=197.59 Aligned_cols=200 Identities=17% Similarity=0.096 Sum_probs=159.7
Q ss_pred cCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCC-------------CCccchhhHhhhhhhhhhh-hccCCCcc
Q 001271 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-------------LSTSAAKGLLELRHTLEKI-ICHNSTNA 149 (1111)
Q Consensus 84 ~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~-------------Ls~~~P~~L~~L~~LleLl-Ls~N~L~s 149 (1111)
..+++|+.|+|++|++. .+|..++.+++|+.|++++|. +.+..|..+..+.+|..+. +..|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45677777777777776 567777777777777776554 5567788888898888887 67776655
Q ss_pred chhhhc--cccccccCCCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC-CcCCCCCCcEEECCCCCCC
Q 001271 150 LRHVFA--SRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLR 226 (1111)
Q Consensus 150 L~~l~~--~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS~N~Lt 226 (1111)
++.... +.+..+.. ..|+.|+|++|.|+.+|. +..+++|+.|+|++|.|+.+| .+..+++|+.|+|++|.|+
T Consensus 425 L~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 425 LRSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhhhhcccccccCc----cCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC
Confidence 554322 22333221 259999999999999987 999999999999999999986 7999999999999999999
Q ss_pred CccccccccccceEeeccCCccCCc--c-cCCCCCCCCEEEccCCCCCCCchh--hhhcCCCCCcEEEe
Q 001271 227 SIAAFSEVSCHIVKLVLRNNALTTL--R-GIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWL 290 (1111)
Q Consensus 227 ~L~~l~~~L~sL~~L~LS~N~Lt~L--~-~L~~L~sL~~LdLS~N~Is~l~~l--~~L~~L~~L~~L~L 290 (1111)
+++ ....+++|+.|+|++|.|+.+ | .+..+++|+.|+|++|.|+++++. ..+..+|+|+.|++
T Consensus 500 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 988 555689999999999999998 4 689999999999999999987752 23445899999975
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=1.9e-14 Score=152.51 Aligned_cols=150 Identities=19% Similarity=0.180 Sum_probs=122.1
Q ss_pred CcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCC
Q 001271 89 LKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWN 168 (1111)
Q Consensus 89 Lk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~ 168 (1111)
.+.++.+++.+. .+|..+. ++|++|+|++|.|++..|..|.. ++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~---------------------------------l~ 64 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDS---------------------------------LI 64 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTT---------------------------------CT
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhC---------------------------------cc
Confidence 457888888876 5665554 78999999999988765544433 34
Q ss_pred CccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccccccccccceEeeccC
Q 001271 169 RLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRN 245 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~ 245 (1111)
+|++|+|++|+|+.+|. .|..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.|+.++.....+++|+.|+|++
T Consensus 65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS
T ss_pred CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC
Confidence 78888898888888875 5688899999999999998875 47888999999999999998887777789999999999
Q ss_pred CccCCcc--cCCCCCCCCEEEccCCCCCCCc
Q 001271 246 NALTTLR--GIENLKSLEGLDISYNIISTFS 274 (1111)
Q Consensus 246 N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~ 274 (1111)
|.|+.++ .+..+++|+.|+|++|.+....
T Consensus 145 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 145 NQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999884 5888999999999999988643
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=1.6e-14 Score=152.36 Aligned_cols=151 Identities=21% Similarity=0.217 Sum_probs=132.4
Q ss_pred cEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccCCc
Q 001271 171 SFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNA 247 (1111)
Q Consensus 171 ~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~N~ 247 (1111)
+.+++++|+|+.+|..+. ++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+.+ .+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 679999999999998664 78999999999999975 78999999999999999998854 55568999999999999
Q ss_pred cCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCChh
Q 001271 248 LTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (1111)
Q Consensus 248 Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~~ 325 (1111)
|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.|+..+ ...|..++.|+.++|.+|++.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIA---KGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCEECS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEEC---HHHHhCCCCCCEEEeCCCCcCCC
Confidence 99995 37899999999999999999875 67899999999999999998654 34566788999999999999765
Q ss_pred HH
Q 001271 326 EL 327 (1111)
Q Consensus 326 E~ 327 (1111)
..
T Consensus 168 c~ 169 (220)
T 2v9t_B 168 CH 169 (220)
T ss_dssp GG
T ss_pred Cc
Confidence 43
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=9.3e-15 Score=151.39 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=72.4
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCC
Q 001271 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (1111)
Q Consensus 87 ~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~ 166 (1111)
++|++|+|++|.+++..+..|..+++|++|+|++|.++...+..+. .
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------------------------------~ 74 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN---------------------------------K 74 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT---------------------------------T
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC---------------------------------C
Confidence 3555555555555544444455555555555555555442222111 1
Q ss_pred CCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccc-ccccccceEee
Q 001271 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLV 242 (1111)
Q Consensus 167 L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L~ 242 (1111)
+++|++|+|++|+|+.+|. .+..+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.++.. ...+++|+.|+
T Consensus 75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 2355555555555554443 2455555555555555555543 244555555555555555554432 22344555555
Q ss_pred ccCCccCCcccCCCCCCCCEEEccCCCCC
Q 001271 243 LRNNALTTLRGIENLKSLEGLDISYNIIS 271 (1111)
Q Consensus 243 LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is 271 (1111)
|++|.+. ..+++|+.|+++.|.++
T Consensus 155 l~~N~~~-----~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 155 LHDNPWD-----CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp CCSCCBC-----CCTTTTHHHHHHHHHCT
T ss_pred ecCCCee-----cCCCCHHHHHHHHHhCC
Confidence 5555332 23344555555555444
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=1.4e-14 Score=163.54 Aligned_cols=156 Identities=23% Similarity=0.247 Sum_probs=131.7
Q ss_pred CccEEEccCCccccchh-hhc-CCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccc-cccccccceEeec
Q 001271 169 RLSFVSCSCNRLVIMDE-SLQ-LLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVL 243 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssLP~-~L~-~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~L 243 (1111)
.|+.|+|++|+|+.++. .+. .+++|+.|+|++|+|+.++ .|..+++|++|+|++|+|+.+++ .+..+++|+.|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 68899999999998876 455 8999999999999999975 68999999999999999998876 3456899999999
Q ss_pred cCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhh---cCCCCCcEEEecCCCCCCCccchhhHhhhcCC--CCeee
Q 001271 244 RNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFL---ASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH--PAKLK 316 (1111)
Q Consensus 244 S~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L---~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~--L~~L~ 316 (1111)
++|.|+.+ ..|..+++|+.|+|++|.|+.++. ..+ ..+++|+.|+|++|.|...+ ...+..++. ++.++
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~---~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLP---LTDLQKLPAWVKNGLY 195 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCC---HHHHHHSCHHHHTTEE
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccC---HHHhhhccHhhcceEE
Confidence 99999998 368999999999999999999985 444 57999999999999998553 334555554 37799
Q ss_pred cCCCcCChhHHH
Q 001271 317 VDGKEISTRELW 328 (1111)
Q Consensus 317 LdgN~It~~E~~ 328 (1111)
|++|++.+....
T Consensus 196 l~~N~~~C~C~l 207 (361)
T 2xot_A 196 LHNNPLECDCKL 207 (361)
T ss_dssp CCSSCEECCHHH
T ss_pred ecCCCccCCcCc
Confidence 999999877543
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.54 E-value=6.6e-15 Score=174.46 Aligned_cols=157 Identities=15% Similarity=0.071 Sum_probs=99.8
Q ss_pred CCCccEEEcc-----------CCccc--cchhhhcCCCCCcEEEccCCCCCCC--CCcCC-CCCCcEEECC----CCCCC
Q 001271 167 WNRLSFVSCS-----------CNRLV--IMDESLQLLPAVETLDLSRNKFAKV--DNLRK-CVNLKHLDLG----FNNLR 226 (1111)
Q Consensus 167 L~~L~~L~Ls-----------~N~Ls--sLP~~L~~L~nL~~LdLS~N~Ls~L--~~L~~-L~sL~~LdLS----~N~Lt 226 (1111)
+++|+.|+++ .|.++ .++..+..+++|+.|+++.|.++.. ..+.. +++|+.|+++ .|.++
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 4567777777 34555 2333345577777777777777652 23333 6778888885 66676
Q ss_pred Ccc------ccccccccceEeeccCCc--cCCc--ccC-CCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCC
Q 001271 227 SIA------AFSEVSCHIVKLVLRNNA--LTTL--RGI-ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295 (1111)
Q Consensus 227 ~L~------~l~~~L~sL~~L~LS~N~--Lt~L--~~L-~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpL 295 (1111)
+.+ .....+++|+.|+|+.|. ++.. ..+ ..+++|+.|+|++|.+++......+..+++|+.|+|++|++
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 532 233446788888886532 4432 222 34678888888888887633224557788888888888887
Q ss_pred CCCccchhhHhhhcCCCCeeecCCCcCChh
Q 001271 296 CCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (1111)
Q Consensus 296 s~~~~~r~~if~~l~~L~~L~LdgN~It~~ 325 (1111)
+.. ........++.|+.++|.+|.++..
T Consensus 501 ~~~--~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 501 SER--AIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp BHH--HHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cHH--HHHHHHHhcCccCeeECcCCcCCHH
Confidence 422 1233345678888888888887754
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=2.8e-14 Score=150.51 Aligned_cols=152 Identities=19% Similarity=0.260 Sum_probs=132.0
Q ss_pred ccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC---CcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccC
Q 001271 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (1111)
Q Consensus 170 L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~---~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~ 245 (1111)
-+.+++++|.|+.+|..+ .+.++.|+|++|.|+.++ .+..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 368999999999999865 346799999999999873 48899999999999999999886 455689999999999
Q ss_pred CccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCC
Q 001271 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (1111)
Q Consensus 246 N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It 323 (1111)
|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.|+... +..|..++.|+.++|.+|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVA---PGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBC---TTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEEC---HHHhcCCCCCCEEEecCcCCc
Confidence 9999984 48999999999999999999865 67889999999999999997552 345677899999999999997
Q ss_pred hhHH
Q 001271 324 TREL 327 (1111)
Q Consensus 324 ~~E~ 327 (1111)
+...
T Consensus 167 c~c~ 170 (220)
T 2v70_A 167 CNCY 170 (220)
T ss_dssp CSGG
T ss_pred CCCc
Confidence 6654
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=8.7e-14 Score=144.08 Aligned_cols=130 Identities=23% Similarity=0.378 Sum_probs=107.0
Q ss_pred CCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccc-ccccccceEeec
Q 001271 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVL 243 (1111)
Q Consensus 168 ~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L~L 243 (1111)
++|++|++++|+|+.++. .+..+++|++|+|++|+|+.++ .+..+++|++|+|++|.|+.+++. ...+++|+.|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 478889999998887766 4678889999999999888875 367888999999999988887764 345788999999
Q ss_pred cCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001271 244 RNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (1111)
Q Consensus 244 S~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~ 298 (1111)
++|.|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCCC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCCeecC
Confidence 999888874 37888899999999999988775 5578888999999999988765
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=2.1e-16 Score=163.27 Aligned_cols=162 Identities=31% Similarity=0.405 Sum_probs=139.3
Q ss_pred CccEEEccCC--ccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccccceEeeccCC
Q 001271 169 RLSFVSCSCN--RLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 246 (1111)
Q Consensus 169 ~L~~L~Ls~N--~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N 246 (1111)
.|+.+.+.++ .++.+|..+..+++|++|+|++|.|+.++.+..+++|+.|+|++|.|+.++.....+++|+.|+|++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 5666666654 67788889999999999999999999999889999999999999999999887767799999999999
Q ss_pred ccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC-------ccchhhHhhhcCCCCeeecCC
Q 001271 247 ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS-------RWYRAQVFSYFAHPAKLKVDG 319 (1111)
Q Consensus 247 ~Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~-------~~~r~~if~~l~~L~~L~Ldg 319 (1111)
.|+.++.+..+++|+.|+|++|.|+.++.+..+..+++|+.|++++|++.+. ..++...+..++.|+. ||+
T Consensus 104 ~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~--Ld~ 181 (198)
T 1ds9_A 104 QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK--LDG 181 (198)
T ss_dssp ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE--ECC
T ss_pred cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE--ECC
Confidence 9999988888999999999999999988666889999999999999999765 3455556777777765 569
Q ss_pred CcCChhHHHHHHH
Q 001271 320 KEISTRELWERQL 332 (1111)
Q Consensus 320 N~It~~E~~~~~~ 332 (1111)
++++..++..++.
T Consensus 182 ~~i~~~e~~~a~~ 194 (198)
T 1ds9_A 182 MPVDVDEREQANV 194 (198)
T ss_dssp GGGTTTTTTHHHH
T ss_pred cccCHHHHHHHHh
Confidence 9999988876643
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=3.4e-14 Score=142.31 Aligned_cols=132 Identities=19% Similarity=0.168 Sum_probs=115.1
Q ss_pred CCCccEEEccCCccc--cchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCC-ccccccccccceEeec
Q 001271 167 WNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVL 243 (1111)
Q Consensus 167 L~~L~~L~Ls~N~Ls--sLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~-L~~l~~~L~sL~~L~L 243 (1111)
.++|+.|++++|.++ .+|..+..+++|+.|+|++|.|+.++.+..+++|++|+|++|.|+. ++.....+++|+.|+|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 368999999999999 8988889999999999999999999889999999999999999998 5555555899999999
Q ss_pred cCCccCCc---ccCCCCCCCCEEEccCCCCCCCchh--hhhcCCCCCcEEEecCCCCCCC
Q 001271 244 RNNALTTL---RGIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPLCCS 298 (1111)
Q Consensus 244 S~N~Lt~L---~~L~~L~sL~~LdLS~N~Is~l~~l--~~L~~L~~L~~L~LsgNpLs~~ 298 (1111)
++|.|+.+ ..+..+++|+.|+|++|.|+.++.. ..+..+++|+.|++++|.+...
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999986 3678899999999999999988741 3678899999999999988644
No 118
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.50 E-value=9.2e-15 Score=173.25 Aligned_cols=283 Identities=12% Similarity=0.094 Sum_probs=181.8
Q ss_pred cCCcEEEecCCCccchHHhhhhcccchhhccCCCcc-------------ccccccccCCCCCcchhHHHHhcCCCCCcEE
Q 001271 26 EGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLD-------------YLRAYVSDLGDHRALEQLRRILKLLTSLKVV 92 (1111)
Q Consensus 26 ~~lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~-------------~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~L 92 (1111)
..++.|+|+.+.+..++..+..+.+|+.+....... ...+..+++.++ ....+|..+..+++|++|
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEE
Confidence 456677777776666666666666665544321000 001112233332 234566777778888888
Q ss_pred EccCCCCCCCCC-ccCCCCCCCCEEEeeCCCCCc-cchhhHhhhhhhhhhhhcc-----------CCCcc--chhhhccc
Q 001271 93 SALPPPARDPTP-LSLLPFCRLKVLELRGCDLST-SAAKGLLELRHTLEKIICH-----------NSTNA--LRHVFASR 157 (1111)
Q Consensus 93 dLs~N~Is~~iP-~sLs~L~nL~~LdLS~N~Ls~-~~P~~L~~L~~LleLlLs~-----------N~L~s--L~~l~~~~ 157 (1111)
+|++|.+++... ..+..+++|++|+|+ +.+.. .++..+..+++|.++.+.+ |.+.. +..+.
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~--- 374 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA--- 374 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH---
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH---
Confidence 888888654333 335678888888888 44443 2333345567777777773 33321 11111
Q ss_pred cccccCCCCCCCccEEEccCCccc-cchhhhcC-CCCCcEEEcc----CCCCCCCC-------CcCCCCCCcEEECCCCC
Q 001271 158 IVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQL-LPAVETLDLS----RNKFAKVD-------NLRKCVNLKHLDLGFNN 224 (1111)
Q Consensus 158 I~~L~~l~~L~~L~~L~Ls~N~Ls-sLP~~L~~-L~nL~~LdLS----~N~Ls~L~-------~L~~L~sL~~LdLS~N~ 224 (1111)
..+++|++|++..|.++ ..+..+.. +++|+.|+|+ .|.++..+ .+..+++|+.|+|++|.
T Consensus 375 -------~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 375 -------QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp -------HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred -------hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 13579999999999988 33344544 8999999996 77888642 25568999999998643
Q ss_pred --CCCc--cccccccccceEeeccCCccCCc--c-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCC
Q 001271 225 --LRSI--AAFSEVSCHIVKLVLRNNALTTL--R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCC 297 (1111)
Q Consensus 225 --Lt~L--~~l~~~L~sL~~L~LS~N~Lt~L--~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~ 297 (1111)
++.. ......+++|+.|+|++|.++.. + .+..+++|+.|+|++|.|+.......+..+++|+.|+|++|+++.
T Consensus 448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 5532 22334478999999999999863 3 457889999999999998653222345678999999999999875
Q ss_pred CccchhhHhhhcCCCCeeecCCCcC
Q 001271 298 SRWYRAQVFSYFAHPAKLKVDGKEI 322 (1111)
Q Consensus 298 ~~~~r~~if~~l~~L~~L~LdgN~I 322 (1111)
.. ...+...++.++...++.++.
T Consensus 528 ~~--~~~l~~~~p~l~~~~~~~~~~ 550 (592)
T 3ogk_B 528 TG--QDLMQMARPYWNIELIPSRRV 550 (592)
T ss_dssp TC--TTGGGGCCTTEEEEEECCC--
T ss_pred HH--HHHHHHhCCCcEEEEecCccc
Confidence 42 122334567777777776544
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=1.3e-14 Score=179.11 Aligned_cols=219 Identities=16% Similarity=0.082 Sum_probs=106.2
Q ss_pred CcEEEecCCCccchHHhhhhcccchhhccCCCccccccccccCCCCCcchhHHHHhcCCCCCcEEEccCCCCCCCCCccC
Q 001271 28 SIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSL 107 (1111)
Q Consensus 28 lk~L~Ls~~~L~~Lp~~L~~L~~Le~L~~~~~l~~Lrl~vLdLs~n~~L~~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sL 107 (1111)
...|+|..+++...+..+....+|..... ..+++..++ +...+..+..+++|+.|+|++|.+. .+|..+
T Consensus 175 ~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i---------~~~~~~~n~-~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~ 243 (727)
T 4b8c_D 175 TPKIELFANGKDEANQALLQHKKLSQYSI---------DEDDDIENR-MVMPKDSKYDDQLWHALDLSNLQIF-NISANI 243 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGG
T ss_pred cceEEeeCCCCCcchhhHhhcCccCcccc---------cCccccccc-eecChhhhccCCCCcEEECCCCCCC-CCChhh
Confidence 45566666666665544433332332211 112233332 2344566777777777777777776 556666
Q ss_pred CCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccccchhhh
Q 001271 108 LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESL 187 (1111)
Q Consensus 108 s~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssLP~~L 187 (1111)
..+++|++|+|++|.|+ .+|..|..+ ++|++|+|++|.|+.+|..|
T Consensus 244 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l---------------------------------~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNSLT-ELPAEIKNL---------------------------------SNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp GGCCSCSCCBCTTSCCS-CCCGGGGGG---------------------------------TTCCEEECTTSCCSSCCSSG
T ss_pred cCCCCCCEEEeeCCcCc-ccChhhhCC---------------------------------CCCCEEeCcCCcCCccChhh
Confidence 67777777777777776 355554433 48999999999999999999
Q ss_pred cCCCCCcEEEccCCCCCCCC-CcCCCCCCcEEECCCCCCCCcccccc-cc-ccceEeeccCCccCCcccCCCCCCCCEEE
Q 001271 188 QLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSE-VS-CHIVKLVLRNNALTTLRGIENLKSLEGLD 264 (1111)
Q Consensus 188 ~~L~nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS~N~Lt~L~~l~~-~L-~sL~~L~LS~N~Lt~L~~L~~L~sL~~Ld 264 (1111)
..+++|++|+|++|.|+.+| .|..+++|+.|+|++|.|++.++... .+ ..+..|+|++|.++.. ....|..|+
T Consensus 290 ~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~----~p~~l~~l~ 365 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP----LPHERRFIE 365 (727)
T ss_dssp GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCC-----
T ss_pred cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc----CccccceeE
Confidence 99999999999999999986 69999999999999999997655322 21 2234578999988764 134677888
Q ss_pred ccCC--------CCCCCchhhhhcCCCCCcEEEecCCCCC
Q 001271 265 ISYN--------IISTFSELEFLASLPYLLNLWLEGNPLC 296 (1111)
Q Consensus 265 LS~N--------~Is~l~~l~~L~~L~~L~~L~LsgNpLs 296 (1111)
++.| .|..... ..+..+..+....++.|.+.
T Consensus 366 l~~n~~~~~~~~~l~~~~~-~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 366 INTDGEPQREYDSLQQSTE-HLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------------------CCC
T ss_pred eecccccccccCCcccccc-chhhcccccceeeeeccccc
Confidence 8877 1222111 12334455556666777664
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=143.19 Aligned_cols=128 Identities=27% Similarity=0.371 Sum_probs=112.8
Q ss_pred cEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC-CcCCCCCCcEEECCCCCCCCcccc-ccccccceEeeccCCcc
Q 001271 171 SFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNNAL 248 (1111)
Q Consensus 171 ~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L~LS~N~L 248 (1111)
+.+++++|+|+.+|..+ .++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.+++. +..+++|+.|+|++|.|
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 67899999999998765 368999999999999885 788999999999999999988763 45689999999999999
Q ss_pred CCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 001271 249 TTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (1111)
Q Consensus 249 t~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~ 301 (1111)
+.++ .|..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.+..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecCCcC
Confidence 9984 58999999999999999999885 5788999999999999999988754
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=1.2e-13 Score=142.55 Aligned_cols=129 Identities=24% Similarity=0.297 Sum_probs=113.2
Q ss_pred ccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC---CcCCCCCCcEEECCCCCCCCccc-cccccccceEeeccC
Q 001271 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (1111)
Q Consensus 170 L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~---~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~ 245 (1111)
.+.|++++|+|+.+|..+. ++|+.|+|++|.|+.++ .+..+++|++|+|++|.|+++.+ .+..+++|+.|+|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3789999999999998654 38999999999999875 28899999999999999999854 555689999999999
Q ss_pred CccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 001271 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (1111)
Q Consensus 246 N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~ 301 (1111)
|+|+.++ .+..+++|+.|+|++|+|+.+.+ ..+..+++|+.|+|++|++.|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9999984 48899999999999999998765 6788999999999999999988643
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=6.2e-14 Score=142.07 Aligned_cols=132 Identities=23% Similarity=0.302 Sum_probs=79.6
Q ss_pred CCCCcEEEccCCCCCCCCCcCCCC-CCcEEECCCCCCCCccccccccccceEeeccCCccCCcc-c-CCCCCCCCEEEcc
Q 001271 190 LPAVETLDLSRNKFAKVDNLRKCV-NLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-G-IENLKSLEGLDIS 266 (1111)
Q Consensus 190 L~nL~~LdLS~N~Ls~L~~L~~L~-sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~-~-L~~L~sL~~LdLS 266 (1111)
+++|+.|+|++|.|+.++.+..+. +|+.|+|++|.|+.+ .....+++|++|+|++|.|+.++ . +..+++|+.|+|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 444444444444444444333333 455555555555444 22223455555555555555543 2 3566777777888
Q ss_pred CCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcC
Q 001271 267 YNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (1111)
Q Consensus 267 ~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~I 322 (1111)
+|.|+.++.+..+..+++|+.|++++|+++..+.++..++..++.|+.+++.+|.+
T Consensus 97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 88777777545677788888888888888766666666677777777777766654
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1e-13 Score=136.13 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=98.5
Q ss_pred CCccEEEccCCccc--cchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCC-ccccccccccceEeecc
Q 001271 168 NRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLR 244 (1111)
Q Consensus 168 ~~L~~L~Ls~N~Ls--sLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~-L~~l~~~L~sL~~L~LS 244 (1111)
++|+.|++++|.++ .+|..+..+++|+.|+|++|.|+.++.+..+++|++|+|++|.|+. ++.....+++|++|+|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 57999999999998 8888888999999999999999988888888999999999999988 55555456778888888
Q ss_pred CCccCCc---ccCCCCCCCCEEEccCCCCCCCchh--hhhcCCCCCcEEEec
Q 001271 245 NNALTTL---RGIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLE 291 (1111)
Q Consensus 245 ~N~Lt~L---~~L~~L~sL~~LdLS~N~Is~l~~l--~~L~~L~~L~~L~Ls 291 (1111)
+|.|+.+ ..+..+++|+.|++++|.++.+++. ..+..+++|+.|+++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8887775 4567777777777777777776642 356667777777665
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=1.2e-13 Score=139.91 Aligned_cols=131 Identities=21% Similarity=0.197 Sum_probs=114.4
Q ss_pred CCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccc-cccccceEeecc
Q 001271 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFS-EVSCHIVKLVLR 244 (1111)
Q Consensus 166 ~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~-~~L~sL~~L~LS 244 (1111)
.+.+|+.|++++|+|+.+|......++|+.|+|++|.|+.++.+..+++|++|+|++|.|+.+++.. ..+++|+.|+|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 4678999999999999986544444599999999999999989999999999999999999987644 568999999999
Q ss_pred CCccCCcc---cCCCCCCCCEEEccCCCCCCCchh--hhhcCCCCCcEEEecCCCCC
Q 001271 245 NNALTTLR---GIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPLC 296 (1111)
Q Consensus 245 ~N~Lt~L~---~L~~L~sL~~LdLS~N~Is~l~~l--~~L~~L~~L~~L~LsgNpLs 296 (1111)
+|.|+.++ .+..+++|+.|+|++|.+..++.. ..+..+++|+.|++++|.+.
T Consensus 97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999885 588899999999999999988741 14788999999999999875
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=9.9e-13 Score=132.93 Aligned_cols=128 Identities=23% Similarity=0.376 Sum_probs=111.5
Q ss_pred CccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccc-ccccccceEeeccC
Q 001271 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRN 245 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L~LS~ 245 (1111)
..+.+++++|+++.+|..+ .++|+.|+|++|.++.++ .+..+++|++|+|++|.|+.+++. ...+++|+.|+|++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4578999999999998654 478999999999999875 478899999999999999988864 35689999999999
Q ss_pred CccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001271 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (1111)
Q Consensus 246 N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~ 299 (1111)
|.|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeeccC
Confidence 9999985 47889999999999999999885 56788999999999999998775
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.42 E-value=4.9e-14 Score=166.80 Aligned_cols=205 Identities=15% Similarity=0.054 Sum_probs=122.6
Q ss_pred CCCCCEEEeeCCCCCccchh-hHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEcc---------CCc
Q 001271 110 FCRLKVLELRGCDLSTSAAK-GLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCS---------CNR 179 (1111)
Q Consensus 110 L~nL~~LdLS~N~Ls~~~P~-~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls---------~N~ 179 (1111)
+++|++|+|++|.++...+. .+..+++|..+.+.+| +.. . .+..+. ..+++|+.|++. .+.
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~--~----~l~~l~--~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED--A----GLEVLA--STCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH--H----HHHHHH--HHCTTCCEEEEECSCTTCSSCSSC
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH--H----HHHHHH--HhCCCCCEEEEecCcccccccCCC
Confidence 45666666666665532222 2334555555555544 110 0 000000 124577777773 344
Q ss_pred ccc--chhhhcCCCCCcEEEccCCCCCCC--CCcC-CCCCCcEEECC--C----CCCCCcc------ccccccccceEee
Q 001271 180 LVI--MDESLQLLPAVETLDLSRNKFAKV--DNLR-KCVNLKHLDLG--F----NNLRSIA------AFSEVSCHIVKLV 242 (1111)
Q Consensus 180 Lss--LP~~L~~L~nL~~LdLS~N~Ls~L--~~L~-~L~sL~~LdLS--~----N~Lt~L~------~l~~~L~sL~~L~ 242 (1111)
++. +......+++|+.|.+..|.++.. ..+. .+++|+.|+|+ + |.++..+ .....+++|+.|+
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 542 212223477888888877777652 2333 47888899888 4 5666432 2234468899999
Q ss_pred ccCCccCCc--ccCCC-CCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCC
Q 001271 243 LRNNALTTL--RGIEN-LKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (1111)
Q Consensus 243 LS~N~Lt~L--~~L~~-L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~Ldg 319 (1111)
|++ .++.. +.+.. +++|+.|+|++|.+++.........+++|+.|+|++|+++.. ........++.|+.++|.+
T Consensus 439 L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~--~~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 439 LSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK--ALLANASKLETMRSLWMSS 515 (594)
T ss_dssp CCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH--HHHHTGGGGGGSSEEEEES
T ss_pred ecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH--HHHHHHHhCCCCCEEeeeC
Confidence 976 55443 33333 788999999999987643322236789999999999998422 1222345578899999999
Q ss_pred CcCChhH
Q 001271 320 KEISTRE 326 (1111)
Q Consensus 320 N~It~~E 326 (1111)
|+++...
T Consensus 516 ~~~~~~~ 522 (594)
T 2p1m_B 516 CSVSFGA 522 (594)
T ss_dssp SCCBHHH
T ss_pred CCCCHHH
Confidence 9995443
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=3.4e-13 Score=135.03 Aligned_cols=136 Identities=28% Similarity=0.214 Sum_probs=118.6
Q ss_pred cCCCCCcEEEccCCCCC--CCC-CcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCC-ccc-CCCCCCCCE
Q 001271 188 QLLPAVETLDLSRNKFA--KVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LRG-IENLKSLEG 262 (1111)
Q Consensus 188 ~~L~nL~~LdLS~N~Ls--~L~-~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~-L~~-L~~L~sL~~ 262 (1111)
..+++|+.|+|++|.++ .++ .+..+++|+.|+|++|.|+.+ .....+++|+.|+|++|.++. ++. +..+++|+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 34588999999999998 676 468899999999999999988 555568999999999999999 553 455999999
Q ss_pred EEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCcCCh
Q 001271 263 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 263 LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~It~ 324 (1111)
|+|++|.|+.++.+..+..+++|+.|+|++|+++..+.++...+..++.|+.+++.+|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999999998866788999999999999999998877776788899999999999988753
No 128
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=2e-13 Score=161.61 Aligned_cols=254 Identities=15% Similarity=0.090 Sum_probs=135.8
Q ss_pred cccCCCCCcchh--HHHHhcCCCCCcEEEccCCCCCCCCCccCC----CCCCCCEEEeeCCC--CCcc-chhhHhhhhhh
Q 001271 67 VSDLGDHRALEQ--LRRILKLLTSLKVVSALPPPARDPTPLSLL----PFCRLKVLELRGCD--LSTS-AAKGLLELRHT 137 (1111)
Q Consensus 67 vLdLs~n~~L~~--Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs----~L~nL~~LdLS~N~--Ls~~-~P~~L~~L~~L 137 (1111)
.+++.+|..++. ++..+..+++|++|+|++|.+++..+..+. .+++|+.|+|++|. ++.. ++..+..+++|
T Consensus 134 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L 213 (594)
T 2p1m_B 134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213 (594)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTC
T ss_pred EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCC
Confidence 355666654444 677777899999999999987765544443 56789999998886 3321 12222345677
Q ss_pred hhhhhccC-CCccchhhhc-----------------------------ccccccc------C-----C----CCCCCccE
Q 001271 138 LEKIICHN-STNALRHVFA-----------------------------SRIVEIK------D-----S----PQWNRLSF 172 (1111)
Q Consensus 138 leLlLs~N-~L~sL~~l~~-----------------------------~~I~~L~------~-----l----~~L~~L~~ 172 (1111)
..+.+.+| .+..++..+. ...+.+. . + ..+++|+.
T Consensus 214 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~ 293 (594)
T 2p1m_B 214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293 (594)
T ss_dssp CEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCE
T ss_pred cEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCE
Confidence 77777665 1111111100 0000000 0 0 13468888
Q ss_pred EEccCCcccc--chhhhcCCCCCcEEEccCCCCCC--CCC-cCCCCCCcEEECC---------CCCCCCc--cccccccc
Q 001271 173 VSCSCNRLVI--MDESLQLLPAVETLDLSRNKFAK--VDN-LRKCVNLKHLDLG---------FNNLRSI--AAFSEVSC 236 (1111)
Q Consensus 173 L~Ls~N~Lss--LP~~L~~L~nL~~LdLS~N~Ls~--L~~-L~~L~sL~~LdLS---------~N~Lt~L--~~l~~~L~ 236 (1111)
|+|++|.++. ++..+..+++|+.|+|++| +.. ++. ...+++|+.|+|. .+.++.. ......++
T Consensus 294 L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~ 372 (594)
T 2p1m_B 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372 (594)
T ss_dssp EECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT
T ss_pred EEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhch
Confidence 8888888762 3334667788888888877 332 121 1236677777772 2344321 11222356
Q ss_pred cceEeeccCCccCCc--ccCC-CCCCCCEEEcc--C----CCCCCCchh----hhhcCCCCCcEEEecCCCCCCCccchh
Q 001271 237 HIVKLVLRNNALTTL--RGIE-NLKSLEGLDIS--Y----NIISTFSEL----EFLASLPYLLNLWLEGNPLCCSRWYRA 303 (1111)
Q Consensus 237 sL~~L~LS~N~Lt~L--~~L~-~L~sL~~LdLS--~----N~Is~l~~l----~~L~~L~~L~~L~LsgNpLs~~~~~r~ 303 (1111)
+|+.|.+..|.++.. ..+. .+++|+.|+|+ + |.++..+.- ..+..+++|+.|+|++ .++.. ...
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~--~~~ 449 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK--VFE 449 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH--HHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH--HHH
Confidence 677776666666543 2222 35667777776 3 455533210 1134455666666654 33211 111
Q ss_pred hHhhhcCCCCeeecCCCcCCh
Q 001271 304 QVFSYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 304 ~if~~l~~L~~L~LdgN~It~ 324 (1111)
.+...++.|+.++|.+|.++.
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSH
T ss_pred HHHHhchhccEeeccCCCCcH
Confidence 112224556666666665543
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=1.1e-12 Score=128.60 Aligned_cols=129 Identities=26% Similarity=0.190 Sum_probs=111.2
Q ss_pred CCCCCcEEEccCCCCC--CCC-CcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCccCC-cc-cCCCCCCCCEE
Q 001271 189 LLPAVETLDLSRNKFA--KVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGL 263 (1111)
Q Consensus 189 ~L~nL~~LdLS~N~Ls--~L~-~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~-L~-~L~~L~sL~~L 263 (1111)
..++|+.|++++|.++ .++ .+..+++|+.|++++|.|+.+ .....+++|++|+|++|.|+. ++ .+..+++|+.|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999999998 565 568899999999999999998 545567999999999999998 55 45568999999
Q ss_pred EccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecC
Q 001271 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVD 318 (1111)
Q Consensus 264 dLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~Ld 318 (1111)
+|++|.|++++....+..+++|+.|++++|+++..+.++...+..++.|+.+++.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999997655678999999999999999987776666778889999888775
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=6.7e-15 Score=151.98 Aligned_cols=156 Identities=21% Similarity=0.228 Sum_probs=80.1
Q ss_pred hcCCCCCcEEEccCCCCCCCCCc------cCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhcc
Q 001271 83 LKLLTSLKVVSALPPPARDPTPL------SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFAS 156 (1111)
Q Consensus 83 L~~L~nLk~LdLs~N~Is~~iP~------sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~ 156 (1111)
+.....++.+++..+.+.+..|. .|..+++|++|+|++|.+++ +| .+..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l---------------------- 69 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGM---------------------- 69 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHH----------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccC----------------------
Confidence 45555666666666666555443 45555555555555555544 22 22222
Q ss_pred ccccccCCCCCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCCCcCCCCCCcEEECCCCCCCCccccccccc
Q 001271 157 RIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSC 236 (1111)
Q Consensus 157 ~I~~L~~l~~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~ 236 (1111)
++|++|++++|.|+.+|..+..+++|+.|+|++|.|+.++.+..+ +
T Consensus 70 -----------~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l-----------------------~ 115 (198)
T 1ds9_A 70 -----------ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKL-----------------------V 115 (198)
T ss_dssp -----------TTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHH-----------------------H
T ss_pred -----------CCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccC-----------------------C
Confidence 144455555555554444444444444444444444444333333 4
Q ss_pred cceEeeccCCccCCcc---cCCCCCCCCEEEccCCCCCCCch---------hhhhcCCCCCcEEEecCCCCCCC
Q 001271 237 HIVKLVLRNNALTTLR---GIENLKSLEGLDISYNIISTFSE---------LEFLASLPYLLNLWLEGNPLCCS 298 (1111)
Q Consensus 237 sL~~L~LS~N~Lt~L~---~L~~L~sL~~LdLS~N~Is~l~~---------l~~L~~L~~L~~L~LsgNpLs~~ 298 (1111)
+|+.|+|++|.|+.++ .+..+++|+.|++++|.+....+ ...+..+++|+.|+ +|+++..
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 4444444444444432 35556666666666666654321 12366778888775 7777644
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=1.6e-12 Score=160.52 Aligned_cols=131 Identities=20% Similarity=0.170 Sum_probs=95.9
Q ss_pred CCCCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC-CcCCCCCCcEEECCCCCCCCccccccccccceEeecc
Q 001271 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLR 244 (1111)
Q Consensus 166 ~L~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~-~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS 244 (1111)
.+..|+.|+|++|.|..+|..+..+++|+.|+|++|.|+.++ .+..+++|++|+|++|.|+.++..+..+++|++|+|+
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECC
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECC
Confidence 456788888888888888777778888888888888888775 5777888888888888888777666667788888888
Q ss_pred CCccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCC-CCcEEEecCCCCCC
Q 001271 245 NNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLP-YLLNLWLEGNPLCC 297 (1111)
Q Consensus 245 ~N~Lt~L~-~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~-~L~~L~LsgNpLs~ 297 (1111)
+|.|+.+| .|..+++|+.|+|++|.|+..++ ..+..+. .+..|+|++|.++.
T Consensus 302 ~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 302 DNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL-KILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp SSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH-HHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCccChhhhcCCCccEEeCCCCccCCCCh-HHHhhcchhhhHHhhccCcccC
Confidence 88887774 57778888888888888876543 3332221 12236677777754
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=1e-11 Score=128.65 Aligned_cols=112 Identities=20% Similarity=0.297 Sum_probs=99.3
Q ss_pred CCccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccc-cccccccceEeecc
Q 001271 168 NRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLR 244 (1111)
Q Consensus 168 ~~L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS 244 (1111)
++|+.|+|++|.|+.+|..|..+++|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.+++ .+..+++|+.|+|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3789999999999999999999999999999999999985 58999999999999999999886 35568999999999
Q ss_pred CCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhh
Q 001271 245 NNALTTLR--GIENLKSLEGLDISYNIISTFSELEFL 279 (1111)
Q Consensus 245 ~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L 279 (1111)
+|.|+.++ .+..+++|+.|+|++|.+...-.+.++
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l 147 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWL 147 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHH
Confidence 99999985 488999999999999999865444443
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=1.4e-11 Score=127.02 Aligned_cols=128 Identities=19% Similarity=0.223 Sum_probs=65.7
Q ss_pred cEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhh-HhhhhhhhhhhhccCCCccchhhhccccccccCCCCCC
Q 001271 90 KVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKG-LLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWN 168 (1111)
Q Consensus 90 k~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~-L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~ 168 (1111)
+.|++++|+++ .+|..+. .+|++|+|++|.|++..+.. +.. ++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~---------------------------------l~ 54 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR---------------------------------LP 54 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGG---------------------------------CT
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCcccccc---------------------------------CC
Confidence 45666666664 4454443 26666666666665433321 211 23
Q ss_pred CccEEEccCCccccc-hhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccccccccccceEeeccC
Q 001271 169 RLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRN 245 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssL-P~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~ 245 (1111)
+|++|+|++|.|+.+ |..|..+++|+.|+|++|+|+.++ .+..+++|++|+|++|+|+++.+
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------- 119 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP--------------- 119 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT---------------
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH---------------
Confidence 455555555555544 334555555555555555555542 24444555555555554443322
Q ss_pred CccCCcccCCCCCCCCEEEccCCCCCCCc
Q 001271 246 NALTTLRGIENLKSLEGLDISYNIISTFS 274 (1111)
Q Consensus 246 N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~ 274 (1111)
..+..+++|+.|+|++|.+....
T Consensus 120 ------~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 120 ------GSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp ------TSSTTCTTCCEEECTTCCBCCSG
T ss_pred ------HHhhcCCCCCEEEeCCCCccCcC
Confidence 13455566666666666666433
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=4.1e-12 Score=141.16 Aligned_cols=97 Identities=16% Similarity=0.227 Sum_probs=50.5
Q ss_pred CCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccc-ccccccce-EeeccCCccCCc--ccCCCCCCCCEE
Q 001271 190 LPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIV-KLVLRNNALTTL--RGIENLKSLEGL 263 (1111)
Q Consensus 190 L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~-~L~LS~N~Lt~L--~~L~~L~sL~~L 263 (1111)
+++|+.|+|++|.++.++ .|.++++|+.|+|.+| ++.++.. +..+++|+ .|.|.+ .++.+ ..|.+|++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 455555555555555543 4555555555555555 4444432 22344555 555555 44444 245555555555
Q ss_pred EccCCCCCCCchhhhhcCCCCCcEEE
Q 001271 264 DISYNIISTFSELEFLASLPYLLNLW 289 (1111)
Q Consensus 264 dLS~N~Is~l~~l~~L~~L~~L~~L~ 289 (1111)
+|+.|.|+.++. ..|.++++|+.|+
T Consensus 303 ~l~~n~i~~I~~-~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGD-ELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECT-TTTCTTCCCCEEE
T ss_pred EeCCCccCccch-hhhcCCcchhhhc
Confidence 555555555553 4455555555544
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=5.6e-11 Score=120.05 Aligned_cols=87 Identities=23% Similarity=0.234 Sum_probs=41.2
Q ss_pred cCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcccc-ccccccceEeeccCCccCCcc--cCCCCCCCCE
Q 001271 188 QLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNNALTTLR--GIENLKSLEG 262 (1111)
Q Consensus 188 ~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L~LS~N~Lt~L~--~L~~L~sL~~ 262 (1111)
..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|+.+++. ...+++|+.|+|++|.|+.++ .+..+++|+.
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence 33444444444444444432 133444444444444444444332 223444555555555555442 2455666677
Q ss_pred EEccCCCCCCCc
Q 001271 263 LDISYNIISTFS 274 (1111)
Q Consensus 263 LdLS~N~Is~l~ 274 (1111)
|+|++|.+....
T Consensus 129 L~l~~N~~~~~~ 140 (177)
T 2o6r_A 129 IWLHTNPWDCSC 140 (177)
T ss_dssp EECCSSCBCCCH
T ss_pred EEecCCCeeccC
Confidence 777777666533
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=6.4e-11 Score=120.01 Aligned_cols=105 Identities=25% Similarity=0.394 Sum_probs=69.2
Q ss_pred ccEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCc
Q 001271 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNA 247 (1111)
Q Consensus 170 L~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~ 247 (1111)
.+.|++++|.|+.+|..+ .++|+.|+|++|.|+.++ .|..+ ++|++|+|++|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l-----------------------~~L~~L~Ls~N~ 65 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRL-----------------------TQLTRLDLDNNQ 65 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTC-----------------------TTCSEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCc-----------------------ccCCEEECCCCC
Confidence 345555555555555433 244555555555555442 24444 455555555555
Q ss_pred cCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001271 248 LTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (1111)
Q Consensus 248 Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~ 300 (1111)
|+.++ .+..+++|+.|+|++|+|+.+++ ..+..+++|+.|+|++|++.|.+.
T Consensus 66 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 66 LTVLPAGVFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred cCccChhhccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence 55553 35678889999999999998875 568889999999999999998864
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=8.2e-11 Score=130.72 Aligned_cols=211 Identities=13% Similarity=0.077 Sum_probs=126.1
Q ss_pred CCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhh--------hhhhhhhhhccCCCccchhhhccc
Q 001271 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLE--------LRHTLEKIICHNSTNALRHVFASR 157 (1111)
Q Consensus 86 L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~--------L~~LleLlLs~N~L~sL~~l~~~~ 157 (1111)
+++|+.|+|++|+|.. ....-+.++.+..+.+..|.|. +..|.+ +.+|..+.+.+ ++..+....
T Consensus 48 l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a--- 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA--- 119 (329)
T ss_dssp CTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT---
T ss_pred hccCeEEecCcceeEE-ecCccccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHH---
Confidence 8889999999998871 1111112223455555555332 344445 56666666555 444443322
Q ss_pred cccccCCCCCCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCC----CCCC--Cc---------------------
Q 001271 158 IVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKF----AKVD--NL--------------------- 209 (1111)
Q Consensus 158 I~~L~~l~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~L----s~L~--~L--------------------- 209 (1111)
+..+++|+.|+++.|.+..++. .|..+.++..|.+..+.. ..+. .+
T Consensus 120 ------F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~ 193 (329)
T 3sb4_A 120 ------FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDE 193 (329)
T ss_dssp ------TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHH
T ss_pred ------hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHH
Confidence 2345677777777777766654 555555555555444210 1110 00
Q ss_pred -----------------------------CCCCCCcEEECCCCCCCCcccc-ccccccceEeeccCCccCCcc--cCCCC
Q 001271 210 -----------------------------RKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNNALTTLR--GIENL 257 (1111)
Q Consensus 210 -----------------------------~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L~LS~N~Lt~L~--~L~~L 257 (1111)
..+++|+.|+|++|.++.++.. +..+.+|+.|+|.+| ++.++ .|.++
T Consensus 194 ~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~ 272 (329)
T 3sb4_A 194 IMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNC 272 (329)
T ss_dssp HHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred HhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCC
Confidence 0256777888887777777763 334677888888777 66663 57777
Q ss_pred CCCC-EEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeee
Q 001271 258 KSLE-GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLK 316 (1111)
Q Consensus 258 ~sL~-~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~ 316 (1111)
++|+ .|+|.+ .++.++. ..|..+++|+.|++.+|.+... ....|..++.|+.++
T Consensus 273 ~~L~~~l~l~~-~l~~I~~-~aF~~c~~L~~l~l~~n~i~~I---~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 273 GRLAGTLELPA-SVTAIEF-GAFMGCDNLRYVLATGDKITTL---GDELFGNGVPSKLIY 327 (329)
T ss_dssp TTCCEEEEECT-TCCEECT-TTTTTCTTEEEEEECSSCCCEE---CTTTTCTTCCCCEEE
T ss_pred hhccEEEEEcc-cceEEch-hhhhCCccCCEEEeCCCccCcc---chhhhcCCcchhhhc
Confidence 7787 777776 6666665 6677777888888777777533 344566666666654
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=1.7e-10 Score=117.54 Aligned_cols=104 Identities=22% Similarity=0.383 Sum_probs=68.4
Q ss_pred cEEEccCCccccchhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCcc
Q 001271 171 SFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNAL 248 (1111)
Q Consensus 171 ~~L~Ls~N~LssLP~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~L 248 (1111)
+.+++++|+|+.+|..+. ++|+.|+|++|.|+.++ .|.. +++|+.|+|++|+|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~-----------------------l~~L~~L~Ls~N~l 69 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDH-----------------------LVNLQQLYFNSNKL 69 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTT-----------------------CTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcC-----------------------CcCCCEEECCCCCC
Confidence 455555555555554432 44555555555555442 2444 45555555555555
Q ss_pred CCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001271 249 TTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (1111)
Q Consensus 249 t~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~ 300 (1111)
+.++ .+..+++|+.|+|++|+|+.+++ ..+..+++|+.|+|++|++.|.+.
T Consensus 70 ~~i~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 70 TAIPTGVFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccChhHhCCcchhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence 5553 25678889999999999998875 568889999999999999998764
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=4.2e-10 Score=114.66 Aligned_cols=104 Identities=19% Similarity=0.133 Sum_probs=76.9
Q ss_pred hhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCccccc-hhhhcCCCCCcEEEccCCCCCCCC--CcCCCCC
Q 001271 138 LEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVN 214 (1111)
Q Consensus 138 leLlLs~N~L~sL~~l~~~~I~~L~~l~~L~~L~~L~Ls~N~LssL-P~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~s 214 (1111)
..+++.+|.+..++..+ .++|+.|+|++|+|+.+ |..|..+++|+.|+|++|+|+.++ .|..+++
T Consensus 15 ~~l~~~~n~l~~iP~~~------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSSCCSSCCSCC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cEEEeCCCCCCccCCCc------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 34567777776665422 25899999999999987 458999999999999999999986 3677888
Q ss_pred CcEEECCCCCCCCccccccccccceEeeccCCccCCcccCCCCCCCCEEEccCCCCCCCc
Q 001271 215 LKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFS 274 (1111)
Q Consensus 215 L~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l~ 274 (1111)
|++|+|++|+|+.+++. .+..+++|+.|+|++|.+...+
T Consensus 83 L~~L~L~~N~l~~l~~~---------------------~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPRG---------------------AFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCEEECCSSCCCCCCTT---------------------TTTTCTTCSEEECCSSCBCTTB
T ss_pred hhEEECCCCccceeCHH---------------------HhccccCCCEEEeCCCCccccc
Confidence 88888888887766542 1444566666666666666544
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.03 E-value=4.6e-11 Score=136.43 Aligned_cols=110 Identities=24% Similarity=0.206 Sum_probs=54.5
Q ss_pred CccEEEccCCccccch-----hhh-cCCCCCcEEEccCCCCCCC------CCcCCCCCCcEEECCCCCCCCccccccccc
Q 001271 169 RLSFVSCSCNRLVIMD-----ESL-QLLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDLGFNNLRSIAAFSEVSC 236 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssLP-----~~L-~~L~nL~~LdLS~N~Ls~L------~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~ 236 (1111)
+|+.|+|++|.|+..+ ..+ ...++|+.|+|++|.|+.. ..+..+++|++|+|++|.|+.....
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~----- 201 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE----- 201 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH-----
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH-----
Confidence 4556666666665221 122 2345555555555555431 1233445555555555554431100
Q ss_pred cceEeeccCCccCCc-ccCCCCCCCCEEEccCCCCCCCchh---hhhcCCCCCcEEEecCCCCC
Q 001271 237 HIVKLVLRNNALTTL-RGIENLKSLEGLDISYNIISTFSEL---EFLASLPYLLNLWLEGNPLC 296 (1111)
Q Consensus 237 sL~~L~LS~N~Lt~L-~~L~~L~sL~~LdLS~N~Is~l~~l---~~L~~L~~L~~L~LsgNpLs 296 (1111)
.+ ..+..+++|+.|+|++|.|++.... ..+...++|+.|+|++|+|.
T Consensus 202 -------------~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 202 -------------LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp -------------HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred -------------HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 00 2344455666777777766643211 22344566777777777765
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=1e-09 Score=111.19 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=79.3
Q ss_pred CcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccccCCCCCC
Q 001271 89 LKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWN 168 (1111)
Q Consensus 89 Lk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L~~l~~L~ 168 (1111)
.+.|++++|.++ .+|..+. ++|++|+|++|.|++..|..|.. ++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~---------------------------------l~ 54 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDR---------------------------------LT 54 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTT---------------------------------CT
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcC---------------------------------cc
Confidence 467888888887 4666553 78888888888888765544433 34
Q ss_pred CccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCcc
Q 001271 169 RLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIA 229 (1111)
Q Consensus 169 ~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~ 229 (1111)
+|++|+|++|+|+.+|. .|..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.++...
T Consensus 55 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred cCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 78888888888887776 4578888888888888888875 4778888888888888876443
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.00 E-value=2.6e-11 Score=138.46 Aligned_cols=166 Identities=19% Similarity=0.177 Sum_probs=103.1
Q ss_pred CCCCcEEEccCCCCCCCCCccCC-----CCCCCCEEEeeCCCCCccchhhHh-hhhhhhhhhhccCCCccchhhh-cccc
Q 001271 86 LTSLKVVSALPPPARDPTPLSLL-----PFCRLKVLELRGCDLSTSAAKGLL-ELRHTLEKIICHNSTNALRHVF-ASRI 158 (1111)
Q Consensus 86 L~nLk~LdLs~N~Is~~iP~sLs-----~L~nL~~LdLS~N~Ls~~~P~~L~-~L~~LleLlLs~N~L~sL~~l~-~~~I 158 (1111)
+++|+.|+|++|.|+......|. ..++|+.|+|++|.|+......+. .+.++..+++++|.+....... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45677777777777643222222 125777777777777654333332 3456667777777654322111 1111
Q ss_pred ccccCCCCCCCccEEEccCCcccc-----chhhhcCCCCCcEEEccCCCCCCC------CCcCCCCCCcEEECCCCCCCC
Q 001271 159 VEIKDSPQWNRLSFVSCSCNRLVI-----MDESLQLLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDLGFNNLRS 227 (1111)
Q Consensus 159 ~~L~~l~~L~~L~~L~Ls~N~Lss-----LP~~L~~L~nL~~LdLS~N~Ls~L------~~L~~L~sL~~LdLS~N~Lt~ 227 (1111)
. ...++|+.|+|++|.|+. ++..+..+++|++|+|++|.|+.. ..+..+++|+.|+|++|.|+.
T Consensus 151 ~-----~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 151 L-----HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp H-----STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred H-----hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 0 124589999999999973 556678899999999999999862 246667788888888888765
Q ss_pred ccccccccccceEeeccCCccCCcccCCCCCCCCEEEccCCCCCCC
Q 001271 228 IAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTF 273 (1111)
Q Consensus 228 L~~l~~~L~sL~~L~LS~N~Lt~L~~L~~L~sL~~LdLS~N~Is~l 273 (1111)
....... ..+..+++|+.|+|++|.|+..
T Consensus 226 ~g~~~l~-----------------~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 226 TAALALA-----------------RAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHH-----------------HHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHH-----------------HHHHhCCCCCEEeccCCCCCHH
Confidence 3221000 1223345677777777777654
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=9.6e-10 Score=122.33 Aligned_cols=106 Identities=25% Similarity=0.355 Sum_probs=70.1
Q ss_pred EEEccCC-ccccchhhhcCCCCCcEEEccC-CCCCCCC--CcCCCCCCcEEECCCCCCCCccccccccccceEeeccCCc
Q 001271 172 FVSCSCN-RLVIMDESLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNA 247 (1111)
Q Consensus 172 ~L~Ls~N-~LssLP~~L~~L~nL~~LdLS~-N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~~L~LS~N~ 247 (1111)
.++++++ +|+.+|. +..+++|+.|+|++ |.|+.++ .|..+++|+.|+|++|+|+++++.
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---------------- 74 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD---------------- 74 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT----------------
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH----------------
Confidence 4567666 6777776 66677777777764 6666654 366666666666666666555432
Q ss_pred cCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 001271 248 LTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (1111)
Q Consensus 248 Lt~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~ 301 (1111)
.|..+++|+.|+|++|+|+.+++ ..+..++ |+.|+|.+|+|.|.+..
T Consensus 75 -----~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 75 -----AFHFTPRLSRLNLSFNALESLSW-KTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp -----GGGSCSCCCEEECCSSCCSCCCS-TTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred -----HhcCCcCCCEEeCCCCccceeCH-HHcccCC-ceEEEeeCCCccCCCcc
Confidence 24556677777777777777764 4444454 88888888888887653
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=3.6e-09 Score=122.04 Aligned_cols=122 Identities=12% Similarity=0.179 Sum_probs=51.7
Q ss_pred CCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCC-----Cccc-ccccccc
Q 001271 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLR-----SIAA-FSEVSCH 237 (1111)
Q Consensus 167 L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt-----~L~~-l~~~L~s 237 (1111)
+++|+.+.|..| ++.|+. .|.. .+|+.+.| .|.++.++ .|.++++|+.+.+.+|.+. .++. .+..+++
T Consensus 225 ~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 225 TSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK 301 (401)
T ss_dssp CTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred CCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence 344444444432 343433 2322 44455544 22333332 4444555555555444433 2222 2222444
Q ss_pred ceEeeccCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCC
Q 001271 238 IVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295 (1111)
Q Consensus 238 L~~L~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpL 295 (1111)
|+.+.|. +.++.+ ..|.+|.+|+.|.|..| ++.++. .+|..+ +|+.|.+.+|.+
T Consensus 302 L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~-~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 302 LARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF-SAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT-TSSSSS-CCCEEEECCSSC
T ss_pred CCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH-HhCCCC-CCCEEEEcCCCC
Confidence 5555554 224444 23444555555555332 443332 344444 455555555443
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=6.5e-10 Score=123.72 Aligned_cols=85 Identities=22% Similarity=0.264 Sum_probs=66.4
Q ss_pred CCCCCCccEEEccC-Cccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccccccccccce
Q 001271 164 SPQWNRLSFVSCSC-NRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIV 239 (1111)
Q Consensus 164 l~~L~~L~~L~Ls~-N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~ 239 (1111)
++.+++|+.|+|++ |.|+.+|. .|..+++|+.|+|++|+|++++ .|..+++|+.|+|++|+|+.+++.......|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 34567999999996 99998875 7999999999999999999974 68899999999999999998876433211244
Q ss_pred EeeccCCcc
Q 001271 240 KLVLRNNAL 248 (1111)
Q Consensus 240 ~L~LS~N~L 248 (1111)
.|+|.+|.|
T Consensus 107 ~l~l~~N~~ 115 (347)
T 2ifg_A 107 ELVLSGNPL 115 (347)
T ss_dssp EEECCSSCC
T ss_pred EEEeeCCCc
Confidence 444444443
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.88 E-value=7.5e-09 Score=119.39 Aligned_cols=218 Identities=11% Similarity=0.128 Sum_probs=140.0
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccc
Q 001271 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (1111)
Q Consensus 82 ~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L 161 (1111)
.|.++ +|+.+.|..+ +......+|.+ .+|+.+.|.. .+....+..|.++.+|..+.+..|++..++...+.
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~----- 201 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV----- 201 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-----
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-----
Confidence 45554 5777776544 55455555655 3577777764 56555556677777777777766666665543322
Q ss_pred cCCCCCCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccc-ccccccc
Q 001271 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCH 237 (1111)
Q Consensus 162 ~~l~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~s 237 (1111)
..+|+.+.|.. .++.|+. .|..+++|+.|.|..| ++.++ .|.+ .+|+.+.| .|.++.++. .+..+++
T Consensus 202 -----~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 202 -----YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPE 272 (401)
T ss_dssp -----TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTT
T ss_pred -----ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCC
Confidence 24677777774 3666655 6777788888888764 55543 4555 67888877 445666654 3334677
Q ss_pred ceEeeccCCccC-----Cc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcC
Q 001271 238 IVKLVLRNNALT-----TL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA 310 (1111)
Q Consensus 238 L~~L~LS~N~Lt-----~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~ 310 (1111)
|+.+.+.+|.+. .+ ..|..|++|+.++|. |.++.++. ..|..+++|+.|.|..| +. .+....|..+
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~-~aF~~c~~L~~l~lp~~-l~---~I~~~aF~~~- 345 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ-GLLGGNRKVTQLTIPAN-VT---QINFSAFNNT- 345 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT-TTTTTCCSCCEEEECTT-CC---EECTTSSSSS-
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh-hhhcCCCCccEEEECcc-cc---EEcHHhCCCC-
Confidence 888888777665 34 367778888888887 44776665 66777788888888544 43 2334456666
Q ss_pred CCCeeecCCCcCCh
Q 001271 311 HPAKLKVDGKEIST 324 (1111)
Q Consensus 311 ~L~~L~LdgN~It~ 324 (1111)
.|+.+.+.+|.+..
T Consensus 346 ~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 346 GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CCCEEEECCSSCCB
T ss_pred CCCEEEEcCCCCcc
Confidence 77778887776643
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.39 E-value=4.9e-07 Score=103.13 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=90.0
Q ss_pred hHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccc
Q 001271 78 QLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASR 157 (1111)
Q Consensus 78 ~Lp~~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~ 157 (1111)
.+...+..+|+|+.|+|++|.-. .++. +. +++|++|+|..|.++......+..
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~------------------------ 215 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILG------------------------ 215 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHH------------------------
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHH------------------------
Confidence 46677888999999999887311 2333 43 789999999999887543333331
Q ss_pred cccccCCCCCCCccEEEccC--Cc------cccchhhh--cCCCCCcEEEccCCCCCCC-----CCcCCCCCCcEEECCC
Q 001271 158 IVEIKDSPQWNRLSFVSCSC--NR------LVIMDESL--QLLPAVETLDLSRNKFAKV-----DNLRKCVNLKHLDLGF 222 (1111)
Q Consensus 158 I~~L~~l~~L~~L~~L~Ls~--N~------LssLP~~L--~~L~nL~~LdLS~N~Ls~L-----~~L~~L~sL~~LdLS~ 222 (1111)
..+++|+.|+|+. |. +..+...+ ..+|+|+.|+|.+|.+... .....+++|++|+|+.
T Consensus 216 -------~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 216 -------SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp -------SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred -------ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 0133555555532 11 22222222 2466777777777766531 1112456777777777
Q ss_pred CCCCCcc-----ccccccccceEeeccCCccCCc--ccCCC-CCCCCEEEccCCC
Q 001271 223 NNLRSIA-----AFSEVSCHIVKLVLRNNALTTL--RGIEN-LKSLEGLDISYNI 269 (1111)
Q Consensus 223 N~Lt~L~-----~l~~~L~sL~~L~LS~N~Lt~L--~~L~~-L~sL~~LdLS~N~ 269 (1111)
|.|+... .....+++|+.|+|++|.|+.. ..+.. + ...++++.|+
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 7776521 1113457777888877776653 12221 1 3456776665
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=1.2e-07 Score=104.10 Aligned_cols=113 Identities=31% Similarity=0.457 Sum_probs=78.1
Q ss_pred cCCCCCCcE--EECCCCCCCCccc----cccccccceEeeccCCccCCcccCC----CCCCCCEEEccCCCCCCCchhhh
Q 001271 209 LRKCVNLKH--LDLGFNNLRSIAA----FSEVSCHIVKLVLRNNALTTLRGIE----NLKSLEGLDISYNIISTFSELEF 278 (1111)
Q Consensus 209 L~~L~sL~~--LdLS~N~Lt~L~~----l~~~L~sL~~L~LS~N~Lt~L~~L~----~L~sL~~LdLS~N~Is~l~~l~~ 278 (1111)
+...+.|.. ++++.|....++. ....+++|+.|+|++|+|+.++.+. .+++|+.|+|++|+|+++..+..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 333344443 5556665443332 1123577788888888777765443 68999999999999999876666
Q ss_pred hcCCCCCcEEEecCCCCCCC----ccchhhHhhhcCCCCeeecCCCcCCh
Q 001271 279 LASLPYLLNLWLEGNPLCCS----RWYRAQVFSYFAHPAKLKVDGKEIST 324 (1111)
Q Consensus 279 L~~L~~L~~L~LsgNpLs~~----~~~r~~if~~l~~L~~L~LdgN~It~ 324 (1111)
+..+ +|+.|+|++||++.. ..|+..++..++.| ..|||.+++.
T Consensus 217 l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L--~~LDg~~v~p 263 (267)
T 3rw6_A 217 IKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKL--LRLDGHELPP 263 (267)
T ss_dssp GTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTC--CEESSCBCCC
T ss_pred cccC-CcceEEccCCcCccccCcchhHHHHHHHHCccc--CeECCcCCCC
Confidence 7666 999999999999752 36777788878554 5677877753
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=3.1e-07 Score=104.79 Aligned_cols=14 Identities=0% Similarity=-0.244 Sum_probs=7.4
Q ss_pred hcCCCCCcEEEccC
Q 001271 83 LKLLTSLKVVSALP 96 (1111)
Q Consensus 83 L~~L~nLk~LdLs~ 96 (1111)
+..+++|+.|.+..
T Consensus 135 ~~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 135 KEKFAHFEGLFWGD 148 (362)
T ss_dssp HHHHTTCSEEEECC
T ss_pred hhhcchhhheeecC
Confidence 34455555555544
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=5e-07 Score=92.88 Aligned_cols=121 Identities=20% Similarity=0.148 Sum_probs=88.5
Q ss_pred hhHHHHhcCCCCCcEEEccCC-CCCCC----CCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccch
Q 001271 77 EQLRRILKLLTSLKVVSALPP-PARDP----TPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALR 151 (1111)
Q Consensus 77 ~~Lp~~L~~L~nLk~LdLs~N-~Is~~----iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~ 151 (1111)
..+...+...++|+.|+|++| .|... +...+...++|++|+|++|.|.......+...- ..
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-------~~------- 91 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-------KV------- 91 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-------HH-------
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-------Hh-------
Confidence 446778888999999999999 88652 344566678999999999999764433333221 11
Q ss_pred hhhccccccccCCCCCCCccEEEccCCcccc-----chhhhcCCCCCcEEEc--cCCCCCCC------CCcCCCCCCcEE
Q 001271 152 HVFASRIVEIKDSPQWNRLSFVSCSCNRLVI-----MDESLQLLPAVETLDL--SRNKFAKV------DNLRKCVNLKHL 218 (1111)
Q Consensus 152 ~l~~~~I~~L~~l~~L~~L~~L~Ls~N~Lss-----LP~~L~~L~nL~~LdL--S~N~Ls~L------~~L~~L~sL~~L 218 (1111)
.+.|++|+|++|.|+. +...+...+.|++|+| ++|.|..- ..+...++|++|
T Consensus 92 ---------------n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L 156 (185)
T 1io0_A 92 ---------------NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKF 156 (185)
T ss_dssp ---------------CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred ---------------CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEE
Confidence 2378899999998883 5567777888999999 77888752 245566788888
Q ss_pred ECCCCCCC
Q 001271 219 DLGFNNLR 226 (1111)
Q Consensus 219 dLS~N~Lt 226 (1111)
+|++|.|.
T Consensus 157 ~L~~n~i~ 164 (185)
T 1io0_A 157 GYHFTQQG 164 (185)
T ss_dssp ECCCSSHH
T ss_pred eccCCCCC
Confidence 88888775
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.10 E-value=2e-06 Score=88.37 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=36.2
Q ss_pred CCccEEEccCCccc-----cchhhhcCCCCCcEEEccCCCCCCC------CCcCCCCCCcEEEC--CCCCCCC
Q 001271 168 NRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDL--GFNNLRS 227 (1111)
Q Consensus 168 ~~L~~L~Ls~N~Ls-----sLP~~L~~L~nL~~LdLS~N~Ls~L------~~L~~L~sL~~LdL--S~N~Lt~ 227 (1111)
++|++|+|++|.|. .+...+...++|++|+|++|.|..- ..+...++|++|+| ++|.|+.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 36777777777766 2334455556677777777766641 24555566666666 5566553
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.93 E-value=4.2e-05 Score=86.92 Aligned_cols=192 Identities=13% Similarity=0.068 Sum_probs=81.5
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhhccccccc
Q 001271 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (1111)
Q Consensus 82 ~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~~~~I~~L 161 (1111)
.|.++++|+.+.|.++. .......|.++.+|+.++|..| ++......+.+...|..+.+..+. ..+...
T Consensus 157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~-------- 225 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL-YYLGDF-------- 225 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC-CEECTT--------
T ss_pred hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc-eEeehh--------
Confidence 45566666666664432 2233445556666666666554 333334444444444333322221 111110
Q ss_pred cCCCCCCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCC-CCCcCCCCCCcEEECCCCCCCCccccccccccce
Q 001271 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK-VDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIV 239 (1111)
Q Consensus 162 ~~l~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~-L~~L~~L~sL~~LdLS~N~Lt~L~~l~~~L~sL~ 239 (1111)
......|+.+.+..+ ++.++. .+..+..|+.+.+..+...- ...+..+..|+.+.+..+.+.. ..+..+.+|+
T Consensus 226 --~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~ 300 (394)
T 4fs7_A 226 --ALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLT 300 (394)
T ss_dssp --TTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCC
T ss_pred --hcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--cccccccccc
Confidence 112234555555432 333322 45555666666665543221 1134444444444443332111 1122234444
Q ss_pred EeeccCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecC
Q 001271 240 KLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEG 292 (1111)
Q Consensus 240 ~L~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~Lsg 292 (1111)
.+.+..+ ++.+ .+|.++.+|+.++|..+ ++.++. .+|.++.+|+.+.+..
T Consensus 301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK-RSFRGCTSLSNINFPL 352 (394)
T ss_dssp EEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT-TTTTTCTTCCEECCCT
T ss_pred ccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH-HhccCCCCCCEEEECc
Confidence 4444332 3333 13444444555544322 333332 3444444455544443
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.85 E-value=0.00025 Score=80.52 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=69.0
Q ss_pred cCCCCCCcEEECCCCCCCCccc-cccccccceEeeccCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCC
Q 001271 209 LRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYL 285 (1111)
Q Consensus 209 L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~L~LS~N~Lt~L--~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L 285 (1111)
|..+..|+.+.+..+. ..+.. .+..++.|+.+.+. +.++.+ ..|.++.+|+.++|..+ ++.+.. .+|..+.+|
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTC
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCCCCC
Confidence 4555666666665432 22332 23345677777775 456666 36888888888888754 666655 678888889
Q ss_pred cEEEecCCCCCCCccchhhHhhhcCCCCeeecCCCc
Q 001271 286 LNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (1111)
Q Consensus 286 ~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN~ 321 (1111)
+.+.|..+ ++ .+....|..+..|+.+.+.++.
T Consensus 337 ~~i~ip~s-v~---~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPSS-VT---KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECTT-CC---BCCGGGGTTCTTCCEEEESSCH
T ss_pred CEEEECcc-cC---EEhHhHhhCCCCCCEEEECCce
Confidence 98888544 43 2335568888888888888764
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.76 E-value=0.0002 Score=81.31 Aligned_cols=228 Identities=10% Similarity=0.117 Sum_probs=123.6
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchhhh-------
Q 001271 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVF------- 154 (1111)
Q Consensus 82 ~L~~L~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~l~------- 154 (1111)
+|.++.+|+.+.|. +.++.....+|.++++|+.++|..+ ++......|..+..|....+..+ +..+....
T Consensus 66 AF~~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 67788888888885 3466556677888888888888754 55555556666665554443322 22222111
Q ss_pred ----ccccccc--cCCCCCCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCC--
Q 001271 155 ----ASRIVEI--KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFN-- 223 (1111)
Q Consensus 155 ----~~~I~~L--~~l~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N-- 223 (1111)
+..+..+ ..+..+.+|+.+.+..+ +..++. .|..+++|+.+.+..| ++.+. .+..+..|+.+.+..+
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred ccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence 1111111 23556778888888755 444544 6777888888888665 33332 3444444444433322
Q ss_pred -------------------CCCCccc-cccccccceEeeccCCccCC--------------------c--ccCCCCCCCC
Q 001271 224 -------------------NLRSIAA-FSEVSCHIVKLVLRNNALTT--------------------L--RGIENLKSLE 261 (1111)
Q Consensus 224 -------------------~Lt~L~~-l~~~L~sL~~L~LS~N~Lt~--------------------L--~~L~~L~sL~ 261 (1111)
.++.+.. ....+..|+.+.+..+...- + ..+..+.+|+
T Consensus 221 ~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 221 YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLT 300 (394)
T ss_dssp EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCC
T ss_pred EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecccccccccccc
Confidence 1111211 12234556666665543211 1 1344556666
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCC
Q 001271 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (1111)
Q Consensus 262 ~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN 320 (1111)
.+.+..+ ++.++. .+|..+.+|+.+.|..+ +. .+....|..+..|+.+.|..+
T Consensus 301 ~i~l~~~-i~~I~~-~aF~~c~~L~~i~lp~~-v~---~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 301 EVKLLDS-VKFIGE-EAFESCTSLVSIDLPYL-VE---EIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp EEEECTT-CCEECT-TTTTTCTTCCEECCCTT-CC---EECTTTTTTCTTCCEECCCTT
T ss_pred ccccccc-cceech-hhhcCCCCCCEEEeCCc-cc---EEhHHhccCCCCCCEEEECcc
Confidence 6666543 555543 45666677777776433 32 223344666666666666544
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.66 E-value=2.1e-05 Score=86.36 Aligned_cols=91 Identities=29% Similarity=0.369 Sum_probs=55.1
Q ss_pred EEccCCccccchhh----hcCCCCCcEEEccCCCCCCCCCc----CCCCCCcEEECCCCCCCCccccccccc--cceEee
Q 001271 173 VSCSCNRLVIMDES----LQLLPAVETLDLSRNKFAKVDNL----RKCVNLKHLDLGFNNLRSIAAFSEVSC--HIVKLV 242 (1111)
Q Consensus 173 L~Ls~N~LssLP~~----L~~L~nL~~LdLS~N~Ls~L~~L----~~L~sL~~LdLS~N~Lt~L~~l~~~L~--sL~~L~ 242 (1111)
++++.|....++.. ...+++|+.|+|++|+|+.++.+ ..+++|+.|+|++|.|+++..+. .+. +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~-~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD-KIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG-GGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh-hcccCCcceEE
Confidence 45566655544332 23567777777777777765433 35677777777777777664322 122 677777
Q ss_pred ccCCccCC-c--------ccCCCCCCCCEEE
Q 001271 243 LRNNALTT-L--------RGIENLKSLEGLD 264 (1111)
Q Consensus 243 LS~N~Lt~-L--------~~L~~L~sL~~Ld 264 (1111)
|++|.+.. + ..+..+|+|+.||
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 77777754 1 1245667777775
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.59 E-value=0.00057 Score=77.62 Aligned_cols=130 Identities=10% Similarity=0.189 Sum_probs=89.8
Q ss_pred cccchh-hhcCCCCCcEEEccCCCCCCC--CCcCCCCCCcEEECCCCCCCCccccc-cccccceEeeccCCccCCc--cc
Q 001271 180 LVIMDE-SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAFS-EVSCHIVKLVLRNNALTTL--RG 253 (1111)
Q Consensus 180 LssLP~-~L~~L~nL~~LdLS~N~Ls~L--~~L~~L~sL~~LdLS~N~Lt~L~~l~-~~L~sL~~L~LS~N~Lt~L--~~ 253 (1111)
++.+.. .|..+..|+.+.+..+.. .+ ..+.++.+|+.+.+. +.++.++... ..+.+|+.+.|..+ ++.+ .+
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred ceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence 344433 678889999999876543 33 378889999999996 5677777643 34789999999765 7776 37
Q ss_pred CCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCCC
Q 001271 254 IENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (1111)
Q Consensus 254 L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~LdgN 320 (1111)
|.+|.+|+.+.|..+ ++.+.. .+|.++.+|+.+.+.+|... ...+.....|+.+.+..+
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~-~aF~~C~~L~~i~~~~~~~~------~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPE-SAFSNCTALNNIEYSGSRSQ------WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCG-GGGTTCTTCCEEEESSCHHH------HHTCBCCCCC--------
T ss_pred hhCCCCCCEEEECcc-cCEEhH-hHhhCCCCCCEEEECCceee------hhhhhccCCCCEEEeCCC
Confidence 999999999999754 777776 78899999999999987642 122344455666655444
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.09 E-value=0.0074 Score=67.65 Aligned_cols=125 Identities=11% Similarity=0.113 Sum_probs=74.6
Q ss_pred hcCCCCCcEEEccCCCCCCC--CCcCCCCCCcEEECCCCCCCCcccc-ccccccceEeeccCCccCCc--ccCCCCCCCC
Q 001271 187 LQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNNALTTL--RGIENLKSLE 261 (1111)
Q Consensus 187 L~~L~nL~~LdLS~N~Ls~L--~~L~~L~sL~~LdLS~N~Lt~L~~l-~~~L~sL~~L~LS~N~Lt~L--~~L~~L~sL~ 261 (1111)
+....+|+.+.+..+ +..+ ..+..+..|+.+.+..+ ++.+... +..+..|+.+.+..+ ++.+ ..|..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 344555666555433 2322 24566677777777654 5555442 233566777777543 5555 2577777788
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccchhhHhhhcCCCCeeecCC
Q 001271 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (1111)
Q Consensus 262 ~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r~~if~~l~~L~~L~Ldg 319 (1111)
.+.+.++.++.++. ..|..+.+|+.+.|..+ +. .+....|..+..|+.+.|..
T Consensus 290 ~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~---~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 290 KVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LK---TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CC---EECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccceehh-hhhcCCCCCCEEEcCcc-cc---EEHHHHhhCCCCCCEEEECC
Confidence 88887777777665 56777777887777543 33 22334566666676666643
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.09 E-value=0.00045 Score=72.63 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=82.1
Q ss_pred hHHHHhcCCCCCcEEEccCC-CCCCC----CCccCCCCCCCCEEEeeCCCCCccchhhHhhhhhhhhhhhccCCCccchh
Q 001271 78 QLRRILKLLTSLKVVSALPP-PARDP----TPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRH 152 (1111)
Q Consensus 78 ~Lp~~L~~L~nLk~LdLs~N-~Is~~----iP~sLs~L~nL~~LdLS~N~Ls~~~P~~L~~L~~LleLlLs~N~L~sL~~ 152 (1111)
.+...+.+-+.|+.|+|++| .|.+. +...+..-+.|+.|+|++|.|.......|...- ..|
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-------~~N------- 97 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-------ETS------- 97 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-------HHC-------
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-------hcC-------
Confidence 45667777889999999885 77542 344566678899999999999765554444331 122
Q ss_pred hhccccccccCCCCCCCccEEEccCCccc-----cchhhhcCCCCCcEEEccCCC---CCC-----C-CCcCCCCCCcEE
Q 001271 153 VFASRIVEIKDSPQWNRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNK---FAK-----V-DNLRKCVNLKHL 218 (1111)
Q Consensus 153 l~~~~I~~L~~l~~L~~L~~L~Ls~N~Ls-----sLP~~L~~L~nL~~LdLS~N~---Ls~-----L-~~L~~L~sL~~L 218 (1111)
+.|+.|+|+.|.|. .|.+.+..-+.|+.|+|++|. |.. + ..+..-+.|+.|
T Consensus 98 ---------------~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L 162 (197)
T 1pgv_A 98 ---------------PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRV 162 (197)
T ss_dssp ---------------SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred ---------------CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeE
Confidence 37889999999888 444566677778888887653 332 1 245556778888
Q ss_pred ECCCCCCC
Q 001271 219 DLGFNNLR 226 (1111)
Q Consensus 219 dLS~N~Lt 226 (1111)
+++.|.+.
T Consensus 163 ~l~~~~~g 170 (197)
T 1pgv_A 163 GISFASME 170 (197)
T ss_dssp ECCCCCHH
T ss_pred eccCCCcc
Confidence 88776543
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.77 E-value=0.00044 Score=71.51 Aligned_cols=36 Identities=8% Similarity=0.178 Sum_probs=23.7
Q ss_pred CCCcEEEccCCCCCC--CCCcCCCCCCcEEECCCCC-CC
Q 001271 191 PAVETLDLSRNKFAK--VDNLRKCVNLKHLDLGFNN-LR 226 (1111)
Q Consensus 191 ~nL~~LdLS~N~Ls~--L~~L~~L~sL~~LdLS~N~-Lt 226 (1111)
..|+.|||+++.|+. +..+..+++|++|+|++|. |+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence 457777777777664 3456667777777777763 44
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.77 E-value=0.002 Score=62.93 Aligned_cols=62 Identities=21% Similarity=0.216 Sum_probs=49.9
Q ss_pred eEeeccCCccC--CcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccch
Q 001271 239 VKLVLRNNALT--TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYR 302 (1111)
Q Consensus 239 ~~L~LS~N~Lt--~L~~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgNpLs~~~~~r 302 (1111)
..++.+++.|+ .+|. .-.++|+.|+|++|+|+.++. ..|..+++|+.|+|.+||+.|.+...
T Consensus 11 ~~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC~l~ 74 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCDCRLV 74 (130)
T ss_dssp TEEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCSGGGH
T ss_pred CEEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeeccCccH
Confidence 36777777777 6652 123579999999999999986 77889999999999999999997643
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.68 E-value=0.001 Score=68.81 Aligned_cols=39 Identities=8% Similarity=0.058 Sum_probs=25.6
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCCEEEeeCCC-CCc
Q 001271 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-LST 125 (1111)
Q Consensus 87 ~nLk~LdLs~N~Is~~iP~sLs~L~nL~~LdLS~N~-Ls~ 125 (1111)
.+|+.|+|+++.|++..-..+..+++|++|+|++|. |+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH
Confidence 357777777777665555556667777777777774 554
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.65 E-value=0.01 Score=66.44 Aligned_cols=124 Identities=14% Similarity=0.256 Sum_probs=94.7
Q ss_pred CCCCCccEEEccCCccccchh-hhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCCCccc-cccccccceE
Q 001271 165 PQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVK 240 (1111)
Q Consensus 165 ~~L~~L~~L~Ls~N~LssLP~-~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt~L~~-l~~~L~sL~~ 240 (1111)
..+.+|+.+.+..+ +..++. .+..+..|+.+.+..+ ++.+. .+..+.+|+.+.+..+ ++.++. .+..+.+|+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 34567888887654 554544 6788899999999876 66653 6788899999998654 666655 3445789999
Q ss_pred eeccCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCC
Q 001271 241 LVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (1111)
Q Consensus 241 L~LS~N~Lt~L~--~L~~L~sL~~LdLS~N~Is~l~~l~~L~~L~~L~~L~LsgN 293 (1111)
+.+.++.++.++ .|.++.+|+.+.|..+ ++.++. .+|.++.+|+.+.+..+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV-YAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCCCCCCTT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH-HHhhCCCCCCEEEECCc
Confidence 999999898883 7899999999999754 777765 67888999999988654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.55 E-value=0.0023 Score=67.21 Aligned_cols=109 Identities=12% Similarity=0.103 Sum_probs=56.8
Q ss_pred hhcCCCCCcEEEccCC-CCCC-----C-CCcCCCCCCcEEECCCCCCCCcc-----ccccccccceEeeccCCccCCc--
Q 001271 186 SLQLLPAVETLDLSRN-KFAK-----V-DNLRKCVNLKHLDLGFNNLRSIA-----AFSEVSCHIVKLVLRNNALTTL-- 251 (1111)
Q Consensus 186 ~L~~L~nL~~LdLS~N-~Ls~-----L-~~L~~L~sL~~LdLS~N~Lt~L~-----~l~~~L~sL~~L~LS~N~Lt~L-- 251 (1111)
.+..-+.|+.|+|++| .|.. + ..+..-+.|+.|+|++|.|.... .....-+.|+.|+|++|.|+.-
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3344556666666664 5543 1 24555566777777777665321 1122234566666666666542
Q ss_pred ----ccCCCCCCCCEEEccCCCCCCCch------hhhhcCCCCCcEEEecCCC
Q 001271 252 ----RGIENLKSLEGLDISYNIISTFSE------LEFLASLPYLLNLWLEGNP 294 (1111)
Q Consensus 252 ----~~L~~L~sL~~LdLS~N~Is~l~~------l~~L~~L~~L~~L~LsgNp 294 (1111)
..+..-+.|+.|+|++|....+.. ...+..-+.|+.|+++.|.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 345555667777776543211111 1234455566666665543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.57 E-value=0.014 Score=56.77 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=38.4
Q ss_pred cEEEccCCccc--cchhhhcCCCCCcEEEccCCCCCCCC--CcCCCCCCcEEECCCCCCC
Q 001271 171 SFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLR 226 (1111)
Q Consensus 171 ~~L~Ls~N~Ls--sLP~~L~~L~nL~~LdLS~N~Ls~L~--~L~~L~sL~~LdLS~N~Lt 226 (1111)
..+++++++|+ .+|..+ .++|+.|+|++|+|+.++ .|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36778888887 777543 346778888888887775 4667777777777777654
No 165
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=43.64 E-value=12 Score=36.37 Aligned_cols=30 Identities=33% Similarity=0.701 Sum_probs=24.5
Q ss_pred CCCCCCcc--------------hhhhhhhhhhhHHHHHhhccce
Q 001271 595 RPGSPPHY--------------REDILHRRHNLVAEILQLSAES 624 (1111)
Q Consensus 595 ~p~spp~~--------------~~d~l~rr~~~~~e~lq~s~~~ 624 (1111)
+|++||.| +|-+-..||.||||++++-.++
T Consensus 72 SPSPpP~Yd~~G~R~NTRE~R~r~~LE~ER~~lIe~~~k~~P~f 115 (124)
T 4fxw_B 72 SPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDF 115 (124)
T ss_dssp CCCCCCCBCTTSCBSSCHHHHHHHHHHHHHHHHHHHGGGTCSSC
T ss_pred CCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHHHHCcCC
Confidence 57788987 5667788999999999987653
Done!