Query 001272
Match_columns 1110
No_of_seqs 136 out of 149
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 20:26:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1019 Retinoblastoma pathway 100.0 1E-84 2.2E-89 753.6 13.5 787 1-973 1-828 (837)
2 PF06584 DIRP: DIRP; InterPro 100.0 2E-38 4.2E-43 300.0 10.0 102 629-730 1-109 (109)
3 KOG1019 Retinoblastoma pathway 100.0 1.5E-31 3.4E-36 312.2 2.9 646 182-879 1-696 (837)
4 TIGR01557 myb_SHAQKYF myb-like 99.0 4E-10 8.6E-15 97.1 5.9 50 43-94 2-57 (57)
5 PF00249 Myb_DNA-binding: Myb- 98.9 4.5E-09 9.8E-14 85.9 5.9 45 44-88 1-47 (48)
6 smart00717 SANT SANT SWI3, AD 98.3 1E-06 2.2E-11 68.8 5.6 44 44-87 1-45 (49)
7 cd00167 SANT 'SWI3, ADA2, N-Co 98.3 1.1E-06 2.4E-11 67.8 5.1 42 46-87 1-43 (45)
8 PF13921 Myb_DNA-bind_6: Myb-l 97.9 1.3E-05 2.9E-10 67.7 5.0 41 47-87 1-41 (60)
9 COG5259 RSC8 RSC chromatin rem 97.5 8.5E-05 1.8E-09 85.7 4.6 45 45-95 280-324 (531)
10 KOG1279 Chromatin remodeling f 97.0 0.00077 1.7E-08 79.4 4.8 56 41-102 250-305 (506)
11 PLN03212 Transcription repress 96.7 0.0017 3.7E-08 70.7 4.8 44 43-86 77-120 (249)
12 KOG0457 Histone acetyltransfer 96.1 0.0077 1.7E-07 69.8 5.8 59 40-100 68-127 (438)
13 PLN03091 hypothetical protein; 95.8 0.012 2.6E-07 68.5 5.3 45 43-87 66-110 (459)
14 PLN03212 Transcription repress 95.2 0.027 5.9E-07 61.6 5.3 45 42-86 23-69 (249)
15 PLN03091 hypothetical protein; 94.7 0.035 7.6E-07 64.8 4.8 42 44-85 14-57 (459)
16 KOG0724 Zuotin and related mol 93.1 0.045 9.8E-07 60.7 1.8 52 43-96 52-103 (335)
17 KOG4468 Polycomb-group transcr 92.8 0.088 1.9E-06 63.2 3.6 47 45-91 89-150 (782)
18 KOG4329 DNA-binding protein [G 92.6 0.56 1.2E-05 54.2 9.5 50 46-99 279-329 (445)
19 COG5118 BDP1 Transcription ini 92.4 0.16 3.4E-06 58.6 4.8 42 45-86 366-407 (507)
20 smart00333 TUDOR Tudor domain. 91.8 0.37 7.9E-06 40.3 5.2 51 717-770 2-54 (57)
21 COG5114 Histone acetyltransfer 91.7 0.23 4.9E-06 56.4 4.9 50 41-92 60-110 (432)
22 PF07039 DUF1325: SGF29 tudor- 88.5 0.68 1.5E-05 46.4 4.9 52 717-768 71-127 (130)
23 KOG0048 Transcription factor, 87.9 0.75 1.6E-05 49.6 5.1 51 44-94 62-114 (238)
24 PF15057 DUF4537: Domain of un 84.7 1.5 3.3E-05 43.6 4.9 48 721-770 1-49 (124)
25 KOG1194 Predicted DNA-binding 82.6 1.7 3.7E-05 51.5 5.0 65 43-117 186-250 (534)
26 smart00743 Agenet Tudor-like d 82.4 3.1 6.7E-05 35.6 5.3 37 717-753 2-39 (61)
27 PF15057 DUF4537: Domain of un 82.2 1.4 3.1E-05 43.7 3.7 53 715-769 53-112 (124)
28 PF09465 LBR_tudor: Lamin-B re 81.5 4.7 0.0001 36.0 6.1 38 716-753 4-43 (55)
29 KOG0049 Transcription factor, 78.6 2.3 5E-05 52.3 4.4 48 43-90 359-407 (939)
30 PF13837 Myb_DNA-bind_4: Myb/S 76.1 3.4 7.3E-05 37.2 3.8 53 45-97 2-73 (90)
31 KOG0048 Transcription factor, 74.4 3.8 8.3E-05 44.4 4.3 43 44-86 9-53 (238)
32 KOG3554 Histone deacetylase co 73.6 3.7 7.9E-05 49.0 4.2 45 46-90 287-332 (693)
33 KOG4167 Predicted DNA-binding 73.5 6.6 0.00014 49.1 6.4 85 46-146 621-712 (907)
34 PLN03162 golden-2 like transcr 69.8 11 0.00024 44.1 6.8 50 44-93 237-291 (526)
35 cd04508 TUDOR Tudor domains ar 68.3 9.2 0.0002 30.9 4.3 41 721-763 1-43 (48)
36 KOG0049 Transcription factor, 67.1 5.5 0.00012 49.2 3.9 51 44-94 412-466 (939)
37 PF06003 SMN: Survival motor n 63.5 14 0.0003 41.2 5.9 55 716-772 67-124 (264)
38 PLN03142 Probable chromatin-re 60.8 9 0.0002 49.9 4.4 55 35-92 815-870 (1033)
39 PF11717 Tudor-knot: RNA bindi 58.7 12 0.00025 32.4 3.4 34 718-752 1-38 (55)
40 KOG0051 RNA polymerase I termi 53.1 14 0.0003 45.6 4.1 49 35-84 375-423 (607)
41 PF09038 53-BP1_Tudor: Tumour 50.6 31 0.00067 35.2 5.3 45 720-767 5-51 (122)
42 smart00561 MBT Present in Dros 49.1 63 0.0014 31.2 6.9 44 712-755 22-66 (96)
43 PF13873 Myb_DNA-bind_5: Myb/S 46.1 44 0.00096 29.9 5.1 48 44-91 2-71 (78)
44 KOG3038 Histone acetyltransfer 45.3 20 0.00043 40.4 3.4 37 716-752 197-236 (264)
45 KOG2009 Transcription initiati 42.6 16 0.00035 44.9 2.4 45 43-87 408-452 (584)
46 KOG4485 Uncharacterized conser 35.9 18 0.00038 43.6 1.3 40 652-691 256-307 (724)
47 KOG0050 mRNA splicing protein 34.1 44 0.00096 41.0 4.1 40 46-86 61-100 (617)
48 cd08780 Death_TRADD Death Doma 33.9 34 0.00073 33.4 2.6 24 48-74 1-24 (90)
49 PF10591 SPARC_Ca_bdg: Secrete 30.7 21 0.00045 35.1 0.7 36 647-682 60-95 (113)
50 KOG1583 UDP-N-acetylglucosamin 28.9 33 0.00073 39.4 1.9 40 58-120 186-228 (330)
51 cd04788 HTH_NolA-AlbR Helix-Tu 28.8 1.1E+02 0.0024 29.0 5.0 51 1045-1105 42-92 (96)
52 PF12776 Myb_DNA-bind_3: Myb/S 26.9 1.7E+02 0.0036 26.8 5.8 44 46-89 1-62 (96)
53 KOG3841 TEF-1 and related tran 26.0 80 0.0017 37.6 4.3 43 43-85 75-138 (455)
54 KOG3026 Splicing factor SPF30 25.6 59 0.0013 36.6 3.0 39 717-755 90-130 (262)
55 cd00592 HTH_MerR-like Helix-Tu 25.5 1.4E+02 0.0031 27.8 5.1 56 1045-1105 41-96 (100)
56 CHL00141 rpl24 ribosomal prote 23.2 1.4E+02 0.0029 28.5 4.5 38 714-752 5-42 (83)
57 KOG0050 mRNA splicing protein 22.5 93 0.002 38.4 4.1 45 42-86 5-50 (617)
58 KOG0888 Nucleoside diphosphate 22.3 1.9E+02 0.0041 30.7 5.8 81 36-122 33-128 (156)
59 PF05641 Agenet: Agenet domain 21.2 2.3E+02 0.005 25.4 5.4 36 718-753 1-40 (68)
60 KOG0724 Zuotin and related mol 21.2 53 0.0012 37.0 1.7 46 41-88 161-208 (335)
61 smart00426 TEA TEA domain. 21.1 1.3E+02 0.0028 28.3 3.8 24 44-67 3-27 (68)
62 PRK05886 yajC preprotein trans 20.8 1.6E+02 0.0035 29.6 4.7 41 717-762 38-86 (109)
63 PF08281 Sigma70_r4_2: Sigma-7 20.6 1.9E+02 0.0042 24.0 4.5 36 53-89 16-51 (54)
No 1
>KOG1019 consensus Retinoblastoma pathway protein LIN-9/chromatin-associated protein Aly [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=1e-84 Score=753.57 Aligned_cols=787 Identities=35% Similarity=0.437 Sum_probs=646.6
Q ss_pred CCCCc--CccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHHHHHHHcCCChHHHHHHHh-cch
Q 001272 1 MAPTR--RSKSVNKRVAYTSEVASKKKAENADRSGKRKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVR-NRT 77 (1110)
Q Consensus 1 Map~R--ksrsvnK~~~~~~e~~~~~~~~~~~k~k~rk~klsd~lg~rWs~eEh~rFlea~r~yGk~WkkVa~~V~-tRT 77 (1110)
|||.| |++.++|+++ |+++|+.+....+|.++||++++|+|+++|+..|+++||++|++||+.|+++++.++ +|+
T Consensus 1 ~a~vRkrk~~~~~~~~~--ndtsp~~~~~~~sKt~qR~~~~~d~l~pq~s~~~~e~~~k~~~k~~~~~r~~~~~~~~~R~ 78 (837)
T KOG1019|consen 1 MAAVRKRKSKSVDKRFT--NDTSPRYDSGSTSKTPQRKRKLADKLSPQWSKLELERFYKAYRKRGREWRKSPAAVRSTRS 78 (837)
T ss_pred CCccccccccccccccc--ccccccccccccccCCCCCcccccccCcchhHhhhhhhhhcccccccccccccccccchhh
Confidence 89999 8889999999 999999999999999999999999999999999999999999999999999999999 599
Q ss_pred HHHHHHHHhhhhhhcccCcccccccceeeeeeccccccCCCCCCccccccccCccccccccCCcc-CCCCCCCCCCCCCc
Q 001272 78 AEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILAGSDGEQESDEATGSSQKSQKCAGGKF-QNPPPKGSDGPSPD 156 (1110)
Q Consensus 78 ~~qVrsly~~~k~~l~lpeg~as~~gliAmmtdhy~~l~~s~Se~es~~~~~~~~k~~kr~r~~~-~~~~~~~~~~~~~~ 156 (1110)
+.||+.||.||+||+++|+|+++++|+|+||||||+++.||.++.|++++++..++.+|++|+++ +.+. ....
T Consensus 79 s~~vell~~~n~Ay~S~~~~~~si~G~~~~~t~~ys~~~gs~~~~e~~d~sE~e~k~~k~kr~~va~~~D------~~eg 152 (837)
T KOG1019|consen 79 SNMVELLKAMNKAYLSLSEGTESILGLIEPMTDHYSVLEGSGPEGESNDASEKERKAIKRKRAKVAKRSD------FDEG 152 (837)
T ss_pred hhHHHHHHhhhcccccccccccccccccccCCCccchhcCCCCCCccchhhhhhHHHHHHHhhccccccc------cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988 4443 2222
Q ss_pred ccccccCCCCCCccccccccccCCCCcccccCCCccccccccccCCcccccCccccCCCCCCCCCChhhHHHHHHHHHHH
Q 001272 157 LLNFQSAAPNYGCLSLLKKRRSGSRPRAVAKRTPRVPVSYSYDKDNTEKYISPIKQGLKPRLGSIDDDVAHEIALALTEA 236 (1110)
Q Consensus 157 ~~~~~~~~S~~G~ls~lKkrr~g~~~~avgKRTPRvpvs~~~~kd~~e~~i~p~~r~~K~~~da~ddd~~h~iAlAltEa 236 (1110)
+---..+.|..||+++||+.++ -++.++++|++++-..+..+|.+.+..|+.|..++. +..| ++
T Consensus 153 ~~l~n~~~s~~~~~~~~~q~~~---~~~~k~~~~~~~~~~~~~aed~~~~s~~n~r~~~ql-~r~~------------~k 216 (837)
T KOG1019|consen 153 LRLTNEAKSLSGHLWFFKQFRT---SQADKPTLKQFLVYKNQTAEDAPTLSRPNIRALWQL-DRRD------------GK 216 (837)
T ss_pred ccchhhhccccchHHHHHHHHh---hhhccccchhhhHHHhhhhhhhhhccchhhhhhhhh-hccc------------cc
Confidence 2334456788999999999997 569999999999999999999999988888887763 3333 67
Q ss_pred hhcCCCCCccCCccCcCCC-C-CCCCCCCcccccccccCCCCCCCCccccccccCCCCCCCCCCcccccchhhhccccch
Q 001272 237 SQRGGSLLVSQTPKRKRGK-P-SPVQKGSRTCDVSEMNSSKPHGSEMDEDGRELSLGSTDADNGYYSRDKIYLMDAETAD 314 (1110)
Q Consensus 237 sqRGgSp~vS~tP~Rr~~~-~-Sp~~~~~k~~~~Se~~ssK~hgs~~de~~~E~SlgS~~a~~g~y~rd~s~lm~~eg~~ 314 (1110)
+.||+. |.++.+. . +|.+.+.++-+ +.--.+|+.+++|.++|++ +....-|.-.++++.||+|++..
T Consensus 217 sRr~~~------~~f~~e~~E~~~~~~~~~~~~-sr~~~~~~~nss~~~~~~~----~i~~~l~~~~~~Ss~L~~~er~~ 285 (837)
T KOG1019|consen 217 SRRGSA------PFFREELSEQIPKRERIKTSQ-SREKFSKLKNSSMLRIGPR----SIPKPLGKPDRVSSLLMDMERMG 285 (837)
T ss_pred chhccc------hhhHhHHhhhhHHHHhhhhhh-hhcccCCCCchHHhhhhhh----hcccccccCccchhhhhchhhcc
Confidence 888887 7777765 2 46666666633 3334567789999999999 67778889999999999999985
Q ss_pred hHHHHhhccccccccchhhhcccCCcchhhhhccCccccchhhhhcccchhhhcccccccCCcccccccccccccCCCcc
Q 001272 315 TVEIQQKGKRYHSKKLKQEESVSNHLDDIKEACSGTEEGQDMVVMKGKFAMEIADEKNSRSYSKGSKKRSKKVLFKRDES 394 (1110)
Q Consensus 315 ~v~~~~K~k~~~~kk~kve~~~~~~~dD~~EAcSgteeg~~~~~~k~~~e~ev~~~k~~~~s~~~~~kRskklf~~d~e~ 394 (1110)
.++. +-+++|.+.+++++|
T Consensus 286 ~~~~---------kv~~~e~ae~sy~~d---------------------------------------------------- 304 (837)
T KOG1019|consen 286 LEEA---------KVVKDELAEGSYLDD---------------------------------------------------- 304 (837)
T ss_pred cccc---------eeEeechhhhhhhhh----------------------------------------------------
Confidence 5543 224566666666654
Q ss_pred hhhhHHHHHHHhh-ccCCCccccccccccccccCc------cccccccccCCCCCCCCccc-------------hhhccc
Q 001272 395 SEFDALQTLADLS-LMMPETTADTELSLQLKEEKP------EAVNESKLKGNRSSTGVKDT-------------AIKTSK 454 (1110)
Q Consensus 395 salDAL~TLAdlS-l~~P~~~~esess~q~~~e~~------k~~~ps~~s~~~~~~~~~~~-------------~~k~sk 454 (1110)
+|||++++|.++ .|+|...++++++.+.++++. +++.+..+++.++.+...+. .+.+.|
T Consensus 305 -~~~~~~~~ae~~~s~~p~~~l~S~~~t~~~~~~s~~i~d~~ss~~~iv~~~~~~~~~nv~~~ke~L~~~l~a~~~~k~k 383 (837)
T KOG1019|consen 305 -GLDALKLPAEESVSMLPGNRLESESSTHYKEERSGIIMDVNSSGFEIVETSPHIPKNNVSDTKELLDGKLRALSKRKIK 383 (837)
T ss_pred -hhhhhccchhhcccccccccchhhcccccccccccceeccCcCCceeeccCcCCccccchhhhhhhhhhhhhhhhhccc
Confidence 499999999999 999999999999999999882 33334445555544444333 233677
Q ss_pred cCCCCCCCCCccCccccCcccCCCcccccccccchhhh------------hhhhHHHhhhhhccccccccccccccCccc
Q 001272 455 LGKDCTDDVSVIPESEEGNHLTNSGNRTKRQKFLPIKL------------RMDATEELKKFISKGKRSLSASQSKHGKLV 522 (1110)
Q Consensus 455 ~~k~~~~d~~~~~e~~~~~~~~~~~~~krk~K~~~~k~------------k~~~~~e~~~~~~kgk~~~~~~~~~q~~~v 522 (1110)
+.|..+.|+..+++....+.+ ++++++.+.++. +......+.++.+++++..+.+..+|...+
T Consensus 384 ~~k~~s~d~~~v~~~il~~ls-----~~~~~~v~D~et~~ei~q~~S~~~~~~~~~~e~~s~v~~~r~~~~~a~~q~~t~ 458 (837)
T KOG1019|consen 384 PSKPLSTDGVRVSVAILMDLS-----RKRKLLVLDVETPKEISQSKSRNRGESTERLEKKSLVKGRRYSAVPANLQRLTK 458 (837)
T ss_pred ccccccCCCccchhHHhhhhc-----ccCccccccccchhhhhcccccccccchhhhhhhhhhhhhhhhhhhHHHHHhhh
Confidence 788889999999998775444 566667666653 111222236788889999888777999999
Q ss_pred CCCC-CCCCCcccccCCCCCCCcccccccCCcCCCccccchhhhhhcchhhhhhccchhhhhcccccccccCCCCCcccc
Q 001272 523 KPPE-HTSSTDHEKEGNNSASSTAHVRTANQVNLPTKVRSRRKMNMQKLLIERDKMSSEDILKSSEDIFNDQNRTNSSFF 601 (1110)
Q Consensus 523 ~~~e-~~~ssd~~~~~~~~~~st~~v~~~~qv~l~tK~rSRRK~~~~k~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 601 (1110)
+..+ ..+-+|......|....+.++..-+..-++.|.+.+|++.+++.+.++.++..-+-+.+... |+ ++.
T Consensus 459 ~i~~~~~l~~d~~~~~~d~~~~~~q~s~~~~~~~~Qk~~n~rd~elk~a~~e~~~~~e~~h~~~~s~--n~----~Sq-- 530 (837)
T KOG1019|consen 459 KIGEESRLTRDKKELGADADIQPRQVSKSGPAFQEQKAPNIRDIELKNALQEKALSGEQDHHMYFSR--ND----LSQ-- 530 (837)
T ss_pred hccchhhhhhhhhhcccccccccchhcccchhhhhhhcchhHHHHHHhHHHHHHhhcccchhhhccc--cc----hhH--
Confidence 9984 47888988888888999999999888999999999999999999999987644343333321 10 000
Q ss_pred ccHHHHHHHHHhhhccccccCeeeeeccccCCChhhhccchHHHHHhhcCCCCCCCcchhhHHHHHhhcCCCCCCcHHHH
Q 001272 602 DRAIKQKEQLSNCLSWYQVRVWCVSEWFYSTIDYPWFAKREFVEYLDHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFL 681 (1110)
Q Consensus 602 ~~~~~l~~rL~n~L~~pkarRW~~yEwFYS~IDkp~F~~NEF~e~L~e~gl~~~~rLTR~EW~~IRrsmGKPRRFS~aFL 681 (1110)
....++.++.+|+..+...+||++||||+++|.+||..-+|..||.+++|++++++++++|.+|-..+|.|| |..|+
T Consensus 531 -~~l~~~~kre~c~~~~~~~vd~i~~~~~~~~~~l~~~k~~~Td~L~~v~lg~~p~~s~V~~~vl~~~lqepr--s~~~~ 607 (837)
T KOG1019|consen 531 -SELLPKAKREECSSQAGRTVDHINEGFYSANPHLGFLKMEFTDYLNHVRLGGTPRLSAVEWSVLKSSLQEPR--STRIL 607 (837)
T ss_pred -HHhcchhHHHhhhccCchhHHHHHhHHhhcCcchhHHHhhhhhhhhccccccccchhhhhHHHHHHHhhcch--hhhhh
Confidence 112236799999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccCCCCcccCCCccCCCEEEEEcCCCCCcccceEEEEecCeeEEEecCCCCceeEe
Q 001272 682 KEEKEKLNQYRESVRNHYSELRSGTKEGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEFV 761 (1110)
Q Consensus 682 ~EER~kLE~~R~~IRqlq~e~~~~~~e~LP~dIP~PL~VGqkV~A~hP~trgL~dGtVlaVd~~~YRV~FDRpeLGv~~V 761 (1110)
.+||+.|+.|++.+|.+|.++...-.+.+++++.+||.|| |.||.|+++|||.|++++++.|-|-|+ +||++.|
T Consensus 608 ~~er~~lq~yvE~~~k~~~~l~s~~~~~~~t~~~r~~d~~----~s~p~t~e~~d~~~~~~~~n~~~~~~~--~~~a~~~ 681 (837)
T KOG1019|consen 608 QEEREKLQDYVESVRKTYHELRSEAGELLGTDLARKLDVG----ASHPKTREIHDGKILTVDHNKCNVLFD--KLGAELV 681 (837)
T ss_pred hhHHHHHHHHHHhhhcchhhhhccccccccchhccccccc----cCCcchhhhhhhhhhhcccccCccchh--hhccccc
Confidence 9999999999999999999999988999999999999999 999999999999999999999999999 7899999
Q ss_pred cccccccCCCCCCCCcccccccccccccchhhhhhhhcCCCCcccccCccc-cCccccccccCCCCCCCCCCCCcchhhh
Q 001272 762 QDIDCMPLNPLENMPASLTRPNVAFGKFMDNFTELQMNGQPRERDIEGYMK-FTPCENLETAYAPSHISPSTNYPINNLL 840 (1110)
Q Consensus 762 pD~dVmpl~p~e~mP~sl~~~~~~~n~~~~~~~e~~~~~~~~e~~~~g~~~-f~~~e~~~~~~~~~h~~p~~~~~~~~l~ 840 (1110)
+|++|||++|.+.+|+-++++. .++.+...|++.+|+. ..|++. |.+|+ ++|
T Consensus 682 ~~q~~~~ln~~~dk~e~~~r~~---d~~~~~~~e~q~~g~~----na~~~s~~~~~~-~~~------------------- 734 (837)
T KOG1019|consen 682 MDQDCMPLNPLEDKPEGLRRQI---DKCLEKEKEAQLGGHE----NAGYSSLFRPDE-LEN------------------- 734 (837)
T ss_pred chhhccccChhhhhhhhhhhhh---hHHHHHHHHHHhCCCC----CcCchhhcCchh-HHH-------------------
Confidence 9999999999999999998876 6788888999999886 555554 44443 211
Q ss_pred hccccccccCcccccccccchhhHhHHHhhHhHHHHHHHHHHHHHhhhhcccccCCCccCCCCcCCCCCCCCCCCCCCCC
Q 001272 841 QQHKGVSYTDSEVHVGSTGQAKEEDVLALSHLRHALDKKVASALFCLRQRNTYQGNTCLTGLKPMSGLGNLGGGLPNSFD 920 (1110)
Q Consensus 841 ~~~k~~~~~~~~~q~~~~~Q~~Eadi~al~els~aLdkkvs~aL~~LRqrnty~~n~~~~~~k~~~~~~~~~~g~~~~~~ 920 (1110)
++ .+.+ ..|| -++-+|..++|+||-..+ +....+ +.+.+..
T Consensus 735 ----------v~-------------fq~~----~~~d-~~~~~L~g~~q~~~~~~~--------~~~~~E-~~~~l~~-- 775 (837)
T KOG1019|consen 735 ----------VE-------------FQMN----QQLD-PEEPHLDGKVQHNTIEIQ--------KLKLEE-IQRELAL-- 775 (837)
T ss_pred ----------HH-------------HHHH----hccC-chhhhhhhhhhccchHhh--------hccccc-hhhHHHh--
Confidence 00 0000 1111 156689999999992111 222333 4444333
Q ss_pred CCCCCCCCCCCchhhhhhhcHHHHHHHHHHHHHHHhhhhhcCC-hhhHHHHHHH
Q 001272 921 HSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGN-GIERIEEAMD 973 (1110)
Q Consensus 921 ~~~~~~~e~gs~v~eiv~~Sr~~A~~MVd~A~qA~~~~~kege-~~~~i~~ald 973 (1110)
.++...+|++++|+|||..|+.+|++|||+||||.+ ++||+| ....|+|||+
T Consensus 776 qh~~~~~~~~~~~~eiv~~s~i~a~kmvd~a~qaa~-~~~~de~~~~~meea~~ 828 (837)
T KOG1019|consen 776 QHLDDEEEMEPEMVEIVTQSKIEAQKMVDAAIQAAS-STKEDEDVNLMMEEALE 828 (837)
T ss_pred hcCChhhhcCcchhhhhhhhHHHHHHHHHHHHHHHH-hhcccchhhHHHHHHHh
Confidence 345779999999999999999999999999999999 999999 8899999998
No 2
>PF06584 DIRP: DIRP; InterPro: IPR010561 DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of Drosophila melanogaster and mustard weed. Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway.
Probab=100.00 E-value=2e-38 Score=300.04 Aligned_cols=102 Identities=44% Similarity=0.747 Sum_probs=95.7
Q ss_pred cccCCChhhhccchHHHHH-hhcCCCCCCCcchhhHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhh-----
Q 001272 629 FYSTIDYPWFAKREFVEYL-DHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFLKEEKEKLNQYRESVRNHYSEL----- 702 (1110)
Q Consensus 629 FYS~IDkp~F~~NEF~e~L-~e~gl~~~~rLTR~EW~~IRrsmGKPRRFS~aFL~EER~kLE~~R~~IRqlq~e~----- 702 (1110)
|||+||+|||..|||++|| .++|++++++|||+||+.||++||||||||++||+|||++||+||++||++|+..
T Consensus 1 FYS~iDk~~f~~neF~~~L~e~~p~l~t~~ltR~eW~~IRr~mGKPRRfS~aF~~eER~~Le~~R~~iR~lQ~~~~~~~~ 80 (109)
T PF06584_consen 1 FYSFIDKPLFEDNEFQECLRESFPLLKTRKLTRVEWQKIRRSMGKPRRFSPAFLEEEREELERKRQKIRQLQQRKFHDTE 80 (109)
T ss_pred CCccccHHHHhhhHHHHHHHHhCCcccCCccCHHHHHHHHHHcCCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999999 5589999999999999999999999999999999999999999999999988653
Q ss_pred -hccccCCCCcccCCCccCCCEEEEEcCC
Q 001272 703 -RSGTKEGLPTDLARPLYVGQRIIAVHPR 730 (1110)
Q Consensus 703 -~~~~~e~LP~dIP~PL~VGqkV~A~hP~ 730 (1110)
..+.+++||++||+||+|||||||+||+
T Consensus 81 ~~~~~~~~lP~~iP~pL~vG~kV~arl~~ 109 (109)
T PF06584_consen 81 LNSDLLEDLPDEIPLPLSVGTKVTARLPK 109 (109)
T ss_pred cchhhhhcCchhcCCcCCCCCEEEEecCC
Confidence 2356889999999999999999999985
No 3
>KOG1019 consensus Retinoblastoma pathway protein LIN-9/chromatin-associated protein Aly [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.96 E-value=1.5e-31 Score=312.16 Aligned_cols=646 Identities=14% Similarity=0.020 Sum_probs=468.1
Q ss_pred CcccccCCCccccccccccCCcccccCccccCCCCCCCCCChhhHHHHHHHHHHHhhcCCCCCccCCccCcCCCCCCCCC
Q 001272 182 PRAVAKRTPRVPVSYSYDKDNTEKYISPIKQGLKPRLGSIDDDVAHEIALALTEASQRGGSLLVSQTPKRKRGKPSPVQK 261 (1110)
Q Consensus 182 ~~avgKRTPRvpvs~~~~kd~~e~~i~p~~r~~K~~~da~ddd~~h~iAlAltEasqRGgSp~vS~tP~Rr~~~~Sp~~~ 261 (1110)
+.|||| |||.+|.+.+.+|+++.|.++..+..++.-...+|...+.++.+++|+.+ +.+.++.|..+..-|..+
T Consensus 1 ~a~vRk-rk~~~~~~~~~ndtsp~~~~~~~sKt~qR~~~~~d~l~pq~s~~~~e~~~-----k~~~k~~~~~r~~~~~~~ 74 (837)
T KOG1019|consen 1 MAAVRK-RKSKSVDKRFTNDTSPRYDSGSTSKTPQRKRKLADKLSPQWSKLELERFY-----KAYRKRGREWRKSPAAVR 74 (837)
T ss_pred CCcccc-cccccccccccccccccccccccccCCCCCcccccccCcchhHhhhhhhh-----hccccccccccccccccc
Confidence 579999 99999999999999999999999999999899999999999999999988 677788886663337888
Q ss_pred CCcccccccccCCCCCCCCccccccccCCCCCCCCCCcccccchhhhccccchhHHHHhhccccccccchhhhcccCCcc
Q 001272 262 GSRTCDVSEMNSSKPHGSEMDEDGRELSLGSTDADNGYYSRDKIYLMDAETADTVEIQQKGKRYHSKKLKQEESVSNHLD 341 (1110)
Q Consensus 262 ~~k~~~~Se~~ssK~hgs~~de~~~E~SlgS~~a~~g~y~rd~s~lm~~eg~~~v~~~~K~k~~~~kk~kve~~~~~~~d 341 (1110)
+.++..+-+...++.+...+-..++|..+|+++..+++|.-..-+.=.++|.+-++..+|..++++.++ . +.+
T Consensus 75 ~~R~s~~vell~~~n~Ay~S~~~~~~si~G~~~~~t~~ys~~~gs~~~~e~~d~sE~e~k~~k~kr~~v------a-~~~ 147 (837)
T KOG1019|consen 75 STRSSNMVELLKAMNKAYLSLSEGTESILGLIEPMTDHYSVLEGSGPEGESNDASEKERKAIKRKRAKV------A-KRS 147 (837)
T ss_pred chhhhhHHHHHHhhhcccccccccccccccccccCCCccchhcCCCCCCccchhhhhhHHHHHHHhhcc------c-ccc
Confidence 889988888888888999999999999999999999999988777778888888999999988887665 4 789
Q ss_pred hhhhhccCccccchhhhhcccchhhhcccccccCCcccccccccccccCCCcchhhhHHHHHHHhhccCCCccccccccc
Q 001272 342 DIKEACSGTEEGQDMVVMKGKFAMEIADEKNSRSYSKGSKKRSKKVLFKRDESSEFDALQTLADLSLMMPETTADTELSL 421 (1110)
Q Consensus 342 D~~EAcSgteeg~~~~~~k~~~e~ev~~~k~~~~s~~~~~kRskklf~~d~e~salDAL~TLAdlSl~~P~~~~esess~ 421 (1110)
|..|+|++|.+-.+++.-+..++..+.+.-. +++-++..+-- +..+-||+.+++++..+++......+.+.
T Consensus 148 D~~eg~~l~n~~~s~~~~~~~~~q~~~~~~~--------k~~~~~~~~~~-~~~aed~~~~s~~n~r~~~ql~r~~~ksR 218 (837)
T KOG1019|consen 148 DFDEGLRLTNEAKSLSGHLWFFKQFRTSQAD--------KPTLKQFLVYK-NQTAEDAPTLSRPNIRALWQLDRRDGKSR 218 (837)
T ss_pred cccccccchhhhccccchHHHHHHHHhhhhc--------cccchhhhHHH-hhhhhhhhhccchhhhhhhhhhcccccch
Confidence 9999999999999999999888888775543 33444433333 77889999999999999999999999999
Q ss_pred cccccC------------ccccccccccCCCCCCCCccchhhccccCCCCCCCCCccCccccCcccCCCcccccccccch
Q 001272 422 QLKEEK------------PEAVNESKLKGNRSSTGVKDTAIKTSKLGKDCTDDVSVIPESEEGNHLTNSGNRTKRQKFLP 489 (1110)
Q Consensus 422 q~~~e~------------~k~~~ps~~s~~~~~~~~~~~~~k~sk~~k~~~~d~~~~~e~~~~~~~~~~~~~krk~K~~~ 489 (1110)
|+..+. ..+..+-.-+-.....+++++..--.++ .-+..+...|++ .=+-+.+.+..+
T Consensus 219 r~~~~~f~~e~~E~~~~~~~~~~~~sr~~~~~~~nss~~~~~~~~i---------~~~l~~~~~~Ss-~L~~~er~~~~~ 288 (837)
T KOG1019|consen 219 RGSAPFFREELSEQIPKRERIKTSQSREKFSKLKNSSMLRIGPRSI---------PKPLGKPDRVSS-LLMDMERMGLEE 288 (837)
T ss_pred hccchhhHhHHhhhhHHHHhhhhhhhhcccCCCCchHHhhhhhhhc---------ccccccCccchh-hhhchhhccccc
Confidence 876622 0000000000000112222221000000 000011111110 001111111111
Q ss_pred hhh-hh---------------hhHHHhhhhhcccccccccccc--ccCcccCCCCCCCCCcccccCCCCCCCcccccccC
Q 001272 490 IKL-RM---------------DATEELKKFISKGKRSLSASQS--KHGKLVKPPEHTSSTDHEKEGNNSASSTAHVRTAN 551 (1110)
Q Consensus 490 ~k~-k~---------------~~~~e~~~~~~kgk~~~~~~~~--~q~~~v~~~e~~~ssd~~~~~~~~~~st~~v~~~~ 551 (1110)
.++ ++ ..++++..+++-|.+.-..... ++..+.......+++....... +..+.+.....
T Consensus 289 ~kv~~~e~ae~sy~~d~~~~~~~~ae~~~s~~p~~~l~S~~~t~~~~~~s~~i~d~~ss~~~iv~~~--~~~~~~nv~~~ 366 (837)
T KOG1019|consen 289 AKVVKDELAEGSYLDDGLDALKLPAEESVSMLPGNRLESESSTHYKEERSGIIMDVNSSGFEIVETS--PHIPKNNVSDT 366 (837)
T ss_pred ceeEeechhhhhhhhhhhhhhccchhhcccccccccchhhcccccccccccceeccCcCCceeeccC--cCCccccchhh
Confidence 111 11 1345555666666665444333 2322444444444444321111 22233344456
Q ss_pred CcCCCccccchh--hhhhcchhhhhhccchhhhhcccccccccCCCCCccccccHHHHHHHHHhhhccccccCeeeeecc
Q 001272 552 QVNLPTKVRSRR--KMNMQKLLIERDKMSSEDILKSSEDIFNDQNRTNSSFFDRAIKQKEQLSNCLSWYQVRVWCVSEWF 629 (1110)
Q Consensus 552 qv~l~tK~rSRR--K~~~~k~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rL~n~L~~pkarRW~~yEwF 629 (1110)
+++|++|.++++ |+...|++.+..+.-+..++... + .+......+...-+.+.++++...+..|+..| |
T Consensus 367 ke~L~~~l~a~~~~k~k~~k~~s~d~~~v~~~il~~l-------s-~~~~~~v~D~et~~ei~q~~S~~~~~~~~~~e-~ 437 (837)
T KOG1019|consen 367 KELLDGKLRALSKRKIKPSKPLSTDGVRVSVAILMDL-------S-RKRKLLVLDVETPKEISQSKSRNRGESTERLE-K 437 (837)
T ss_pred hhhhhhhhhhhhhhcccccccccCCCccchhHHhhhh-------c-ccCccccccccchhhhhcccccccccchhhhh-h
Confidence 899999999998 88888999887665444433222 1 23334556666678999999999999999999 9
Q ss_pred ccCCChhhhccchHHHHHhhcCCCCCCCcchhhHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 001272 630 YSTIDYPWFAKREFVEYLDHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFLKEEKEKLNQYRESVRNHYSELRSGTKEG 709 (1110)
Q Consensus 630 YS~IDkp~F~~NEF~e~L~e~gl~~~~rLTR~EW~~IRrsmGKPRRFS~aFL~EER~kLE~~R~~IRqlq~e~~~~~~e~ 709 (1110)
||.++.+||..-.|...+-..++++..+|+|..|..++...++||++|..|..++++++--+|++.|.+|........++
T Consensus 438 ~s~v~~~r~~~~~a~~q~~t~~i~~~~~l~~d~~~~~~d~~~~~~q~s~~~~~~~~Qk~~n~rd~elk~a~~e~~~~~e~ 517 (837)
T KOG1019|consen 438 KSLVKGRRYSAVPANLQRLTKKIGEESRLTRDKKELGADADIQPRQVSKSGPAFQEQKAPNIRDIELKNALQEKALSGEQ 517 (837)
T ss_pred hhhhhhhhhhhhhHHHHHhhhhccchhhhhhhhhhcccccccccchhcccchhhhhhhcchhHHHHHHhHHHHHHhhccc
Confidence 99999999999999888888899999999999999999999999999999999999999999999999998877778899
Q ss_pred CCcccCCCccCCCEEEEEcCCCCCcccceEEEEecCeeEEEecCCCCceeEecccccccCCCCCCCCccccccccccccc
Q 001272 710 LPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEFVQDIDCMPLNPLENMPASLTRPNVAFGKF 789 (1110)
Q Consensus 710 LP~dIP~PL~VGqkV~A~hP~trgL~dGtVlaVd~~~YRV~FDRpeLGv~~VpD~dVmpl~p~e~mP~sl~~~~~~~n~~ 789 (1110)
.+.+...+..+-|.++-.++.....+++-+.+||+..|.+.|+.|.+|+.++-++|||+..+++++|......-..++.+
T Consensus 518 ~h~~~~s~n~~Sq~~l~~~~kre~c~~~~~~~vd~i~~~~~~~~~~l~~~k~~~Td~L~~v~lg~~p~~s~V~~~vl~~~ 597 (837)
T KOG1019|consen 518 DHHMYFSRNDLSQSELLPKAKREECSSQAGRTVDHINEGFYSANPHLGFLKMEFTDYLNHVRLGGTPRLSAVEWSVLKSS 597 (837)
T ss_pred chhhhccccchhHHHhcchhHHHhhhccCchhHHHHHhHHhhcCcchhHHHhhhhhhhhccccccccchhhhhHHHHHHH
Confidence 99999999999999998888888999999999999999999999999999999999999999999999988875555555
Q ss_pred chhhhhhhhcCCCCcccccCccccCccccccccCCCCCCCCCCCCcchhhhhcccccccc----Cccccc----------
Q 001272 790 MDNFTELQMNGQPRERDIEGYMKFTPCENLETAYAPSHISPSTNYPINNLLQQHKGVSYT----DSEVHV---------- 855 (1110)
Q Consensus 790 ~~~~~e~~~~~~~~e~~~~g~~~f~~~e~~~~~~~~~h~~p~~~~~~~~l~~~~k~~~~~----~~~~q~---------- 855 (1110)
+++..+-.| .+..+-+..+|-... -...|..-+..+.+..+..+.|+.+.. +.+.+.
T Consensus 598 lqeprs~~~-~~~er~~lq~yvE~~--------~k~~~~l~s~~~~~~~t~~~r~~d~~~s~p~t~e~~d~~~~~~~~n~ 668 (837)
T KOG1019|consen 598 LQEPRSTRI-LQEEREKLQDYVESV--------RKTYHELRSEAGELLGTDLARKLDVGASHPKTREIHDGKILTVDHNK 668 (837)
T ss_pred hhcchhhhh-hhhHHHHHHHHHHhh--------hcchhhhhccccccccchhccccccccCCcchhhhhhhhhhhccccc
Confidence 544441111 111111111121111 122344434455556666677776542 111111
Q ss_pred --c--cccchhhHhHHHhhHhHHHHHHH
Q 001272 856 --G--STGQAKEEDVLALSHLRHALDKK 879 (1110)
Q Consensus 856 --~--~~~Q~~Eadi~al~els~aLdkk 879 (1110)
+ .++|+++++.++|.+|++++||+
T Consensus 669 ~~~~~~~~~a~~~~~q~~~~ln~~~dk~ 696 (837)
T KOG1019|consen 669 CNVLFDKLGAELVMDQDCMPLNPLEDKP 696 (837)
T ss_pred CccchhhhcccccchhhccccChhhhhh
Confidence 1 69999999999999999999998
No 4
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.02 E-value=4e-10 Score=97.08 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC-Ch---HHHHHHHh-cc-hHHHHHHHHhhhhhhccc
Q 001272 43 LGPQWSKEELERFYEAYRKYGK-DW---KKIAAAVR-NR-TAEMVEALFTMNRAYLSL 94 (1110)
Q Consensus 43 lg~rWs~eEh~rFlea~r~yGk-~W---kkVa~~V~-tR-T~~qVrsly~~~k~~l~l 94 (1110)
.+-.||+|||++|++|+..||. +| ++|+.+++ +| |..||+|| .||||++.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH--~QKy~~k~ 57 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASH--LQKYRLKQ 57 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHH--HHHHHccC
Confidence 3568999999999999999999 99 99998876 78 99999999 99999863
No 5
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.85 E-value=4.5e-09 Score=85.90 Aligned_cols=45 Identities=42% Similarity=0.702 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC-hHHHHHHHh-cchHHHHHHHHhhh
Q 001272 44 GPQWSKEELERFYEAYRKYGKD-WKKIAAAVR-NRTAEMVEALFTMN 88 (1110)
Q Consensus 44 g~rWs~eEh~rFlea~r~yGk~-WkkVa~~V~-tRT~~qVrsly~~~ 88 (1110)
++.||.||++.|++|+++||.+ |++||..|+ +||..|++.+|...
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 3689999999999999999998 999999999 99999999998753
No 6
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.33 E-value=1e-06 Score=68.78 Aligned_cols=44 Identities=36% Similarity=0.641 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CChHHHHHHHhcchHHHHHHHHhh
Q 001272 44 GPQWSKEELERFYEAYRKYG-KDWKKIAAAVRNRTAEMVEALFTM 87 (1110)
Q Consensus 44 g~rWs~eEh~rFlea~r~yG-k~WkkVa~~V~tRT~~qVrsly~~ 87 (1110)
+..||.+|.+.|+.++..|| .+|..|+..+.+||..+|+..|..
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~ 45 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNN 45 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 35899999999999999999 899999999999999999998764
No 7
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.29 E-value=1.1e-06 Score=67.78 Aligned_cols=42 Identities=36% Similarity=0.671 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHcC-CChHHHHHHHhcchHHHHHHHHhh
Q 001272 46 QWSKEELERFYEAYRKYG-KDWKKIAAAVRNRTAEMVEALFTM 87 (1110)
Q Consensus 46 rWs~eEh~rFlea~r~yG-k~WkkVa~~V~tRT~~qVrsly~~ 87 (1110)
.||.||.+.|+.++..|| .+|.+|+..+++||..+|+..|..
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHH
Confidence 499999999999999999 899999999999999999998754
No 8
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.93 E-value=1.3e-05 Score=67.71 Aligned_cols=41 Identities=44% Similarity=0.733 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhh
Q 001272 47 WSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTM 87 (1110)
Q Consensus 47 Ws~eEh~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsly~~ 87 (1110)
||+||-++.++++..||.+|++||.++++||..||+..|..
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765
No 9
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.50 E-value=8.5e-05 Score=85.73 Aligned_cols=45 Identities=38% Similarity=0.711 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhcccC
Q 001272 45 PQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLP 95 (1110)
Q Consensus 45 ~rWs~eEh~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsly~~~k~~l~lp 95 (1110)
.-||.+|+...||++..||-||.|||.||||||++|--= .||.||
T Consensus 280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl------~FL~LP 324 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCIL------HFLQLP 324 (531)
T ss_pred ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHH------HHHcCC
Confidence 489999999999999999999999999999999999744 499999
No 10
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.95 E-value=0.00077 Score=79.43 Aligned_cols=56 Identities=29% Similarity=0.552 Sum_probs=49.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhcccCccccccc
Q 001272 41 DMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVV 102 (1110)
Q Consensus 41 d~lg~rWs~eEh~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsly~~~k~~l~lpeg~as~~ 102 (1110)
.-.++-||+.|.-..|||+.+||-||.+|+.|||+||.+|-=.+ ||.||=+.+...
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~k------FL~LPieD~~l~ 305 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILK------FLRLPIEDPYLA 305 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHH------HHhcCccchhhh
Confidence 34788999999999999999999999999999999999998665 999996665433
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.72 E-value=0.0017 Score=70.72 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHh
Q 001272 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFT 86 (1110)
Q Consensus 43 lg~rWs~eEh~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsly~ 86 (1110)
-.+.||+||-+.-++.+..||..|.+||.++..||..||+-.|+
T Consensus 77 ~kgpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWn 120 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWN 120 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHH
Confidence 45699999999999999999999999999999999999999886
No 12
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.13 E-value=0.0077 Score=69.76 Aligned_cols=59 Identities=24% Similarity=0.469 Sum_probs=51.1
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHhhhhhhcccCccccc
Q 001272 40 SDMLGPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTAS 100 (1110)
Q Consensus 40 sd~lg~rWs~eEh~rFlea~r~yGk-~WkkVa~~V~tRT~~qVrsly~~~k~~l~lpeg~as 100 (1110)
...+.+-||-+|--.||||+..||= +|.-||.+|||||.++++.|| .|+|+-=|=|-.+
T Consensus 68 ~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy--~k~fv~s~~~~~~ 127 (438)
T KOG0457|consen 68 FPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHY--LKHFVNSPIFPLP 127 (438)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHH--HHHHhcCcccccc
Confidence 3457789999999999999999998 899999999999999999996 4778876655444
No 13
>PLN03091 hypothetical protein; Provisional
Probab=95.76 E-value=0.012 Score=68.55 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhh
Q 001272 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTM 87 (1110)
Q Consensus 43 lg~rWs~eEh~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsly~~ 87 (1110)
-.+.||+||-++.++.++.||..|.+||.++..||..||+-.|+.
T Consensus 66 kKgpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWns 110 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNS 110 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHH
Confidence 356999999999999999999999999999999999999998873
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=95.17 E-value=0.027 Score=61.65 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=40.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHh-cchHHHHHHHHh
Q 001272 42 MLGPQWSKEELERFYEAYRKYGK-DWKKIAAAVR-NRTAEMVEALFT 86 (1110)
Q Consensus 42 ~lg~rWs~eEh~rFlea~r~yGk-~WkkVa~~V~-tRT~~qVrsly~ 86 (1110)
+-++.||.||=++-+++..+||. +|+.||..++ +||..|.|..|.
T Consensus 23 lKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~ 69 (249)
T PLN03212 23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWM 69 (249)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHH
Confidence 34678999999999999999995 8999999997 899999999865
No 15
>PLN03091 hypothetical protein; Provisional
Probab=94.68 E-value=0.035 Score=64.83 Aligned_cols=42 Identities=24% Similarity=0.468 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHh-cchHHHHHHHH
Q 001272 44 GPQWSKEELERFYEAYRKYGK-DWKKIAAAVR-NRTAEMVEALF 85 (1110)
Q Consensus 44 g~rWs~eEh~rFlea~r~yGk-~WkkVa~~V~-tRT~~qVrsly 85 (1110)
.++||.||=++.++++.+||. +|++||..++ +||..|.|..|
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW 57 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRW 57 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHH
Confidence 358999999999999999997 7999999997 89999999886
No 16
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=0.045 Score=60.75 Aligned_cols=52 Identities=12% Similarity=0.065 Sum_probs=48.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhcccCc
Q 001272 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPE 96 (1110)
Q Consensus 43 lg~rWs~eEh~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsly~~~k~~l~lpe 96 (1110)
..++||.++|++|+++|..|+..|.++..+++.++..+++++ .+++|.++.-
T Consensus 52 ~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~p~~~~ 103 (335)
T KOG0724|consen 52 DEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRES--GQKPFPKYGK 103 (335)
T ss_pred cccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhc--cCCCccccCc
Confidence 456799999999999999999999999999999999999887 8999999963
No 17
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=92.77 E-value=0.088 Score=63.22 Aligned_cols=47 Identities=32% Similarity=0.704 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCChHHH----------HHHHhcchHHHHHHHHh-----hhhhh
Q 001272 45 PQWSKEELERFYEAYRKYGKDWKKI----------AAAVRNRTAEMVEALFT-----MNRAY 91 (1110)
Q Consensus 45 ~rWs~eEh~rFlea~r~yGk~WkkV----------a~~V~tRT~~qVrsly~-----~~k~~ 91 (1110)
--||-.|-+-|++||+.||||+.+| -.-+.-+|.+|||.+|. |+|+-
T Consensus 89 taWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~ 150 (782)
T KOG4468|consen 89 TAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLL 150 (782)
T ss_pred cccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Confidence 3799999999999999999999999 44456789999998875 55554
No 18
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=92.63 E-value=0.56 Score=54.20 Aligned_cols=50 Identities=30% Similarity=0.468 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHcCCChHHHH-HHHhcchHHHHHHHHhhhhhhcccCcccc
Q 001272 46 QWSKEELERFYEAYRKYGKDWKKIA-AAVRNRTAEMVEALFTMNRAYLSLPEGTA 99 (1110)
Q Consensus 46 rWs~eEh~rFlea~r~yGk~WkkVa-~~V~tRT~~qVrsly~~~k~~l~lpeg~a 99 (1110)
-||++|-..|-++|++||||+--|- .-|+||||-..-..|.+- |+-||.-
T Consensus 279 ~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlW----KkSeryd 329 (445)
T KOG4329|consen 279 GWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLW----KKSERYD 329 (445)
T ss_pred cCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHh----hcCcchh
Confidence 5999999999999999999999985 579999999987777654 4555543
No 19
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=92.40 E-value=0.16 Score=58.59 Aligned_cols=42 Identities=36% Similarity=0.707 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHh
Q 001272 45 PQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFT 86 (1110)
Q Consensus 45 ~rWs~eEh~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsly~ 86 (1110)
.+||++|.++||.||-.+|-|+--|+...-+|.-.||.+-|-
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi 407 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFI 407 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHH
Confidence 399999999999999999999999999999999999998763
No 20
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=91.76 E-value=0.37 Score=40.26 Aligned_cols=51 Identities=27% Similarity=0.380 Sum_probs=40.5
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEecCCCCce-eEecccccccCC
Q 001272 717 PLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELGI-EFVQDIDCMPLN 770 (1110)
Q Consensus 717 PL~VGqkV~A~hP~trgL~dGtVlaVd~-~~YRV~FDRpeLGv-~~VpD~dVmpl~ 770 (1110)
++.+|+.|.|.. .....|.|+|+.+++ ..|.|.|.- .|. +.|+=.++.++.
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~~~~~~~~~V~f~D--~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIKVDGEQLYEVFFID--YGNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEEECCCCEEEEEEEC--CCccEEEeHHHeecCC
Confidence 578999999998 666789999999999 899999994 343 566655555553
No 21
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=91.67 E-value=0.23 Score=56.41 Aligned_cols=50 Identities=20% Similarity=0.415 Sum_probs=45.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHhhhhhhc
Q 001272 41 DMLGPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFTMNRAYL 92 (1110)
Q Consensus 41 d~lg~rWs~eEh~rFlea~r~yGk-~WkkVa~~V~tRT~~qVrsly~~~k~~l 92 (1110)
..+.+-|+.+|--.|++++...|- +|.-||.+||.|+.+.|++||- |+|+
T Consensus 60 pI~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~Hyl--K~y~ 110 (432)
T COG5114 60 PIGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYL--KMYD 110 (432)
T ss_pred cccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHH--HHHh
Confidence 456789999999999999999998 8999999999999999999964 5665
No 22
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=88.54 E-value=0.68 Score=46.43 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=35.8
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEec---CeeEEEecCCC--CceeEeccccccc
Q 001272 717 PLYVGQRIIAVHPRTREICDGSVLTVEH---SRYRVQFDKRE--LGIEFVQDIDCMP 768 (1110)
Q Consensus 717 PL~VGqkV~A~hP~trgL~dGtVlaVd~---~~YRV~FDRpe--LGv~~VpD~dVmp 768 (1110)
-|+.|++|+|+.|.|-.+|.++|.+.-. ..|+++|+-.+ -|.+.|+.--|++
T Consensus 71 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~~~~~V~~r~Vv~ 127 (130)
T PF07039_consen 71 EFPKGTKVLALYPDTTCFYPATVVSPPKKKSGEYKLKFEDDEDADGYREVPQRYVVA 127 (130)
T ss_dssp S--TT-EEEEE-TTSSEEEEEEEEEE-SSTTS-EEEEECTTTSTTSBEEE-GGGEEE
T ss_pred hCCCCCEEEEECCCCceEEEEEEEeCCCCCCCcEEEEEeCCCCcCCcEEEccceEEc
Confidence 5799999999999999999999999933 68999999755 3336666554443
No 23
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=87.86 E-value=0.75 Score=49.63 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhh--hhhccc
Q 001272 44 GPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMN--RAYLSL 94 (1110)
Q Consensus 44 g~rWs~eEh~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsly~~~--k~~l~l 94 (1110)
++.||.||=+.-+++..+||-.|..||.++-.||--.|.-+.+.+ |-+.++
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~ 114 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKM 114 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHc
Confidence 679999999999999999999999999999999999999887654 444443
No 24
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=84.68 E-value=1.5 Score=43.57 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=39.3
Q ss_pred CCEEEEEcCCCCCcccceEEEEe-cCeeEEEecCCCCceeEecccccccCC
Q 001272 721 GQRIIAVHPRTREICDGSVLTVE-HSRYRVQFDKRELGIEFVQDIDCMPLN 770 (1110)
Q Consensus 721 GqkV~A~hP~trgL~dGtVlaVd-~~~YRV~FDRpeLGv~~VpD~dVmpl~ 770 (1110)
||+|+||.......|.|+|...- ...|.|.|+. ..+..|+..++++..
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~~~~~~lV~f~~--~~~~~v~~~~iI~~~ 49 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCVSSGQFLVEFDD--GDTQEVPISDIIALS 49 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEccCCCEEEEEECC--CCEEEeChHHeEEcc
Confidence 89999999888888999999864 4799999953 356778888887765
No 25
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=82.63 E-value=1.7 Score=51.55 Aligned_cols=65 Identities=20% Similarity=0.350 Sum_probs=49.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhcccCcccccccceeeeeeccccccCC
Q 001272 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILAG 117 (1110)
Q Consensus 43 lg~rWs~eEh~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsly~~~k~~l~lpeg~as~~gliAmmtdhy~~l~~ 117 (1110)
+--.||.||+-+|-.||.-|||++.||-..+-.|+..-|.-.|.--|--++ -..||.-|-+-+..
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~----------~~s~~~~h~~~~~~ 250 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTRE----------YDSQMNRHRNETKT 250 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhh----------HHHHHHHHHhhhhh
Confidence 445999999999999999999999999999999999888877654432222 12356666665543
No 26
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=82.40 E-value=3.1 Score=35.64 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=33.5
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEec-CeeEEEecC
Q 001272 717 PLYVGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDK 753 (1110)
Q Consensus 717 PL~VGqkV~A~hP~trgL~dGtVlaVd~-~~YRV~FDR 753 (1110)
-|.+|+.|-|+.+...+-|.|+|+.+.. +.|.|.|..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~~~~~~V~~~~ 39 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLGDGKYLVRYLT 39 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECC
Confidence 4789999999988777889999999999 889999986
No 27
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=82.23 E-value=1.4 Score=43.69 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=41.5
Q ss_pred CCCccCCCEEEEEcCCCC-CcccceEEE------EecCeeEEEecCCCCceeEecccccccC
Q 001272 715 ARPLYVGQRIIAVHPRTR-EICDGSVLT------VEHSRYRVQFDKRELGIEFVQDIDCMPL 769 (1110)
Q Consensus 715 P~PL~VGqkV~A~hP~tr-gL~dGtVla------Vd~~~YRV~FDRpeLGv~~VpD~dVmpl 769 (1110)
..||.+|++|+|.++..+ .-..|+|++ .....|.|.|-... ...||.-+|+.+
T Consensus 53 ~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~ng~--~~~vp~~~~~~I 112 (124)
T PF15057_consen 53 RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRFYNGK--TAKVPRGEVIWI 112 (124)
T ss_pred cCcCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEEECCC--CCccchhhEEEC
Confidence 669999999999998654 456799995 34479999998753 567777777765
No 28
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=81.46 E-value=4.7 Score=35.95 Aligned_cols=38 Identities=24% Similarity=0.551 Sum_probs=31.1
Q ss_pred CCccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEecC
Q 001272 716 RPLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDK 753 (1110)
Q Consensus 716 ~PL~VGqkV~A~hP~trgL~dGtVlaVd~--~~YRV~FDR 753 (1110)
+-+..|.+|.++-|....-|.|.|+++|. ..|.|+|+-
T Consensus 4 ~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~D 43 (55)
T PF09465_consen 4 RKFAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYED 43 (55)
T ss_dssp SSS-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETT
T ss_pred ccccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcC
Confidence 56789999999999999889999999999 689999995
No 29
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=78.59 E-value=2.3 Score=52.29 Aligned_cols=48 Identities=27% Similarity=0.433 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHhhhhh
Q 001272 43 LGPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFTMNRA 90 (1110)
Q Consensus 43 lg~rWs~eEh~rFlea~r~yGk-~WkkVa~~V~tRT~~qVrsly~~~k~ 90 (1110)
-.|+||.+|-...+.|..+||- +|-||-..|-+||-.|.|..|+--=+
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~ 407 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLN 407 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHH
Confidence 3579999999999999999987 99999999999999999999875433
No 30
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=76.06 E-value=3.4 Score=37.24 Aligned_cols=53 Identities=26% Similarity=0.604 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHH------cC--------CChHHHHHHHh----cchHHHHHHHH-hhhhhhcccCcc
Q 001272 45 PQWSKEELERFYEAYRK------YG--------KDWKKIAAAVR----NRTAEMVEALF-TMNRAYLSLPEG 97 (1110)
Q Consensus 45 ~rWs~eEh~rFlea~r~------yG--------k~WkkVa~~V~----tRT~~qVrsly-~~~k~~l~lpeg 97 (1110)
..||.+|...|++.+.. |+ .-|+.||+.+. .||..|++.-+ ++-+.|-++=+.
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~ 73 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDR 73 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999887 32 15999999987 89999999865 356667666443
No 31
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=74.39 E-value=3.8 Score=44.36 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHh-cchHHHHHHHHh
Q 001272 44 GPQWSKEELERFYEAYRKYGK-DWKKIAAAVR-NRTAEMVEALFT 86 (1110)
Q Consensus 44 g~rWs~eEh~rFlea~r~yGk-~WkkVa~~V~-tRT~~qVrsly~ 86 (1110)
.|.||.||=++..+-+++||. .|..|+...| .|+.-+.|=.++
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~ 53 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWT 53 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhh
Confidence 689999999999999999999 6999999999 887777665433
No 32
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=73.56 E-value=3.7 Score=49.01 Aligned_cols=45 Identities=29% Similarity=0.505 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHcCCChHHHH-HHHhcchHHHHHHHHhhhhh
Q 001272 46 QWSKEELERFYEAYRKYGKDWKKIA-AAVRNRTAEMVEALFTMNRA 90 (1110)
Q Consensus 46 rWs~eEh~rFlea~r~yGk~WkkVa-~~V~tRT~~qVrsly~~~k~ 90 (1110)
-||.-|...|-|||.+||||+..|- +++-=+|..-|-..|.|-|+
T Consensus 287 EWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYYmwKt 332 (693)
T KOG3554|consen 287 EWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYYMWKT 332 (693)
T ss_pred hccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHHHHhh
Confidence 6999999999999999999988875 45557777777777777654
No 33
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=73.46 E-value=6.6 Score=49.11 Aligned_cols=85 Identities=21% Similarity=0.329 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhcccCcccccccceeeeeeccccccCC-------C
Q 001272 46 QWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILAG-------S 118 (1110)
Q Consensus 46 rWs~eEh~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsly~~~k~~l~lpeg~as~~gliAmmtdhy~~l~~-------s 118 (1110)
.||-.|...|-.||-.|-||+-+|+-.|.++||.|--..|..-|- ||-|-|-+|+. -
T Consensus 621 ~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWKK----------------~~~~~~~~~~dc~r~~~le 684 (907)
T KOG4167|consen 621 KWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWKK----------------IMRLGRKIIDDCVRSEELE 684 (907)
T ss_pred cccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHHH----------------hccchhhhHhhhhhhhHHH
Confidence 899999999999999999999999999999999997777765553 56666666632 1
Q ss_pred CCCccccccccCccccccccCCccCCCC
Q 001272 119 DGEQESDEATGSSQKSQKCAGGKFQNPP 146 (1110)
Q Consensus 119 ~Se~es~~~~~~~~k~~kr~r~~~~~~~ 146 (1110)
+=+.+.|+.++--+|+.|+...++-.+.
T Consensus 685 ~~~~~e~~~pEe~~~~~k~~e~evp~Sp 712 (907)
T KOG4167|consen 685 ELEEEEEEDPEEDRKSTKEEESEVPKSP 712 (907)
T ss_pred HHHHhhccCcccccccchhhhhcCCCCC
Confidence 2224566677777888888766654443
No 34
>PLN03162 golden-2 like transcription factor; Provisional
Probab=69.77 E-value=11 Score=44.15 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---ChHHHHHHHh--cchHHHHHHHHhhhhhhcc
Q 001272 44 GPQWSKEELERFYEAYRKYGK---DWKKIAAAVR--NRTAEMVEALFTMNRAYLS 93 (1110)
Q Consensus 44 g~rWs~eEh~rFlea~r~yGk---~WkkVa~~V~--tRT~~qVrsly~~~k~~l~ 93 (1110)
+=+||.|=|++|++|+..-|- -=|+|-..++ .=|..+|.||--+-|.|++
T Consensus 237 RLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk 291 (526)
T PLN03162 237 KVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR 291 (526)
T ss_pred cccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence 448999999999999999994 3678888877 6688999999555555554
No 35
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=68.32 E-value=9.2 Score=30.94 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=32.5
Q ss_pred CCEEEEEcCCCCCcccceEEEEec-CeeEEEecCCCCce-eEecc
Q 001272 721 GQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELGI-EFVQD 763 (1110)
Q Consensus 721 GqkV~A~hP~trgL~dGtVlaVd~-~~YRV~FDRpeLGv-~~VpD 763 (1110)
|+.|.|+.+.....|.|+|+.+.+ ..|.|.|. +.|- +.|+-
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~--DyG~~~~v~~ 43 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFV--DYGNTEVVPL 43 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCCcEEEEEE--cCCCcEEEeH
Confidence 788999988777889999999995 78999998 4443 44543
No 36
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=67.12 E-value=5.5 Score=49.24 Aligned_cols=51 Identities=24% Similarity=0.411 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHH---HHhhhhhhccc
Q 001272 44 GPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEA---LFTMNRAYLSL 94 (1110)
Q Consensus 44 g~rWs~eEh~rFlea~r~yGk-~WkkVa~~V~tRT~~qVrs---ly~~~k~~l~l 94 (1110)
.++||=-|-++.+++..+||+ .|-|+|-++++||..|.++ .+-.+|-||+-
T Consensus 412 ~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl~~ 466 (939)
T KOG0049|consen 412 VERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLRLAA 466 (939)
T ss_pred cCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHHHHhc
Confidence 369999999999999999999 7999999999999977643 44567777754
No 37
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=63.47 E-value=14 Score=41.19 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=39.9
Q ss_pred CCccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEecCCCCce-eEecccccccCCCC
Q 001272 716 RPLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDKRELGI-EFVQDIDCMPLNPL 772 (1110)
Q Consensus 716 ~PL~VGqkV~A~hP~trgL~dGtVlaVd~--~~YRV~FDRpeLGv-~~VpD~dVmpl~p~ 772 (1110)
.-+.||++..|+.-....+|.++|.+|+. .+|.|+|+ +-|- +.|.=.|++|...-
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~--gYgn~e~v~l~dL~~~~~~ 124 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFT--GYGNEEEVNLSDLKPSEGD 124 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEET--TTTEEEEEEGGGEEETT--
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEc--ccCCeEeeehhhhcccccc
Confidence 47899999999977677889999999998 48999999 4443 77777888877544
No 38
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=60.77 E-value=9 Score=49.88 Aligned_cols=55 Identities=31% Similarity=0.540 Sum_probs=45.6
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHhhhhhhc
Q 001272 35 RKRKLSDMLGPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFTMNRAYL 92 (1110)
Q Consensus 35 rk~klsd~lg~rWs~eEh~rFlea~r~yGk-~WkkVa~~V~tRT~~qVrsly~~~k~~l 92 (1110)
.|.+|..--=+-|++-+...|+.|..+||| +-.+||..|.++|.+.|+.- .++|.
T Consensus 815 ~k~~l~~~gf~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y---~~~f~ 870 (1033)
T PLN03142 815 EKEQLLEEGFSTWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERY---AKVFW 870 (1033)
T ss_pred HHHHHHhcCcCcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHH---HHHHH
Confidence 344555445557999999999999999999 79999999999999999984 45555
No 39
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=58.67 E-value=12 Score=32.39 Aligned_cols=34 Identities=15% Similarity=0.478 Sum_probs=28.0
Q ss_pred ccCCCEEEEEcCCCCCcccceEEEEecC----eeEEEec
Q 001272 718 LYVGQRIIAVHPRTREICDGSVLTVEHS----RYRVQFD 752 (1110)
Q Consensus 718 L~VGqkV~A~hP~trgL~dGtVlaVd~~----~YRV~FD 752 (1110)
|.||++|.+.+ .....|.++|+.+... .|.|-|.
T Consensus 1 ~~vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~ 38 (55)
T PF11717_consen 1 FEVGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQ 38 (55)
T ss_dssp --TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEET
T ss_pred CCcCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcC
Confidence 67999999999 5567899999999884 5999998
No 40
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=53.13 E-value=14 Score=45.64 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=40.4
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHH
Q 001272 35 RKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEAL 84 (1110)
Q Consensus 35 rk~klsd~lg~rWs~eEh~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsl 84 (1110)
|+.++-+--+|.||+||.+....--..+|.+|+.|+..+|.+. ..++..
T Consensus 375 R~y~~FE~~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~lgr~P-~~crd~ 423 (607)
T KOG0051|consen 375 RAYTPFENKRGKWTPEEEEELKKLVVEHGNDWKEIGKALGRMP-MDCRDR 423 (607)
T ss_pred hcCCccccccCCCCcchHHHHHHHHHHhcccHHHHHHHHccCc-HHHHHH
Confidence 6777777567899999999999999999999999999998554 344443
No 41
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=50.62 E-value=31 Score=35.20 Aligned_cols=45 Identities=27% Similarity=0.431 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCCCcccceEEEEec-CeeEEEecCCCCcee-Eecccccc
Q 001272 720 VGQRIIAVHPRTREICDGSVLTVEH-SRYRVQFDKRELGIE-FVQDIDCM 767 (1110)
Q Consensus 720 VGqkV~A~hP~trgL~dGtVlaVd~-~~YRV~FDRpeLGv~-~VpD~dVm 767 (1110)
||-+|+|+--.....|.|+|..-.. +.|+|.||- |.+ .|.--|++
T Consensus 5 iG~rV~AkWS~n~yyY~G~I~~~~~~~kykv~FdD---G~~~~v~~~div 51 (122)
T PF09038_consen 5 IGLRVFAKWSDNGYYYPGKITSDKGKNKYKVLFDD---GYECRVLGKDIV 51 (122)
T ss_dssp TT-EEEEESSTTSEEEEEEEEEEETTTEEEEEETT---S-EEEEECCCEE
T ss_pred cccEEEEEEccCCcccCceEeecCCCCeEEEEecC---CccceeccCcEE
Confidence 8999999865444568999998545 799999996 543 34444444
No 42
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=49.10 E-value=63 Score=31.18 Aligned_cols=44 Identities=30% Similarity=0.476 Sum_probs=36.4
Q ss_pred cccCCCccCCCEEEEEcCC-CCCcccceEEEEecCeeEEEecCCC
Q 001272 712 TDLARPLYVGQRIIAVHPR-TREICDGSVLTVEHSRYRVQFDKRE 755 (1110)
Q Consensus 712 ~dIP~PL~VGqkV~A~hP~-trgL~dGtVlaVd~~~YRV~FDRpe 755 (1110)
......|.||+|+-|+.+. ...++-.+|..|.....+|.||--+
T Consensus 22 ~~~~~~F~vGmkLEavD~~~~~~i~vAtV~~v~g~~l~v~~dg~~ 66 (96)
T smart00561 22 DSPPNGFKVGMKLEAVDPRNPSLICVATVVEVKGYRLLLHFDGWD 66 (96)
T ss_pred CCccCcccCCCEEEEECCCCCceEEEEEEEEEECCEEEEEEccCC
Confidence 3345579999999999885 4578999999999889999999543
No 43
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=46.08 E-value=44 Score=29.87 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHc-----C------------CChHHHHHHHh-----cchHHHHHHHHhhhhhh
Q 001272 44 GPQWSKEELERFYEAYRKY-----G------------KDWKKIAAAVR-----NRTAEMVEALFTMNRAY 91 (1110)
Q Consensus 44 g~rWs~eEh~rFlea~r~y-----G------------k~WkkVa~~V~-----tRT~~qVrsly~~~k~~ 91 (1110)
.++||.+|.+-+++-+..| | +-|..|++.+. .||+.|++.-|.--|..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999988877 4 25999999884 89999999888765554
No 44
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=45.33 E-value=20 Score=40.39 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=30.5
Q ss_pred CCccCCCEEEEEcCCCCCcccceEEEEec---CeeEEEec
Q 001272 716 RPLYVGQRIIAVHPRTREICDGSVLTVEH---SRYRVQFD 752 (1110)
Q Consensus 716 ~PL~VGqkV~A~hP~trgL~dGtVlaVd~---~~YRV~FD 752 (1110)
.+|+.|+.|.|+.|.|-.+|.|.|.+.-. +.|-|-|.
T Consensus 197 ~~fpp~~~VLA~YP~TTcFY~aiVh~tp~d~s~~y~vlff 236 (264)
T KOG3038|consen 197 ALFPPGTIVLAVYPGTTCFYKAIVHSTPRDGSCDYYVLFF 236 (264)
T ss_pred cCCCCCCEEEEEcCCcceeeeeEeecCCCCCCCcceeeee
Confidence 47899999999999999999999998766 34555544
No 45
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=42.57 E-value=16 Score=44.94 Aligned_cols=45 Identities=27% Similarity=0.446 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhh
Q 001272 43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTM 87 (1110)
Q Consensus 43 lg~rWs~eEh~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsly~~ 87 (1110)
...+|+.+|-+.||.|+..+|-+..-|++.-..|+..||+.=|.+
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhh
Confidence 445999999999999999999999999999999999999998765
No 46
>KOG4485 consensus Uncharacterized conserved protein, contains ankyrin and FN3 repeats [General function prediction only]
Probab=35.90 E-value=18 Score=43.61 Aligned_cols=40 Identities=33% Similarity=0.462 Sum_probs=30.5
Q ss_pred CCCCCCcchhhHHHHHhhcCCCCCC------------cHHHHHHHHHHHHHH
Q 001272 652 LSHVPRLTRVEWGVIRSSLGRPRRF------------SEQFLKEEKEKLNQY 691 (1110)
Q Consensus 652 l~~~~rLTR~EW~~IRrsmGKPRRF------------S~aFL~EER~kLE~~ 691 (1110)
+..-+.+|+-||..|.|.---|=|+ |.+|+.-|-++|-.+
T Consensus 256 VRdN~HiTaEEWevihr~d~dplrlpldfsaqggdgas~a~aaTeaQ~lf~~ 307 (724)
T KOG4485|consen 256 VRDNPHITAEEWEVIHRIDMDPLRLPLDFSAQGGDGASEAFAATEAQELFHS 307 (724)
T ss_pred ecCCCccCHHHHHHHHHhcCCcccCcccccccCCCccccchhhHHHHHHHHH
Confidence 3344689999999999977777665 478999888877543
No 47
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=34.14 E-value=44 Score=40.97 Aligned_cols=40 Identities=28% Similarity=0.510 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHh
Q 001272 46 QWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFT 86 (1110)
Q Consensus 46 rWs~eEh~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsly~ 86 (1110)
-||.||-++.|.+.++..-.|.-|+..|| ||..|-.-.|.
T Consensus 61 ews~eederlLhlakl~p~qwrtIa~i~g-r~~~qc~eRy~ 100 (617)
T KOG0050|consen 61 EWSREEDERLLHLAKLEPTQWRTIADIMG-RTSQQCLERYN 100 (617)
T ss_pred hhhhhHHHHHHHHHHhcCCccchHHHHhh-hhHHHHHHHHH
Confidence 69999999999999999999999999998 78888776653
No 48
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=33.91 E-value=34 Score=33.37 Aligned_cols=24 Identities=21% Similarity=0.623 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHh
Q 001272 48 SKEELERFYEAYRKYGKDWKKIAAAVR 74 (1110)
Q Consensus 48 s~eEh~rFlea~r~yGk~WkkVa~~V~ 74 (1110)
|.++++.|-+-+ ||+||+++..+|
T Consensus 1 ~~~~~q~~~~nv---Gr~WK~laR~Lg 24 (90)
T cd08780 1 TPADQQHFAKSV---GKKWKPVGRSLQ 24 (90)
T ss_pred CHHHHHHHHHHH---hHHHHHHHHHHc
Confidence 567888888765 899999999999
No 49
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=30.72 E-value=21 Score=35.08 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=27.0
Q ss_pred HhhcCCCCCCCcchhhHHHHHhhcCCCCCCcHHHHH
Q 001272 647 LDHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFLK 682 (1110)
Q Consensus 647 L~e~gl~~~~rLTR~EW~~IRrsmGKPRRFS~aFL~ 682 (1110)
+.++...+=..|.+.||..||+.|-++++|...||.
T Consensus 60 F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~ 95 (113)
T PF10591_consen 60 FCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFR 95 (113)
T ss_dssp HHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHH
T ss_pred HhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444455679999999999999999999999985
No 50
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=28.89 E-value=33 Score=39.43 Aligned_cols=40 Identities=45% Similarity=0.859 Sum_probs=27.2
Q ss_pred HHHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhcccCcccccccceeee---eeccccccCCCCC
Q 001272 58 AYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAM---MTDHYGILAGSDG 120 (1110)
Q Consensus 58 a~r~yGk~WkkVa~~V~tRT~~qVrsly~~~k~~l~lpeg~as~~gliAm---mtdhy~~l~~s~S 120 (1110)
-|++|||.|| |+||.. +||+|| ++.=| |-+|+.++-.|.+
T Consensus 186 ~Y~kyGKh~~--------------EalFyt--H~LsLP-------~Flf~~~div~~~~~~~~se~ 228 (330)
T KOG1583|consen 186 TYQKYGKHWK--------------EALFYT--HFLSLP-------LFLFMGDDIVSHWRLAFKSES 228 (330)
T ss_pred HHHHhcCChH--------------HHHHHH--HHhccc-------hHHHhcchHHHHHHHHhcCcc
Confidence 3799999998 566654 489999 33333 4568887755543
No 51
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=28.84 E-value=1.1e+02 Score=28.99 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHhc
Q 001272 1045 HCVAALFMIQRCTERDFPPADVALVLDSAVTSLQPCCSQNLPVYAEIQKCMGIIRNQILAL 1105 (1110)
Q Consensus 1045 ~CVAtllmIq~ctErq~ppadVa~vlDsAv~sL~P~c~qNlpIy~eIq~cmg~IknQilAl 1105 (1110)
..|..|..|+.+.+-.||.++|+.+|+..- .....-++..+..|..||-.|
T Consensus 42 ~~l~~l~~I~~lr~~G~~l~eI~~~l~~~~----------~~~~~~l~~~~~~l~~~i~~l 92 (96)
T cd04788 42 ADIRRLHQIIALRRLGFSLREIGRALDGPD----------FDPLELLRRQLARLEEQLELA 92 (96)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHhCCC----------hhHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999998421 156777888888888888554
No 52
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=26.90 E-value=1.7e+02 Score=26.82 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHc----CC---------ChHHHHHHHh-----cchHHHHHHHHhhhh
Q 001272 46 QWSKEELERFYEAYRKY----GK---------DWKKIAAAVR-----NRTAEMVEALFTMNR 89 (1110)
Q Consensus 46 rWs~eEh~rFlea~r~y----Gk---------~WkkVa~~V~-----tRT~~qVrsly~~~k 89 (1110)
+||.++.+-|++.|... .+ .|..|+..+. ..|..||+..|..-|
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk 62 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLK 62 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 59999999998888443 33 3888888876 557889998877554
No 53
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=25.96 E-value=80 Score=37.64 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC----------------hHHHHHHHh-----cchHHHHHHHH
Q 001272 43 LGPQWSKEELERFYEAYRKYGKD----------------WKKIAAAVR-----NRTAEMVEALF 85 (1110)
Q Consensus 43 lg~rWs~eEh~rFlea~r~yGk~----------------WkkVa~~V~-----tRT~~qVrsly 85 (1110)
.-+-||.+=-+.|.|||+.|... =.-||.+|. |||.-||-||-
T Consensus 75 aegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHI 138 (455)
T KOG3841|consen 75 AEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHI 138 (455)
T ss_pred cccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 56799999999999999986431 145777776 89999998873
No 54
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=25.63 E-value=59 Score=36.61 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=33.8
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEec--CeeEEEecCCC
Q 001272 717 PLYVGQRIIAVHPRTREICDGSVLTVEH--SRYRVQFDKRE 755 (1110)
Q Consensus 717 PL~VGqkV~A~hP~trgL~dGtVlaVd~--~~YRV~FDRpe 755 (1110)
-+.||+||+|.++..+.+|+.+|..+.. .+--|.|+-.+
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f~s~~ 130 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIFASYG 130 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccCCCCceeEEEeecc
Confidence 4799999999999999999999999998 57788888543
No 55
>cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.51 E-value=1.4e+02 Score=27.76 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHhc
Q 001272 1045 HCVAALFMIQRCTERDFPPADVALVLDSAVTSLQPCCSQNLPVYAEIQKCMGIIRNQILAL 1105 (1110)
Q Consensus 1045 ~CVAtllmIq~ctErq~ppadVa~vlDsAv~sL~P~c~qNlpIy~eIq~cmg~IknQilAl 1105 (1110)
.+|..+..|+.+....+|+++|+++|+. .-++.| .--++.-|+.++.-|++||=.|
T Consensus 41 ~dv~~l~~i~~l~~~g~~~~~i~~~l~~---~~~~~~--~~~~~~~~~~~~~~l~~~~~~l 96 (100)
T cd00592 41 EDLERLRLIRRLRELGLSLKEIRELLDA---RDEELS--LAALLALLDEKLAELEEKIARL 96 (100)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHhc---ccccch--HHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999974 234444 3345777888888888887544
No 56
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=23.24 E-value=1.4e+02 Score=28.52 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=31.9
Q ss_pred cCCCccCCCEEEEEcCCCCCcccceEEEEecCeeEEEec
Q 001272 714 LARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFD 752 (1110)
Q Consensus 714 IP~PL~VGqkV~A~hP~trgL~dGtVlaVd~~~YRV~FD 752 (1110)
+-++|.+|++|..+-.+.+| ..|.|+.|++..++|.-+
T Consensus 5 ~~~~I~~GD~V~Vi~G~dKG-K~G~V~~V~~~~~~V~Ve 42 (83)
T CHL00141 5 KKMHVKIGDTVKIISGSDKG-KIGEVLKIIKKSNKVIVK 42 (83)
T ss_pred eeCcccCCCEEEEeEcCCCC-cEEEEEEEEcCCCEEEEc
Confidence 44689999999999877666 459999999998888777
No 57
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=22.54 E-value=93 Score=38.40 Aligned_cols=45 Identities=33% Similarity=0.583 Sum_probs=40.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHhcchHHHHHHHHh
Q 001272 42 MLGPQWSKEELERFYEAYRKYGK-DWKKIAAAVRNRTAEMVEALFT 86 (1110)
Q Consensus 42 ~lg~rWs~eEh~rFlea~r~yGk-~WkkVa~~V~tRT~~qVrsly~ 86 (1110)
.-|+-|+.-|-+=.--|..+||+ .|.+|+..+..+|..|-++-|.
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~ 50 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWE 50 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHH
Confidence 34789998888888889999999 6999999999999999988765
No 58
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=22.34 E-value=1.9e+02 Score=30.73 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=49.0
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCC-hHHHHHHHh-----------cchHHHHHHHHhhhhhhcc---cCccccc
Q 001272 36 KRKLSDMLGPQWSKEELERFYEAYRKYGKD-WKKIAAAVR-----------NRTAEMVEALFTMNRAYLS---LPEGTAS 100 (1110)
Q Consensus 36 k~klsd~lg~rWs~eEh~rFlea~r~yGk~-WkkVa~~V~-----------tRT~~qVrsly~~~k~~l~---lpeg~as 100 (1110)
+.++..+--=+|+++++++||.-++ +++ |..+-.++. .--+...|+|+......-. .| .|
T Consensus 33 gf~i~~~k~~~~s~~~~e~~Y~~~~--~~~Ff~~Lv~~m~SGPvvamv~~g~~~V~~~r~llG~t~~~~a~~~~p---gs 107 (156)
T KOG0888|consen 33 GFKIVALKLVQLSKELLEEHYSDLK--SKPFFPGLVEYMSSGPVVAMVLEGDNVVQYWRALLGPTNPAAARAAAP---GS 107 (156)
T ss_pred CcchhhheeecCCHHHHHHHHHHhc--CCccHHHHHHHHhcCcceehhhcCCCHHHHHHHHhCCCCcccccccCC---CC
Confidence 4444443344899999999999987 885 888776665 2233444555443332222 11 13
Q ss_pred ccceeeeeeccccccCCCCCCc
Q 001272 101 VVGLIAMMTDHYGILAGSDGEQ 122 (1110)
Q Consensus 101 ~~gliAmmtdhy~~l~~s~Se~ 122 (1110)
-=|+.+ +.|+-|++.||||..
T Consensus 108 ir~~f~-~~~~rn~~HgSDs~~ 128 (156)
T KOG0888|consen 108 IRGDFG-VDDGRNSIHGSDSVE 128 (156)
T ss_pred eeeeec-ccCCCCccccCCcHH
Confidence 334444 455559999999864
No 59
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=21.18 E-value=2.3e+02 Score=25.36 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=25.2
Q ss_pred ccCCCEEEEEc--CCCCCc-ccceEEEEecC-eeEEEecC
Q 001272 718 LYVGQRIIAVH--PRTREI-CDGSVLTVEHS-RYRVQFDK 753 (1110)
Q Consensus 718 L~VGqkV~A~h--P~trgL-~dGtVlaVd~~-~YRV~FDR 753 (1110)
|.+|++|-.+- ...++- |.|+|+....+ +|.|+|+.
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~~~~V~Y~~ 40 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDDKYLVEYDD 40 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT-EEEEEETT
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCcEEEEEECC
Confidence 57899998864 234444 89999999998 99999963
No 60
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=21.17 E-value=53 Score=37.00 Aligned_cols=46 Identities=30% Similarity=0.437 Sum_probs=39.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCC-ChHHHHH-HHhcchHHHHHHHHhhh
Q 001272 41 DMLGPQWSKEELERFYEAYRKYGK-DWKKIAA-AVRNRTAEMVEALFTMN 88 (1110)
Q Consensus 41 d~lg~rWs~eEh~rFlea~r~yGk-~WkkVa~-~V~tRT~~qVrsly~~~ 88 (1110)
.+.+-.|+..+|..|.-++..||+ +|.+++. .+-+|+-.++.++ ++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~--a~ 208 (335)
T KOG0724|consen 161 RRKGTPVTERERKLVLLALKKDGKIDWRKISQNVEKERTPEQVASH--AQ 208 (335)
T ss_pred hhccchhHHHHHHHHHhhhcccccccceechhhhhhhhcchhhhhh--hh
Confidence 457779999999999999999999 8999655 5559999999998 55
No 61
>smart00426 TEA TEA domain.
Probab=21.12 E-value=1.3e+02 Score=28.29 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-ChH
Q 001272 44 GPQWSKEELERFYEAYRKYGK-DWK 67 (1110)
Q Consensus 44 g~rWs~eEh~rFlea~r~yGk-~Wk 67 (1110)
.+-|+.+=-+.|++||+.|-+ .++
T Consensus 3 ~~vWp~~lE~Af~~aL~~~~~~g~~ 27 (68)
T smart00426 3 EGVWSPDIEQAFQEALAIYPPCGRR 27 (68)
T ss_pred CCcCcHHHHHHHHHHHHHcCccCcc
Confidence 468997777789999999987 344
No 62
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=20.84 E-value=1.6e+02 Score=29.56 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=24.4
Q ss_pred CccCCCEEEEEcCCCCCcccceEEEEec--------CeeEEEecCCCCceeEec
Q 001272 717 PLYVGQRIIAVHPRTREICDGSVLTVEH--------SRYRVQFDKRELGIEFVQ 762 (1110)
Q Consensus 717 PL~VGqkV~A~hP~trgL~dGtVlaVd~--------~~YRV~FDRpeLGv~~Vp 762 (1110)
-|.+|++|+- ..||| |+|..++. ...+|+|+|..+.....|
T Consensus 38 ~Lk~GD~VvT----~gGi~-G~V~~I~d~~v~leia~gv~i~~~r~AI~~v~~p 86 (109)
T PRK05886 38 SLQPGDRVHT----TSGLQ-ATIVGITDDTVDLEIAPGVVTTWMKLAVRDRILP 86 (109)
T ss_pred hcCCCCEEEE----CCCeE-EEEEEEeCCEEEEEECCCeEEEEEhhheeeecCC
Confidence 4688999985 23443 66666554 346777777654433333
No 63
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=20.61 E-value=1.9e+02 Score=23.99 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhh
Q 001272 53 ERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNR 89 (1110)
Q Consensus 53 ~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsly~~~k 89 (1110)
..-+.-+...|.+|+.||+.+| .|...|+.+++--+
T Consensus 16 r~i~~l~~~~g~s~~eIa~~l~-~s~~~v~~~l~ra~ 51 (54)
T PF08281_consen 16 REIFLLRYFQGMSYAEIAEILG-ISESTVKRRLRRAR 51 (54)
T ss_dssp HHHHHHHHTS---HHHHHHHCT-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 3344455678999999999997 78888888865444
Done!