BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001272
(1110 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6A332|ALY3_ARATH Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1
Length = 1132
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/1196 (46%), Positives = 727/1196 (60%), Gaps = 152/1196 (12%)
Query: 1 MAPTRRSKSVNKRVAYTSEVASKKKAENADRSGKRKRKLSDMLGPQWSKEELERFYEAYR 60
MAP+R KS K+ V+ K E+ ++ +RKRKLSDMLGPQWSKEELERFYE YR
Sbjct: 1 MAPSRSKKSKYKKKPRAKAVSPHKDEESMSKTKQRKRKLSDMLGPQWSKEELERFYEGYR 60
Query: 61 KYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGIL-AGSD 119
K+GK+WKK+A V +R+AEMVEAL+TMN+AYLSLPEGTASVVGL AMMTDHY +L GSD
Sbjct: 61 KFGKEWKKVAGFVHSRSAEMVEALYTMNKAYLSLPEGTASVVGLTAMMTDHYSVLHGGSD 120
Query: 120 GEQESDEATGSSQKSQKCAGGKFQNPPPKGSDGPSPDLLNFQSAAPNYGCLSLLKKRRSG 179
EQE++E + + + K + K + P G +G S D L F+S++ G + LKKRR+
Sbjct: 121 SEQENNEGIETPRSAPKRSRVKSSDHPSIGLEGLS-DRLQFRSSS---GFMPSLKKRRTE 176
Query: 180 SRPRAVAKRTPRVPVSYSYDKDNTEKYISPIKQGLKPRLGSIDDDVAHEIALALTEASQR 239
+ PRAV KRTPR+P+SY+ +KD E+Y+SP+K+GL + DDD+ HEIALAL EASQR
Sbjct: 177 TMPRAVGKRTPRIPISYTLEKDTRERYLSPVKRGLNQKGDDTDDDMEHEIALALAEASQR 236
Query: 240 GGSLLVSQTPKRKRGKPSPVQKGSRTCDVSEMNSSKPHGSEMDEDGRELSLGSTDADNGY 299
GGS S TP RK P +KG R ++ +K H ++M++ E SLGST+ADN
Sbjct: 237 GGSTKNSHTPNRKAKMYPPDKKGERMRADIDLAIAKLHATDMEDVRCEPSLGSTEADNAD 296
Query: 300 YSRDKIYLMDAETADTVEIQQKGKRYHSKKLKQEESVSNHLDDIKEACSGTEEGQDMVVM 359
YS + L E + VE QQKG+ Y+ +++ +E +D KEACSGT+E +
Sbjct: 297 YSGGRNDLTHGEGSSAVEKQQKGRTYYRRRVGIKE------EDAKEACSGTDEAPSLGAP 350
Query: 360 KGKFAMEIADEKNSRSYSKGSKKRSKKVLFKRDESSEFDALQTLADLSLMMPETTADTEL 419
KF E + +Y K S+++SKK LF DE + DAL TLADLSLMMPET DTE
Sbjct: 351 DEKFEQEREGKALKFTY-KVSRRKSKKSLFTADEDTACDALHTLADLSLMMPETATDTES 409
Query: 420 SLQLKEEKPEAVNESKLKGNRSSTGVKDTAIKTSKLGKDCTDDVSVIPESEEGNHLTNSG 479
S+Q +E+K S KG ++ K ++++ SK + ++D+ PE E + ++S
Sbjct: 410 SVQAEEKKAGEAYVSDFKGTDPASMSKSSSLRNSKQRRYGSNDL-CNPELERKSP-SSSL 467
Query: 480 NRTKRQKFLPIKLRMDATE-------------------ELKKFISKGKRSLSASQSKHGK 520
+ +RQK LP K+R + + E K + +GKRS S S K
Sbjct: 468 IQKRRQKALPAKVRENVLKDELAASSQVIEPCNSKGIGEEYKPVGRGKRSASIRNSHEKK 527
Query: 521 LVKPPEHTSSTDHEKEGNNSASSTAHVRTANQVNLPTKVRSRRKMNMQKLLIERDKMSSE 580
K +HTSS+++ E + SA S A ++ QVNLPTKVRSRRK+ +K L D SE
Sbjct: 528 SAKSHDHTSSSNNIVEEDESAPSNAVIK--KQVNLPTKVRSRRKIVTEKPLTIDDGKISE 585
Query: 581 DILKSSEDIFNDQNRTNSSFFDRAIKQKEQLSNCLSWYQVRVWCVSEWFYSTIDYPWFAK 640
I E+ S+C+S ++ R WC+ EWFYS IDYPWFA+
Sbjct: 586 TI--------------------------EKFSHCISSFRARRWCIFEWFYSAIDYPWFAR 619
Query: 641 REFVEYLDHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFLKEEKEKLNQYRESVRNHYS 700
+EFVEYLDHVGL HVPRLTRVEWGVIRSSLG+PRRFSEQFLKEEKEKL YR+SVR HY
Sbjct: 620 QEFVEYLDHVGLGHVPRLTRVEWGVIRSSLGKPRRFSEQFLKEEKEKLYLYRDSVRKHYD 679
Query: 701 ELRSGTKEGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEF 760
EL +G +EGLP DLARPL V QR+I +HP++REI DG+VLTV+H RYR+QFD ELG+EF
Sbjct: 680 ELNTGMREGLPMDLARPLNVSQRVICLHPKSREIHDGNVLTVDHCRYRIQFDNPELGVEF 739
Query: 761 VQDIDCMPLNPLENMPASLTRPNVAFGKF-MDNFTELQMNGQPRERDIEGYMKFTPCENL 819
V+D +CMPLNPLENMPASL R + AF + + N E +M+ + +E +EGY K + CE
Sbjct: 740 VKDTECMPLNPLENMPASLAR-HYAFSNYHIQNPIEEKMHERAKESMLEGYPKLS-CET- 796
Query: 820 ETAYAPSHISPSTNYPINNLLQQHK-GVSYTDSEVHVG---------------STG--QA 861
H+ S NY I+N L+Q K +S ++ + G S G QA
Sbjct: 797 ------GHLLSSPNYNISNSLKQEKVDISSSNPQAQDGVDEALALQLFNSQPSSIGQIQA 850
Query: 862 KEEDVLALSHLRHALDKK------------------------------------------ 879
+E DV ALS L ALDKK
Sbjct: 851 READVQALSELTRALDKKELVLRELKCMNDEVVESQKDGHNNALKDSESFKKQYAAVLFQ 910
Query: 880 -------VASALFCLRQRNTYQGNTCLTGLKPMSGLGNLGGGLPNSFDHSAYQTPESGPH 932
V+ AL LRQRNTYQ N + ++ MS G G L D++A T +G H
Sbjct: 911 LSEINEQVSLALLGLRQRNTYQENVPYSSIRRMSKSGEPDGQLTYE-DNNASDT--NGFH 967
Query: 933 VVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKLAGNDSGMPSIRSS 992
V E+VESSR KA+KMV AVQAL L K+ N +EEA+D+VNN+L+ +
Sbjct: 968 VSEIVESSRIKARKMVYRAVQALELLRKDENNNVNMEEAIDFVNNQLSID---------Q 1018
Query: 993 TSADLVHSSRNSQDQQLETHTTNLLANSRAPDSTLNNSSDENSAHIPLELIAHCVAALFM 1052
T V ++ QDQ+L + T N +++ A DS LN D+N +P +L++ C+A L M
Sbjct: 1019 TEGSSVQQTQGGQDQRLPS-TPNPPSSTPANDSHLNQ-PDQNDLQVPSDLVSRCIATLLM 1076
Query: 1053 IQRCTERDFPPADVALVLDSAVTSLQPCCSQNLPVYAEIQKCMGIIRNQILALIPT 1108
IQ+CTER FPP++VA VLDSAV SLQPCCSQNLP+Y EIQKCMGIIRNQILAL+P+
Sbjct: 1077 IQKCTERQFPPSEVAQVLDSAVASLQPCCSQNLPIYTEIQKCMGIIRNQILALVPS 1132
>sp|Q6A333|ALY2_ARATH Protein ALWAYS EARLY 2 OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1
Length = 1051
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/1170 (40%), Positives = 653/1170 (55%), Gaps = 181/1170 (15%)
Query: 1 MAPTRRSKSVNKRVAYTSEVASKKKAENADRSGKRKRKLSDMLGPQWSKEELERFYEAYR 60
MAP R+S+SVNKR +T+E + +K A + K ++KLSD LGPQW++ ELERFY+AYR
Sbjct: 1 MAPVRKSRSVNKR--FTNETSPRKDA-GKSKKNKLRKKLSDKLGPQWTRLELERFYDAYR 57
Query: 61 KYGKDWKKIAAAVRN-RTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILAGSD 119
K+G++W+++AAA+RN R+ +MVEALF MNRAYLSLPEGTASV GLIAMMTDHY ++ GS
Sbjct: 58 KHGQEWRRVAAAIRNSRSVDMVEALFNMNRAYLSLPEGTASVAGLIAMMTDHYSVMEGSG 117
Query: 120 GEQESDEATGSSQKSQKCAGGKFQNPPPKGSDGPSPDLLNFQSAAPNYGCLSLLKKRRS- 178
E E +A+ +K QK K P+ SD P + +P+ GCL+ LK+ R+
Sbjct: 118 SEGEGHDASEVPRKQQKRKRAK-----PQRSDSPEEVDIQQSIGSPD-GCLTFLKQARAN 171
Query: 179 GSRPRAVAKRTPRVPVSYSYDKDNTEKYISPIKQGLKPRLGSIDDDVAHEIALALTEASQ 238
G++ A KRTPRVPV S+ +D+ E P K+ K +DDVAH +ALALT+AS+
Sbjct: 172 GTQRHATGKRTPRVPVQTSFMRDDREGSTPPNKRARK--QFDANDDVAHFLALALTDASR 229
Query: 239 RGGSLLVSQTPKRKR--GKPSPVQ---KGSRTCDVSEMNSSKPHGSEMDEDGRELSLGST 293
RGGS VS++P R+ SP++ K SRT + E E RE L
Sbjct: 230 RGGSPKVSESPNRRTELSDSSPIKSWGKMSRTRKSQSKHCGSSIFEEWMESSRERKL--- 286
Query: 294 DADNGYYSRDKIYLMDAETADTVEIQQKGKRYHSKKLKQEESVSNHLDDIKEACSGTEEG 353
D+D +D LMD E A +E +KGKR + K++K EE+ N DD EACS T+ G
Sbjct: 287 DSD-----KDTTLLMDMERAGEMEAPRKGKRVYKKRVKVEEAECNDSDDNGEACSATQ-G 340
Query: 354 QDMVVMKGKFAMEIADEKNSRSYSKGSKKRSKKVLFKRDE---SSEFDALQTLADLSL-M 409
+ K A+E + EK YS S K KRD+ S FDALQ LA+LS M
Sbjct: 341 LRSKSQRRKAAIEASREK----YSPRSPK-------KRDDKHTSGAFDALQALAELSASM 389
Query: 410 MPETTADTELSLQLKEEK-----------PEAVNESKL--KGN--------RSSTGVKDT 448
+P ++ELS QLKEE+ PEA + S K N + + V++
Sbjct: 390 LPANLMESELSAQLKEERTEYDMDEKSSTPEATSTSSHGEKANVEPDDSLLHAISSVENA 449
Query: 449 AIKTSKLGKDCTDDVSVIPESEEGNHLTNSGNRTKRQKFL----PIKLRMDAT------- 497
+ SK + + D +P + T+ R ++ K L P + + +
Sbjct: 450 NKRKSKPSRLVSTDCDDVPTGKLQPQ-TSGSLRKRKPKVLGDEAPAEFSQNKSINKKELP 508
Query: 498 ---EELKKFISKGKRSLSASQSKHGKLVKPPEHTSST-DHEKEGNNSASSTAHVRTANQV 553
+K + + +QSK K VK E ++ T D ++ G + +S V +
Sbjct: 509 QDENNMKSLVKTKRAGQVPAQSKQMKTVKALEESAITSDKKRPGMDIVASPKQVSDSGPT 568
Query: 554 NLPTKVRSRRKMNMQKLLIERDKMSSEDILKSSEDIFNDQNRTNSSFFDRAIKQKEQLSN 613
+L K +RRK ++QK L E+ K SSE K++ R++ S ++ + K++L+
Sbjct: 569 SLSQKPPNRRKKSLQKSLQEKAK-SSETTHKAA--------RSSRSLSEQELLLKDKLAT 619
Query: 614 CLSWYQVRVWCVSEWFYSTIDYPWFAKREFVEYLDHVGLSHVPRLTRVEWGVIRSSLGRP 673
LS+ R C+ EWFYS ID+PWF+K EFV+YL+HVGL H+PRLTR+EW VI+SSLGRP
Sbjct: 620 SLSFPFARRRCIFEWFYSAIDHPWFSKMEFVDYLNHVGLGHIPRLTRLEWSVIKSSLGRP 679
Query: 674 RRFSEQFLKEEKEKLNQYRESVRNHYSELRSGTKEGLPTDLARPLYVGQRIIAVHPRTRE 733
RRFSE+FL EE+EKL QYRESVR HY+ELR+G +EGLPTDLARPL VG R+IA+HP+TRE
Sbjct: 680 RRFSERFLHEEREKLKQYRESVRKHYTELRTGAREGLPTDLARPLAVGNRVIAIHPKTRE 739
Query: 734 ICDGSVLTVEHSRYRVQFDKRELGIEFVQDIDCMPLNPLENMPASLTRPNVAFGKFMDNF 793
I DG +LTV+H++ V FD +LG+E V DIDCMPLNPLE MP L R K +
Sbjct: 740 IHDGKILTVDHNKCNVLFD--DLGVELVMDIDCMPLNPLEYMPEGLRR---QIDKCLSMK 794
Query: 794 TELQMNGQPRERDIEGYMKFTPCENLETAYAPSHISPSTNYPIN--NLLQQ--HKGVSYT 849
E Q++G ++ + F PC LE ++S S N P+N +++ H VS
Sbjct: 795 KEAQLSGN---TNLGVSVLFPPC-GLE------NVSFSMNPPLNQGDMIAPILHGKVSSN 844
Query: 850 DS------EVHVGSTGQAKEEDVLALSHLRHALDKKVASALFCLRQRNTYQGNTCLTGLK 903
S ++ + +AKE ++ L+HALD+K
Sbjct: 845 TSSPRQTNHSYITTYNKAKEAEIQRAQALQHALDEK------------------------ 880
Query: 904 PMSGLGNLGGGLPNSFDHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGN 963
E P ++E+V+ S+++AQ MVD A++A SS+ KEG
Sbjct: 881 ------------------------EMEPEMLEIVKGSKTRAQAMVDAAIKAASSV-KEGE 915
Query: 964 GIER-IEEAMDYVN-NKLAGNDSGMPSIRSSTSADLVHSSRNSQDQQLETHTTNLLANSR 1021
+ I+EA++ V N+L +RSS H + +E H +N
Sbjct: 916 DVNTMIQEALELVGKNQL---------LRSSMVKHHEHV-----NGSIEHHHNPSPSNGS 961
Query: 1022 APDSTLN-NSSD--ENSAHIPLELIAHCVAALFMIQRCTERDFPPADVALVLDSAVTSLQ 1078
P + + NS D E +A +P ELI CVA MIQ CTER +PPADVA ++D+AVTSLQ
Sbjct: 962 EPVANNDLNSQDGSEKNAQMPSELITSCVATWLMIQMCTERQYPPADVAQLIDAAVTSLQ 1021
Query: 1079 PCCSQNLPVYAEIQKCMGIIRNQILALIPT 1108
P C QNLP+Y EIQ CMG I+ QI++L+PT
Sbjct: 1022 PRCPQNLPIYREIQTCMGRIKTQIMSLVPT 1051
>sp|Q6A331|ALY1_ARATH Protein ALWAYS EARLY 1 OS=Arabidopsis thaliana GN=ALY1 PE=2 SV=2
Length = 971
Score = 528 bits (1360), Expect = e-149, Method: Compositional matrix adjust.
Identities = 399/1154 (34%), Positives = 573/1154 (49%), Gaps = 228/1154 (19%)
Query: 1 MAPTRRSKSVNKRVAYTSEVASKKKAENADRSGKRKRKLSDMLGPQWSKEELERFYEAYR 60
MAPTR+SKSVNKR +T+E + +A ++ +RK+KL+D LGPQW+K EL RFY+AYR
Sbjct: 1 MAPTRKSKSVNKR--FTNEASPDINFGSASKTKQRKKKLADKLGPQWTKRELVRFYDAYR 58
Query: 61 KYGKDWKKIAAAVRN-RTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILAGSD 119
KY DWKK+AAAVRN R+ EMVE LF MNRAYLSLPEGTASV GLIAMMTDHY ++ GS+
Sbjct: 59 KYVGDWKKVAAAVRNNRSVEMVETLFCMNRAYLSLPEGTASVAGLIAMMTDHYSVMEGSE 118
Query: 120 GEQESDEATGSSQKSQKCAGGKFQNPPPKGSDGPSPDLLNFQSAAPNYGCLSLLKKRRS- 178
E E +A+ ++K K + P SD +++ S A GCLS LK+ ++
Sbjct: 119 SEGEDHDASEVTRKHL-----KRKRPQVLPSDF-REEVVPPHSVASVEGCLSFLKQTQAY 172
Query: 179 GSRPRAVAKRTPRVPVSYSYDKDNTEKYISPIKQGLKPRLGSIDDDVAHEIALALTEASQ 238
R RA KRTPR V+ ++++D+ E + P K+ K +L + DD AS+
Sbjct: 173 EKRQRATGKRTPRFLVAITHERDDIEDFSPPNKRA-KKQLDADDD------------ASR 219
Query: 239 RGGSL------LVSQTPKRKRGKPSPVQKGSRTCDVSEMNSSKPHGSEMDEDGRELSLGS 292
RGG L TP R R +T E P S + R+
Sbjct: 220 RGGGSPYRRKELSEITPTRLR----------KTSQAQEAQFKHPDSSMFENGVRDRWHKK 269
Query: 293 TDADNGYYSRDKIYLMDAETADTVEIQQKGKRYHSKKLKQEESVSNHLDDIKEACSGTEE 352
AD RD LMD E + QK K ++ EE+ N+ DD ++
Sbjct: 270 GAAD-----RDGALLMDMEGL----VTQK-----EKIVRVEEAEGNYSDD--------DD 307
Query: 353 GQDMVVMKGKFAMEIADEKNSRSYSKGSKKRSKKVLFKRDESSEFDALQTLADLSL-MMP 411
G AL+TLA++S + P
Sbjct: 308 G-------------------------------------------LGALKTLAEMSASLAP 324
Query: 412 ETTADTELSLQLKEEKP-----------EAVNESKLKGNRSSTGVKDTAIKTSKLGKDCT 460
++E S +EE+ E V+ S + G++D + +
Sbjct: 325 AGLLESESSPHWEEERKTNNVDKKSNTLETVSTSHHREKAKQAGLEDNLLHA--ISAPDK 382
Query: 461 DDVSVIPESEEGNHLT----NSGNRTKRQKF--LPIKLRMDATEELKKF------ISKGK 508
+PES +GN ++ + +R ++ KF L + ++T++ + + K
Sbjct: 383 RKPKSVPESVDGNVVSIEELRTSSRKRKPKFQVLDVVAPKESTQDKSLYTKESAEVDSLK 442
Query: 509 RSLSASQSKHG--KLVKPPEHT----SSTDHEKEGNNSASSTAHVRTANQVNLPTKVRSR 562
+ A +S G K +K + T S++D + G ++ V + LP K +R
Sbjct: 443 TPVKARRSSQGPAKQLKTAKTTVESSSASDKKITGPDAVVPATQVSASGPETLPQKPPNR 502
Query: 563 RKMNMQKLLIERDKMSSEDILKSSEDIFNDQNRTNSSFFDRAIKQKEQLSNCLSWYQVRV 622
RK++++K L ER K S + +D+ R+ + + Q E+LSNCLS+ VR
Sbjct: 503 RKISLKKSLQERAK---------SLETTHDKPRSFKKLSEHELLQ-EKLSNCLSYPLVRR 552
Query: 623 WCVSEWFYSTIDYPWFAKREFVEYLDHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFLK 682
WC+ EWFYS IDYPWFAK EF +YL+HVGL H PRLTRVEW VI+SSLGRPRR S++FL+
Sbjct: 553 WCIYEWFYSAIDYPWFAKMEFTDYLNHVGLGHAPRLTRVEWSVIKSSLGRPRRLSQRFLQ 612
Query: 683 EEKEKLNQYRESVRNHYSELRSGTKEGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTV 742
+E++KL +YRESVR HY+ELR L TDLARPL VG R+IA+HP+TREI DG +LTV
Sbjct: 613 DERDKLQEYRESVRKHYTELRGCATGVLHTDLARPLSVGNRVIAIHPKTREIRDGKILTV 672
Query: 743 EHSRYRVQFDKRELGIEFVQDIDCMPLNPLENMPASLTRPNVAFGKFMDNFTELQMNGQP 802
+H++ V FD ELG+E V DIDCMPLNPLE MP L R K + E ++N P
Sbjct: 673 DHNKCNVLFD--ELGVELVMDIDCMPLNPLEYMPEGLRR---QIDKCLAICKEARLNRHP 727
Query: 803 RERDIEGYMKFTP--CENLETAYAPSHISPSTNYPINNLLQQHKGVS--YTDSEVHVGST 858
+ + F+P EN+ + P P+ I + K ++ TD + + S
Sbjct: 728 SS---DASVLFSPSVLENVNFSMNP---PPAKQDDIREPVLYGKVIATNTTDQSIVINSK 781
Query: 859 GQAKE-EDVLALSHLRHALDKKVASALFCLRQRNTYQGNTCLTGLKPMSGLGNLGGGLPN 917
E + LAL H A + +
Sbjct: 782 VTGTEIQRTLALQHTSDAQEME-------------------------------------- 803
Query: 918 SFDHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNN 977
PE V+E S+S AQ MVD A++A SS + + + +A+ +
Sbjct: 804 ---------PEMIEIVIE----SKSIAQAMVDAAIKAASSGKNNEDSENMVHQALSSIGE 850
Query: 978 KLAGNDSGMPSIRSS--TSADLVHSSRNSQDQQLETHTTNLLANSRAPDSTLNNSSDENS 1035
++S +P I+ T+ L H S N+ E + ++ S +N
Sbjct: 851 HQPLDNSIVPGIKHQEYTNGSLDHHSLNTA----EPMSNGFIS---------QEGSGKNK 897
Query: 1036 AHIPLELIAHCVAALFMIQRCTERDFPPADVALVLDSAVTSLQPCCSQNLPVYAEIQKCM 1095
+P ELI CVA+ M+Q +++ +PPADVA ++D+ V LQP C QN+P+Y EIQ CM
Sbjct: 898 TPMPSELITSCVASWLMMQMISKKQYPPADVAQLMDTVVNDLQPRCPQNMPIYREIQTCM 957
Query: 1096 GIIRNQILALIPTS 1109
G+I+ QI+AL+ TS
Sbjct: 958 GLIKTQIMALVRTS 971
>sp|Q5RHQ8|LIN9_DANRE Protein lin-9 homolog OS=Danio rerio GN=lin9 PE=2 SV=1
Length = 543
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 96/200 (48%), Gaps = 19/200 (9%)
Query: 593 QNRTNSSFFDRAIKQK--EQLSNCLSWYQVRVWCVSEWFYSTIDYPWF-AKREFVEYLDH 649
Q TN + D+ + QK +L N L + WC+ EWFYS ID P F +F L
Sbjct: 87 QKLTNVATPDKRVSQKIGLRLRNLLKLPKAHKWCIYEWFYSNIDRPLFEGDNDFCLCLKE 146
Query: 650 VGLSHVPR-LTRVEWGVIRSSLGRPRRFSEQFLKEEKEKLNQYRESVRNHYSELRSGTK- 707
+ R LTRVEWG IR +G+PRR S F EE+ L Q R+ +R + R T
Sbjct: 147 SFPNLKTRKLTRVEWGTIRRLMGKPRRCSSAFFAEERMALKQKRQKMR--LLQQRKITDM 204
Query: 708 ---EGLPTDLARPLYVGQRIIAVHPRTREICDG------SVLTVEHSRYRVQFDKRELGI 758
+ LP ++ PL +G ++ A R R + DG + + YRV FD+ LG
Sbjct: 205 SLCKDLPDEIPLPLVIGTKVTA---RLRGVHDGLFTGQIDAVDTSAATYRVTFDRNGLGT 261
Query: 759 EFVQDIDCMPLNPLENMPAS 778
V D + + P E MP S
Sbjct: 262 HTVPDYEVLSNEPHETMPIS 281
>sp|Q8C735|LIN9_MOUSE Protein lin-9 homolog OS=Mus musculus GN=Lin9 PE=2 SV=2
Length = 542
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 91/189 (48%), Gaps = 19/189 (10%)
Query: 610 QLSNCLSWYQVRVWCVSEWFYSTIDYPWF-AKREFVEYLDHVGLSHVPR-LTRVEWGVIR 667
+L N L + WC+ EWFYS ID P F +F L + R LTRVEWG IR
Sbjct: 108 RLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIR 167
Query: 668 SSLGRPRRFSEQFLKEEKEKLNQYRESVRNHYSELRSGTKE--GLPTDLARPLYVGQRII 725
+G+PRR S F +EE+ L Q R+ +R + + LP ++ PL +G ++
Sbjct: 168 RLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVT 227
Query: 726 AVHPRTREICDG------SVLTVEHSRYRVQFDKRELGIEFVQDIDCMPLNPLENMPASL 779
A R R I DG + ++ YRV FD+ LG + D + + P E MP S
Sbjct: 228 A---RLRGIHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIS- 283
Query: 780 TRPNVAFGK 788
AFG+
Sbjct: 284 -----AFGQ 287
>sp|Q4R8N2|LIN9_MACFA Protein lin-9 homolog OS=Macaca fascicularis GN=LIN9 PE=2 SV=1
Length = 542
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 91/189 (48%), Gaps = 19/189 (10%)
Query: 610 QLSNCLSWYQVRVWCVSEWFYSTIDYPWF-AKREFVEYLDHVGLSHVPR-LTRVEWGVIR 667
+L N L + WC+ EWFYS ID P F +F L + R LTRVEWG IR
Sbjct: 108 RLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIR 167
Query: 668 SSLGRPRRFSEQFLKEEKEKLNQYRESVRNHYSELRSGTKE--GLPTDLARPLYVGQRII 725
+G+PRR S F +EE+ L Q R+ +R + + LP ++ PL +G ++
Sbjct: 168 RLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVT 227
Query: 726 AVHPRTREICDG------SVLTVEHSRYRVQFDKRELGIEFVQDIDCMPLNPLENMPASL 779
A R R + DG + ++ YRV FD+ LG + D + + P E MP +
Sbjct: 228 A---RLRGVHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIA- 283
Query: 780 TRPNVAFGK 788
AFG+
Sbjct: 284 -----AFGQ 287
>sp|Q5TKA1|LIN9_HUMAN Protein lin-9 homolog OS=Homo sapiens GN=LIN9 PE=1 SV=1
Length = 542
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 91/189 (48%), Gaps = 19/189 (10%)
Query: 610 QLSNCLSWYQVRVWCVSEWFYSTIDYPWF-AKREFVEYLDHVGLSHVPR-LTRVEWGVIR 667
+L N L + WC+ EWFYS ID P F +F L + R LTRVEWG IR
Sbjct: 108 RLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIR 167
Query: 668 SSLGRPRRFSEQFLKEEKEKLNQYRESVRNHYSELRSGTKE--GLPTDLARPLYVGQRII 725
+G+PRR S F +EE+ L Q R+ +R + + LP ++ PL +G ++
Sbjct: 168 RLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVT 227
Query: 726 AVHPRTREICDG------SVLTVEHSRYRVQFDKRELGIEFVQDIDCMPLNPLENMPASL 779
A R R + DG + ++ YRV FD+ LG + D + + P E MP +
Sbjct: 228 A---RLRGVHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIA- 283
Query: 780 TRPNVAFGK 788
AFG+
Sbjct: 284 -----AFGQ 287
>sp|P30630|LIN9_CAEEL Protein lin-9 OS=Caenorhabditis elegans GN=lin-9 PE=1 SV=3
Length = 644
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 590 FNDQNRTNSSFFDRAIKQKEQLSNCLSWYQVRVWCVSEWFYSTIDYPWFAKREFVEYLDH 649
+ +Q + S F RA +K L N L + + R W + E+FYS ID F + +
Sbjct: 189 YKNQTSEDVSTFMRANIKK--LYNLLRYKKARQWVMCEFFYSAIDEQIFKEENEFATIIR 246
Query: 650 VGLSHVPR--LTRVEWGVIRSSLGRPRRFSEQFLKEEKEKLNQYRESVRNHY--SELR-- 703
++ LTR+EW IR LG+PRR S+ F +EE+ L + R +R+ Y S L
Sbjct: 247 ESFPNLKNWNLTRIEWRSIRKLLGKPRRCSKVFFEEERMYLEEKRMKIRSVYEGSYLNDP 306
Query: 704 SGTKEGLPTDLARPLYVGQRIIAVHPRTRE----ICDGSVLTVEHSRYRVQFDKRELGIE 759
S + LP L RP+ VG R+ A R R I G + V +R+ FDK ++
Sbjct: 307 SIDLKDLPAKLPRPMVVGNRVFA---RIRNPYDGIYSGIIDAVIPKGFRIIFDKPDIPPT 363
Query: 760 FVQDIDCM 767
V D + +
Sbjct: 364 LVSDTEIL 371
>sp|P32591|SWI3_YEAST SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1
Length = 825
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 35 RKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAE 79
+K K+ + + WSKE+L++ + +++G DW K+A V N++ E
Sbjct: 515 KKVKILEQIDENWSKEDLQKLLKGIQEFGADWYKVAKNVGNKSPE 559
>sp|Q54K19|MYBD_DICDI Myb-like protein D OS=Dictyostelium discoideum GN=mybD PE=3 SV=1
Length = 595
Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 23 KKKAENADRSGKRKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVE 82
K+K+E+ ++ +K+ + + W++EE E+ + Y KYGK WK I + ++T E V+
Sbjct: 422 KRKSEDDNQDDGKKKHRKNAI---WTQEEDEKMAQLYNKYGKSWKAIHSHFDDKTREQVQ 478
Query: 83 A 83
+
Sbjct: 479 S 479
>sp|Q6P116|RCOR2_DANRE REST corepressor 2 OS=Danio rerio GN=rcor2 PE=2 SV=1
Length = 536
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 35 RKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSL 94
R R+ + + +W+ EE +A R+YGKD+ IA + N+T V + F R +L
Sbjct: 321 RPREPNQKINSRWTTEEQLLAVQAVRRYGKDFAAIADVIGNKTVAQVSSFFVSYRRRFNL 380
Query: 95 PE 96
E
Sbjct: 381 EE 382
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 46 QWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMV 81
+W++EE RF EA R YG+ W+KI V +TA +
Sbjct: 26 RWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQI 61
>sp|Q6NRZ0|RCOR2_XENLA REST corepressor 2 OS=Xenopus laevis GN=rcor2 PE=2 SV=1
Length = 503
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 35 RKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSL 94
R +L+ L +W+ +E +A RKYGKD++ I+ + N+T V+ F R +L
Sbjct: 320 RPPELNIKLNARWTTDEQLLAVQAVRKYGKDFQAISEVLGNKTPSQVKTFFISYRRRFNL 379
Query: 95 PEGTASVVGLIAMMTDHYGILAGSDGEQESDEATGSSQKSQKCAG 139
E +L + EQE S+ S K +G
Sbjct: 380 EE-----------------VLQEWEAEQEPSPPPASTDMSNKTSG 407
>sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1
SV=1
Length = 469
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 35 RKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRT 77
++ ++S+ P+WS +E+ EA YG DWKK+A+ V RT
Sbjct: 216 KRVEISEESKPEWSDKEILLLLEAVMHYGDDWKKVASHVIGRT 258
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 46 QWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMV 81
+W+++E ERF EA R YG+ W++I + +TA +
Sbjct: 26 RWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQI 61
>sp|Q55DP9|MYBP_DICDI Myb-like protein P OS=Dictyostelium discoideum GN=mybP PE=3 SV=1
Length = 1448
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 47 WSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSL 94
W+++E ++F + Y +Y K + KIA+ NRT E + + N+ L+L
Sbjct: 1080 WTEDEKQKFVKKYLQYPKKFSKIASFFDNRTTEDMIVFYYNNKKTLNL 1127
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 47 WSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEA 83
W+KEE F EAY+ Y KD KKI V+ +T V +
Sbjct: 153 WTKEEERLFVEAYKLYDKDNKKIQEHVKTKTILQVRS 189
>sp|Q9P2K3|RCOR3_HUMAN REST corepressor 3 OS=Homo sapiens GN=RCOR3 PE=1 SV=2
Length = 495
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 47 WSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPE 96
W+ EE + RKYGKD++ IA + N+T V+ F R +L E
Sbjct: 290 WTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEE 339
>sp|Q5TZ66|SN25A_DANRE Synaptosomal-associated protein 25-A OS=Danio rerio GN=snap25a PE=2
SV=1
Length = 204
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 920 DHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKL 979
D A ++ ES ++++VE S+ D ++ L L+++G +ERIEE MD +N +
Sbjct: 19 DQLADESLESTRRMLQLVEESK-------DAGIRTLVMLDEQGEQLERIEEGMDQINKDM 71
>sp|P36977|SN25A_CARAU Synaptosomal-associated protein 25-A OS=Carassius auratus
GN=snap25a PE=2 SV=1
Length = 204
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 920 DHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKL 979
D A ++ ES ++++VE S+ D ++ L L+++G +ERIEE MD +N +
Sbjct: 19 DQLADESLESTRRMLQLVEESK-------DAGIRTLVMLDEQGEQLERIEEGMDQINKDM 71
>sp|Q5NVG5|SNP25_PONAB Synaptosomal-associated protein 25 OS=Pongo abelii GN=SNAP25 PE=2
SV=1
Length = 206
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 920 DHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKL 979
D A ++ ES ++++VE S+ D ++ L L+++G +ERIEE MD +N +
Sbjct: 19 DQLADESLESTRRMLQLVEESK-------DAGIRTLVMLDEQGEQLERIEEGMDQINKDM 71
>sp|P60881|SNP25_RAT Synaptosomal-associated protein 25 OS=Rattus norvegicus GN=Snap25
PE=1 SV=1
Length = 206
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 920 DHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKL 979
D A ++ ES ++++VE S+ D ++ L L+++G +ERIEE MD +N +
Sbjct: 19 DQLADESLESTRRMLQLVEESK-------DAGIRTLVMLDEQGEQLERIEEGMDQINKDM 71
>sp|Q5R1X1|SNP25_PANTR Synaptosomal-associated protein 25 OS=Pan troglodytes GN=SNAP25
PE=2 SV=1
Length = 206
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 920 DHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKL 979
D A ++ ES ++++VE S+ D ++ L L+++G +ERIEE MD +N +
Sbjct: 19 DQLADESLESTRRMLQLVEESK-------DAGIRTLVMLDEQGEQLERIEEGMDQINKDM 71
>sp|P60879|SNP25_MOUSE Synaptosomal-associated protein 25 OS=Mus musculus GN=Snap25 PE=1
SV=1
Length = 206
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 920 DHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKL 979
D A ++ ES ++++VE S+ D ++ L L+++G +ERIEE MD +N +
Sbjct: 19 DQLADESLESTRRMLQLVEESK-------DAGIRTLVMLDEQGEQLERIEEGMDQINKDM 71
>sp|P60877|SNP25_MACMU Synaptosomal-associated protein 25 OS=Macaca mulatta GN=SNAP25 PE=2
SV=1
Length = 206
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 920 DHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKL 979
D A ++ ES ++++VE S+ D ++ L L+++G +ERIEE MD +N +
Sbjct: 19 DQLADESLESTRRMLQLVEESK-------DAGIRTLVMLDEQGEQLERIEEGMDQINKDM 71
>sp|P60880|SNP25_HUMAN Synaptosomal-associated protein 25 OS=Homo sapiens GN=SNAP25 PE=1
SV=1
Length = 206
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 920 DHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKL 979
D A ++ ES ++++VE S+ D ++ L L+++G +ERIEE MD +N +
Sbjct: 19 DQLADESLESTRRMLQLVEESK-------DAGIRTLVMLDEQGEQLERIEEGMDQINKDM 71
>sp|P60878|SNP25_CHICK Synaptosomal-associated protein 25 OS=Gallus gallus GN=SNAP25 PE=1
SV=1
Length = 206
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 920 DHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKL 979
D A ++ ES ++++VE S+ D ++ L L+++G +ERIEE MD +N +
Sbjct: 19 DQLADESLESTRRMLQLVEESK-------DAGIRTLVMLDEQGEQLERIEEGMDQINKDM 71
>sp|Q17QQ3|SNP25_BOVIN Synaptosomal-associated protein 25 OS=Bos taurus GN=SNAP25 PE=1
SV=1
Length = 206
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 920 DHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKL 979
D A ++ ES ++++VE S+ D ++ L L+++G +ERIEE MD +N +
Sbjct: 19 DQLADESLESTRRMLQLVEESK-------DAGIRTLVMLDEQGEQLERIEEGMDQINKDM 71
>sp|Q5FWT8|RCOR2_RAT REST corepressor 2 OS=Rattus norvegicus GN=Rcor2 PE=2 SV=1
Length = 523
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 46 QWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPE 96
+W+ +E +A R+YGKD+ IA + N+T V+ F R +L E
Sbjct: 331 RWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRRRFNLEE 381
>sp|Q8IZ40|RCOR2_HUMAN REST corepressor 2 OS=Homo sapiens GN=RCOR2 PE=1 SV=2
Length = 523
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 46 QWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPE 96
+W+ +E +A R+YGKD+ IA + N+T V+ F R +L E
Sbjct: 331 RWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRRRFNLEE 381
>sp|Q8C796|RCOR2_MOUSE REST corepressor 2 OS=Mus musculus GN=Rcor2 PE=2 SV=1
Length = 523
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 46 QWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPE 96
+W+ +E +A R+YGKD+ IA + N+T V+ F R +L E
Sbjct: 331 RWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRRRFNLEE 381
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 46 QWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEA 83
+W+ EE E F + KYG+ W KIA + +RT V++
Sbjct: 121 KWTSEEKELFEQGLVKYGRRWTKIAKLIGSRTVLQVKS 158
>sp|A8N4R7|MTND1_COPC7 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1
OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC
MYA-4618 / FGSC 9003) GN=ADI1-1 PE=3 SV=1
Length = 178
Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 284 DGRELSLGSTDADNGYYSRDKIYLMDAETADTVEIQQKGKRYHSKKLKQEESVSNHLD-- 341
DG L + + GY +RD I + A D+ E +K K + S+ + ++E + +D
Sbjct: 41 DGYLPKLNAVAEERGYKNRDFINVSKAGLGDSYE--EKLKNFFSEHMHEDEEIRYVVDGS 98
Query: 342 ---DIKEACS------GTEEGQDMVVMKGKFAMEIADEKNSRSYSKGSKKRSKKVLFKRD 392
D++E+ S G E G +V+ G + DE N + + K + + R
Sbjct: 99 GFFDVRESPSDEWIRIGVEPGDLLVIPAGIYHRFTLDENNYIKAIRLFQDEPKWIPYNRS 158
Query: 393 ESSEFD 398
E +E +
Sbjct: 159 EETEVN 164
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 46 QWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEA 83
+W+ EE E F + K+G+ W KIA +++RT V++
Sbjct: 117 KWTVEEKELFEQGLAKFGRRWTKIATLLKSRTVLQVKS 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,985,092
Number of Sequences: 539616
Number of extensions: 17979554
Number of successful extensions: 46761
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 229
Number of HSP's that attempted gapping in prelim test: 46311
Number of HSP's gapped (non-prelim): 804
length of query: 1110
length of database: 191,569,459
effective HSP length: 128
effective length of query: 982
effective length of database: 122,498,611
effective search space: 120293636002
effective search space used: 120293636002
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)