Query 001274
Match_columns 1109
No_of_seqs 1113 out of 6983
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 19:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.2E-97 8E-102 940.0 45.9 686 24-718 4-750 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.9E-77 1.7E-81 753.9 31.6 604 77-687 79-741 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-64 6.6E-69 633.2 45.7 589 77-691 9-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-63 1.2E-67 621.7 37.7 585 99-711 7-624 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.7E-58 5.9E-63 571.3 36.9 533 76-617 16-564 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.7E-58 5.7E-63 571.4 34.9 534 100-691 16-565 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 4.7E-58 1.6E-62 586.4 36.8 559 100-718 8-590 (844)
8 4eco_A Uncharacterized protein 100.0 5.6E-59 1.9E-63 575.2 23.6 487 31-566 29-601 (636)
9 3vq2_A TLR4, TOLL-like recepto 100.0 3.6E-57 1.2E-61 559.5 35.0 539 59-617 4-562 (606)
10 4ecn_A Leucine-rich repeat pro 100.0 1.7E-57 5.7E-62 569.6 28.4 508 30-589 267-864 (876)
11 3j0a_A TOLL-like receptor 5; m 100.0 9.5E-57 3.2E-61 574.3 35.5 533 76-666 8-564 (844)
12 3vq2_A TLR4, TOLL-like recepto 100.0 3.4E-57 1.2E-61 559.7 29.2 539 121-692 12-564 (606)
13 2z63_A TOLL-like receptor 4, v 100.0 2.1E-51 7E-56 504.4 29.6 512 77-618 12-536 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 5.3E-51 1.8E-55 500.7 33.2 488 73-593 29-535 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 4.2E-51 1.4E-55 499.1 27.9 491 61-617 3-514 (549)
16 4eco_A Uncharacterized protein 100.0 1.4E-50 4.8E-55 500.2 24.2 463 120-613 81-600 (636)
17 2z81_A CD282 antigen, TOLL-lik 100.0 7E-50 2.4E-54 488.2 27.4 494 120-692 5-516 (549)
18 3omv_A RAF proto-oncogene seri 100.0 3E-50 1E-54 444.2 20.3 263 802-1084 36-302 (307)
19 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-48 4.9E-53 485.6 37.6 555 46-615 8-582 (635)
20 4asz_A BDNF/NT-3 growth factor 100.0 8.5E-50 2.9E-54 440.9 18.6 262 802-1085 13-292 (299)
21 4aoj_A High affinity nerve gro 100.0 3E-49 1E-53 442.8 22.0 260 802-1083 41-320 (329)
22 4gt4_A Tyrosine-protein kinase 100.0 2.1E-49 7E-54 439.8 19.6 256 803-1079 27-303 (308)
23 4b9d_A Serine/threonine-protei 100.0 6.8E-50 2.3E-54 447.3 15.4 256 802-1079 24-280 (350)
24 4fih_A Serine/threonine-protei 100.0 1.3E-48 4.4E-53 436.2 22.4 254 802-1080 74-328 (346)
25 4g3f_A NF-kappa-beta-inducing 100.0 1.3E-48 4.3E-53 435.1 22.0 257 802-1086 58-320 (336)
26 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-48 4.5E-53 473.4 23.6 456 123-617 3-485 (520)
27 4ecn_A Leucine-rich repeat pro 100.0 2.8E-48 9.5E-53 486.2 25.7 377 226-613 435-864 (876)
28 3fpq_A Serine/threonine-protei 100.0 1.4E-48 4.7E-53 427.8 20.0 250 805-1079 29-286 (290)
29 2z7x_B TOLL-like receptor 1, v 100.0 5.9E-48 2E-52 467.7 23.7 450 76-591 4-483 (520)
30 4ase_A Vascular endothelial gr 100.0 1E-48 3.5E-53 441.9 15.3 273 792-1084 54-349 (353)
31 3hyh_A Carbon catabolite-derep 100.0 9.5E-48 3.3E-52 417.2 21.7 252 802-1080 13-267 (275)
32 4aw0_A HPDK1, 3-phosphoinositi 100.0 2.1E-48 7.2E-53 427.9 16.4 251 802-1076 32-285 (311)
33 4fie_A Serine/threonine-protei 100.0 1.6E-47 5.3E-52 438.0 23.0 254 802-1080 151-405 (423)
34 3ubd_A Ribosomal protein S6 ki 100.0 5.1E-48 1.7E-52 425.2 15.7 252 802-1078 24-284 (304)
35 3hmm_A TGF-beta receptor type- 100.0 2.8E-47 9.5E-52 424.2 21.8 268 802-1084 3-299 (303)
36 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-46 8.3E-51 465.6 31.0 532 128-690 39-584 (635)
37 4g31_A Eukaryotic translation 100.0 3.7E-46 1.3E-50 412.7 16.5 254 802-1078 5-282 (299)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-45 9.5E-50 448.0 24.7 459 99-617 34-514 (562)
39 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.6E-45 1.2E-49 447.0 23.2 460 74-593 33-514 (562)
40 4b99_A Mitogen-activated prote 100.0 5E-44 1.7E-48 410.8 20.9 269 802-1081 54-350 (398)
41 1ogq_A PGIP-2, polygalacturona 100.0 4.7E-44 1.6E-48 402.3 17.7 295 27-326 1-306 (313)
42 1jl5_A Outer protein YOPM; leu 100.0 1.2E-42 4E-47 410.5 24.2 426 161-691 5-434 (454)
43 1jl5_A Outer protein YOPM; leu 100.0 1.3E-42 4.4E-47 410.1 24.4 426 142-671 9-438 (454)
44 4f9c_A Cell division cycle 7-r 100.0 3.4E-43 1.2E-47 399.9 17.6 198 800-1010 19-250 (361)
45 3v5w_A G-protein coupled recep 100.0 2.5E-42 8.6E-47 411.5 22.3 254 802-1079 189-453 (689)
46 3v47_A TOLL-like receptor 5B a 100.0 2E-41 6.8E-46 403.3 25.5 363 241-617 31-412 (455)
47 3uto_A Twitchin; kinase, muscl 100.0 6.7E-42 2.3E-46 413.1 21.6 254 802-1078 157-413 (573)
48 3v47_A TOLL-like receptor 5B a 100.0 3E-41 1E-45 401.7 24.2 386 291-695 13-417 (455)
49 3uim_A Brassinosteroid insensi 100.0 4.8E-41 1.6E-45 381.2 21.9 288 790-1081 18-310 (326)
50 2qkw_B Protein kinase; three-h 100.0 1.3E-40 4.6E-45 376.5 23.3 281 796-1084 33-317 (321)
51 3p86_A Serine/threonine-protei 100.0 4E-41 1.4E-45 377.9 17.1 264 801-1085 36-301 (309)
52 3fxz_A Serine/threonine-protei 100.0 3.6E-40 1.2E-44 368.2 22.8 255 801-1080 19-274 (297)
53 2nru_A Interleukin-1 receptor- 100.0 1.2E-39 4.2E-44 366.2 27.1 285 790-1082 13-306 (307)
54 3fe3_A MAP/microtubule affinit 100.0 2.5E-40 8.4E-45 374.0 21.5 254 801-1080 14-269 (328)
55 3zgw_A Maternal embryonic leuc 100.0 4.4E-40 1.5E-44 373.9 23.2 257 801-1082 9-267 (347)
56 2c30_A Serine/threonine-protei 100.0 4E-39 1.4E-43 363.9 25.8 273 784-1081 17-300 (321)
57 4hcu_A Tyrosine-protein kinase 100.0 7.2E-40 2.4E-44 360.6 19.2 257 802-1083 10-267 (269)
58 3niz_A Rhodanese family protei 100.0 1.2E-39 4.2E-44 366.5 20.9 270 802-1079 21-304 (311)
59 3soc_A Activin receptor type-2 100.0 1.3E-39 4.3E-44 368.4 21.1 264 802-1083 24-319 (322)
60 3kul_A Ephrin type-A receptor 100.0 1.2E-39 4.2E-44 368.8 20.6 262 802-1086 49-317 (325)
61 2yab_A Death-associated protei 100.0 4.6E-39 1.6E-43 367.9 25.4 255 802-1078 12-275 (361)
62 3s95_A LIMK-1, LIM domain kina 100.0 1.6E-39 5.3E-44 365.9 21.2 258 802-1086 10-286 (310)
63 2psq_A Fibroblast growth facto 100.0 9.5E-40 3.3E-44 376.2 18.9 262 802-1084 81-366 (370)
64 4euu_A Serine/threonine-protei 100.0 3.1E-39 1.1E-43 365.0 22.3 274 802-1081 9-308 (319)
65 3lb7_A RAF proto-oncogene seri 100.0 4.3E-39 1.5E-43 361.2 23.1 264 802-1085 36-303 (307)
66 4eqm_A Protein kinase; transfe 100.0 2.9E-39 1E-43 360.4 21.3 264 802-1084 11-277 (294)
67 1tki_A Titin; serine kinase, m 100.0 4.4E-39 1.5E-43 363.2 22.7 257 801-1081 4-263 (321)
68 3sxs_A Cytoplasmic tyrosine-pr 100.0 1.4E-39 4.7E-44 358.1 18.0 258 801-1083 7-265 (268)
69 3bz5_A Internalin-J, INLJ; leu 100.0 4E-39 1.4E-43 380.6 22.8 378 169-622 19-396 (457)
70 3bz5_A Internalin-J, INLJ; leu 100.0 7.2E-39 2.4E-43 378.4 24.4 367 226-669 28-394 (457)
71 1ob3_A PFPK5, cell division co 100.0 1.4E-39 4.9E-44 362.0 17.4 270 802-1078 2-283 (288)
72 3tki_A Serine/threonine-protei 100.0 2.2E-39 7.4E-44 366.2 18.9 257 802-1080 7-266 (323)
73 1o6l_A RAC-beta serine/threoni 100.0 5.8E-39 2E-43 363.7 22.1 253 802-1079 5-264 (337)
74 3gen_A Tyrosine-protein kinase 100.0 1.4E-39 4.8E-44 361.1 16.6 259 801-1084 23-282 (283)
75 2bdw_A Hypothetical protein K1 100.0 6.2E-39 2.1E-43 368.0 22.4 257 801-1079 28-288 (362)
76 2qol_A Ephrin receptor; recept 100.0 3.2E-39 1.1E-43 372.0 19.7 260 802-1084 45-311 (373)
77 2eva_A TAK1 kinase - TAB1 chim 100.0 8.6E-39 3E-43 358.9 22.6 260 802-1087 8-268 (307)
78 3soa_A Calcium/calmodulin-depe 100.0 8.2E-39 2.8E-43 375.4 23.2 259 800-1079 9-271 (444)
79 3q4u_A Activin receptor type-1 100.0 9.2E-39 3.2E-43 358.0 21.9 264 801-1080 7-300 (301)
80 2y0a_A Death-associated protei 100.0 1.7E-38 5.7E-43 359.6 23.8 255 802-1078 11-274 (326)
81 3o0g_A Cell division protein k 100.0 8.5E-39 2.9E-43 356.5 20.5 268 802-1079 2-286 (292)
82 3cbl_A C-FES, proto-oncogene t 100.0 1.2E-39 4E-44 376.9 13.4 259 802-1083 114-375 (377)
83 3uc3_A Serine/threonine-protei 100.0 1.1E-38 3.8E-43 366.0 21.3 259 801-1082 19-281 (361)
84 1csn_A Casein kinase-1; phosph 100.0 3.5E-38 1.2E-42 352.7 24.8 263 802-1086 10-287 (298)
85 3p1a_A MYT1 kinase, membrane-a 100.0 1.9E-38 6.4E-43 356.9 22.6 249 802-1078 57-307 (311)
86 3vhe_A Vascular endothelial gr 100.0 1.8E-39 6.1E-44 373.6 14.2 272 792-1083 12-356 (359)
87 3gni_B Strad alpha; kinase fol 100.0 7.2E-39 2.5E-43 372.5 19.4 275 801-1079 24-337 (389)
88 4aw2_A Serine/threonine-protei 100.0 5.8E-40 2E-44 383.6 10.1 267 796-1080 68-343 (437)
89 2izr_A Casein kinase I isoform 100.0 1.6E-38 5.5E-43 360.9 21.8 261 802-1084 9-283 (330)
90 1o6v_A Internalin A; bacterial 100.0 6.9E-38 2.4E-42 373.2 28.3 345 239-614 45-389 (466)
91 3qup_A Tyrosine-protein kinase 100.0 4.9E-39 1.7E-43 364.1 17.0 276 801-1096 22-312 (323)
92 3h4j_B AMPK kdaid, SNF1-like p 100.0 3.9E-39 1.3E-43 364.7 15.9 254 801-1081 8-264 (336)
93 3v8s_A RHO-associated protein 100.0 2.6E-39 9E-44 375.2 14.7 263 797-1080 64-334 (410)
94 1qcf_A Haematopoetic cell kina 100.0 2.7E-39 9.2E-44 383.2 15.1 258 801-1083 187-445 (454)
95 3txo_A PKC-L, NPKC-ETA, protei 100.0 5.2E-39 1.8E-43 366.6 16.3 254 801-1079 22-284 (353)
96 2pmi_A Negative RE, cyclin-dep 100.0 1E-38 3.4E-43 360.2 18.4 274 801-1083 4-301 (317)
97 3t9t_A Tyrosine-protein kinase 100.0 1.2E-38 4E-43 350.4 17.9 257 802-1083 8-265 (267)
98 3ork_A Serine/threonine protei 100.0 1.8E-38 6.2E-43 357.2 19.9 259 802-1080 12-278 (311)
99 4dc2_A Protein kinase C IOTA t 100.0 2.4E-38 8.3E-43 365.0 21.3 258 801-1079 51-322 (396)
100 3kmu_A ILK, integrin-linked ki 100.0 1.1E-38 3.9E-43 351.3 17.8 254 802-1082 10-270 (271)
101 1fot_A TPK1 delta, CAMP-depend 100.0 3.1E-38 1.1E-42 355.1 21.7 250 802-1079 6-262 (318)
102 4fr4_A YANK1, serine/threonine 100.0 2.8E-38 9.4E-43 363.3 21.5 254 802-1078 15-274 (384)
103 1o6v_A Internalin A; bacterial 100.0 1.5E-37 5.3E-42 370.2 28.6 346 142-566 44-389 (466)
104 3kk8_A Calcium/calmodulin depe 100.0 3E-38 1E-42 350.7 20.9 259 801-1081 5-267 (284)
105 3kex_A Receptor tyrosine-prote 100.0 1.6E-38 5.3E-43 360.1 19.0 259 802-1084 13-278 (325)
106 3op5_A Serine/threonine-protei 100.0 9.3E-39 3.2E-43 367.9 17.4 274 801-1087 34-334 (364)
107 3qd2_B Eukaryotic translation 100.0 2.9E-38 1E-42 359.2 21.0 254 801-1077 5-327 (332)
108 3c0i_A Peripheral plasma membr 100.0 2.2E-38 7.6E-43 362.4 20.0 260 802-1080 24-291 (351)
109 1mp8_A Focal adhesion kinase 1 100.0 1.4E-38 4.8E-43 352.7 17.7 258 802-1083 15-277 (281)
110 1rjb_A FL cytokine receptor; k 100.0 9.2E-39 3.1E-43 365.3 16.7 266 800-1085 43-337 (344)
111 3og7_A AKAP9-BRAF fusion prote 100.0 1.3E-38 4.6E-43 354.3 17.6 261 802-1082 24-288 (289)
112 3tt0_A Basic fibroblast growth 100.0 3E-38 1E-42 365.9 21.0 266 802-1088 69-358 (382)
113 3mdy_A Bone morphogenetic prot 100.0 1.2E-37 4E-42 355.1 25.5 269 798-1085 33-334 (337)
114 1opk_A P150, C-ABL, proto-onco 100.0 7.2E-39 2.5E-43 383.0 15.9 257 802-1082 220-478 (495)
115 3l9p_A Anaplastic lymphoma kin 100.0 7.1E-39 2.4E-43 368.7 15.2 262 802-1084 71-347 (367)
116 4f0f_A Serine/threonine-protei 100.0 7.6E-38 2.6E-42 348.0 23.0 253 802-1079 19-286 (287)
117 4eut_A Serine/threonine-protei 100.0 1.5E-38 5.3E-43 370.0 18.1 276 802-1083 9-310 (396)
118 1t46_A HOMO sapiens V-KIT hard 100.0 1.6E-38 5.6E-43 358.1 17.4 263 802-1084 23-309 (313)
119 1luf_A Muscle-specific tyrosin 100.0 2.5E-38 8.6E-43 361.6 19.1 265 800-1085 45-338 (343)
120 3a8x_A Protein kinase C IOTA t 100.0 5.7E-38 1.9E-42 357.3 21.8 257 802-1079 9-279 (345)
121 1kob_A Twitchin; kinase, intra 100.0 6.2E-38 2.1E-42 361.8 22.4 255 802-1079 51-308 (387)
122 2zv2_A Calcium/calmodulin-depe 100.0 6.4E-38 2.2E-42 350.5 21.7 254 801-1078 12-295 (298)
123 1rdq_E PKA C-alpha, CAMP-depen 100.0 4.3E-38 1.5E-42 358.8 20.5 250 802-1079 41-297 (350)
124 2id5_A Lingo-1, leucine rich r 100.0 6.6E-38 2.3E-42 375.0 23.0 344 364-711 15-358 (477)
125 3poz_A Epidermal growth factor 100.0 1.5E-38 5.2E-43 360.4 16.5 258 802-1083 15-279 (327)
126 1xjd_A Protein kinase C, theta 100.0 1.5E-38 5.2E-43 361.2 16.5 254 800-1078 15-272 (345)
127 3ugc_A Tyrosine-protein kinase 100.0 1.6E-38 5.5E-43 354.9 16.3 264 802-1084 10-293 (295)
128 2ivs_A Proto-oncogene tyrosine 100.0 3.1E-38 1.1E-42 356.0 18.7 261 802-1083 23-312 (314)
129 4agu_A Cyclin-dependent kinase 100.0 1.9E-38 6.5E-43 357.2 17.0 270 802-1079 3-288 (311)
130 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 1.7E-38 5.9E-43 375.8 17.4 258 802-1084 184-442 (452)
131 2vd5_A DMPK protein; serine/th 100.0 6.9E-39 2.4E-43 371.9 13.6 266 796-1080 55-332 (412)
132 3fdn_A Serine/threonine-protei 100.0 6.9E-38 2.4E-42 346.7 20.7 256 801-1083 8-265 (279)
133 2i1m_A Macrophage colony-stimu 100.0 8.2E-39 2.8E-43 364.0 13.6 264 800-1083 44-327 (333)
134 2a2a_A Death-associated protei 100.0 1.5E-37 5.2E-42 351.4 23.7 255 802-1078 12-275 (321)
135 2w4o_A Calcium/calmodulin-depe 100.0 6.6E-38 2.3E-42 358.0 20.9 254 801-1079 52-309 (349)
136 3dtc_A Mitogen-activated prote 100.0 1.1E-38 3.9E-43 351.4 14.1 251 802-1079 7-270 (271)
137 2h34_A Serine/threonine-protei 100.0 1.2E-37 4.1E-42 350.1 22.4 264 801-1085 33-299 (309)
138 2i0e_A Protein kinase C-beta I 100.0 4.9E-38 1.7E-42 358.2 19.5 253 801-1078 19-279 (353)
139 1k9a_A Carboxyl-terminal SRC k 100.0 3.7E-38 1.3E-42 372.6 19.2 253 801-1083 192-446 (450)
140 2y94_A 5'-AMP-activated protei 100.0 8E-38 2.7E-42 369.3 21.7 253 802-1080 16-271 (476)
141 3a62_A Ribosomal protein S6 ki 100.0 5.9E-38 2E-42 355.2 19.8 253 802-1079 17-280 (327)
142 3ttj_A Mitogen-activated prote 100.0 4E-38 1.4E-42 372.8 19.0 264 801-1079 61-359 (464)
143 2eue_A Carbon catabolite derep 100.0 9.5E-38 3.2E-42 344.8 20.7 252 802-1080 13-267 (275)
144 3kn6_A Ribosomal protein S6 ki 100.0 6.9E-38 2.4E-42 354.2 19.9 252 807-1080 16-275 (325)
145 2x4f_A Myosin light chain kina 100.0 9.6E-38 3.3E-42 359.4 20.7 251 807-1080 94-347 (373)
146 3hko_A Calcium/calmodulin-depe 100.0 5.8E-38 2E-42 358.8 18.6 268 797-1081 21-336 (345)
147 1qpc_A LCK kinase; alpha beta 100.0 3.9E-38 1.3E-42 348.7 16.6 259 802-1085 13-272 (279)
148 2qr7_A Ribosomal protein S6 ki 100.0 6E-38 2.1E-42 356.6 18.6 257 801-1081 21-283 (342)
149 1p4o_A Insulin-like growth fac 100.0 1.6E-38 5.5E-43 359.7 13.5 265 798-1083 21-300 (322)
150 3f3z_A Calcium/calmodulin-depe 100.0 2.7E-37 9.1E-42 341.6 22.9 256 801-1081 8-267 (277)
151 3dbq_A Dual specificity protei 100.0 4E-38 1.4E-42 359.5 16.7 258 801-1081 8-279 (343)
152 3g33_A Cell division protein k 100.0 6.5E-38 2.2E-42 352.3 18.1 270 800-1079 7-300 (308)
153 3lxl_A Tyrosine-protein kinase 100.0 5.8E-39 2E-43 364.1 9.6 277 802-1097 23-318 (327)
154 4hgt_A Casein kinase I isoform 100.0 2.1E-37 7.2E-42 346.0 22.1 264 800-1086 7-284 (296)
155 1nxk_A MAP kinase-activated pr 100.0 1.4E-37 4.9E-42 361.6 21.4 254 802-1081 61-327 (400)
156 3oz6_A Mitogen-activated prote 100.0 3.4E-38 1.2E-42 366.5 16.2 269 800-1079 7-332 (388)
157 3lm5_A Serine/threonine-protei 100.0 4.9E-38 1.7E-42 356.2 17.0 266 795-1080 21-292 (327)
158 3kfa_A Tyrosine-protein kinase 100.0 4.4E-38 1.5E-42 350.1 16.3 259 801-1083 12-272 (288)
159 3dls_A PAS domain-containing s 100.0 3.7E-38 1.3E-42 357.9 16.0 248 800-1079 22-278 (335)
160 2xir_A Vascular endothelial gr 100.0 3.2E-38 1.1E-42 356.2 15.3 272 793-1084 18-312 (316)
161 1mqb_A Ephrin type-A receptor 100.0 1.5E-37 5.2E-42 353.0 20.9 262 802-1086 44-313 (333)
162 3gbz_A Kinase, CMGC CDK; ssgci 100.0 3.3E-38 1.1E-42 357.9 15.0 269 800-1079 32-322 (329)
163 2acx_A G protein-coupled recep 100.0 8.4E-38 2.9E-42 373.3 19.2 258 802-1079 184-448 (576)
164 2r5t_A Serine/threonine-protei 100.0 1.3E-37 4.6E-42 357.1 19.9 251 802-1077 38-295 (373)
165 4ejn_A RAC-alpha serine/threon 100.0 8.4E-38 2.9E-42 369.9 18.7 253 802-1079 148-408 (446)
166 2pvf_A Fibroblast growth facto 100.0 1.3E-37 4.4E-42 354.0 19.5 264 802-1086 35-322 (334)
167 3cc6_A Protein tyrosine kinase 100.0 1E-37 3.6E-42 345.7 18.2 259 801-1083 11-274 (281)
168 3brb_A Proto-oncogene tyrosine 100.0 7.4E-38 2.5E-42 352.8 17.2 267 800-1086 32-312 (313)
169 1vzo_A Ribosomal protein S6 ki 100.0 4E-38 1.4E-42 360.8 15.3 259 802-1080 54-326 (355)
170 3gxj_A TGF-beta receptor type- 100.0 4.2E-39 1.4E-43 361.1 6.9 266 802-1084 3-299 (303)
171 2zmd_A Dual specificity protei 100.0 1E-37 3.5E-42 361.7 18.8 257 802-1081 56-326 (390)
172 1u59_A Tyrosine-protein kinase 100.0 1.3E-37 4.6E-42 345.9 18.7 265 802-1090 9-280 (287)
173 3g2f_A Bone morphogenetic prot 100.0 7.5E-38 2.6E-42 356.5 16.9 268 802-1087 13-323 (336)
174 3cok_A Serine/threonine-protei 100.0 5.6E-38 1.9E-42 347.3 15.4 255 801-1079 10-266 (278)
175 2wqm_A Serine/threonine-protei 100.0 2.7E-37 9.1E-42 347.7 21.1 271 801-1089 31-304 (310)
176 4fvq_A Tyrosine-protein kinase 100.0 4.8E-38 1.6E-42 350.0 14.8 251 802-1082 8-275 (289)
177 3uzp_A CKI-delta, CKID, casein 100.0 3.7E-37 1.3E-41 344.1 22.0 264 801-1086 8-284 (296)
178 1t4h_A Serine/threonine-protei 100.0 2.1E-37 7.2E-42 344.9 19.9 252 802-1078 26-285 (290)
179 2rku_A Serine/threonine-protei 100.0 4.2E-37 1.4E-41 343.2 22.4 255 802-1081 15-271 (294)
180 3bhy_A Death-associated protei 100.0 5.1E-37 1.7E-41 340.5 22.8 256 802-1079 5-269 (283)
181 3lzb_A Epidermal growth factor 100.0 7E-38 2.4E-42 354.7 15.8 258 802-1083 15-279 (327)
182 3lxp_A Non-receptor tyrosine-p 100.0 2.3E-38 7.9E-43 357.5 11.8 264 804-1087 33-315 (318)
183 2xrw_A Mitogen-activated prote 100.0 2.9E-37 1E-41 356.1 21.3 264 802-1080 25-323 (371)
184 2v62_A Serine/threonine-protei 100.0 9.8E-38 3.4E-42 356.5 17.1 271 802-1086 37-332 (345)
185 4e5w_A Tyrosine-protein kinase 100.0 1.3E-37 4.4E-42 348.8 17.8 262 802-1081 21-301 (302)
186 3lij_A Calcium/calmodulin depe 100.0 2.2E-37 7.6E-42 371.0 20.9 256 802-1080 37-296 (494)
187 3c1x_A Hepatocyte growth facto 100.0 1.2E-37 3.9E-42 358.5 17.6 260 803-1085 90-358 (373)
188 4aaa_A Cyclin-dependent kinase 100.0 4.2E-38 1.4E-42 357.6 13.6 271 802-1080 25-311 (331)
189 3mtl_A Cell division protein k 100.0 9.8E-38 3.4E-42 353.2 16.5 270 802-1082 2-288 (324)
190 1u5q_A Serine/threonine protei 100.0 7.5E-38 2.6E-42 357.0 15.6 253 802-1081 54-311 (348)
191 2yex_A Serine/threonine-protei 100.0 3.5E-37 1.2E-41 340.5 20.5 256 801-1078 6-264 (276)
192 3sv0_A Casein kinase I-like; t 100.0 7.9E-37 2.7E-41 361.4 24.8 262 801-1083 6-279 (483)
193 3pls_A Macrophage-stimulating 100.0 2.8E-37 9.4E-42 345.4 19.8 263 803-1087 22-292 (298)
194 3c4z_A Rhodopsin kinase; Ser/T 100.0 2.4E-37 8.3E-42 368.9 20.5 259 802-1078 185-451 (543)
195 3mwu_A Calmodulin-domain prote 100.0 4.8E-37 1.6E-41 367.6 23.0 259 801-1082 21-283 (486)
196 3i6u_A CDS1, serine/threonine- 100.0 1.3E-37 4.5E-42 364.4 17.7 259 799-1079 132-403 (419)
197 2owb_A Serine/threonine-protei 100.0 5E-37 1.7E-41 349.2 21.8 255 802-1081 41-297 (335)
198 1b6c_B TGF-B superfamily recep 100.0 7.1E-37 2.4E-41 349.4 23.2 271 797-1084 37-338 (342)
199 1ua2_A CAK, cell division prot 100.0 1.8E-37 6.3E-42 354.4 18.2 272 800-1081 8-297 (346)
200 3mi9_A Cell division protein k 100.0 2.3E-37 7.8E-42 354.7 18.9 270 802-1080 17-316 (351)
201 1cm8_A Phosphorylated MAP kina 100.0 2.6E-37 8.8E-42 355.5 19.3 264 801-1080 24-312 (367)
202 2wtk_C Serine/threonine-protei 100.0 1.8E-36 6E-41 340.1 25.7 259 801-1082 4-270 (305)
203 3f66_A Hepatocyte growth facto 100.0 2E-37 6.8E-42 346.6 17.8 261 802-1085 25-294 (298)
204 3llt_A Serine/threonine kinase 100.0 3.3E-37 1.1E-41 354.7 20.1 263 800-1077 33-357 (360)
205 2ozo_A Tyrosine-protein kinase 100.0 2.5E-37 8.4E-42 378.4 20.0 255 809-1087 343-603 (613)
206 2h8h_A Proto-oncogene tyrosine 100.0 5.6E-38 1.9E-42 378.7 14.1 258 802-1084 267-525 (535)
207 1fvr_A Tyrosine-protein kinase 100.0 4.4E-37 1.5E-41 348.6 20.6 263 802-1087 25-305 (327)
208 2vgo_A Serine/threonine-protei 100.0 7.2E-37 2.5E-41 339.5 21.7 253 802-1081 14-268 (284)
209 3is5_A Calcium-dependent prote 100.0 4.8E-37 1.6E-41 341.0 20.1 255 802-1078 22-281 (285)
210 2jii_A Serine/threonine-protei 100.0 1.1E-37 3.9E-42 357.2 15.6 267 802-1087 42-341 (352)
211 3q5i_A Protein kinase; CDPK, m 100.0 5.3E-37 1.8E-41 368.7 21.8 258 801-1081 35-307 (504)
212 1xbb_A Tyrosine-protein kinase 100.0 1.8E-37 6.2E-42 345.6 16.3 259 802-1084 16-281 (291)
213 3rp9_A Mitogen-activated prote 100.0 3E-37 1E-41 366.8 18.8 273 802-1081 53-402 (458)
214 2ac3_A MAP kinase-interacting 100.0 7.7E-37 2.6E-41 345.0 21.2 260 802-1079 12-299 (316)
215 2r3i_A Cell division protein k 100.0 4.4E-37 1.5E-41 344.0 19.0 269 802-1079 3-287 (299)
216 2y7j_A Phosphorylase B kinase 100.0 1.9E-36 6.5E-41 348.2 23.6 259 798-1078 90-362 (365)
217 2jam_A Calcium/calmodulin-depe 100.0 9.2E-37 3.2E-41 342.2 20.5 255 801-1080 8-266 (304)
218 2id5_A Lingo-1, leucine rich r 100.0 1.9E-36 6.6E-41 362.3 24.6 322 268-616 15-336 (477)
219 3nyv_A Calmodulin-domain prote 100.0 8.6E-37 3E-41 365.5 21.4 258 802-1082 26-288 (484)
220 3eqc_A Dual specificity mitoge 100.0 3.9E-37 1.3E-41 354.0 17.6 272 802-1084 33-333 (360)
221 3fme_A Dual specificity mitoge 100.0 3.7E-37 1.3E-41 342.9 16.8 261 801-1082 6-273 (290)
222 2clq_A Mitogen-activated prote 100.0 1.8E-36 6E-41 338.4 22.1 256 803-1079 23-282 (295)
223 2ycf_A Serine/threonine-protei 100.0 6E-37 2E-41 346.7 18.4 254 801-1076 9-275 (322)
224 3a7i_A MST3 kinase, serine/thr 100.0 1.3E-36 4.3E-41 340.9 20.9 254 802-1081 22-276 (303)
225 2h6d_A 5'-AMP-activated protei 100.0 1E-36 3.4E-41 336.8 19.5 253 802-1080 11-266 (276)
226 2w5a_A Serine/threonine-protei 100.0 1.2E-37 4.1E-42 344.8 12.0 258 802-1080 6-272 (279)
227 2a19_B Interferon-induced, dou 100.0 5E-37 1.7E-41 340.7 16.9 251 801-1085 10-277 (284)
228 4fl3_A Tyrosine-protein kinase 100.0 7.6E-37 2.6E-41 374.8 20.0 252 808-1083 375-632 (635)
229 3n9x_A Phosphotransferase; mal 100.0 1E-36 3.4E-41 358.7 19.8 273 802-1081 26-367 (432)
230 2yfx_A Tyrosine-protein kinase 100.0 5.5E-37 1.9E-41 347.8 16.9 262 802-1084 30-306 (327)
231 2buj_A Serine/threonine-protei 100.0 6.3E-37 2.2E-41 345.8 17.0 261 802-1083 29-307 (317)
232 3nsz_A CK II alpha, casein kin 100.0 7.6E-37 2.6E-41 347.2 17.6 262 802-1079 36-323 (330)
233 3kvw_A DYRK2, dual specificity 100.0 1.2E-36 4.1E-41 357.2 19.7 264 802-1080 97-413 (429)
234 1x8b_A WEE1HU, WEE1-like prote 100.0 7.2E-37 2.5E-41 340.2 16.2 250 801-1078 10-282 (289)
235 2fst_X Mitogen-activated prote 100.0 4E-37 1.4E-41 353.5 14.3 263 802-1080 29-316 (367)
236 3ll6_A Cyclin G-associated kin 100.0 8.8E-37 3E-41 347.7 16.8 265 802-1092 28-318 (337)
237 3e3p_A Protein kinase, putativ 100.0 2.9E-36 1E-40 346.9 21.3 279 795-1083 16-322 (360)
238 2wei_A Calmodulin-domain prote 100.0 1.2E-36 4.2E-41 338.1 17.6 259 799-1080 19-281 (287)
239 3e7e_A HBUB1, BUB1A, mitotic c 100.0 1.9E-36 6.4E-41 348.9 19.7 254 801-1084 64-341 (365)
240 3com_A Serine/threonine-protei 100.0 2.1E-36 7.1E-41 341.1 19.6 255 801-1080 28-283 (314)
241 2j7t_A Serine/threonine-protei 100.0 5E-37 1.7E-41 344.0 14.4 253 802-1077 19-277 (302)
242 3pg1_A Mitogen-activated prote 100.0 4.3E-37 1.5E-41 354.1 14.0 277 794-1080 14-321 (362)
243 1byg_A CSK, protein (C-termina 100.0 5.4E-37 1.9E-41 339.3 14.2 253 802-1084 21-275 (278)
244 3an0_A Dual specificity mitoge 100.0 1.1E-36 3.7E-41 347.4 17.1 261 801-1083 50-318 (340)
245 1blx_A Cyclin-dependent kinase 100.0 1.2E-36 4.1E-41 345.0 16.8 270 800-1079 9-300 (326)
246 3pfq_A PKC-B, PKC-beta, protei 100.0 2E-36 6.7E-41 373.7 20.0 254 800-1078 339-600 (674)
247 3byv_A Rhoptry kinase; malaria 100.0 2.3E-37 7.7E-42 358.0 10.7 247 801-1078 72-362 (377)
248 1phk_A Phosphorylase kinase; g 100.0 2.7E-36 9.3E-41 337.4 18.9 257 801-1079 16-287 (298)
249 2w1i_A JAK2; chromosomal rearr 100.0 1.7E-36 5.8E-41 343.6 17.1 263 802-1083 41-323 (326)
250 4e7w_A Glycogen synthase kinas 100.0 7.6E-37 2.6E-41 355.1 14.5 265 802-1080 40-326 (394)
251 3eb0_A Putative uncharacterize 100.0 1.4E-36 4.8E-41 352.2 16.7 266 799-1079 4-325 (383)
252 2pml_X PFPK7, Ser/Thr protein 100.0 7.4E-37 2.5E-41 350.1 14.1 266 802-1078 31-325 (348)
253 4exu_A Mitogen-activated prote 100.0 4.5E-36 1.5E-40 346.2 20.5 262 802-1080 42-328 (371)
254 2x7f_A TRAF2 and NCK-interacti 100.0 4.7E-37 1.6E-41 348.3 12.0 257 799-1079 21-290 (326)
255 2y4i_B KSR2, HKSR2, kinase sup 100.0 1.7E-36 5.8E-41 342.6 16.4 260 801-1084 32-304 (319)
256 1u46_A ACK-1, activated CDC42 100.0 3.6E-37 1.2E-41 343.2 10.6 260 802-1083 18-285 (291)
257 1wak_A Serine/threonine-protei 100.0 2.8E-36 9.6E-41 352.0 18.3 265 802-1078 37-394 (397)
258 2vx3_A Dual specificity tyrosi 100.0 1E-35 3.5E-40 344.8 22.3 266 801-1079 53-376 (382)
259 2vwi_A Serine/threonine-protei 100.0 1.1E-36 3.7E-41 341.5 13.4 266 801-1078 14-290 (303)
260 3cek_A Dual specificity protei 100.0 1.4E-36 4.8E-41 342.3 13.4 260 799-1081 25-298 (313)
261 1j1b_A Glycogen synthase kinas 100.0 6.3E-36 2.2E-40 350.2 19.3 264 802-1080 54-341 (420)
262 3qyz_A Mitogen-activated prote 100.0 3.2E-36 1.1E-40 346.8 16.4 269 801-1081 26-319 (364)
263 1z57_A Dual specificity protei 100.0 1.1E-35 3.8E-40 338.9 20.5 262 802-1078 14-331 (339)
264 3aln_A Dual specificity mitoge 100.0 1.3E-36 4.5E-41 344.8 12.6 261 802-1081 22-291 (327)
265 3rgf_A Cyclin-dependent kinase 100.0 2.5E-36 8.6E-41 352.8 15.3 272 803-1082 21-340 (405)
266 2j0j_A Focal adhesion kinase 1 100.0 6E-36 2E-40 368.3 19.1 259 801-1083 389-652 (656)
267 3q60_A ROP5B; pseudokinase, tr 100.0 1.6E-36 5.6E-41 350.1 12.9 258 802-1079 62-356 (371)
268 1q8y_A SR protein kinase; tran 100.0 7.8E-36 2.7E-40 345.2 18.4 268 802-1081 19-339 (373)
269 1zy4_A Serine/threonine-protei 100.0 3.6E-36 1.2E-40 337.2 15.0 254 801-1078 5-286 (303)
270 2dyl_A Dual specificity mitoge 100.0 2.2E-36 7.5E-41 341.5 13.4 257 802-1080 25-288 (318)
271 3coi_A Mitogen-activated prote 100.0 8.3E-36 2.8E-40 341.9 18.0 262 802-1080 24-310 (353)
272 3fhr_A MAP kinase-activated pr 100.0 1.1E-35 3.8E-40 338.0 18.7 259 801-1083 27-295 (336)
273 2i6l_A Mitogen-activated prote 100.0 1.4E-35 4.9E-40 335.1 19.3 266 802-1081 11-311 (320)
274 3o6n_A APL1; leucine-rich repe 100.0 2.5E-35 8.5E-40 342.9 21.7 350 51-422 3-353 (390)
275 2b9h_A MAP kinase FUS3, mitoge 100.0 1.4E-35 4.9E-40 340.1 18.8 269 801-1080 10-310 (353)
276 3oja_B Anopheles plasmodium-re 100.0 2.9E-35 1E-39 361.3 22.3 334 359-712 50-383 (597)
277 3o6n_A APL1; leucine-rich repe 100.0 6.3E-35 2.1E-39 339.5 22.8 333 359-711 44-376 (390)
278 4fcg_A Uncharacterized protein 100.0 8.2E-36 2.8E-40 337.2 14.2 279 27-325 22-314 (328)
279 2eu9_A Dual specificity protei 100.0 5E-35 1.7E-39 335.9 20.9 264 802-1080 19-338 (355)
280 3a99_A Proto-oncogene serine/t 100.0 1.3E-35 4.3E-40 335.3 14.4 245 801-1078 42-296 (320)
281 3oja_B Anopheles plasmodium-re 100.0 6.9E-35 2.4E-39 357.9 21.8 350 47-421 5-358 (597)
282 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-35 1.3E-39 329.7 16.7 257 457-716 51-312 (313)
283 2iwi_A Serine/threonine-protei 100.0 8.4E-36 2.9E-40 335.8 10.4 248 799-1079 28-287 (312)
284 2rio_A Serine/threonine-protei 100.0 6.6E-35 2.3E-39 343.2 17.7 254 802-1077 15-297 (434)
285 3qa8_A MGC80376 protein; kinas 100.0 3.5E-35 1.2E-39 353.6 15.0 273 801-1082 13-309 (676)
286 3p23_A Serine/threonine-protei 100.0 8.2E-35 2.8E-39 341.1 16.6 250 802-1077 24-285 (432)
287 3uqc_A Probable conserved tran 100.0 4.7E-35 1.6E-39 324.3 13.7 237 802-1086 31-269 (286)
288 4fmz_A Internalin; leucine ric 100.0 3.4E-33 1.2E-37 319.5 24.5 307 260-613 40-346 (347)
289 4fmz_A Internalin; leucine ric 100.0 3.7E-33 1.3E-37 319.3 24.6 307 236-589 40-346 (347)
290 3dzo_A Rhoptry kinase domain; 100.0 5E-34 1.7E-38 333.4 16.2 244 802-1076 78-364 (413)
291 3m2w_A MAP kinase-activated pr 100.0 1.6E-33 5.5E-38 314.9 17.5 238 802-1083 17-264 (299)
292 2pzi_A Probable serine/threoni 100.0 2.4E-33 8.1E-38 349.0 16.6 240 802-1081 80-327 (681)
293 2ft3_A Biglycan; proteoglycan, 100.0 6.9E-32 2.4E-36 306.4 24.7 288 313-611 34-331 (332)
294 1xku_A Decorin; proteoglycan, 100.0 1.5E-31 5E-36 303.5 25.4 289 313-611 32-330 (330)
295 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-31 7.4E-36 302.3 25.6 287 290-587 35-331 (332)
296 1xku_A Decorin; proteoglycan, 100.0 4.1E-31 1.4E-35 299.8 25.1 289 265-587 32-330 (330)
297 2vuw_A Serine/threonine-protei 100.0 1.8E-33 6.1E-38 320.2 5.4 246 802-1077 20-333 (336)
298 1z7x_W Ribonuclease inhibitor; 100.0 3.4E-35 1.2E-39 350.1 -11.5 385 96-518 3-441 (461)
299 1z7x_W Ribonuclease inhibitor; 100.0 5.1E-35 1.7E-39 348.6 -11.2 383 216-617 3-444 (461)
300 3ogk_B Coronatine-insensitive 100.0 4.4E-33 1.5E-37 343.0 -4.0 449 61-538 41-548 (592)
301 2z80_A TOLL-like receptor 2, v 100.0 4.9E-30 1.7E-34 293.8 12.9 278 389-691 36-319 (353)
302 3ogk_B Coronatine-insensitive 100.0 1.7E-31 5.9E-36 328.7 -0.7 424 234-683 67-548 (592)
303 2z80_A TOLL-like receptor 2, v 100.0 2.3E-29 7.7E-34 288.3 15.9 257 361-617 53-318 (353)
304 2z66_A Variable lymphocyte rec 100.0 7.1E-29 2.4E-33 278.2 18.6 249 364-616 11-264 (306)
305 2z66_A Variable lymphocyte rec 100.0 1E-28 3.4E-33 277.0 18.7 230 336-566 28-262 (306)
306 4fcg_A Uncharacterized protein 100.0 1.4E-28 4.8E-33 277.8 17.9 288 41-349 22-314 (328)
307 1ozn_A Reticulon 4 receptor; N 100.0 2.3E-28 8E-33 270.9 19.3 236 409-646 33-269 (285)
308 1ozn_A Reticulon 4 receptor; N 100.0 3.8E-28 1.3E-32 269.3 16.8 233 457-691 33-266 (285)
309 1wwl_A Monocyte differentiatio 100.0 2E-29 7E-34 283.1 6.6 247 431-688 42-311 (312)
310 3zyi_A Leucine-rich repeat-con 100.0 6.6E-28 2.2E-32 285.8 19.7 252 409-690 55-307 (452)
311 3zyj_A Leucine-rich repeat-con 100.0 7.7E-28 2.6E-32 284.1 19.5 252 409-690 44-296 (440)
312 3zyj_A Leucine-rich repeat-con 100.0 1.7E-27 6E-32 281.1 21.4 249 361-614 44-293 (440)
313 3g06_A SSPH2 (leucine-rich rep 100.0 2.9E-28 9.8E-33 295.9 14.9 292 48-408 9-308 (622)
314 3zyi_A Leucine-rich repeat-con 100.0 1.2E-27 4.1E-32 283.6 19.8 249 362-615 56-305 (452)
315 1wwl_A Monocyte differentiatio 99.9 2.9E-28 1E-32 273.7 12.9 252 188-470 39-310 (312)
316 3o53_A Protein LRIM1, AGAP0063 99.9 9.3E-29 3.2E-33 278.4 8.0 265 316-594 14-281 (317)
317 3o53_A Protein LRIM1, AGAP0063 99.9 5.1E-29 1.7E-33 280.5 4.8 269 339-646 13-284 (317)
318 3g06_A SSPH2 (leucine-rich rep 99.9 1.8E-26 6.2E-31 280.1 22.3 262 361-691 41-302 (622)
319 3oja_A Leucine-rich immune mol 99.9 7.4E-28 2.5E-32 286.8 8.4 234 433-681 35-270 (487)
320 2p1m_B Transport inhibitor res 99.9 3.6E-30 1.2E-34 317.1 -14.6 456 60-541 33-544 (594)
321 3oja_A Leucine-rich immune mol 99.9 3.1E-27 1.1E-31 281.5 9.9 234 361-633 35-270 (487)
322 4azs_A Methyltransferase WBDD; 99.9 1.7E-27 5.7E-32 287.5 7.6 186 810-1006 242-437 (569)
323 2o6q_A Variable lymphocyte rec 99.9 1.2E-25 4.3E-30 246.7 17.1 214 60-276 3-217 (270)
324 2p1m_B Transport inhibitor res 99.9 1E-28 3.5E-33 304.2 -8.9 426 115-565 61-544 (594)
325 2z62_A TOLL-like receptor 4, v 99.9 1.9E-25 6.4E-30 246.3 16.9 232 437-693 12-244 (276)
326 2z62_A TOLL-like receptor 4, v 99.9 5.1E-25 1.8E-29 242.8 16.1 207 409-616 29-240 (276)
327 3rfs_A Internalin B, repeat mo 99.9 8.1E-25 2.8E-29 240.4 13.7 16 381-396 38-53 (272)
328 2o6q_A Variable lymphocyte rec 99.9 9.6E-24 3.3E-28 231.6 20.3 205 409-616 17-221 (270)
329 3rfs_A Internalin B, repeat mo 99.9 2.3E-24 7.8E-29 236.8 15.2 211 405-626 38-248 (272)
330 1p9a_G Platelet glycoprotein I 99.9 5.4E-24 1.9E-28 235.6 15.6 205 477-689 7-211 (290)
331 2ast_B S-phase kinase-associat 99.9 4.4E-26 1.5E-30 259.2 -2.1 265 60-332 35-313 (336)
332 3goz_A Leucine-rich repeat-con 99.9 1.8E-25 6E-30 256.6 1.8 261 341-621 3-305 (362)
333 1p9a_G Platelet glycoprotein I 99.9 2.9E-23 1E-27 229.8 17.9 203 381-614 7-209 (290)
334 3en9_A Glycoprotease, O-sialog 99.9 1.6E-24 5.6E-29 260.0 8.5 187 805-1008 339-539 (540)
335 3goz_A Leucine-rich repeat-con 99.9 2.9E-25 9.8E-30 254.9 -0.5 260 101-380 3-304 (362)
336 4glp_A Monocyte differentiatio 99.9 1.4E-23 4.9E-28 235.3 12.5 200 144-349 91-307 (310)
337 3m19_A Variable lymphocyte rec 99.9 5.2E-23 1.8E-27 223.1 14.8 190 60-253 3-192 (251)
338 2xwt_C Thyrotropin receptor; s 99.9 4.9E-23 1.7E-27 221.6 12.4 196 481-683 32-236 (239)
339 2ca6_A RAN GTPase-activating p 99.9 5.7E-25 2E-29 255.0 -4.0 246 111-376 23-319 (386)
340 3m19_A Variable lymphocyte rec 99.9 2.7E-22 9.1E-27 217.5 17.1 181 433-616 15-195 (251)
341 2ca6_A RAN GTPase-activating p 99.9 9.4E-25 3.2E-29 253.2 -3.2 249 424-690 24-320 (386)
342 4glp_A Monocyte differentiatio 99.9 7.9E-23 2.7E-27 229.2 12.3 226 361-613 65-307 (310)
343 1h6u_A Internalin H; cell adhe 99.9 1.8E-22 6.3E-27 225.7 14.7 208 364-613 23-230 (308)
344 2xwt_C Thyrotropin receptor; s 99.9 1.8E-22 6E-27 217.3 13.2 196 409-610 32-236 (239)
345 3cvr_A Invasion plasmid antige 99.9 4.1E-23 1.4E-27 247.4 8.0 209 51-312 33-254 (571)
346 2ast_B S-phase kinase-associat 99.9 1E-23 3.5E-28 239.7 1.8 254 121-405 48-314 (336)
347 1h6u_A Internalin H; cell adhe 99.9 7.4E-22 2.5E-26 220.7 14.8 208 340-565 23-230 (308)
348 2o6s_A Variable lymphocyte rec 99.9 1.3E-21 4.5E-26 205.5 11.8 185 61-265 6-190 (208)
349 4ay9_X Follicle-stimulating ho 99.9 2.4E-21 8.1E-26 221.0 14.6 181 337-518 31-216 (350)
350 4ay9_X Follicle-stimulating ho 99.8 3.1E-21 1E-25 220.1 15.1 54 388-444 13-66 (350)
351 1zar_A RIO2 kinase; serine kin 99.8 8.5E-22 2.9E-26 216.5 8.0 164 797-992 85-274 (282)
352 4b8c_D Glucose-repressible alc 99.8 6.1E-22 2.1E-26 246.5 5.5 230 29-274 129-369 (727)
353 2o6s_A Variable lymphocyte rec 99.8 2.1E-20 7E-25 196.4 15.8 162 457-625 29-190 (208)
354 3cvr_A Invasion plasmid antige 99.8 1.3E-20 4.6E-25 225.7 14.5 168 433-625 81-255 (571)
355 1m9s_A Internalin B; cell inva 99.8 9.5E-20 3.2E-24 220.9 13.4 191 384-614 21-211 (605)
356 1h6t_A Internalin B; cell adhe 99.8 1E-19 3.5E-24 201.5 11.6 188 386-589 26-213 (291)
357 1m9s_A Internalin B; cell inva 99.8 1.2E-19 4.1E-24 220.0 12.1 191 359-565 20-210 (605)
358 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-19 5.9E-24 190.8 10.9 157 507-691 14-171 (220)
359 1h6t_A Internalin B; cell adhe 99.8 1.4E-19 4.8E-24 200.4 10.4 170 430-613 44-213 (291)
360 4b8c_D Glucose-repressible alc 99.8 7.5E-20 2.6E-24 227.7 8.2 228 432-690 173-408 (727)
361 2xot_A Amphoterin-induced prot 99.8 3.2E-19 1.1E-23 204.2 11.7 176 436-614 22-203 (361)
362 3e6j_A Variable lymphocyte rec 99.8 6.9E-19 2.4E-23 187.5 13.4 156 60-229 17-172 (229)
363 1xeu_A Internalin C; cellular 99.8 1.4E-19 5E-24 197.0 7.9 169 432-615 19-187 (263)
364 2v70_A SLIT-2, SLIT homolog 2 99.8 6.5E-19 2.2E-23 186.3 12.6 155 460-617 15-170 (220)
365 2xot_A Amphoterin-induced prot 99.8 4.2E-19 1.4E-23 203.2 11.7 182 483-689 21-205 (361)
366 2v9t_B SLIT homolog 2 protein 99.8 8.6E-19 2.9E-23 185.4 13.2 152 460-614 15-166 (220)
367 1dce_A Protein (RAB geranylger 99.8 7.9E-21 2.7E-25 229.1 -3.0 216 357-606 346-566 (567)
368 2v9t_B SLIT homolog 2 protein 99.8 1.3E-18 4.3E-23 184.1 13.9 151 436-589 15-165 (220)
369 1dce_A Protein (RAB geranylger 99.8 4.1E-20 1.4E-24 222.9 2.1 201 165-399 346-548 (567)
370 3e6j_A Variable lymphocyte rec 99.8 2.7E-18 9.2E-23 182.9 14.9 156 458-617 21-176 (229)
371 1xeu_A Internalin C; cellular 99.7 2.5E-18 8.5E-23 187.2 8.7 80 480-565 106-185 (263)
372 1w8a_A SLIT protein; signaling 99.7 3.7E-17 1.3E-21 168.9 13.9 132 483-617 11-143 (192)
373 4ezg_A Putative uncharacterize 99.7 1.1E-17 3.6E-22 173.9 9.6 153 117-301 41-194 (197)
374 4ezg_A Putative uncharacterize 99.7 9.7E-18 3.3E-22 174.2 9.2 153 93-253 41-194 (197)
375 3sb4_A Hypothetical leucine ri 99.7 1.1E-17 3.8E-22 188.9 9.6 102 479-582 225-327 (329)
376 3sb4_A Hypothetical leucine ri 99.7 7.3E-18 2.5E-22 190.4 7.9 267 239-535 48-328 (329)
377 1zth_A RIO1 serine protein kin 99.7 3.7E-17 1.3E-21 177.4 10.1 140 804-957 49-220 (258)
378 1w8a_A SLIT protein; signaling 99.7 5E-17 1.7E-21 167.9 10.5 113 553-666 30-143 (192)
379 2ell_A Acidic leucine-rich nuc 99.6 7.9E-16 2.7E-20 155.3 11.2 132 456-589 24-160 (168)
380 2ell_A Acidic leucine-rich nuc 99.6 8E-16 2.7E-20 155.2 10.4 132 120-253 24-160 (168)
381 4fdw_A Leucine rich hypothetic 99.6 6.4E-15 2.2E-19 169.8 17.8 242 361-613 136-383 (401)
382 2wfh_A SLIT homolog 2 protein 99.6 2.8E-15 9.6E-20 154.6 12.5 128 483-614 13-140 (193)
383 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.9E-20 150.7 8.2 127 456-584 17-148 (149)
384 4fdw_A Leucine rich hypothetic 99.6 1.3E-14 4.4E-19 167.2 18.1 161 423-589 217-383 (401)
385 2je0_A Acidic leucine-rich nuc 99.6 6.4E-16 2.2E-20 152.5 6.1 128 479-608 16-148 (149)
386 2o6r_A Variable lymphocyte rec 99.6 4.3E-15 1.5E-19 151.3 12.2 132 483-617 10-141 (177)
387 2wfh_A SLIT homolog 2 protein 99.6 6.9E-15 2.4E-19 151.7 12.2 109 480-589 31-139 (193)
388 4gyi_A RIO2 kinase; protein ki 99.6 1.2E-15 4.2E-20 171.0 6.8 139 803-957 96-266 (397)
389 2o6r_A Variable lymphocyte rec 99.6 9E-15 3.1E-19 148.9 12.2 112 480-591 28-139 (177)
390 1ds9_A Outer arm dynein; leuci 99.5 1.4E-16 4.7E-21 165.6 -5.0 133 94-231 16-155 (198)
391 4fs7_A Uncharacterized protein 99.5 1.7E-13 5.6E-18 158.7 20.4 237 354-604 156-392 (394)
392 4fs7_A Uncharacterized protein 99.5 3.2E-13 1.1E-17 156.3 21.5 315 279-610 62-376 (394)
393 1ds9_A Outer arm dynein; leuci 99.5 2.4E-16 8.2E-21 163.8 -4.7 161 428-613 14-185 (198)
394 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-14 4E-19 147.8 7.2 104 481-588 43-152 (176)
395 1a9n_A U2A', U2A'; complex (nu 99.5 8E-15 2.7E-19 149.0 5.7 133 475-613 14-153 (176)
396 3g39_A Variable lymphocyte rec 99.4 4.3E-13 1.5E-17 135.1 10.5 107 506-615 11-117 (170)
397 3g39_A Variable lymphocyte rec 99.4 8E-13 2.7E-17 133.2 10.8 86 504-589 30-115 (170)
398 2r9u_A Variable lymphocyte rec 99.4 8E-13 2.7E-17 133.6 10.5 105 507-614 15-119 (174)
399 2r9u_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 132.2 10.1 104 459-565 15-118 (174)
400 4gt6_A Cell surface protein; l 99.3 6.6E-11 2.3E-15 136.8 21.1 133 471-610 256-388 (394)
401 4gt6_A Cell surface protein; l 99.3 7.4E-11 2.5E-15 136.4 19.2 333 231-589 54-391 (394)
402 3un9_A NLR family member X1; l 99.2 4.9E-14 1.7E-18 160.8 -9.0 172 96-287 72-262 (372)
403 3un9_A NLR family member X1; l 99.2 8.8E-14 3E-18 158.7 -7.2 186 120-325 72-283 (372)
404 2ifg_A High affinity nerve gro 99.2 3.5E-11 1.2E-15 136.7 9.8 103 509-614 13-117 (347)
405 2ifg_A High affinity nerve gro 99.2 3.8E-11 1.3E-15 136.3 9.6 102 461-565 13-116 (347)
406 3tm0_A Aminoglycoside 3'-phosp 99.1 1.6E-10 5.6E-15 125.4 10.6 147 798-955 10-213 (263)
407 4h09_A Hypothetical leucine ri 99.0 1.1E-08 3.8E-13 117.4 22.5 144 450-598 211-354 (379)
408 4h09_A Hypothetical leucine ri 99.0 1.5E-08 5E-13 116.4 22.6 318 235-578 41-358 (379)
409 1nd4_A Aminoglycoside 3'-phosp 98.9 7.5E-10 2.6E-14 120.0 7.9 129 811-955 29-214 (264)
410 2ra8_A Uncharacterized protein 98.9 2.8E-10 9.7E-15 128.4 3.4 83 239-323 251-341 (362)
411 2ra8_A Uncharacterized protein 98.9 1.2E-10 3.9E-15 131.6 -0.8 204 72-299 107-341 (362)
412 3dxp_A Putative acyl-COA dehyd 98.8 9.1E-09 3.1E-13 117.2 10.7 143 806-955 42-248 (359)
413 3rw6_A Nuclear RNA export fact 98.8 8.3E-11 2.8E-15 125.7 -6.2 160 61-246 77-257 (267)
414 3sg8_A APH(2'')-ID; antibiotic 98.7 5.5E-09 1.9E-13 115.9 4.1 187 807-1008 25-288 (304)
415 1io0_A Tropomodulin; LRR prote 98.5 9.4E-09 3.2E-13 104.7 -2.0 120 86-205 26-164 (185)
416 3r70_A Aminoglycoside phosphot 98.4 8.4E-07 2.9E-11 98.9 11.4 137 803-956 38-238 (320)
417 3rw6_A Nuclear RNA export fact 98.4 4E-08 1.4E-12 104.9 0.5 67 501-569 167-237 (267)
418 1io0_A Tropomodulin; LRR prote 98.3 3.6E-08 1.2E-12 100.4 -2.6 122 112-253 28-164 (185)
419 4gkh_A Aminoglycoside 3'-phosp 98.2 7.5E-06 2.6E-10 88.8 12.7 135 809-955 31-223 (272)
420 3d1u_A Putative fructosamine-3 98.2 8.1E-06 2.8E-10 89.0 12.8 76 806-887 19-97 (288)
421 3tdw_A Gentamicin resistance p 98.1 1.4E-05 4.8E-10 88.3 11.8 136 807-955 24-224 (306)
422 3ovc_A Hygromycin-B 4-O-kinase 98.0 1.7E-05 5.8E-10 89.7 11.1 143 806-956 45-244 (362)
423 3ats_A Putative uncharacterize 97.8 2.7E-05 9.1E-10 88.2 8.0 82 808-889 26-122 (357)
424 3e4g_A ATP synthase subunit S, 97.6 1.3E-05 4.4E-10 79.2 1.8 81 97-177 62-148 (176)
425 3e4g_A ATP synthase subunit S, 97.6 2.7E-05 9.3E-10 76.9 3.5 86 120-205 61-153 (176)
426 2q83_A YTAA protein; 2635576, 97.5 0.00018 6.1E-09 80.8 8.9 140 808-954 38-251 (346)
427 1pgv_A TMD-1, tropomodulin TMD 97.5 8.9E-06 3E-10 82.0 -1.7 90 89-178 34-136 (197)
428 2olc_A MTR kinase, methylthior 97.4 0.00041 1.4E-08 79.6 11.4 77 807-885 35-120 (397)
429 3jr1_A Putative fructosamine-3 97.4 0.00087 3E-08 73.5 12.3 138 807-951 41-232 (312)
430 3f7w_A Putative fructosamine-3 97.2 0.0016 5.4E-08 71.0 11.5 79 803-887 16-97 (288)
431 2pyw_A Uncharacterized protein 97.1 0.00063 2.2E-08 78.6 7.7 78 924-1004 231-313 (420)
432 1zyl_A Hypothetical protein YI 97.0 0.0051 1.7E-07 68.3 13.6 160 790-955 9-223 (328)
433 3dxq_A Choline/ethanolamine ki 96.9 0.0018 6.2E-08 71.0 9.3 73 805-887 21-95 (301)
434 1pgv_A TMD-1, tropomodulin TMD 96.9 8.8E-05 3E-09 74.7 -1.7 68 115-182 36-112 (197)
435 3csv_A Aminoglycoside phosphot 96.7 0.0035 1.2E-07 69.8 9.8 141 809-956 25-218 (333)
436 2ppq_A HSK, HK, homoserine kin 96.6 0.0051 1.7E-07 68.0 9.7 157 793-954 8-216 (322)
437 3feg_A Choline/ethanolamine ki 96.4 0.004 1.4E-07 70.2 7.6 141 808-955 56-254 (379)
438 1nw1_A Choline kinase (49.2 KD 96.4 0.0045 1.5E-07 71.4 7.7 72 808-887 79-159 (429)
439 3rfe_A Platelet glycoprotein I 96.3 0.0035 1.2E-07 58.8 4.8 58 630-689 13-71 (130)
440 2qg7_A Ethanolamine kinase PV0 96.2 0.012 4.2E-07 68.0 10.2 73 808-887 114-188 (458)
441 3rfe_A Platelet glycoprotein I 96.2 0.006 2E-07 57.3 5.9 36 578-613 33-68 (130)
442 3c5i_A Choline kinase; choline 96.2 0.0054 1.8E-07 69.4 6.7 73 808-887 39-121 (369)
443 3i1a_A Spectinomycin phosphotr 95.7 0.017 5.8E-07 64.3 8.1 32 924-955 205-236 (339)
444 3f2s_A CK, chetk-alpha, cholin 94.7 0.057 2E-06 61.0 8.3 144 808-955 58-280 (401)
445 2yle_A Protein spire homolog 1 94.6 0.21 7E-06 50.5 11.0 121 885-1024 33-154 (229)
446 3mes_A Choline kinase; malaria 94.2 0.064 2.2E-06 61.2 7.4 73 808-887 76-157 (424)
447 3g15_A CK, chetk-alpha, cholin 87.3 1.1 3.9E-05 50.6 8.4 30 926-955 245-280 (401)
448 4ann_A ESSB; membrane protein, 83.9 2.5 8.4E-05 42.6 7.8 124 850-1009 36-159 (215)
449 4ano_A ESSB; membrane protein, 83.4 3.6 0.00012 41.6 8.9 115 858-1008 48-163 (219)
450 3cxl_A N-chimerin; SH2, RHO-GA 80.7 0.18 6E-06 58.4 -2.2 63 806-871 146-215 (463)
451 2ks1_B Epidermal growth factor 66.5 3.7 0.00013 29.6 2.5 17 746-762 17-33 (44)
452 2l2t_A Receptor tyrosine-prote 60.0 4.1 0.00014 29.3 1.8 17 743-759 12-29 (44)
453 2knc_A Integrin alpha-IIB; tra 53.6 7.4 0.00025 29.4 2.3 21 742-762 15-35 (54)
454 2l8s_A Integrin alpha-1; trans 43.9 9.3 0.00032 28.7 1.5 21 742-762 12-32 (54)
455 2k9y_A Ephrin type-A receptor 43.5 9.1 0.00031 27.1 1.4 13 742-754 15-27 (41)
456 2jwa_A Receptor tyrosine-prote 38.8 12 0.0004 26.9 1.3 10 742-751 13-22 (44)
457 2lz0_A Uncharacterized protein 36.6 59 0.002 28.1 5.9 45 444-489 8-52 (100)
458 2lz0_A Uncharacterized protein 29.5 97 0.0033 26.7 6.1 12 475-486 15-26 (100)
459 1zza_A Stannin, AG8_1; helix, 29.1 29 0.001 27.3 2.2 23 740-762 14-36 (90)
460 2l6w_A Beta-type platelet-deri 34.3 12 0.00042 25.8 0.0 6 763-768 31-36 (39)
461 3ls8_A Phosphatidylinositol 3- 28.1 2.3E+02 0.0078 33.2 10.6 46 902-954 454-501 (614)
462 2klu_A T-cell surface glycopro 25.6 38 0.0013 26.4 2.3 7 763-769 34-40 (70)
463 2k1k_A Ephrin type-A receptor 21.5 39 0.0013 23.5 1.5 9 743-751 13-21 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-97 Score=939.99 Aligned_cols=686 Identities=33% Similarity=0.480 Sum_probs=645.6
Q ss_pred cccCCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccceeeecCCeEEEEeccCcccccc---ccccccCccccce
Q 001274 24 NVSVTSLTEEGVSLLEFKASLIDPSNNLESWNSSDMTPCNWIGVECTDFKVTSVDLHGLNLSGI---LSPRICDLPRLVE 100 (1109)
Q Consensus 24 ~~~~~~~~~~~~all~~k~~~~~~~~~~~~W~~~~~~~c~w~gv~C~~~~v~~l~l~~~~l~g~---~~~~~~~l~~L~~ 100 (1109)
++...+.++|++|||+||+++.||. .+++|+.+ .|||.|.||+|+.++|+++||++.++.|. +++++++|++|+.
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~-~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSSN-KNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCTT-SCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred CccccCCHHHHHHHHHHHhhCCCcc-cccCCCCC-CCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 4445557889999999999999998 89999854 58999999999988999999999999999 9999999999999
Q ss_pred eecccCccCCCCCccccCCCCCceEEccCCcccccCCc--hhhccccceEEEcccccccccccccc-cCcCCCceEEeec
Q 001274 101 FNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPF--QLFFINTLRKLYLCENYIFGEIPEEI-GNLTSLEELVIYS 177 (1109)
Q Consensus 101 L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~ 177 (1109)
++++.|++.. +|..++++++|++|||++|.+.|.+|. .++.+++|++|+|++|.+.+.+|..+ +++++|++|+|++
T Consensus 82 l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 82 LFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred cCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 9999887753 678999999999999999999999998 99999999999999999999999876 8999999999999
Q ss_pred CCCCCCCCcc---cccccccceeccccccccCCCCccccccccchhhhcccccccccCchhhhccccccceecccccccC
Q 001274 178 NNLTGAIPAS---ISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLSG 254 (1109)
Q Consensus 178 n~l~~~~p~~---~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 254 (1109)
|++++..|.. +.++++|++|++++|.+++..|. +.+++|++|+|++|.+++.+|. ++++++|++|+|++|++++
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC
Confidence 9999988877 89999999999999999987764 8899999999999999998887 9999999999999999999
Q ss_pred CCCCCccccccccceeeeeccceecCchhhhccCccceEEeecccccCccCcccCCC-CcCcEEEccCCcccCCCccccc
Q 001274 255 EIPPTIGNIQSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNC-TSAVEIDLSENQLTGFIPRELG 333 (1109)
Q Consensus 255 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~ 333 (1109)
.+|..++++++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|+|++|++++.+|..++
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 99999999999999999999999988875 89999999999999999999998875 9999999999999999999999
Q ss_pred CCCCcceEecccccccCccccc-ccCCCCccEEEcccCcccCCCCcchhccc-ccceEEcccccccccCCCcccc--cCc
Q 001274 334 LIPNLCLLQLFENMLQGSIPRE-LGQLTQLHKLDLSINNLTGTIPLEFQNLT-YLVDLQLFDNHLEGTIPPHIGV--NSH 409 (1109)
Q Consensus 334 ~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~--~~~ 409 (1109)
.+++|+.|++++|.+.+.+|.. +..+++|++|++++|++++.+|..+.+++ +|+.|++++|++++.+|..+.. +++
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 9999999999999999888876 99999999999999999999999999998 9999999999999999998877 889
Q ss_pred CcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceecccc
Q 001274 410 LSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQ 489 (1109)
Q Consensus 410 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 489 (1109)
|++|++++|++++.+|..++.+++|++|+|++|++++.+|..+..+++|++|++++|++++.+|..|..+++|++|+|++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCC
Q 001274 490 NRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAP 569 (1109)
Q Consensus 490 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 569 (1109)
|++++.+|..+.++++|++|+|++|++++.+|.+++++++|++|+|++|++++.+|..++++++|++|||++|+++|.+|
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc----------------------------------------------ceecccccccccccCcccCCCcccc
Q 001274 570 EELGQLVNL----------------------------------------------ELLKLSDNKLTGAIPSSLGGLARLT 603 (1109)
Q Consensus 570 ~~l~~l~~L----------------------------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~ 603 (1109)
..+.....+ +.++++.|.+.|.+|..|+.+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 887664433 3445566889999999999999999
Q ss_pred eeeccCccccccccccccccchhhhhhccCCccccccccccccCccccceeecCCCccccCCchhhhccccceEEEccCc
Q 001274 604 ELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIPASMGEQMSLLVCNLSNN 683 (1109)
Q Consensus 604 ~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l~ls~N 683 (1109)
.|||++|+++|.+|.++++++.|+ .|+|++|+++|.+|..|+++++|++|||++|+++|.||..++.+++|++||||+|
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~-~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLF-ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCC-EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred EEECcCCcccccCCHHHhccccCC-EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 999999999999999999999997 5999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcccccccCCcccCCCCcccc-CCCccc
Q 001274 684 NLVGTVPNTTVFRRIDSSNFAGNRGLCML-GSDCHQ 718 (1109)
Q Consensus 684 ~l~g~~p~~~~~~~~~~~~~~~n~~~c~~-~~~c~~ 718 (1109)
+|+|.||.+++|.+|+..+|.||+++||. .+.|..
T Consensus 715 ~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~ 750 (768)
T 3rgz_A 715 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750 (768)
T ss_dssp EEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCS
T ss_pred cccccCCCchhhccCCHHHhcCCchhcCCCCcCCCC
Confidence 99999999999999999999999999997 457865
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.9e-77 Score=753.88 Aligned_cols=604 Identities=32% Similarity=0.473 Sum_probs=559.7
Q ss_pred EeccCcccccccc--ccccCccccceeecccCccCCCCCc--cccCCCCCceEEccCCcccccCCchh-hccccceEEEc
Q 001274 77 VDLHGLNLSGILS--PRICDLPRLVEFNISMNFVTGSIPT--DLANCSSLEILDLCTNRLHGVIPFQL-FFINTLRKLYL 151 (1109)
Q Consensus 77 l~l~~~~l~g~~~--~~~~~l~~L~~L~ls~n~~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L 151 (1109)
+++.++...|..+ +.++++++|++|+|++|.++|.+|. .+++|++|++|||++|.+.+.+|..+ ..+++|++|+|
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 3344444444444 7899999999999999999999998 99999999999999999999999876 78999999999
Q ss_pred cccccccccccc---ccCcCCCceEEeecCCCCCCCCcccccccccceeccccccccCCCCccccccccchhhhcccccc
Q 001274 152 CENYIFGEIPEE---IGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSL 228 (1109)
Q Consensus 152 ~~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 228 (1109)
++|.+++..|.. ++++++|++|+|++|++++.+|. +++++|++|++++|.+++.+|. ++++++|++|+|++|.+
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC
Confidence 999999998887 89999999999999999987664 8999999999999999988887 99999999999999999
Q ss_pred cccCchhhhccccccceecccccccCCCCCCccccccccceeeeeccceecCchhhhcc-CccceEEeecccccCccCcc
Q 001274 229 EGFLPSELEKLRNLTDLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGGLPKELGKL-SRLKKLYVYTNELNGTIPHE 307 (1109)
Q Consensus 229 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~~~~ 307 (1109)
++.+|..+.++++|++|+|++|++++.+|.. .+++|++|++++|++++.+|..++.+ ++|++|++++|.+++.+|..
T Consensus 236 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 313 (768)
T 3rgz_A 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313 (768)
T ss_dssp CSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG
T ss_pred CCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH
Confidence 9999999999999999999999999888876 89999999999999999999999876 99999999999999999999
Q ss_pred cCCCCcCcEEEccCCcccCCCccc-ccCCCCcceEecccccccCcccccccCCC-CccEEEcccCcccCCCCcchhc--c
Q 001274 308 LGNCTSAVEIDLSENQLTGFIPRE-LGLIPNLCLLQLFENMLQGSIPRELGQLT-QLHKLDLSINNLTGTIPLEFQN--L 383 (1109)
Q Consensus 308 l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~--l 383 (1109)
++++++|++|+|++|++++.+|.. +..+++|+.|++++|.+.+.+|..+..++ +|++|++++|++++.+|..+.. +
T Consensus 314 ~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 999999999999999999888865 89999999999999999999999999987 9999999999999989888877 8
Q ss_pred cccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeec
Q 001274 384 TYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLML 463 (1109)
Q Consensus 384 ~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 463 (1109)
++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCccccc
Q 001274 464 GQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGT 543 (1109)
Q Consensus 464 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 543 (1109)
++|++++.+|..|.++++|++|+|++|++++.+|.+++.+++|++|+|++|++++.+|..++++++|++|+|++|+++|.
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCCC----------------------------------------------eeecCCCcCccCCCcccccccc
Q 001274 544 IPHELGNCVNLQ----------------------------------------------RLDLSRNQFTGSAPEELGQLVN 577 (1109)
Q Consensus 544 ~p~~~~~l~~L~----------------------------------------------~L~Ls~N~l~~~~p~~l~~l~~ 577 (1109)
+|.++..+..+. .++++.|.++|.+|..+..+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 998876654433 3455668889999999999999
Q ss_pred cceecccccccccccCcccCCCcccceeeccCccccccccccccccchhhhhhccCCccccccccccccCccccceeecC
Q 001274 578 LELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLD 657 (1109)
Q Consensus 578 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 657 (1109)
|+.|+|++|+++|.+|..|+++++|+.|+|++|.++|.+|..+++++.|+ .||||+|+++|.+|..++.+++|++|||+
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN-ILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-EEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCC-EEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 99999999999999999999999999999999999999999999999998 59999999999999999999999999999
Q ss_pred CCccccCCchhhhccccceEEEccCccccc
Q 001274 658 DNQLIGEIPASMGEQMSLLVCNLSNNNLVG 687 (1109)
Q Consensus 658 ~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g 687 (1109)
+|+|+|.||.. +.+..+....+.+|+--|
T Consensus 713 ~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 713 NNNLSGPIPEM-GQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp SSEEEEECCSS-SSGGGSCGGGGCSCTEEE
T ss_pred CCcccccCCCc-hhhccCCHHHhcCCchhc
Confidence 99999999964 334445555677886433
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-64 Score=633.21 Aligned_cols=589 Identities=22% Similarity=0.210 Sum_probs=440.2
Q ss_pred EeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCceEEccCCcccccCCchhhccccceEEEcccccc
Q 001274 77 VDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYI 156 (1109)
Q Consensus 77 l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 156 (1109)
+|+++++++ .+|..+. +++++|+|++|.+++..+..++++++|++|+|++|.+++..|..+..+++|++|+|++|.+
T Consensus 9 ~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 9 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp EECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred eECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 556666665 3555554 7899999999999998888899999999999999999999999999999999999999999
Q ss_pred cccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccccccCCCCccccccccchhhhcccccccccCchhh
Q 001274 157 FGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSEL 236 (1109)
Q Consensus 157 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 236 (1109)
++..+..|+++++|++|+|++|++++..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHh
Confidence 86666689999999999999999998778899999999999999999999999999999999999999999998888876
Q ss_pred h--ccccccceecccccccCCCCCCccccccccceeeeeccceecCchhhh---ccCccceEEeecccccCccCcccCCC
Q 001274 237 E--KLRNLTDLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGGLPKELG---KLSRLKKLYVYTNELNGTIPHELGNC 311 (1109)
Q Consensus 237 ~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~l~~n~l~~~~~~~l~~l 311 (1109)
. .+++|++|+|++|++++..|..+..+.+|+.|++++|.+.+.....+. ..++|+.|++++|.+++..|..+.++
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l 245 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred hccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhcc
Confidence 5 458999999999999988899999999999999999988754443332 34789999999999988888888887
Q ss_pred Cc--CcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCC-----CCc----ch
Q 001274 312 TS--AVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGT-----IPL----EF 380 (1109)
Q Consensus 312 ~~--L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-----~p~----~~ 380 (1109)
+. |++|+|++|++++..|..++.+++|+.|++++|.+.+..|..|..+++|++|++++|...+. +|. .|
T Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence 65 99999999998888888888888888888888888888888888888888888887655432 221 45
Q ss_pred hcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccc--ccc
Q 001274 381 QNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTC--RSL 458 (1109)
Q Consensus 381 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L 458 (1109)
..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.... .....|..+ ++|
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~----------------------l~~~~f~~~~~~~L 383 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT----------------------LTNETFVSLAHSPL 383 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCE----------------------ECTTTTGGGTTSCC
T ss_pred ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhh----------------------cchhhhcccccCcC
Confidence 55555555555555555555555555555555555555432211 111122222 345
Q ss_pred ceeecccccccccCCccccCCcccceeccccccccCCCC-ccccccccccEEEccCCccCCCCChhhcccccccEEeccc
Q 001274 459 MQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIP-PEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISS 537 (1109)
Q Consensus 459 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 537 (1109)
+.|++++|++++..|..|.++++|++|+|++|.+++.+| ..|.++++|++|++++|++++..+..|..+++|+.|++++
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 463 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence 555555555555555555555566666666665554333 4555566666666666666555555566666666666666
Q ss_pred Cccc--ccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccC--------cccCCCcccceeec
Q 001274 538 NSLS--GTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIP--------SSLGGLARLTELQM 607 (1109)
Q Consensus 538 N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~l 607 (1109)
|.++ +.+|..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..+ ..|.++++|+.|++
T Consensus 464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp SCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred ccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence 6554 3455566666666666666666665555556666666666666666654322 23667777777777
Q ss_pred cCccccccccccccccchhhhhhccCCccccccccccccCccccceeecCCCccccCCchhhh-ccccceEEEccCcccc
Q 001274 608 GGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIPASMG-EQMSLLVCNLSNNNLV 686 (1109)
Q Consensus 608 ~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~-~l~~L~~l~ls~N~l~ 686 (1109)
++|.++...+..|.+++.|+ .|+|++|+|++..+..|..+++|+.|+|++|+|++.+|..+. .+++|+.+++++|++.
T Consensus 544 ~~N~l~~i~~~~~~~l~~L~-~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 544 ESNGFDEIPVEVFKDLFELK-IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCCCCCHHHcccccCcc-eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 77777743334567777776 478888888877777889999999999999999988888887 7899999999999999
Q ss_pred cccCC
Q 001274 687 GTVPN 691 (1109)
Q Consensus 687 g~~p~ 691 (1109)
|.++.
T Consensus 623 c~c~~ 627 (680)
T 1ziw_A 623 CTCES 627 (680)
T ss_dssp BCCCC
T ss_pred cCCcc
Confidence 98774
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.6e-63 Score=621.67 Aligned_cols=585 Identities=23% Similarity=0.206 Sum_probs=410.9
Q ss_pred ceeecccCccCCCCCccccCCCCCceEEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecC
Q 001274 99 VEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSN 178 (1109)
Q Consensus 99 ~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 178 (1109)
+.++.++++++ .+|..+. +++++|+|++|.+++..+..+..+++|++|+|++|.+++..|..++++++|++|+|++|
T Consensus 7 ~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 34566666665 3555443 56666666666666555555666666666666666666555555666666666666666
Q ss_pred CCCCCCCcccccccccceeccccccccCCCCccccccccchhhhcccccccccCchhhhccccccceecccccccCCCCC
Q 001274 179 NLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLSGEIPP 258 (1109)
Q Consensus 179 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 258 (1109)
++++..+..|+++++|++|++++|++++..|..|+++++|++|+|++|.+++..|..+.++++|++|+|
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L----------- 152 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL----------- 152 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEEC-----------
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEc-----------
Confidence 655333334555555555555555555444444555555555555555554444444444444444444
Q ss_pred CccccccccceeeeeccceecCchhhh--ccCccceEEeecccccCccCcccCCCCcCcEEEccCCcccCCCccccc---
Q 001274 259 TIGNIQSLELLALHENSFSGGLPKELG--KLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELG--- 333 (1109)
Q Consensus 259 ~l~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--- 333 (1109)
++|.+++..+..++ .+++|++|++++|.+++..|..+..+.+|+.|++++|.+.+.....+.
T Consensus 153 -------------~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l 219 (680)
T 1ziw_A 153 -------------SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219 (680)
T ss_dssp -------------CSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH
T ss_pred -------------cCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh
Confidence 44444444443332 234455555555555544444455555555555555444321111110
Q ss_pred CCCCcceEecccccccCcccccccCCCC--ccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCc
Q 001274 334 LIPNLCLLQLFENMLQGSIPRELGQLTQ--LHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLS 411 (1109)
Q Consensus 334 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~ 411 (1109)
..++|+.|++++|.+.+..|.+|..++. |++|++++|++++..|..|.++++|+.|++++|++.+..|..+..+++|+
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (680)
T 1ziw_A 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence 1245555555555555555555555433 66666666666655555666666666666666666666666666666666
Q ss_pred EEEeccccccC-----ccc----hhhhcccccceeecCCccccCCCCCCCccccccceeeccccccc--ccCCccccCC-
Q 001274 412 VLDVSMNNLDG-----SIP----PHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLT--GSLPIEFYNL- 479 (1109)
Q Consensus 412 ~L~Ls~N~l~~-----~~~----~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l- 479 (1109)
+|++++|...+ .+| ..|..+++|++|++++|.+++..+..|..+++|++|++++|.+. ...+..|..+
T Consensus 300 ~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~ 379 (680)
T 1ziw_A 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379 (680)
T ss_dssp EEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred EEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccc
Confidence 66666554332 122 36778889999999999999888888999999999999998754 3334455544
Q ss_pred -cccceeccccccccCCCCccccccccccEEEccCCccCCCCC-hhhcccccccEEecccCcccccCCcCCCCCCCCCee
Q 001274 480 -QNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIP-SEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRL 557 (1109)
Q Consensus 480 -~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 557 (1109)
++|+.|++++|+++++.|..|..+++|+.|+|++|++++.+| ..|.++++|++|++++|++.+..+..|..+++|+.|
T Consensus 380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 589999999999999999999999999999999999987655 789999999999999999999999999999999999
Q ss_pred ecCCCcCc--cCCCcccccccccceecccccccccccCcccCCCcccceeeccCcccccccc--------ccccccchhh
Q 001274 558 DLSRNQFT--GSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIP--------VALGQLTALQ 627 (1109)
Q Consensus 558 ~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--------~~~~~l~~l~ 627 (1109)
++++|.++ +..|..|..+++|+.|+|++|++++..+..|.++++|++|++++|++++..+ ..+.+++.|+
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence 99999987 5789999999999999999999999889999999999999999999986422 2377888887
Q ss_pred hhhccCCccccccccccccCccccceeecCCCccccCCchhhhccccceEEEccCcccccccCCCc--ccccccCCcccC
Q 001274 628 IALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIPASMGEQMSLLVCNLSNNNLVGTVPNTT--VFRRIDSSNFAG 705 (1109)
Q Consensus 628 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g~~p~~~--~~~~~~~~~~~~ 705 (1109)
.|+|++|+++...+..|+++++|+.|||++|+|++..|..|..+++|++|+|++|++++..|... .+..+....+.|
T Consensus 540 -~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 540 -ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp -EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred -EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence 59999999997666789999999999999999997666778999999999999999999777532 456677778999
Q ss_pred CCCccc
Q 001274 706 NRGLCM 711 (1109)
Q Consensus 706 n~~~c~ 711 (1109)
||..|.
T Consensus 619 N~~~c~ 624 (680)
T 1ziw_A 619 NPFDCT 624 (680)
T ss_dssp CCCCBC
T ss_pred CCcccC
Confidence 999993
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-58 Score=571.34 Aligned_cols=533 Identities=20% Similarity=0.211 Sum_probs=440.9
Q ss_pred EEeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCceEEccCCcccccCCchhhccccceEEEccccc
Q 001274 76 SVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENY 155 (1109)
Q Consensus 76 ~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 155 (1109)
.+++.+.++. .+|..+. +++++|+|++|.+++..|..|+++++|++|+|++|++.+..|..+..+++|++|+|++|.
T Consensus 16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 3455556655 3455554 378999999999999889999999999999999999999999999999999999999999
Q ss_pred ccccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccccccCCCCccccccccchhhhcccccccccCchh
Q 001274 156 IFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSE 235 (1109)
Q Consensus 156 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 235 (1109)
+++..|..|+++++|++|+|++|++++..|..++++++|++|++++|.+++..++.+..+++|++|++++|.+++..|..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 99999999999999999999999999877889999999999999999999755455666999999999999999999999
Q ss_pred hhcccccc--ceecccccccCCCCCCccccccccceeeeeccceecCchhhhccCccceEEeecccccC-----ccCccc
Q 001274 236 LEKLRNLT--DLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELNG-----TIPHEL 308 (1109)
Q Consensus 236 l~~l~~L~--~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~-----~~~~~l 308 (1109)
++.+++|+ +|++++|++++..|..+.. .+|+.|++++|. ..+..+..+.+++...+..+.+.+ ..+..+
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHh
Confidence 99999999 8999999999777776654 689999999987 456667777776666555444331 112233
Q ss_pred CCCC--cCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhccccc
Q 001274 309 GNCT--SAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYL 386 (1109)
Q Consensus 309 ~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 386 (1109)
..+. +|++|++++|.+++..+..++.+++|+.|++++|.++ .+|..+..+++|++|++++|++++..|..+.++++|
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence 3333 7888999999988888888888888888888888888 677788888888888888888887778888888888
Q ss_pred ceEEcccccccccCCCc-ccccCcCcEEEeccccccCcc--chhhhcccccceeecCCccccCCCCCCCccccccceeec
Q 001274 387 VDLQLFDNHLEGTIPPH-IGVNSHLSVLDVSMNNLDGSI--PPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLML 463 (1109)
Q Consensus 387 ~~L~L~~N~l~~~~p~~-~~~~~~L~~L~Ls~N~l~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 463 (1109)
+.|++++|.+.+.+|.. +..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+..|..|..+++|++|++
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 88888888887666554 788888888888888888766 667888888888888888888887888888888888888
Q ss_pred ccccccccCCcc-ccCCcccceeccccccccCCCCccccccccccEEEccCCccCCC---CChhhcccccccEEecccCc
Q 001274 464 GQNQLTGSLPIE-FYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGY---IPSEVGNLEHLVTFNISSNS 539 (1109)
Q Consensus 464 ~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~ 539 (1109)
++|++++..+.. |.++++|++|++++|.+++..|..+..+++|++|++++|++++. .+..+..+++|++|+|++|+
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 888888766543 77888888888888888887788888888888888888888762 33567888888888888888
Q ss_pred ccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCcccccccc
Q 001274 540 LSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIP 617 (1109)
Q Consensus 540 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 617 (1109)
+++..|..|.++++|++|+|++|++++..|..|..+++| .|+|++|++++..|..|..+++|+.|++++|++.+..+
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 887778888888888888888888888888888888888 88888888888878888888888888888888876554
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-58 Score=571.42 Aligned_cols=534 Identities=21% Similarity=0.207 Sum_probs=336.1
Q ss_pred eeecccCccCCCCCccccCCCCCceEEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecCC
Q 001274 100 EFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNN 179 (1109)
Q Consensus 100 ~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 179 (1109)
.++.++.+++ .+|..+.. .+++|||++|.+++..|..+..+++|++|+|++|.+++..|.+|+++++|++|+|++|+
T Consensus 16 ~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 4555555555 45554433 56666666666665555555555555555555555555555555555555555555555
Q ss_pred CCCCCCcccccccccceeccccccccCCCCccccccccchhhhcccccccccCchhhhccccccceecccccccCCCCCC
Q 001274 180 LTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLSGEIPPT 259 (1109)
Q Consensus 180 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 259 (1109)
+++..|..|+++++|++|++++|.++ +..|..+.++++|++|+|++|++++..+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~------------------------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 148 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGIS------------------------SIDFIPLHNQKTLESLYLGSNHISSIKLPK 148 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCS------------------------CGGGSCCTTCTTCCEEECCSSCCCCCCCCT
T ss_pred ccccChhhhcccccccEeeccccCcc------------------------cCCcchhccCCcccEEECCCCcccccCccc
Confidence 55444555555555555555555544 443444555666666666666666433333
Q ss_pred ccccccccceeeeeccceecCchhhhccCccc--eEEeecccccCccCcccCCCCcCcEEEccCCcccCCCcccccCCCC
Q 001274 260 IGNIQSLELLALHENSFSGGLPKELGKLSRLK--KLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPN 337 (1109)
Q Consensus 260 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~--~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 337 (1109)
+..+++|++|++++|.+++..|..++.+++|+ .|++++|.+++..|..+.. .+|++|++++|. .++..+..+.+
T Consensus 149 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~ 224 (606)
T 3t6q_A 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKN 224 (606)
T ss_dssp TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTT
T ss_pred ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccc
Confidence 33466777777777777766666777777777 6677777777655554433 567777777765 22333334444
Q ss_pred cceEeccccccc-----CcccccccCCC--CccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcC
Q 001274 338 LCLLQLFENMLQ-----GSIPRELGQLT--QLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHL 410 (1109)
Q Consensus 338 L~~L~L~~n~l~-----~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L 410 (1109)
+....+.-+.+. ...+..+..+. +|+.|++++|++++..+..|.++++|+.|++++|+++ .+|..+..+++|
T Consensus 225 ~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L 303 (606)
T 3t6q_A 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTL 303 (606)
T ss_dssp CEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTC
T ss_pred cchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccC
Confidence 333333222111 11122233222 6777888888887776777777888888888888777 667777777788
Q ss_pred cEEEeccccccCccchhhhcccccceeecCCccccCCCCC-CCccccccceeecccccccccC--CccccCCcccceecc
Q 001274 411 SVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPP-GLKTCRSLMQLMLGQNQLTGSL--PIEFYNLQNLSALEL 487 (1109)
Q Consensus 411 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L 487 (1109)
++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|++++.. +..|.++++|++|++
T Consensus 304 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383 (606)
T ss_dssp CEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEEC
T ss_pred CEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEEC
Confidence 8888888877777777777777777777777777755544 3667777777777777776655 566667777777777
Q ss_pred ccccccCCCCccccccccccEEEccCCccCCCCCh-hhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCcc
Q 001274 488 YQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPS-EVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTG 566 (1109)
Q Consensus 488 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 566 (1109)
++|++.+..|..|..+++|++|++++|++++..|. .+.++++|++|++++|.+++..|..+..+++|++|+|++|++++
T Consensus 384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp CSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 77777666666677777777777777777655443 36666677777777777766666666666677777777776664
Q ss_pred C---CCcccccccccceecccccccccccCcccCCCcccceeeccCccccccccccccccchhhhhhccCCccccccccc
Q 001274 567 S---APEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPY 643 (1109)
Q Consensus 567 ~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~ 643 (1109)
. .+..+..+++|+.|++++|++++..|..|.++++|++|++++|++ ++.+|.
T Consensus 464 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-------------------------~~~~~~ 518 (606)
T 3t6q_A 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL-------------------------TSSSIE 518 (606)
T ss_dssp GEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-------------------------CGGGGG
T ss_pred cccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc-------------------------CcCChh
Confidence 2 224456666666666666666665566666666666555555544 455566
Q ss_pred cccCccccceeecCCCccccCCchhhhccccceEEEccCcccccccCC
Q 001274 644 ELGNLQMLEALYLDDNQLIGEIPASMGEQMSLLVCNLSNNNLVGTVPN 691 (1109)
Q Consensus 644 ~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g~~p~ 691 (1109)
.+..++.| .|||++|++++.+|..+..+++|+.+++++|++.|.++.
T Consensus 519 ~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 519 ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred HhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 66667777 777777777776677777777777777777777776653
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-58 Score=586.37 Aligned_cols=559 Identities=21% Similarity=0.193 Sum_probs=296.0
Q ss_pred eeecccCccCCCCCccccCCCCCceEEccCCcccccCCchhhccccceEEEcccccccccc-cccccCcCCCceEEeecC
Q 001274 100 EFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEI-PEEIGNLTSLEELVIYSN 178 (1109)
Q Consensus 100 ~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n 178 (1109)
..+.++++++. +|. -.++|++|||++|.+++..|..+..+++|++|+|++|.+.+.+ |.+|+++++|++|+|++|
T Consensus 8 ~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 34555555553 454 3456666666666666666666666666666666666554444 455666666666666666
Q ss_pred CCCCCCCcccccccccceeccccccccCCCCcc--ccccccchhhhcccccccccCc-hhhhccccccceecccccccCC
Q 001274 179 NLTGAIPASISKLRQLRVIRAGHNSLSGPIPPE--ISECEGLEVLGLAQNSLEGFLP-SELEKLRNLTDLILWQNHLSGE 255 (1109)
Q Consensus 179 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ 255 (1109)
++++..|..|+++++|++|+|++|.+++.+|.. |+++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 666555666666666666666666665544433 5555555555555555554332 3455555555555555555544
Q ss_pred CCCCcccc--ccccceeeeeccceecCchhhhccCccceEEeecccccCccCcccCCCCcCcEEEccCCcccCCCccccc
Q 001274 256 IPPTIGNI--QSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELG 333 (1109)
Q Consensus 256 ~p~~l~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 333 (1109)
.+..++.+ ++|+.|+++.|.+.+..|..++.+++ .+.+ .+|++|+|++|.+++..+..+.
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~-----------------~~~~-~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN-----------------PFRN-MVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC-----------------TTTT-CCBSEEBCSSCCSSTTTTSGGG
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCC-----------------cccc-CceeEEecCCCcCchhHHHHHH
Confidence 44444444 44555555555554444444333332 0000 0155555555555444443332
Q ss_pred CC---CCcceEeccc---------ccccCcccccccCC--CCccEEEcccCcccCCCCcchhcccccceEEccccccccc
Q 001274 334 LI---PNLCLLQLFE---------NMLQGSIPRELGQL--TQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGT 399 (1109)
Q Consensus 334 ~l---~~L~~L~L~~---------n~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 399 (1109)
.. .+++.|.+.. +.+.+..+..|..+ ++|+.|++++|.+.+..+..|..+++|+.|+|++|++++.
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 305 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC
Confidence 21 2333333332 22222333333332 4566666666666555555555566666666666666555
Q ss_pred CCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCC
Q 001274 400 IPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNL 479 (1109)
Q Consensus 400 ~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 479 (1109)
.|..|..+++|++|+|++|++.+..|..|..+++|++|++++|++++..+..|..+++|++|+|++|.+++. ..+
T Consensus 306 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~ 380 (844)
T 3j0a_A 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFI 380 (844)
T ss_dssp CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSC
T ss_pred ChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCC
Confidence 555555555555555555555555555555555555555555555555455555555555555555555432 124
Q ss_pred cccceeccccccccCCCCccccccccccEEEccCCccCCCCC-hhhcccccccEEecccCcccccCCc-CCCCCCCCCee
Q 001274 480 QNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIP-SEVGNLEHLVTFNISSNSLSGTIPH-ELGNCVNLQRL 557 (1109)
Q Consensus 480 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L 557 (1109)
++|+.|++++|+++.+ |.. ..+++.|++++|++++... ..+.++++|++|+|++|++++..+. .+..+++|+.|
T Consensus 381 ~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L 456 (844)
T 3j0a_A 381 PSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456 (844)
T ss_dssp CSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBC
T ss_pred CCcchhccCCCCcccc-ccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccc
Confidence 4555555555555522 221 2344555555555554211 1233455555555555555433221 23334455555
Q ss_pred ecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCccccccccccccccchhhhhhccCCccc
Q 001274 558 DLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNL 637 (1109)
Q Consensus 558 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l 637 (1109)
+|++|.+++..+. +..+..|.++++|+.|+|++|.+++.+|..+..++.|+ .|+|++|+|
T Consensus 457 ~Ls~N~l~~~~~~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l 516 (844)
T 3j0a_A 457 FLGENMLQLAWET-------------------ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR-GLSLNSNRL 516 (844)
T ss_dssp EEESCCCSSSCCS-------------------CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCS-EEEEESCCC
T ss_pred cCCCCcccccccc-------------------ccchhhhcCcccccEEECCCCcccccChhHccchhhhh-eeECCCCCC
Confidence 5555554411100 22334455555555555555555555555555555554 355666666
Q ss_pred cccccccccCccccceeecCCCccccCCchhhhccccceEEEccCcccccccCCCcccccccCCcccCCCCcccc--CCC
Q 001274 638 SGVIPYELGNLQMLEALYLDDNQLIGEIPASMGEQMSLLVCNLSNNNLVGTVPNTTVFRRIDSSNFAGNRGLCML--GSD 715 (1109)
Q Consensus 638 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~~c~~--~~~ 715 (1109)
++.+|..+. ++|+.|||++|+|++.+|..+. +|+.+++++|++.|.++-. .|......+|..+||. ...
T Consensus 517 ~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~ 587 (844)
T 3j0a_A 517 TVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIY 587 (844)
T ss_dssp SSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCC
T ss_pred CccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCc
Confidence 655555555 7899999999999999987764 7889999999999988743 2222223345555554 345
Q ss_pred ccc
Q 001274 716 CHQ 718 (1109)
Q Consensus 716 c~~ 718 (1109)
|..
T Consensus 588 C~~ 590 (844)
T 3j0a_A 588 CVY 590 (844)
T ss_dssp CSS
T ss_pred cCC
Confidence 643
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.6e-59 Score=575.17 Aligned_cols=487 Identities=17% Similarity=0.235 Sum_probs=377.6
Q ss_pred hhHHHHHHHHHHhcCCC-CC-------CCCCCCCCCCCCCcc---ceeeecC-CeEEEEeccCccccccccccccCcccc
Q 001274 31 TEEGVSLLEFKASLIDP-SN-------NLESWNSSDMTPCNW---IGVECTD-FKVTSVDLHGLNLSGILSPRICDLPRL 98 (1109)
Q Consensus 31 ~~~~~all~~k~~~~~~-~~-------~~~~W~~~~~~~c~w---~gv~C~~-~~v~~l~l~~~~l~g~~~~~~~~l~~L 98 (1109)
..|+.||.+||+++.++ +. ..++|+.+ .|||.| .||+|+. +||++++|++++++|.+|+++++|++|
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L 107 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTEL 107 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccc
Confidence 35889999999998543 22 34589875 599999 9999975 699999999999999999999999999
Q ss_pred ceeecccCcc------CC------CCCccccCCCCCceEEccCCcccccCCchhhc-cccceEEEcc-------------
Q 001274 99 VEFNISMNFV------TG------SIPTDLANCSSLEILDLCTNRLHGVIPFQLFF-INTLRKLYLC------------- 152 (1109)
Q Consensus 99 ~~L~ls~n~~------~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~L~------------- 152 (1109)
++|+|++|.+ .| .+|... +..|+ +++++|.+.+.+|..+.. +..+..+++.
T Consensus 108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 184 (636)
T 4eco_A 108 EVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184 (636)
T ss_dssp CEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred eEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence 9999999976 44 566554 66777 999999999988877663 2223333332
Q ss_pred -------cccccccccccccCcCCCceEEeecCCCCCC-----------------CCcccc--cccccceeccccccccC
Q 001274 153 -------ENYIFGEIPEEIGNLTSLEELVIYSNNLTGA-----------------IPASIS--KLRQLRVIRAGHNSLSG 206 (1109)
Q Consensus 153 -------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~l~~ 206 (1109)
.|.++| +|++|+++++|++|+|++|++++. +|..++ ++++|++|++++|++.+
T Consensus 185 ~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263 (636)
T ss_dssp TTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred hhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence 688998 999999999999999999999986 999999 99999999999999999
Q ss_pred CCCccccccccchhhhccccc-ccc-cCchhhhcc------ccccceecccccccCCCCC--Cccccccccceeeeeccc
Q 001274 207 PIPPEISECEGLEVLGLAQNS-LEG-FLPSELEKL------RNLTDLILWQNHLSGEIPP--TIGNIQSLELLALHENSF 276 (1109)
Q Consensus 207 ~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l 276 (1109)
.+|..|+++++|++|+|++|+ +++ .+|..++++ ++|++|+|++|+++ .+|. .++++++|++|++++|++
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence 999999999999999999998 998 899999887 99999999999999 8888 899999999999999999
Q ss_pred eecCchhhhccCccceEEeecccccCccCcccCCCCc-CcEEEccCCcccCCCcccccCCC--CcceEecccccccCccc
Q 001274 277 SGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTS-AVEIDLSENQLTGFIPRELGLIP--NLCLLQLFENMLQGSIP 353 (1109)
Q Consensus 277 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p 353 (1109)
+|.+| .++++++|++|++++|+++ .+|..+.++++ |++|++++|+++ .+|..+...+ +|+.|++++|.+.+.+|
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred ccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 98999 8999999999999999998 88888999998 999999999998 6777776654 78888888888888888
Q ss_pred cccc-------CCCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccch
Q 001274 354 RELG-------QLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPP 426 (1109)
Q Consensus 354 ~~l~-------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~ 426 (1109)
..+. .+++|++|+|++|+++...+..+..+++|+.|+|++|+++ .+|..+.... +.
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~----------------~~ 482 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE----------------NE 482 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET----------------TE
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc----------------cc
Confidence 8877 7778888888888888444444556788888888888877 4444332211 00
Q ss_pred hhhcccccceeecCCccccCCCCCCCc--cccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccc
Q 001274 427 HLCMYQKLIFLSLGSNRLSGNIPPGLK--TCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLR 504 (1109)
Q Consensus 427 ~l~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 504 (1109)
.+.++++|++|+|++|+++ .+|..+. .+++|++|+|++|++++ +|..+.++++|++|+|++|+
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~------------- 547 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR------------- 547 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB-------------
T ss_pred cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc-------------
Confidence 0112235555555555555 3444443 55566666666666665 55566666666666666554
Q ss_pred cccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCcc
Q 001274 505 NLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTG 566 (1109)
Q Consensus 505 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 566 (1109)
++++|++.+.+|..++++++|++|+|++|+++ .+|..+. ++|+.|||++|++..
T Consensus 548 -----~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 548 -----DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp -----CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred -----ccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 45566666666666666777777777777773 5666554 577777777776653
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.6e-57 Score=559.51 Aligned_cols=539 Identities=20% Similarity=0.182 Sum_probs=430.9
Q ss_pred CCCCccceeeecCCeEEEEeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCceEEccCCcccccCCc
Q 001274 59 MTPCNWIGVECTDFKVTSVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPF 138 (1109)
Q Consensus 59 ~~~c~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 138 (1109)
.+||.|. |. -..+++++++++ .+|..+. ++|++|+|++|.+++..|..++++++|++|+|++|.+++..|.
T Consensus 4 ~~~c~~~---~~---~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~ 74 (606)
T 3vq2_A 4 LNPCIEV---VP---NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74 (606)
T ss_dssp --CCEEE---ET---TTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCceec---CC---CCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHH
Confidence 3668772 21 124677777776 3455444 7899999999999998888999999999999999999998899
Q ss_pred hhhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccccccC-CCCcccccccc
Q 001274 139 QLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSG-PIPPEISECEG 217 (1109)
Q Consensus 139 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~ 217 (1109)
.+..+++|++|+|++|.+++..|..|+++++|++|+|++|++++..|..++++++|++|++++|.+++ .+|..|+++++
T Consensus 75 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 154 (606)
T 3vq2_A 75 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT
T ss_pred HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCC
Confidence 99999999999999999999889999999999999999999998888899999999999999999986 67999999999
Q ss_pred chhhhcccccccccCchhhhcccccc----ceecccccccCCCCCCccccccccceeeeeccce-ecCchhhhccCccce
Q 001274 218 LEVLGLAQNSLEGFLPSELEKLRNLT----DLILWQNHLSGEIPPTIGNIQSLELLALHENSFS-GGLPKELGKLSRLKK 292 (1109)
Q Consensus 218 L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~ 292 (1109)
|++|+|++|++++..|..++.+++|+ +|++++|.+++..+..+... +|+.|++++|.++ +..|..++++++|+.
T Consensus 155 L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 233 (606)
T 3vq2_A 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHV 233 (606)
T ss_dssp CCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred CCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccc
Confidence 99999999999999899899888776 79999999996555555554 9999999999987 567888999999999
Q ss_pred EEeecccccCc------cCcccCCCC--cCcEEEc-cCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCcc
Q 001274 293 LYVYTNELNGT------IPHELGNCT--SAVEIDL-SENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLH 363 (1109)
Q Consensus 293 L~l~~n~l~~~------~~~~l~~l~--~L~~L~L-s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 363 (1109)
+++..+.+.+. .+..+..+. +++.+++ ..|.+.+.+|. +..+++|+.|++++|.+.. +| .+..+++|+
T Consensus 234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~ 310 (606)
T 3vq2_A 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQ 310 (606)
T ss_dssp EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCS
T ss_pred ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCC
Confidence 99987665421 111222222 4566777 67778777776 7888888888888888864 44 778888888
Q ss_pred EEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCcc--chhhhcccccceeecCC
Q 001274 364 KLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSI--PPHLCMYQKLIFLSLGS 441 (1109)
Q Consensus 364 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~--~~~l~~l~~L~~L~L~~ 441 (1109)
+|++++|++ +.+| .+ .+++|+.|++++|...+.. .+..+++|++|++++|++++.. +..+..+++|++|++++
T Consensus 311 ~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 311 SLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp EEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred EEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 888888888 4677 44 8888888888888654433 5667888888888888887663 77788888888888888
Q ss_pred ccccCCCCCCCccccccceeecccccccccCC-ccccCCcccceeccccccccCCCCccccccccccEEEccCCccCC-C
Q 001274 442 NRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLP-IEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVG-Y 519 (1109)
Q Consensus 442 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~ 519 (1109)
|.+++ +|..+..+++|++|++++|++.+..| ..|.++++|++|++++|.+.+..|..+..+++|++|++++|++++ .
T Consensus 386 n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 386 NGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464 (606)
T ss_dssp CSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Ccccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 88875 45777778888888888888877766 577778888888888888877777778888888888888888776 3
Q ss_pred CChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCC
Q 001274 520 IPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGL 599 (1109)
Q Consensus 520 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 599 (1109)
+|..++++++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|+++ .+|..+..+
T Consensus 465 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l 543 (606)
T 3vq2_A 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF 543 (606)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS
T ss_pred hHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh
Confidence 6777777888888888888887777777788888888888888887777777888888888888888877 455557777
Q ss_pred c-ccceeeccCcccccccc
Q 001274 600 A-RLTELQMGGNIFSGSIP 617 (1109)
Q Consensus 600 ~-~L~~L~l~~N~l~~~~p 617 (1109)
+ +|+.|++++|++.+..+
T Consensus 544 ~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 544 PKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CTTCCEEECCSCCCCCSST
T ss_pred cccCcEEEccCCCcccCCc
Confidence 6 47888888887775443
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.7e-57 Score=569.55 Aligned_cols=508 Identities=19% Similarity=0.228 Sum_probs=365.3
Q ss_pred chhHHHHHHHHHHhcCCCCCCCCCCCCCC----CCC--Ccc------------ceeeecC-CeEEEEeccCccccccccc
Q 001274 30 LTEEGVSLLEFKASLIDPSNNLESWNSSD----MTP--CNW------------IGVECTD-FKVTSVDLHGLNLSGILSP 90 (1109)
Q Consensus 30 ~~~~~~all~~k~~~~~~~~~~~~W~~~~----~~~--c~w------------~gv~C~~-~~v~~l~l~~~~l~g~~~~ 90 (1109)
..+|++||++||+++.|| +|+.++ .+| |.| .||+|+. +||++|+|++++|.|.+|+
T Consensus 267 ~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp HHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG
T ss_pred chHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch
Confidence 356899999999999887 887653 355 999 9999984 7999999999999999999
Q ss_pred cccCccccceeec-ccCccCCCCCccccCC----CCCceEEc------------cCCcccccC-----------Cchhhc
Q 001274 91 RICDLPRLVEFNI-SMNFVTGSIPTDLANC----SSLEILDL------------CTNRLHGVI-----------PFQLFF 142 (1109)
Q Consensus 91 ~~~~l~~L~~L~l-s~n~~~~~~p~~l~~l----~~L~~L~L------------s~n~l~~~~-----------~~~l~~ 142 (1109)
+|++|++|+.|+| ++|.++|..|-..... +..+...+ ....+.+.. +.....
T Consensus 342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~ 421 (876)
T 4ecn_A 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421 (876)
T ss_dssp GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence 9999999999999 8999988855332111 00000000 000000000 111112
Q ss_pred cccceEEEccc--ccccccccccccCcCCCceEEeecCCCCC-----------------CCCcccc--cccccceecccc
Q 001274 143 INTLRKLYLCE--NYIFGEIPEEIGNLTSLEELVIYSNNLTG-----------------AIPASIS--KLRQLRVIRAGH 201 (1109)
Q Consensus 143 l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~l~~ 201 (1109)
...++.+.+.. |.+++ +|..|+++++|++|+|++|+|++ .+|..++ ++++|++|+|++
T Consensus 422 ~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 422 RISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred ccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence 22344444443 77777 77778888888888888888877 3788877 888888888888
Q ss_pred ccccCCCCccccccccchhhhccccc-ccc-cCchhhhccc-------cccceecccccccCCCCC--Ccccccccccee
Q 001274 202 NSLSGPIPPEISECEGLEVLGLAQNS-LEG-FLPSELEKLR-------NLTDLILWQNHLSGEIPP--TIGNIQSLELLA 270 (1109)
Q Consensus 202 n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~ 270 (1109)
|++.+.+|..|+++++|++|+|++|+ +++ .+|..+++++ +|++|+|++|+++ .+|. .++++++|++|+
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLD 579 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEE
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEE
Confidence 88888888888888888888888887 777 7787777776 8888888888888 7887 888888888888
Q ss_pred eeeccceecCchhhhccCccceEEeecccccCccCcccCCCCc-CcEEEccCCcccCCCcccccCCCC--cceEeccccc
Q 001274 271 LHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTS-AVEIDLSENQLTGFIPRELGLIPN--LCLLQLFENM 347 (1109)
Q Consensus 271 L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~n~ 347 (1109)
|++|+++ .+| .|+++++|+.|++++|.++ .+|..+.++++ |++|+|++|+++ .+|..+..++. |+.|++++|.
T Consensus 580 Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 580 CVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp CTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred CCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCc
Confidence 8888888 777 7888888888888888888 78888888888 888888888888 66776666544 7788888887
Q ss_pred ccCcccccc---c--CCCCccEEEcccCcccCCCCcc-hhcccccceEEcccccccccCCCcccccCcCcEEEecccccc
Q 001274 348 LQGSIPREL---G--QLTQLHKLDLSINNLTGTIPLE-FQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLD 421 (1109)
Q Consensus 348 l~~~~p~~l---~--~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~ 421 (1109)
+.+.+|... . .+++|++|+|++|+++ .+|.. +..+++|+.|+|++|+++ .+|..+....
T Consensus 656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~------------- 720 (876)
T 4ecn_A 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK------------- 720 (876)
T ss_dssp TTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT-------------
T ss_pred CCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc-------------
Confidence 777655322 2 2347888888888887 44444 446777888888777777 4444332211
Q ss_pred CccchhhhcccccceeecCCccccCCCCCCCc--cccccceeecccccccccCCccccCCcccceeccccccccCCCCcc
Q 001274 422 GSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLK--TCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPE 499 (1109)
Q Consensus 422 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 499 (1109)
+..+.++++|+.|+|++|+|+ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+|++|+
T Consensus 721 ---~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~-------- 787 (876)
T 4ecn_A 721 ---DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR-------- 787 (876)
T ss_dssp ---TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB--------
T ss_pred ---cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC--------
Confidence 001122335555555555555 4455554 56666666666666665 56666677777777777765
Q ss_pred ccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccc
Q 001274 500 IGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLE 579 (1109)
Q Consensus 500 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 579 (1109)
++++|++.+.+|..+.++++|+.|+|++|+| +.+|..+. ++|+.|||++|++....+..+.....+.
T Consensus 788 ----------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~ 854 (876)
T 4ecn_A 788 ----------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAG 854 (876)
T ss_dssp ----------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTT
T ss_pred ----------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccch
Confidence 5667777777888888888888888888888 47777765 5888888888888766677777777777
Q ss_pred eecccccccc
Q 001274 580 LLKLSDNKLT 589 (1109)
Q Consensus 580 ~L~Ls~N~l~ 589 (1109)
.+.|.+|++.
T Consensus 855 ~~~L~~n~~~ 864 (876)
T 4ecn_A 855 MYVLLYDKTQ 864 (876)
T ss_dssp CCEEECCTTS
T ss_pred heeecCCCcc
Confidence 8888888766
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-57 Score=574.30 Aligned_cols=533 Identities=20% Similarity=0.207 Sum_probs=437.7
Q ss_pred EEeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCceEEccCCcccccC-CchhhccccceEEEcccc
Q 001274 76 SVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVI-PFQLFFINTLRKLYLCEN 154 (1109)
Q Consensus 76 ~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n 154 (1109)
.+|.++++++.. |. -.++|+.|+|++|.+++..|..++++++|++|||++|...+.+ |..+..+++|++|+|++|
T Consensus 8 ~~dcs~~~L~~v-P~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQV-PQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCC-CS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCCC-CC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 356777788754 33 4589999999999999999999999999999999999777776 778999999999999999
Q ss_pred cccccccccccCcCCCceEEeecCCCCCCCCcc--cccccccceeccccccccCCCC-ccccccccchhhhccccccccc
Q 001274 155 YIFGEIPEEIGNLTSLEELVIYSNNLTGAIPAS--ISKLRQLRVIRAGHNSLSGPIP-PEISECEGLEVLGLAQNSLEGF 231 (1109)
Q Consensus 155 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~ 231 (1109)
.+++..|+.|+++++|++|+|++|++++.+|.. |+++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 999999999999999999999999999877766 9999999999999999997765 5799999999999999999999
Q ss_pred Cchhhhcc--ccccceecccccccCCCCCCcccccc------ccceeeeeccceecCchhhhcc---CccceEEeecccc
Q 001274 232 LPSELEKL--RNLTDLILWQNHLSGEIPPTIGNIQS------LELLALHENSFSGGLPKELGKL---SRLKKLYVYTNEL 300 (1109)
Q Consensus 232 ~p~~l~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~------L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~l~~n~l 300 (1109)
.+..+..+ ++|+.|+|++|.+++..|..++.+.+ |+.|++++|.+++..|..+... ++++.|.++.+.+
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 99999988 89999999999999999888877765 9999999999888888777653 5667777765443
Q ss_pred cCccCcccCCCCcCcEEEccCCcccCCCcccccCC--CCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCc
Q 001274 301 NGTIPHELGNCTSAVEIDLSENQLTGFIPRELGLI--PNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPL 378 (1109)
Q Consensus 301 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 378 (1109)
.. +++.+.+.+..+..+..+ ++|+.|++++|.+.+..+..|..+++|+.|+|++|++++..|.
T Consensus 244 ~~---------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 244 GA---------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp BC---------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred cc---------------cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 21 123344444444455544 7899999999999989999999999999999999999998899
Q ss_pred chhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCcccccc
Q 001274 379 EFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSL 458 (1109)
Q Consensus 379 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 458 (1109)
.|.++++|+.|+|++|.+++..|..|..+++|++|++++|++.+..+..|..+++|++|+|++|.+++. ..+++|
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L 383 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSI 383 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSC
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCc
Confidence 999999999999999999988899999999999999999999998888999999999999999999853 237899
Q ss_pred ceeecccccccccCCccccCCcccceeccccccccCCCC-ccccccccccEEEccCCccCCCCCh-hhcccccccEEecc
Q 001274 459 MQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIP-PEIGKLRNLERLHLSENYFVGYIPS-EVGNLEHLVTFNIS 536 (1109)
Q Consensus 459 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls 536 (1109)
+.|++++|+++. +|.. ..+++.|++++|++++... ..+..+++|+.|+|++|++++..+. .+..+++|+.|+|+
T Consensus 384 ~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 384 PDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp SEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred chhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCC
Confidence 999999999994 4443 4679999999999997532 2456899999999999999976543 46678999999999
Q ss_pred cCcccc-----cCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCcc
Q 001274 537 SNSLSG-----TIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNI 611 (1109)
Q Consensus 537 ~N~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 611 (1109)
+|.+++ ..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..|..+. ++|+.|++++|
T Consensus 460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N- 536 (844)
T 3j0a_A 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN- 536 (844)
T ss_dssp SCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE-
T ss_pred CCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC-
Confidence 999973 3344566666666666666666666666666666666666666666655555444 45555555554
Q ss_pred ccccccccccccchhhhhhccCCccccccccccccCccccceeecCCCccccCCc
Q 001274 612 FSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIP 666 (1109)
Q Consensus 612 l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip 666 (1109)
+|++.+|..|. +|+.|+|++|++.+..+
T Consensus 537 ------------------------~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 537 ------------------------QLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp ------------------------CCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred ------------------------cCCCCChhHhC---CcCEEEecCCCcccccc
Confidence 55555554443 67788888888877554
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.4e-57 Score=559.75 Aligned_cols=539 Identities=19% Similarity=0.148 Sum_probs=405.0
Q ss_pred CCceEEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccc
Q 001274 121 SLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAG 200 (1109)
Q Consensus 121 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 200 (1109)
..++++.+++.++ .+|..+. +++++|+|++|.+++..+..|+++++|++|+|++|++++..|..|+++++|++|+++
T Consensus 12 ~~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 12 PNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 3467888888887 5666553 788899999999888777788888999999999888887778888888888888888
Q ss_pred cccccCCCCccccccccchhhhcccccccccCchhhhccccccceecccccccC-CCCCCccccccccceeeeeccceec
Q 001274 201 HNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLSG-EIPPTIGNIQSLELLALHENSFSGG 279 (1109)
Q Consensus 201 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~ 279 (1109)
+|.+++..|..|+++++|++|+|++|.+++..+..++++++|++|+|++|++++ .+|..++++++|++|++++|++++.
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 888887778888888888888888888887776778888888888888888875 5677888888888888888888877
Q ss_pred CchhhhccCccc----eEEeecccccCccCcccCCCCcCcEEEccCCccc-CCCcccccCCCCcceEecccccccCcccc
Q 001274 280 LPKELGKLSRLK----KLYVYTNELNGTIPHELGNCTSAVEIDLSENQLT-GFIPRELGLIPNLCLLQLFENMLQGSIPR 354 (1109)
Q Consensus 280 ~p~~l~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 354 (1109)
.|..++.+++|+ +|++++|.+++..+..+... +|++|++++|.++ +..|..++.+++|+.+++..+.+.+..
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-- 245 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER-- 245 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--
T ss_pred ChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--
Confidence 777777766665 67777777775444444443 7777777777765 344555666666666665544332210
Q ss_pred cccCCCCccEEEcccCcccCCCCcchhccc--ccceEEc-ccccccccCCCcccccCcCcEEEeccccccCccchhhhcc
Q 001274 355 ELGQLTQLHKLDLSINNLTGTIPLEFQNLT--YLVDLQL-FDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMY 431 (1109)
Q Consensus 355 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L-~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l 431 (1109)
.+....+..+.++. .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+.. +| .+..+
T Consensus 246 ----------------~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~ 306 (606)
T 3vq2_A 246 ----------------NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKH 306 (606)
T ss_dssp ----------------CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTT
T ss_pred ----------------cccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hcccc
Confidence 00001111122221 3455555 55666666665 6667777777777777753 33 66667
Q ss_pred cccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCC--CCccccccccccEE
Q 001274 432 QKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGL--IPPEIGKLRNLERL 509 (1109)
Q Consensus 432 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L 509 (1109)
++|+.|++++|.+ +.+| .+ .+++|++|++++|+..+.. .+..+++|++|++++|++++. .|..+..+++|++|
T Consensus 307 ~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 307 FKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred ccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence 7777777777777 4555 34 7777777777777554333 566778888888888887765 36677778888888
Q ss_pred EccCCccCCCCChhhcccccccEEecccCcccccCC-cCCCCCCCCCeeecCCCcCccCCCcccccccccceeccccccc
Q 001274 510 HLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIP-HELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKL 588 (1109)
Q Consensus 510 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 588 (1109)
++++|.+++ +|..+.++++|+.|++++|++++..| ..+.++++|++|++++|.+++..|..+..+++|+.|++++|++
T Consensus 382 ~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 382 DLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp ECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence 888888775 55777788888888888888887766 6778888888888888888877788888888888888888888
Q ss_pred cc-ccCcccCCCcccceeeccCccccccccccccccchhhhhhccCCccccccccccccCccccceeecCCCccccCCch
Q 001274 589 TG-AIPSSLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIPA 667 (1109)
Q Consensus 589 ~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~ 667 (1109)
++ .+|..|+.+++|++|++++|.+++..|..+.+++.|+ .|+|++|++++.+|..|+.+++|++|||++|+|+ .+|.
T Consensus 461 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ-LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC-EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred CCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC-EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 87 4678888888888888888888888888888888886 4888888898888999999999999999999998 7888
Q ss_pred hhhccc-cceEEEccCcccccccCCC
Q 001274 668 SMGEQM-SLLVCNLSNNNLVGTVPNT 692 (1109)
Q Consensus 668 ~~~~l~-~L~~l~ls~N~l~g~~p~~ 692 (1109)
.+..++ +|+++++++|++.|.++..
T Consensus 539 ~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred hHhhhcccCcEEEccCCCcccCCccH
Confidence 899987 5999999999999988753
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-51 Score=504.36 Aligned_cols=512 Identities=21% Similarity=0.203 Sum_probs=363.6
Q ss_pred EeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCceEEccCCcccccCCchhhccccceEEEcccccc
Q 001274 77 VDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYI 156 (1109)
Q Consensus 77 l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 156 (1109)
++..+.++.. +|..+. ++++.|+|++|.+++..+.+++++++|++|||++|++++..|..+..+++|++|+|++|.+
T Consensus 12 ~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCSS-CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCccc-cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 5555556553 444332 5799999999999998888999999999999999999988888899999999999999999
Q ss_pred cccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccccccC-CCCccccccccchhhhcccccccccCchh
Q 001274 157 FGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSG-PIPPEISECEGLEVLGLAQNSLEGFLPSE 235 (1109)
Q Consensus 157 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 235 (1109)
++..|..|+++++|++|++++|++++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|++++..|..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 98888999999999999999999997666689999999999999999987 57999999999999999999999888899
Q ss_pred hhccccc----cceecccccccCCCCCCccccccccceeeeecccee-cCchhhhccCccceEEeecccccCccCcccCC
Q 001274 236 LEKLRNL----TDLILWQNHLSGEIPPTIGNIQSLELLALHENSFSG-GLPKELGKLSRLKKLYVYTNELNGTIPHELGN 310 (1109)
Q Consensus 236 l~~l~~L----~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 310 (1109)
++.+++| ++|++++|.+++..|..+..+ +|+.|++++|.... .++..+..+++++.+.+..+.+...
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~------- 240 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE------- 240 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC-------
T ss_pred ccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc-------
Confidence 9999998 889999999998777777766 89999999885432 3566778888888877765443311
Q ss_pred CCcCcEEEccCCcccCCCcccccCCC--CcceEecccc-cccCcccccccCCCCccEEEcccCcccCCCCcchhcccccc
Q 001274 311 CTSAVEIDLSENQLTGFIPRELGLIP--NLCLLQLFEN-MLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLV 387 (1109)
Q Consensus 311 l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 387 (1109)
.+++ ++.... +..++ .++.+++.++ .+.+..|..+..+++|++|++++|.++ .+|..+..+ +|+
T Consensus 241 -~~l~--~~~~~~--------~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~ 307 (570)
T 2z63_A 241 -GNLE--KFDKSA--------LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQ 307 (570)
T ss_dssp -SSCE--ECCTTT--------TGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCS
T ss_pred -hhhh--hcchhh--------hccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-Ccc
Confidence 1111 011111 11111 1333444444 444444555555555555555555554 344444444 555
Q ss_pred eEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCC--CCCCccccccceeeccc
Q 001274 388 DLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNI--PPGLKTCRSLMQLMLGQ 465 (1109)
Q Consensus 388 ~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 465 (1109)
.|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++
T Consensus 308 ~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 382 (570)
T 2z63_A 308 HLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382 (570)
T ss_dssp EEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS
T ss_pred EEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCC
Confidence 5555555554 3332 2445555555555555444333 44555555555555555432 34455556666666666
Q ss_pred ccccccCCccccCCcccceeccccccccCCCC-ccccccccccEEEccCCccCCCCChhhcccccccEEecccCccc-cc
Q 001274 466 NQLTGSLPIEFYNLQNLSALELYQNRFSGLIP-PEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLS-GT 543 (1109)
Q Consensus 466 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~ 543 (1109)
|++++..+. |.++++|++|++++|.+.+..| ..+..+++|++|++++|++.+..|..+.++++|++|+|++|+++ +.
T Consensus 383 n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 383 NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp CSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Ccccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcccc
Confidence 666644433 6677777777777777776554 45677777777777777777777777777777777777777776 46
Q ss_pred CCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCccccccccc
Q 001274 544 IPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIPV 618 (1109)
Q Consensus 544 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 618 (1109)
+|..+..+++|++|+|++|++++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++++..|.
T Consensus 462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 777777777777777777777776677777777777777777777777777777777777777777777776654
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-51 Score=500.72 Aligned_cols=488 Identities=19% Similarity=0.188 Sum_probs=368.7
Q ss_pred eEEEEeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCceEEccCCcccccCCchhhccccceEEEcc
Q 001274 73 KVTSVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLC 152 (1109)
Q Consensus 73 ~v~~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 152 (1109)
+++.+||+++++++..+.++.++++|++|+|++|.+++..|..++++++|++|+|++|.+++..|..+..+++|++|+|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 68899999999999888899999999999999999999888899999999999999999998888999999999999999
Q ss_pred cccccccccccccCcCCCceEEeecCCCCC-CCCcccccccccceeccccccccCCCCccccccccc----hhhhccccc
Q 001274 153 ENYIFGEIPEEIGNLTSLEELVIYSNNLTG-AIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGL----EVLGLAQNS 227 (1109)
Q Consensus 153 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L----~~L~L~~n~ 227 (1109)
+|.+++..+..++++++|++|+|++|.+++ .+|..|+++++|++|++++|.+++..|..++.+++| ++|++++|.
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence 999987766689999999999999999997 579999999999999999999998888899999999 899999999
Q ss_pred ccccCchhhhccccccceecccccccC-CCCCCccccccccceeeeecccee------cCchhhhccCc--cceEEeecc
Q 001274 228 LEGFLPSELEKLRNLTDLILWQNHLSG-EIPPTIGNIQSLELLALHENSFSG------GLPKELGKLSR--LKKLYVYTN 298 (1109)
Q Consensus 228 l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~------~~p~~l~~l~~--L~~L~l~~n 298 (1109)
+++..|..+..+ +|+.|++++|.... .++..+..++.++.+.+..+.+.. .....+..+++ ++.++++++
T Consensus 189 l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 189 MNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred ceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 999888888766 89999999986542 345566677777777666543321 11222232222 334444444
Q ss_pred -cccCccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCC
Q 001274 299 -ELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIP 377 (1109)
Q Consensus 299 -~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 377 (1109)
.+.+.+|..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~-------------------------~l~~~~~~~-~L~~L~l~~n~~~-~l~ 320 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-------------------------RVKDFSYNF-GWQHLELVNCKFG-QFP 320 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEEC-------------------------SCCBCCSCC-CCSEEEEESCBCS-SCC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccch-------------------------hhhhhhccC-CccEEeeccCccc-ccC
Confidence 444445555555555555555555554 244445555 5666666666655 333
Q ss_pred cchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCcc--chhhhcccccceeecCCccccCCCCCCCccc
Q 001274 378 LEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSI--PPHLCMYQKLIFLSLGSNRLSGNIPPGLKTC 455 (1109)
Q Consensus 378 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 455 (1109)
. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++.+.. +..+..+++|++|++++|.+++..+. +..+
T Consensus 321 ~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l 395 (570)
T 2z63_A 321 T--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGL 395 (570)
T ss_dssp B--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETC
T ss_pred c--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cccc
Confidence 3 3455666666666665544443 45666666666666666543 56666777777777777777654443 6677
Q ss_pred cccceeecccccccccCC-ccccCCcccceeccccccccCCCCccccccccccEEEccCCccC-CCCChhhcccccccEE
Q 001274 456 RSLMQLMLGQNQLTGSLP-IEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFV-GYIPSEVGNLEHLVTF 533 (1109)
Q Consensus 456 ~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L 533 (1109)
++|++|++++|++.+..+ ..|.++++|++|++++|.+.+..|..|..+++|++|++++|+++ +.+|..+..+++|++|
T Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 777777777777776655 45777778888888888887777777778888888888888876 4677777888888888
Q ss_pred ecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccC
Q 001274 534 NISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIP 593 (1109)
Q Consensus 534 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 593 (1109)
+|++|++++..|.+|.++++|++|+|++|++++..|..|..+++|+.|++++|++++..|
T Consensus 476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 888888887777788888888888888888887777777888888888888888876654
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.2e-51 Score=499.08 Aligned_cols=491 Identities=20% Similarity=0.244 Sum_probs=308.1
Q ss_pred CCccceeeecCCeEEEEeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCceEEccCCcccccCCchh
Q 001274 61 PCNWIGVECTDFKVTSVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQL 140 (1109)
Q Consensus 61 ~c~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l 140 (1109)
.|.|.|| |+ +++++++ .+|+.+. ++|++|+|++|.+++..|..++++++|++|+|++|++++..|..+
T Consensus 3 ~C~~~~~-c~--------~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 70 (549)
T 2z81_A 3 SCDASGV-CD--------GRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF 70 (549)
T ss_dssp EECTTSE-EE--------CTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTT
T ss_pred cCCCCce-EE--------CCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhc
Confidence 4999998 84 4455555 3444443 567777777777776666677777777777777777766666666
Q ss_pred hccccceEEEcccccccccccccccCcCCCceEEeecCCCCC-CCCcccccccccceeccccccccCCCCccccccccch
Q 001274 141 FFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTG-AIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLE 219 (1109)
Q Consensus 141 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 219 (1109)
..+++|++|+|++|.+++..|..|+++++|++|+|++|++++ .+|..++++++|++|++++|.+.+.+|
T Consensus 71 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~---------- 140 (549)
T 2z81_A 71 YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR---------- 140 (549)
T ss_dssp TTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC----------
T ss_pred cccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC----------
Confidence 666666666666666665555556666666666666666654 234455555555555555554222222
Q ss_pred hhhcccccccccCchhhhccccccceecccccccCCCCCCccccccccceeeeeccceecCchh-hhccCccceEEeecc
Q 001274 220 VLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGGLPKE-LGKLSRLKKLYVYTN 298 (1109)
Q Consensus 220 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~l~~n 298 (1109)
+..|.++++|++|++++|++++.+|..++.+++|++|+++.|.+.. +|.. ++.+++|++|++++|
T Consensus 141 -------------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 141 -------------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp -------------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESC
T ss_pred -------------HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCC
Confidence 2345555555555555555555555555555555556655555542 2322 344566666666666
Q ss_pred cccCcc--C-cccCCCCcCcEEEccCCcccCCCcc----cccCCCCcceEecccccccCcc------cccccCCCCccEE
Q 001274 299 ELNGTI--P-HELGNCTSAVEIDLSENQLTGFIPR----ELGLIPNLCLLQLFENMLQGSI------PRELGQLTQLHKL 365 (1109)
Q Consensus 299 ~l~~~~--~-~~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~------p~~l~~l~~L~~L 365 (1109)
.+++.. | .....+++|+.|++++|.+++..+. .+..+++|+.+++.+|.+.+.. ...+..+.+|+.|
T Consensus 207 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L 286 (549)
T 2z81_A 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286 (549)
T ss_dssp BCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEE
T ss_pred ccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccc
Confidence 665421 1 1123345566666666655543322 1222333333333333333210 1122334444555
Q ss_pred EcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhh-hcccccceeecCCccc
Q 001274 366 DLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHL-CMYQKLIFLSLGSNRL 444 (1109)
Q Consensus 366 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~L~~N~l 444 (1109)
+++++.+.... .+. .++..+....+|+.|++++|.+. .+|..+ ..+++|++|++++|++
T Consensus 287 ~l~~~~i~~~~--~~~-----------------~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l 346 (549)
T 2z81_A 287 TIRRLHIPQFY--LFY-----------------DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM 346 (549)
T ss_dssp EEESCBCSCGG--GSC-----------------CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCC
T ss_pred cccccccchhh--hcc-----------------cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcc
Confidence 55444433110 000 11111233456777777777776 344444 5677788888888877
Q ss_pred cCCCC---CCCccccccceeecccccccccCC--ccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCC
Q 001274 445 SGNIP---PGLKTCRSLMQLMLGQNQLTGSLP--IEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGY 519 (1109)
Q Consensus 445 ~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 519 (1109)
++.+| ..+..+++|++|++++|++++..+ ..|..+++|++|+|++|+++ .+|..+..+++|++|++++|++++
T Consensus 347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~- 424 (549)
T 2z81_A 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV- 424 (549)
T ss_dssp CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-
T ss_pred ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-
Confidence 76553 346777888888888888876543 45788888999999999888 457788888899999999998875
Q ss_pred CChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCC
Q 001274 520 IPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGL 599 (1109)
Q Consensus 520 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 599 (1109)
+|..+ .++|++|+|++|+|++.+ ..+++|++|+|++|+|+ .+|. ...+++|+.|+|++|++++.+|..|..+
T Consensus 425 l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 496 (549)
T 2z81_A 425 VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRL 496 (549)
T ss_dssp CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcC
Confidence 34333 258899999999988642 57788999999999998 5665 5678899999999999998888888999
Q ss_pred cccceeeccCcccccccc
Q 001274 600 ARLTELQMGGNIFSGSIP 617 (1109)
Q Consensus 600 ~~L~~L~l~~N~l~~~~p 617 (1109)
++|+.|++++|++.+..|
T Consensus 497 ~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 497 TSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TTCCEEECCSSCBCCCHH
T ss_pred cccCEEEecCCCccCCCc
Confidence 999999999999887766
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-50 Score=500.15 Aligned_cols=463 Identities=17% Similarity=0.201 Sum_probs=311.8
Q ss_pred CCCceEEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceecc
Q 001274 120 SSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRA 199 (1109)
Q Consensus 120 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 199 (1109)
.+++.|+|++|.+.|.+|.+++.+++|++|+|++|.+... +..++.. .+...+|... +..|+ +++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~-~~~~~~~-----------~~~~~~~~~~--~~~l~-l~l 145 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN-ERLFGPK-----------GISANMSDEQ--KQKMR-MHY 145 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGT-CCSBSTT-----------SBCTTCCHHH--HHHHH-THH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccC-Ccccccc-----------ccccCchHHH--HHHHH-hhH
Confidence 3677788888888777777777777777777777765211 0001100 0011333333 45566 666
Q ss_pred ccccccCCCCccccc-cccchhhhcccccccccCchhhhccccccceecc--cccccCCCCCCccccccccceeeeeccc
Q 001274 200 GHNSLSGPIPPEISE-CEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILW--QNHLSGEIPPTIGNIQSLELLALHENSF 276 (1109)
Q Consensus 200 ~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~--~N~l~~~~p~~l~~l~~L~~L~L~~N~l 276 (1109)
++|.+.+.+|..++. +..+..+++....+.. .....++.+.+. .|++++ +|..++++++|++|+|++|.+
T Consensus 146 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l 218 (636)
T 4eco_A 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF 218 (636)
T ss_dssp HHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCC
T ss_pred HHhhhccCchhhHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcc
Confidence 666666666666553 3455555555433321 112233333333 466666 666677777777777777776
Q ss_pred eec-----------------Cchhhh--ccCccceEEeecccccCccCcccCCCCcCcEEEccCCc-ccC-CCcccccCC
Q 001274 277 SGG-----------------LPKELG--KLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQ-LTG-FIPRELGLI 335 (1109)
Q Consensus 277 ~~~-----------------~p~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l 335 (1109)
++. +|+.++ ++++|++|++++|.+.+.+|..++++++|++|+|++|+ +++ .+|..++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L 298 (636)
T 4eco_A 219 VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298 (636)
T ss_dssp CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhh
Confidence 664 777777 77777777777777777777777777777777777777 776 677766665
Q ss_pred ------CCcceEecccccccCcccc--cccCCCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCccccc
Q 001274 336 ------PNLCLLQLFENMLQGSIPR--ELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVN 407 (1109)
Q Consensus 336 ------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 407 (1109)
++|+.|++++|.++ .+|. .+..+++|++|++++|+++|.+| .|.++++|+.|+|++|+++ .+|..+..+
T Consensus 299 ~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 375 (636)
T 4eco_A 299 ADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGF 375 (636)
T ss_dssp HHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEE
T ss_pred hccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhh
Confidence 77777777777777 6666 77778888888888888877777 7777888888888888877 677777777
Q ss_pred Cc-CcEEEeccccccCccchhhhccc--ccceeecCCccccCCCCCCCc-------cccccceeecccccccccCCcccc
Q 001274 408 SH-LSVLDVSMNNLDGSIPPHLCMYQ--KLIFLSLGSNRLSGNIPPGLK-------TCRSLMQLMLGQNQLTGSLPIEFY 477 (1109)
Q Consensus 408 ~~-L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~ 477 (1109)
++ |++|++++|+++ .+|..+..+. +|++|++++|++++.+|..+. .+++|++|+|++|+++.+.+..|.
T Consensus 376 ~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~ 454 (636)
T 4eco_A 376 TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454 (636)
T ss_dssp CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH
T ss_pred cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHc
Confidence 77 888888888877 5666666544 788888888888777777777 667777888888877755445566
Q ss_pred CCcccceeccccccccCCCCcccccc-------ccccEEEccCCccCCCCChhhc--ccccccEEecccCcccccCCcCC
Q 001274 478 NLQNLSALELYQNRFSGLIPPEIGKL-------RNLERLHLSENYFVGYIPSEVG--NLEHLVTFNISSNSLSGTIPHEL 548 (1109)
Q Consensus 478 ~l~~L~~L~L~~N~l~~~~p~~~~~l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~ 548 (1109)
.+++|++|+|++|+++.+.+..+..+ ++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+
T Consensus 455 ~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~ 532 (636)
T 4eco_A 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532 (636)
T ss_dssp TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG
T ss_pred cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhh
Confidence 67778888888887774433333333 27777777777777 5666665 77777777777777775 67777
Q ss_pred CCCCCCCeeecC------CCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCcccc
Q 001274 549 GNCVNLQRLDLS------RNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFS 613 (1109)
Q Consensus 549 ~~l~~L~~L~Ls------~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 613 (1109)
.++++|+.|+|+ +|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|++++|++.
T Consensus 533 ~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 777777777773 4556666666666666777777777766 35555544 56666666666655
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7e-50 Score=488.23 Aligned_cols=494 Identities=18% Similarity=0.160 Sum_probs=281.2
Q ss_pred CCCceEEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceecc
Q 001274 120 SSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRA 199 (1109)
Q Consensus 120 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 199 (1109)
+...+.|.++|.++ .+|..+. ++|++|+|++|.+++..|..|+++++|++|+|++|++++..|..|+++++|++|++
T Consensus 5 ~~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 5 DASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp CTTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 33444567777776 4555443 56667777776666666666666666666666666666555566666666666666
Q ss_pred ccccccCCCCccccccccchhhhcccccccc-cCchhhhccccccceecccccccCCCC-CCccccccccceeeeeccce
Q 001274 200 GHNSLSGPIPPEISECEGLEVLGLAQNSLEG-FLPSELEKLRNLTDLILWQNHLSGEIP-PTIGNIQSLELLALHENSFS 277 (1109)
Q Consensus 200 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~ 277 (1109)
++|.+++..|..|+++++|++|+|++|.+++ ..|..+.++++|++|+|++|++.+.+| ..++++++|++|++++|+++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 6666665544445555555555555555554 234455555555555555555322332 34555555555555555555
Q ss_pred ecCchhhhccCccceEEeecccccCccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCccccccc
Q 001274 278 GGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELG 357 (1109)
Q Consensus 278 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 357 (1109)
+..|..++++++|++|+++.|.+.......+..+++|++|++++|++++.... ......
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------~~~~~~ 220 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS---------------------PLPVDE 220 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------CCSSCC
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccc---------------------ccchhh
Confidence 55555555555555555555554422111223345555555555555432100 001122
Q ss_pred CCCCccEEEcccCcccCCCCc----chhcccccceEEcccccccccC------CCcccccCcCcEEEeccccccCccchh
Q 001274 358 QLTQLHKLDLSINNLTGTIPL----EFQNLTYLVDLQLFDNHLEGTI------PPHIGVNSHLSVLDVSMNNLDGSIPPH 427 (1109)
Q Consensus 358 ~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~------p~~~~~~~~L~~L~Ls~N~l~~~~~~~ 427 (1109)
.+++|++|++++|.+++..+. .+..+++|+.|++++|.+.+.. ...+..+.+|+.|+++++.+.....
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-- 298 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-- 298 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG--
T ss_pred hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh--
Confidence 345566666666665543322 2234455555555555554321 1122334445555555444331100
Q ss_pred hhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccc-cCCcccceeccccccccCCCC---cccccc
Q 001274 428 LCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEF-YNLQNLSALELYQNRFSGLIP---PEIGKL 503 (1109)
Q Consensus 428 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p---~~~~~l 503 (1109)
+. ..+..+....+|++|++++|+++ .+|..+ .++++|++|+|++|++++.+| ..++.+
T Consensus 299 ~~-----------------~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 360 (549)
T 2z81_A 299 FY-----------------DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360 (549)
T ss_dssp SC-----------------CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred cc-----------------cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence 00 00111122345666666666665 344433 456777777777777766543 235667
Q ss_pred ccccEEEccCCccCCCCC--hhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCccccccccccee
Q 001274 504 RNLERLHLSENYFVGYIP--SEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELL 581 (1109)
Q Consensus 504 ~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 581 (1109)
++|++|+|++|++++..+ ..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|+++ .+|..+. ++|+.|
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L 436 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVL 436 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEE
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEE
Confidence 777777777777765432 34677777777777777777 56667777777777777777776 3443332 466777
Q ss_pred cccccccccccCcccCCCcccceeeccCccccccccccccccchhhhhhccCCccccccccccccCccccceeecCCCcc
Q 001274 582 KLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQL 661 (1109)
Q Consensus 582 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 661 (1109)
+|++|++++.+ ..+++|++|++++|+++ .+|. .+.+++|++|||++|+|
T Consensus 437 ~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~--------------------------~ip~-~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 437 DVSNNNLDSFS----LFLPRLQELYISRNKLK--------------------------TLPD-ASLFPVLLVMKISRNQL 485 (549)
T ss_dssp ECCSSCCSCCC----CCCTTCCEEECCSSCCS--------------------------SCCC-GGGCTTCCEEECCSSCC
T ss_pred ECCCCChhhhc----ccCChhcEEECCCCccC--------------------------cCCC-cccCccCCEEecCCCcc
Confidence 77777666532 35566666666655554 2333 34567788888888888
Q ss_pred ccCCchhhhccccceEEEccCcccccccCCC
Q 001274 662 IGEIPASMGEQMSLLVCNLSNNNLVGTVPNT 692 (1109)
Q Consensus 662 ~~~ip~~~~~l~~L~~l~ls~N~l~g~~p~~ 692 (1109)
++.+|..+..+++|++|++++|++.|.+|..
T Consensus 486 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 486 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred CCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 8877778888888888888888888888743
No 18
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=3e-50 Score=444.19 Aligned_cols=263 Identities=29% Similarity=0.427 Sum_probs=207.6
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEEe
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEY 881 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 881 (1109)
+++++.++||+|+||+||+|++++ .||||+++.........+.|.+|++++++++|||||+++|++.+ +..++||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy 112 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQW 112 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEc
Confidence 567788999999999999999753 59999998666666667889999999999999999999998864 568999999
Q ss_pred ccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC-
Q 001274 882 MENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY- 960 (1109)
Q Consensus 882 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~- 960 (1109)
|++|+|.++++..... ++|.++..|+.|||+||+||| +++||||||||+|||+++++.+||+|||+|+......
T Consensus 113 ~~gGsL~~~l~~~~~~--l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~ 187 (307)
T 3omv_A 113 CEGSSLYKHLHVQETK--FQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp CSSCBHHHHHHTSCCC--CCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------
T ss_pred CCCCCHHHHHhhcCCC--CCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEEeeccCceecccCCc
Confidence 9999999999765443 999999999999999999999 6799999999999999999999999999998764322
Q ss_pred CCCccccccccceeccccccC---CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhh
Q 001274 961 SKSMSAIAGSYGYIAPEYAYT---MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKR 1037 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1109)
.......+||+.|||||++.+ ++|+.++|||||||++|||+||+.||.+..........+...... |....
T Consensus 188 ~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~--p~~~~---- 261 (307)
T 3omv_A 188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYAS--PDLSK---- 261 (307)
T ss_dssp ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCC--CCSTT----
T ss_pred ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCC--CCccc----
Confidence 223355689999999999864 468999999999999999999999998643222222222211111 10000
Q ss_pred cchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1038 LDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
........+.+++.+||+.||++||||+||+++|+.+....
T Consensus 262 ------~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~l 302 (307)
T 3omv_A 262 ------LYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp ------SCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred ------ccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccC
Confidence 01122346789999999999999999999999998876544
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.4e-48 Score=485.64 Aligned_cols=555 Identities=20% Similarity=0.181 Sum_probs=446.2
Q ss_pred CCCCCCCCCCCCCCCCCccceeeecCCeEEEEeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCceE
Q 001274 46 DPSNNLESWNSSDMTPCNWIGVECTDFKVTSVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEIL 125 (1109)
Q Consensus 46 ~~~~~~~~W~~~~~~~c~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L 125 (1109)
|+...+++|+.+ -|..|..-.|.... +.++.++.+|+. +|+.|. +++++|||++|.|++..|.+|+++++|++|
T Consensus 8 ~~~~~~~~~~~~--~p~~~~~c~~~~~~-~~~~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L 81 (635)
T 4g8a_A 8 DDDDKLAAANSS--IPESWEPCVEVVPN-ITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVL 81 (635)
T ss_dssp -------------------CCSEEEETT-TEEECTTSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCcchhhcccCC--CCCCCCCccccCCC-CEEECCCCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEE
Confidence 444568888764 34556554443221 235777777773 454442 479999999999998888899999999999
Q ss_pred EccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceecccccccc
Q 001274 126 DLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLS 205 (1109)
Q Consensus 126 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 205 (1109)
||++|++++..|..|..+++|++|+|++|++++..+..|+++++|++|+|++|++++..+..|+++++|++|++++|.++
T Consensus 82 ~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 82 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence 99999999888888999999999999999999877788999999999999999999877788999999999999999997
Q ss_pred C-CCCccccccccchhhhcccccccccCchhhhcccccc----ceecccccccCCCCCCccccccccceeeeeccceec-
Q 001274 206 G-PIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLT----DLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGG- 279 (1109)
Q Consensus 206 ~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~- 279 (1109)
+ ..|..++.+++|++|+|++|++++..|..+..+.+++ .++++.|.++...+ .......++.+++.+|..+..
T Consensus 162 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~-~~~~~~~~~~l~l~~n~~~~~~ 240 (635)
T 4g8a_A 162 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEIRLHKLTLRNNFDSLNV 240 (635)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTCEEEEEEEESCCSSHHH
T ss_pred cCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCc-ccccchhhhhhhhhcccccccc
Confidence 5 4688899999999999999999999999998887765 57889999985444 444455788899999876543
Q ss_pred CchhhhccCccceEEeeccccc------CccCcccCCCCcCcEEEccCCcccC---CCcccccCCCCcceEecccccccC
Q 001274 280 LPKELGKLSRLKKLYVYTNELN------GTIPHELGNCTSAVEIDLSENQLTG---FIPRELGLIPNLCLLQLFENMLQG 350 (1109)
Q Consensus 280 ~p~~l~~l~~L~~L~l~~n~l~------~~~~~~l~~l~~L~~L~Ls~n~l~~---~~p~~l~~l~~L~~L~L~~n~l~~ 350 (1109)
.+..+..+..++...+..+... ......+..+..+...++..+.... ..+..+....+++.+.+.++.+..
T Consensus 241 ~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 320 (635)
T 4g8a_A 241 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER 320 (635)
T ss_dssp HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE
T ss_pred cchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc
Confidence 3456778888888777654432 2334456666677777766554432 234456677889999999998875
Q ss_pred cccccccCCCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccC--ccchhh
Q 001274 351 SIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDG--SIPPHL 428 (1109)
Q Consensus 351 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~--~~~~~l 428 (1109)
.. .+.....|+.|++++|.+.+..+ ..+..|+.+.+.+|.+... .....+++|++|++++|.+.. ..+..+
T Consensus 321 ~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 393 (635)
T 4g8a_A 321 VK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSD 393 (635)
T ss_dssp CG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHH
T ss_pred cc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccch
Confidence 43 35667789999999999985544 3467788999999987643 234578999999999998864 456677
Q ss_pred hcccccceeecCCccccCCCCCCCccccccceeecccccccccCC-ccccCCcccceeccccccccCCCCcccccccccc
Q 001274 429 CMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLP-IEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLE 507 (1109)
Q Consensus 429 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 507 (1109)
..+.+|++|++..|.+.. .+..+..+++|+.+++..|+.....+ ..|.++.+++.++++.|.+.+..+..+..+++|+
T Consensus 394 ~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~ 472 (635)
T 4g8a_A 394 FGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 472 (635)
T ss_dssp HSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred hhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhh
Confidence 888999999999999875 45678889999999999988876654 5688999999999999999999999999999999
Q ss_pred EEEccCCcc-CCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceeccccc
Q 001274 508 RLHLSENYF-VGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDN 586 (1109)
Q Consensus 508 ~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 586 (1109)
.|+|++|++ .+..|..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|
T Consensus 473 ~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred hhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC
Confidence 999999985 4467889999999999999999999999999999999999999999999888889999999999999999
Q ss_pred ccccccCcccCCC-cccceeeccCcccccc
Q 001274 587 KLTGAIPSSLGGL-ARLTELQMGGNIFSGS 615 (1109)
Q Consensus 587 ~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~ 615 (1109)
+|++..|..|..+ ++|+.|+|++|++...
T Consensus 553 ~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 553 HIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred cCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999999999998 6899999999999864
No 20
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=8.5e-50 Score=440.95 Aligned_cols=262 Identities=26% Similarity=0.404 Sum_probs=212.0
Q ss_pred cCCCCCceEecCCcceEEEEEec------CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCce
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA------NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSN 875 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 875 (1109)
++|.+.++||+|+||+||+|++. +++.||||+++.. .....++|.+|++++++++|||||+++|+|.+++..
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~ 90 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL 90 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC--ChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEE
Confidence 46778899999999999999863 4788999999743 334567899999999999999999999999999999
Q ss_pred EEEEEeccCCCHHHHhccCC----------CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCce
Q 001274 876 LLLYEYMENGSLGEQLHGNK----------QTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQA 945 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~ 945 (1109)
++|||||++|+|.++++..+ ....++|.++..|+.||++||+||| +++||||||||+|||++.++.+
T Consensus 91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~ 167 (299)
T 4asz_A 91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLV 167 (299)
T ss_dssp EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCE
T ss_pred EEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCCcE
Confidence 99999999999999997643 2235999999999999999999999 6799999999999999999999
Q ss_pred EEeeccccccccCCCCC-CccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHh
Q 001274 946 HVGDFGLAKLIDLPYSK-SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRS 1023 (1109)
Q Consensus 946 kl~DFG~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~ 1023 (1109)
||+|||+|+........ ......||+.|||||++.+..|+.++|||||||++|||+| |+.||.+... .+.+...
T Consensus 168 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~----~~~~~~i 243 (299)
T 4asz_A 168 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN----NEVIECI 243 (299)
T ss_dssp EECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH----HHHHHHH
T ss_pred EECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH----HHHHHHH
Confidence 99999999866432222 2234568999999999999999999999999999999999 8999986432 2222222
Q ss_pred hhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccC
Q 001274 1024 IHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVS 1085 (1109)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~ 1085 (1109)
..+..+.. +......+.+++.+||+.||++||||+||.+.|+.+....+
T Consensus 244 ~~~~~~~~-------------p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p 292 (299)
T 4asz_A 244 TQGRVLQR-------------PRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASP 292 (299)
T ss_dssp HHTCCCCC-------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred HcCCCCCC-------------CccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCC
Confidence 22221100 11122457899999999999999999999999988765543
No 21
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=3e-49 Score=442.78 Aligned_cols=260 Identities=26% Similarity=0.389 Sum_probs=205.7
Q ss_pred cCCCCCceEecCCcceEEEEEec------CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCce
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA------NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSN 875 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 875 (1109)
.+|.+.++||+|+||+||+|++. +++.||||+++.. .....++|.+|++++++++|||||+++|+|.+.+..
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~ 118 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--SESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPL 118 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence 35667789999999999999864 4789999999743 334567899999999999999999999999999999
Q ss_pred EEEEEeccCCCHHHHhccCCC------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCC
Q 001274 876 LLLYEYMENGSLGEQLHGNKQ------------TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEF 943 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~ 943 (1109)
++|||||++|+|.++++.... ...++|.++..|+.||++||+||| +++||||||||+|||++.++
T Consensus 119 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~ 195 (329)
T 4aoj_A 119 LMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGL 195 (329)
T ss_dssp EEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTT
T ss_pred EEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCCC
Confidence 999999999999999976532 134899999999999999999999 77999999999999999999
Q ss_pred ceEEeeccccccccCCCC-CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHH
Q 001274 944 QAHVGDFGLAKLIDLPYS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVR 1021 (1109)
Q Consensus 944 ~~kl~DFG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~ 1021 (1109)
.+||+|||+|+....... .......||+.|||||++.+..|+.++|||||||++|||+| |+.||.+... .+.+.
T Consensus 196 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~----~~~~~ 271 (329)
T 4aoj_A 196 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN----TEAID 271 (329)
T ss_dssp EEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH----HHHHH
T ss_pred cEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCH----HHHHH
Confidence 999999999987643222 22345679999999999999999999999999999999999 8999986432 22222
Q ss_pred HhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1022 RSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
....+..+.. +......+.+++.+||+.||++||||+||+++|+.+.+.
T Consensus 272 ~i~~g~~~~~-------------p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 272 CITQGRELER-------------PRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp HHHHTCCCCC-------------CTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred HHHcCCCCCC-------------cccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence 2222111100 111224578999999999999999999999999988764
No 22
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=2.1e-49 Score=439.82 Aligned_cols=256 Identities=21% Similarity=0.330 Sum_probs=208.4
Q ss_pred CCCCCceEecCCcceEEEEEec------CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceE
Q 001274 803 NFSEGAVIGRGACGTVYKATLA------NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 803 ~~~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 876 (1109)
++++.++||+|+||+||+|++. +++.||||+++... .....++|.+|+.++++++|||||+++|+|..++..+
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~-~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA-EGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-C-CC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECccc-ChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE
Confidence 4566789999999999999862 46889999997443 2344578999999999999999999999999999999
Q ss_pred EEEEeccCCCHHHHhccCCC-------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCC
Q 001274 877 LLYEYMENGSLGEQLHGNKQ-------------TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEF 943 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~ 943 (1109)
+|||||++|+|.+++..... ...++|.++.+|+.|||+||+||| +++||||||||+|||+++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG
T ss_pred EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCCC
Confidence 99999999999999965432 134899999999999999999999 77999999999999999999
Q ss_pred ceEEeeccccccccCCC-CCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHH
Q 001274 944 QAHVGDFGLAKLIDLPY-SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVR 1021 (1109)
Q Consensus 944 ~~kl~DFG~a~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~ 1021 (1109)
.+||+|||+|+...... ........||++|||||++.++.|+.++|||||||++|||+| |+.||.+.. ..+.+.
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~----~~~~~~ 258 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS----NQDVVE 258 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC----HHHHHH
T ss_pred CEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC----HHHHHH
Confidence 99999999998764322 223355689999999999999999999999999999999999 899998643 222222
Q ss_pred HhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1022 RSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
....+..+. .+..+...+.+++.+||+.||++||||+||+++|+.
T Consensus 259 ~i~~~~~~~-------------~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a 303 (308)
T 4gt4_A 259 MIRNRQVLP-------------CPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRA 303 (308)
T ss_dssp HHHTTCCCC-------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred HHHcCCCCC-------------CcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence 222221110 011223457899999999999999999999999964
No 23
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=6.8e-50 Score=447.25 Aligned_cols=256 Identities=23% Similarity=0.346 Sum_probs=209.1
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|++.++||+|+||+||+|++. +|+.||||++..........+.+.+|++++++++|||||++++++.+++..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 58999999999999999999965 69999999998665555566789999999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
||+||+|.+++...+.. .+++..++.++.||+.||+||| +++||||||||+|||++.++.+||+|||+|+.....
T Consensus 104 y~~gg~L~~~i~~~~~~-~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~- 178 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKGV-LFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST- 178 (350)
T ss_dssp CCTTCBHHHHHHHTTTC-CCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHH-
T ss_pred CCCCCcHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCC-
Confidence 99999999999765432 3789999999999999999999 779999999999999999999999999999876421
Q ss_pred CCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcch
Q 001274 961 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDL 1040 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1109)
.......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+. ...+.+........+.. .
T Consensus 179 ~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~----~~~~~~~~i~~~~~~~~---~----- 246 (350)
T 4b9d_A 179 VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG----SMKNLVLKIISGSFPPV---S----- 246 (350)
T ss_dssp HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS----SHHHHHHHHHHTCCCCC---C-----
T ss_pred cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc----CHHHHHHHHHcCCCCCC---C-----
Confidence 11224567999999999999999999999999999999999999999753 34444444444333211 0
Q ss_pred hhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1041 SAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1041 ~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
......+.+++.+||+.||++|||++|++++-+.
T Consensus 247 -----~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~ 280 (350)
T 4b9d_A 247 -----LHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFI 280 (350)
T ss_dssp -----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHH
T ss_pred -----ccCCHHHHHHHHHHccCChhHCcCHHHHhcCHHh
Confidence 0112357799999999999999999999987543
No 24
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=1.3e-48 Score=436.20 Aligned_cols=254 Identities=23% Similarity=0.380 Sum_probs=211.4
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
..|+..++||+|+||+||+|+++ +|+.||||++...... ..+.+.+|++++++++|||||++++++.+++..|+|||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~--~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmE 151 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ--RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME 151 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCS--SGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchh--HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence 46888899999999999999975 6999999999765433 34668899999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
||+||+|.+++.... +++.++..++.||+.||+||| +++||||||||+|||++.++.+||+|||+|+.....
T Consensus 152 y~~gg~L~~~l~~~~----l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~- 223 (346)
T 4fih_A 152 FLEGGALTDIVTHTR----MNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE- 223 (346)
T ss_dssp CCTTEEHHHHHHHSC----CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSS-
T ss_pred CCCCCcHHHHHHcCC----CCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCC-
Confidence 999999999997532 899999999999999999999 779999999999999999999999999999876532
Q ss_pred CCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcch
Q 001274 961 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDL 1040 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1109)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.. ..+.+........+..+..
T Consensus 224 ~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~----~~~~~~~i~~~~~~~~~~~------ 293 (346)
T 4fih_A 224 VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP----PLKAMKMIRDNLPPRLKNL------ 293 (346)
T ss_dssp SCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----HHHHHHHHHHSSCCCCSCG------
T ss_pred CCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC----HHHHHHHHHcCCCCCCCcc------
Confidence 233456789999999999999999999999999999999999999997532 2233332222221111110
Q ss_pred hhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1041 SAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1041 ~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
......+.+++.+||+.||++|||++|+++|-+..
T Consensus 294 -----~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~ 328 (346)
T 4fih_A 294 -----HKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLA 328 (346)
T ss_dssp -----GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGG
T ss_pred -----ccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhc
Confidence 11123577899999999999999999999986654
No 25
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=1.3e-48 Score=435.08 Aligned_cols=257 Identities=26% Similarity=0.292 Sum_probs=210.9
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
+.|+..++||+|+||+||+|+++ +|+.||||+++... ...+|+.++++++|||||++++++.+++..|+|||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-------~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmE 130 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-------FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFME 130 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-------CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHH-------hHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence 46778889999999999999975 69999999997432 22479999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCC-ceEEeeccccccccCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEF-QAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~-~~kl~DFG~a~~~~~~ 959 (1109)
||+||+|.++++..+. +++..+..++.||+.||+||| +++||||||||+|||++.+| .+||+|||+|+.....
T Consensus 131 y~~gg~L~~~l~~~~~---l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~ 204 (336)
T 4g3f_A 131 LLEGGSLGQLIKQMGC---LPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPD 204 (336)
T ss_dssp CCTTCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC---
T ss_pred ccCCCcHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCC
Confidence 9999999999986543 999999999999999999999 88999999999999999998 6999999999876532
Q ss_pred CCC----CccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhh
Q 001274 960 YSK----SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFD 1035 (1109)
Q Consensus 960 ~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1109)
... .....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+............ ...+..+.
T Consensus 205 ~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~----~~~~~~~~-- 278 (336)
T 4g3f_A 205 GLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIAS----EPPPIREI-- 278 (336)
T ss_dssp ---------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHH----SCCGGGGS--
T ss_pred CcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHc----CCCCchhc--
Confidence 211 12345799999999999999999999999999999999999999987654444333222 11111111
Q ss_pred hhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCC
Q 001274 1036 KRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSD 1086 (1109)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~ 1086 (1109)
.......+.+++.+||+.||++|||+.|+++++..+.+....
T Consensus 279 ---------~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~ 320 (336)
T 4g3f_A 279 ---------PPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGG 320 (336)
T ss_dssp ---------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTS
T ss_pred ---------CccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhhh
Confidence 111224577899999999999999999999999998876543
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-48 Score=473.36 Aligned_cols=456 Identities=21% Similarity=0.224 Sum_probs=321.0
Q ss_pred ceEEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccc
Q 001274 123 EILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHN 202 (1109)
Q Consensus 123 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 202 (1109)
++||+++|+++ .+|..+. ++|++|+|++|.+++..|..|+++++|++|+|++|++++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46777777777 4666554 67777777777777666667777777777777777777666677777777777777777
Q ss_pred cccCCCCccccccccchhhhcccccccc-cCchhhhccccccceecccccccCCCCCCccccccc--cceeeeeccceec
Q 001274 203 SLSGPIPPEISECEGLEVLGLAQNSLEG-FLPSELEKLRNLTDLILWQNHLSGEIPPTIGNIQSL--ELLALHENSFSGG 279 (1109)
Q Consensus 203 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L--~~L~L~~N~l~~~ 279 (1109)
+|+ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|+|++|++++ ..++.+++| ++|++++|.+.+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~- 152 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG- 152 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT-
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc-
Confidence 766 34443 55555555555555554 245555555555555555555543 233344444 445555544400
Q ss_pred CchhhhccCccceEEeecccccCccCcccCCCC-cCcEEEccCCcccCCCc-ccccCCCCcceEeccccc-------ccC
Q 001274 280 LPKELGKLSRLKKLYVYTNELNGTIPHELGNCT-SAVEIDLSENQLTGFIP-RELGLIPNLCLLQLFENM-------LQG 350 (1109)
Q Consensus 280 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~-------l~~ 350 (1109)
.+..|..+..+. +...+++++|++.+.++ ..+..+++|+.|++++|. +.+
T Consensus 153 ---------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 153 ---------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp ---------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred ---------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence 444444444433 23344555555554333 244455666666666655 555
Q ss_pred cccccccCCCCccEEEcccCcccCCCCcchh---cccccceEEcccccccccCCCcc-----cccCcCcEEEeccccccC
Q 001274 351 SIPRELGQLTQLHKLDLSINNLTGTIPLEFQ---NLTYLVDLQLFDNHLEGTIPPHI-----GVNSHLSVLDVSMNNLDG 422 (1109)
Q Consensus 351 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~~p~~~-----~~~~~L~~L~Ls~N~l~~ 422 (1109)
.+| .+..+++|+.|++++|.+++..+..+. ..++|+.|++++|+++|.+|..+ +.+++|+.+++++|.+
T Consensus 212 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-- 288 (520)
T 2z7x_B 212 ILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-- 288 (520)
T ss_dssp HHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred chh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence 555 677777888888888777653322221 23578888888888888888877 7888888888888888
Q ss_pred ccc-hhhhcc---cccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccC--CC
Q 001274 423 SIP-PHLCMY---QKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSG--LI 496 (1109)
Q Consensus 423 ~~~-~~l~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~ 496 (1109)
.+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++..|..|.++++|++|+|++|++++ .+
T Consensus 289 ~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 366 (520)
T 2z7x_B 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366 (520)
T ss_dssp CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH
T ss_pred ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc
Confidence 344 555555 67889999998886542 22678889999999999998888889999999999999999986 44
Q ss_pred CccccccccccEEEccCCccCCCCCh-hhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccc
Q 001274 497 PPEIGKLRNLERLHLSENYFVGYIPS-EVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQL 575 (1109)
Q Consensus 497 p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 575 (1109)
|..+..+++|++|++++|++++.+|. .+..+++|++|+|++|++++.+|..+. ++|+.|+|++|+|+ .+|..+..+
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l 443 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKL 443 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGC
T ss_pred hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcC
Confidence 56788899999999999999874554 488889999999999999888887765 78999999999998 788888899
Q ss_pred cccceecccccccccccCcccCCCcccceeeccCcccccccc
Q 001274 576 VNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIP 617 (1109)
Q Consensus 576 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 617 (1109)
++|+.|+|++|++++..+..|..+++|++|++++|++.+..+
T Consensus 444 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 444 EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999999999999995444458899999999999999887654
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-48 Score=486.21 Aligned_cols=377 Identities=19% Similarity=0.231 Sum_probs=252.2
Q ss_pred ccccccCchhhhccccccceecccccccC-----------------CCCCCcc--ccccccceeeeeccceecCchhhhc
Q 001274 226 NSLEGFLPSELEKLRNLTDLILWQNHLSG-----------------EIPPTIG--NIQSLELLALHENSFSGGLPKELGK 286 (1109)
Q Consensus 226 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-----------------~~p~~l~--~l~~L~~L~L~~N~l~~~~p~~l~~ 286 (1109)
|++++ +|..|+++++|++|+|++|++++ .+|..++ ++++|++|+|++|++.+.+|..|++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 55555 55555555555555555555554 2566655 6666666666666666666666666
Q ss_pred cCccceEEeeccc-ccC-ccCcccCCCC-------cCcEEEccCCcccCCCcc--cccCCCCcceEecccccccCccccc
Q 001274 287 LSRLKKLYVYTNE-LNG-TIPHELGNCT-------SAVEIDLSENQLTGFIPR--ELGLIPNLCLLQLFENMLQGSIPRE 355 (1109)
Q Consensus 287 l~~L~~L~l~~n~-l~~-~~~~~l~~l~-------~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~ 355 (1109)
+++|+.|++++|+ +++ .+|..+++++ +|++|+|++|+++ .+|. .++.+++|+.|+|++|.+. .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 6666666666665 555 5555444443 6666666666666 5555 5666666666666666666 555 5
Q ss_pred ccCCCCccEEEcccCcccCCCCcchhcccc-cceEEcccccccccCCCcccccCc--CcEEEeccccccCccchhh---h
Q 001274 356 LGQLTQLHKLDLSINNLTGTIPLEFQNLTY-LVDLQLFDNHLEGTIPPHIGVNSH--LSVLDVSMNNLDGSIPPHL---C 429 (1109)
Q Consensus 356 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~~~~--L~~L~Ls~N~l~~~~~~~l---~ 429 (1109)
|..+++|++|+|++|+++ .+|..+.++++ |+.|+|++|.++ .+|..+..++. |+.|+|++|++.+.+|... .
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 666666666666666666 56666666666 666666666666 55555555433 6666666666665544322 1
Q ss_pred --cccccceeecCCccccCCCCCCCccccccceeecccccccccCCcccc-------CCcccceeccccccccCCCCccc
Q 001274 430 --MYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFY-------NLQNLSALELYQNRFSGLIPPEI 500 (1109)
Q Consensus 430 --~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~ 500 (1109)
.+.+|+.|+|++|+++...+..+..+++|+.|+|++|+++.+.+..|. ++++|++|+|++|+|+ .+|..+
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l 747 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDF 747 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGG
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHh
Confidence 223566666666666633222234566666666666666633333333 2237777777777777 456666
Q ss_pred c--ccccccEEEccCCccCCCCChhhcccccccEEeccc------CcccccCCcCCCCCCCCCeeecCCCcCccCCCccc
Q 001274 501 G--KLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISS------NSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEEL 572 (1109)
Q Consensus 501 ~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 572 (1109)
. .+++|+.|+|++|+|++ +|..+.++++|+.|+|++ |++.+.+|..|.++++|+.|+|++|+| +.+|..+
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp STTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred hhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh
Confidence 5 77777777777777776 577777777777777765 889999999999999999999999999 5888887
Q ss_pred ccccccceecccccccccccCcccCCCcccceeeccCcccc
Q 001274 573 GQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFS 613 (1109)
Q Consensus 573 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 613 (1109)
. ++|+.|+|++|++....+..+.....+..+.|.+|++.
T Consensus 826 ~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 826 T--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp C--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred c--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 6 69999999999999888888877777888888888765
No 28
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=1.4e-48 Score=427.76 Aligned_cols=250 Identities=27% Similarity=0.385 Sum_probs=202.6
Q ss_pred CCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEe----CCceEEEE
Q 001274 805 SEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYH----QDSNLLLY 879 (1109)
Q Consensus 805 ~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ 879 (1109)
+..++||+|+||+||+|++. +++.||||++..........+.|.+|++++++++|||||++++++.. ++..|+||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 55678999999999999875 68999999998665555566789999999999999999999999875 24578999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCC--eEecCCCCCceeeCC-CCceEEeeccccccc
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPH--IIHRDIKSNNILLDE-EFQAHVGDFGLAKLI 956 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIll~~-~~~~kl~DFG~a~~~ 956 (1109)
|||++|+|.+++.+... +++..+..++.||+.||+||| +++ ||||||||+|||++. ++.+||+|||+|+..
T Consensus 109 Ey~~gg~L~~~l~~~~~---l~~~~~~~~~~qi~~aL~ylH---~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~ 182 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFKV---MKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK 182 (290)
T ss_dssp ECCCSCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---TSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred eCCCCCCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCCCEEecccChhheeEECCCCCEEEEeCcCCEeC
Confidence 99999999999986543 899999999999999999999 556 999999999999974 799999999999864
Q ss_pred cCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK 1036 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1109)
. .......+||+.|||||++.+ +|+.++||||+||++|||+||+.||.+.. ......+.......+ . .+++
T Consensus 183 ~---~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~---~~~~~~~~i~~~~~~-~-~~~~ 253 (290)
T 3fpq_A 183 R---ASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQ---NAAQIYRRVTSGVKP-A-SFDK 253 (290)
T ss_dssp C---TTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCS---SHHHHHHHHTTTCCC-G-GGGG
T ss_pred C---CCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCC---cHHHHHHHHHcCCCC-C-CCCc
Confidence 3 223456789999999998865 69999999999999999999999997532 222333322222211 1 1111
Q ss_pred hcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1037 RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
. ....+.+++.+||+.||++|||++|+++|-+.
T Consensus 254 ~----------~~~~~~~li~~~L~~dP~~R~s~~e~l~Hp~~ 286 (290)
T 3fpq_A 254 V----------AIPEVKEIIEGCIRQNKDERYSIKDLLNHAFF 286 (290)
T ss_dssp C----------CCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGG
T ss_pred c----------CCHHHHHHHHHHccCChhHCcCHHHHhcCccc
Confidence 1 11246789999999999999999999987543
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.9e-48 Score=467.70 Aligned_cols=450 Identities=18% Similarity=0.197 Sum_probs=237.3
Q ss_pred EEeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCceEEccCCcccccCCchhhccccceEEEccccc
Q 001274 76 SVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENY 155 (1109)
Q Consensus 76 ~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 155 (1109)
.+|+++++|+ .+|..+. ++|++|+|++|.+++..|..++++++|++|+|++|++++..|..+..+++|++|+|++|.
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 4666666666 3454444 666666666666666555666666666666666666666556666666666666666666
Q ss_pred ccccccccccCcCCCceEEeecCCCCC-CCCcccccccccceeccccccccCCCCccccccccc--hhhhcccccc--cc
Q 001274 156 IFGEIPEEIGNLTSLEELVIYSNNLTG-AIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGL--EVLGLAQNSL--EG 230 (1109)
Q Consensus 156 l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~ 230 (1109)
++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 65 45544 56666666666666665 355666666666666666666654 234455555 6666666665 55
Q ss_pred cCchhhhccc-cccceecccccccCCCC-CCccccccccceeeeecc-------ceecCchhhhccCccceEEeeccccc
Q 001274 231 FLPSELEKLR-NLTDLILWQNHLSGEIP-PTIGNIQSLELLALHENS-------FSGGLPKELGKLSRLKKLYVYTNELN 301 (1109)
Q Consensus 231 ~~p~~l~~l~-~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~-------l~~~~p~~l~~l~~L~~L~l~~n~l~ 301 (1109)
..|..+..+. +...+++++|++.+.++ ..+.++++|+.|++++|. +.+.+| .++.+++|+.|++++|.++
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence 5555555444 23344555555554433 234555555555555554 444443 4555555555555555444
Q ss_pred CccCcccC---CCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccc-----cCCCCccEEEcccCccc
Q 001274 302 GTIPHELG---NCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPREL-----GQLTQLHKLDLSINNLT 373 (1109)
Q Consensus 302 ~~~~~~l~---~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~ 373 (1109)
+..+..+. .+++|++|++++|++++ .+|..+ ..+++|+.+++++|.+
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------------~~p~~~~~~~~~~l~~L~~l~l~~n~~- 288 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQG------------------------QLDFRDFDYSGTSLKALSIHQVVSDVF- 288 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEES------------------------CCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccC------------------------ccccchhhcccccCceeEeccccccce-
Confidence 32111100 01233333333333333 333333 3444444444444444
Q ss_pred CCCC-cchhcc---cccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCC
Q 001274 374 GTIP-LEFQNL---TYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIP 449 (1109)
Q Consensus 374 ~~~p-~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 449 (1109)
.+| ..+..+ .+|+.|++++|.+ .... .+..+++|++|++++|++++.+|
T Consensus 289 -~~p~~~~~~~~~~~~L~~L~l~~n~l------------------------~~~~--~~~~l~~L~~L~Ls~n~l~~~~~ 341 (520)
T 2z7x_B 289 -GFPQSYIYEIFSNMNIKNFTVSGTRM------------------------VHML--CPSKISPFLHLDFSNNLLTDTVF 341 (520)
T ss_dssp -CSCTHHHHHHHHTCCCSEEEEESSCC------------------------CCCC--CCSSCCCCCEEECCSSCCCTTTT
T ss_pred -ecchhhhhcccccCceeEEEcCCCcc------------------------cccc--chhhCCcccEEEeECCccChhhh
Confidence 222 222222 2334444444333 2211 01234444444444444444444
Q ss_pred CCCccccccceeecccccccc--cCCccccCCcccceeccccccccCCCCc-cccccccccEEEccCCccCCCCChhhcc
Q 001274 450 PGLKTCRSLMQLMLGQNQLTG--SLPIEFYNLQNLSALELYQNRFSGLIPP-EIGKLRNLERLHLSENYFVGYIPSEVGN 526 (1109)
Q Consensus 450 ~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 526 (1109)
..+..+++|++|++++|++++ .+|..|.++++|++|+|++|++++.+|. .+..+++|++|++++|++++..|..+.
T Consensus 342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~- 420 (520)
T 2z7x_B 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP- 420 (520)
T ss_dssp TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-
T ss_pred hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-
Confidence 445555555555555555554 2334555566666666666666552332 355566666666666666555444433
Q ss_pred cccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcc-cccccccceecccccccccc
Q 001274 527 LEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEE-LGQLVNLELLKLSDNKLTGA 591 (1109)
Q Consensus 527 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ 591 (1109)
++|++|+|++|+|+ .+|..+..+++|++|+|++|+|++ +|.. |..+++|+.|++++|++++.
T Consensus 421 -~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 421 -PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp -TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 45666666666666 555555566666666666666663 4433 66666666666666666543
No 30
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=1e-48 Score=441.85 Aligned_cols=273 Identities=25% Similarity=0.387 Sum_probs=219.6
Q ss_pred CCHHHHHHHhcCCCCCceEecCCcceEEEEEecC------CcEEEEEEeeccCCCcchhHHHHHHHHHhccCCC-Cceee
Q 001274 792 FKYHNLLEATGNFSEGAVIGRGACGTVYKATLAN------GEVIAVKKIKLRGEGATADNSFLAEISTLGKIRH-RNIVK 864 (1109)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~ 864 (1109)
+...+++...++|++.++||+|+||+||+|++.. ++.||||+++.. ......+.|.+|++++++++| ||||+
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~-~~~~~~~~~~~E~~il~~l~hhpnIV~ 132 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG-ATHSEHRALMSELKILIHIGHHLNVVN 132 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccc-cChHHHHHHHHHHHHHHHcCCCCcEEE
Confidence 3334444456789999999999999999998642 367999999743 233445789999999999965 89999
Q ss_pred EEEEEEeC-CceEEEEEeccCCCHHHHhccCCC-------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEec
Q 001274 865 LYGFCYHQ-DSNLLLYEYMENGSLGEQLHGNKQ-------------TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHR 930 (1109)
Q Consensus 865 l~~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~ 930 (1109)
++|+|... +..++|||||++|+|.++++.... ...+++.++..++.|||+||+||| +++||||
T Consensus 133 l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHR 209 (353)
T 4ase_A 133 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHR 209 (353)
T ss_dssp EEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCS
T ss_pred EEEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecC
Confidence 99999765 567999999999999999975432 234899999999999999999999 7799999
Q ss_pred CCCCCceeeCCCCceEEeeccccccccCCCC-CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCC
Q 001274 931 DIKSNNILLDEEFQAHVGDFGLAKLIDLPYS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQ 1008 (1109)
Q Consensus 931 Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~ 1008 (1109)
||||+|||+++++.+||+|||+|+....... .......||+.|||||++.+..|+.++|||||||++|||+| |+.||.
T Consensus 210 DLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~ 289 (353)
T 4ase_A 210 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 289 (353)
T ss_dssp CCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred ccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999987643322 22345679999999999999999999999999999999998 999998
Q ss_pred CcccCCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1009 SLELGGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
+......+...+....+...| ......+.+++.+||+.||++||||+||+++|..+.+..
T Consensus 290 ~~~~~~~~~~~i~~g~~~~~p----------------~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 290 GVKIDEEFCRRLKEGTRMRAP----------------DYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp TCCCSHHHHHHHHHTCCCCCC----------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCCCCCC----------------ccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHh
Confidence 765444444444332221111 011235778999999999999999999999999987654
No 31
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=9.5e-48 Score=417.22 Aligned_cols=252 Identities=24% Similarity=0.356 Sum_probs=196.8
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCC-cchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEG-ATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.+.||+|+||+||+|++. +|+.||||++...... ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 68999999999999999999965 6999999999754322 233567999999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+ +|+|.+++...+. +++.++..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+|+....
T Consensus 93 Ey~-~g~L~~~l~~~~~---l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~- 164 (275)
T 3hyh_A 93 EYA-GNELFDYIVQRDK---MSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD- 164 (275)
T ss_dssp ECC-CEEHHHHHHHSCS---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC------
T ss_pred eCC-CCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecCC-
Confidence 999 6899999987654 999999999999999999999 77999999999999999999999999999986542
Q ss_pred CCCCccccccccceeccccccCCCC-CccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
.......+||+.|+|||++.+..| +.++||||+||++|||+||+.||.+. ......+.......+....
T Consensus 165 -~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~----~~~~~~~~i~~~~~~~p~~----- 234 (275)
T 3hyh_A 165 -GNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE----SIPVLFKNISNGVYTLPKF----- 234 (275)
T ss_dssp -----------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS----SHHHHHHHHHHTCCCCCTT-----
T ss_pred -CCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCC----CHHHHHHHHHcCCCCCCCC-----
Confidence 233456789999999999998886 57999999999999999999999753 3333333333332221111
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
....+.+++.+|++.||++|||++|++++-+..
T Consensus 235 ---------~s~~~~~li~~~L~~dP~~R~s~~eil~hpw~k 267 (275)
T 3hyh_A 235 ---------LSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFK 267 (275)
T ss_dssp ---------SCHHHHHHHHHHSCSSGGGSCCHHHHHHCHHHH
T ss_pred ---------CCHHHHHHHHHHccCChhHCcCHHHHHcCcccc
Confidence 113467899999999999999999999987653
No 32
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=2.1e-48 Score=427.87 Aligned_cols=251 Identities=22% Similarity=0.286 Sum_probs=209.6
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.++||+|+||+||+|++. +++.||||++..... .....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 46899999999999999999965 799999999974321 1224567899999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
|||+||+|.+++.+.+. +++.++..++.||+.||+||| +++||||||||+|||++.++.+||+|||+|+.....
T Consensus 112 Ey~~gG~L~~~i~~~~~---l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIGS---FDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ecCCCCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCC
Confidence 99999999999987553 999999999999999999999 779999999999999999999999999999976532
Q ss_pred C-CCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 960 Y-SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 960 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
. .......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+. +..+.............+.
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~----~~~~~~~~i~~~~~~~p~~----- 256 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG----NEGLIFAKIIKLEYDFPEK----- 256 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS----SHHHHHHHHHHTCCCCCTT-----
T ss_pred CCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC----CHHHHHHHHHcCCCCCCcc-----
Confidence 2 23345678999999999999999999999999999999999999999753 3333333333333221111
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAM 1076 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~ 1076 (1109)
....+.+++.+|++.||++|||++|+..+
T Consensus 257 ---------~s~~~~dli~~lL~~dp~~R~t~~e~~~~ 285 (311)
T 4aw0_A 257 ---------FFPKARDLVEKLLVLDATKRLGCEEMEGY 285 (311)
T ss_dssp ---------CCHHHHHHHHHHSCSSGGGSTTSGGGTCH
T ss_pred ---------cCHHHHHHHHHHccCCHhHCcChHHHcCC
Confidence 11346789999999999999999986443
No 33
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=1.6e-47 Score=437.97 Aligned_cols=254 Identities=23% Similarity=0.382 Sum_probs=211.9
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
+.|+..++||+|+||+||+|++. +|+.||||++..... ...+.+.+|+++|++++|||||++++++.+++..|+|||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~--~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmE 228 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ--QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME 228 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTC--SSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccch--hHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEe
Confidence 56889999999999999999975 699999999975543 345678999999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
||+||+|.+++.... +++.++..++.||+.||+||| +++||||||||+|||++.+|.+||+|||+|+.....
T Consensus 229 y~~gG~L~~~i~~~~----l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~- 300 (423)
T 4fie_A 229 FLEGGALTDIVTHTR----MNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE- 300 (423)
T ss_dssp CCTTEEHHHHHHHSC----CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSS-
T ss_pred CCCCCcHHHHHhccC----CCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCCC-
Confidence 999999999997543 899999999999999999999 779999999999999999999999999999876532
Q ss_pred CCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcch
Q 001274 961 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDL 1040 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1109)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.. ..+.+........+.....
T Consensus 301 ~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~----~~~~~~~i~~~~~~~~~~~------ 370 (423)
T 4fie_A 301 VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP----PLKAMKMIRDNLPPRLKNL------ 370 (423)
T ss_dssp CCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----HHHHHHHHHHSCCCCCSCT------
T ss_pred CccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC----HHHHHHHHHcCCCCCCccc------
Confidence 233456789999999999999999999999999999999999999997532 2233332222221111100
Q ss_pred hhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1041 SAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1041 ~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
......+.+|+.+||+.||++|||++|+++|-+..
T Consensus 371 -----~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp~~~ 405 (423)
T 4fie_A 371 -----HKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLA 405 (423)
T ss_dssp -----TSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGG
T ss_pred -----ccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHHhc
Confidence 01123577999999999999999999999986554
No 34
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=5.1e-48 Score=425.19 Aligned_cols=252 Identities=25% Similarity=0.279 Sum_probs=202.9
Q ss_pred cCCCCCceEecCCcceEEEEEec----CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA----NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLL 877 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 877 (1109)
++|++.+.||+|+||+||+|+.. .++.||||+++...........+.+|++++++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 46899999999999999999852 47899999997543333344578899999999999999999999999999999
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
|||||+||+|.+++.+.+. +++.++..++.||+.||+||| +++||||||||+|||++.++.+||+|||+|+...
T Consensus 104 vmEy~~gg~L~~~l~~~~~---l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~ 177 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEVM---FTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESI 177 (304)
T ss_dssp EECCCTTCEEHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC--
T ss_pred EEEcCCCCCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEecccccceecc
Confidence 9999999999999987553 999999999999999999999 7799999999999999999999999999998654
Q ss_pred CCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhh
Q 001274 958 LPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKR 1037 (1109)
Q Consensus 958 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1109)
. ........+||+.|||||++.+..|+.++||||+||++|||+||+.||.+. +..+..........+..+.
T Consensus 178 ~-~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~----~~~~~~~~i~~~~~~~p~~---- 248 (304)
T 3ubd_A 178 D-HEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK----DRKETMTMILKAKLGMPQF---- 248 (304)
T ss_dssp ----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS----SHHHHHHHHHHCCCCCCTT----
T ss_pred C-CCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc----CHHHHHHHHHcCCCCCCCc----
Confidence 2 223345678999999999999999999999999999999999999999753 3333344333333222111
Q ss_pred cchhhcccHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHHHH
Q 001274 1038 LDLSAKRTVEEMTLFLKIALFCSSTSPLNRPT-----MREVIAMMI 1078 (1109)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt-----~~evl~~L~ 1078 (1109)
....+.+++.+||+.||++||| ++|+++|-+
T Consensus 249 ----------~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~ 284 (304)
T 3ubd_A 249 ----------LSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSF 284 (304)
T ss_dssp ----------SCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGG
T ss_pred ----------CCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcCcc
Confidence 1134678999999999999998 468887654
No 35
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=2.8e-47 Score=424.20 Aligned_cols=268 Identities=25% Similarity=0.313 Sum_probs=202.1
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC----ceEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD----SNLL 877 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~l 877 (1109)
++|.+.++||+|+||+||+|++ +|+.||||+++.. ......+.+|+..+.+++|||||+++|+|.+++ ..++
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~---~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~l 78 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL 78 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc---chhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEE
Confidence 4577788999999999999998 4899999999633 122233445666677889999999999998764 4689
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcC-----CCCeEecCCCCCceeeCCCCceEEeeccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDC-----RPHIIHRDIKSNNILLDEEFQAHVGDFGL 952 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dlkp~NIll~~~~~~kl~DFG~ 952 (1109)
|||||++|+|.++++... ++|..+.+++.|++.||+|||+++ .++||||||||+|||++.++.+||+|||+
T Consensus 79 V~Ey~~~gsL~~~l~~~~----l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGl 154 (303)
T 3hmm_A 79 VSDYHEHGSLFDYLNRYT----VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL 154 (303)
T ss_dssp EEECCTTCBHHHHHHHCC----BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred EecCCCCCcHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCC
Confidence 999999999999998653 899999999999999999999542 34899999999999999999999999999
Q ss_pred cccccCCCCC---CccccccccceeccccccCC------CCCccchhHHHHHHHHHHHhCCCCCCCccc----------C
Q 001274 953 AKLIDLPYSK---SMSAIAGSYGYIAPEYAYTM------KVTEKCDIYSFGVVLLELITGKSPVQSLEL----------G 1013 (1109)
Q Consensus 953 a~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlGvll~elltg~~pf~~~~~----------~ 1013 (1109)
|+........ .....+||+.|||||++.+. .++.++|||||||++|||+||+.||..... .
T Consensus 155 a~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~ 234 (303)
T 3hmm_A 155 AVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPS 234 (303)
T ss_dssp CEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCS
T ss_pred CccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccc
Confidence 9876532221 22345799999999998764 467899999999999999999877643221 1
Q ss_pred C-cHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1014 G-DLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1014 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
. .............. ++.+.. .....+....+.+++.+||+.||++||||+||+++|+++.+..
T Consensus 235 ~~~~~~~~~~~~~~~~------rp~~p~-~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~ 299 (303)
T 3hmm_A 235 DPSVEEMRKVVCEQKL------RPNIPN-RWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp SCCHHHHHHHHTTSCC------CCCCCG-GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHhcccC------CCCCCc-cccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHHc
Confidence 1 12222222211111 001100 1113345667889999999999999999999999999887653
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.4e-46 Score=465.55 Aligned_cols=532 Identities=19% Similarity=0.161 Sum_probs=356.9
Q ss_pred cCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccccccCC
Q 001274 128 CTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGP 207 (1109)
Q Consensus 128 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 207 (1109)
++-.++ .+|..+ .+++++|||++|.|++..|.+|+++++|++|+|++|+|++..|.+|++|++|++|+|++|+|++.
T Consensus 39 ~~~~l~-~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 39 MELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTSCCS-SCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcC-ccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 333454 566544 24678888888888766667788888888888888888766666777777788888877777765
Q ss_pred CCccccccccchhhhcccccccccCchhhhccccccceecccccccC-CCCCCccccccccceeeeeccceecCchhhhc
Q 001274 208 IPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLSG-EIPPTIGNIQSLELLALHENSFSGGLPKELGK 286 (1109)
Q Consensus 208 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 286 (1109)
.+..|+++++|++|+|++|++++..+..|+++++|++|+|++|++++ .+|..++.+++|++|+|++|++++..|..+..
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence 55667777777777777777776666667777777777777777764 34566666777777777777777666666665
Q ss_pred cCccc----eEEeecccccCccCcccCCCCcCcEEEccCCcccCC-CcccccCCCCcceEecccccccCcccccccCCCC
Q 001274 287 LSRLK----KLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGF-IPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQ 361 (1109)
Q Consensus 287 l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 361 (1109)
+.+++ .++++.|.++...+. ......+..+++++|..... .+..+..++.++...+..+....
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~----------- 263 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN----------- 263 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT-----------
T ss_pred hhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCccccccccccccccc-----------
Confidence 55443 455556665533332 22333445555555544321 12223333333333332221110
Q ss_pred ccEEEcccCcccCCCCcchhcccccceEEccccccc---ccCCCcccccCcCcEEEeccccccCccchhhhcccccceee
Q 001274 362 LHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLE---GTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLS 438 (1109)
Q Consensus 362 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 438 (1109)
...+.......+..+..+..+.+..+... ...+..+....+++.+++.+|.+.... .+.....|+.|+
T Consensus 264 -------~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~ 334 (635)
T 4g8a_A 264 -------EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLE 334 (635)
T ss_dssp -------SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEE
T ss_pred -------ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhh
Confidence 01112222333444444444444433322 123344555666777777777665432 344556677777
Q ss_pred cCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccC--CCCccccccccccEEEccCCcc
Q 001274 439 LGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSG--LIPPEIGKLRNLERLHLSENYF 516 (1109)
Q Consensus 439 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l 516 (1109)
+.+|.+.+..+. .+..|+.+++..|.+... ..+.++++|+.|++++|.+.. ..+..+..+.+|+.|+++.|.+
T Consensus 335 l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~ 409 (635)
T 4g8a_A 335 LVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV 409 (635)
T ss_dssp EESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSE
T ss_pred cccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccc
Confidence 777777654433 345666777777776543 234567778888888877743 3455566677788888888877
Q ss_pred CCCCChhhcccccccEEecccCcccccCC-cCCCCCCCCCeeecCCCcCccCCCcccccccccceeccccccc-ccccCc
Q 001274 517 VGYIPSEVGNLEHLVTFNISSNSLSGTIP-HELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKL-TGAIPS 594 (1109)
Q Consensus 517 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~ 594 (1109)
.. .+..+..+++|+.+++++|+.....+ ..+..+++++.+++++|.+++..+..+..+++|+.|+|++|++ .+..|.
T Consensus 410 ~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~ 488 (635)
T 4g8a_A 410 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 488 (635)
T ss_dssp EE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCch
Confidence 64 45567777888888888777665443 4567788888888888888877777888888888888888874 445777
Q ss_pred ccCCCcccceeeccCccccccccccccccchhhhhhccCCccccccccccccCccccceeecCCCccccCCchhhhcc-c
Q 001274 595 SLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIPASMGEQ-M 673 (1109)
Q Consensus 595 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l-~ 673 (1109)
.|..+++|++|+|++|++++.+|..|.+++.|+ .|+|++|+|++..|..|+++++|++|||++|+|++.+|..+..+ .
T Consensus 489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~-~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 567 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ-VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 567 (635)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC-EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCT
T ss_pred hhhhccccCEEECCCCccCCcChHHHcCCCCCC-EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhC
Confidence 888888888888888888888888888888886 48888999998888899999999999999999999999999988 6
Q ss_pred cceEEEccCcccccccC
Q 001274 674 SLLVCNLSNNNLVGTVP 690 (1109)
Q Consensus 674 ~L~~l~ls~N~l~g~~p 690 (1109)
+|++|+|++|+++|...
T Consensus 568 ~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 568 SLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TCCEEECTTCCBCCSGG
T ss_pred cCCEEEeeCCCCcccCC
Confidence 89999999999998775
No 37
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=3.7e-46 Score=412.71 Aligned_cols=254 Identities=24% Similarity=0.370 Sum_probs=192.7
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC-------
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD------- 873 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------- 873 (1109)
++|++.+.||+|+||+||+|+++ +|+.||||+++... .....+.+.+|++++++++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~-~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~ 83 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN-RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP 83 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS-SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence 35888999999999999999975 79999999997543 2334567899999999999999999999987654
Q ss_pred -----ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEe
Q 001274 874 -----SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVG 948 (1109)
Q Consensus 874 -----~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~ 948 (1109)
..|+|||||++|+|.+++.........++..++.++.||++||+||| +++||||||||+|||++.++.+||+
T Consensus 84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~vKl~ 160 (299)
T 4g31_A 84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVG 160 (299)
T ss_dssp ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEEC
T ss_pred cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcEEEc
Confidence 35899999999999999987665444667778899999999999999 7799999999999999999999999
Q ss_pred eccccccccCCCCC-----------CccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHH
Q 001274 949 DFGLAKLIDLPYSK-----------SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLV 1017 (1109)
Q Consensus 949 DFG~a~~~~~~~~~-----------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~ 1017 (1109)
|||+|+........ .....+||+.|||||++.+..|+.++||||+||++|||++ ||.+.. +..
T Consensus 161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~---~~~ 234 (299)
T 4g31_A 161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM---ERV 234 (299)
T ss_dssp CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH---HHH
T ss_pred cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc---HHH
Confidence 99999876532211 1234579999999999999999999999999999999996 775321 111
Q ss_pred HHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1018 TWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
..+........ .+. .........+++.+||+.||++|||+.|++++-+
T Consensus 235 ~~~~~~~~~~~--p~~-----------~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~ 282 (299)
T 4g31_A 235 RTLTDVRNLKF--PPL-----------FTQKYPCEYVMVQDMLSPSPMERPEAINIIENAV 282 (299)
T ss_dssp HHHHHHHTTCC--CHH-----------HHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTSGG
T ss_pred HHHHHHhcCCC--CCC-----------CcccCHHHHHHHHHHcCCChhHCcCHHHHhcCHh
Confidence 11111111111 111 1112234567999999999999999999998643
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.8e-45 Score=448.01 Aligned_cols=459 Identities=20% Similarity=0.171 Sum_probs=277.3
Q ss_pred ceeecccCccCCCCCccccCCCCCceEEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecC
Q 001274 99 VEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSN 178 (1109)
Q Consensus 99 ~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 178 (1109)
+++++++|++++ +|..+. ++|++|+|++|.+++..|..+..+++|++|+|++|.+++..|+.|+++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 556666666663 554443 55555555555555544445555555555555555555444555555555555555555
Q ss_pred CCCCCCCcccccccccceeccccccccCCCCccccccccchhhhcccccccccCchhhhccccccceecccccccCCCCC
Q 001274 179 NLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLSGEIPP 258 (1109)
Q Consensus 179 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 258 (1109)
+++ .+|.. .+++|++|++++|++++. .+|..|+++++|++|+|++|++++ .
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l-----------------------~~p~~~~~l~~L~~L~L~~n~l~~---~ 161 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVL-----------------------PVCKEFGNLTKLTFLGLSAAKFRQ---L 161 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBC-----------------------CCCGGGGGCTTCCEEEEECSBCCT---T
T ss_pred cCC-ccCcc--ccccCCEEECCCCCcccc-----------------------CchHhhcccCcccEEecCCCcccc---C
Confidence 554 34433 444444444444444431 223455555555555555555543 1
Q ss_pred Cccccccc--cceeeeeccc--eecCchhhhccC-ccceEEeecccccCccCc-ccCCCCcCcEEEccCCcccCCCcccc
Q 001274 259 TIGNIQSL--ELLALHENSF--SGGLPKELGKLS-RLKKLYVYTNELNGTIPH-ELGNCTSAVEIDLSENQLTGFIPREL 332 (1109)
Q Consensus 259 ~l~~l~~L--~~L~L~~N~l--~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~l 332 (1109)
.+..+++| ++|++++|.+ ++..|..+..+. ..-.++++.|.+.+.++. .+.++++|+.|++++|+..-.
T Consensus 162 ~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----- 236 (562)
T 3a79_B 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ----- 236 (562)
T ss_dssp TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-----
T ss_pred chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc-----
Confidence 23333333 5555555555 445555444433 111334455555443332 344455555555555531100
Q ss_pred cCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCC----CcchhcccccceEEcccccccccCCCcc----
Q 001274 333 GLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTI----PLEFQNLTYLVDLQLFDNHLEGTIPPHI---- 404 (1109)
Q Consensus 333 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~p~~~---- 404 (1109)
.+. .....+..+++|+.|+++++.+++.. +.. ...++|++|++++|.++|.+|..+
T Consensus 237 --------------~l~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~ 300 (562)
T 3a79_B 237 --------------RLM-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYS 300 (562)
T ss_dssp --------------HHH-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCC
T ss_pred --------------hHH-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcc
Confidence 000 01122344445555555544443211 111 112366666666666666666655
Q ss_pred -cccCcCcEEEeccccccCccc-hhhhcc---cccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCC
Q 001274 405 -GVNSHLSVLDVSMNNLDGSIP-PHLCMY---QKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNL 479 (1109)
Q Consensus 405 -~~~~~L~~L~Ls~N~l~~~~~-~~l~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 479 (1109)
..+..|+.++++.|.+ .+| ..+..+ .+|+.|++++|.+.... ....+++|++|++++|++++..|..|.++
T Consensus 301 ~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 376 (562)
T 3a79_B 301 ETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376 (562)
T ss_dssp SCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSC
T ss_pred cccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhccc
Confidence 5556666666666665 233 333322 56788888888775332 12577888888888888888888888888
Q ss_pred cccceeccccccccCCC--CccccccccccEEEccCCccCCCCC-hhhcccccccEEecccCcccccCCcCCCCCCCCCe
Q 001274 480 QNLSALELYQNRFSGLI--PPEIGKLRNLERLHLSENYFVGYIP-SEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQR 556 (1109)
Q Consensus 480 ~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 556 (1109)
++|++|+|++|+++++. |..|..+++|++|++++|++++.+| ..+..+++|++|+|++|++++.+|..+. ++|++
T Consensus 377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~ 454 (562)
T 3a79_B 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV 454 (562)
T ss_dssp SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSE
T ss_pred CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCE
Confidence 88888888888888643 4568888889999999998887444 4578888999999999999877777665 68999
Q ss_pred eecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCcccccccc
Q 001274 557 LDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIP 617 (1109)
Q Consensus 557 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 617 (1109)
|+|++|+|+ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..|
T Consensus 455 L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp EECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred EECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 999999998 677777789999999999999985444448889999999999999887655
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.6e-45 Score=447.03 Aligned_cols=460 Identities=18% Similarity=0.224 Sum_probs=323.5
Q ss_pred EEEEeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCceEEccCCcccccCCchhhccccceEEEccc
Q 001274 74 VTSVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCE 153 (1109)
Q Consensus 74 v~~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 153 (1109)
...+|++++++++ +|..+. ++|+.|+|++|.+++..|..++++++|++|+|++|++++..|..+..+++|++|+|++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3779999999996 666554 8999999999999998889999999999999999999998899999999999999999
Q ss_pred ccccccccccccCcCCCceEEeecCCCCC-CCCcccccccccceeccccccccCCCCccccccccc--hhhhcccccc--
Q 001274 154 NYIFGEIPEEIGNLTSLEELVIYSNNLTG-AIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGL--EVLGLAQNSL-- 228 (1109)
Q Consensus 154 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L--~~L~L~~n~l-- 228 (1109)
|.++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 9998 67777 89999999999999996 4578999999999999999999853 35555555 8888888888
Q ss_pred cccCchhhhccc-cccceecccccccCCCCC-Cccccccccceeeeecc-----ceecCchhhhccCccceEEeeccccc
Q 001274 229 EGFLPSELEKLR-NLTDLILWQNHLSGEIPP-TIGNIQSLELLALHENS-----FSGGLPKELGKLSRLKKLYVYTNELN 301 (1109)
Q Consensus 229 ~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~-----l~~~~p~~l~~l~~L~~L~l~~n~l~ 301 (1109)
++..|..+..+. ...++++++|.+.+.++. .+..+++|+.|++++|+ +.+ .+..+..+++|+.|++.++.++
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEEC
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCc
Confidence 777787777654 122557778877765543 45667788888888774 222 2234566666666666655544
Q ss_pred CccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccc-----cCCCCccEEEcccCcccCCC
Q 001274 302 GTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPREL-----GQLTQLHKLDLSINNLTGTI 376 (1109)
Q Consensus 302 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~ 376 (1109)
+ |.+.+..+ .+ ..++|+.|++++|.+.+.+|..+ ..++.|+.++++.|.+ .+
T Consensus 263 ~-------------------~~~~~~~~-~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~ 319 (562)
T 3a79_B 263 W-------------------KCSVKLFQ-FF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LF 319 (562)
T ss_dssp H-------------------HHHHHHHH-HH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SS
T ss_pred H-------------------HHHHHHHH-hh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ec
Confidence 2 11111111 11 11244444444444444444444 4555555556655555 23
Q ss_pred C-cchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccc
Q 001274 377 P-LEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTC 455 (1109)
Q Consensus 377 p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 455 (1109)
| ..+..+ ....+|++|++++|.+.... ....+++|++|++++|++++.+|..+..+
T Consensus 320 p~~~~~~~---------------------~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 376 (562)
T 3a79_B 320 SKEALYSV---------------------FAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376 (562)
T ss_dssp CHHHHHHH---------------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSC
T ss_pred Chhhhhhh---------------------hccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhccc
Confidence 3 222221 00123444555555443221 11345566666666666666666666677
Q ss_pred cccceeecccccccccC--CccccCCcccceeccccccccC-CCCccccccccccEEEccCCccCCCCChhhcccccccE
Q 001274 456 RSLMQLMLGQNQLTGSL--PIEFYNLQNLSALELYQNRFSG-LIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVT 532 (1109)
Q Consensus 456 ~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 532 (1109)
++|++|++++|++++.. |..|.++++|++|+|++|++++ +.+..+..+++|++|++++|++++.+|..+. ++|++
T Consensus 377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~ 454 (562)
T 3a79_B 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV 454 (562)
T ss_dssp SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSE
T ss_pred CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCE
Confidence 77777777777776532 4567778888888888888877 4344577788888888888888766555443 67888
Q ss_pred EecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcc-cccccccceecccccccccccC
Q 001274 533 FNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEE-LGQLVNLELLKLSDNKLTGAIP 593 (1109)
Q Consensus 533 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p 593 (1109)
|+|++|+|+ .+|..+..+++|++|+|++|+|++ +|.. |..+++|+.|+|++|++.+..+
T Consensus 455 L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp EECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred EECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 888888888 677777788888888888888884 5554 8888888888888888876433
No 40
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=5e-44 Score=410.84 Aligned_cols=269 Identities=22% Similarity=0.307 Sum_probs=208.2
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeC------Cc
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQ------DS 874 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~ 874 (1109)
++|++.++||+|+||+||+|++. +|+.||||+++.........+.+.+|+++|++++|||||++++++... +.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 57999999999999999999975 799999999976555555567789999999999999999999997643 56
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
.|+|||||+ |+|.+++...+. +++..+..++.||+.||+||| +++||||||||+|||++.++.+||+|||+|+
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~~~---l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~ 206 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSSQP---LTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMAR 206 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSSSC---CCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred EEEEEeCCC-CCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeecceee
Confidence 799999995 689999976543 999999999999999999999 7799999999999999999999999999998
Q ss_pred cccCC---CCCCccccccccceeccccccCC-CCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCC-
Q 001274 955 LIDLP---YSKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVP- 1029 (1109)
Q Consensus 955 ~~~~~---~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~- 1029 (1109)
.+... ........+||+.|+|||++.+. .|+.++||||+||++|||++|+.||.+.. ..+.+.........
T Consensus 207 ~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~----~~~~l~~I~~~~g~p 282 (398)
T 4b99_A 207 GLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKN----YVHQLQLIMMVLGTP 282 (398)
T ss_dssp CC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSS----HHHHHHHHHHHHCCC
T ss_pred ecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCC----HHHHHHHHHHhcCCC
Confidence 76422 12234567899999999998875 46999999999999999999999998543 22222222211111
Q ss_pred Cchhhhh-----------hcchhhccc-----HHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1030 TSELFDK-----------RLDLSAKRT-----VEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1030 ~~~~~~~-----------~~~~~~~~~-----~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
....... ......... ......+.+++.+||..||++|||++|+++|-+...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~ 350 (398)
T 4b99_A 283 SPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAK 350 (398)
T ss_dssp CGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGTT
T ss_pred ChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcCHhhCc
Confidence 1111000 000000000 011245779999999999999999999999876543
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.7e-44 Score=402.31 Aligned_cols=295 Identities=31% Similarity=0.491 Sum_probs=257.7
Q ss_pred CCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCc--cceeeecC----CeEEEEeccCccccc--cccccccCcccc
Q 001274 27 VTSLTEEGVSLLEFKASLIDPSNNLESWNSSDMTPCN--WIGVECTD----FKVTSVDLHGLNLSG--ILSPRICDLPRL 98 (1109)
Q Consensus 27 ~~~~~~~~~all~~k~~~~~~~~~~~~W~~~~~~~c~--w~gv~C~~----~~v~~l~l~~~~l~g--~~~~~~~~l~~L 98 (1109)
+.|.++|++||++||+++.||. .+++|+.+ .+||. |.||+|+. ++|+.++|+++++.| .+|+.++++++|
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~-~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG-GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCCCHHHHHHHHHHHHhcCCcc-cccCCCCC-CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 3688999999999999999987 79999865 48998 99999985 689999999999999 899999999999
Q ss_pred ceeecc-cCccCCCCCccccCCCCCceEEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeec
Q 001274 99 VEFNIS-MNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYS 177 (1109)
Q Consensus 99 ~~L~ls-~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 177 (1109)
++|+|+ +|.+++.+|..++++++|++|+|++|.+++.+|..+..+++|++|+|++|.+++.+|..++++++|++|+|++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 999999 4999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccc-ccceeccccccccCCCCccccccccchhhhcccccccccCchhhhccccccceecccccccCCC
Q 001274 178 NNLTGAIPASISKLR-QLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLSGEI 256 (1109)
Q Consensus 178 n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 256 (1109)
|++++.+|..+++++ +|++|++++|.+++.+|..++.+. |++|+|++|.+++..|..|..+++|++|+|++|++++.+
T Consensus 159 N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 999989999999988 899999999999888888888887 888888888888888888888888888888888888655
Q ss_pred CCCccccccccceeeeeccceecCchhhhccCccceEEeecccccCccCcccCCCCcCcEEEccCCc-ccC
Q 001274 257 PPTIGNIQSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQ-LTG 326 (1109)
Q Consensus 257 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~ 326 (1109)
|. +..+++|++|+|++|++++.+|..++.+++|++|++++|++++.+|.. ..+++|+.|++++|+ +.|
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 54 777788888888888888788888888888888888888887777765 677777777777776 443
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.2e-42 Score=410.51 Aligned_cols=426 Identities=26% Similarity=0.304 Sum_probs=222.3
Q ss_pred cccccCcCCCceEEeecCCCCCCCCcccccccccceeccccccccCCCCccccccccchhhhcccccccccCchhhhccc
Q 001274 161 PEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLR 240 (1109)
Q Consensus 161 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 240 (1109)
|+.+ ..++|++|++++|++ |.+|.+|+++++|++|++++|.++|.+|.+++++.+|+.+++..|.. .
T Consensus 5 p~~~-~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~ 71 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------R 71 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------H
T ss_pred cccc-ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------c
Confidence 3444 468999999999999 79999999999999999999999999999999999999999987753 5
Q ss_pred cccceecccccccCCCCCCccccccccceeeeeccceecCchhhhccCccceEEeecccccCccCcccCCCCcCcEEEcc
Q 001274 241 NLTDLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLS 320 (1109)
Q Consensus 241 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 320 (1109)
++++|++++|++++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|++++ ++.. .++|++|+++
T Consensus 72 ~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~ 139 (454)
T 1jl5_A 72 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVS 139 (454)
T ss_dssp TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECC
T ss_pred CCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECc
Confidence 68899999999984 4442 3578888888888886 5543 3677777777777764 2221 1567777777
Q ss_pred CCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhcccccceEEcccccccccC
Q 001274 321 ENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTI 400 (1109)
Q Consensus 321 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 400 (1109)
+|++++ +| .++.+++|+.|++++|.+++ +|..+ .+|++|++++|++++ +| .+.++++|+.|++++|++++ +
T Consensus 140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l 210 (454)
T 1jl5_A 140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-L 210 (454)
T ss_dssp SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-C
T ss_pred CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-C
Confidence 777765 44 36666666666666666654 33322 355666666666554 33 35555555555555555553 2
Q ss_pred CCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCc
Q 001274 401 PPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQ 480 (1109)
Q Consensus 401 p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 480 (1109)
|... + +|++|++++|+++ .+| .+..+++|++|++++|++++ +|.. ++
T Consensus 211 ~~~~---~------------------------~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~ 257 (454)
T 1jl5_A 211 PDLP---L------------------------SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PP 257 (454)
T ss_dssp CCCC---T------------------------TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CT
T ss_pred CCCc---C------------------------cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---cc
Confidence 2211 2 4445555555554 233 24555555555555555553 2221 25
Q ss_pred ccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecC
Q 001274 481 NLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLS 560 (1109)
Q Consensus 481 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 560 (1109)
+|++|++++|++++ +|.. .++|++|++++|++++. |.. .++|++|++++|++++ ++.. .++|++|+++
T Consensus 258 ~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls 325 (454)
T 1jl5_A 258 SLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LCDL---PPSLEELNVS 325 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-ECCC---CTTCCEEECC
T ss_pred ccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-ccCC---cCcCCEEECC
Confidence 66666666666665 2332 25677777777776652 111 1467777777777764 2221 1467777787
Q ss_pred CCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCccccc--cccccccccchhhhhhccCCcccc
Q 001274 561 RNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSG--SIPVALGQLTALQIALNISHNNLS 638 (1109)
Q Consensus 561 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~l~~~L~Ls~N~l~ 638 (1109)
+|++++ +|.. +++|+.|++++|++++ +|. .+++|++|++++|++++ .+|.++++ |+.|++.
T Consensus 326 ~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~---------L~~n~~~ 388 (454)
T 1jl5_A 326 NNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED---------LRMNSHL 388 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE---------EECCC--
T ss_pred CCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh---------hhhcccc
Confidence 777775 5543 4677788888888774 454 36778888888888887 67776643 3457777
Q ss_pred ccccccccCccccceeecCCCcccc--CCchhhhccccceEEEccCcccccccCC
Q 001274 639 GVIPYELGNLQMLEALYLDDNQLIG--EIPASMGEQMSLLVCNLSNNNLVGTVPN 691 (1109)
Q Consensus 639 ~~~p~~~~~l~~L~~L~Ls~N~l~~--~ip~~~~~l~~L~~l~ls~N~l~g~~p~ 691 (1109)
|.+|.. +++|+.||+++|+++| .+|.++ +.+.+++|.+.+.+|.
T Consensus 389 ~~i~~~---~~~L~~L~ls~N~l~~~~~iP~sl------~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 389 AEVPEL---PQNLKQLHVETNPLREFPDIPESV------EDLRMNSERVVDPYEF 434 (454)
T ss_dssp -------------------------------------------------------
T ss_pred cccccc---cCcCCEEECCCCcCCccccchhhH------hheeCcCcccCCcccc
Confidence 777763 5789999999999987 777654 4566788888887764
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-42 Score=410.09 Aligned_cols=426 Identities=26% Similarity=0.274 Sum_probs=250.0
Q ss_pred ccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccccccCCCCccccccccchhh
Q 001274 142 FINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVL 221 (1109)
Q Consensus 142 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 221 (1109)
..+.|++|++++|.+ |.+|++|+++++|++|++++|+++|.+|.+++++++|+.+++..|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 458899999999999 89999999999999999999999999999999999999999887753 568899
Q ss_pred hcccccccccCchhhhccccccceecccccccCCCCCCccccccccceeeeeccceecCchhhhccCccceEEeeccccc
Q 001274 222 GLAQNSLEGFLPSELEKLRNLTDLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELN 301 (1109)
Q Consensus 222 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 301 (1109)
++++|.+++ +|.. .++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|++|++++|+++
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 999999986 3432 3789999999999996 7754 3789999999999985 3322 269999999999999
Q ss_pred CccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchh
Q 001274 302 GTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQ 381 (1109)
Q Consensus 302 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 381 (1109)
+ +| .++++++|++|++++|++++ +|.. +++|+.|++++|.+++ +| .+..+++|++|++++|++++ +|...
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~- 214 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP- 214 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC-
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc-
Confidence 6 77 69999999999999999996 5543 3699999999999997 55 69999999999999999996 45433
Q ss_pred cccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCcccccccee
Q 001274 382 NLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQL 461 (1109)
Q Consensus 382 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 461 (1109)
++|+.|++++|.++ .+|. ++.+++|++|++++|++++. |. .+++|+.|++++|++++ +|.. .++|++|
T Consensus 215 --~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L 282 (454)
T 1jl5_A 215 --LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFL 282 (454)
T ss_dssp --TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred --CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cCcCCEE
Confidence 58999999999998 6674 88899999999999998863 33 23667777777777765 3322 2455666
Q ss_pred ecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCccc
Q 001274 462 MLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLS 541 (1109)
Q Consensus 462 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 541 (1109)
++++|++++... . .++|++|++++|+++++ + .+ .++|++|++++|+++
T Consensus 283 ~ls~N~l~~l~~-~---~~~L~~L~l~~N~l~~i-~----~~-----------------------~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 283 DVSENIFSGLSE-L---PPNLYYLNASSNEIRSL-C----DL-----------------------PPSLEELNVSNNKLI 330 (454)
T ss_dssp ECCSSCCSEESC-C---CTTCCEEECCSSCCSEE-C----CC-----------------------CTTCCEEECCSSCCS
T ss_pred ECcCCccCcccC-c---CCcCCEEECcCCcCCcc-c----CC-----------------------cCcCCEEECCCCccc
Confidence 666666554211 0 13445555555554432 1 11 124455555555554
Q ss_pred ccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceeccccccccc--ccCcccCCCcccceeeccCcccccccccc
Q 001274 542 GTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTG--AIPSSLGGLARLTELQMGGNIFSGSIPVA 619 (1109)
Q Consensus 542 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 619 (1109)
+ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|.++.. ++.|.+.|.+|..
T Consensus 331 ~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~ 394 (454)
T 1jl5_A 331 E-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL 394 (454)
T ss_dssp C-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------
T ss_pred c-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc
Confidence 3 3332 244555555555555 2333 24555555555555554 34443332 2234455555553
Q ss_pred ccccchhhhhhccCCccccc--cccccccCccccceeecCCCccccCCchhhhc
Q 001274 620 LGQLTALQIALNISHNNLSG--VIPYELGNLQMLEALYLDDNQLIGEIPASMGE 671 (1109)
Q Consensus 620 ~~~l~~l~~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~ 671 (1109)
+ +.|+ .|++++|.+++ .+|. +|+.|.+.+|.+.+.+|.+...
T Consensus 395 ~---~~L~-~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 395 P---QNLK-QLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp ------------------------------------------------------
T ss_pred c---CcCC-EEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHH
Confidence 2 2333 35666666665 4553 3556667777777776655443
No 44
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=3.4e-43 Score=399.87 Aligned_cols=198 Identities=26% Similarity=0.360 Sum_probs=169.9
Q ss_pred HhcCCCCCceEecCCcceEEEEEec----CCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCc
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATLA----NGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDS 874 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 874 (1109)
..++|++.++||+|+||+||+|+++ .++.||||++... .....+.+|+++++.+ +|||||++++++.+.++
T Consensus 19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~----~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~ 94 (361)
T 4f9c_A 19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT----SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDH 94 (361)
T ss_dssp GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT----SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTE
T ss_pred ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc----cCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCE
Confidence 3578999999999999999999853 4678999998633 2345688999999988 69999999999999999
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCC-CceEEeecccc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEE-FQAHVGDFGLA 953 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~-~~~kl~DFG~a 953 (1109)
.|+||||+++|+|.+++.. +++.+++.++.||+.||+||| +++||||||||+|||++.+ +.+||+|||+|
T Consensus 95 ~~lvmE~~~g~~L~~~~~~------l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla 165 (361)
T 4f9c_A 95 VVIAMPYLEHESFLDILNS------LSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFGLA 165 (361)
T ss_dssp EEEEEECCCCCCHHHHHTT------CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred EEEEEeCCCcccHHHHHcC------CCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCCCC
Confidence 9999999999999999842 889999999999999999999 7799999999999999876 79999999999
Q ss_pred ccccCCCC---------------------------CCccccccccceeccccccCCC-CCccchhHHHHHHHHHHHhCCC
Q 001274 954 KLIDLPYS---------------------------KSMSAIAGSYGYIAPEYAYTMK-VTEKCDIYSFGVVLLELITGKS 1005 (1109)
Q Consensus 954 ~~~~~~~~---------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwSlGvll~elltg~~ 1005 (1109)
+....... ......+||+.|+|||++.+.+ |+.++||||+||++|||++|+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~ 245 (361)
T 4f9c_A 166 QGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRY 245 (361)
T ss_dssp EECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCS
T ss_pred cccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCC
Confidence 86532211 1123457999999999998764 8999999999999999999999
Q ss_pred CCCCc
Q 001274 1006 PVQSL 1010 (1109)
Q Consensus 1006 pf~~~ 1010 (1109)
||...
T Consensus 246 Pf~~~ 250 (361)
T 4f9c_A 246 PFYKA 250 (361)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 99653
No 45
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=2.5e-42 Score=411.53 Aligned_cols=254 Identities=24% Similarity=0.264 Sum_probs=205.8
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccC----CCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRG----EGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 876 (1109)
++|++.++||+|+||+||+|+.+ +|+.||||++.... ...........++.+++.++|||||++++++.+.+..|
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 57899999999999999999975 69999999996432 11111223334567788889999999999999999999
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
+|||||+||+|.+++...+. +++..++.++.||+.||+||| +++||||||||+|||++.+|.+||+|||+|+..
T Consensus 269 lVmEy~~GGdL~~~l~~~~~---l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~ 342 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLSQHGV---FSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDF 342 (689)
T ss_dssp EEECCCCSCBHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEecCCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceeeec
Confidence 99999999999999987553 999999999999999999999 889999999999999999999999999999876
Q ss_pred cCCCCCCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhh
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFD 1035 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1109)
.. ......+||+.|||||++.+ ..|+.++||||+||++|||++|+.||.+.... +.....+............
T Consensus 343 ~~---~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~-~~~~i~~~i~~~~~~~p~~-- 416 (689)
T 3v5w_A 343 SK---KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK-DKHEIDRMTLTMAVELPDS-- 416 (689)
T ss_dssp SS---CCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCC-CHHHHHHHHHHCCCCCCTT--
T ss_pred CC---CCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHhhcCCCCCCCcc--
Confidence 52 23355789999999999974 57999999999999999999999999864422 2333333333322211111
Q ss_pred hhcchhhcccHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHHHHH
Q 001274 1036 KRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPT-----MREVIAMMID 1079 (1109)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt-----~~evl~~L~~ 1079 (1109)
....+.+++.+|++.||++|++ ++||++|-+.
T Consensus 417 ------------~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF 453 (689)
T 3v5w_A 417 ------------FSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFF 453 (689)
T ss_dssp ------------SCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGGG
T ss_pred ------------CCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcCccc
Confidence 1134679999999999999998 7999988654
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2e-41 Score=403.27 Aligned_cols=363 Identities=20% Similarity=0.237 Sum_probs=238.5
Q ss_pred cccceecccccccCCCCCCccccccccceeeeeccceecC-chhhhccCccceEEeecccccCccCcccCCCCcCcEEEc
Q 001274 241 NLTDLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGGL-PKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDL 319 (1109)
Q Consensus 241 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 319 (1109)
+|++|+|++|++++..|..|+++++|++|+|++|.+.+.+ +..|.++++|++|++++|.+++..|..+.++++|++|+|
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 3444444444444434444444444444444444443222 333444444444444444444444444444555555555
Q ss_pred cCCcccCCCccc--ccCCCCcceEecccccccCccccc-ccCCCCccEEEcccCcccCCCCcchhcc--cccceEEcccc
Q 001274 320 SENQLTGFIPRE--LGLIPNLCLLQLFENMLQGSIPRE-LGQLTQLHKLDLSINNLTGTIPLEFQNL--TYLVDLQLFDN 394 (1109)
Q Consensus 320 s~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~N 394 (1109)
++|++++.++.. ++.+++|+.|++++|.+.+..|.. +..+++|++|++++|++++..+..+..+ .+|+.|++++|
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence 555554433222 444555555555555555444443 5556666666666666666656555555 55666666666
Q ss_pred cccccCCCc--------ccccCcCcEEEeccccccCccchhhhcc---cccceeecCCccccCCCCCCCccccccceeec
Q 001274 395 HLEGTIPPH--------IGVNSHLSVLDVSMNNLDGSIPPHLCMY---QKLIFLSLGSNRLSGNIPPGLKTCRSLMQLML 463 (1109)
Q Consensus 395 ~l~~~~p~~--------~~~~~~L~~L~Ls~N~l~~~~~~~l~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 463 (1109)
.+.+..+.. +..+++|++|++++|++.+..|..+... .+|+.|++++|.+.+.. +
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~ 256 (455)
T 3v47_A 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------F 256 (455)
T ss_dssp BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------T
T ss_pred cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------c
Confidence 666544433 2355778888888888887777777655 77888888888765431 1
Q ss_pred ccccccccCCccccCC--cccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCccc
Q 001274 464 GQNQLTGSLPIEFYNL--QNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLS 541 (1109)
Q Consensus 464 ~~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 541 (1109)
..+.+....+..|.++ ++|++|++++|.+++..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence 2233333333444433 57888888888888888888888888888888888888877888888888888888888888
Q ss_pred ccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCcccccccc
Q 001274 542 GTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIP 617 (1109)
Q Consensus 542 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 617 (1109)
+..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..|
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 7778888888888888888888887778888888888888888888887777778888888888888888887776
No 47
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=6.7e-42 Score=413.08 Aligned_cols=254 Identities=22% Similarity=0.283 Sum_probs=210.7
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|++.+.||+|+||+||+|+++ +|+.||||++.... ....+.+.+|+++|+.++|||||++++++.+.+..|+|||
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~--~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E 234 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH--ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYE 234 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEE
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccc--hhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEe
Confidence 68999999999999999999975 69999999997432 3345678899999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCC--CceEEeeccccccccC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEE--FQAHVGDFGLAKLIDL 958 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~--~~~kl~DFG~a~~~~~ 958 (1109)
||+||+|.+++..... .+++.++..++.||+.||+||| +++|+||||||+|||++.+ +.+||+|||+|+....
T Consensus 235 ~~~gg~L~~~i~~~~~--~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~ 309 (573)
T 3uto_A 235 FMSGGELFEKVADEHN--KMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP 309 (573)
T ss_dssp CCCCCBHHHHHTCTTS--CEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCT
T ss_pred ecCCCcHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEccC
Confidence 9999999999975443 3899999999999999999999 7799999999999999854 8999999999997752
Q ss_pred CCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 959 PYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 959 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.. ..+...................
T Consensus 310 --~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~----~~~~~~~i~~~~~~~~~~~~~~- 382 (573)
T 3uto_A 310 --KQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEN----DDETLRNVKSCDWNMDDSAFSG- 382 (573)
T ss_dssp --TSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS----HHHHHHHHHTTCCCCCSGGGTT-
T ss_pred --CCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC----HHHHHHHHHhCCCCCCcccccC-
Confidence 233456789999999999999999999999999999999999999997532 3333333333222211111111
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
....+.+|+.+||+.||++|||+.|+++|-+
T Consensus 383 ---------~s~~~~dli~~~L~~dp~~R~t~~e~l~Hpw 413 (573)
T 3uto_A 383 ---------ISEDGKDFIRKLLLADPNTRMTIHQALEHPW 413 (573)
T ss_dssp ---------SCHHHHHHHHTTSCSSGGGSCCHHHHHHSTT
T ss_pred ---------CCHHHHHHHHHHccCChhHCcCHHHHhcCcC
Confidence 1234678999999999999999999998754
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3e-41 Score=401.66 Aligned_cols=386 Identities=19% Similarity=0.228 Sum_probs=267.7
Q ss_pred ceEEeecccccCccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCcc-cccccCCCCccEEEccc
Q 001274 291 KKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSI-PRELGQLTQLHKLDLSI 369 (1109)
Q Consensus 291 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~ 369 (1109)
+.++.+++.++ .+|. +. ++|++|||++|.+++..|..++.+++|++|++++|.+.+.+ +..|..+++|++|+|++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 35666777766 4454 22 67788888888887777777777777777777777776444 45677777777777777
Q ss_pred CcccCCCCcchhcccccceEEcccccccccCCCc--ccccCcCcEEEeccccccCccchh-hhcccccceeecCCccccC
Q 001274 370 NNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPH--IGVNSHLSVLDVSMNNLDGSIPPH-LCMYQKLIFLSLGSNRLSG 446 (1109)
Q Consensus 370 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--~~~~~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~L~~N~l~~ 446 (1109)
|++++..|..|.++++|++|+|++|.+++..+.. +..+++|++|+|++|++.+..|.. +.++++|++|++++|++++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 7777666777777777777777777776644333 666777777777777777665654 6667777777777777776
Q ss_pred CCCCCCccc--cccceeecccccccccCCccc--------cCCcccceeccccccccCCCCcccccc---ccccEEEccC
Q 001274 447 NIPPGLKTC--RSLMQLMLGQNQLTGSLPIEF--------YNLQNLSALELYQNRFSGLIPPEIGKL---RNLERLHLSE 513 (1109)
Q Consensus 447 ~~~~~~~~l--~~L~~L~L~~N~l~~~~p~~~--------~~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~Ls~ 513 (1109)
..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|+|++|++++..|..+..+ ++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 666666655 566666666666665444332 234555556666665555545444433 4555555555
Q ss_pred CccCCCCChhhcccccccEEecccCcccccCCcCCCC--CCCCCeeecCCCcCccCCCcccccccccceecccccccccc
Q 001274 514 NYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGN--CVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGA 591 (1109)
Q Consensus 514 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 591 (1109)
|.+.+.. +..+.+.+..+..+.. .++|+.|++++|.+++..|..|..+++|+.|+|++|++++.
T Consensus 249 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 249 SYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp CTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred ccccccc--------------cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 5443211 0111222222222222 25777888888888777777777788888888888888777
Q ss_pred cCcccCCCcccceeeccCccccccccccccccchhhhhhccCCccccccccccccCccccceeecCCCccccCCchhhhc
Q 001274 592 IPSSLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIPASMGE 671 (1109)
Q Consensus 592 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~ 671 (1109)
.|..|.++++|++|++++|.+++..|..+.+++.|+ .|+|++|++++..|..|+.+++|++|||++|++++..+..+..
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE-VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC-EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC-EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence 777788888888888888888777777777777776 4888888888888889999999999999999999766677889
Q ss_pred cccceEEEccCcccccccCCCccc
Q 001274 672 QMSLLVCNLSNNNLVGTVPNTTVF 695 (1109)
Q Consensus 672 l~~L~~l~ls~N~l~g~~p~~~~~ 695 (1109)
+++|++|+|++|+++|.+|....+
T Consensus 394 l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp CTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCcccEEEccCCCcccCCCcchHH
Confidence 999999999999999999965444
No 49
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=4.8e-41 Score=381.20 Aligned_cols=288 Identities=42% Similarity=0.729 Sum_probs=235.9
Q ss_pred CCCCHHHHHHHhcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEE
Q 001274 790 EGFKYHNLLEATGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFC 869 (1109)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~ 869 (1109)
..+++.++....++|++.+.||+|+||+||+|+.++++.||||++..... ......+.+|+++++.++||||+++++++
T Consensus 18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 96 (326)
T 3uim_A 18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFC 96 (326)
T ss_dssp EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC------CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccC-chHHHHHHHHHHHHHhccCCCccceEEEE
Confidence 34677888999999999999999999999999988899999999975432 22334689999999999999999999999
Q ss_pred EeCCceEEEEEeccCCCHHHHhccCCC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEe
Q 001274 870 YHQDSNLLLYEYMENGSLGEQLHGNKQ-TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVG 948 (1109)
Q Consensus 870 ~~~~~~~lv~e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~ 948 (1109)
...+..++||||+++|+|.+++..... ...+++..+..++.|++.||+|||+.+..+|+||||||+||+++.++.+||+
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~ 176 (326)
T 3uim_A 97 MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVG 176 (326)
T ss_dssp CCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEEC
T ss_pred ecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEec
Confidence 999999999999999999999987543 2348999999999999999999995444499999999999999999999999
Q ss_pred eccccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcc----cCCcHHHHHHHhh
Q 001274 949 DFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLE----LGGDLVTWVRRSI 1024 (1109)
Q Consensus 949 DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~----~~~~~~~~~~~~~ 1024 (1109)
|||+++..............||+.|+|||++.+..++.++||||+|+++|||++|+.||.... ......+|+....
T Consensus 177 Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 256 (326)
T 3uim_A 177 DFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLL 256 (326)
T ss_dssp CCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTT
T ss_pred cCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHh
Confidence 999998775444444455679999999999999999999999999999999999999997322 3344555555433
Q ss_pred hccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1025 HEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
.... .....+.... .....+....+.+++.+||+.||++|||++|++++|++..
T Consensus 257 ~~~~-~~~~~~~~~~--~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~ 310 (326)
T 3uim_A 257 KEKK-LEALVDVDLQ--GNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDG 310 (326)
T ss_dssp SSCC-STTSSCTTCT--TSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSS
T ss_pred hchh-hhhhcChhhc--cccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcc
Confidence 3321 2233332222 2345677788999999999999999999999999998743
No 50
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=1.3e-40 Score=376.53 Aligned_cols=281 Identities=37% Similarity=0.600 Sum_probs=227.9
Q ss_pred HHHHHhcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCce
Q 001274 796 NLLEATGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSN 875 (1109)
Q Consensus 796 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 875 (1109)
++...+++|+..+.||+|+||+||+|++++++.||||++.... ....+.+.+|++++++++||||+++++++...+..
T Consensus 33 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 110 (321)
T 2qkw_B 33 DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPES--SQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEM 110 (321)
T ss_dssp CCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCC--SSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCC
T ss_pred HHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccC--hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeE
Confidence 3445668999999999999999999998889999999886442 33567899999999999999999999999999999
Q ss_pred EEEEEeccCCCHHHHhccCCC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 876 LLLYEYMENGSLGEQLHGNKQ-TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
++||||+++|+|.+++..... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 111 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~ 187 (321)
T 2qkw_B 111 ILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISK 187 (321)
T ss_dssp EEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECTTCCEEECCCTTCE
T ss_pred EEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECCCCCEEEeeccccc
Confidence 999999999999999976542 224899999999999999999999 7799999999999999999999999999998
Q ss_pred cccCCCC-CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccC--CcHHHHHHHhhhccCCCc
Q 001274 955 LIDLPYS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELG--GDLVTWVRRSIHEMVPTS 1031 (1109)
Q Consensus 955 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~--~~~~~~~~~~~~~~~~~~ 1031 (1109)
....... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||...... .....|........ ...
T Consensus 188 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~ 266 (321)
T 2qkw_B 188 KGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNG-QLE 266 (321)
T ss_dssp ECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTT-CCC
T ss_pred ccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccc-cHH
Confidence 6542222 2224456899999999999999999999999999999999999999765422 23444443322211 122
Q ss_pred hhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1032 ELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
...++... .....+....+.+++.+||+.||++|||++|++++|+.+....
T Consensus 267 ~~~~~~~~--~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~~ 317 (321)
T 2qkw_B 267 QIVDPNLA--DKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQ 317 (321)
T ss_dssp SSSSSSCT--TCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred HhcChhhc--cccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhcc
Confidence 22222221 1235567788999999999999999999999999999887543
No 51
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=4e-41 Score=377.86 Aligned_cols=264 Identities=30% Similarity=0.420 Sum_probs=207.1
Q ss_pred hcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
.++|++.+.||+|+||+||+|++ +++.||||++..........+.+.+|++++++++||||+++++++...+..++|||
T Consensus 36 ~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 114 (309)
T 3p86_A 36 WCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTE 114 (309)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEE
T ss_pred hhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEe
Confidence 46888999999999999999987 48899999997665555556789999999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCC--eEecCCCCCceeeCCCCceEEeeccccccccC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPH--IIHRDIKSNNILLDEEFQAHVGDFGLAKLIDL 958 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~ 958 (1109)
|+++|+|.+++........+++..+..++.||+.||+||| +.+ |+||||||+||+++.++.+||+|||+++....
T Consensus 115 ~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~ 191 (309)
T 3p86_A 115 YLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH---NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKAS 191 (309)
T ss_dssp CCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHH---TSSSCCCCTTCCGGGEEECTTCCEEECCCC-------
T ss_pred cCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH---cCCCCEECCCCChhhEEEeCCCcEEECCCCCCccccc
Confidence 9999999999987654344899999999999999999999 678 99999999999999999999999999986542
Q ss_pred CCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 959 PYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 959 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
. ........||+.|+|||++.+..++.++||||+||++|||++|+.||..... .+........... .+ .
T Consensus 192 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~----~~~~~~~~~~~~~-~~-~---- 260 (309)
T 3p86_A 192 T-FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNP----AQVVAAVGFKCKR-LE-I---- 260 (309)
T ss_dssp -----------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCH----HHHHHHHHHSCCC-CC-C----
T ss_pred c-ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHhcCCC-CC-C----
Confidence 2 2223456799999999999999999999999999999999999999975431 2222211111100 00 0
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccC
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVS 1085 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~ 1085 (1109)
.......+.+++.+||+.||++|||++++++.|+.......
T Consensus 261 ------~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~ 301 (309)
T 3p86_A 261 ------PRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAV 301 (309)
T ss_dssp ------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC---
T ss_pred ------CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCC
Confidence 11112357899999999999999999999999999886653
No 52
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=3.6e-40 Score=368.19 Aligned_cols=255 Identities=24% Similarity=0.364 Sum_probs=209.9
Q ss_pred hcCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.+.||+|+||+||+|++ .+++.||||++...... ..+.+.+|+.++++++||||+++++++...+..++||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 96 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP--KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM 96 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCS--CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeeccccc--HHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEE
Confidence 36899999999999999999986 47899999999755432 3567889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++|+|.+++.... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 97 e~~~~~~L~~~~~~~~----~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 169 (297)
T 3fxz_A 97 EYLAGGSLTDVVTETC----MDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE 169 (297)
T ss_dssp ECCTTCBHHHHHHHSC----CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCST
T ss_pred ECCCCCCHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCc
Confidence 9999999999997643 899999999999999999999 779999999999999999999999999999876532
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
........||+.|+|||++.+..++.++||||+||++|||++|+.||..... ............+....
T Consensus 170 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~----~~~~~~~~~~~~~~~~~------ 238 (297)
T 3fxz_A 170 -QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP----LRALYLIATNGTPELQN------ 238 (297)
T ss_dssp -TCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHHHHHHCSCCCSC------
T ss_pred -ccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHhCCCCCCCC------
Confidence 2234456799999999999999999999999999999999999999975332 12222111111110000
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
.......+.+++.+||+.||++|||++|++++-+..
T Consensus 239 -----~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h~~~~ 274 (297)
T 3fxz_A 239 -----PEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLK 274 (297)
T ss_dssp -----GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGG
T ss_pred -----ccccCHHHHHHHHHHccCChhHCcCHHHHhhChhhc
Confidence 111123577999999999999999999999876543
No 53
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=1.2e-39 Score=366.21 Aligned_cols=285 Identities=36% Similarity=0.549 Sum_probs=230.9
Q ss_pred CCCCHHHHHHHhcCCCCC------ceEecCCcceEEEEEecCCcEEEEEEeeccC--CCcchhHHHHHHHHHhccCCCCc
Q 001274 790 EGFKYHNLLEATGNFSEG------AVIGRGACGTVYKATLANGEVIAVKKIKLRG--EGATADNSFLAEISTLGKIRHRN 861 (1109)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~------~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~n 861 (1109)
..+.+.++..++++|... +.||+|+||+||+|+. +++.||||++.... ......+.+.+|++++++++|||
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 457888899999988877 9999999999999997 58899999997542 22334577999999999999999
Q ss_pred eeeEEEEEEeCCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC
Q 001274 862 IVKLYGFCYHQDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE 941 (1109)
Q Consensus 862 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~ 941 (1109)
|+++++++...+..++||||+++|+|.+++........+++..+..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~ 168 (307)
T 2nru_A 92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDE 168 (307)
T ss_dssp BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECT
T ss_pred eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEEEcC
Confidence 99999999999999999999999999999976544445899999999999999999999 779999999999999999
Q ss_pred CCceEEeeccccccccCCCCC-CccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHH
Q 001274 942 EFQAHVGDFGLAKLIDLPYSK-SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWV 1020 (1109)
Q Consensus 942 ~~~~kl~DFG~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~ 1020 (1109)
++.+||+|||+++........ ......||+.|+|||++.+ .++.++||||+|+++|+|++|+.||...........+.
T Consensus 169 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~ 247 (307)
T 2nru_A 169 AFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIK 247 (307)
T ss_dssp TCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHH
T ss_pred CCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHH
Confidence 999999999999876532222 1234578999999998765 58999999999999999999999998765544444444
Q ss_pred HHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhh
Q 001274 1021 RRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQ 1082 (1109)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 1082 (1109)
..............++... .........+.+++.+||+.||++|||+.+++++|+++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 248 EEIEDEEKTIEDYIDKKMN---DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp HHHHTTSCCHHHHSCSSCS---CCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred HHhhhhhhhhhhhcccccc---ccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 4333322222233332221 2345566788999999999999999999999999998753
No 54
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=2.5e-40 Score=373.98 Aligned_cols=254 Identities=23% Similarity=0.352 Sum_probs=213.8
Q ss_pred hcCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.+.||+|+||+||+|++ .+|+.||||++..........+.+.+|+++++.++||||+++++++...+..++||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 36899999999999999999997 47999999999866555556677899999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++|+|.+++...+. +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 94 e~~~~~~L~~~l~~~~~---l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~- 166 (328)
T 3fe3_A 94 EYASGGEVFDYLVAHGR---MKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTV- 166 (328)
T ss_dssp CCCTTCBHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSS-
T ss_pred ECCCCCcHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCC-
Confidence 99999999999976543 899999999999999999999 77999999999999999999999999999986642
Q ss_pred CCCCccccccccceeccccccCCCCC-ccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVT-EKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
.......+||+.|+|||++.+..++ .++||||+||++|||++|+.||.+. ...+...............
T Consensus 167 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~----~~~~~~~~i~~~~~~~p~~----- 236 (328)
T 3fe3_A 167 -GGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQ----NLKELRERVLRGKYRIPFY----- 236 (328)
T ss_dssp -SCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCS----SHHHHHHHHHHCCCCCCTT-----
T ss_pred -CCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCC----CHHHHHHHHHhCCCCCCCC-----
Confidence 2334567899999999999988875 7999999999999999999999753 3333333333332211111
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
....+.+++.+||+.||++|||++|++++-+..
T Consensus 237 ---------~s~~~~~li~~~L~~dP~~R~t~~eil~h~~~~ 269 (328)
T 3fe3_A 237 ---------MSTDCENLLKRFLVLNPIKRGTLEQIMKDRWIN 269 (328)
T ss_dssp ---------SCHHHHHHHHHHCCSSTTTSCCHHHHTTCTTTT
T ss_pred ---------CCHHHHHHHHHHCCCChhHCcCHHHHhcCHhhc
Confidence 123467899999999999999999999986654
No 55
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.4e-40 Score=373.94 Aligned_cols=257 Identities=21% Similarity=0.310 Sum_probs=204.4
Q ss_pred hcCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.+.||+|+||+||+|++ .+|+.||||++...... ...+.+.+|++++++++||||+++++++...+..++||
T Consensus 9 ~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~-~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 87 (347)
T 3zgw_A 9 LKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLG-SDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVL 87 (347)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC----CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccc-hHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEE
Confidence 47899999999999999999996 47999999999754332 33567899999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 88 E~~~gg~L~~~l~~~~~---l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~ 161 (347)
T 3zgw_A 88 EYCPGGELFDYIISQDR---LSEEETRVVFRQIVSAVAYVH---SQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGN 161 (347)
T ss_dssp ECCTTCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBC----
T ss_pred eCCCCCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCeEeCCccHHHEEEcCCCCEEEEeccCcccccCC
Confidence 99999999999976543 899999999999999999999 779999999999999999999999999999866533
Q ss_pred CCCCccccccccceeccccccCCCC-CccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
........+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+. ...+...............
T Consensus 162 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~----~~~~~~~~i~~~~~~~p~~----- 232 (347)
T 3zgw_A 162 KDYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDD----NVMALYKKIMRGKYDVPKW----- 232 (347)
T ss_dssp ----------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCS----SHHHHHHHHHHTCCCCCTT-----
T ss_pred CCccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCC----CHHHHHHHHHcCCCCCCCC-----
Confidence 3334456789999999999998876 89999999999999999999999753 3333333333332221111
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhh
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQ 1082 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 1082 (1109)
....+.+++.+||+.||++|||++|++++-+....
T Consensus 233 ---------~s~~~~~li~~~L~~dP~~Rps~~eil~hp~~~~~ 267 (347)
T 3zgw_A 233 ---------LSPSSILLLQQMLQVDPKKRISMKNLLNHPWIMQD 267 (347)
T ss_dssp ---------CCHHHHHHHHHHTCSSGGGSCCHHHHHTCHHHHTT
T ss_pred ---------CCHHHHHHHHHHcccCHhHCcCHHHHhcCcchhcC
Confidence 11346689999999999999999999999876643
No 56
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=4e-39 Score=363.90 Aligned_cols=273 Identities=23% Similarity=0.350 Sum_probs=216.4
Q ss_pred ccCCCCCCCCHHHHHHHhcC----------CCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHH
Q 001274 784 NYYFPKEGFKYHNLLEATGN----------FSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEIS 852 (1109)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~ 852 (1109)
+.++....++++++.++++. |...++||+|+||+||+|++. +|+.||||++..... ...+.+.+|+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~--~~~~~~~~E~~ 94 (321)
T 2c30_A 17 NLYFQSGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQ--QRRELLFNEVV 94 (321)
T ss_dssp --------CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC--CSHHHHHHHHH
T ss_pred ceeecCCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccch--hHHHHHHHHHH
Confidence 44555566788888777764 666789999999999999976 799999999975432 34567889999
Q ss_pred HhccCCCCceeeEEEEEEeCCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCC
Q 001274 853 TLGKIRHRNIVKLYGFCYHQDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDI 932 (1109)
Q Consensus 853 ~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dl 932 (1109)
++++++||||+++++++...+..++||||+++++|.+++... .+++..+..++.|++.||+||| +.+|+||||
T Consensus 95 ~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~----~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dl 167 (321)
T 2c30_A 95 IMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV----RLNEEQIATVCEAVLQALAYLH---AQGVIHRDI 167 (321)
T ss_dssp HHTTCCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCC
T ss_pred HHHhCCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCC
Confidence 999999999999999999999999999999999999998753 2899999999999999999999 779999999
Q ss_pred CCCceeeCCCCceEEeeccccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCccc
Q 001274 933 KSNNILLDEEFQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLEL 1012 (1109)
Q Consensus 933 kp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~ 1012 (1109)
||+||+++.++.+||+|||+++..... ........||+.|+|||++.+..++.++||||+|+++|||++|+.||....
T Consensus 168 kp~NIll~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~- 245 (321)
T 2c30_A 168 KSDSILLTLDGRVKLSDFGFCAQISKD-VPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDS- 245 (321)
T ss_dssp SGGGEEECTTCCEEECCCTTCEECCSS-SCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC-
T ss_pred CHHHEEECCCCcEEEeeeeeeeecccC-ccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-
Confidence 999999999999999999999876532 222345679999999999999999999999999999999999999997532
Q ss_pred CCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1013 GGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
..+..........+... . .......+.+++.+||+.||++|||++|++++-+...
T Consensus 246 ---~~~~~~~~~~~~~~~~~--~---------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~ 300 (321)
T 2c30_A 246 ---PVQAMKRLRDSPPPKLK--N---------SHKVSPVLRDFLERMLVRDPQERATAQELLDHPFLLQ 300 (321)
T ss_dssp ---HHHHHHHHHHSSCCCCT--T---------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGGG
T ss_pred ---HHHHHHHHhcCCCCCcC--c---------cccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhcc
Confidence 22222222111111100 0 0011235778999999999999999999999866543
No 57
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=7.2e-40 Score=360.60 Aligned_cols=257 Identities=25% Similarity=0.424 Sum_probs=213.1
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEEe
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEY 881 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 881 (1109)
++|++.+.||+|+||+||+|++.+++.||+|++... ....+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 86 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG---AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEF 86 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTT---SBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEeccc---ccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEe
Confidence 578888999999999999999988999999999743 23456799999999999999999999999999999999999
Q ss_pred ccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCCC
Q 001274 882 MENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPYS 961 (1109)
Q Consensus 882 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~ 961 (1109)
+++++|.+++..... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 87 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 161 (269)
T 4hcu_A 87 MEHGCLSDYLRTQRG--LFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY 161 (269)
T ss_dssp CTTCBHHHHHHTTTT--CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred CCCCcHHHHHHhcCc--ccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEecccccccccccccc
Confidence 999999999976544 3899999999999999999999 77999999999999999999999999999986653322
Q ss_pred CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcch
Q 001274 962 KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDL 1040 (1109)
Q Consensus 962 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1109)
.......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||.... ..+.............
T Consensus 162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~----~~~~~~~~~~~~~~~~--------- 228 (269)
T 4hcu_A 162 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS----NSEVVEDISTGFRLYK--------- 228 (269)
T ss_dssp HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC----HHHHHHHHHTTCCCCC---------
T ss_pred ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCC----HHHHHHHHhcCccCCC---------
Confidence 33344567889999999999999999999999999999999 999997533 2222222222111100
Q ss_pred hhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1041 SAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1041 ~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
.......+.+++.+||+.||++||+++|++++|+++..+
T Consensus 229 ----~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 229 ----PRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp ----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ----CCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 001123578999999999999999999999999988754
No 58
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=1.2e-39 Score=366.48 Aligned_cols=270 Identities=24% Similarity=0.342 Sum_probs=208.1
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEEe
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEY 881 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 881 (1109)
++|++.++||+|+||+||+|++.+++.||+|++..........+.+.+|++++++++||||+++++++...+..++||||
T Consensus 21 ~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 100 (311)
T 3niz_A 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEF 100 (311)
T ss_dssp CEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEEC
T ss_pred hhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcC
Confidence 68999999999999999999998899999999976554444557889999999999999999999999999999999999
Q ss_pred ccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCCC
Q 001274 882 MENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPYS 961 (1109)
Q Consensus 882 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~ 961 (1109)
+++ ++.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++..... .
T Consensus 101 ~~~-~l~~~~~~~~~--~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~-~ 173 (311)
T 3niz_A 101 MEK-DLKKVLDENKT--GLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIP-V 173 (311)
T ss_dssp CSE-EHHHHHHTCTT--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSC-C
T ss_pred CCC-CHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecCCC-c
Confidence 974 88888876544 3899999999999999999999 779999999999999999999999999999876522 2
Q ss_pred CCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCc-hhhhh---
Q 001274 962 KSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTS-ELFDK--- 1036 (1109)
Q Consensus 962 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--- 1036 (1109)
.......+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+........ .....+.. .....
T Consensus 174 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~ 252 (311)
T 3niz_A 174 RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSI-LGTPNPREWPQVQELPL 252 (311)
T ss_dssp C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHH-HCCCCTTTSGGGTTSHH
T ss_pred ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH-HCCCChHHhhhhhccch
Confidence 22344578999999999876 56899999999999999999999999876544444333332 22111100 00000
Q ss_pred ----hcchh-----hcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1037 ----RLDLS-----AKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1037 ----~~~~~-----~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
..... ..........+.+++.+|++.||++|||++|++++-+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f 304 (311)
T 3niz_A 253 WKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYF 304 (311)
T ss_dssp HHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGG
T ss_pred hhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcCccc
Confidence 00000 00011122457799999999999999999999987543
No 59
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=1.3e-39 Score=368.40 Aligned_cols=264 Identities=27% Similarity=0.338 Sum_probs=208.8
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCc----eEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDS----NLL 877 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----~~l 877 (1109)
++|++.++||+|+||+||+|++. ++.||||++... ......+.+|+.++++++||||+++++++..... .++
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~l 99 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQ---DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWL 99 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred hhchhhheecccCceEEEEEEEC-CCEEEEEEeecC---chHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEE
Confidence 67889999999999999999986 799999999643 2334556679999999999999999999988554 599
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCC----------CeEecCCCCCceeeCCCCceEE
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRP----------HIIHRDIKSNNILLDEEFQAHV 947 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~----------~ivH~Dlkp~NIll~~~~~~kl 947 (1109)
||||+++|+|.++++... +++..+..++.|++.||+||| +. +|+||||||+||+++.++.+||
T Consensus 100 v~e~~~~g~L~~~l~~~~----~~~~~~~~i~~qi~~al~~LH---~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL 172 (322)
T 3soc_A 100 ITAFHEKGSLSDFLKANV----VSWNELCHIAETMARGLAYLH---EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACI 172 (322)
T ss_dssp EEECCTTCBHHHHHHHCC----BCHHHHHHHHHHHHHHHHHHT---CCEEEETTEEECEEECSCCSGGGEEECTTCCEEE
T ss_pred EEecCCCCCHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHH---hhccccccccCCCEEeCCCChHhEEECCCCeEEE
Confidence 999999999999997643 899999999999999999999 77 9999999999999999999999
Q ss_pred eeccccccccCCCC-CCccccccccceeccccccC-----CCCCccchhHHHHHHHHHHHhCCCCCCCcccCC-------
Q 001274 948 GDFGLAKLIDLPYS-KSMSAIAGSYGYIAPEYAYT-----MKVTEKCDIYSFGVVLLELITGKSPVQSLELGG------- 1014 (1109)
Q Consensus 948 ~DFG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~------- 1014 (1109)
+|||+++....... .......||+.|+|||++.+ ..++.++|||||||++|||+||+.||.+.....
T Consensus 173 ~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~ 252 (322)
T 3soc_A 173 ADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEE 252 (322)
T ss_dssp CCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHH
T ss_pred ccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhh
Confidence 99999987653322 22344679999999999886 356678999999999999999999997643211
Q ss_pred -----cHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1015 -----DLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1015 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
....+......... ...... ..........+.+++.+||+.||++|||+.|+++.|+++...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 253 IGQHPSLEDMQEVVVHKKK--RPVLRD-----YWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp HCSSCCHHHHHHHHTTSCC--CCCCCG-----GGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred hccCCchhhhhhhhhcccC--CCCccc-----cccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 11222221111111 000000 001223456689999999999999999999999999988654
No 60
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=368.79 Aligned_cols=262 Identities=23% Similarity=0.366 Sum_probs=210.3
Q ss_pred cCCCCCceEecCCcceEEEEEec----CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA----NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLL 877 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 877 (1109)
++|++.+.||+|+||+||+|++. .+..||||+++.. ......+.+.+|++++++++||||+++++++.+.+..++
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAG-YTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTT-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCC-CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 57888999999999999999974 3556999999743 233455779999999999999999999999999999999
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
||||+++|+|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 128 v~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 202 (325)
T 3kul_A 128 VTEYMENGSLDTFLRTHDG--QFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLE 202 (325)
T ss_dssp EEECCTTCBHHHHHHTTTT--CSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred EeeCCCCCcHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCcccccc
Confidence 9999999999999976543 3899999999999999999999 7799999999999999999999999999998765
Q ss_pred CCCCCC--ccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhh
Q 001274 958 LPYSKS--MSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELF 1034 (1109)
Q Consensus 958 ~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1109)
...... .....+|+.|+|||++.+..++.++||||+|+++|||++ |+.||.... ..+............
T Consensus 203 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~----~~~~~~~~~~~~~~~---- 274 (325)
T 3kul_A 203 DDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMT----NRDVISSVEEGYRLP---- 274 (325)
T ss_dssp ----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSC----HHHHHHHHHTTCCCC----
T ss_pred cCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCC----HHHHHHHHHcCCCCC----
Confidence 322221 233456788999999999999999999999999999999 999997543 222222221111100
Q ss_pred hhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCC
Q 001274 1035 DKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSD 1086 (1109)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~ 1086 (1109)
........+.+++.+||+.||++|||+.++++.|+.+......
T Consensus 275 ---------~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~~ 317 (325)
T 3kul_A 275 ---------APMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPES 317 (325)
T ss_dssp ---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC-
T ss_pred ---------CCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCccc
Confidence 0111224578999999999999999999999999999866543
No 61
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=4.6e-39 Score=367.92 Aligned_cols=255 Identities=24% Similarity=0.281 Sum_probs=209.7
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCc----chhHHHHHHHHHhccCCCCceeeEEEEEEeCCceE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGA----TADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 876 (1109)
++|++.+.||+|+||+||+|+.+ +|+.||+|+++...... ...+.+.+|+.++++++||||+++++++...+..+
T Consensus 12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~ 91 (361)
T 2yab_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVV 91 (361)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEE
Confidence 67899999999999999999976 68999999997653321 13467899999999999999999999999999999
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCC----ceEEeeccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEF----QAHVGDFGL 952 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~----~~kl~DFG~ 952 (1109)
+||||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++ .+||+|||+
T Consensus 92 lv~e~~~gg~L~~~l~~~~~---l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~ 165 (361)
T 2yab_A 92 LILELVSGGELFDFLAQKES---LSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGL 165 (361)
T ss_dssp EEEECCCSCBHHHHHTTCSC---CBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCSS
T ss_pred EEEEcCCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEEecCC
Confidence 99999999999999976543 899999999999999999999 77999999999999998877 799999999
Q ss_pred cccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCch
Q 001274 953 AKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSE 1032 (1109)
Q Consensus 953 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1109)
++.... ........||+.|+|||++.+..++.++||||+||++|+|++|..||.+.. ..+..............
T Consensus 166 a~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~----~~~~~~~i~~~~~~~~~ 239 (361)
T 2yab_A 166 AHEIED--GVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT----KQETLANITAVSYDFDE 239 (361)
T ss_dssp CEECCT--TCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSS----HHHHHHHHHTTCCCCCH
T ss_pred ceEcCC--CCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHHhcCCCCCc
Confidence 987653 223355679999999999999999999999999999999999999997532 22333332222222111
Q ss_pred hhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1033 LFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
.+.. .....+.+++.+||..||++|||+.|++++-+
T Consensus 240 ~~~~----------~~s~~~~~li~~~L~~dP~~R~t~~e~l~hp~ 275 (361)
T 2yab_A 240 EFFS----------QTSELAKDFIRKLLVKETRKRLTIQEALRHPW 275 (361)
T ss_dssp HHHT----------TSCHHHHHHHHHHSCSSTTTSCCHHHHHTSTT
T ss_pred hhcc----------CCCHHHHHHHHHHCCCChhHCcCHHHHhcCcC
Confidence 1111 11235779999999999999999999997654
No 62
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=365.88 Aligned_cols=258 Identities=27% Similarity=0.462 Sum_probs=212.0
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|++.++||+|+||+||+|++. +++.||+|++.. ......+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~--~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 87 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIR--FDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITE 87 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESC--CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEecc--CCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEE
Confidence 57888999999999999999975 689999998853 234456789999999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
|+++|+|.+++...... +++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 88 ~~~~~~L~~~l~~~~~~--~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 162 (310)
T 3s95_A 88 YIKGGTLRGIIKSMDSQ--YPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEK 162 (310)
T ss_dssp CCTTCBHHHHHHHCCTT--SCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC---
T ss_pred ecCCCcHHHHHHhccCC--CCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceeccccc
Confidence 99999999999875443 899999999999999999999 7799999999999999999999999999998764322
Q ss_pred CCC-------------ccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCC-----cHHHHHHH
Q 001274 961 SKS-------------MSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGG-----DLVTWVRR 1022 (1109)
Q Consensus 961 ~~~-------------~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~-----~~~~~~~~ 1022 (1109)
... .....||+.|+|||++.+..++.++||||+|+++|||++|..||....... ........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~ 242 (310)
T 3s95_A 163 TQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDR 242 (310)
T ss_dssp -----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHH
T ss_pred ccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccc
Confidence 111 124579999999999999999999999999999999999999987543211 11111111
Q ss_pred hhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCC
Q 001274 1023 SIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSD 1086 (1109)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~ 1086 (1109)
.. .......+.+++.+||+.||++|||++++++.|+.+......
T Consensus 243 ~~--------------------~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~~ 286 (310)
T 3s95_A 243 YC--------------------PPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAG 286 (310)
T ss_dssp TC--------------------CTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred cC--------------------CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhccC
Confidence 00 011123477899999999999999999999999998766543
No 63
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=9.5e-40 Score=376.18 Aligned_cols=262 Identities=24% Similarity=0.389 Sum_probs=212.8
Q ss_pred cCCCCCceEecCCcceEEEEEec--------CCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeC
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA--------NGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQ 872 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 872 (1109)
++|++.+.||+|+||+||+|++. ++..||||+++.. ......+.+.+|+++++++ +||||+++++++...
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD-ATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTT-CBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCC-cCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 57888999999999999999852 3567999999743 2233456799999999999 899999999999999
Q ss_pred CceEEEEEeccCCCHHHHhccCCC-------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee
Q 001274 873 DSNLLLYEYMENGSLGEQLHGNKQ-------------TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL 939 (1109)
Q Consensus 873 ~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll 939 (1109)
+..++||||+++|+|.+++..... ...+++.++..++.||+.||+||| +.+|+||||||+||++
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll 236 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLV 236 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEEE
Confidence 999999999999999999976542 124789999999999999999999 7799999999999999
Q ss_pred CCCCceEEeeccccccccCCCC-CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHH
Q 001274 940 DEEFQAHVGDFGLAKLIDLPYS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLV 1017 (1109)
Q Consensus 940 ~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~ 1017 (1109)
+.++.+||+|||+++....... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+... ....
T Consensus 237 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~-~~~~ 315 (370)
T 2psq_A 237 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV-EELF 315 (370)
T ss_dssp CTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG-GGHH
T ss_pred CCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCH-HHHH
Confidence 9999999999999986643222 22344567889999999999999999999999999999999 9999986432 2222
Q ss_pred HHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1018 TWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
..+........ .......+.+++.+||+.||++||++.|++++|+.+....
T Consensus 316 ~~~~~~~~~~~----------------~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~ 366 (370)
T 2psq_A 316 KLLKEGHRMDK----------------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT 366 (370)
T ss_dssp HHHHTTCCCCC----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCC----------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 22221111110 1112235789999999999999999999999999987654
No 64
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.1e-39 Score=364.96 Aligned_cols=274 Identities=20% Similarity=0.250 Sum_probs=219.0
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC--ceEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD--SNLLL 878 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lv 878 (1109)
++|++.++||+|+||+||+|++. +++.||||++..... ....+.+.+|++++++++||||+++++++.... ..++|
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF-LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG-GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccc-cchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 57889999999999999999976 589999999974322 223567889999999999999999999998765 67999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee----CCCCceEEeeccccc
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL----DEEFQAHVGDFGLAK 954 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll----~~~~~~kl~DFG~a~ 954 (1109)
|||+++++|.+++........+++..+..++.||+.||+||| +.+|+||||||+||++ +.++.+||+|||+++
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~ 164 (319)
T 4euu_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (319)
T ss_dssp EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCE
T ss_pred EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCCce
Confidence 999999999999987654445899999999999999999999 7799999999999999 888889999999998
Q ss_pred cccCCCCCCccccccccceecccccc--------CCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhc
Q 001274 955 LIDLPYSKSMSAIAGSYGYIAPEYAY--------TMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHE 1026 (1109)
Q Consensus 955 ~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~ 1026 (1109)
..... .......||+.|+|||++. +..++.++||||+||++|||++|+.||..........+.+......
T Consensus 165 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~ 242 (319)
T 4euu_A 165 ELEDD--EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITG 242 (319)
T ss_dssp ECCTT--CCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHH
T ss_pred ecCCC--CceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcC
Confidence 76532 2334567999999999886 5778999999999999999999999998655444334444443333
Q ss_pred cCCC--c---------hhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1027 MVPT--S---------ELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1027 ~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
..+. . ..+.................+.+++.+||+.||++|||++|++++..+..
T Consensus 243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~ 308 (319)
T 4euu_A 243 KPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDIL 308 (319)
T ss_dssp CCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHT
T ss_pred CCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHh
Confidence 2110 0 00011112222334566778899999999999999999999999997654
No 65
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=4.3e-39 Score=361.18 Aligned_cols=264 Identities=29% Similarity=0.424 Sum_probs=208.3
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEEe
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEY 881 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 881 (1109)
++|++.++||+|+||+||+|++. ..+|+|+++.........+.+.+|++++++++||||+++++++. .+..++||||
T Consensus 36 ~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e~ 112 (307)
T 3lb7_A 36 SEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQW 112 (307)
T ss_dssp TSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred cceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEec
Confidence 68999999999999999999875 35899999866655566678999999999999999999999865 4568999999
Q ss_pred ccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC-C
Q 001274 882 MENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP-Y 960 (1109)
Q Consensus 882 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~-~ 960 (1109)
+++++|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++..... .
T Consensus 113 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~~ 187 (307)
T 3lb7_A 113 CEGSSLYKHLHVQET--KFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp CSSCBHHHHHHTSCC--CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCSSSEEECTTSCEEECCCCSSCC------
T ss_pred CCCCcHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCChhhEEEcCCCCEEEccCCCceecccccc
Confidence 999999999975544 3899999999999999999999 779999999999999999999999999999865421 1
Q ss_pred CCCccccccccceecccccc---CCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhh
Q 001274 961 SKSMSAIAGSYGYIAPEYAY---TMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKR 1037 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1109)
........||+.|+|||++. +..++.++||||+||++|||++|+.||............+....... .....
T Consensus 188 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~-~~~~~---- 262 (307)
T 3lb7_A 188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASP-DLSKL---- 262 (307)
T ss_dssp ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTCCCC-CSTTS----
T ss_pred cccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHHHHHHhcCCCCc-chhhh----
Confidence 22234557999999999986 66789999999999999999999999986443222222222111110 01111
Q ss_pred cchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccC
Q 001274 1038 LDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVS 1085 (1109)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~ 1085 (1109)
.......+.+++.+||+.+|++||++.|++++++.+....+
T Consensus 263 -------~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~p 303 (307)
T 3lb7_A 263 -------YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp -------CSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred -------hcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhcc
Confidence 11122467899999999999999999999999999876653
No 66
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.9e-39 Score=360.37 Aligned_cols=264 Identities=25% Similarity=0.354 Sum_probs=209.5
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCC-cchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEG-ATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.+.||+|+||+||+|++. +++.||+|++...... ....+.+.+|+.++++++||||+++++++...+..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 90 (294)
T 4eqm_A 11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM 90 (294)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence 67999999999999999999965 6899999998654332 334567899999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++++|.+++..... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 91 e~~~g~~L~~~l~~~~~---~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 164 (294)
T 4eqm_A 91 EYIEGPTLSEYIESHGP---LSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSET 164 (294)
T ss_dssp ECCCSCBHHHHHHHHCS---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC---
T ss_pred eCCCCCCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCccccccc
Confidence 99999999999976543 899999999999999999999 779999999999999999999999999999876533
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
.........||+.|+|||++.+..++.++||||+|+++|||++|+.||.+.. .............+.. ...
T Consensus 165 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~----~~~~~~~~~~~~~~~~---~~~-- 235 (294)
T 4eqm_A 165 SLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGET----AVSIAIKHIQDSVPNV---TTD-- 235 (294)
T ss_dssp ----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSC----HHHHHHHHHSSCCCCH---HHH--
T ss_pred cccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC----hHHHHHHHhhccCCCc---chh--
Confidence 3333445679999999999999999999999999999999999999997532 2222222223222111 000
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCC-CHHHHHHHHHHhhhcc
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRP-TMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RP-t~~evl~~L~~~~~~~ 1084 (1109)
........+.+++.+|++.||++|| +++++.+.++.+....
T Consensus 236 ----~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~ 277 (294)
T 4eqm_A 236 ----VRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHEN 277 (294)
T ss_dssp ----SCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSS
T ss_pred ----cccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhc
Confidence 0111224578999999999999998 8999999888776543
No 67
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.4e-39 Score=363.21 Aligned_cols=257 Identities=20% Similarity=0.228 Sum_probs=211.7
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.+.||+|+||+||+|++. +++.||+|++... ......+.+|+++++.++||||+++++++.+.+..++||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~ 80 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK---GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIF 80 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC---THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC---cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEE
Confidence 368899999999999999999976 6889999998733 334567889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC--CCceEEeecccccccc
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE--EFQAHVGDFGLAKLID 957 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~--~~~~kl~DFG~a~~~~ 957 (1109)
||+++|+|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+||+++. ++.+||+|||+++...
T Consensus 81 e~~~g~~L~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~ 155 (321)
T 1tki_A 81 EFISGLDIFERINTSAF--ELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK 155 (321)
T ss_dssp CCCCCCBHHHHHTSSSC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECC
T ss_pred EeCCCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECC
Confidence 99999999999976543 3899999999999999999999 779999999999999987 7899999999998765
Q ss_pred CCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhh
Q 001274 958 LPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKR 1037 (1109)
Q Consensus 958 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1109)
. ........||+.|+|||++.+..++.++||||+||++|||++|..||.+.. ..+.................+
T Consensus 156 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~----~~~~~~~i~~~~~~~~~~~~~- 228 (321)
T 1tki_A 156 P--GDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAET----NQQIIENIMNAEYTFDEEAFK- 228 (321)
T ss_dssp T--TCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHHTCCCCCHHHHT-
T ss_pred C--CCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCC----HHHHHHHHHcCCCCCChhhhc-
Confidence 2 223345679999999999999889999999999999999999999997532 223333332222221111100
Q ss_pred cchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1038 LDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
.....+.+++.+|++.||++|||+.|++++-+-..
T Consensus 229 ---------~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp~~~~ 263 (321)
T 1tki_A 229 ---------EISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQ 263 (321)
T ss_dssp ---------TSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHS
T ss_pred ---------cCCHHHHHHHHHHcCCChhHCcCHHHHhcChhhcc
Confidence 11235779999999999999999999999887653
No 68
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=1.4e-39 Score=358.13 Aligned_cols=258 Identities=24% Similarity=0.369 Sum_probs=212.6
Q ss_pred hcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
.++|++.+.||+|+||+||+|++++++.||||+++... ...+.+.+|++++++++||||+++++++...+..++|||
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 83 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS---MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTE 83 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT---BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC---CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEE
Confidence 36788999999999999999999888899999997432 245678999999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
|+++++|.+++..... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||.++......
T Consensus 84 ~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~ 158 (268)
T 3sxs_A 84 YISNGCLLNYLRSHGK--GLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ 158 (268)
T ss_dssp CCTTCBHHHHHHHHGG--GCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC
T ss_pred ccCCCcHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecchhh
Confidence 9999999999976543 3899999999999999999999 7799999999999999999999999999998765433
Q ss_pred CCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 961 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||.... ................
T Consensus 159 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~----~~~~~~~~~~~~~~~~-------- 226 (268)
T 3sxs_A 159 YVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYT----NSEVVLKVSQGHRLYR-------- 226 (268)
T ss_dssp EEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSC----HHHHHHHHHTTCCCCC--------
T ss_pred hhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccC----hHHHHHHHHcCCCCCC--------
Confidence 333344567788999999999899999999999999999999 999997543 1222222111111100
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
.......+.+++.+||+.||++|||++|++++|+.+...
T Consensus 227 -----~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 227 -----PHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp -----CTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred -----CCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence 000123577999999999999999999999999888654
No 69
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4e-39 Score=380.60 Aligned_cols=378 Identities=19% Similarity=0.197 Sum_probs=277.1
Q ss_pred CCceEEeecCCCCCCCCcccccccccceeccccccccCCCCccccccccchhhhcccccccccCchhhhccccccceecc
Q 001274 169 SLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILW 248 (1109)
Q Consensus 169 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 248 (1109)
.++..........+..+.+++++++|++|++++|.+++. | .++.+++|++|+|++|++++. | ++.+++|++|+|+
T Consensus 19 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls 93 (457)
T 3bz5_A 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACD 93 (457)
T ss_dssp HHHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECC
T ss_pred HHHHHHHHhcCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECc
Confidence 344444455566666777888888888888888888854 5 688888888888888888864 3 7888888888888
Q ss_pred cccccCCCCCCccccccccceeeeeccceecCchhhhccCccceEEeecccccCccCcccCCCCcCcEEEccCCcccCCC
Q 001274 249 QNHLSGEIPPTIGNIQSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFI 328 (1109)
Q Consensus 249 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 328 (1109)
+|++++. + ++++++|++|++++|++++ +| ++++++|++|++++|++++. .++++++|++|++++|+..+.+
T Consensus 94 ~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 94 SNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp SSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC
T ss_pred CCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc
Confidence 8888853 3 7788888888888888886 34 78888888888888888763 3777888888888888655444
Q ss_pred cccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccC
Q 001274 329 PRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNS 408 (1109)
Q Consensus 329 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 408 (1109)
.++.+++|+.|++++|.+++. | +..+++|++|++++|++++. .+..+++|+.|++++|++++ +| ++.++
T Consensus 165 --~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~ 233 (457)
T 3bz5_A 165 --DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLT 233 (457)
T ss_dssp --CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCT
T ss_pred --ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccC
Confidence 366777888888888877763 3 67777788888888887754 36777777778888877776 44 66777
Q ss_pred cCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccc
Q 001274 409 HLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELY 488 (1109)
Q Consensus 409 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 488 (1109)
+|++|++++|++++.. +..+++|+.|++++|+ |+.|++++|.+.+.+| +.++++|+.|+|+
T Consensus 234 ~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVT 294 (457)
T ss_dssp TCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCT
T ss_pred CCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECC
Confidence 7777777777777653 3456667777766653 4567777787776665 5677888888888
Q ss_pred cccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCC
Q 001274 489 QNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSA 568 (1109)
Q Consensus 489 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 568 (1109)
+|.+.+.+|. ...+|+.|++++| ++|++|+|++|++++. + ++++++|+.|++++|+|++
T Consensus 295 ~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-- 353 (457)
T 3bz5_A 295 HNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-- 353 (457)
T ss_dssp TCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--
T ss_pred CCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--
Confidence 8877666553 3345555555544 5788888888888864 3 7888888888888888875
Q ss_pred CcccccccccceecccccccccccCcccCCCcccceeeccCccccccccccccc
Q 001274 569 PEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIPVALGQ 622 (1109)
Q Consensus 569 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 622 (1109)
++.|..|++++|+++|. +.+..|..+++++|+++|.+|..+.+
T Consensus 354 ------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 354 ------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp ------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 24667778888888865 34566777788888888888776543
No 70
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.2e-39 Score=378.44 Aligned_cols=367 Identities=21% Similarity=0.244 Sum_probs=176.5
Q ss_pred ccccccCchhhhccccccceecccccccCCCCCCccccccccceeeeeccceecCchhhhccCccceEEeecccccCccC
Q 001274 226 NSLEGFLPSELEKLRNLTDLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIP 305 (1109)
Q Consensus 226 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 305 (1109)
....+..+..++++++|++|+|++|.+++ +| .++.+++|++|+|++|++++. | ++.+++|++|++++|.+++. +
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C
T ss_pred cCcCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e
Confidence 33333444455555555555555555553 23 455555555555555555542 2 55555555555555555542 2
Q ss_pred cccCCCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhcccc
Q 001274 306 HELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTY 385 (1109)
Q Consensus 306 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 385 (1109)
++++++|++|++++|++++. | ++.+++|+.|++++|.+++. .++.+++|++|++++|+..+.+ .+..+++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred --cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 55555555555555555542 2 44444455555555444442 1444555555555555333333 2444455
Q ss_pred cceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeeccc
Q 001274 386 LVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQ 465 (1109)
Q Consensus 386 L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 465 (1109)
|+.|++++|++++ +| ++.+++|++|++++|++++. .+..+++|++|++++|++++ +| +..+++|++|++++
T Consensus 172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 5555555555543 22 44444455555555544433 13444444444444444443 22 34444444444444
Q ss_pred ccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCC
Q 001274 466 NQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIP 545 (1109)
Q Consensus 466 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 545 (1109)
|++++.. +..+++|+.|++++| +|+.|++++|++.+.+| ++.+++|+.|+|++|...+.+|
T Consensus 243 N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 243 NPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp SCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 4444322 223334444444333 23334444444444333 3344555555555555444444
Q ss_pred cCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCccccccccccccccch
Q 001274 546 HELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIPVALGQLTA 625 (1109)
Q Consensus 546 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~ 625 (1109)
. ...+|+.|++++| ++|+.|++++|++++. + ++.+++|+.|++++|++++ + +.
T Consensus 304 ~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-l-------~~ 356 (457)
T 3bz5_A 304 C---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-F-------SS 356 (457)
T ss_dssp C---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-C-------TT
T ss_pred c---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-c-------cc
Confidence 2 2233444444433 3555666666666653 2 5556666666666666554 1 12
Q ss_pred hhhhhccCCccccccccccccCccccceeecCCCccccCCchhh
Q 001274 626 LQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIPASM 669 (1109)
Q Consensus 626 l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~ 669 (1109)
+. .|++++|.++|. +.+..|+.++|++|+++|.||..+
T Consensus 357 L~-~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 357 VG-KIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp GG-GSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred cc-cccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 22 245555555554 244455555555555555555443
No 71
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=1.4e-39 Score=361.98 Aligned_cols=270 Identities=24% Similarity=0.361 Sum_probs=204.6
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEEe
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEY 881 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 881 (1109)
++|++.+.||+|+||+||+|++.+++.||||++..........+.+.+|++++++++||||+++++++...+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 57888999999999999999998899999999975544334457788999999999999999999999999999999999
Q ss_pred ccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCCC
Q 001274 882 MENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPYS 961 (1109)
Q Consensus 882 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~ 961 (1109)
+++ +|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++..... .
T Consensus 82 ~~~-~l~~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~ 154 (288)
T 1ob3_A 82 LDQ-DLKKLLDVCEG--GLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIP-V 154 (288)
T ss_dssp CSE-EHHHHHHTSTT--CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---
T ss_pred cCC-CHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCcc-c
Confidence 975 99999876543 3899999999999999999999 779999999999999999999999999999876422 1
Q ss_pred CCccccccccceeccccccCC-CCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccC---CCc---hhh
Q 001274 962 KSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMV---PTS---ELF 1034 (1109)
Q Consensus 962 ~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~---~~~---~~~ 1034 (1109)
.......+|+.|+|||++.+. .++.++||||+||++|||++|+.||.+...........+....... +.. ..+
T Consensus 155 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (288)
T 1ob3_A 155 RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKY 234 (288)
T ss_dssp -------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccccc
Confidence 223445789999999998764 5899999999999999999999999864322222222221111000 000 000
Q ss_pred hhhcchh-----hcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1035 DKRLDLS-----AKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1035 ~~~~~~~-----~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
++..... ..........+.+++.+||+.||++|||++|++++-+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~ 283 (288)
T 1ob3_A 235 DPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAY 283 (288)
T ss_dssp CTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGG
T ss_pred ccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcCcc
Confidence 0000000 0000112345779999999999999999999998754
No 72
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=2.2e-39 Score=366.22 Aligned_cols=257 Identities=24% Similarity=0.339 Sum_probs=206.2
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|++.+.||+|+||+||+|++. +++.||||++..... ....+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA-VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccc-cchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 68999999999999999999876 789999999964432 2234678899999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
|+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 86 ~~~~~~L~~~l~~~~~---~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 159 (323)
T 3tki_A 86 YCSGGELFDRIEPDIG---MPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNN 159 (323)
T ss_dssp CCTTEEGGGGSBTTTB---CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred cCCCCcHHHHHhhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccCC
Confidence 9999999999976543 899999999999999999999 7799999999999999999999999999998654222
Q ss_pred -CCCccccccccceeccccccCCCC-CccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 961 -SKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 961 -~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
........||+.|+|||++.+..+ +.++||||+||++|||++|+.||............... ....... .
T Consensus 160 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~---~~~~~~~-~---- 231 (323)
T 3tki_A 160 RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE---KKTYLNP-W---- 231 (323)
T ss_dssp EECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHT---TCTTSTT-G----
T ss_pred cccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhc---ccccCCc-c----
Confidence 222345689999999999988776 78999999999999999999999865432221111111 1100000 0
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
......+.+++.+||+.||++|||++|++++-+..
T Consensus 232 -------~~~~~~~~~li~~~L~~dP~~R~t~~eil~h~~~~ 266 (323)
T 3tki_A 232 -------KKIDSAPLALLHKILVENPSARITIPDIKKDRWYN 266 (323)
T ss_dssp -------GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTT
T ss_pred -------ccCCHHHHHHHHHHccCChhhCcCHHHHhhChhhc
Confidence 01123467899999999999999999999987654
No 73
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=5.8e-39 Score=363.70 Aligned_cols=253 Identities=21% Similarity=0.252 Sum_probs=208.6
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.+.||+|+||+||+|+.+ +++.||+|+++.... .......+.+|+++++.++||||+++++++...+..++||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 57889999999999999999975 689999999974321 1223467889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 85 E~~~gg~L~~~l~~~~~---~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~- 157 (337)
T 1o6l_A 85 EYANGGELFFHLSRERV---FTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS- 157 (337)
T ss_dssp ECCTTCBHHHHHHHHSC---CCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC-
T ss_pred eCCCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhccc-
Confidence 99999999999976543 899999999999999999999 77999999999999999999999999999986432
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
........+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.. .................
T Consensus 158 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~----~~~~~~~i~~~~~~~p~------- 226 (337)
T 1o6l_A 158 DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD----HERLFELILMEEIRFPR------- 226 (337)
T ss_dssp TTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCCCCCCT-------
T ss_pred CCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCC----HHHHHHHHHcCCCCCCC-------
Confidence 2233456789999999999999999999999999999999999999997532 22222222222211111
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHHHHH
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRP-----TMREVIAMMID 1079 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RP-----t~~evl~~L~~ 1079 (1109)
.....+.+++.+||+.||++|| +++|+++|-+.
T Consensus 227 -------~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h~~f 264 (337)
T 1o6l_A 227 -------TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFF 264 (337)
T ss_dssp -------TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGG
T ss_pred -------CCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcCCCc
Confidence 1123567899999999999999 99999988543
No 74
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=1.4e-39 Score=361.14 Aligned_cols=259 Identities=22% Similarity=0.349 Sum_probs=210.5
Q ss_pred hcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
.++|++.+.||+|+||+||+|++.+++.||||+++.. ....+++.+|++++++++||||+++++++...+..++|||
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 99 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG---SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITE 99 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTT---SBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEC
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCC---CCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEe
Confidence 3578889999999999999999988889999999743 2345679999999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
|+++++|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.++......
T Consensus 100 ~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~ 174 (283)
T 3gen_A 100 YMANGCLLNYLREMRH--RFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 174 (283)
T ss_dssp CCTTCBHHHHHHCGGG--CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH
T ss_pred ccCCCcHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEccccccccccccc
Confidence 9999999999976433 3899999999999999999999 7799999999999999999999999999998764332
Q ss_pred CCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 961 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||..... .+.............
T Consensus 175 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~----~~~~~~~~~~~~~~~-------- 242 (283)
T 3gen_A 175 YTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN----SETAEHIAQGLRLYR-------- 242 (283)
T ss_dssp HHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCH----HHHHHHHHTTCCCCC--------
T ss_pred cccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccCh----hHHHHHHhcccCCCC--------
Confidence 223344567889999999999999999999999999999998 9999985432 122222111111000
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
.......+.+++.+||+.||++|||+++++++|.++....
T Consensus 243 -----~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~e 282 (283)
T 3gen_A 243 -----PHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDEE 282 (283)
T ss_dssp -----CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred -----CCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhcc
Confidence 0001235779999999999999999999999999987653
No 75
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=6.2e-39 Score=368.02 Aligned_cols=257 Identities=21% Similarity=0.258 Sum_probs=210.6
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.+.||+|+||+||+|+++ +++.||+|++..........+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~ 107 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 107 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 467999999999999999999875 6899999999866555555678899999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCC---CceEEeeccccccc
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEE---FQAHVGDFGLAKLI 956 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~---~~~kl~DFG~a~~~ 956 (1109)
||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.+ +.+||+|||+++..
T Consensus 108 e~~~gg~L~~~l~~~~~---~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~ 181 (362)
T 2bdw_A 108 DLVTGGELFEDIVAREF---YSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV 181 (362)
T ss_dssp CCCCSCBHHHHHTTCSC---CCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCC
T ss_pred ecCCCCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCcceEe
Confidence 99999999999976543 899999999999999999999 7799999999999999765 45999999999876
Q ss_pred cCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK 1036 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1109)
.. ........||+.|+|||++.+..++.++||||+||++|||++|+.||.+.. ..+.................
T Consensus 182 ~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~----~~~~~~~i~~~~~~~~~~~~- 254 (362)
T 2bdw_A 182 ND--SEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED----QHRLYAQIKAGAYDYPSPEW- 254 (362)
T ss_dssp TT--CCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHTCCCCCTTGG-
T ss_pred cC--CcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC----HHHHHHHHHhCCCCCCcccc-
Confidence 52 223345689999999999999999999999999999999999999997532 22222222222211111000
Q ss_pred hcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1037 RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
......+.+++.+||+.||++||++.|++++-+.
T Consensus 255 ---------~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~ 288 (362)
T 2bdw_A 255 ---------DTVTPEAKSLIDSMLTVNPKKRITADQALKVPWI 288 (362)
T ss_dssp ---------GGSCHHHHHHHHHHSCSSGGGSCCHHHHTTSHHH
T ss_pred ---------cCCCHHHHHHHHHHcCCChhhCcCHHHHhcCccc
Confidence 0112357799999999999999999999987554
No 76
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=3.2e-39 Score=372.00 Aligned_cols=260 Identities=24% Similarity=0.394 Sum_probs=200.4
Q ss_pred cCCCCCceEecCCcceEEEEEec----CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA----NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLL 877 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 877 (1109)
++|++.+.||+|+||+||+|++. ++..||||+++... .....+.+.+|++++++++||||+++++++...+..++
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY-TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 58999999999999999999864 57789999997432 33445689999999999999999999999999999999
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
||||+++|+|.++++.... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 124 v~e~~~~~sL~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 198 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLE 198 (373)
T ss_dssp EEECCTTCBHHHHHHTTTT--CSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred EEeCCCCCcHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCccccccc
Confidence 9999999999999987543 3899999999999999999999 7799999999999999999999999999998765
Q ss_pred CCCCCC--ccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhh
Q 001274 958 LPYSKS--MSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELF 1034 (1109)
Q Consensus 958 ~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1109)
...... .....+++.|+|||++.+..++.++|||||||++|||++ |+.||.... ..+............
T Consensus 199 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~----~~~~~~~i~~~~~~~---- 270 (373)
T 2qol_A 199 DDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMS----NQDVIKAVDEGYRLP---- 270 (373)
T ss_dssp ---------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCC----HHHHHHHHHTTEECC----
T ss_pred cCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCC----HHHHHHHHHcCCCCC----
Confidence 322211 122345778999999999999999999999999999998 999997543 122222211111000
Q ss_pred hhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1035 DKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
........+.+++.+||+.||++||++.+++++|+.+....
T Consensus 271 ---------~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~ 311 (373)
T 2qol_A 271 ---------PPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNP 311 (373)
T ss_dssp ---------CCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred ---------CCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence 01112245789999999999999999999999999987643
No 77
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.6e-39 Score=358.95 Aligned_cols=260 Identities=30% Similarity=0.472 Sum_probs=203.4
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEEe
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEY 881 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 881 (1109)
++|++.+.||+|+||+||+|++. ++.||||++.. ....+.+.+|++++++++||||+++++++. +..++||||
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~----~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~ 80 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIES----ESERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEY 80 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSS----TTHHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEEC
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecC----hhHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEc
Confidence 57888899999999999999985 78999999862 234577999999999999999999999876 458999999
Q ss_pred ccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCc-eEEeeccccccccCCC
Q 001274 882 MENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQ-AHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 882 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~-~kl~DFG~a~~~~~~~ 960 (1109)
+++|+|.+++........+++..+..++.|+++||+|||+.+..+|+||||||+||+++.++. +||+|||+++....
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~-- 158 (307)
T 2eva_A 81 AEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT-- 158 (307)
T ss_dssp CTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC--------
T ss_pred CCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccc--
Confidence 999999999987654444788999999999999999999432279999999999999998886 79999999976542
Q ss_pred CCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcch
Q 001274 961 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDL 1040 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1109)
......||+.|+|||++.+..++.++||||||+++|||++|+.||...... .............+. .
T Consensus 159 --~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~~~~~~~~~~~~~~~--~------- 225 (307)
T 2eva_A 159 --HMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGP--AFRIMWAVHNGTRPP--L------- 225 (307)
T ss_dssp --------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSS--HHHHHHHHHTTCCCC--C-------
T ss_pred --ccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCcc--HHHHHHHHhcCCCCC--c-------
Confidence 223446899999999999999999999999999999999999999754322 222221111111110 0
Q ss_pred hhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCCC
Q 001274 1041 SAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSDY 1087 (1109)
Q Consensus 1041 ~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~ 1087 (1109)
.......+.+++.+||+.||++|||+++++++|..+.+.....
T Consensus 226 ----~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~ 268 (307)
T 2eva_A 226 ----IKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGA 268 (307)
T ss_dssp ----BTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCCT
T ss_pred ----ccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccCC
Confidence 0111235778999999999999999999999999988776443
No 78
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=8.2e-39 Score=375.43 Aligned_cols=259 Identities=19% Similarity=0.217 Sum_probs=210.5
Q ss_pred HhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEE
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 878 (1109)
..++|++.+.||+|+||+||+|++. +|+.||+|++..........+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 3467999999999999999999864 789999999986654445567789999999999999999999999999999999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeC---CCCceEEeecccccc
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLD---EEFQAHVGDFGLAKL 955 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~---~~~~~kl~DFG~a~~ 955 (1109)
|||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++ .++.+||+|||+++.
T Consensus 89 ~E~~~gg~L~~~i~~~~~---~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~ 162 (444)
T 3soa_A 89 FDLVTGGELFEDIVAREY---YSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIE 162 (444)
T ss_dssp ECCCBCCBHHHHHHHCSC---CCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBC
T ss_pred EEeCCCCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCceeEE
Confidence 999999999999987654 899999999999999999999 77999999999999998 467899999999987
Q ss_pred ccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhh
Q 001274 956 IDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFD 1035 (1109)
Q Consensus 956 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1109)
.... ........||+.|+|||++.+..++.++||||+||++|+|++|+.||.+.. ..+.................
T Consensus 163 ~~~~-~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~----~~~~~~~i~~~~~~~~~~~~ 237 (444)
T 3soa_A 163 VEGE-QQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDED----QHRLYQQIKAGAYDFPSPEW 237 (444)
T ss_dssp CCTT-CCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSS----HHHHHHHHHHTCCCCCTTTT
T ss_pred ecCC-CceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCcc----HHHHHHHHHhCCCCCCcccc
Confidence 6532 223345689999999999999999999999999999999999999997532 22222222222211111000
Q ss_pred hhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1036 KRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
......+.+++.+||+.||++|||++|++++-+-
T Consensus 238 ----------~~~s~~~~~li~~~L~~dP~~Rpta~e~L~hp~~ 271 (444)
T 3soa_A 238 ----------DTVTPEAKDLINKMLTINPSKRITAAEALKHPWI 271 (444)
T ss_dssp ----------TTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSCTT
T ss_pred ----------ccCCHHHHHHHHHHcCCChhHCCCHHHHhcCccc
Confidence 0112357799999999999999999999988554
No 79
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=9.2e-39 Score=357.99 Aligned_cols=264 Identities=26% Similarity=0.369 Sum_probs=204.2
Q ss_pred hcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhcc--CCCCceeeEEEEEEeC----Cc
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGK--IRHRNIVKLYGFCYHQ----DS 874 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~----~~ 874 (1109)
.++|++.+.||+|+||+||+|++ +++.||||++... ....+.+|.+++.. ++||||+++++++... ..
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~ 80 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR-----DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQ 80 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG-----GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc-----cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCce
Confidence 36899999999999999999998 5899999998632 34556667666655 7999999999987653 34
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcC-----CCCeEecCCCCCceeeCCCCceEEee
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDC-----RPHIIHRDIKSNNILLDEEFQAHVGD 949 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dlkp~NIll~~~~~~kl~D 949 (1109)
.++||||+++|+|.++++.. .+++..+..++.|++.||+|||+.. +.+|+||||||+||+++.++.+||+|
T Consensus 81 ~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~D 156 (301)
T 3q4u_A 81 LWLITHYHEMGSLYDYLQLT----TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIAD 156 (301)
T ss_dssp EEEEECCCTTCBHHHHHTTC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECC
T ss_pred eEEehhhccCCCHHHHHhhc----ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEee
Confidence 78999999999999999643 3899999999999999999999422 45999999999999999999999999
Q ss_pred ccccccccCCCCC---CccccccccceeccccccCC------CCCccchhHHHHHHHHHHHhC----------CCCCCCc
Q 001274 950 FGLAKLIDLPYSK---SMSAIAGSYGYIAPEYAYTM------KVTEKCDIYSFGVVLLELITG----------KSPVQSL 1010 (1109)
Q Consensus 950 FG~a~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlGvll~elltg----------~~pf~~~ 1010 (1109)
||+++........ ......||+.|+|||++.+. .++.++||||+||++|||++| +.||...
T Consensus 157 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~ 236 (301)
T 3q4u_A 157 LGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDV 236 (301)
T ss_dssp CTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTT
T ss_pred CCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccccccccccccc
Confidence 9999866432221 12344799999999999876 456799999999999999999 8888765
Q ss_pred ccCCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1011 ELGGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
.........+.............-. ..........+.+++.+||+.||++|||+.|+++.|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 237 VPNDPSFEDMRKVVCVDQQRPNIPN------RWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp SCSSCCHHHHHHHHTTSCCCCCCCG------GGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCcchhhhhHHHhccCCCCCCCh------hhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 4333332323322211111111100 011234456789999999999999999999999999875
No 80
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=359.61 Aligned_cols=255 Identities=23% Similarity=0.303 Sum_probs=208.5
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCc----chhHHHHHHHHHhccCCCCceeeEEEEEEeCCceE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGA----TADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 876 (1109)
++|++.+.||+|+||+||+|++. +++.||+|+++...... ...+.+.+|++++++++||||+++++++...+..+
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 90 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI 90 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 56889999999999999999975 68999999997553321 23567899999999999999999999999999999
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCC----ceEEeeccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEF----QAHVGDFGL 952 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~----~~kl~DFG~ 952 (1109)
+||||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++ .+||+|||+
T Consensus 91 lv~e~~~~~~L~~~l~~~~~---~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~ 164 (326)
T 2y0a_A 91 LILELVAGGELFDFLAEKES---LTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGL 164 (326)
T ss_dssp EEEECCCSCBHHHHHTTSSC---CBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCTT
T ss_pred EEEEcCCCCCHHHHHHhcCC---cCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECCC
Confidence 99999999999999976543 899999999999999999999 77999999999999998887 899999999
Q ss_pred cccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCch
Q 001274 953 AKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSE 1032 (1109)
Q Consensus 953 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1109)
++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.. ..+..............
T Consensus 165 a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~----~~~~~~~~~~~~~~~~~ 238 (326)
T 2y0a_A 165 AHKIDFG--NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT----KQETLANVSAVNYEFED 238 (326)
T ss_dssp CEECCTT--SCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSS----HHHHHHHHHHTCCCCCH
T ss_pred CeECCCC--CccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCC----HHHHHHHHHhcCCCcCc
Confidence 9876522 23345679999999999999999999999999999999999999997532 22222222221111111
Q ss_pred hhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1033 LFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
... ......+.+++.+||+.||++|||+.|++++-+
T Consensus 239 ~~~----------~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~ 274 (326)
T 2y0a_A 239 EYF----------SNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPW 274 (326)
T ss_dssp HHH----------TTSCHHHHHHHHHHSCSSGGGSCCHHHHHHSTT
T ss_pred ccc----------ccCCHHHHHHHHHHccCChhhCCCHHHHhcCCC
Confidence 110 011235779999999999999999999998754
No 81
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=8.5e-39 Score=356.53 Aligned_cols=268 Identities=22% Similarity=0.349 Sum_probs=207.1
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|++.++||+|+||+||+|++. +++.||||++..........+.+.+|++++++++||||+++++++..++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 57889999999999999999975 68999999998665555556788999999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
|+++ ++.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....+
T Consensus 82 ~~~~-~l~~~~~~~~~--~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~- 154 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSCNG--DLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIP- 154 (292)
T ss_dssp CCSE-EHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSC-
T ss_pred cCCC-CHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCc-
Confidence 9975 66666654333 3899999999999999999999 779999999999999999999999999999876522
Q ss_pred CCCccccccccceeccccccCCC-CCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccC-CCchhhhhhc
Q 001274 961 SKSMSAIAGSYGYIAPEYAYTMK-VTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMV-PTSELFDKRL 1038 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 1038 (1109)
........||+.|+|||++.+.. ++.++||||+||++|||++|..||.... ...+.......... +..+.+....
T Consensus 155 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~ 231 (292)
T 3o0g_A 155 VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN---DVDDQLKRIFRLLGTPTEEQWPSMT 231 (292)
T ss_dssp CSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCS---SHHHHHHHHHHHHCCCCTTTCTTGG
T ss_pred cccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCC---CHHHHHHHHHHHhCCCChhhhhhhc
Confidence 23334567899999999998766 8999999999999999999988864322 22222222221111 0111100000
Q ss_pred c--------------hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1039 D--------------LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1039 ~--------------~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
. ............+.+++.+|++.||++|||++|++++-+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f 286 (292)
T 3o0g_A 232 KLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYF 286 (292)
T ss_dssp GSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGG
T ss_pred ccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcCccc
Confidence 0 0000111223457799999999999999999999987543
No 82
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=1.2e-39 Score=376.86 Aligned_cols=259 Identities=24% Similarity=0.366 Sum_probs=209.3
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|++.+.||+|+||+||+|++. +++.||||+++.. ......+.+.+|++++++++||||+++++++...+..++|||
T Consensus 114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 192 (377)
T 3cbl_A 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRET-LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 192 (377)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTT-SCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEcccc-CCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence 57888899999999999999976 7899999998743 223344678899999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
|+++|+|.++++.... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 193 ~~~~g~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~ 267 (377)
T 3cbl_A 193 LVQGGDFLTFLRTEGA--RLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGV 267 (377)
T ss_dssp CCTTCBHHHHHHHHGG--GCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSE
T ss_pred cCCCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCc
Confidence 9999999999976543 3899999999999999999999 7799999999999999999999999999998654221
Q ss_pred CCCc-cccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 961 SKSM-SAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 961 ~~~~-~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
.... ....+++.|+|||++.+..++.++|||||||++|||++ |..||..... ......+.... ..+.
T Consensus 268 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~-~~~~~~~~~~~--~~~~-------- 336 (377)
T 3cbl_A 268 YAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSN-QQTREFVEKGG--RLPC-------- 336 (377)
T ss_dssp EECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCH-HHHHHHHHTTC--CCCC--------
T ss_pred eeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH-HHHHHHHHcCC--CCCC--------
Confidence 1111 22345778999999998999999999999999999999 9999976431 11112111110 0110
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
.......+.+++.+||+.||++|||++++++.|+.+...
T Consensus 337 ------~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 337 ------PELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp ------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ------CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 011123577999999999999999999999999988653
No 83
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=1.1e-38 Score=365.99 Aligned_cols=259 Identities=23% Similarity=0.283 Sum_probs=203.9
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.+.||+|+||+||+|+.. +++.||||++.... ...+.+.+|+.+++.++||||+++++++...+..++||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 95 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA---AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIM 95 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST---TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc---cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEE
Confidence 368999999999999999999976 78999999997432 23467889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCc--eEEeecccccccc
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQ--AHVGDFGLAKLID 957 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~--~kl~DFG~a~~~~ 957 (1109)
||+++|+|.+++...+. +++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+++...
T Consensus 96 e~~~~~~L~~~l~~~~~---~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~ 169 (361)
T 3uc3_A 96 EYASGGELYERICNAGR---FSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSV 169 (361)
T ss_dssp ECCCSCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC----
T ss_pred EeCCCCCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCcccccc
Confidence 99999999999976543 899999999999999999999 779999999999999987765 9999999997543
Q ss_pred CCCCCCccccccccceeccccccCCCCCcc-chhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh
Q 001274 958 LPYSKSMSAIAGSYGYIAPEYAYTMKVTEK-CDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK 1036 (1109)
Q Consensus 958 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1109)
.........||+.|+|||++.+..++.+ +||||+||++|||++|+.||.+..........+.............
T Consensus 170 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~--- 244 (361)
T 3uc3_A 170 --LHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDD--- 244 (361)
T ss_dssp -------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTT---
T ss_pred --ccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCc---
Confidence 1222345679999999999988888765 8999999999999999999987665566665555443332211110
Q ss_pred hcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhh
Q 001274 1037 RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQ 1082 (1109)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 1082 (1109)
. .....+.+++.+||+.||++|||+.|+++|-+....
T Consensus 245 -~--------~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~ 281 (361)
T 3uc3_A 245 -I--------RISPECCHLISRIFVADPATRISIPEIKTHSWFLKN 281 (361)
T ss_dssp -S--------CCCHHHHHHHHHHSCSCTTTSCCHHHHHTSHHHHTT
T ss_pred -C--------CCCHHHHHHHHHHccCChhHCcCHHHHHhCcchhcC
Confidence 0 011357799999999999999999999999877543
No 84
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=3.5e-38 Score=352.68 Aligned_cols=263 Identities=19% Similarity=0.253 Sum_probs=213.1
Q ss_pred cCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.+.||+|+||+||+|++ .+++.||||++.... ..+.+.+|+++++++ +|++++++++++......++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~ 85 (298)
T 1csn_A 10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS----DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVI 85 (298)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT----TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC----ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEE
Confidence 5789999999999999999996 478999999986432 334688999999999 7999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCc-----eEEeeccccc
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQ-----AHVGDFGLAK 954 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~-----~kl~DFG~a~ 954 (1109)
||+ +++|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++. +||+|||+++
T Consensus 86 e~~-~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~ 159 (298)
T 1csn_A 86 DLL-GPSLEDLLDLCGR--KFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK 159 (298)
T ss_dssp ECC-CCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred Eec-CCCHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECcccc
Confidence 999 9999999986543 3899999999999999999999 789999999999999987776 9999999998
Q ss_pred cccCCCCC------CccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhc--
Q 001274 955 LIDLPYSK------SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHE-- 1026 (1109)
Q Consensus 955 ~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~-- 1026 (1109)
........ ......||+.|+|||++.+..++.++||||+|+++|||++|+.||......... .........
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~-~~~~~~~~~~~ 238 (298)
T 1csn_A 160 FYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNK-QKYERIGEKKQ 238 (298)
T ss_dssp ESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHH-HHHHHHHHHHH
T ss_pred ccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccH-HHHHHHHhhcc
Confidence 76533221 234567999999999999999999999999999999999999999875432222 111111111
Q ss_pred cCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCC
Q 001274 1027 MVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSD 1086 (1109)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~ 1086 (1109)
..+..+. .......+.+++.+||+.||++||++++|++.|+++......
T Consensus 239 ~~~~~~~-----------~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~ 287 (298)
T 1csn_A 239 STPLREL-----------CAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNT 287 (298)
T ss_dssp HSCHHHH-----------TTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred CccHHHH-----------HhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCC
Confidence 0111110 011224678999999999999999999999999999876543
No 85
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=356.91 Aligned_cols=249 Identities=21% Similarity=0.265 Sum_probs=198.2
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.++||+|+||+||+|++. +++.||||++............+..|+..+.++ +||||+++++++.+.+..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 57999999999999999999976 799999999875544444555666677666555 8999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+ +++|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 137 e~~-~~~L~~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~ 210 (311)
T 3p1a_A 137 ELC-GPSLQQHCEAWGA--SLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTA 210 (311)
T ss_dssp ECC-CCBHHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGGGCEEECCCTTCEECC--
T ss_pred ecc-CCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEccceeeeecccC
Confidence 999 7799999876543 3999999999999999999999 679999999999999999999999999999876422
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
.......||+.|+|||++.+ .++.++|||||||++|||++|..|+.... . ......... ...+.
T Consensus 211 --~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~------~-~~~~~~~~~--~~~~~---- 274 (311)
T 3p1a_A 211 --GAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGE------G-WQQLRQGYL--PPEFT---- 274 (311)
T ss_dssp ------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHH------H-HHHHTTTCC--CHHHH----
T ss_pred --CCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCcc------H-HHHHhccCC--Ccccc----
Confidence 22344569999999998876 79999999999999999999977765321 1 111111111 11111
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
......+.+++.+||+.||++|||++|++++-+
T Consensus 275 ------~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~ 307 (311)
T 3p1a_A 275 ------AGLSSELRSVLVMMLEPDPKLRATAEALLALPV 307 (311)
T ss_dssp ------TTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGG
T ss_pred ------cCCCHHHHHHHHHHcCCChhhCcCHHHHHhCcc
Confidence 112246789999999999999999999998654
No 86
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=1.8e-39 Score=373.58 Aligned_cols=272 Identities=25% Similarity=0.405 Sum_probs=216.3
Q ss_pred CCHHHHHHHhcCCCCCceEecCCcceEEEEEe------cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceee
Q 001274 792 FKYHNLLEATGNFSEGAVIGRGACGTVYKATL------ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVK 864 (1109)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~ 864 (1109)
+....+....++|++.+.||+|+||.||+|++ .+++.||||+++.. ......+.+.+|+++++++ +||||++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hpniv~ 90 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG-ATHSEHRALMSELKILIHIGHHLNVVN 90 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCc-CCHHHHHHHHHHHHHHHhhcCCcceee
Confidence 33444445568899999999999999999973 24688999999743 2333456799999999999 7899999
Q ss_pred EEEEEEeCCc-eEEEEEeccCCCHHHHhccCCC-----------------------------------------------
Q 001274 865 LYGFCYHQDS-NLLLYEYMENGSLGEQLHGNKQ----------------------------------------------- 896 (1109)
Q Consensus 865 l~~~~~~~~~-~~lv~e~~~~gsL~~~l~~~~~----------------------------------------------- 896 (1109)
+++++...+. .++||||+++|+|.+++.....
T Consensus 91 ~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3vhe_A 91 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEE 170 (359)
T ss_dssp EEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-----------------------------------------
T ss_pred eeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccc
Confidence 9999987654 8999999999999999976542
Q ss_pred ----------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 897 ----------------TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 897 ----------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
...+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~ 247 (359)
T 3vhe_A 171 KSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 247 (359)
T ss_dssp -------------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCT
T ss_pred cccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeecccc
Confidence 112889999999999999999999 7799999999999999999999999999998664322
Q ss_pred C-CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 961 S-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 961 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
. .......||+.|+|||++.+..++.++||||+||++|||++ |+.||.+..........+........+ .
T Consensus 248 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~--~------ 319 (359)
T 3vhe_A 248 DYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP--D------ 319 (359)
T ss_dssp TCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCC--T------
T ss_pred cchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCCCCC--C------
Confidence 2 22344568899999999999999999999999999999998 999998654433333333322111111 0
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
.....+.+++.+||+.||++|||++|++++|+.+...
T Consensus 320 --------~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 356 (359)
T 3vhe_A 320 --------YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 356 (359)
T ss_dssp --------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence 1123577899999999999999999999999988754
No 87
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=7.2e-39 Score=372.51 Aligned_cols=275 Identities=20% Similarity=0.222 Sum_probs=210.6
Q ss_pred hcCCCCCceEecC--CcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEE
Q 001274 801 TGNFSEGAVIGRG--ACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLL 877 (1109)
Q Consensus 801 ~~~~~~~~~lG~G--~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 877 (1109)
.++|++.++||+| +||+||+|++. +++.||||++..........+.+.+|++++++++||||+++++++...+..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 3689999999999 99999999976 69999999998765555556788899999999999999999999999999999
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
||||+++|+|.+++...... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||.+....
T Consensus 104 v~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~ 179 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHFMD-GMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMI 179 (389)
T ss_dssp EEECCTTCBHHHHHHHTCTT-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred EEEccCCCCHHHHHhhhccc-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence 99999999999999765322 3899999999999999999999 7799999999999999999999999999986542
Q ss_pred CCC------CCCccccccccceeccccccC--CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCC
Q 001274 958 LPY------SKSMSAIAGSYGYIAPEYAYT--MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVP 1029 (1109)
Q Consensus 958 ~~~------~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~ 1029 (1109)
... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..........+.........
T Consensus 180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~ 259 (389)
T 3gni_B 180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLD 259 (389)
T ss_dssp ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC----------
T ss_pred cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCcccc
Confidence 111 111233478999999999987 679999999999999999999999998755433333222211110000
Q ss_pred Cchhhhhh-----------------c-----------chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1030 TSELFDKR-----------------L-----------DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1030 ~~~~~~~~-----------------~-----------~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
........ . .............+.+++.+||+.||++|||++|++++-+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~hp~f 337 (389)
T 3gni_B 260 TSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFF 337 (389)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTSGGG
T ss_pred ccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcCHHH
Confidence 00000000 0 00000111223458899999999999999999999988543
No 88
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=5.8e-40 Score=383.63 Aligned_cols=267 Identities=21% Similarity=0.214 Sum_probs=211.1
Q ss_pred HHHHHhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC
Q 001274 796 NLLEATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD 873 (1109)
Q Consensus 796 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 873 (1109)
++....++|++.++||+|+||+||+|+++ +++.||||+++.... .......+.+|+.++..++||||+++++++.+.+
T Consensus 68 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~ 147 (437)
T 4aw2_A 68 QMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDN 147 (437)
T ss_dssp HHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSS
T ss_pred cccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCC
Confidence 33445678999999999999999999976 578999999974211 1112345889999999999999999999999999
Q ss_pred ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccc
Q 001274 874 SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLA 953 (1109)
Q Consensus 874 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a 953 (1109)
..|+||||+++|+|.+++..... .+++..++.++.||+.||+||| +.+||||||||+|||++.++.+||+|||+|
T Consensus 148 ~~~lV~Ey~~gg~L~~~l~~~~~--~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~DFGla 222 (437)
T 4aw2_A 148 NLYLVMDYYVGGDLLTLLSKFED--RLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSC 222 (437)
T ss_dssp EEEEEECCCTTCBHHHHHHTTTT--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred EEEEEEecCCCCcHHHHHHHccC--CCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcchhhh
Confidence 99999999999999999987433 3899999999999999999999 779999999999999999999999999999
Q ss_pred ccccCCCCCCccccccccceecccccc-----CCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccC
Q 001274 954 KLIDLPYSKSMSAIAGSYGYIAPEYAY-----TMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMV 1028 (1109)
Q Consensus 954 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~ 1028 (1109)
+.............+||+.|+|||++. +..++.++||||+||++|||++|+.||.+....+.....+........
T Consensus 223 ~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~ 302 (437)
T 4aw2_A 223 LKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQF 302 (437)
T ss_dssp EECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCC
T ss_pred hhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccccC
Confidence 876533333334568999999999987 567899999999999999999999999854322222222111111111
Q ss_pred CCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCC--CCCHHHHHHHHHHh
Q 001274 1029 PTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLN--RPTMREVIAMMIDA 1080 (1109)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~--RPt~~evl~~L~~~ 1080 (1109)
|. . .......+.+++.+|+..+|++ ||+++|+++|-+..
T Consensus 303 p~--~-----------~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~Hpff~ 343 (437)
T 4aw2_A 303 PT--Q-----------VTDVSENAKDLIRRLICSREHRLGQNGIEDFKKHPFFS 343 (437)
T ss_dssp CS--S-----------CCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTSGGGT
T ss_pred Cc--c-----------cccCCHHHHHHHHHHhcccccccCCCCHHHHhCCCccC
Confidence 10 0 0011235678999999988888 99999999986653
No 89
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=1.6e-38 Score=360.88 Aligned_cols=261 Identities=18% Similarity=0.240 Sum_probs=211.0
Q ss_pred cCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.+.||+|+||+||+|+. .+++.||||++.... ..+.+.+|+++++++ +||||+++++++...+..++||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~ 84 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS----RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVL 84 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC----SSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEE
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc----chHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEE
Confidence 5788999999999999999996 478999999987442 234688999999999 9999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCc-----eEEeeccccc
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQ-----AHVGDFGLAK 954 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~-----~kl~DFG~a~ 954 (1109)
||+ +++|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+++
T Consensus 85 e~~-~~~L~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~ 158 (330)
T 2izr_A 85 ELL-GPSLEDLFDLCDR--TFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK 158 (330)
T ss_dssp ECC-CCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCE
T ss_pred EeC-CCCHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEcccce
Confidence 999 9999999986533 3999999999999999999999 779999999999999998887 9999999998
Q ss_pred cccCCCCC------CccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccC
Q 001274 955 LIDLPYSK------SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMV 1028 (1109)
Q Consensus 955 ~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~ 1028 (1109)
........ ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+... ....+..........
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~-~~~~~~~~~i~~~~~ 237 (330)
T 2izr_A 159 EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA-DTLKERYQKIGDTKR 237 (330)
T ss_dssp ESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC-SSHHHHHHHHHHHHH
T ss_pred eeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCcccccc-ccHHHHHHHHHhhhc
Confidence 76433221 12456799999999999999999999999999999999999999987542 223222222111110
Q ss_pred C-CchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1029 P-TSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1029 ~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
+ ..+.. ..... .+.+++.+||+.||.+||++.+|.+.|.++....
T Consensus 238 ~~~~~~~----------~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~ 283 (330)
T 2izr_A 238 ATPIEVL----------CENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRK 283 (330)
T ss_dssp HSCHHHH----------TTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHH----------hccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence 0 00000 00011 6889999999999999999999999999886654
No 90
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.9e-38 Score=373.15 Aligned_cols=345 Identities=27% Similarity=0.395 Sum_probs=212.4
Q ss_pred cccccceecccccccCCCCCCccccccccceeeeeccceecCchhhhccCccceEEeecccccCccCcccCCCCcCcEEE
Q 001274 239 LRNLTDLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEID 318 (1109)
Q Consensus 239 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 318 (1109)
+++|+.|++++|.++ .+| .+..+++|++|+|++|.+++..| ++++++|++|++++|.+++..+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 344555555555554 233 24445555555555555553322 5555555555555555553333 55555555555
Q ss_pred ccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhcccccceEEcccccccc
Q 001274 319 LSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEG 398 (1109)
Q Consensus 319 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 398 (1109)
+++|++++..+ +..+++|+.|++++|.+.+. + .+..+++|++|+++ |.+.+.. .+.++++|+.|++++|.+++
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCC
Confidence 55555554322 45555555555555555542 2 35555666666664 3333222 25566666666666666553
Q ss_pred cCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccC
Q 001274 399 TIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYN 478 (1109)
Q Consensus 399 ~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 478 (1109)
. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|++++. +.+..+++|++|++++|++++..+ +.+
T Consensus 192 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 192 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 2 235556666666666666665444 55566666666666666643 345666677777777777765544 667
Q ss_pred CcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeee
Q 001274 479 LQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLD 558 (1109)
Q Consensus 479 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 558 (1109)
+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|+|++|++++..| +..+++|++|+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 7777777777777776533 6777777777777777776543 6777777777777777776554 66777788888
Q ss_pred cCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCccccc
Q 001274 559 LSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSG 614 (1109)
Q Consensus 559 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 614 (1109)
+++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 888877753 467777778888888888777766 7777788888888887775
No 91
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=4.9e-39 Score=364.13 Aligned_cols=276 Identities=23% Similarity=0.347 Sum_probs=197.0
Q ss_pred hcCCCCCceEecCCcceEEEEEecC-C---cEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCce-
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLAN-G---EVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSN- 875 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~~-~---~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 875 (1109)
.++|++.+.||+|+||+||+|++.. + ..||||+++.........+.+.+|++++++++||||+++++++...+..
T Consensus 22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 101 (323)
T 3qup_A 22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKG 101 (323)
T ss_dssp ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC----
T ss_pred hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccccc
Confidence 3689999999999999999998653 3 2799999976554555678899999999999999999999999887665
Q ss_pred -----EEEEEeccCCCHHHHhccCCC---CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEE
Q 001274 876 -----LLLYEYMENGSLGEQLHGNKQ---TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHV 947 (1109)
Q Consensus 876 -----~lv~e~~~~gsL~~~l~~~~~---~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl 947 (1109)
++||||+++|+|.+++..... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||
T Consensus 102 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~~kl 178 (323)
T 3qup_A 102 RLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTVCV 178 (323)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEE
T ss_pred CCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCCEEE
Confidence 899999999999999864321 124899999999999999999999 779999999999999999999999
Q ss_pred eeccccccccCCCC-CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhh
Q 001274 948 GDFGLAKLIDLPYS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIH 1025 (1109)
Q Consensus 948 ~DFG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~ 1025 (1109)
+|||+++....... .......+++.|+|||++.+..++.++||||+||++|||++ |+.||.+..... ....+..
T Consensus 179 ~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~-~~~~~~~--- 254 (323)
T 3qup_A 179 ADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAE-IYNYLIG--- 254 (323)
T ss_dssp CCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG-HHHHHHT---
T ss_pred eeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHH-HHHHHhc---
Confidence 99999986643222 22234457889999999999999999999999999999999 999998654322 2221111
Q ss_pred ccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCCCCCCCCcccc
Q 001274 1026 EMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSDYPSSPTSETP 1096 (1109)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~~~~~~~~~~ 1096 (1109)
..... ........+.+++.+||+.||++|||+.++++.++++.....-...++.+...
T Consensus 255 ~~~~~-------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~~~~~pl~~ 312 (323)
T 3qup_A 255 GNRLK-------------QPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLSTSQDPLYI 312 (323)
T ss_dssp TCCCC-------------CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-------------
T ss_pred CCCCC-------------CCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcCCCCCCCCC
Confidence 11000 01111235789999999999999999999999999998776555555444333
No 92
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-39 Score=364.72 Aligned_cols=254 Identities=24% Similarity=0.305 Sum_probs=206.2
Q ss_pred hcCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 878 (1109)
.++|++.+.||+|+||+||+|++ .+++.||||++..... .......+.+|+++++.++||||+++++++...+..++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 36899999999999999999996 4789999999964311 112245788999999999999999999999999999999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccC
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDL 958 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~ 958 (1109)
|||+ +|+|.+++..... +++.++..++.||+.|++||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 88 ~E~~-~g~l~~~l~~~~~---l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~ 160 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEKKR---MTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTD 160 (336)
T ss_dssp ECCC-CEEHHHHHHHHCS---CCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTT
T ss_pred EECC-CCcHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCEEEEEeccceeccC
Confidence 9999 7899999876543 899999999999999999999 67999999999999999999999999999986642
Q ss_pred CCCCCccccccccceeccccccCCCC-CccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhh
Q 001274 959 PYSKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKR 1037 (1109)
Q Consensus 959 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1109)
.......+||+.|+|||++.+..+ +.++||||+||++|+|++|+.||.+....... .... ...
T Consensus 161 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~--------~~i~------~~~ 224 (336)
T 3h4j_B 161 --GNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLF--------KKVN------SCV 224 (336)
T ss_dssp --SBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCB--------CCCC------SSC
T ss_pred --CcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHH--------HHHH------cCC
Confidence 223355679999999999998876 78999999999999999999999754311100 0000 000
Q ss_pred cchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1038 LDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
.. .+......+.+++.+||+.||.+|||++|++++-+...
T Consensus 225 ~~----~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~ 264 (336)
T 3h4j_B 225 YV----MPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWFNV 264 (336)
T ss_dssp CC----CCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTCHHHHT
T ss_pred CC----CcccCCHHHHHHHHHHcCCChhHCcCHHHHHhChhhcc
Confidence 00 01111235779999999999999999999999987654
No 93
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=2.6e-39 Score=375.20 Aligned_cols=263 Identities=21% Similarity=0.251 Sum_probs=210.1
Q ss_pred HHHHhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCc
Q 001274 797 LLEATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDS 874 (1109)
Q Consensus 797 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 874 (1109)
+....++|++.++||+|+||+||+|+++ +++.||+|+++.... .....+.+.+|+.+++.++||||+++++++.+.+.
T Consensus 64 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~ 143 (410)
T 3v8s_A 64 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRY 143 (410)
T ss_dssp HSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred cccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCE
Confidence 3345578999999999999999999976 589999999964211 11223458899999999999999999999999999
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
.|+||||+++|+|.+++.... +++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+
T Consensus 144 ~~lV~E~~~gg~L~~~l~~~~----~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFG~a~ 216 (410)
T 3v8s_A 144 LYMVMEYMPGGDLVNLMSNYD----VPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCM 216 (410)
T ss_dssp EEEEECCCTTEEHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred EEEEEeCCCCCcHHHHHHcCC----CCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEeccceeE
Confidence 999999999999999997642 899999999999999999999 7799999999999999999999999999998
Q ss_pred cccCCCCCCccccccccceeccccccCCC----CCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCC
Q 001274 955 LIDLPYSKSMSAIAGSYGYIAPEYAYTMK----VTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPT 1030 (1109)
Q Consensus 955 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1109)
.............+||+.|+|||++.+.. ++.++||||+||++|||++|+.||.+..........+........+.
T Consensus 217 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~ 296 (410)
T 3v8s_A 217 KMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPD 296 (410)
T ss_dssp ECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCT
T ss_pred eeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccCCC
Confidence 76533322334678999999999998765 78999999999999999999999985332211112111111111111
Q ss_pred chhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCC--CCCHHHHHHHHHHh
Q 001274 1031 SELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLN--RPTMREVIAMMIDA 1080 (1109)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~--RPt~~evl~~L~~~ 1080 (1109)
.. .....+.+++.+|++.+|.+ ||+++||++|-+..
T Consensus 297 ~~--------------~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp~f~ 334 (410)
T 3v8s_A 297 DN--------------DISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFK 334 (410)
T ss_dssp TC--------------CCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTSGGGC
T ss_pred cc--------------cccHHHHHHHHHHccChhhhCCCCCHHHHhcCcccc
Confidence 00 11235678999999999998 99999999997664
No 94
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=2.7e-39 Score=383.15 Aligned_cols=258 Identities=24% Similarity=0.408 Sum_probs=210.3
Q ss_pred hcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
.++|++.+.||+|+||+||+|++++++.||||+++.. ....+.+.+|++++++++||||+++++++. .+..++|||
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e 262 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG---SMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITE 262 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTT---SBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEC
T ss_pred hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCC---CccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEe
Confidence 4678888999999999999999988899999999743 234678999999999999999999999986 667899999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
|+++|+|.++++.... ..+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++......
T Consensus 263 ~~~~g~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~ 338 (454)
T 1qcf_A 263 FMAKGSLLDFLKSDEG-SKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE 338 (454)
T ss_dssp CCTTCBHHHHHHSHHH-HTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHH
T ss_pred ecCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCc
Confidence 9999999999975432 13789999999999999999999 7799999999999999999999999999998764322
Q ss_pred CCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 961 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
........+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+.... .....+...... +.
T Consensus 339 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~-~~~~~i~~~~~~--~~--------- 406 (454)
T 1qcf_A 339 YTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP-EVIRALERGYRM--PR--------- 406 (454)
T ss_dssp HHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-HHHHHHHHTCCC--CC---------
T ss_pred eeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHH-HHHHHHHcCCCC--CC---------
Confidence 222234457889999999999999999999999999999999 99999854321 111222211110 00
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
.......+.+++.+||+.||++||||.+|++.|+.....
T Consensus 407 -----~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~ 445 (454)
T 1qcf_A 407 -----PENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA 445 (454)
T ss_dssp -----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred -----CCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence 111224578999999999999999999999999887654
No 95
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=5.2e-39 Score=366.58 Aligned_cols=254 Identities=23% Similarity=0.292 Sum_probs=204.0
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNLL 877 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 877 (1109)
.++|++.++||+|+||+||+|+++ +++.||||+++.... .....+.+.+|.++++.+ +||||+++++++...+..|+
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 468999999999999999999975 689999999974311 122345678999999988 79999999999999999999
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
||||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+...
T Consensus 102 v~E~~~gg~L~~~l~~~~~---~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~ 175 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQKSRR---FDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI 175 (353)
T ss_dssp EEECCCSCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred EEeCCCCCcHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEccccceeecc
Confidence 9999999999999976543 899999999999999999999 7799999999999999999999999999998543
Q ss_pred CCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhh
Q 001274 958 LPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKR 1037 (1109)
Q Consensus 958 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1109)
. ........+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.. ..+...............
T Consensus 176 ~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~----~~~~~~~i~~~~~~~p~~---- 246 (353)
T 3txo_A 176 C-NGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAEN----EDDLFEAILNDEVVYPTW---- 246 (353)
T ss_dssp C----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCCCCCCTT----
T ss_pred c-CCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCC----HHHHHHHHHcCCCCCCCC----
Confidence 1 2233455689999999999999999999999999999999999999997532 233333333322211111
Q ss_pred cchhhcccHHHHHHHHHHHHhccCCCCCCCCCH------HHHHHHHHH
Q 001274 1038 LDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTM------REVIAMMID 1079 (1109)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~------~evl~~L~~ 1079 (1109)
....+.+++.+|++.||++||++ .|+++|-+.
T Consensus 247 ----------~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~hp~f 284 (353)
T 3txo_A 247 ----------LHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFF 284 (353)
T ss_dssp ----------SCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTSGGG
T ss_pred ----------CCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhCCcc
Confidence 11346789999999999999999 888877543
No 96
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=1e-38 Score=360.19 Aligned_cols=274 Identities=23% Similarity=0.361 Sum_probs=195.9
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.+.||+|+||+||+|++. +++.||+|+++... .....+.+.+|++++++++||||+++++++..++..++||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 82 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDS-EEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVF 82 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCS-TTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccc-ccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEE
Confidence 468999999999999999999865 68999999997543 2234467889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCC---CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 880 EYMENGSLGEQLHGNK---QTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
||++ |+|.+++.... ....+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 83 e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 158 (317)
T 2pmi_A 83 EFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAF 158 (317)
T ss_dssp ECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCEET
T ss_pred EecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccceec
Confidence 9997 59999886432 1124899999999999999999999 779999999999999999999999999999876
Q ss_pred cCCCCCCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhh
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFD 1035 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1109)
... ........+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+............. ... +....+.
T Consensus 159 ~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~-~~~--~~~~~~~ 234 (317)
T 2pmi_A 159 GIP-VNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDI-MGT--PNESLWP 234 (317)
T ss_dssp TSC-CCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHH-HCS--CCTTTCG
T ss_pred CCC-cccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH-hCC--CChhHhh
Confidence 522 222345578999999999876 46899999999999999999999999864322222111111 110 0000000
Q ss_pred h---------hcch----------hhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1036 K---------RLDL----------SAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1036 ~---------~~~~----------~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
. .... ...........+.+++.+||+.||++|||++|++++-+.....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~ 301 (317)
T 2pmi_A 235 SVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFAEYY 301 (317)
T ss_dssp GGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGC
T ss_pred hhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCChhhhccc
Confidence 0 0000 0000001224688999999999999999999999986655433
No 97
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.2e-38 Score=350.43 Aligned_cols=257 Identities=25% Similarity=0.412 Sum_probs=211.9
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEEe
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEY 881 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 881 (1109)
++|++.+.||+|+||.||+|++.+++.||+|++.... ...+.+.+|++++++++||||+++++++...+..++||||
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 84 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA---MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEF 84 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTT---BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECC
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccC---CCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeC
Confidence 5788889999999999999999888999999997432 2346789999999999999999999999999999999999
Q ss_pred ccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCCC
Q 001274 882 MENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPYS 961 (1109)
Q Consensus 882 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~ 961 (1109)
+++++|.+++..... .+++..+..++.|++.|++||| +.+++||||||+||+++.++.+||+|||.++.......
T Consensus 85 ~~~~~L~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~ 159 (267)
T 3t9t_A 85 MEHGCLSDYLRTQRG--LFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY 159 (267)
T ss_dssp CTTCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred CCCCcHHHHHhhCcc--cCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEcccccccccccccc
Confidence 999999999987543 3899999999999999999999 77999999999999999999999999999986643222
Q ss_pred CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcch
Q 001274 962 KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDL 1040 (1109)
Q Consensus 962 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1109)
.......++..|+|||++.+..++.++||||+|+++|||++ |+.||.... ..+.............
T Consensus 160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~----~~~~~~~i~~~~~~~~--------- 226 (267)
T 3t9t_A 160 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS----NSEVVEDISTGFRLYK--------- 226 (267)
T ss_dssp HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC----HHHHHHHHHTTCCCCC---------
T ss_pred cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCC----HHHHHHHHhcCCcCCC---------
Confidence 22334567889999999998999999999999999999999 899997532 2222222211111000
Q ss_pred hhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1041 SAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1041 ~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
.......+.+++.+||+.||++||++++++++|.++..+
T Consensus 227 ----~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 227 ----PRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp ----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ----CccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 001123577999999999999999999999999988653
No 98
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=1.8e-38 Score=357.20 Aligned_cols=259 Identities=22% Similarity=0.307 Sum_probs=199.2
Q ss_pred cCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCC-cchhHHHHHHHHHhccCCCCceeeEEEEEEeCCce----
Q 001274 802 GNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEG-ATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSN---- 875 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 875 (1109)
++|++.+.||+|+||+||+|++ .+++.||||+++..... ......+.+|++++++++||||+++++++......
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 91 (311)
T 3ork_A 12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP 91 (311)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCccc
Confidence 6899999999999999999996 47899999999754322 23346788999999999999999999998876544
Q ss_pred EEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccc
Q 001274 876 LLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~ 955 (1109)
++||||+++++|.+++..... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 92 ~lv~e~~~g~~L~~~l~~~~~---~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~ 165 (311)
T 3ork_A 92 YIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARA 165 (311)
T ss_dssp EEEEECCCEEEHHHHHHHHCS---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSCC--
T ss_pred EEEEecCCCCCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccCccc
Confidence 999999999999999976543 899999999999999999999 77999999999999999999999999999986
Q ss_pred ccCCCC--CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchh
Q 001274 956 IDLPYS--KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSEL 1033 (1109)
Q Consensus 956 ~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1109)
...... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||.+.. ..................
T Consensus 166 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~----~~~~~~~~~~~~~~~~~~ 241 (311)
T 3ork_A 166 IADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS----PVSVAYQHVREDPIPPSA 241 (311)
T ss_dssp ----------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS----HHHHHHHHHHCCCCCHHH
T ss_pred ccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC----hHHHHHHHhcCCCCCccc
Confidence 643222 12234568999999999999999999999999999999999999997533 222222222222111111
Q ss_pred hhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1034 FDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
.. ......+.+++.+||+.||++||++.+++.+-...
T Consensus 242 ~~----------~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~ 278 (311)
T 3ork_A 242 RH----------EGLSADLDAVVLKALAKNPENRYQTAAEMRADLVR 278 (311)
T ss_dssp HS----------TTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred cc----------CCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHH
Confidence 10 11123577999999999999999877777654443
No 99
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=2.4e-38 Score=364.98 Aligned_cols=258 Identities=20% Similarity=0.256 Sum_probs=206.2
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCC-cchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEG-ATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNLL 877 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 877 (1109)
.++|++.++||+|+||+||+|+.+ +++.||+|+++..... ....+.+.+|..+++++ +||||+++++++...+..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 357899999999999999999976 5889999999754322 23345688899999877 89999999999999999999
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
||||+++|+|..++..... +++..++.++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+...
T Consensus 131 V~E~~~gg~L~~~l~~~~~---l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~ 204 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQRK---LPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL 204 (396)
T ss_dssp EEECCTTCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEcCCCCcHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceeeecc
Confidence 9999999999999986543 899999999999999999999 7799999999999999999999999999998533
Q ss_pred CCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCC----cHHH-HHHHhhhccCCCch
Q 001274 958 LPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGG----DLVT-WVRRSIHEMVPTSE 1032 (1109)
Q Consensus 958 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~----~~~~-~~~~~~~~~~~~~~ 1032 (1109)
. ........+||+.|+|||++.+..++.++||||+||++|||++|+.||....... ...+ .............
T Consensus 205 ~-~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p- 282 (396)
T 4dc2_A 205 R-PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIP- 282 (396)
T ss_dssp C-TTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCC-
T ss_pred c-CCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCC-
Confidence 2 2233456789999999999999999999999999999999999999997543111 1111 1122222211111
Q ss_pred hhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCH------HHHHHHHHH
Q 001274 1033 LFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTM------REVIAMMID 1079 (1109)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~------~evl~~L~~ 1079 (1109)
......+.+++.+||+.||++||++ +|++++-+.
T Consensus 283 -------------~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpff 322 (396)
T 4dc2_A 283 -------------RSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFF 322 (396)
T ss_dssp -------------TTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTTT
T ss_pred -------------CcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCccc
Confidence 1112356799999999999999985 788877543
No 100
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=1.1e-38 Score=351.32 Aligned_cols=254 Identities=21% Similarity=0.332 Sum_probs=208.2
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeC--CceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQ--DSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ 879 (1109)
++|++.+.||+|+||+||+|+++ ++.||||+++.........+.+.+|++++++++||||+++++++... +..++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT 88 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence 57889999999999999999986 88999999987655556667899999999999999999999999887 6789999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCC--eEecCCCCCceeeCCCCceEEeecccccccc
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPH--IIHRDIKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
||+++|+|.+++..... ..+++..+..++.|++.||+||| +.+ |+||||||+||+++.++.++|+|||++....
T Consensus 89 e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~ 164 (271)
T 3kmu_A 89 HWMPYGSLYNVLHEGTN-FVVDQSQAVKFALDMARGMAFLH---TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ 164 (271)
T ss_dssp ECCTTCBHHHHHHSCSS-CCCCHHHHHHHHHHHHHHHHHHT---TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS
T ss_pred cccCCCcHHHHHhhccc-CCCCHHHHHHHHHHHHHHHHHHh---cCCCceecCCCccceEEEcCCcceeEEeccceeeec
Confidence 99999999999987543 24899999999999999999999 667 9999999999999999999999999876432
Q ss_pred CCCCCCccccccccceeccccccCCCCCc---cchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhh
Q 001274 958 LPYSKSMSAIAGSYGYIAPEYAYTMKVTE---KCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELF 1034 (1109)
Q Consensus 958 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1109)
.....+|+.|+|||++.+..++. ++||||+|+++|||++|+.||..... .+............ ..
T Consensus 165 ------~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~----~~~~~~~~~~~~~~--~~ 232 (271)
T 3kmu_A 165 ------SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSN----MEIGMKVALEGLRP--TI 232 (271)
T ss_dssp ------CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCH----HHHHHHHHHSCCCC--CC
T ss_pred ------ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccCh----HHHHHHHHhcCCCC--CC
Confidence 22346899999999998766544 89999999999999999999975432 22222222111110 00
Q ss_pred hhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhh
Q 001274 1035 DKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQ 1082 (1109)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 1082 (1109)
.......+.+++.+||+.||++|||++|+++.|..+..
T Consensus 233 ----------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 233 ----------PPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp ----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred ----------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 01112357899999999999999999999999998754
No 101
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=3.1e-38 Score=355.12 Aligned_cols=250 Identities=22% Similarity=0.271 Sum_probs=207.9
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.+.||+|+||+||+|+.. +|+.||+|+++.... .....+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~ 85 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 85 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence 57889999999999999999975 699999999974321 1123466789999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 86 e~~~gg~L~~~l~~~~~---~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~- 158 (318)
T 1fot_A 86 DYIEGGELFSLLRKSQR---FPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPD- 158 (318)
T ss_dssp CCCCSCBHHHHHHHTSS---CCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSS-
T ss_pred eCCCCCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecCC-
Confidence 99999999999987543 899999999999999999999 88999999999999999999999999999986542
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
.....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.. .................
T Consensus 159 ---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~----~~~~~~~i~~~~~~~p~------- 224 (318)
T 1fot_A 159 ---VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN----TMKTYEKILNAELRFPP------- 224 (318)
T ss_dssp ---CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHHCCCCCCT-------
T ss_pred ---ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC----HHHHHHHHHhCCCCCCC-------
Confidence 2345679999999999999999999999999999999999999997532 22223332222221111
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHHHHH
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRP-----TMREVIAMMID 1079 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RP-----t~~evl~~L~~ 1079 (1109)
.....+.+++.+|++.||++|| +++|+++|-+.
T Consensus 225 -------~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~hp~f 262 (318)
T 1fot_A 225 -------FFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWF 262 (318)
T ss_dssp -------TSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGG
T ss_pred -------CCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcCccc
Confidence 1113577999999999999999 89999987543
No 102
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=363.34 Aligned_cols=254 Identities=21% Similarity=0.302 Sum_probs=207.1
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccC-CCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRG-EGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.+.||+|+||+||+|+.. +++.||+|++.... ......+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 57899999999999999999865 68899999996432 11223467889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 95 e~~~gg~L~~~l~~~~~---l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~- 167 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQNVH---FKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPR- 167 (384)
T ss_dssp CCCTTEEHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT-
T ss_pred ecCCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeeccC-
Confidence 99999999999987543 899999999999999999999 77999999999999999999999999999987642
Q ss_pred CCCCccccccccceeccccccC---CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYT---MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK 1036 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1109)
.......+||+.|+|||++.+ ..++.++||||+||++|||++|+.||..... ...................
T Consensus 168 -~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~-~~~~~~~~~~~~~~~~~p~---- 241 (384)
T 4fr4_A 168 -ETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSS-TSSKEIVHTFETTVVTYPS---- 241 (384)
T ss_dssp -TCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTT-SCHHHHHHHHHHCCCCCCT----
T ss_pred -CCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCC-ccHHHHHHHHhhcccCCCC----
Confidence 233456789999999999874 4589999999999999999999999975432 2223333322222211111
Q ss_pred hcchhhcccHHHHHHHHHHHHhccCCCCCCCCC-HHHHHHHHH
Q 001274 1037 RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPT-MREVIAMMI 1078 (1109)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt-~~evl~~L~ 1078 (1109)
.....+.+++.+||+.||++||+ ++++.++-+
T Consensus 242 ----------~~s~~~~~li~~lL~~dP~~R~s~~~~l~~hp~ 274 (384)
T 4fr4_A 242 ----------AWSQEMVSLLKKLLEPNPDQRFSQLSDVQNFPY 274 (384)
T ss_dssp ----------TSCHHHHHHHHHHSCSSGGGSCCSHHHHHTSGG
T ss_pred ----------cCCHHHHHHHHHHhcCCHhHhcccHHHHHcChh
Confidence 11235779999999999999999 788876543
No 103
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.5e-37 Score=370.16 Aligned_cols=346 Identities=29% Similarity=0.409 Sum_probs=166.8
Q ss_pred ccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccccccCCCCccccccccchhh
Q 001274 142 FINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVL 221 (1109)
Q Consensus 142 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 221 (1109)
.+++++.|++++|.+.. +| .+..+++|++|+|++|.+++..| ++++++|++|++++|.+++..+ +++
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~------- 110 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LAN------- 110 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTT-------
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcC-------
Confidence 35566666666666543 33 25556666666666666654322 5555555555555555553322 444
Q ss_pred hcccccccccCchhhhccccccceecccccccCCCCCCccccccccceeeeeccceecCchhhhccCccceEEeeccccc
Q 001274 222 GLAQNSLEGFLPSELEKLRNLTDLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELN 301 (1109)
Q Consensus 222 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 301 (1109)
+++|++|+|++|++++..+ +.++++|++|++++|.+++ ++ .++++++|++|+++ |.+.
T Consensus 111 -----------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~ 168 (466)
T 1o6v_A 111 -----------------LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVT 168 (466)
T ss_dssp -----------------CTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCC
T ss_pred -----------------CCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-Cccc
Confidence 4444444554444443221 4455555555555555543 22 35555555555554 3333
Q ss_pred CccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchh
Q 001274 302 GTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQ 381 (1109)
Q Consensus 302 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 381 (1109)
+.. .+.++++|++|++++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|++|++++|++++. ..+.
T Consensus 169 ~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~ 240 (466)
T 1o6v_A 169 DLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLA 240 (466)
T ss_dssp CCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred Cch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhh
Confidence 221 255555555666655555532 123444444444444444443333 44455555555555555432 2344
Q ss_pred cccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCcccccccee
Q 001274 382 NLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQL 461 (1109)
Q Consensus 382 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 461 (1109)
.+++|+.|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|+++
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~---------------- 300 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE---------------- 300 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS----------------
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc----------------
Confidence 44455555555554443322 3444444444444444443322 344444444444444444
Q ss_pred ecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCccc
Q 001274 462 MLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLS 541 (1109)
Q Consensus 462 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 541 (1109)
+..+ +..+++|++|+|++|++++..| +..+++|++|++++|++++. ..+.++++|+.|++++|+++
T Consensus 301 --------~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 301 --------DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp --------CCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred --------Cchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence 3222 3444445555555555444332 44445555555555555443 24445555555555555555
Q ss_pred ccCCcCCCCCCCCCeeecCCCcCcc
Q 001274 542 GTIPHELGNCVNLQRLDLSRNQFTG 566 (1109)
Q Consensus 542 ~~~p~~~~~l~~L~~L~Ls~N~l~~ 566 (1109)
+..| +..+++|+.|++++|.+++
T Consensus 367 ~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 367 DLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp BCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ccch--hhcCCCCCEEeccCCcccC
Confidence 4443 4455555555555555543
No 104
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=3e-38 Score=350.69 Aligned_cols=259 Identities=21% Similarity=0.261 Sum_probs=212.0
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.+.||+|+||+||+|++. +++.||+|++..........+.+.+|++++++++||||+++++++...+..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 368999999999999999999875 6899999999866555556678899999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCc---eEEeeccccccc
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQ---AHVGDFGLAKLI 956 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~---~kl~DFG~a~~~ 956 (1109)
||+++++|.+++..... +++..+..++.|++.|++||| +.+|+||||||+||+++.++. +||+|||.+...
T Consensus 85 e~~~~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~ 158 (284)
T 3kk8_A 85 DLVTGGELFEDIVAREF---YSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV 158 (284)
T ss_dssp CCCCSCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred ecCCCCCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEc
Confidence 99999999998876543 899999999999999999999 779999999999999986655 999999999866
Q ss_pred cCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK 1036 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1109)
.. ........||+.|+|||++.+..++.++||||+|+++|+|++|+.||.... ...................
T Consensus 159 ~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~----~~~~~~~~~~~~~~~~~~~-- 230 (284)
T 3kk8_A 159 ND--SEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED----QHRLYAQIKAGAYDYPSPE-- 230 (284)
T ss_dssp CS--SCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHTCCCCCTTT--
T ss_pred cc--CccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCc----hhHHHHHHHhccccCCchh--
Confidence 52 223345679999999999999999999999999999999999999997532 2222222222211111000
Q ss_pred hcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1037 RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
.......+.+++.+||+.||++|||++|++++-+-..
T Consensus 231 --------~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~ 267 (284)
T 3kk8_A 231 --------WDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICN 267 (284)
T ss_dssp --------TTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTSHHHHS
T ss_pred --------hcccCHHHHHHHHHHcccChhhCCCHHHHhcCccccC
Confidence 0011235779999999999999999999999876544
No 105
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=1.6e-38 Score=360.06 Aligned_cols=259 Identities=24% Similarity=0.391 Sum_probs=204.2
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcE----EEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEV----IAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~----vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 876 (1109)
++|++.+.||+|+||+||+|++. +++. ||+|.+.... .......+.+|+.++++++||||+++++++. ++..+
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~ 90 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKS-GRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQ 90 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTT-SCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccc-cHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccE
Confidence 57888999999999999999864 4443 7788775332 2234456789999999999999999999886 56689
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
+||||+++|+|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 91 ~v~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~ 165 (325)
T 3kex_A 91 LVTQYLPLGSLLDHVRQHRG--ALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLL 165 (325)
T ss_dssp EEEECCTTCBSHHHHHSSGG--GSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGGS
T ss_pred EEEEeCCCCCHHHHHHHccc--cCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCccccc
Confidence 99999999999999987543 3899999999999999999999 779999999999999999999999999999876
Q ss_pred cCCCCC-CccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhh
Q 001274 957 DLPYSK-SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELF 1034 (1109)
Q Consensus 957 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1109)
...... ......+|..|+|||++.+..++.++||||+||++|||++ |+.||.+... ......+....... ....
T Consensus 166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~-~~~~~~~~~~~~~~--~~~~- 241 (325)
T 3kex_A 166 PPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRL-AEVPDLLEKGERLA--QPQI- 241 (325)
T ss_dssp CCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCT-THHHHHHHTTCBCC--CCTT-
T ss_pred CcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCH-HHHHHHHHcCCCCC--CCCc-
Confidence 533222 2345567889999999999999999999999999999999 9999986432 22222222211111 1111
Q ss_pred hhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1035 DKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
....+.+++.+||+.||++||++++++++|..+....
T Consensus 242 -------------~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~~ 278 (325)
T 3kex_A 242 -------------CTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARDP 278 (325)
T ss_dssp -------------BCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTSH
T ss_pred -------------CcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence 1123568999999999999999999999999886543
No 106
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=9.3e-39 Score=367.91 Aligned_cols=274 Identities=16% Similarity=0.223 Sum_probs=210.2
Q ss_pred hcCCCCCceEecCCcceEEEEEecC------CcEEEEEEeeccCCCcc---------hhHHHHHHHHHhccCCCCceeeE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLAN------GEVIAVKKIKLRGEGAT---------ADNSFLAEISTLGKIRHRNIVKL 865 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~~------~~~vavK~~~~~~~~~~---------~~~~~~~E~~~l~~l~h~niv~l 865 (1109)
.++|++.++||+|+||+||+|++.. ++.||||++........ ....+..|+..++.++|+||+++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 3589999999999999999998754 47899999874321100 11234456667788899999999
Q ss_pred EEEEEeC----CceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeC-
Q 001274 866 YGFCYHQ----DSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLD- 940 (1109)
Q Consensus 866 ~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~- 940 (1109)
++++... ...++||||+ +++|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+||+++
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~--~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~Nill~~ 187 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAK--RFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASNLLLNY 187 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEES
T ss_pred EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHHEEEec
Confidence 9998775 4479999999 9999999987543 3999999999999999999999 77999999999999998
Q ss_pred -CCCceEEeeccccccccCCCCC------CccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccC
Q 001274 941 -EEFQAHVGDFGLAKLIDLPYSK------SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELG 1013 (1109)
Q Consensus 941 -~~~~~kl~DFG~a~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~ 1013 (1109)
.++.+||+|||+++........ ......||+.|+|||++.+..++.++|||||||++|||+||+.||.+....
T Consensus 188 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~ 267 (364)
T 3op5_A 188 KNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD 267 (364)
T ss_dssp SCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC
T ss_pred CCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC
Confidence 8899999999999866422111 113456999999999999999999999999999999999999999864433
Q ss_pred CcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCCC
Q 001274 1014 GDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSDY 1087 (1109)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~ 1087 (1109)
.............. ..+..++.+.. ......+.+++..||+.||++||++.++++.|+.+.......
T Consensus 268 ~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~~~ 334 (364)
T 3op5_A 268 PKYVRDSKIRYREN--IASLMDKCFPA-----ANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSK 334 (364)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHHSCT-----TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhhh--HHHHHHHhccc-----ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 33333333322221 22222222110 111346789999999999999999999999999988765433
No 107
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=2.9e-38 Score=359.17 Aligned_cols=254 Identities=23% Similarity=0.333 Sum_probs=202.7
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCc-----
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDS----- 874 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 874 (1109)
.++|++.+.||+|+||+||+|++. +++.||||+++... .....+.+.+|++++++++||||+++++++.+...
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 83 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPN-RELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE 83 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCS-TTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCC-chhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence 357889999999999999999976 79999999997543 33455789999999999999999999999866542
Q ss_pred ----------------------------------------------------eEEEEEeccCCCHHHHhccCCCCCCCCh
Q 001274 875 ----------------------------------------------------NLLLYEYMENGSLGEQLHGNKQTCLLDW 902 (1109)
Q Consensus 875 ----------------------------------------------------~~lv~e~~~~gsL~~~l~~~~~~~~l~~ 902 (1109)
.++||||+++|+|.+++.........++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~ 163 (332)
T 3qd2_B 84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREH 163 (332)
T ss_dssp HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCH
T ss_pred hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhh
Confidence 7899999999999999988766555777
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCCC-----------CCcccccccc
Q 001274 903 DARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPYS-----------KSMSAIAGSY 971 (1109)
Q Consensus 903 ~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~-----------~~~~~~~gt~ 971 (1109)
..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++....... .......||+
T Consensus 164 ~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 240 (332)
T 3qd2_B 164 GVCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK 240 (332)
T ss_dssp HHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CG
T ss_pred HHHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCc
Confidence 789999999999999999 77999999999999999999999999999987653321 1224457999
Q ss_pred ceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHH
Q 001274 972 GYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTL 1051 (1109)
Q Consensus 972 ~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1109)
.|+|||++.+..++.++||||+||++|||++|..|+... ............ ... .......
T Consensus 241 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~------~~~~~~~~~~~~--~~~-----------~~~~~~~ 301 (332)
T 3qd2_B 241 LYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER------VRIITDVRNLKF--PLL-----------FTQKYPQ 301 (332)
T ss_dssp GGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH------HHHHHHHHTTCC--CHH-----------HHHHCHH
T ss_pred CccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH------HHHHHHhhccCC--Ccc-----------cccCChh
Confidence 999999999999999999999999999999988775321 111111111111 100 1222345
Q ss_pred HHHHHHhccCCCCCCCCCHHHHHHHH
Q 001274 1052 FLKIALFCSSTSPLNRPTMREVIAMM 1077 (1109)
Q Consensus 1052 ~~~li~~cl~~dP~~RPt~~evl~~L 1077 (1109)
+.+++.+||+.||++|||++|++++-
T Consensus 302 ~~~li~~~l~~~p~~Rps~~~~l~~~ 327 (332)
T 3qd2_B 302 EHMMVQDMLSPSPTERPEATDIIENA 327 (332)
T ss_dssp HHHHHHHHHCSSGGGSCCHHHHHHST
T ss_pred HHHHHHHHccCCCCcCCCHHHHhhch
Confidence 67899999999999999999999763
No 108
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=2.2e-38 Score=362.37 Aligned_cols=260 Identities=19% Similarity=0.235 Sum_probs=207.2
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccC---CCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRG---EGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLL 877 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 877 (1109)
++|++.+.||+|+||+||+|++. +++.||||++.... ......+.+.+|+++++.++||||+++++++...+..++
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 103 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM 103 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 57889999999999999999865 68999999986431 122245678999999999999999999999999999999
Q ss_pred EEEeccCCCHHHHhccCC-CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCc---eEEeecccc
Q 001274 878 LYEYMENGSLGEQLHGNK-QTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQ---AHVGDFGLA 953 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~---~kl~DFG~a 953 (1109)
||||+++|+|.+++.... ....+++..+..++.||+.||+||| +.+|+||||||+||+++.++. +||+|||++
T Consensus 104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a 180 (351)
T 3c0i_A 104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVA 180 (351)
T ss_dssp EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCcce
Confidence 999999999988875432 1223899999999999999999999 779999999999999986654 999999999
Q ss_pred ccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchh
Q 001274 954 KLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSEL 1033 (1109)
Q Consensus 954 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1109)
+..... ........||+.|+|||++.+..++.++||||+||++|||++|+.||.+.. .+...............
T Consensus 181 ~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~-----~~~~~~i~~~~~~~~~~ 254 (351)
T 3c0i_A 181 IQLGES-GLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK-----ERLFEGIIKGKYKMNPR 254 (351)
T ss_dssp EECCTT-SCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH-----HHHHHHHHHTCCCCCHH
T ss_pred eEecCC-CeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH-----HHHHHHHHcCCCCCCcc
Confidence 876532 222345679999999999999999999999999999999999999997532 12222222222111110
Q ss_pred hhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1034 FDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
.. ......+.+++.+||+.||++|||+.|++++-+..
T Consensus 255 ~~----------~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~ 291 (351)
T 3c0i_A 255 QW----------SHISESAKDLVRRMLMLDPAERITVYEALNHPWLK 291 (351)
T ss_dssp HH----------TTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHH
T ss_pred cc----------ccCCHHHHHHHHHHCCCChhHCcCHHHHhcChhhc
Confidence 00 01123577999999999999999999999875543
No 109
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=1.4e-38 Score=352.69 Aligned_cols=258 Identities=24% Similarity=0.365 Sum_probs=197.5
Q ss_pred cCCCCCceEecCCcceEEEEEecC----CcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLAN----GEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLL 877 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 877 (1109)
++|++.+.||+|+||+||+|++.. +..||+|+++.. ......+.+.+|+.++++++||||+++++++. ++..++
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~l 92 (281)
T 1mp8_A 15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC-TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI 92 (281)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTT-TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEecccc-CCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEE
Confidence 678899999999999999998642 457999988643 23344567899999999999999999999974 567899
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
||||+++|+|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 93 v~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 167 (281)
T 1mp8_A 93 IMELCTLGELRSFLQVRKY--SLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 167 (281)
T ss_dssp EEECCTTEEHHHHHHHTTT--TSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC--------
T ss_pred EEecCCCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECccccccccC
Confidence 9999999999999986543 3899999999999999999999 7799999999999999999999999999998765
Q ss_pred CCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh
Q 001274 958 LPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK 1036 (1109)
Q Consensus 958 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1109)
...........+|+.|+|||++.+..++.++||||+|+++|||++ |..||.+.... .....+.... ..+.
T Consensus 168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~-~~~~~i~~~~--~~~~------ 238 (281)
T 1mp8_A 168 DSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN-DVIGRIENGE--RLPM------ 238 (281)
T ss_dssp -----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG-GHHHHHHTTC--CCCC------
T ss_pred cccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHH-HHHHHHHcCC--CCCC------
Confidence 333333344567889999999999999999999999999999997 99999865422 2222222110 0110
Q ss_pred hcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1037 RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
.......+.+++.+||+.||++|||+.|++++|+.+...
T Consensus 239 --------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 277 (281)
T 1mp8_A 239 --------PPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 277 (281)
T ss_dssp --------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --------CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 111224577999999999999999999999999988654
No 110
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=9.2e-39 Score=365.32 Aligned_cols=266 Identities=23% Similarity=0.384 Sum_probs=211.4
Q ss_pred HhcCCCCCceEecCCcceEEEEEe------cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeC
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATL------ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQ 872 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 872 (1109)
..++|++.+.||+|+||+||+|++ .+++.||||+++... .....+.+.+|+++++++ +||||+++++++...
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 121 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA-DSSEREALMSELKMMTQLGSHENIVNLLGACTLS 121 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc-CHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeC
Confidence 346889999999999999999986 246689999997432 233457899999999999 899999999999999
Q ss_pred CceEEEEEeccCCCHHHHhccCCCC--------------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCC
Q 001274 873 DSNLLLYEYMENGSLGEQLHGNKQT--------------------CLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDI 932 (1109)
Q Consensus 873 ~~~~lv~e~~~~gsL~~~l~~~~~~--------------------~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dl 932 (1109)
+..++||||+++|+|.+++...... ..+++..+..++.||+.||+||| +.+|+||||
T Consensus 122 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Di 198 (344)
T 1rjb_A 122 GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDL 198 (344)
T ss_dssp SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTC
T ss_pred CccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCC
Confidence 9999999999999999999765431 23789999999999999999999 779999999
Q ss_pred CCCceeeCCCCceEEeeccccccccCCCCC-CccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCc
Q 001274 933 KSNNILLDEEFQAHVGDFGLAKLIDLPYSK-SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSL 1010 (1109)
Q Consensus 933 kp~NIll~~~~~~kl~DFG~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~ 1010 (1109)
||+||+++.++.+||+|||+++........ ......+|+.|+|||++.+..++.++||||||+++|||+| |..||.+.
T Consensus 199 kp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~ 278 (344)
T 1rjb_A 199 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI 278 (344)
T ss_dssp SGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred ChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccC
Confidence 999999999999999999999866532221 1234567889999999999999999999999999999998 99999865
Q ss_pred ccCCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccC
Q 001274 1011 ELGGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVS 1085 (1109)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~ 1085 (1109)
.........+........+ ......+.+++.+||+.||++|||+.+++++|+.......
T Consensus 279 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~ 337 (344)
T 1rjb_A 279 PVDANFYKLIQNGFKMDQP----------------FYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAE 337 (344)
T ss_dssp CCSHHHHHHHHTTCCCCCC----------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC----
T ss_pred CcHHHHHHHHhcCCCCCCC----------------CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHH
Confidence 4433333333322111110 1112357899999999999999999999999999876554
No 111
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=1.3e-38 Score=354.35 Aligned_cols=261 Identities=29% Similarity=0.457 Sum_probs=200.2
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEEe
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEY 881 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 881 (1109)
++|++.++||+|+||+||+|++. ..||||+++.........+.+.+|++++++++||||+++++++ ..+..++||||
T Consensus 24 ~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e~ 100 (289)
T 3og7_A 24 GQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQW 100 (289)
T ss_dssp TSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEEC
T ss_pred cceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEEe
Confidence 68999999999999999999875 3599999987666656667899999999999999999999965 55678999999
Q ss_pred ccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC-
Q 001274 882 MENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY- 960 (1109)
Q Consensus 882 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~- 960 (1109)
+++++|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 101 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 175 (289)
T 3og7_A 101 CEGSSLYHHLHASET--KFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG 175 (289)
T ss_dssp CCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC----------
T ss_pred cCCCcHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceeccccccccc
Confidence 999999999976543 3899999999999999999999 7799999999999999999999999999998654211
Q ss_pred CCCccccccccceecccccc---CCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhh
Q 001274 961 SKSMSAIAGSYGYIAPEYAY---TMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKR 1037 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1109)
........||+.|+|||++. +..++.++||||+|+++|||++|+.||............+....... .....
T Consensus 176 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~---- 250 (289)
T 3og7_A 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSP-DLSKV---- 250 (289)
T ss_dssp --------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCC-CTTSS----
T ss_pred cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCc-chhhc----
Confidence 22234567899999999986 66789999999999999999999999986543222222222211110 00000
Q ss_pred cchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhh
Q 001274 1038 LDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQ 1082 (1109)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 1082 (1109)
.......+.+++.+||+.||++|||++++++.|+++..
T Consensus 251 -------~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 251 -------RSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp -------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred -------cccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 11122468899999999999999999999999988754
No 112
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=365.92 Aligned_cols=266 Identities=25% Similarity=0.360 Sum_probs=215.1
Q ss_pred cCCCCCceEecCCcceEEEEEec--------CCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeC
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA--------NGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQ 872 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 872 (1109)
++|.+.++||+|+||+||+|++. +++.||||+++.. ......+.+.+|+++++++ +||||+++++++...
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 147 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSD-ATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccc-cCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence 67888999999999999999852 2467999999744 3334457789999999999 999999999999999
Q ss_pred CceEEEEEeccCCCHHHHhccCCC-------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee
Q 001274 873 DSNLLLYEYMENGSLGEQLHGNKQ-------------TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL 939 (1109)
Q Consensus 873 ~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll 939 (1109)
+..++||||+++|+|.+++..... ...+++..+..++.||+.||+||| +.+|+||||||+||++
T Consensus 148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll 224 (382)
T 3tt0_A 148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLV 224 (382)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEE
T ss_pred CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceEEE
Confidence 999999999999999999976542 124899999999999999999999 7799999999999999
Q ss_pred CCCCceEEeeccccccccCCCC-CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHH
Q 001274 940 DEEFQAHVGDFGLAKLIDLPYS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLV 1017 (1109)
Q Consensus 940 ~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~ 1017 (1109)
+.++.+||+|||+++....... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.... ..
T Consensus 225 ~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~----~~ 300 (382)
T 3tt0_A 225 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP----VE 300 (382)
T ss_dssp CTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC----HH
T ss_pred cCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC----HH
Confidence 9999999999999986653222 22344567889999999999999999999999999999999 999997543 22
Q ss_pred HHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCCCC
Q 001274 1018 TWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSDYP 1088 (1109)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~~ 1088 (1109)
+............. .......+.+++.+||+.||++|||++|++++|+.+........
T Consensus 301 ~~~~~~~~~~~~~~-------------~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~~ 358 (382)
T 3tt0_A 301 ELFKLLKEGHRMDK-------------PSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQE 358 (382)
T ss_dssp HHHHHHHTTCCCCC-------------CSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHcCCCCCC-------------CccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhcCC
Confidence 22222211111000 01112357899999999999999999999999999987664443
No 113
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.2e-37 Score=355.09 Aligned_cols=269 Identities=26% Similarity=0.348 Sum_probs=207.1
Q ss_pred HHHhcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccC--CCCceeeEEEEEEeC---
Q 001274 798 LEATGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKI--RHRNIVKLYGFCYHQ--- 872 (1109)
Q Consensus 798 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~~~~~~~--- 872 (1109)
....++|++.++||+|+||+||+|++. ++.||||++... ....+.+|.+++... +||||+++++++...
T Consensus 33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~-----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~ 106 (337)
T 3mdy_A 33 RTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT-----EEASWFRETEIYQTVLMRHENILGFIAADIKGTGS 106 (337)
T ss_dssp TTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG-----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGG
T ss_pred cccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc-----ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCC
Confidence 344578999999999999999999986 899999998632 334455666665554 999999999999887
Q ss_pred -CceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCC--------CeEecCCCCCceeeCCCC
Q 001274 873 -DSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRP--------HIIHRDIKSNNILLDEEF 943 (1109)
Q Consensus 873 -~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~--------~ivH~Dlkp~NIll~~~~ 943 (1109)
...++||||+++|+|.++++... +++..+..++.|++.||+||| +. +|+||||||+||+++.++
T Consensus 107 ~~~~~lv~e~~~~g~L~~~l~~~~----~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~~~~ivH~Dikp~Nill~~~~ 179 (337)
T 3mdy_A 107 WTQLYLITDYHENGSLYDYLKSTT----LDAKSMLKLAYSSVSGLCHLH---TEIFSTQGKPAIAHRDLKSKNILVKKNG 179 (337)
T ss_dssp GCEEEEEECCCTTCBHHHHHHHCC----BCHHHHHHHHHHHHHHHHHHH---SCBCSTTCBCCEECSCCCGGGEEECTTS
T ss_pred CCceEEEEeccCCCcHHHHhhccC----CCHHHHHHHHHHHHHHHHHHH---HhhhhhccCCCEEecccchHHEEECCCC
Confidence 67899999999999999997643 899999999999999999999 66 999999999999999999
Q ss_pred ceEEeeccccccccCCCCCC---ccccccccceeccccccCCCCCcc------chhHHHHHHHHHHHhC----------C
Q 001274 944 QAHVGDFGLAKLIDLPYSKS---MSAIAGSYGYIAPEYAYTMKVTEK------CDIYSFGVVLLELITG----------K 1004 (1109)
Q Consensus 944 ~~kl~DFG~a~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~------~DvwSlGvll~elltg----------~ 1004 (1109)
.+||+|||+++......... .....||+.|+|||++.+..++.+ +|||||||++|||+|| +
T Consensus 180 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~ 259 (337)
T 3mdy_A 180 TCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQ 259 (337)
T ss_dssp CEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCC
T ss_pred CEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCccccccccc
Confidence 99999999997664322211 134579999999999988776655 9999999999999999 6
Q ss_pred CCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1005 SPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1005 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
.||..................... ....+.... ...+....+.+++.+||+.||++|||+.|++++|+.+..+.
T Consensus 260 ~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~ 333 (337)
T 3mdy_A 260 LPYHDLVPSDPSYEDMREIVCIKK-LRPSFPNRW-----SSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQ 333 (337)
T ss_dssp CTTTTTSCSSCCHHHHHHHHTTSC-CCCCCCGGG-----GGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred ccHhhhcCCCCchhhhHHHHhhhc-cCccccccc-----hhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence 676654433322222222211111 011111110 12245567899999999999999999999999999988765
Q ss_pred C
Q 001274 1085 S 1085 (1109)
Q Consensus 1085 ~ 1085 (1109)
+
T Consensus 334 ~ 334 (337)
T 3mdy_A 334 D 334 (337)
T ss_dssp T
T ss_pred c
Confidence 3
No 114
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=7.2e-39 Score=383.01 Aligned_cols=257 Identities=24% Similarity=0.374 Sum_probs=212.2
Q ss_pred cCCCCCceEecCCcceEEEEEecC-CcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLAN-GEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
.+|++.++||+|+||+||+|+++. ++.||||+++... ...+.|.+|++++++++||||++++++|...+..++|||
T Consensus 220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E 296 (495)
T 1opk_A 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT---MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE 296 (495)
T ss_dssp GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS---SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc---cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEE
Confidence 568888999999999999999764 8899999997432 346789999999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
|+++|+|.++++.... ..+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++......
T Consensus 297 ~~~~g~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 372 (495)
T 1opk_A 297 FMTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT 372 (495)
T ss_dssp CCTTCBHHHHHHHSCT-TTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC
T ss_pred ccCCCCHHHHHHhcCc-CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeecccceeccCCc
Confidence 9999999999986432 23899999999999999999999 7799999999999999999999999999998765333
Q ss_pred CCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 961 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
........+++.|+|||++.+..++.++|||||||++|||++ |+.||.+.... .....+........
T Consensus 373 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~-~~~~~~~~~~~~~~----------- 440 (495)
T 1opk_A 373 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS-QVYELLEKDYRMER----------- 440 (495)
T ss_dssp EECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG-GHHHHHHTTCCCCC-----------
T ss_pred eeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHH-HHHHHHHcCCCCCC-----------
Confidence 233344567889999999999999999999999999999999 99999865422 22222222111100
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhh
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQ 1082 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 1082 (1109)
.......+.+++.+||+.||++||||.++++.|+.+.+
T Consensus 441 -----~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~ 478 (495)
T 1opk_A 441 -----PEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ 478 (495)
T ss_dssp -----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred -----CCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHh
Confidence 11122457899999999999999999999999988753
No 115
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.1e-39 Score=368.70 Aligned_cols=262 Identities=26% Similarity=0.324 Sum_probs=210.5
Q ss_pred cCCCCCceEecCCcceEEEEEec------CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCce
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA------NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSN 875 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 875 (1109)
++|++.+.||+|+||+||+|++. +++.||||+++.. ........+.+|+.++++++||||+++++++...+..
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV-CSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSS-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccc-cChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 57888999999999999999843 4678999999633 2334556789999999999999999999999999999
Q ss_pred EEEEEeccCCCHHHHhccCCC----CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCC---ceEEe
Q 001274 876 LLLYEYMENGSLGEQLHGNKQ----TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEF---QAHVG 948 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~---~~kl~ 948 (1109)
++||||+++|+|.+++..... ...+++.++..++.||+.||+||| +.+|+||||||+||+++.++ .+||+
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL~ 226 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIG 226 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEEC
Confidence 999999999999999976431 134899999999999999999999 77999999999999999555 59999
Q ss_pred eccccccccCC-CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhc
Q 001274 949 DFGLAKLIDLP-YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHE 1026 (1109)
Q Consensus 949 DFG~a~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~ 1026 (1109)
|||+++..... .........+|+.|+|||++.+..++.++|||||||++|||++ |+.||.... ..+........
T Consensus 227 DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~----~~~~~~~i~~~ 302 (367)
T 3l9p_A 227 DFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS----NQEVLEFVTSG 302 (367)
T ss_dssp CCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC----HHHHHHHHHTT
T ss_pred CCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC----HHHHHHHHHcC
Confidence 99999865322 2223344568999999999999999999999999999999998 999997532 22222222221
Q ss_pred cCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1027 MVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
..... .......+.+++.+||+.||++||++.+|+++++.+.+..
T Consensus 303 ~~~~~-------------~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~ 347 (367)
T 3l9p_A 303 GRMDP-------------PKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP 347 (367)
T ss_dssp CCCCC-------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred CCCCC-------------CccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence 11000 0111235779999999999999999999999999987664
No 116
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=7.6e-38 Score=347.97 Aligned_cols=253 Identities=27% Similarity=0.500 Sum_probs=202.4
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchh-----HHHHHHHHHhccCCCCceeeEEEEEEeCCce
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATAD-----NSFLAEISTLGKIRHRNIVKLYGFCYHQDSN 875 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~-----~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 875 (1109)
++|++.+.||+|+||+||+|++. +++.||||++.......... +.+.+|++++++++||||+++++++....
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 67888999999999999999974 78999999997544332222 67899999999999999999999986544
Q ss_pred EEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCC--eEecCCCCCceeeCCCCc-----eEEe
Q 001274 876 LLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPH--IIHRDIKSNNILLDEEFQ-----AHVG 948 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIll~~~~~-----~kl~ 948 (1109)
++||||+++|+|.+++..... .+++..+..++.|++.|++||| +.+ |+||||||+||+++.++. +||+
T Consensus 97 ~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~lH---~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~ 171 (287)
T 4f0f_A 97 RMVMEFVPCGDLYHRLLDKAH--PIKWSVKLRLMLDIALGIEYMQ---NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVA 171 (287)
T ss_dssp EEEEECCTTCBHHHHHHCTTS--CCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCSCCSGGGEEESCCCTTCSCCEEEC
T ss_pred eEEEEecCCCCHHHHHhcccC--CccHHHHHHHHHHHHHHHHHHH---hCCCCeecCCCCcceEEEeccCCCCceeEEeC
Confidence 799999999999999876544 3899999999999999999999 678 999999999999988776 9999
Q ss_pred eccccccccCCCCCCccccccccceecccccc--CCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhc
Q 001274 949 DFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAY--TMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHE 1026 (1109)
Q Consensus 949 DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~ 1026 (1109)
|||+++... .......||+.|+|||++. ...++.++||||+|+++|||++|+.||....... ..........
T Consensus 172 Dfg~~~~~~----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~--~~~~~~~~~~ 245 (287)
T 4f0f_A 172 DFGLSQQSV----HSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGK--IKFINMIREE 245 (287)
T ss_dssp CCTTCBCCS----SCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCH--HHHHHHHHHS
T ss_pred CCCcccccc----ccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccH--HHHHHHHhcc
Confidence 999998543 2334567999999999984 5567899999999999999999999998644221 1222221111
Q ss_pred cCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1027 MVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
.... .+ .......+.+++.+||+.||++|||++|+++.|++
T Consensus 246 ~~~~--~~----------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ 286 (287)
T 4f0f_A 246 GLRP--TI----------PEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSE 286 (287)
T ss_dssp CCCC--CC----------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred CCCC--CC----------CcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence 1110 00 11112457899999999999999999999999875
No 117
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=370.03 Aligned_cols=276 Identities=20% Similarity=0.251 Sum_probs=220.6
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC--ceEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD--SNLLL 878 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lv 878 (1109)
++|++.++||+|+||+||+|++. +++.||||++..... ....+.+.+|++++++++||||+++++++...+ ..++|
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF-LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG-GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccc-cchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 57889999999999999999976 589999999974322 233567889999999999999999999998765 67999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee----CCCCceEEeeccccc
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL----DEEFQAHVGDFGLAK 954 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll----~~~~~~kl~DFG~a~ 954 (1109)
|||+++|+|.+++........+++..+..++.||+.||+||| +.+|+||||||+||++ +.++.+||+|||+++
T Consensus 88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~ 164 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (396)
T ss_dssp ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence 999999999999987654445899999999999999999999 7799999999999999 788889999999998
Q ss_pred cccCCCCCCccccccccceeccccccC--------CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhc
Q 001274 955 LIDLPYSKSMSAIAGSYGYIAPEYAYT--------MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHE 1026 (1109)
Q Consensus 955 ~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~ 1026 (1109)
..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||..........+.+.....+
T Consensus 165 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~ 242 (396)
T 4eut_A 165 ELEDD--EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITG 242 (396)
T ss_dssp ECCCG--GGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHS
T ss_pred EccCC--CccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcC
Confidence 76522 22345679999999999865 567889999999999999999999998665444444444444433
Q ss_pred cCCCc-h----------hhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1027 MVPTS-E----------LFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1027 ~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
..+.. . .+.................+.+++.+||+.||++||+++|+++.+..+...
T Consensus 243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 243 KPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp CCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred CCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence 22100 0 001111122233456677889999999999999999999999999888664
No 118
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=1.6e-38 Score=358.14 Aligned_cols=263 Identities=26% Similarity=0.439 Sum_probs=215.3
Q ss_pred cCCCCCceEecCCcceEEEEEe------cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCc
Q 001274 802 GNFSEGAVIGRGACGTVYKATL------ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDS 874 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 874 (1109)
++|++.+.||+|+||+||+|++ .+++.||||+++... .....+.+.+|+++++++ +||||+++++++...+.
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~ 101 (313)
T 1t46_A 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA-HLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP 101 (313)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch-hHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence 5788899999999999999985 246889999997432 234457899999999999 99999999999999999
Q ss_pred eEEEEEeccCCCHHHHhccCCCC---------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQT---------------CLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL 939 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~---------------~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll 939 (1109)
.++||||+++|+|.+++...... ..+++..+..++.||+.||+||| +.+|+||||||+||++
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~ 178 (313)
T 1t46_A 102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILL 178 (313)
T ss_dssp CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEE
T ss_pred cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEE
Confidence 99999999999999999765421 23899999999999999999999 7799999999999999
Q ss_pred CCCCceEEeeccccccccCCCCCC-ccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHH
Q 001274 940 DEEFQAHVGDFGLAKLIDLPYSKS-MSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLV 1017 (1109)
Q Consensus 940 ~~~~~~kl~DFG~a~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~ 1017 (1109)
+.++.+||+|||+++......... .....+|+.|+|||++.+..++.++||||+|+++|||++ |+.||..........
T Consensus 179 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~ 258 (313)
T 1t46_A 179 THGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFY 258 (313)
T ss_dssp ETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHH
T ss_pred cCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHH
Confidence 999999999999998765332221 234457889999999999999999999999999999999 999998655433333
Q ss_pred HHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1018 TWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
..+........+ ......+.+++.+||+.||++|||+.|++++|++.....
T Consensus 259 ~~~~~~~~~~~~----------------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 309 (313)
T 1t46_A 259 KMIKEGFRMLSP----------------EHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISES 309 (313)
T ss_dssp HHHHHTCCCCCC----------------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred HHhccCCCCCCc----------------ccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHh
Confidence 333332111110 011235789999999999999999999999999987654
No 119
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=2.5e-38 Score=361.57 Aligned_cols=265 Identities=25% Similarity=0.380 Sum_probs=211.7
Q ss_pred HhcCCCCCceEecCCcceEEEEEec------CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATLA------NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD 873 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 873 (1109)
..++|++.+.||+|+||+||+|++. +++.||||+++... .....+.+.+|++++++++||||+++++++...+
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~ 123 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA-SADMQADFQREAALMAEFDNPNIVKLLGVCAVGK 123 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc-CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCC
Confidence 3468999999999999999999874 34889999997432 3344577999999999999999999999999999
Q ss_pred ceEEEEEeccCCCHHHHhccCCC---------------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCC
Q 001274 874 SNLLLYEYMENGSLGEQLHGNKQ---------------------TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDI 932 (1109)
Q Consensus 874 ~~~lv~e~~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dl 932 (1109)
..++||||+++|+|.+++..... ...+++.++..++.||++||+||| +.+|+||||
T Consensus 124 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dl 200 (343)
T 1luf_A 124 PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDL 200 (343)
T ss_dssp SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred ceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCC
Confidence 99999999999999999976431 134899999999999999999999 779999999
Q ss_pred CCCceeeCCCCceEEeeccccccccCCCC-CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCc
Q 001274 933 KSNNILLDEEFQAHVGDFGLAKLIDLPYS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSL 1010 (1109)
Q Consensus 933 kp~NIll~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~ 1010 (1109)
||+||+++.++.+||+|||+++....... .......+|+.|+|||++.+..++.++||||||+++|||++ |..||.+.
T Consensus 201 kp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~ 280 (343)
T 1luf_A 201 ATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM 280 (343)
T ss_dssp SGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred CcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCC
Confidence 99999999999999999999986542221 22244568899999999999999999999999999999999 99999754
Q ss_pred ccCCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccC
Q 001274 1011 ELGGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVS 1085 (1109)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~ 1085 (1109)
. ..+..........+. . .......+.+++.+||+.||++||++.+++++|+++.....
T Consensus 281 ~----~~~~~~~~~~~~~~~---~----------~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~ 338 (343)
T 1luf_A 281 A----HEEVIYYVRDGNILA---C----------PENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE 338 (343)
T ss_dssp C----HHHHHHHHHTTCCCC---C----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred C----hHHHHHHHhCCCcCC---C----------CCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence 3 222222222221110 0 01112357899999999999999999999999999876553
No 120
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=5.7e-38 Score=357.27 Aligned_cols=257 Identities=21% Similarity=0.251 Sum_probs=206.7
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCC-cchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEG-ATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 878 (1109)
++|++.+.||+|+||+||+|+++ +++.||+|+++..... ....+.+.+|..+++++ +||||+++++++...+..++|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 57888999999999999999975 6899999999755332 23346688999999887 899999999999999999999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccC
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDL 958 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~ 958 (1109)
|||+++|+|.+++..... +++..++.++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 89 ~e~~~gg~L~~~l~~~~~---l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~ 162 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQRK---LPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 162 (345)
T ss_dssp ECCCCSCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCC
T ss_pred EeCCCCCcHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEeccccccccC
Confidence 999999999999976543 899999999999999999999 77999999999999999999999999999986432
Q ss_pred CCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCC-----cHHHHHHHhhhccCCCchh
Q 001274 959 PYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGG-----DLVTWVRRSIHEMVPTSEL 1033 (1109)
Q Consensus 959 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 1033 (1109)
........+||+.|+|||++.+..++.++||||+||++|||++|+.||....... .................
T Consensus 163 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p-- 239 (345)
T 3a8x_A 163 -PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIP-- 239 (345)
T ss_dssp -TTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCC--
T ss_pred -CCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCC--
Confidence 1233455689999999999999999999999999999999999999997532111 11111111111111111
Q ss_pred hhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCH------HHHHHHHHH
Q 001274 1034 FDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTM------REVIAMMID 1079 (1109)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~------~evl~~L~~ 1079 (1109)
......+.+++.+||+.||++||++ .|+++|-+.
T Consensus 240 ------------~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~f 279 (345)
T 3a8x_A 240 ------------RSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFF 279 (345)
T ss_dssp ------------TTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGGG
T ss_pred ------------CCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCcc
Confidence 1112357789999999999999995 788877543
No 121
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=6.2e-38 Score=361.77 Aligned_cols=255 Identities=20% Similarity=0.224 Sum_probs=207.7
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|++.+.||+|+||+||+|++. +++.||+|++.... ......+.+|+++++.++||||+++++++.+.+..++|||
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E 128 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY--PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILE 128 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEE
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccc--hhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEE
Confidence 67999999999999999999875 68999999987432 2344578899999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC--CCceEEeeccccccccC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE--EFQAHVGDFGLAKLIDL 958 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~--~~~~kl~DFG~a~~~~~ 958 (1109)
|+++|+|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+||+++. ++.+||+|||+++....
T Consensus 129 ~~~gg~L~~~l~~~~~--~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~ 203 (387)
T 1kob_A 129 FLSGGELFDRIAAEDY--KMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP 203 (387)
T ss_dssp CCCCCBHHHHTTCTTC--CBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT
T ss_pred cCCCCcHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceecCC
Confidence 9999999999976543 3899999999999999999999 779999999999999974 57899999999987652
Q ss_pred CCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 959 PYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 959 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
. .......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.. ..+................
T Consensus 204 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~----~~~~~~~i~~~~~~~~~~~---- 273 (387)
T 1kob_A 204 D--EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED----DLETLQNVKRCDWEFDEDA---- 273 (387)
T ss_dssp T--SCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS----HHHHHHHHHHCCCCCCSST----
T ss_pred C--cceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCC----HHHHHHHHHhCCCCCCccc----
Confidence 2 22344579999999999999999999999999999999999999997532 2222222222221111100
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
.......+.+++.+||+.||++|||+.|++++-+.
T Consensus 274 ------~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~hp~~ 308 (387)
T 1kob_A 274 ------FSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWL 308 (387)
T ss_dssp ------TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTSTTT
T ss_pred ------cccCCHHHHHHHHHHcCCChhHCcCHHHHhhCccc
Confidence 01112357799999999999999999999987543
No 122
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.4e-38 Score=350.54 Aligned_cols=254 Identities=21% Similarity=0.291 Sum_probs=198.7
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCC------------------------cchhHHHHHHHHHhc
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEG------------------------ATADNSFLAEISTLG 855 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~------------------------~~~~~~~~~E~~~l~ 855 (1109)
.++|++.+.||+|+||+||+|++. +++.||||++...... ....+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 368999999999999999999865 6899999999754311 112356889999999
Q ss_pred cCCCCceeeEEEEEEe--CCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCC
Q 001274 856 KIRHRNIVKLYGFCYH--QDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIK 933 (1109)
Q Consensus 856 ~l~h~niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk 933 (1109)
+++||||+++++++.+ .+..++||||+++++|.+++... .+++..+..++.||+.||+||| +.+|+|||||
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlk 164 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLK----PLSEDQARFYFQDLIKGIEYLH---YQKIIHRDIK 164 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence 9999999999999987 56789999999999998865432 3899999999999999999999 7799999999
Q ss_pred CCceeeCCCCceEEeeccccccccCCCCCCccccccccceeccccccCCC---CCccchhHHHHHHHHHHHhCCCCCCCc
Q 001274 934 SNNILLDEEFQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMK---VTEKCDIYSFGVVLLELITGKSPVQSL 1010 (1109)
Q Consensus 934 p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DvwSlGvll~elltg~~pf~~~ 1010 (1109)
|+||+++.++.+||+|||+++..... ........||+.|+|||++.+.. ++.++||||+||++|||++|+.||...
T Consensus 165 p~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~ 243 (298)
T 2zv2_A 165 PSNLLVGEDGHIKIADFGVSNEFKGS-DALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE 243 (298)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSS-SCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred HHHEEECCCCCEEEecCCCccccccc-cccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCc
Confidence 99999999999999999999876522 22234567999999999998765 478899999999999999999999753
Q ss_pred ccCCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1011 ELGGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
. ................. .......+.+++.+||+.||++|||+.|++++-+
T Consensus 244 ~----~~~~~~~~~~~~~~~~~------------~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~hp~ 295 (298)
T 2zv2_A 244 R----IMCLHSKIKSQALEFPD------------QPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPW 295 (298)
T ss_dssp S----HHHHHHHHHHCCCCCCS------------SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTCHH
T ss_pred c----HHHHHHHHhcccCCCCC------------ccccCHHHHHHHHHHhhcChhhCCCHHHHhcCcc
Confidence 2 22222222221111100 0011235779999999999999999999998755
No 123
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=4.3e-38 Score=358.78 Aligned_cols=250 Identities=19% Similarity=0.211 Sum_probs=208.5
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.+.||+|+||+||+|++. +++.||||++..... .....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 57889999999999999999975 689999999964321 1223467889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 121 e~~~gg~L~~~l~~~~~---~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~- 193 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRIGR---FSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG- 193 (350)
T ss_dssp ECCTTCBHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS-
T ss_pred cCCCCCcHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceeccC-
Confidence 99999999999986543 899999999999999999999 77999999999999999999999999999987542
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
.....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.. ..+..............
T Consensus 194 ---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~----~~~~~~~i~~~~~~~p~------- 259 (350)
T 1rdq_E 194 ---RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ----PIQIYEKIVSGKVRFPS------- 259 (350)
T ss_dssp ---CBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCCCCCCT-------
T ss_pred ---CcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCC----HHHHHHHHHcCCCCCCC-------
Confidence 2345679999999999999999999999999999999999999997532 22333332222221111
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHHHHH
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRPT-----MREVIAMMID 1079 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RPt-----~~evl~~L~~ 1079 (1109)
.....+.+++.+||+.||++||+ ++|++++-+.
T Consensus 260 -------~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~~f 297 (350)
T 1rdq_E 260 -------HFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWF 297 (350)
T ss_dssp -------TCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGG
T ss_pred -------CCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhCcCc
Confidence 11235779999999999999998 9999987654
No 124
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.6e-38 Score=375.02 Aligned_cols=344 Identities=21% Similarity=0.191 Sum_probs=226.6
Q ss_pred EEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCcc
Q 001274 364 KLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNR 443 (1109)
Q Consensus 364 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~ 443 (1109)
.++.++++++ .+|..+. +.++.|+|++|++++..+..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 4455555554 3333331 345555555555555555555555556666666665555555556666666666666666
Q ss_pred ccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChh
Q 001274 444 LSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSE 523 (1109)
Q Consensus 444 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 523 (1109)
+++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|.++++.+..|.++++|++|+|++|++++..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 66555555666666666666666666666666666666666666666666666666666666677777766666655556
Q ss_pred hcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccc
Q 001274 524 VGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLT 603 (1109)
Q Consensus 524 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 603 (1109)
+.++++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+.+|.......+|+.|+|++|++++..+..|..+++|+
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 66666777777777776666666666667777777776666656666555555677777777777655445666677777
Q ss_pred eeeccCccccccccccccccchhhhhhccCCccccccccccccCccccceeecCCCccccCCchhhhccccceEEEccCc
Q 001274 604 ELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIPASMGEQMSLLVCNLSNN 683 (1109)
Q Consensus 604 ~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l~ls~N 683 (1109)
.|+|++|.+++..+..+.++..|+ .|+|++|++++..|..|..+++|+.|||++|+|++..+..|..+++|++|+|++|
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQ-EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCC-EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred eeECCCCcCCccChhhccccccCC-EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 777777777666666666666665 4777777777777888888888888888888888766677788888888888888
Q ss_pred ccccccCCCcccccccCCcccCCCCccc
Q 001274 684 NLVGTVPNTTVFRRIDSSNFAGNRGLCM 711 (1109)
Q Consensus 684 ~l~g~~p~~~~~~~~~~~~~~~n~~~c~ 711 (1109)
++.|..+....+.......+.++...|.
T Consensus 331 ~l~c~c~~~~~~~~~~~~~~~~~~~~C~ 358 (477)
T 2id5_A 331 PLACDCRLLWVFRRRWRLNFNRQQPTCA 358 (477)
T ss_dssp CEECSGGGHHHHTTTTSSCCTTCCCBEE
T ss_pred CccCccchHhHHhhhhccccCccCceeC
Confidence 8888776544444444456777777774
No 125
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=1.5e-38 Score=360.40 Aligned_cols=258 Identities=23% Similarity=0.389 Sum_probs=201.8
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCc----EEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGE----VIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~----~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 876 (1109)
++|++.++||+|+||+||+|++. +++ +||+|.+.... .....+.+.+|++++++++||||+++++++.... .+
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~ 92 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT-SPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC--------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeeccccc-CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eE
Confidence 57888999999999999999864 444 35888775332 2344578999999999999999999999998754 78
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
+|+||+++|+|.+++...... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 93 ~v~e~~~~g~L~~~l~~~~~~--~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~ 167 (327)
T 3poz_A 93 LITQLMPFGCLLDYVREHKDN--IGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167 (327)
T ss_dssp EEEECCTTCBHHHHHHHSTTS--CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHHHH
T ss_pred EEEEecCCCcHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCCCCEEEccCcceeEc
Confidence 999999999999999875543 899999999999999999999 779999999999999999999999999999876
Q ss_pred cCCCCC-CccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhh
Q 001274 957 DLPYSK-SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELF 1034 (1109)
Q Consensus 957 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1109)
...... ......+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... ......+....... .
T Consensus 168 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-~~~~~~~~~~~~~~--~---- 240 (327)
T 3poz_A 168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-SEISSILEKGERLP--Q---- 240 (327)
T ss_dssp TTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG-GGHHHHHHTTCCCC--C----
T ss_pred cCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCH-HHHHHHHHcCCCCC--C----
Confidence 533222 2234457889999999999999999999999999999999 9999986432 22222222211111 0
Q ss_pred hhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1035 DKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
.......+.+++.+||+.||++||++.|++++|+.+...
T Consensus 241 ----------~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 241 ----------PPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp ----------CTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred ----------CccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 111123577899999999999999999999999887653
No 126
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=1.5e-38 Score=361.25 Aligned_cols=254 Identities=22% Similarity=0.314 Sum_probs=206.4
Q ss_pred HhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceE
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 876 (1109)
..++|++.+.||+|+||+||+|+++ +++.||||+++.... .....+.+..|..+++.+ +||||+++++++.+.+..|
T Consensus 15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~ 94 (345)
T 1xjd_A 15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLF 94 (345)
T ss_dssp -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEE
Confidence 4578999999999999999999975 689999999974321 112345678899998876 9999999999999999999
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
+||||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 95 lv~E~~~gg~L~~~l~~~~~---~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~ 168 (345)
T 1xjd_A 95 FVMEYLNGGDLMYHIQSCHK---FDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKEN 168 (345)
T ss_dssp EEEECCTTCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EEEeCCCCCcHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChhhhhc
Confidence 99999999999999976543 899999999999999999999 779999999999999999999999999999864
Q ss_pred cCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK 1036 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1109)
.. ........+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.. ..+..............
T Consensus 169 ~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~----~~~~~~~i~~~~~~~p~---- 239 (345)
T 1xjd_A 169 ML-GDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD----EEELFHSIRMDNPFYPR---- 239 (345)
T ss_dssp CC-TTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCCCCCCT----
T ss_pred cc-CCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCC----HHHHHHHHHhCCCCCCc----
Confidence 32 1223456689999999999999999999999999999999999999997532 22222222222211111
Q ss_pred hcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHH-HHHHHHH
Q 001274 1037 RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMR-EVIAMMI 1078 (1109)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~-evl~~L~ 1078 (1109)
. ....+.+++.+||+.||++||++. +++++-+
T Consensus 240 ~----------~s~~~~~li~~lL~~dp~~R~~~~~~i~~hp~ 272 (345)
T 1xjd_A 240 W----------LEKEAKDLLVKLFVREPEKRLGVRGDIRQHPL 272 (345)
T ss_dssp T----------SCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGG
T ss_pred c----------cCHHHHHHHHHHhcCCHhHcCCChHHHHcCcc
Confidence 0 123577899999999999999998 8876543
No 127
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=1.6e-38 Score=354.92 Aligned_cols=264 Identities=28% Similarity=0.380 Sum_probs=205.0
Q ss_pred cCCCCCceEecCCcceEEEEEe-----cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeC--Cc
Q 001274 802 GNFSEGAVIGRGACGTVYKATL-----ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQ--DS 874 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~ 874 (1109)
++|++.++||+|+||+||+|++ .+++.||||++... .....+.+.+|++++++++||||+++++++... ..
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 87 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS--TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN 87 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTS
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCc
Confidence 6788999999999999999984 26889999998633 234456789999999999999999999998654 45
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
.++||||+++|+|.+++...... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 88 ~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~ 162 (295)
T 3ugc_A 88 LKLIMEYLPYGSLRDYLQKHKER--IDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTK 162 (295)
T ss_dssp CEEEEECCTTCBHHHHHHHCGGG--CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCSCC
T ss_pred eEEEEEeCCCCCHHHHHHhcccc--cCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCcccc
Confidence 79999999999999999876543 899999999999999999999 7799999999999999999999999999998
Q ss_pred cccCCCC--CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccC-----------CcHHHHHH
Q 001274 955 LIDLPYS--KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELG-----------GDLVTWVR 1021 (1109)
Q Consensus 955 ~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~-----------~~~~~~~~ 1021 (1109)
....... .......++..|+|||++.+..++.++||||+|+++|||++|..||...... ......+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (295)
T 3ugc_A 163 VLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 242 (295)
T ss_dssp -------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHH
T ss_pred cccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHH
Confidence 7643221 1223445778899999999999999999999999999999999998643200 00000111
Q ss_pred HhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1022 RSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
........ ..........+.+++.+||+.||++|||++|++++|+.+....
T Consensus 243 ~~~~~~~~------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l 293 (295)
T 3ugc_A 243 ELLKNNGR------------LPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM 293 (295)
T ss_dssp HHHHTTCC------------CCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred HHHhccCc------------CCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence 11111000 0011122346889999999999999999999999999987654
No 128
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=3.1e-38 Score=356.03 Aligned_cols=261 Identities=26% Similarity=0.396 Sum_probs=212.1
Q ss_pred cCCCCCceEecCCcceEEEEEe------cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCce
Q 001274 802 GNFSEGAVIGRGACGTVYKATL------ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSN 875 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 875 (1109)
++|.+.+.||+|+||.||+|++ .+++.||||+++.. ......+.+.+|++++++++||||+++++++...+..
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 101 (314)
T 2ivs_A 23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKEN-ASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL 101 (314)
T ss_dssp GGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTT-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCC-CCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence 6788899999999999999986 23578999999743 2334557789999999999999999999999999999
Q ss_pred EEEEEeccCCCHHHHhccCCC---------------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCC
Q 001274 876 LLLYEYMENGSLGEQLHGNKQ---------------------TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKS 934 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp 934 (1109)
++||||+++|+|.+++..... ...+++..+..++.||++||+||| +.+|+||||||
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dikp 178 (314)
T 2ivs_A 102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLAA 178 (314)
T ss_dssp EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCCSG
T ss_pred EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCcccccch
Confidence 999999999999999976542 123889999999999999999999 77999999999
Q ss_pred CceeeCCCCceEEeeccccccccCCCC-CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCccc
Q 001274 935 NNILLDEEFQAHVGDFGLAKLIDLPYS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLEL 1012 (1109)
Q Consensus 935 ~NIll~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~ 1012 (1109)
+||+++.++.+||+|||+++....... .......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||.+...
T Consensus 179 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~ 258 (314)
T 2ivs_A 179 RNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP 258 (314)
T ss_dssp GGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred heEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 999999999999999999986643222 12234467889999999999999999999999999999999 9999976442
Q ss_pred CCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1013 GGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
. .....+........ .......+.+++.+||+.||++||++.|++++|+++...
T Consensus 259 ~-~~~~~~~~~~~~~~----------------~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 259 E-RLFNLLKTGHRMER----------------PDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp G-GHHHHHHTTCCCCC----------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred H-HHHHHhhcCCcCCC----------------CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence 2 22222221111000 111124578999999999999999999999999988754
No 129
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=357.23 Aligned_cols=270 Identities=21% Similarity=0.334 Sum_probs=204.1
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|++.++||+|+||+||+|++. +++.||||++..........+.+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 67899999999999999999975 58999999997655444456778899999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
|+++++|.+++..... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.++.....
T Consensus 83 ~~~~~~l~~~~~~~~~---~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~- 155 (311)
T 4agu_A 83 YCDHTVLHELDRYQRG---VPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGP- 155 (311)
T ss_dssp CCSEEHHHHHHHTSSC---CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC---
T ss_pred eCCCchHHHHHhhhcC---CCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCc-
Confidence 9999999998876543 899999999999999999999 779999999999999999999999999999876522
Q ss_pred CCCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCc-------h
Q 001274 961 SKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTS-------E 1032 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~-------~ 1032 (1109)
........+|+.|+|||++.+ ..++.++||||+|+++|||++|+.||.+....+.. ..+........+.. .
T Consensus 156 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 234 (311)
T 4agu_A 156 SDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQL-YLIRKTLGDLIPRHQQVFSTNQ 234 (311)
T ss_dssp ----------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH-HHHHHHHCSCCHHHHHHHHTCG
T ss_pred ccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHH-HHHHHHhccccccccccccccc
Confidence 222345578999999999876 66899999999999999999999999764322111 11222111111000 0
Q ss_pred hhhh-------hcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1033 LFDK-------RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1033 ~~~~-------~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
.+.. ...............+.+++.+||+.||++|||++|++++-+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f 288 (311)
T 4agu_A 235 YFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHHPYF 288 (311)
T ss_dssp GGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTSGGG
T ss_pred ccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcChHH
Confidence 0000 0000000001223457899999999999999999999988544
No 130
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=1.7e-38 Score=375.76 Aligned_cols=258 Identities=28% Similarity=0.410 Sum_probs=204.3
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEEe
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEY 881 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 881 (1109)
++|++.++||+|+||+||+|+++++..||||+++... ...+.|.+|++++++++||||+++++++.. +..++||||
T Consensus 184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~ 259 (452)
T 1fmk_A 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT---MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 259 (452)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS---SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC---CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehh
Confidence 5688889999999999999999888889999997432 235679999999999999999999999876 678999999
Q ss_pred ccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCCC
Q 001274 882 MENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPYS 961 (1109)
Q Consensus 882 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~ 961 (1109)
+++|+|.+++..... ..+++..+..++.||+.||+||| +++|+||||||+||+++.++.+||+|||+++.......
T Consensus 260 ~~~gsL~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~ 335 (452)
T 1fmk_A 260 MSKGSLLDFLKGETG-KYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY 335 (452)
T ss_dssp CTTCBHHHHHSHHHH-TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC-------
T ss_pred hcCCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCce
Confidence 999999999975321 23899999999999999999999 77999999999999999999999999999987653332
Q ss_pred CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcch
Q 001274 962 KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDL 1040 (1109)
Q Consensus 962 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1109)
.......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+.. ..+.......... ..
T Consensus 336 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~----~~~~~~~i~~~~~-~~--------- 401 (452)
T 1fmk_A 336 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV----NREVLDQVERGYR-MP--------- 401 (452)
T ss_dssp -------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC----HHHHHHHHHTTCC-CC---------
T ss_pred ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCC----HHHHHHHHHcCCC-CC---------
Confidence 33344567889999999999999999999999999999999 999997543 1222222111110 00
Q ss_pred hhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1041 SAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1041 ~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
........+.+++.+||+.||++|||++++++.|+......
T Consensus 402 ---~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~ 442 (452)
T 1fmk_A 402 ---CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST 442 (452)
T ss_dssp ---CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred ---CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccC
Confidence 01112245789999999999999999999999999886544
No 131
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.9e-39 Score=371.93 Aligned_cols=266 Identities=21% Similarity=0.197 Sum_probs=209.1
Q ss_pred HHHHHhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC
Q 001274 796 NLLEATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD 873 (1109)
Q Consensus 796 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 873 (1109)
+.....++|++.++||+|+||+||+|+.+ +++.||||+++.... .....+.+.+|..++..++||||+++++++.+.+
T Consensus 55 ~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~ 134 (412)
T 2vd5_A 55 EVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDEN 134 (412)
T ss_dssp HHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSS
T ss_pred hccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC
Confidence 33345678999999999999999999975 699999999964211 1123355889999999999999999999999999
Q ss_pred ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccc
Q 001274 874 SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLA 953 (1109)
Q Consensus 874 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a 953 (1109)
..|+||||+++|+|.+++...+. .+++..++.++.||+.||+||| +.+|+||||||+|||++.++.+||+|||++
T Consensus 135 ~~~lVmE~~~gg~L~~~l~~~~~--~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL~DFGla 209 (412)
T 2vd5_A 135 YLYLVMEYYVGGDLLTLLSKFGE--RIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGSC 209 (412)
T ss_dssp EEEEEECCCCSCBHHHHHHHHSS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred EEEEEEcCCCCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEEeechhh
Confidence 99999999999999999976543 3899999999999999999999 779999999999999999999999999999
Q ss_pred ccccCCCCCCccccccccceecccccc-------CCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhc
Q 001274 954 KLIDLPYSKSMSAIAGSYGYIAPEYAY-------TMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHE 1026 (1109)
Q Consensus 954 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~ 1026 (1109)
+.............+||+.|+|||++. +..++.++||||+||++|||++|+.||.+..........+......
T Consensus 210 ~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~ 289 (412)
T 2vd5_A 210 LKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHL 289 (412)
T ss_dssp EECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHC
T ss_pred eeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCc
Confidence 876533322334568999999999987 4578999999999999999999999997543211111111111011
Q ss_pred cCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCC---CCHHHHHHHHHHh
Q 001274 1027 MVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNR---PTMREVIAMMIDA 1080 (1109)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~R---Pt~~evl~~L~~~ 1080 (1109)
..+. .. ......+.+++.+|+. +|++| |+++|+++|-+..
T Consensus 290 ~~p~---~~----------~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~Hpff~ 332 (412)
T 2vd5_A 290 SLPL---VD----------EGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTHPFFF 332 (412)
T ss_dssp CCC-----------------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTSGGGT
T ss_pred CCCc---cc----------cCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcCCCcC
Confidence 1110 00 0112357799999999 99998 6999999886653
No 132
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=6.9e-38 Score=346.75 Aligned_cols=256 Identities=25% Similarity=0.369 Sum_probs=206.6
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCC-cchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEG-ATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 878 (1109)
.++|++.+.||+|+||+||+|++. +++.||||++...... ......+.+|++++++++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 367889999999999999999865 5789999998643211 12345688999999999999999999999999999999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccC
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDL 958 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~ 958 (1109)
|||+++|+|.+++..... +++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 88 ~e~~~~~~l~~~l~~~~~---~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~ 161 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKLSK---FDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS 161 (279)
T ss_dssp ECCCTTEEHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC--
T ss_pred EecCCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCc
Confidence 999999999999976543 899999999999999999999 78999999999999999999999999999865432
Q ss_pred CCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 959 PYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 959 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
.......|++.|+|||++.+..++.++||||+|+++|+|++|+.||.... ..+...............
T Consensus 162 ---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----~~~~~~~~~~~~~~~~~~----- 229 (279)
T 3fdn_A 162 ---SRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT----YQETYKRISRVEFTFPDF----- 229 (279)
T ss_dssp ---------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHHTCCCCCTT-----
T ss_pred ---ccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCc----HHHHHHHHHhCCCCCCCc-----
Confidence 22344578999999999999999999999999999999999999997532 222222222211111111
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
....+.+++.+||+.||++|||+.|++++-+-....
T Consensus 230 ---------~~~~~~~li~~~l~~~p~~Rps~~e~l~h~~~~~~~ 265 (279)
T 3fdn_A 230 ---------VTEGARDLISRLLKHNPSQRPMLREVLEHPWITANS 265 (279)
T ss_dssp ---------SCHHHHHHHHHHCCSSGGGSCCHHHHHHCHHHHHHC
T ss_pred ---------CCHHHHHHHHHHhccChhhCCCHHHHhhCccccCCc
Confidence 123567899999999999999999999998765543
No 133
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=8.2e-39 Score=363.97 Aligned_cols=264 Identities=25% Similarity=0.417 Sum_probs=212.7
Q ss_pred HhcCCCCCceEecCCcceEEEEEecC------CcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeC
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATLAN------GEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQ 872 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 872 (1109)
..++|++.+.||+|+||+||+|++.. ...||+|++.... .....+.+.+|+++++++ +||||+++++++...
T Consensus 44 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~ 122 (333)
T 2i1m_A 44 PRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA-HADEKEALMSELKIMSHLGQHENIVNLLGACTHG 122 (333)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred CHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc-ChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecC
Confidence 34789999999999999999998642 2479999997432 334457789999999999 899999999999999
Q ss_pred CceEEEEEeccCCCHHHHhccCCC-----------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC
Q 001274 873 DSNLLLYEYMENGSLGEQLHGNKQ-----------TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE 941 (1109)
Q Consensus 873 ~~~~lv~e~~~~gsL~~~l~~~~~-----------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~ 941 (1109)
+..++||||+++|+|.+++..... ...+++..+..++.||+.||+||| +.+|+||||||+||+++.
T Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~ 199 (333)
T 2i1m_A 123 GPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLTN 199 (333)
T ss_dssp SSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGCEEEG
T ss_pred CceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceEEECC
Confidence 999999999999999999975321 123799999999999999999999 779999999999999999
Q ss_pred CCceEEeeccccccccCCCCC-CccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHH
Q 001274 942 EFQAHVGDFGLAKLIDLPYSK-SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTW 1019 (1109)
Q Consensus 942 ~~~~kl~DFG~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~ 1019 (1109)
++.+||+|||+++........ ......+|+.|+|||++.+..++.++||||||+++|||+| |..||.+..........
T Consensus 200 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~ 279 (333)
T 2i1m_A 200 GHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKL 279 (333)
T ss_dssp GGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHH
T ss_pred CCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHH
Confidence 999999999999866432221 1234457889999999999999999999999999999999 99999865433333333
Q ss_pred HHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1020 VRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1020 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
+........+ ......+.+++.+||+.||++|||+.|++++|+.....
T Consensus 280 ~~~~~~~~~~----------------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~ 327 (333)
T 2i1m_A 280 VKDGYQMAQP----------------AFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQE 327 (333)
T ss_dssp HHHTCCCCCC----------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCC----------------CCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHh
Confidence 3332111110 00123577899999999999999999999999887654
No 134
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=1.5e-37 Score=351.38 Aligned_cols=255 Identities=24% Similarity=0.277 Sum_probs=209.1
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCc----chhHHHHHHHHHhccCCCCceeeEEEEEEeCCceE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGA----TADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 876 (1109)
++|++.+.||+|+||+||+|++. +++.||||+++...... ...+.+.+|++++++++||||+++++++...+..+
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 91 (321)
T 2a2a_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV 91 (321)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence 57899999999999999999976 68999999997653322 13567999999999999999999999999999999
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCC----ceEEeeccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEF----QAHVGDFGL 952 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~----~~kl~DFG~ 952 (1109)
+||||+++++|.+++..... +++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||+
T Consensus 92 lv~e~~~~~~L~~~l~~~~~---~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~ 165 (321)
T 2a2a_A 92 LILELVSGGELFDFLAQKES---LSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGL 165 (321)
T ss_dssp EEECCCCSCBHHHHHHTCSC---EEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCTT
T ss_pred EEEEcCCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEccCcc
Confidence 99999999999999976543 899999999999999999999 77999999999999999888 799999999
Q ss_pred cccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCch
Q 001274 953 AKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSE 1032 (1109)
Q Consensus 953 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1109)
++..... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||.+.. ..+..............
T Consensus 166 ~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~i~~~~~~~~~ 239 (321)
T 2a2a_A 166 AHEIEDG--VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT----KQETLANITSVSYDFDE 239 (321)
T ss_dssp CEECCTT--CCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSS----HHHHHHHHHTTCCCCCH
T ss_pred ceecCcc--ccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCC----HHHHHHHHHhcccccCh
Confidence 9876532 22345679999999999999999999999999999999999999997532 22233222222211111
Q ss_pred hhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1033 LFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
... ......+.+++.+||+.||++|||+.|++++-+
T Consensus 240 ~~~----------~~~~~~~~~li~~~l~~dp~~Rps~~e~l~hp~ 275 (321)
T 2a2a_A 240 EFF----------SHTSELAKDFIRKLLVKETRKRLTIQEALRHPW 275 (321)
T ss_dssp HHH----------TTCCHHHHHHHHTTSCSSTTTSCCHHHHHHSTT
T ss_pred hhh----------cccCHHHHHHHHHHcCCChhhCcCHHHHhcCcc
Confidence 111 011235779999999999999999999998754
No 135
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=6.6e-38 Score=357.95 Aligned_cols=254 Identities=22% Similarity=0.271 Sum_probs=191.6
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.+.||+|+||+||+|++. +++.||||+++... ..+.+.+|++++++++||||+++++++...+..++||
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 127 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV----DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVL 127 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC--------------CHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch----hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEE
Confidence 367899999999999999999976 58899999997432 3456889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC---CCceEEeeccccccc
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE---EFQAHVGDFGLAKLI 956 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kl~DFG~a~~~ 956 (1109)
||+++|+|.+++..... +++.++..++.||+.||+||| +.+|+||||||+||+++. ++.+||+|||+++..
T Consensus 128 e~~~~~~L~~~l~~~~~---~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~ 201 (349)
T 2w4o_A 128 ELVTGGELFDRIVEKGY---YSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIV 201 (349)
T ss_dssp CCCCSCBHHHHHTTCSS---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC-----
T ss_pred EeCCCCCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCcccccc
Confidence 99999999999976543 899999999999999999999 779999999999999975 889999999999866
Q ss_pred cCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK 1036 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1109)
.. ........||+.|+|||++.+..++.++|||||||++|||++|+.||...... ...................
T Consensus 202 ~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~---~~~~~~i~~~~~~~~~~~~- 275 (349)
T 2w4o_A 202 EH--QVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGD---QFMFRRILNCEYYFISPWW- 275 (349)
T ss_dssp -------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCH---HHHHHHHHTTCCCCCTTTT-
T ss_pred Cc--ccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCccc---HHHHHHHHhCCCccCCchh-
Confidence 42 22234567999999999999999999999999999999999999999753321 1122222221111110000
Q ss_pred hcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1037 RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
......+.+++.+||+.||++|||+.|++++-+.
T Consensus 276 ---------~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~ 309 (349)
T 2w4o_A 276 ---------DEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWV 309 (349)
T ss_dssp ---------TTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTT
T ss_pred ---------hhCCHHHHHHHHHHccCChhhCcCHHHHhcCccc
Confidence 1112357799999999999999999999987544
No 136
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=1.1e-38 Score=351.40 Aligned_cols=251 Identities=27% Similarity=0.457 Sum_probs=193.4
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCC--cchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEG--ATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.+.||+|+||+||+|++. ++.||||+++..... ....+.+.+|+++++.++||||+++++++...+..++||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 57888999999999999999985 899999998754322 223467899999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCC---eEecCCCCCceeeCC--------CCceEEe
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPH---IIHRDIKSNNILLDE--------EFQAHVG 948 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~---ivH~Dlkp~NIll~~--------~~~~kl~ 948 (1109)
||+++++|.+++... .+++..+..++.|++.|++||| +.+ |+||||||+||+++. ++.+||+
T Consensus 86 e~~~~~~L~~~~~~~----~~~~~~~~~i~~~l~~~l~~lH---~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~ 158 (271)
T 3dtc_A 86 EFARGGPLNRVLSGK----RIPPDILVNWAVQIARGMNYLH---DEAIVPIIHRDLKSSNILILQKVENGDLSNKILKIT 158 (271)
T ss_dssp ECCTTEEHHHHHTSS----CCCHHHHHHHHHHHHHHHHHHH---HSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEEC
T ss_pred EcCCCCCHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHH---hCCCCceeecCCchHHEEEecccccccccCcceEEc
Confidence 999999999998643 3899999999999999999999 556 999999999999986 7789999
Q ss_pred eccccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccC
Q 001274 949 DFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMV 1028 (1109)
Q Consensus 949 DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~ 1028 (1109)
|||.++..... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||.+... ............
T Consensus 159 Dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~----~~~~~~~~~~~~ 231 (271)
T 3dtc_A 159 DFGLAREWHRT---TKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDG----LAVAYGVAMNKL 231 (271)
T ss_dssp CCCC----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCH----HHHHHHHHTSCC
T ss_pred cCCcccccccc---cccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHhhhcCCC
Confidence 99999865422 22345789999999999999999999999999999999999999985431 111111111111
Q ss_pred CCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1029 PTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
... ........+.+++.+||+.||++|||+.|++++|+.
T Consensus 232 ~~~------------~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~ 270 (271)
T 3dtc_A 232 ALP------------IPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTT 270 (271)
T ss_dssp CCC------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC
T ss_pred CCC------------CCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhc
Confidence 000 011112457899999999999999999999999975
No 137
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.2e-37 Score=350.12 Aligned_cols=264 Identities=22% Similarity=0.271 Sum_probs=202.5
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCC-cchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEG-ATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 878 (1109)
.++|++.+.||+|+||+||+|++. +++.||+|++...... ....+.+.+|++++++++||||+++++++..++..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 478999999999999999999975 6899999999754322 22346788999999999999999999999999999999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccC
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDL 958 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~ 958 (1109)
|||+++++|.+++..... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 113 ~e~~~~~~L~~~l~~~~~---~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~ 186 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQGP---LAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASATTD 186 (309)
T ss_dssp EECCCCEEHHHHHHHHCS---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC------
T ss_pred EEecCCCCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCccccc
Confidence 999999999999986543 899999999999999999999 77999999999999999999999999999987653
Q ss_pred CCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 959 PYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 959 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
..........+++.|+|||++.+..++.++||||+|+++|||++|+.||.... ...+........+......+
T Consensus 187 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-----~~~~~~~~~~~~~~~~~~~~-- 259 (309)
T 2h34_A 187 EKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQ-----LSVMGAHINQAIPRPSTVRP-- 259 (309)
T ss_dssp ----------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCH-----HHHHHHHHHSCCCCGGGTST--
T ss_pred cccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCch-----HHHHHHHhccCCCCccccCC--
Confidence 33333345678999999999999999999999999999999999999997532 12222222222221111111
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCC-CHHHHHHHHHHhhhccC
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRP-TMREVIAMMIDARQSVS 1085 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RP-t~~evl~~L~~~~~~~~ 1085 (1109)
.....+.+++.+||+.||++|| +++++++.|+.+.....
T Consensus 260 --------~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~ 299 (309)
T 2h34_A 260 --------GIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATAD 299 (309)
T ss_dssp --------TCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC---
T ss_pred --------CCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhc
Confidence 1123577899999999999999 99999999998876553
No 138
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=4.9e-38 Score=358.24 Aligned_cols=253 Identities=22% Similarity=0.274 Sum_probs=207.3
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNLL 877 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 877 (1109)
.++|++.+.||+|+||+||+|+.+ +++.||||+++.... .....+.+.+|..++..+ +||+|+++++++...+..|+
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 98 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 98 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence 468999999999999999999976 478999999974321 122346688999999988 89999999999999999999
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
||||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 99 v~E~~~gg~L~~~l~~~~~---~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 172 (353)
T 2i0e_A 99 VMEYVNGGDLMYHIQQVGR---FKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI 172 (353)
T ss_dssp EEECCCSCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEeCCCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCcccccc
Confidence 9999999999999986543 899999999999999999999 7799999999999999999999999999998643
Q ss_pred CCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhh
Q 001274 958 LPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKR 1037 (1109)
Q Consensus 958 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1109)
. ........+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.. ..+..............
T Consensus 173 ~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~----~~~~~~~i~~~~~~~p~----- 242 (353)
T 2i0e_A 173 W-DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED----EDELFQSIMEHNVAYPK----- 242 (353)
T ss_dssp C-TTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCCCCCCT-----
T ss_pred c-CCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCC----HHHHHHHHHhCCCCCCC-----
Confidence 1 2223456689999999999999999999999999999999999999997532 22333332222221111
Q ss_pred cchhhcccHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHHHH
Q 001274 1038 LDLSAKRTVEEMTLFLKIALFCSSTSPLNRPT-----MREVIAMMI 1078 (1109)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt-----~~evl~~L~ 1078 (1109)
.....+.+++.+||+.||++||+ ++|++++-+
T Consensus 243 ---------~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h~~ 279 (353)
T 2i0e_A 243 ---------SMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAF 279 (353)
T ss_dssp ---------TSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTSGG
T ss_pred ---------CCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCcc
Confidence 11235778999999999999995 688887754
No 139
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=3.7e-38 Score=372.65 Aligned_cols=253 Identities=28% Similarity=0.427 Sum_probs=207.4
Q ss_pred hcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC-ceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD-SNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~lv~ 879 (1109)
.++|++.++||+|+||+||+|++. ++.||||+++... ..+.|.+|++++++++||||+++++++...+ ..++||
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~ 266 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT 266 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT----TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEE
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch----HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEE
Confidence 357888899999999999999986 7899999997432 4567999999999999999999999987765 689999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++|+|.+++..... ..+++..+..++.||+.||+||| +++|+||||||+||+++.++.+||+|||+++....
T Consensus 267 e~~~~g~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~- 341 (450)
T 1k9a_A 267 EYMAKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS- 341 (450)
T ss_dssp ECCTTCBHHHHHHHHCT-TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC--
T ss_pred EecCCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccc-
Confidence 99999999999986543 23789999999999999999999 77999999999999999999999999999985432
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
......+++.|+|||++.+..++.++|||||||++|||++ |+.||...... .....+........
T Consensus 342 ---~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~-~~~~~i~~~~~~~~---------- 407 (450)
T 1k9a_A 342 ---TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK-DVVPRVEKGYKMDA---------- 407 (450)
T ss_dssp --------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTT-THHHHHHTTCCCCC----------
T ss_pred ---cccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHHHcCCCCCC----------
Confidence 1223367889999999999999999999999999999999 99999865432 22222222111110
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
.......+.+++.+||+.||++|||+.++++.|+.+...
T Consensus 408 ------p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 408 ------PDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp ------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred ------CCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 111224678999999999999999999999999988754
No 140
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=8e-38 Score=369.26 Aligned_cols=253 Identities=25% Similarity=0.397 Sum_probs=209.2
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|.+.+.||+|+||+||+|++. +|+.||||++..... .....+.+.+|+++++.++||||+++++++...+..++||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 67889999999999999999976 799999999974321 1123457889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++|+|.+++...+. +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 96 E~~~gg~L~~~l~~~~~---l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~- 168 (476)
T 2y94_A 96 EYVSGGELFDYICKNGR---LDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSD- 168 (476)
T ss_dssp ECCSSEEHHHHTTSSSS---CCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCT-
T ss_pred eCCCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhccc-
Confidence 99999999999976543 899999999999999999999 78999999999999999999999999999987652
Q ss_pred CCCCccccccccceeccccccCCCC-CccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
.......+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+.. ..................
T Consensus 169 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~----~~~~~~~i~~~~~~~p~~----- 238 (476)
T 2y94_A 169 -GEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDH----VPTLFKKICDGIFYTPQY----- 238 (476)
T ss_dssp -TCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSS----SHHHHHHHHTTCCCCCTT-----
T ss_pred -cccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCC----HHHHHHHHhcCCcCCCcc-----
Confidence 223345689999999999998776 689999999999999999999997532 222222222222111110
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
....+.+++.+||+.||++|||++|++++-+..
T Consensus 239 ---------~s~~~~~Li~~~L~~dP~~Rpt~~eil~hp~~~ 271 (476)
T 2y94_A 239 ---------LNPSVISLLKHMLQVDPMKRATIKDIREHEWFK 271 (476)
T ss_dssp ---------CCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHH
T ss_pred ---------CCHHHHHHHHHHcCCCchhCcCHHHHHhCHHhh
Confidence 113467899999999999999999999986654
No 141
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=5.9e-38 Score=355.25 Aligned_cols=253 Identities=23% Similarity=0.253 Sum_probs=198.0
Q ss_pred cCCCCCceEecCCcceEEEEEe----cCCcEEEEEEeeccCC--CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCce
Q 001274 802 GNFSEGAVIGRGACGTVYKATL----ANGEVIAVKKIKLRGE--GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSN 875 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~----~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 875 (1109)
++|++.+.||+|+||+||+|+. .+++.||+|+++.... .......+.+|++++++++||||+++++++...+..
T Consensus 17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 96 (327)
T 3a62_A 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL 96 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence 5788999999999999999986 4789999999975422 122345678999999999999999999999999999
Q ss_pred EEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccc
Q 001274 876 LLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~ 955 (1109)
++||||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 97 ~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~ 170 (327)
T 3a62_A 97 YLILEYLSGGELFMQLEREGI---FMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKE 170 (327)
T ss_dssp EEEEECCTTEEHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCSCC--
T ss_pred EEEEeCCCCCcHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCCcccc
Confidence 999999999999999976543 889999999999999999999 77999999999999999999999999999975
Q ss_pred ccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhh
Q 001274 956 IDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFD 1035 (1109)
Q Consensus 956 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1109)
.... ........||+.|+|||++.+..++.++||||+||++|||++|+.||.+.. .................
T Consensus 171 ~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~----~~~~~~~i~~~~~~~p~--- 242 (327)
T 3a62_A 171 SIHD-GTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGEN----RKKTIDKILKCKLNLPP--- 242 (327)
T ss_dssp ---------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSS----HHHHHHHHHHTCCCCCT---
T ss_pred cccC-CccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCC----HHHHHHHHHhCCCCCCC---
Confidence 4321 222345679999999999999999999999999999999999999997532 22222322222211111
Q ss_pred hhcchhhcccHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHHHHH
Q 001274 1036 KRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRP-----TMREVIAMMID 1079 (1109)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RP-----t~~evl~~L~~ 1079 (1109)
.....+.+++.+||+.||++|| ++.|+++|-+.
T Consensus 243 -----------~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp~f 280 (327)
T 3a62_A 243 -----------YLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFF 280 (327)
T ss_dssp -----------TSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHSGGG
T ss_pred -----------CCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcCCcc
Confidence 1123577999999999999999 88899987654
No 142
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=4e-38 Score=372.83 Aligned_cols=264 Identities=23% Similarity=0.286 Sum_probs=200.7
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC------
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD------ 873 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 873 (1109)
.++|++.++||+|+||+||+|++. +++.||||++..........+.+.+|+.+++.++||||+++++++...+
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 468999999999999999999865 6899999999755444555678899999999999999999999997653
Q ss_pred ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccc
Q 001274 874 SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLA 953 (1109)
Q Consensus 874 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a 953 (1109)
..|+||||+++ ++.+.+.. .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+|
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~-----~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG~a 211 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLA 211 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCCC
T ss_pred eEEEEEeCCCC-CHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEEee
Confidence 46999999976 56666643 2889999999999999999999 779999999999999999999999999999
Q ss_pred ccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccC-CCch
Q 001274 954 KLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMV-PTSE 1032 (1109)
Q Consensus 954 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~-~~~~ 1032 (1109)
+.... .......+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+.. ..+.+........ +..+
T Consensus 212 ~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~----~~~~~~~i~~~lg~p~~~ 285 (464)
T 3ttj_A 212 RTAGT--SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRD----YIDQWNKVIEQLGTPCPE 285 (464)
T ss_dssp -------CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHHHCSCCHH
T ss_pred eecCC--CcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHHHhcCCCCHH
Confidence 87652 233456789999999999999999999999999999999999999998643 2222222211111 1111
Q ss_pred hhhh--------------------------hc-chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1033 LFDK--------------------------RL-DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1033 ~~~~--------------------------~~-~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
.+.. .. .............+.+++.+||+.||++|||++|+++|-+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~~ 359 (464)
T 3ttj_A 286 FMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYI 359 (464)
T ss_dssp HHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTT
T ss_pred HHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcChhh
Confidence 1100 00 00000111224568899999999999999999999988544
No 143
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=9.5e-38 Score=344.83 Aligned_cols=252 Identities=23% Similarity=0.344 Sum_probs=185.6
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCC-cchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEG-ATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.+.||+|+||+||+|++. +++.||+|++...... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 68999999999999999999864 6899999999754322 233567889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+ ++++.+++..... +++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||.++.....
T Consensus 93 e~~-~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 165 (275)
T 2eue_A 93 EYA-GNELFDYIVQRDK---MSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG 165 (275)
T ss_dssp ECC-CEEHHHHHHTSSS---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCSSCC------
T ss_pred hhc-CCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCCeeccCChHhEEECCCCCEEEeecccceeccCc
Confidence 999 7788888876543 899999999999999999999 779999999999999999999999999999865422
Q ss_pred CCCCccccccccceeccccccCCCC-CccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
.......||+.|+|||++.+..+ +.++||||+|+++|||++|+.||.... .............+....
T Consensus 166 --~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~~~~~~~~~~~~----- 234 (275)
T 2eue_A 166 --NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES----IPVLFKNISNGVYTLPKF----- 234 (275)
T ss_dssp -----------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHTCCCCCTT-----
T ss_pred --ccccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHHhCCCCCCcc-----
Confidence 22344578999999999988776 789999999999999999999997532 222222222222211111
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
....+.+++.+||+.||++|||++|++++-+..
T Consensus 235 ---------~~~~~~~li~~~l~~dP~~Rps~~e~l~h~~f~ 267 (275)
T 2eue_A 235 ---------LSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFK 267 (275)
T ss_dssp ---------SCHHHHHHHHHHSCSSGGGSCCHHHHTTCHHHH
T ss_pred ---------CCHHHHHHHHHHhhcCHhHCCCHHHHhhCCeec
Confidence 123477899999999999999999999886654
No 144
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=6.9e-38 Score=354.25 Aligned_cols=252 Identities=23% Similarity=0.276 Sum_probs=186.1
Q ss_pred CceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC-CCceeeEEEEEEeCCceEEEEEeccC
Q 001274 807 GAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR-HRNIVKLYGFCYHQDSNLLLYEYMEN 884 (1109)
Q Consensus 807 ~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~ 884 (1109)
.+.||+|+||+||+|++. +++.||||++... ....+.+|+.+++.++ ||||+++++++.+.+..++||||+++
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~ 90 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-----MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNG 90 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-----GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh-----hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCC
Confidence 478999999999999975 6899999999732 4567889999999996 99999999999999999999999999
Q ss_pred CCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCC---ceEEeeccccccccCCCC
Q 001274 885 GSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEF---QAHVGDFGLAKLIDLPYS 961 (1109)
Q Consensus 885 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~---~~kl~DFG~a~~~~~~~~ 961 (1109)
|+|.+++..... +++.++..++.||+.||+||| +.+|+||||||+||+++.++ .+||+|||+++.... ..
T Consensus 91 ~~L~~~l~~~~~---~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~-~~ 163 (325)
T 3kn6_A 91 GELFERIKKKKH---FSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPP-DN 163 (325)
T ss_dssp CBHHHHHHHCSC---CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC---
T ss_pred CcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCC-CC
Confidence 999999987643 899999999999999999999 77999999999999997765 899999999986542 22
Q ss_pred CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCccc---CCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 962 KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLEL---GGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 962 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
.......||+.|+|||++.+..++.++||||+||++|||++|+.||..... .....+..........+......
T Consensus 164 ~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--- 240 (325)
T 3kn6_A 164 QPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAW--- 240 (325)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHH---
T ss_pred CcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccc---
Confidence 333456789999999999999999999999999999999999999986432 12333333333333222111110
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
......+.+++.+||+.||++|||++|++++-+..
T Consensus 241 -------~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h~w~~ 275 (325)
T 3kn6_A 241 -------KNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQ 275 (325)
T ss_dssp -------HTSCHHHHHHHHHHHCCCTTTCCCTTTSTTCGGGC
T ss_pred -------cCCCHHHHHHHHHHCCCChhHCCCHHHHhcChhhc
Confidence 11224578999999999999999999999886543
No 145
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=9.6e-38 Score=359.43 Aligned_cols=251 Identities=22% Similarity=0.254 Sum_probs=199.5
Q ss_pred CceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEEeccCC
Q 001274 807 GAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEYMENG 885 (1109)
Q Consensus 807 ~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g 885 (1109)
.+.||+|+||+||+|+.. +|+.||+|+++... ....+.+.+|++++++++||||+++++++...+..++||||+++|
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~ 171 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRG--MKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG 171 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc--cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence 568999999999999864 68999999997432 234577999999999999999999999999999999999999999
Q ss_pred CHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee--CCCCceEEeeccccccccCCCCCC
Q 001274 886 SLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL--DEEFQAHVGDFGLAKLIDLPYSKS 963 (1109)
Q Consensus 886 sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll--~~~~~~kl~DFG~a~~~~~~~~~~ 963 (1109)
+|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+||++ +.++.+||+|||+++..... ..
T Consensus 172 ~L~~~l~~~~~--~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~--~~ 244 (373)
T 2x4f_A 172 ELFDRIIDESY--NLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPR--EK 244 (373)
T ss_dssp EEHHHHHHTGG--GCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTT--CB
T ss_pred cHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCc--cc
Confidence 99999876543 3899999999999999999999 7799999999999999 67789999999999876522 22
Q ss_pred ccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcchhhc
Q 001274 964 MSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDLSAK 1043 (1109)
Q Consensus 964 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1109)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||.+.. ..+.+..............
T Consensus 245 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~----~~~~~~~i~~~~~~~~~~~--------- 311 (373)
T 2x4f_A 245 LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDN----DAETLNNILACRWDLEDEE--------- 311 (373)
T ss_dssp CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHHTCCCSCSGG---------
T ss_pred cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHHhccCCCChhh---------
Confidence 344579999999999999999999999999999999999999997543 2222332222222111100
Q ss_pred ccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1044 RTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1044 ~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
.......+.+++.+||+.||++|||+.|++++-+..
T Consensus 312 -~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~ 347 (373)
T 2x4f_A 312 -FQDISEEAKEFISKLLIKEKSWRISASEALKHPWLS 347 (373)
T ss_dssp -GTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHH
T ss_pred -hccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcC
Confidence 011123578999999999999999999999876543
No 146
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=5.8e-38 Score=358.85 Aligned_cols=268 Identities=22% Similarity=0.242 Sum_probs=206.9
Q ss_pred HHHHhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccC---CCcchhHHHHHHHHHhccCCCCceeeEEEEEEeC
Q 001274 797 LLEATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRG---EGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQ 872 (1109)
Q Consensus 797 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 872 (1109)
+.+..++|++.+.||+|+||+||+|++. +++.||+|++.... ......+.+.+|++++++++||||+++++++.+.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 4456688999999999999999999875 68899999996431 2234567899999999999999999999999999
Q ss_pred CceEEEEEeccCCCHHHHhccCCC-------------------------------------CCCCChHHHHHHHHHHHHH
Q 001274 873 DSNLLLYEYMENGSLGEQLHGNKQ-------------------------------------TCLLDWDARYRIALGAAEG 915 (1109)
Q Consensus 873 ~~~~lv~e~~~~gsL~~~l~~~~~-------------------------------------~~~l~~~~~~~i~~~i~~~ 915 (1109)
+..++||||+++|+|.+++..... ...+++..+..++.||+.|
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~ 180 (345)
T 3hko_A 101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA 180 (345)
T ss_dssp SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 999999999999999999852110 1124677788999999999
Q ss_pred HHHHhhcCCCCeEecCCCCCceeeCCCC--ceEEeeccccccccCCCC---CCccccccccceeccccccC--CCCCccc
Q 001274 916 LCYLHYDCRPHIIHRDIKSNNILLDEEF--QAHVGDFGLAKLIDLPYS---KSMSAIAGSYGYIAPEYAYT--MKVTEKC 988 (1109)
Q Consensus 916 l~~LH~~~~~~ivH~Dlkp~NIll~~~~--~~kl~DFG~a~~~~~~~~---~~~~~~~gt~~y~aPE~~~~--~~~~~~~ 988 (1109)
|+||| +.+|+||||||+||+++.++ .+||+|||+++....... .......||+.|+|||++.+ ..++.++
T Consensus 181 l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~ 257 (345)
T 3hko_A 181 LHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKC 257 (345)
T ss_dssp HHHHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHH
T ss_pred HHHHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHH
Confidence 99999 77999999999999998776 899999999986543221 12345679999999999875 6789999
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCC
Q 001274 989 DIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRP 1068 (1109)
Q Consensus 989 DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RP 1068 (1109)
||||+||++|||++|+.||.+... .+................ .......+.+++.+||+.||++||
T Consensus 258 DiwslG~il~el~~g~~pf~~~~~----~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~li~~~l~~~p~~Rp 323 (345)
T 3hko_A 258 DAWSAGVLLHLLLMGAVPFPGVND----ADTISQVLNKKLCFENPN----------YNVLSPLARDLLSNLLNRNVDERF 323 (345)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHCCCCTTSGG----------GGGSCHHHHHHHHHHSCSCTTTSC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCh----HHHHHHHHhcccccCCcc----------cccCCHHHHHHHHHHcCCChhHCC
Confidence 999999999999999999975432 222222222221111100 001123577999999999999999
Q ss_pred CHHHHHHHHHHhh
Q 001274 1069 TMREVIAMMIDAR 1081 (1109)
Q Consensus 1069 t~~evl~~L~~~~ 1081 (1109)
++.|++++-+...
T Consensus 324 s~~~~l~hp~~~~ 336 (345)
T 3hko_A 324 DAMRALQHPWISQ 336 (345)
T ss_dssp CHHHHHHSHHHHT
T ss_pred CHHHHhcChhhcc
Confidence 9999999876543
No 147
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=3.9e-38 Score=348.75 Aligned_cols=259 Identities=25% Similarity=0.397 Sum_probs=210.4
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEEe
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEY 881 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 881 (1109)
++|++.+.||+|+||+||+|+..+++.||||+++... ...+.+.+|++++++++||||+++++++. .+..++||||
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~ 88 (279)
T 1qpc_A 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS---MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEY 88 (279)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS---SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc---ccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEec
Confidence 5788899999999999999998888899999997432 24567999999999999999999999886 4568999999
Q ss_pred ccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCCC
Q 001274 882 MENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPYS 961 (1109)
Q Consensus 882 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~ 961 (1109)
+++++|.+++..... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.++.......
T Consensus 89 ~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 164 (279)
T 1qpc_A 89 MENGSLVDFLKTPSG-IKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY 164 (279)
T ss_dssp CTTCBHHHHTTSHHH-HTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE
T ss_pred CCCCCHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCccc
Confidence 999999999975421 13899999999999999999999 77999999999999999999999999999987653333
Q ss_pred CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcch
Q 001274 962 KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDL 1040 (1109)
Q Consensus 962 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1109)
.......++..|+|||++.+..++.++||||+|+++|||++ |+.||.+.. ..+............ .
T Consensus 165 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~----~~~~~~~~~~~~~~~---~------ 231 (279)
T 1qpc_A 165 TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT----NPEVIQNLERGYRMV---R------ 231 (279)
T ss_dssp ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC----HHHHHHHHHTTCCCC---C------
T ss_pred ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccC----HHHHHHHHhcccCCC---C------
Confidence 33344567889999999998899999999999999999999 999997533 122222211111100 0
Q ss_pred hhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccC
Q 001274 1041 SAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVS 1085 (1109)
Q Consensus 1041 ~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~ 1085 (1109)
.......+.+++.+||+.||++|||+.++++.|+.......
T Consensus 232 ----~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~ 272 (279)
T 1qpc_A 232 ----PDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATE 272 (279)
T ss_dssp ----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred ----cccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhcc
Confidence 01112457899999999999999999999999999876543
No 148
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=6e-38 Score=356.62 Aligned_cols=257 Identities=21% Similarity=0.245 Sum_probs=206.2
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 878 (1109)
.++|++.+.||+|+||+||+|+++ +++.||||++..... ...+|++++.++ +||||+++++++.+.+..|+|
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv 94 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR------DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVV 94 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC------CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC------ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEE
Confidence 357999999999999999999975 689999999974322 245788888887 799999999999999999999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCC----CceEEeeccccc
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEE----FQAHVGDFGLAK 954 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~----~~~kl~DFG~a~ 954 (1109)
|||+++|+|.+++...+. +++..+..++.||+.||+||| +.+|+||||||+||++..+ +.+||+|||+++
T Consensus 95 ~E~~~gg~L~~~i~~~~~---~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~ 168 (342)
T 2qr7_A 95 TELMKGGELLDKILRQKF---FSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAK 168 (342)
T ss_dssp ECCCCSCBHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCE
T ss_pred EeCCCCCcHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcc
Confidence 999999999999976543 899999999999999999999 7799999999999998433 359999999998
Q ss_pred cccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhh
Q 001274 955 LIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELF 1034 (1109)
Q Consensus 955 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1109)
..... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||.... .....+................
T Consensus 169 ~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~-~~~~~~~~~~i~~~~~~~~~~~ 246 (342)
T 2qr7_A 169 QLRAE-NGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGP-DDTPEEILARIGSGKFSLSGGY 246 (342)
T ss_dssp ECBCT-TCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSST-TSCHHHHHHHHHHCCCCCCSTT
T ss_pred cCcCC-CCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCC-cCCHHHHHHHHccCCcccCccc
Confidence 76532 223345678999999999998889999999999999999999999997532 2333333333333322211111
Q ss_pred hhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1035 DKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
.. .....+.+++.+||+.||++||++.|++++-+...
T Consensus 247 ~~----------~~s~~~~~li~~~L~~dP~~R~t~~~il~hp~~~~ 283 (342)
T 2qr7_A 247 WN----------SVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVH 283 (342)
T ss_dssp TT----------TSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHT
T ss_pred cc----------cCCHHHHHHHHHHCCCChhHCcCHHHHhcCCeecC
Confidence 11 11235778999999999999999999999887643
No 149
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=1.6e-38 Score=359.71 Aligned_cols=265 Identities=22% Similarity=0.360 Sum_probs=211.8
Q ss_pred HHHhcCCCCCceEecCCcceEEEEEec------CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEe
Q 001274 798 LEATGNFSEGAVIGRGACGTVYKATLA------NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYH 871 (1109)
Q Consensus 798 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 871 (1109)
....++|++.+.||+|+||+||+|++. +++.||||++... ........+.+|++++++++||||+++++++..
T Consensus 21 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~ 99 (322)
T 1p4o_A 21 EVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA-ASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ 99 (322)
T ss_dssp BCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTT-SCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS
T ss_pred cchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccc-cCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEcc
Confidence 344578999999999999999999754 3678999999743 223345678999999999999999999999999
Q ss_pred CCceEEEEEeccCCCHHHHhccCCC-------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCc
Q 001274 872 QDSNLLLYEYMENGSLGEQLHGNKQ-------TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQ 944 (1109)
Q Consensus 872 ~~~~~lv~e~~~~gsL~~~l~~~~~-------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 944 (1109)
.+..++||||+++|+|.+++..... ...+++..+..++.||+.||+||| +.+|+||||||+||+++.++.
T Consensus 100 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~NIli~~~~~ 176 (322)
T 1p4o_A 100 GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFT 176 (322)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCC
T ss_pred CCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCccceEEEcCCCe
Confidence 9999999999999999999975321 123789999999999999999999 779999999999999999999
Q ss_pred eEEeeccccccccCCCC-CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHH
Q 001274 945 AHVGDFGLAKLIDLPYS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRR 1022 (1109)
Q Consensus 945 ~kl~DFG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~ 1022 (1109)
+||+|||+++....... .......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||.... ..+....
T Consensus 177 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~----~~~~~~~ 252 (322)
T 1p4o_A 177 VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS----NEQVLRF 252 (322)
T ss_dssp EEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC----HHHHHHH
T ss_pred EEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCC----HHHHHHH
Confidence 99999999986542221 12233457889999999999999999999999999999999 899987543 2222222
Q ss_pred hhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1023 SIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
......+.. .......+.+++.+||+.||++|||+.|++++|++....
T Consensus 253 ~~~~~~~~~-------------~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~ 300 (322)
T 1p4o_A 253 VMEGGLLDK-------------PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEP 300 (322)
T ss_dssp HHTTCCCCC-------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCT
T ss_pred HHcCCcCCC-------------CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhcc
Confidence 222111100 111123577999999999999999999999999887553
No 150
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=2.7e-37 Score=341.63 Aligned_cols=256 Identities=22% Similarity=0.255 Sum_probs=208.3
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.+.||+|+||+||+|++. +++.||+|++..... ...+.+.+|++++++++||||+++++++...+..++||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV--EDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVM 85 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC--SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhcc--chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEE
Confidence 367999999999999999999976 578999999975433 24567899999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee---CCCCceEEeeccccccc
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL---DEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kl~DFG~a~~~ 956 (1109)
||+++++|.+++..... +++..+..++.|++.|++||| +.+|+||||||+||++ +.++.+||+|||.+...
T Consensus 86 e~~~~~~L~~~~~~~~~---~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~ 159 (277)
T 3f3z_A 86 ELCTGGELFERVVHKRV---FRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARF 159 (277)
T ss_dssp ECCCSCBHHHHHHHHCS---CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred eccCCCcHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccceec
Confidence 99999999999876543 899999999999999999999 7799999999999999 78899999999999876
Q ss_pred cCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK 1036 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1109)
.. ........||+.|+|||++.+. ++.++||||+|+++|||++|+.||.... ..+.................
T Consensus 160 ~~--~~~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~----~~~~~~~~~~~~~~~~~~~~- 231 (277)
T 3f3z_A 160 KP--GKMMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPT----DSEVMLKIREGTFTFPEKDW- 231 (277)
T ss_dssp CT--TSCBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCCCCCCHHHH-
T ss_pred cC--ccchhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCC----HHHHHHHHHhCCCCCCchhh-
Confidence 52 2233456799999999988654 8999999999999999999999997533 22222222222221111100
Q ss_pred hcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1037 RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
......+.+++.+|++.||++|||+.|++++-+...
T Consensus 232 ---------~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~~~ 267 (277)
T 3f3z_A 232 ---------LNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEK 267 (277)
T ss_dssp ---------TTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHH
T ss_pred ---------hcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhc
Confidence 011245789999999999999999999998866543
No 151
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=359.49 Aligned_cols=258 Identities=22% Similarity=0.311 Sum_probs=203.2
Q ss_pred hcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCC--CceeeEEEEEEeCCceEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRH--RNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lv 878 (1109)
.++|++.+.||+|+||+||+|+..+++.||||++..........+.+.+|++++++++| +||+++++++..++..++|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 35788999999999999999998889999999998665555556789999999999976 9999999999999999999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccC
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDL 958 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~ 958 (1109)
||+ .+++|.+++..... +++.++..++.||+.||+||| +.+|+||||||+||+++ ++.+||+|||+++....
T Consensus 88 ~e~-~~~~L~~~l~~~~~---~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~ 159 (343)
T 3dbq_A 88 MEC-GNIDLNSWLKKKKS---IDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP 159 (343)
T ss_dssp ECC-CSEEHHHHHHHSCC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC--
T ss_pred EeC-CCCCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcEEEeecccccccCc
Confidence 994 58899999987553 899999999999999999999 77999999999999997 67899999999987653
Q ss_pred CCCC-CccccccccceeccccccC-----------CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhc
Q 001274 959 PYSK-SMSAIAGSYGYIAPEYAYT-----------MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHE 1026 (1109)
Q Consensus 959 ~~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~ 1026 (1109)
.... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.... ............
T Consensus 160 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~---~~~~~~~~~~~~ 236 (343)
T 3dbq_A 160 DTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII---NQISKLHAIIDP 236 (343)
T ss_dssp ----------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCC---SHHHHHHHHHCT
T ss_pred ccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhh---hHHHHHHHHhcC
Confidence 2221 2245679999999999865 678999999999999999999999997532 112222222211
Q ss_pred cCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1027 MVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
.... .+. ......+.+++.+||+.||++|||+.|++++.+...
T Consensus 237 ~~~~--~~~----------~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~hp~~~~ 279 (343)
T 3dbq_A 237 NHEI--EFP----------DIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQI 279 (343)
T ss_dssp TSCC--CCC----------CCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHS
T ss_pred Cccc--CCc----------ccCCHHHHHHHHHHcCCChhHCCCHHHHHhCccccc
Confidence 1100 000 001135779999999999999999999999987654
No 152
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-38 Score=352.29 Aligned_cols=270 Identities=23% Similarity=0.316 Sum_probs=204.7
Q ss_pred HhcCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCC---cchhHHHHHHHHHhccCC---CCceeeEEEEEEeC
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEG---ATADNSFLAEISTLGKIR---HRNIVKLYGFCYHQ 872 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~ 872 (1109)
..++|++.++||+|+||+||+|++ .+++.||||++...... ......+.+|++++++++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 357899999999999999999996 47899999999754321 222356778888877764 99999999999876
Q ss_pred C-----ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEE
Q 001274 873 D-----SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHV 947 (1109)
Q Consensus 873 ~-----~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl 947 (1109)
. ..++||||+. |+|.+++...... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~-~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl 161 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPP-GLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKL 161 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCTT-CSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSCEEE
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccCC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEE
Confidence 5 4689999996 6999999876532 3899999999999999999999 779999999999999999999999
Q ss_pred eeccccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhcc
Q 001274 948 GDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEM 1027 (1109)
Q Consensus 948 ~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~ 1027 (1109)
+|||+++.... ........||+.|+|||++.+..++.++||||+||++|||++|+.||.+............. ...
T Consensus 162 ~Dfg~a~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~-~~~- 237 (308)
T 3g33_A 162 ADFGLARIYSY--QMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDL-IGL- 237 (308)
T ss_dssp CSCSCTTTSTT--CCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHH-HCC-
T ss_pred eeCccccccCC--CcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH-hCC-
Confidence 99999986642 23345568999999999999999999999999999999999999999764322222222221 110
Q ss_pred CCCchhhhhhcc-------hh-----hcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1028 VPTSELFDKRLD-------LS-----AKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1028 ~~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
+....+..... .. .....+....+.+++.+|++.||++|||+.|++++-+.
T Consensus 238 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h~~~ 300 (308)
T 3g33_A 238 -PPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYL 300 (308)
T ss_dssp -CCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTC
T ss_pred -CChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcCccc
Confidence 01111100000 00 00011223467899999999999999999999987543
No 153
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=5.8e-39 Score=364.10 Aligned_cols=277 Identities=24% Similarity=0.323 Sum_probs=207.0
Q ss_pred cCCCCCceEecCCcceEEEEEe-----cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEe--CCc
Q 001274 802 GNFSEGAVIGRGACGTVYKATL-----ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYH--QDS 874 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~ 874 (1109)
++|++.+.||+|+||+||+|++ .+++.||||++... .....+.+.+|++++++++||||+++++++.. ...
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 100 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS--GPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQS 100 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC--CHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCce
Confidence 5788999999999999999984 36889999998643 23445678999999999999999999999874 456
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
.++||||+++++|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.++
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~ 175 (327)
T 3lxl_A 101 LRLVMEYLPSGCLRDFLQRHRA--RLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAK 175 (327)
T ss_dssp EEEEEECCTTCBHHHHHHHHGG--GCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGGCE
T ss_pred EEEEEeecCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEcccccce
Confidence 7899999999999999976443 3899999999999999999999 7799999999999999999999999999998
Q ss_pred cccCCCCC--CccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccC----------CcHHHHHHH
Q 001274 955 LIDLPYSK--SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELG----------GDLVTWVRR 1022 (1109)
Q Consensus 955 ~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~----------~~~~~~~~~ 1022 (1109)
........ ......+|..|+|||++.+..++.++||||+|+++|||++|+.||...... ......+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (327)
T 3lxl_A 176 LLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLE 255 (327)
T ss_dssp ECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHH
T ss_pred ecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHH
Confidence 76432221 223456888899999999999999999999999999999999998643210 000000111
Q ss_pred hhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCCCCCCCCccccc
Q 001274 1023 SIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSDYPSSPTSETPL 1097 (1109)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~~~~~~~~~~~ 1097 (1109)
....... ..........+.+++.+||+.||++|||++|++++|+.+..........+.+..|.
T Consensus 256 ~~~~~~~------------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~~~~~~~~~p~ 318 (327)
T 3lxl_A 256 LLEEGQR------------LPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSRGCETHAFTAHPE 318 (327)
T ss_dssp HHHTTCC------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-----------------
T ss_pred HhhcccC------------CCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhcCccccccccCcC
Confidence 1110000 00111223467899999999999999999999999999887766555544444333
No 154
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=2.1e-37 Score=345.99 Aligned_cols=264 Identities=20% Similarity=0.276 Sum_probs=205.5
Q ss_pred HhcCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEE-EeCCceEE
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFC-YHQDSNLL 877 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~l 877 (1109)
..++|++.+.||+|+||+||+|++ .+++.||||++.... ....+.+|+++++.++|++++..++++ ...+..++
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l 82 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT----KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM 82 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc----cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEE
Confidence 347899999999999999999996 478999999876432 234588999999999887766665555 66777899
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee---CCCCceEEeeccccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL---DEEFQAHVGDFGLAK 954 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kl~DFG~a~ 954 (1109)
||||+ +++|.+++...... +++..+..++.||+.||+||| +.+|+||||||+||++ +.++.+||+|||+++
T Consensus 83 v~e~~-~~~L~~~~~~~~~~--~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~ 156 (296)
T 4hgt_A 83 VMELL-GPSLEDLFNFCSRK--FSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK 156 (296)
T ss_dssp EEECC-CCBHHHHHHHTTSC--CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTTCE
T ss_pred EEEcc-CCCHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCccce
Confidence 99999 99999999854433 899999999999999999999 7799999999999999 789999999999998
Q ss_pred cccCCCC------CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCC--cH-HHHHHHhhh
Q 001274 955 LIDLPYS------KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGG--DL-VTWVRRSIH 1025 (1109)
Q Consensus 955 ~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~--~~-~~~~~~~~~ 1025 (1109)
....... .......||+.|+|||++.+..++.++||||+||++|||++|+.||....... .. .........
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 236 (296)
T 4hgt_A 157 KYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMS 236 (296)
T ss_dssp ECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHH
T ss_pred eccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhccccc
Confidence 7653322 12235679999999999999999999999999999999999999998654222 11 111111111
Q ss_pred ccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCC
Q 001274 1026 EMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSD 1086 (1109)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~ 1086 (1109)
. + .+... ......+.+++.+||+.||++|||++++++.|+.+......
T Consensus 237 ~--~-~~~~~----------~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~~ 284 (296)
T 4hgt_A 237 T--P-IEVLC----------KGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF 284 (296)
T ss_dssp S--C-HHHHT----------TTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHTC
T ss_pred c--h-hhhhh----------ccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 1 0 00000 01124678999999999999999999999999998876643
No 155
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=1.4e-37 Score=361.55 Aligned_cols=254 Identities=22% Similarity=0.253 Sum_probs=195.1
Q ss_pred cCCCCC-ceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhc-cCCCCceeeEEEEEEe----CCc
Q 001274 802 GNFSEG-AVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLG-KIRHRNIVKLYGFCYH----QDS 874 (1109)
Q Consensus 802 ~~~~~~-~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~-~l~h~niv~l~~~~~~----~~~ 874 (1109)
++|.+. +.||+|+||+||+|++. +++.||||++. ....+.+|++++. ..+||||+++++++.. .+.
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~-------~~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~ 133 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQ-------DCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKC 133 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE-------CSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeC-------cchhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcE
Confidence 456665 68999999999999875 68999999996 2345778888874 4589999999999876 556
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC---CCceEEeecc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE---EFQAHVGDFG 951 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kl~DFG 951 (1109)
.|+||||+++|+|.+++..... ..+++..+..++.||+.||+||| +.+|+||||||+||+++. ++.+||+|||
T Consensus 134 ~~lv~E~~~gg~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG 209 (400)
T 1nxk_A 134 LLIVMECLDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFG 209 (400)
T ss_dssp EEEEEECCCSEEHHHHHHCC----CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSTTCCEEECCCT
T ss_pred EEEEEEeCCCCcHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcceEEEecCCCCccEEEEecc
Confidence 7999999999999999987542 24899999999999999999999 779999999999999987 7899999999
Q ss_pred ccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCC---cHHHHHHHhhhccC
Q 001274 952 LAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGG---DLVTWVRRSIHEMV 1028 (1109)
Q Consensus 952 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~---~~~~~~~~~~~~~~ 1028 (1109)
+++.... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||....... .....+... ..
T Consensus 210 ~a~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~---~~ 284 (400)
T 1nxk_A 210 FAKETTS--HNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMG---QY 284 (400)
T ss_dssp TCEECC-------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHT---CC
T ss_pred cccccCC--CCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcC---cc
Confidence 9986542 223345678999999999999999999999999999999999999997654221 122222211 11
Q ss_pred CCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1029 PTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
...... .......+.+++.+||+.||++|||+.|++++-+...
T Consensus 285 ~~~~~~----------~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~ 327 (400)
T 1nxk_A 285 EFPNPE----------WSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQ 327 (400)
T ss_dssp CCCTTT----------TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHT
T ss_pred cCCCcc----------cccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccccC
Confidence 100000 0111235779999999999999999999999977653
No 156
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3.4e-38 Score=366.51 Aligned_cols=269 Identities=25% Similarity=0.323 Sum_probs=197.0
Q ss_pred HhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC-CCceeeEEEEEEeCC--ce
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR-HRNIVKLYGFCYHQD--SN 875 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~--~~ 875 (1109)
..++|++.+.||+|+||+||+|++. +++.||||++..........+.+.+|+.+++++. ||||+++++++...+ ..
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~ 86 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV 86 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence 4578999999999999999999865 6899999999755455556677889999999997 999999999998654 67
Q ss_pred EEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccc
Q 001274 876 LLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~ 955 (1109)
|+||||++ |+|.+++... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+|+.
T Consensus 87 ~lv~e~~~-~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 158 (388)
T 3oz6_A 87 YLVFDYME-TDLHAVIRAN----ILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRS 158 (388)
T ss_dssp EEEEECCS-EEHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEecccC-cCHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCccccc
Confidence 99999997 6899998764 2899999999999999999999 77999999999999999999999999999986
Q ss_pred ccCC--------------------CCCCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCC
Q 001274 956 IDLP--------------------YSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGG 1014 (1109)
Q Consensus 956 ~~~~--------------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~ 1014 (1109)
.... ........+||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~ 238 (388)
T 3oz6_A 159 FVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMN 238 (388)
T ss_dssp SSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred ccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 5321 1112244689999999999886 678999999999999999999999998643222
Q ss_pred cHHHHHHHhhhccCCCchhhhhhcc-----------h---------------------hhcccHHHHHHHHHHHHhccCC
Q 001274 1015 DLVTWVRRSIHEMVPTSELFDKRLD-----------L---------------------SAKRTVEEMTLFLKIALFCSST 1062 (1109)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---------------------~~~~~~~~~~~~~~li~~cl~~ 1062 (1109)
.+...+. .. ..|..+.+..... . ...........+.+++.+||+.
T Consensus 239 ~~~~i~~-~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~ 315 (388)
T 3oz6_A 239 QLERIIG-VI--DFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQF 315 (388)
T ss_dssp HHHHHHH-HH--CCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCS
T ss_pred HHHHHHH-hc--CCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhcc
Confidence 1111111 11 1111111100000 0 0000001134578999999999
Q ss_pred CCCCCCCHHHHHHHHHH
Q 001274 1063 SPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1063 dP~~RPt~~evl~~L~~ 1079 (1109)
||++|||++|+++|-+.
T Consensus 316 dP~~R~t~~e~l~Hp~~ 332 (388)
T 3oz6_A 316 NPNKRISANDALKHPFV 332 (388)
T ss_dssp SGGGSCCHHHHTTSTTT
T ss_pred CcccCCCHHHHhCCHHH
Confidence 99999999999998553
No 157
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=4.9e-38 Score=356.19 Aligned_cols=266 Identities=22% Similarity=0.263 Sum_probs=210.1
Q ss_pred HHHHHHhcCCCCC-ceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEe
Q 001274 795 HNLLEATGNFSEG-AVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYH 871 (1109)
Q Consensus 795 ~~~~~~~~~~~~~-~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 871 (1109)
.......++|.+. +.||+|+||+||+|+.. +++.||||+++...........+.+|+.+++++ +||||+++++++..
T Consensus 21 ~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~ 100 (327)
T 3lm5_A 21 QSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYEN 100 (327)
T ss_dssp BCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEEC
T ss_pred HHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEe
Confidence 3344555677777 89999999999999876 689999999986655555567899999999999 56999999999999
Q ss_pred CCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC---CCceEEe
Q 001274 872 QDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE---EFQAHVG 948 (1109)
Q Consensus 872 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kl~ 948 (1109)
.+..++||||+++|+|.+++..... ..+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+||+
T Consensus 101 ~~~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~kL~ 176 (327)
T 3lm5_A 101 TSEIILILEYAAGGEIFSLCLPELA-EMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIV 176 (327)
T ss_dssp SSEEEEEEECCTTEEGGGGGSSCC--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEEEC
T ss_pred CCeEEEEEEecCCCcHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEEEe
Confidence 9999999999999999999865432 24899999999999999999999 779999999999999987 7899999
Q ss_pred eccccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccC
Q 001274 949 DFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMV 1028 (1109)
Q Consensus 949 DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~ 1028 (1109)
|||+++..... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||..... .+..........
T Consensus 177 Dfg~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~----~~~~~~i~~~~~ 250 (327)
T 3lm5_A 177 DFGMSRKIGHA--CELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDN----QETYLNISQVNV 250 (327)
T ss_dssp CGGGCEEC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHTCC
T ss_pred eCccccccCCc--cccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc----hHHHHHHHhccc
Confidence 99999876522 223456799999999999999999999999999999999999999975332 222221111111
Q ss_pred CCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1029 PTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
...... .......+.+++.+||+.||++|||++|++++-+..
T Consensus 251 ~~~~~~----------~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h~~~~ 292 (327)
T 3lm5_A 251 DYSEET----------FSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWLQ 292 (327)
T ss_dssp CCCTTT----------TTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCGGGC
T ss_pred ccCchh----------hcccCHHHHHHHHHHcCCChhhCcCHHHHhCCHhhc
Confidence 111100 111223577999999999999999999999986653
No 158
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=4.4e-38 Score=350.09 Aligned_cols=259 Identities=24% Similarity=0.374 Sum_probs=214.4
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.+.||+|+||+||+|++. +++.||+|++... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus 12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 88 (288)
T 3kfa_A 12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED---TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT 88 (288)
T ss_dssp GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC---STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEE
Confidence 467888999999999999999976 4889999999732 335678999999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++++|.+++..... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.++.....
T Consensus 89 e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~ 164 (288)
T 3kfa_A 89 EFMTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD 164 (288)
T ss_dssp ECCTTEEHHHHHHHCCT-TTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSS
T ss_pred EcCCCCcHHHHHHhccc-CCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCEEEccCccceeccCC
Confidence 99999999999976443 24899999999999999999999 679999999999999999999999999999876544
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
.........+|+.|+|||++.+..++.++||||+|+++|+|++ |..||...... .....+........
T Consensus 165 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~-~~~~~~~~~~~~~~---------- 233 (288)
T 3kfa_A 165 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS-QVYELLEKDYRMER---------- 233 (288)
T ss_dssp SSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG-GHHHHHHTTCCCCC----------
T ss_pred ccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHHhccCCCCC----------
Confidence 3333445567889999999999999999999999999999999 99999764322 22222222111110
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
.......+.+++.+|++.||++|||++++++.|+.....
T Consensus 234 ------~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~ 272 (288)
T 3kfa_A 234 ------PEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 272 (288)
T ss_dssp ------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ------CCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence 111124578999999999999999999999999887664
No 159
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-38 Score=357.86 Aligned_cols=248 Identities=24% Similarity=0.303 Sum_probs=205.9
Q ss_pred HhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcc------hhHHHHHHHHHhccCCCCceeeEEEEEEeC
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGAT------ADNSFLAEISTLGKIRHRNIVKLYGFCYHQ 872 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 872 (1109)
..++|++.+.||+|+||+||+|++. +++.||||+++....... ....+.+|++++++++||||+++++++...
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 3468999999999999999999864 689999999975532211 334677899999999999999999999999
Q ss_pred CceEEEEEeccCC-CHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecc
Q 001274 873 DSNLLLYEYMENG-SLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFG 951 (1109)
Q Consensus 873 ~~~~lv~e~~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG 951 (1109)
+..++||||+.+| +|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~~~~---l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg 175 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDRHPR---LDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFG 175 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHTCCC---CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCT
T ss_pred CEEEEEEEeCCCCccHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEeecc
Confidence 9999999999777 99999987654 899999999999999999999 7799999999999999999999999999
Q ss_pred ccccccCCCCCCccccccccceeccccccCCCC-CccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCC
Q 001274 952 LAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPT 1030 (1109)
Q Consensus 952 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1109)
+++.... ........||+.|+|||++.+..+ +.++||||+||++|||++|+.||...... .......
T Consensus 176 ~a~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~----------~~~~~~~ 243 (335)
T 3dls_A 176 SAAYLER--GKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET----------VEAAIHP 243 (335)
T ss_dssp TCEECCT--TCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG----------TTTCCCC
T ss_pred cceECCC--CCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH----------HhhccCC
Confidence 9987652 223345679999999999998887 78999999999999999999999753210 0000000
Q ss_pred chhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1031 SELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
.. .....+.+++.+||+.||++|||++|++++-+.
T Consensus 244 ----------~~----~~~~~l~~li~~~L~~dP~~Rps~~ell~hp~~ 278 (335)
T 3dls_A 244 ----------PY----LVSKELMSLVSGLLQPVPERRTTLEKLVTDPWV 278 (335)
T ss_dssp ----------SS----CCCHHHHHHHHHHTCSSGGGSCCHHHHHHCTTT
T ss_pred ----------Cc----ccCHHHHHHHHHHccCChhhCcCHHHHhcCccc
Confidence 00 012357799999999999999999999998654
No 160
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=3.2e-38 Score=356.24 Aligned_cols=272 Identities=25% Similarity=0.381 Sum_probs=216.3
Q ss_pred CHHHHHHHhcCCCCCceEecCCcceEEEEEe------cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeE
Q 001274 793 KYHNLLEATGNFSEGAVIGRGACGTVYKATL------ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKL 865 (1109)
Q Consensus 793 ~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l 865 (1109)
...++....++|++.+.||+|+||+||+|++ .+++.||||+++.. ......+.+.+|+++++++ +||||+++
T Consensus 18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG-ATHSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccC-CCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 3344444567899999999999999999974 24688999999743 2333456789999999999 79999999
Q ss_pred EEEEEeCC-ceEEEEEeccCCCHHHHhccCCCC-------------CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecC
Q 001274 866 YGFCYHQD-SNLLLYEYMENGSLGEQLHGNKQT-------------CLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRD 931 (1109)
Q Consensus 866 ~~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~~-------------~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D 931 (1109)
++++...+ ..++||||+++|+|.+++...... ..+++..+..++.|++.||.||| +.+|+|||
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~d 173 (316)
T 2xir_A 97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRD 173 (316)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCccccc
Confidence 99988765 489999999999999999875431 22789999999999999999999 77999999
Q ss_pred CCCCceeeCCCCceEEeeccccccccCCCC-CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCC
Q 001274 932 IKSNNILLDEEFQAHVGDFGLAKLIDLPYS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQS 1009 (1109)
Q Consensus 932 lkp~NIll~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~ 1009 (1109)
|||+||+++.++.+||+|||+++....... .......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||.+
T Consensus 174 ikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~ 253 (316)
T 2xir_A 174 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 253 (316)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred CccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcc
Confidence 999999999999999999999986643222 12234567889999999999999999999999999999998 9999986
Q ss_pred cccCCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1010 LELGGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
..........+........ . ......+.+++.+||+.||++|||+.|++++|+.+.+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~--~--------------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 312 (316)
T 2xir_A 254 VKIDEEFCRRLKEGTRMRA--P--------------DYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 312 (316)
T ss_dssp CCCSHHHHHHHHHTCCCCC--C--------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhccCccCCC--C--------------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence 5433333333322111111 0 011235779999999999999999999999999987654
No 161
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.5e-37 Score=352.99 Aligned_cols=262 Identities=24% Similarity=0.403 Sum_probs=204.0
Q ss_pred cCCCCCceEecCCcceEEEEEecC-----CcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLAN-----GEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 876 (1109)
.+|+..+.||+|+||+||+|++.. +..||||+++... .......+.+|++++++++||||+++++++...+..+
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 122 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY-TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM 122 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence 467778999999999999998642 2469999997432 3344567899999999999999999999999999999
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
+||||+++|+|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 123 lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~ 197 (333)
T 1mqb_A 123 IITEYMENGALDKFLREKDG--EFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVL 197 (333)
T ss_dssp EEEECCTTEEHHHHHHHTTT--CSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred EEEeCCCCCcHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcchhh
Confidence 99999999999999986543 3899999999999999999999 779999999999999999999999999999876
Q ss_pred cCCCCC--CccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchh
Q 001274 957 DLPYSK--SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSEL 1033 (1109)
Q Consensus 957 ~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1109)
...... ......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||.... ..+.............
T Consensus 198 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~----~~~~~~~~~~~~~~~~-- 271 (333)
T 1mqb_A 198 EDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS----NHEVMKAINDGFRLPT-- 271 (333)
T ss_dssp -------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC----HHHHHHHHHTTCCCCC--
T ss_pred ccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCC----HHHHHHHHHCCCcCCC--
Confidence 532211 1223356789999999999999999999999999999999 999997543 1222222111111000
Q ss_pred hhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCC
Q 001274 1034 FDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSD 1086 (1109)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~ 1086 (1109)
.......+.+++.+||+.||++||++++++++|+++......
T Consensus 272 -----------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~ 313 (333)
T 1mqb_A 272 -----------PMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDS 313 (333)
T ss_dssp -----------CTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGG
T ss_pred -----------cccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcchh
Confidence 111123578999999999999999999999999988765433
No 162
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=3.3e-38 Score=357.90 Aligned_cols=269 Identities=21% Similarity=0.311 Sum_probs=197.8
Q ss_pred HhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEE
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 878 (1109)
..++|++.++||+|+||+||+|++. +++.||||+++.........+.+.+|++++++++||||+++++++...+..++|
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 111 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLI 111 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEE
Confidence 3468999999999999999999865 789999999976544444456788999999999999999999999999999999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee-----CCCCceEEeecccc
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL-----DEEFQAHVGDFGLA 953 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll-----~~~~~~kl~DFG~a 953 (1109)
|||++ |+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||++ +.++.+||+|||++
T Consensus 112 ~e~~~-~~L~~~~~~~~~---~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a 184 (329)
T 3gbz_A 112 FEYAE-NDLKKYMDKNPD---VSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLA 184 (329)
T ss_dssp EECCS-EEHHHHHHHCTT---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECCTTHH
T ss_pred EecCC-CCHHHHHhhcCC---CCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECcCCCc
Confidence 99997 599999987654 899999999999999999999 7799999999999999 45556999999999
Q ss_pred ccccCCCCCCccccccccceeccccccCC-CCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCch
Q 001274 954 KLIDLPYSKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSE 1032 (1109)
Q Consensus 954 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1109)
+..... ........+|+.|+|||++.+. .++.++||||+||++|||++|+.||......+.......... .+...
T Consensus 185 ~~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~---~~~~~ 260 (329)
T 3gbz_A 185 RAFGIP-IRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLG---LPDDT 260 (329)
T ss_dssp HHHC------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHC---CCCTT
T ss_pred cccCCc-ccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhC---CCchh
Confidence 876522 2223445789999999999875 489999999999999999999999976432222222222111 01110
Q ss_pred hhhh---------hcch------hhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1033 LFDK---------RLDL------SAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1033 ~~~~---------~~~~------~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
.+.. .... ...........+.+++.+||+.||++|||++|++++-+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f 322 (329)
T 3gbz_A 261 TWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEHPYF 322 (329)
T ss_dssp TSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGG
T ss_pred hhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCCccc
Confidence 0000 0000 000000122457899999999999999999999987654
No 163
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=8.4e-38 Score=373.35 Aligned_cols=258 Identities=25% Similarity=0.283 Sum_probs=210.5
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.+.||+|+||+||+|+.. +|+.||||++..... .......+.+|++++++++||||+++++++.+.+..|+||
T Consensus 184 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 263 (576)
T 2acx_A 184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVL 263 (576)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEE
Confidence 57888899999999999999975 799999999964321 1223456889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||++||+|.+++..... ..+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 264 Ey~~gg~L~~~l~~~~~-~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~- 338 (576)
T 2acx_A 264 TLMNGGDLKFHIYHMGQ-AGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPE- 338 (576)
T ss_dssp CCCCSCBHHHHHHSSSS-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCT-
T ss_pred EcCCCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeEEEecccceeccc-
Confidence 99999999999976543 23899999999999999999999 77999999999999999999999999999987642
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
.......+||+.|+|||++.+..++.++||||+||++|||++|+.||........................ .
T Consensus 339 -~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~~~p----~--- 410 (576)
T 2acx_A 339 -GQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYS----E--- 410 (576)
T ss_dssp -TCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCCCCC----T---
T ss_pred -CccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccccCC----c---
Confidence 22334568999999999999999999999999999999999999999865433333332222222111111 0
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHHHHH
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRP-----TMREVIAMMID 1079 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RP-----t~~evl~~L~~ 1079 (1109)
.....+.+++.+||+.||++|| +++|+++|-+.
T Consensus 411 -------~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~HpfF 448 (576)
T 2acx_A 411 -------RFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLF 448 (576)
T ss_dssp -------TSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTSGGG
T ss_pred -------cCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhChhh
Confidence 1123577999999999999999 88999988554
No 164
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=1.3e-37 Score=357.13 Aligned_cols=251 Identities=23% Similarity=0.264 Sum_probs=196.1
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCC-cchhHHHHHHHHH-hccCCCCceeeEEEEEEeCCceEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEG-ATADNSFLAEIST-LGKIRHRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~lv 878 (1109)
++|++.+.||+|+||+||+|+.+ +++.||||+++..... ......+.+|..+ ++.++||||+++++++...+..|+|
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv 117 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFV 117 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEE
Confidence 57889999999999999999976 5889999999754322 2234556777777 5778999999999999999999999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccC
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDL 958 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~ 958 (1109)
|||+++|+|.+++..... +++..++.++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 118 ~E~~~gg~L~~~l~~~~~---~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~ 191 (373)
T 2r5t_A 118 LDYINGGELFYHLQRERC---FLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE 191 (373)
T ss_dssp EECCCSCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC
T ss_pred EeCCCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCcccccccc
Confidence 999999999999976543 899999999999999999999 77999999999999999999999999999986432
Q ss_pred CCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 959 PYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 959 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
........+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.. ..+..............
T Consensus 192 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~----~~~~~~~i~~~~~~~~~------ 260 (373)
T 2r5t_A 192 -HNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN----TAEMYDNILNKPLQLKP------ 260 (373)
T ss_dssp -CCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSB----HHHHHHHHHHSCCCCCS------
T ss_pred -CCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC----HHHHHHHHHhcccCCCC------
Confidence 2233456789999999999999999999999999999999999999997533 22222322222211110
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHH----HHHHHH
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMR----EVIAMM 1077 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~----evl~~L 1077 (1109)
.....+.+++.+||+.||++||++. ++.++-
T Consensus 261 --------~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i~~h~ 295 (373)
T 2r5t_A 261 --------NITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHV 295 (373)
T ss_dssp --------SSCHHHHHHHHHHTCSSGGGSTTTTTTHHHHHTSG
T ss_pred --------CCCHHHHHHHHHHcccCHHhCCCCCCCHHHHhCCc
Confidence 1123567899999999999999974 555543
No 165
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=8.4e-38 Score=369.88 Aligned_cols=253 Identities=21% Similarity=0.250 Sum_probs=199.0
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccC-CCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRG-EGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.++||+|+||+||+|+.. +++.||||+++... ........+.+|+++++.++||||+++++++...+..++||
T Consensus 148 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~ 227 (446)
T 4ejn_A 148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVM 227 (446)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEEE
T ss_pred HHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEE
Confidence 57899999999999999999865 68999999997432 12233456789999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCC-CCeEecCCCCCceeeCCCCceEEeeccccccccC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCR-PHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDL 958 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~ 958 (1109)
||+++|+|.+++..... +++..+..++.||+.||+||| + .+|+||||||+|||++.++.+||+|||+|+....
T Consensus 228 e~~~~~~L~~~l~~~~~---~~~~~~~~~~~qi~~aL~~LH---~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 301 (446)
T 4ejn_A 228 EYANGGELFFHLSRERV---FSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK 301 (446)
T ss_dssp CCCSSCBHHHHHHHHSC---CCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC
T ss_pred eeCCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHh---hcCCEEECCCCHHHEEECCCCCEEEccCCCceeccC
Confidence 99999999999976543 899999999999999999999 5 6999999999999999999999999999986432
Q ss_pred CCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 959 PYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 959 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
........+||+.|+|||++.+..++.++||||+||++|||++|+.||.... .................
T Consensus 302 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~----~~~~~~~i~~~~~~~p~------ 370 (446)
T 4ejn_A 302 -DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD----HEKLFELILMEEIRFPR------ 370 (446)
T ss_dssp ------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCCCCCCT------
T ss_pred -CCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCC----HHHHHHHHHhCCCCCCc------
Confidence 2233455789999999999999999999999999999999999999997532 22222322222221111
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHHHHH
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRP-----TMREVIAMMID 1079 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RP-----t~~evl~~L~~ 1079 (1109)
.....+.+++.+||+.||++|| +++|+++|-+.
T Consensus 371 --------~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~hp~f 408 (446)
T 4ejn_A 371 --------TLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFF 408 (446)
T ss_dssp --------TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGG
T ss_pred --------cCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhCccc
Confidence 1123577999999999999999 99999987554
No 166
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=1.3e-37 Score=354.03 Aligned_cols=264 Identities=23% Similarity=0.378 Sum_probs=211.5
Q ss_pred cCCCCCceEecCCcceEEEEEec--------CCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeC
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA--------NGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQ 872 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 872 (1109)
++|++.+.||+|+||+||+|++. +++.||||+++.. ......+.+.+|+++++++ +||||+++++++...
T Consensus 35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD-ATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccC-CcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 68889999999999999999863 4678999999743 2334456789999999999 899999999999999
Q ss_pred CceEEEEEeccCCCHHHHhccCCC-------------CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee
Q 001274 873 DSNLLLYEYMENGSLGEQLHGNKQ-------------TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL 939 (1109)
Q Consensus 873 ~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll 939 (1109)
+..++||||+++|+|.+++..... ...+++..+..++.||+.||+||| +.+|+||||||+||++
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll 190 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLV 190 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEE
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceEEE
Confidence 999999999999999999986542 123889999999999999999999 7799999999999999
Q ss_pred CCCCceEEeeccccccccCCCC-CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHH
Q 001274 940 DEEFQAHVGDFGLAKLIDLPYS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLV 1017 (1109)
Q Consensus 940 ~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~ 1017 (1109)
+.++.+||+|||+++....... .......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||.+.. ..
T Consensus 191 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~----~~ 266 (334)
T 2pvf_A 191 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP----VE 266 (334)
T ss_dssp CTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC----HH
T ss_pred cCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCC----HH
Confidence 9999999999999987653221 12234467889999999998899999999999999999999 999997543 22
Q ss_pred HHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCC
Q 001274 1018 TWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSD 1086 (1109)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~ 1086 (1109)
+............ ........+.+++.+||+.||++|||+.|++++|+.+......
T Consensus 267 ~~~~~~~~~~~~~-------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~~ 322 (334)
T 2pvf_A 267 ELFKLLKEGHRMD-------------KPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTTN 322 (334)
T ss_dssp HHHHHHHHTCCCC-------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCCCCC-------------CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcccc
Confidence 2222211111100 0111123578999999999999999999999999999776543
No 167
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=1e-37 Score=345.70 Aligned_cols=259 Identities=25% Similarity=0.389 Sum_probs=205.6
Q ss_pred hcCCCCCceEecCCcceEEEEEecC----CcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLAN----GEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 876 (1109)
.++|++.+.||+|+||+||+|++.+ +..||||++.... .....+.+.+|++++++++||||+++++++.. +..+
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~ 88 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC-TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTW 88 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS-CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc-CchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCE
Confidence 3678889999999999999998542 3469999987432 33456789999999999999999999999765 4578
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
+||||+++++|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.++..
T Consensus 89 ~v~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 163 (281)
T 3cc6_A 89 IIMELYPYGELGHYLERNKN--SLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYI 163 (281)
T ss_dssp EEEECCTTCBHHHHHHHHTT--TCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC
T ss_pred EEEecCCCCCHHHHHHhccc--cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCccc
Confidence 99999999999999976543 3899999999999999999999 779999999999999999999999999999876
Q ss_pred cCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhh
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFD 1035 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1109)
............+|+.|+|||++.+..++.++||||+|+++|||++ |+.||...... .....+..... .+...
T Consensus 164 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~-~~~~~~~~~~~--~~~~~--- 237 (281)
T 3cc6_A 164 EDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENK-DVIGVLEKGDR--LPKPD--- 237 (281)
T ss_dssp ---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGG-GHHHHHHHTCC--CCCCT---
T ss_pred ccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChH-HHHHHHhcCCC--CCCCC---
Confidence 5433333344567889999999998999999999999999999998 99999754322 22222222111 11110
Q ss_pred hhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1036 KRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
.....+.+++.+||+.||++||++.|++++|+.+.+.
T Consensus 238 -----------~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~ 274 (281)
T 3cc6_A 238 -----------LCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQM 274 (281)
T ss_dssp -----------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHh
Confidence 1123577999999999999999999999999987654
No 168
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=7.4e-38 Score=352.76 Aligned_cols=267 Identities=24% Similarity=0.393 Sum_probs=202.0
Q ss_pred HhcCCCCCceEecCCcceEEEEEec----CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCc-
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATLA----NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDS- 874 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~- 874 (1109)
..++|.+.+.||+|+||+||+|++. .++.||||+++.........+.+.+|++++++++||||+++++++...+.
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~ 111 (313)
T 3brb_A 32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ 111 (313)
T ss_dssp CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence 3468899999999999999999754 34589999998665555556789999999999999999999999987653
Q ss_pred ----eEEEEEeccCCCHHHHhccCC---CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEE
Q 001274 875 ----NLLLYEYMENGSLGEQLHGNK---QTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHV 947 (1109)
Q Consensus 875 ----~~lv~e~~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl 947 (1109)
.++||||+++|+|.+++.... ....+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||
T Consensus 112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kl 188 (313)
T 3brb_A 112 GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMTVCV 188 (313)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSCEEE
T ss_pred CCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEE
Confidence 499999999999999985321 2234899999999999999999999 789999999999999999999999
Q ss_pred eeccccccccCCCC-CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhh
Q 001274 948 GDFGLAKLIDLPYS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIH 1025 (1109)
Q Consensus 948 ~DFG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~ 1025 (1109)
+|||+++....... .......+++.|+|||++.+..++.++||||||+++|||++ |..||...... .....+.....
T Consensus 189 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~-~~~~~~~~~~~ 267 (313)
T 3brb_A 189 ADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH-EMYDYLLHGHR 267 (313)
T ss_dssp CSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG-GHHHHHHTTCC
T ss_pred eecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHH-HHHHHHHcCCC
Confidence 99999986643221 22234467889999999999999999999999999999999 88898764322 22222211111
Q ss_pred ccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCC
Q 001274 1026 EMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSD 1086 (1109)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~ 1086 (1109)
... .......+.+++.+||+.||++|||+.+++++|+.+....++
T Consensus 268 ~~~----------------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp~ 312 (313)
T 3brb_A 268 LKQ----------------PEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPD 312 (313)
T ss_dssp CCC----------------BTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC--
T ss_pred CCC----------------CccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence 000 111123578999999999999999999999999999876643
No 169
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4e-38 Score=360.82 Aligned_cols=259 Identities=25% Similarity=0.272 Sum_probs=210.2
Q ss_pred cCCCCCceEecCCcceEEEEEe----cCCcEEEEEEeeccCC--CcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCc
Q 001274 802 GNFSEGAVIGRGACGTVYKATL----ANGEVIAVKKIKLRGE--GATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDS 874 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~----~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 874 (1109)
++|++.+.||+|+||+||+|+. .+++.||||+++.... .....+.+.+|+++++++ +||||+++++++...+.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 5789999999999999999987 3689999999864321 122345677899999999 69999999999999999
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
.++||||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 134 ~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~ 207 (355)
T 1vzo_A 134 LHLILDYINGGELFTHLSQRER---FTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSK 207 (355)
T ss_dssp EEEEECCCCSCBHHHHHHHHSC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEE
T ss_pred EEEEeecCCCCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCCCCe
Confidence 9999999999999999976543 899999999999999999999 7799999999999999999999999999998
Q ss_pred cccCCCCCCccccccccceeccccccC--CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCch
Q 001274 955 LIDLPYSKSMSAIAGSYGYIAPEYAYT--MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSE 1032 (1109)
Q Consensus 955 ~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1109)
..............||+.|+|||++.+ ..++.++|||||||++|||++|+.||.............+.......+..
T Consensus 208 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~- 286 (355)
T 1vzo_A 208 EFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYP- 286 (355)
T ss_dssp ECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCC-
T ss_pred ecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCCCCC-
Confidence 764333333445679999999999986 34789999999999999999999999865544444444444333222111
Q ss_pred hhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHHHHHh
Q 001274 1033 LFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRP-----TMREVIAMMIDA 1080 (1109)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RP-----t~~evl~~L~~~ 1080 (1109)
......+.+++.+||+.||++|| +++|++++.+..
T Consensus 287 -------------~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f~ 326 (355)
T 1vzo_A 287 -------------QEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQ 326 (355)
T ss_dssp -------------TTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGT
T ss_pred -------------cccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcchh
Confidence 11123567899999999999999 999999987654
No 170
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=4.2e-39 Score=361.12 Aligned_cols=266 Identities=25% Similarity=0.360 Sum_probs=191.1
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhcc--CCCCceeeEEEEEEeCC----ce
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGK--IRHRNIVKLYGFCYHQD----SN 875 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~----~~ 875 (1109)
++|++.+.||+|+||+||+|++. ++.||||++.. .....+.+|.+++.. ++||||+++++++.... ..
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~-----~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 76 (303)
T 3gxj_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSS-----REERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQL 76 (303)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC------TTHHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEE
T ss_pred ceeeehhhccCCCCeEEEEEEEc-CcceEEEEecc-----cchhhHHHHHHHHHHHhccCcceeeeeeecccCCCcccee
Confidence 68999999999999999999875 89999999862 234567788888877 79999999999998876 67
Q ss_pred EEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcC-----CCCeEecCCCCCceeeCCCCceEEeec
Q 001274 876 LLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDC-----RPHIIHRDIKSNNILLDEEFQAHVGDF 950 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dlkp~NIll~~~~~~kl~DF 950 (1109)
++||||+++|+|.+++.... +++..+..++.|++.|++|||... +.+|+||||||+||+++.++.+||+||
T Consensus 77 ~lv~e~~~~g~L~~~l~~~~----~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl~DF 152 (303)
T 3gxj_A 77 WLVSDYHEHGSLFDYLNRYT----VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL 152 (303)
T ss_dssp EEEEECCTTCCHHHHHHHCC----BCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCTTCCC-BCCC
T ss_pred EEEEeccCCCCHHHHHhccC----cchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECCCCCEEEeec
Confidence 99999999999999997643 788899999999999999999432 469999999999999999999999999
Q ss_pred cccccccCCCCC---CccccccccceeccccccCC------CCCccchhHHHHHHHHHHHhC----------CCCCCCcc
Q 001274 951 GLAKLIDLPYSK---SMSAIAGSYGYIAPEYAYTM------KVTEKCDIYSFGVVLLELITG----------KSPVQSLE 1011 (1109)
Q Consensus 951 G~a~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlGvll~elltg----------~~pf~~~~ 1011 (1109)
|+++........ ......||+.|+|||++.+. .++.++|||||||++|||++| +.||....
T Consensus 153 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~ 232 (303)
T 3gxj_A 153 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV 232 (303)
T ss_dssp CC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTC
T ss_pred CcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccccC
Confidence 999766532221 12334799999999998876 445789999999999999999 66765432
Q ss_pred cCCc-HHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1012 LGGD-LVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1012 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
.... ............. ......+ ....+....+.+++.+||+.||++|||++++++.|+.+.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~~ 299 (303)
T 3gxj_A 233 PSDPSVEEMRKVVCEQKL--RPNIPNR-----WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp C-CCCCC-CHHHHTTSCC--CCCCCGG-----GGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC-
T ss_pred CCCccHHHHHHHHHHhhc--CCCcccc-----ccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhhc
Confidence 1111 1111111111110 0000000 012355667999999999999999999999999999887543
No 171
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=1e-37 Score=361.73 Aligned_cols=257 Identities=22% Similarity=0.320 Sum_probs=203.9
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC--CCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR--HRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.+.||+|+||+||+|+..+++.||||++..........+.+.+|++++++++ ||||+++++++...+..++||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 468999999999999999999888999999999866555555678999999999996 599999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
| +.+++|.+++..... +++.++..++.||+.||+||| +.+|+||||||+||+++ ++.+||+|||+++.....
T Consensus 136 E-~~~~~L~~~l~~~~~---~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~ 207 (390)
T 2zmd_A 136 E-CGNIDLNSWLKKKKS---IDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 207 (390)
T ss_dssp E-CCSEEHHHHHHHCSS---CCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---
T ss_pred e-cCCCCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCC
Confidence 9 568899999987653 889999999999999999999 78999999999999995 579999999999876532
Q ss_pred CCC-CccccccccceeccccccC-----------CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhcc
Q 001274 960 YSK-SMSAIAGSYGYIAPEYAYT-----------MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEM 1027 (1109)
Q Consensus 960 ~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~ 1027 (1109)
... .....+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.... .....+.......
T Consensus 208 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~---~~~~~~~~~~~~~ 284 (390)
T 2zmd_A 208 TTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII---NQISKLHAIIDPN 284 (390)
T ss_dssp ------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCC---CHHHHHHHHHCTT
T ss_pred CccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhh---HHHHHHHHHhCcc
Confidence 221 2345679999999999865 468999999999999999999999997532 1222222222211
Q ss_pred CCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1028 VPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
.... +.. .. ...+.+++.+||+.||++|||+.|++++.+...
T Consensus 285 ~~~~--~~~-------~~---~~~~~~li~~~L~~dP~~Rps~~ell~hp~~~~ 326 (390)
T 2zmd_A 285 HEIE--FPD-------IP---EKDLQDVLKCCLKRDPKQRISIPELLAHPYVQI 326 (390)
T ss_dssp SCCC--CCC-------CS---CHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHS
T ss_pred ccCC--CCc-------cc---hHHHHHHHHHHcccChhhCCCHHHHhhCcCccc
Confidence 1100 000 00 235779999999999999999999999876643
No 172
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.3e-37 Score=345.95 Aligned_cols=265 Identities=21% Similarity=0.328 Sum_probs=211.1
Q ss_pred cCCCCCc-eEecCCcceEEEEEec---CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEE
Q 001274 802 GNFSEGA-VIGRGACGTVYKATLA---NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLL 877 (1109)
Q Consensus 802 ~~~~~~~-~lG~G~fg~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 877 (1109)
++|.+.. .||+|+||+||+|++. +++.||||+++.. ......+.+.+|++++++++||||+++++++ ..+..++
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~l 86 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG-TEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML 86 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSS-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCc-cchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEE
Confidence 3455555 8999999999999853 5788999999743 2334567799999999999999999999999 5567899
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
||||+++++|.+++..... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 87 v~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~ 161 (287)
T 1u59_A 87 VMEMAGGGPLHKFLVGKRE--EIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALG 161 (287)
T ss_dssp EEECCTTEEHHHHHTTCTT--TSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECT
T ss_pred EEEeCCCCCHHHHHHhCCc--cCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceeeec
Confidence 9999999999999975543 3899999999999999999999 7799999999999999999999999999998764
Q ss_pred CCCC--CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhh
Q 001274 958 LPYS--KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELF 1034 (1109)
Q Consensus 958 ~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1109)
.... .......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||..... ......+.. ...+. .
T Consensus 162 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-~~~~~~i~~---~~~~~---~ 234 (287)
T 1u59_A 162 ADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG-PEVMAFIEQ---GKRME---C 234 (287)
T ss_dssp TCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT-HHHHHHHHT---TCCCC---C
T ss_pred cCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH-HHHHHHHhc---CCcCC---C
Confidence 3222 11233456889999999998899999999999999999999 9999976432 112222211 11000 0
Q ss_pred hhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCCCCCC
Q 001274 1035 DKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSDYPSS 1090 (1109)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~~~~ 1090 (1109)
.......+.+++.+||+.||++||++.+++++|+.+..+.......
T Consensus 235 ----------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~~~ 280 (287)
T 1u59_A 235 ----------PPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVEG 280 (287)
T ss_dssp ----------CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred ----------CCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCcccC
Confidence 1112246789999999999999999999999999998776554433
No 173
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=7.5e-38 Score=356.52 Aligned_cols=268 Identities=23% Similarity=0.312 Sum_probs=199.3
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHH--hccCCCCceeeEEEEEEeC-----Cc
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEIST--LGKIRHRNIVKLYGFCYHQ-----DS 874 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~l~~~~~~~-----~~ 874 (1109)
++|++.+.||+|+||+||+|+. +++.||||++... ....+..|.++ +..++||||+++++++... ..
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 86 (336)
T 3g2f_A 13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA-----NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRME 86 (336)
T ss_dssp TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG-----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEE
T ss_pred HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc-----chhhHHHHHHHHHHHhccCcchhhheecccccccCCCce
Confidence 6888999999999999999987 5899999999733 23344445444 5568999999999866432 24
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCC---------CeEecCCCCCceeeCCCCce
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRP---------HIIHRDIKSNNILLDEEFQA 945 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~---------~ivH~Dlkp~NIll~~~~~~ 945 (1109)
.++||||+++|+|.+++.... .++..+..++.||+.||+||| +. +|+||||||+||+++.++.+
T Consensus 87 ~~lv~e~~~~g~L~~~l~~~~----~~~~~~~~i~~qi~~~L~~LH---~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~ 159 (336)
T 3g2f_A 87 YLLVMEYYPNGSLXKYLSLHT----SDWVSSCRLAHSVTRGLAYLH---TELPRGDHYKPAISHRDLNSRNVLVKNDGTC 159 (336)
T ss_dssp EEEEECCCTTCBHHHHHHHCC----BCHHHHHHHHHHHHHHHHHHH---CCBCCGGGCBCCEECSSCSGGGEEECTTSCE
T ss_pred EEEEEecCCCCcHHHHHhhcc----cchhHHHHHHHHHHHHHHHHH---hhhccccccccceeecccccceEEEcCCCcE
Confidence 589999999999999997654 588999999999999999999 66 99999999999999999999
Q ss_pred EEeeccccccccCCC-------CCCccccccccceeccccccC-------CCCCccchhHHHHHHHHHHHhCCCCCCCcc
Q 001274 946 HVGDFGLAKLIDLPY-------SKSMSAIAGSYGYIAPEYAYT-------MKVTEKCDIYSFGVVLLELITGKSPVQSLE 1011 (1109)
Q Consensus 946 kl~DFG~a~~~~~~~-------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~DvwSlGvll~elltg~~pf~~~~ 1011 (1109)
||+|||+++...... ........||+.|+|||++.+ ..++.++|||||||++|||++|..||....
T Consensus 160 kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~ 239 (336)
T 3g2f_A 160 VISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGE 239 (336)
T ss_dssp EECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTS
T ss_pred EEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCcc
Confidence 999999998764321 111234579999999999987 456789999999999999999988765432
Q ss_pred cCCcHH-------------HHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1012 LGGDLV-------------TWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1012 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
...... ..+........ . .+...............+.+++.+||+.||++|||++|+++.|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~ 314 (336)
T 3g2f_A 240 SVPEYQMAFQTEVGNHPTFEDMQVLVSREK-Q----RPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMA 314 (336)
T ss_dssp CCCCCCCTTHHHHCSSCCHHHHHHHHTTSC-C----CCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred chhHHHHhhhcccCCCchHHHHHhhhcccc-c----CCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHH
Confidence 111100 00010000000 0 00011111112234557899999999999999999999999999
Q ss_pred HhhhccCCC
Q 001274 1079 DARQSVSDY 1087 (1109)
Q Consensus 1079 ~~~~~~~~~ 1087 (1109)
++.......
T Consensus 315 ~ll~~~~~~ 323 (336)
T 3g2f_A 315 ELMMIWERN 323 (336)
T ss_dssp HHHHCCCC-
T ss_pred HHHHHHHhc
Confidence 988766443
No 174
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=5.6e-38 Score=347.30 Aligned_cols=255 Identities=22% Similarity=0.368 Sum_probs=185.5
Q ss_pred hcCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCC-cchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEG-ATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 878 (1109)
.++|++.+.||+|+||+||+|+. .+++.||||++...... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 35788999999999999999997 47999999999643211 12246788999999999999999999999999999999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccC
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDL 958 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~ 958 (1109)
|||+++++|.+++..... .+++..+..++.|+++|++||| +.+|+||||||+||+++.++.+||+|||.+.....
T Consensus 90 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~ 164 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNRVK--PFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKM 164 (278)
T ss_dssp EECCTTEEHHHHHHTCSS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred EecCCCCcHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccC
Confidence 999999999999986543 3899999999999999999999 77999999999999999999999999999987642
Q ss_pred CCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 959 PYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 959 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
.. .......||+.|+|||++.+..++.++||||+|+++|||++|+.||......... ..........
T Consensus 165 ~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~----~~~~~~~~~~-------- 231 (278)
T 3cok_A 165 PH-EKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTL----NKVVLADYEM-------- 231 (278)
T ss_dssp ----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC---------CCSSCCCC--------
T ss_pred CC-CcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHH----HHHhhcccCC--------
Confidence 22 2223457899999999999999999999999999999999999999754322111 1111111000
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
.......+.+++.+||+.||++|||+++++++-+.
T Consensus 232 ------~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~ 266 (278)
T 3cok_A 232 ------PSFLSIEAKDLIHQLLRRNPADRLSLSSVLDHPFM 266 (278)
T ss_dssp ------CTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSTTT
T ss_pred ------ccccCHHHHHHHHHHcccCHhhCCCHHHHhcCccc
Confidence 01112357799999999999999999999987543
No 175
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=2.7e-37 Score=347.67 Aligned_cols=271 Identities=22% Similarity=0.342 Sum_probs=203.3
Q ss_pred hcCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 878 (1109)
.++|++.+.||+|+||.||+|+. .+++.||||++..... .....+.+.+|++++++++||||+++++++...+..++|
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 36799999999999999999986 4789999999975332 334456789999999999999999999999999999999
Q ss_pred EEeccCCCHHHHhccCC-CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccccc
Q 001274 879 YEYMENGSLGEQLHGNK-QTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
|||+++++|.+++.... ....+++..+..++.|++.||.||| +.+++||||||+||+++.++.+||+|||+++...
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~ 187 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS 187 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence 99999999999986421 1223899999999999999999999 7799999999999999999999999999998654
Q ss_pred CCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhh
Q 001274 958 LPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKR 1037 (1109)
Q Consensus 958 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1109)
.. ........+++.|+|||++.+..++.++||||||+++|||++|+.||.+.. ...............+.. ..
T Consensus 188 ~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~~~--~~-- 260 (310)
T 2wqm_A 188 SK-TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK--MNLYSLCKKIEQCDYPPL--PS-- 260 (310)
T ss_dssp ------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC-----CCHHHHHHHHHTTCSCCC--CT--
T ss_pred CC-CccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc--hhHHHHHHHhhcccCCCC--cc--
Confidence 22 222334578999999999999999999999999999999999999997532 122222222222211110 00
Q ss_pred cchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCCCCC
Q 001274 1038 LDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSDYPS 1089 (1109)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~~~ 1089 (1109)
......+.+++.+||+.||++|||+.+++++++++........+
T Consensus 261 --------~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~~~~ 304 (310)
T 2wqm_A 261 --------DHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASSLE 304 (310)
T ss_dssp --------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC----
T ss_pred --------cccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhhhhh
Confidence 01123577999999999999999999999999999877765544
No 176
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=4.8e-38 Score=349.98 Aligned_cols=251 Identities=21% Similarity=0.321 Sum_probs=201.1
Q ss_pred cCCCCCceEecCCcceEEEEEec-CC-------cEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NG-------EVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD 873 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 873 (1109)
++|++.+.||+|+||+||+|++. ++ +.||+|++.... ....+.+.+|++++++++||||+++++++..++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 85 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH--RNYSESFFEAASMMSKLSHKHLVLNYGVCVCGD 85 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGG--GGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTT
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccccc--HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCC
Confidence 57888999999999999999865 23 579999986432 234577999999999999999999999999999
Q ss_pred ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCc--------e
Q 001274 874 SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQ--------A 945 (1109)
Q Consensus 874 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~--------~ 945 (1109)
..++||||+++|+|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++. +
T Consensus 86 ~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~ 160 (289)
T 4fvq_A 86 ENILVQEFVKFGSLDTYLKKNKN--CINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPFI 160 (289)
T ss_dssp CCEEEEECCTTCBHHHHHHHTGG--GCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCCEE
T ss_pred CCEEEEECCCCCCHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCccccccccee
Confidence 99999999999999999987543 3899999999999999999999 779999999999999998887 9
Q ss_pred EEeeccccccccCCCCCCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhh
Q 001274 946 HVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSI 1024 (1109)
Q Consensus 946 kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~ 1024 (1109)
||+|||.+.... ......+|+.|+|||++.+ ..++.++||||+|+++|||++|..|+.... ........ .
T Consensus 161 kl~Dfg~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~---~~~~~~~~-~ 231 (289)
T 4fvq_A 161 KLSDPGISITVL-----PKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSAL---DSQRKLQF-Y 231 (289)
T ss_dssp EECCCCSCTTTS-----CHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTS---CHHHHHHH-H
T ss_pred eeccCccccccc-----CccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCcccc---chHHHHHH-h
Confidence 999999997543 1233467889999999987 679999999999999999999655543221 11111111 1
Q ss_pred hccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhh
Q 001274 1025 HEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQ 1082 (1109)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 1082 (1109)
.......... ...+.+++.+||+.||++|||+.|++++|+.+..
T Consensus 232 ~~~~~~~~~~--------------~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~ 275 (289)
T 4fvq_A 232 EDRHQLPAPK--------------AAELANLINNCMDYEPDHRPSFRAIIRDLNSLFT 275 (289)
T ss_dssp HTTCCCCCCS--------------SCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred hccCCCCCCC--------------CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence 1111111000 1246789999999999999999999999988864
No 177
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=3.7e-37 Score=344.07 Aligned_cols=264 Identities=20% Similarity=0.266 Sum_probs=208.3
Q ss_pred hcCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEE-EeCCceEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFC-YHQDSNLLL 878 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lv 878 (1109)
.++|++.+.||+|+||+||+|++ .+++.||||++.... ..+.+.+|+++++.++|++++..+.++ ...+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv 83 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT----KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV 83 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS----SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc----chhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEE
Confidence 46899999999999999999996 579999999987433 234688999999999987766555555 566777999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee---CCCCceEEeecccccc
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL---DEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kl~DFG~a~~ 955 (1109)
|||+ +++|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||.++.
T Consensus 84 ~e~~-~~~L~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~ 157 (296)
T 3uzp_A 84 MELL-GPSLEDLFNFCSR--KFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK 157 (296)
T ss_dssp EECC-CCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred EEec-CCCHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccc
Confidence 9999 9999999975443 3899999999999999999999 7799999999999999 4889999999999987
Q ss_pred ccCCCCC------CccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccC--CcHHHHHHHhhhcc
Q 001274 956 IDLPYSK------SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELG--GDLVTWVRRSIHEM 1027 (1109)
Q Consensus 956 ~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~--~~~~~~~~~~~~~~ 1027 (1109)
....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||...... ......+.......
T Consensus 158 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~ 237 (296)
T 3uzp_A 158 YRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST 237 (296)
T ss_dssp CBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS
T ss_pred ccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCC
Confidence 6533221 124567999999999999999999999999999999999999999865422 12222222111110
Q ss_pred CCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCC
Q 001274 1028 VPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSD 1086 (1109)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~ 1086 (1109)
+ .+... ......+.+++.+||+.||++|||+.++++.|+.+......
T Consensus 238 -~-~~~~~----------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~ 284 (296)
T 3uzp_A 238 -P-IEVLC----------KGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF 284 (296)
T ss_dssp -C-HHHHT----------TTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred -c-hHHHH----------hhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCC
Confidence 0 00000 11124578999999999999999999999999998877644
No 178
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=2.1e-37 Score=344.93 Aligned_cols=252 Identities=27% Similarity=0.379 Sum_probs=203.5
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEe----CCceE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYH----QDSNL 876 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~ 876 (1109)
..|++.+.||+|+||+||+|++. +++.||+|++..........+.+.+|+.++++++||||+++++++.. ....+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 45777889999999999999865 68899999998666555667789999999999999999999999875 34578
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCC--eEecCCCCCceeeC-CCCceEEeecccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPH--IIHRDIKSNNILLD-EEFQAHVGDFGLA 953 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIll~-~~~~~kl~DFG~a 953 (1109)
+||||+++|+|.+++..... +++..+..++.|++.||+||| +.+ |+||||||+||+++ .++.+||+|||++
T Consensus 106 lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~ 179 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRFKV---MKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLA 179 (290)
T ss_dssp EEEECCCSCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGG
T ss_pred EEEEecCCCCHHHHHHHccC---CCHHHHHHHHHHHHHHHHHHH---cCCCCEEECCCCHHHEEEECCCCCEEEeeCCCc
Confidence 99999999999999976543 899999999999999999999 667 99999999999997 7899999999999
Q ss_pred ccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchh
Q 001274 954 KLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSEL 1033 (1109)
Q Consensus 954 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1109)
..... .......||+.|+|||++. +.++.++||||+|+++|+|++|+.||.... ..............+ ..
T Consensus 180 ~~~~~---~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~---~~~~~~~~~~~~~~~--~~ 250 (290)
T 1t4h_A 180 TLKRA---SFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQ---NAAQIYRRVTSGVKP--AS 250 (290)
T ss_dssp GGCCT---TSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCS---SHHHHHHHHTTTCCC--GG
T ss_pred ccccc---cccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcC---cHHHHHHHHhccCCc--cc
Confidence 75442 2234457899999999876 459999999999999999999999997533 222333322222111 11
Q ss_pred hhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1034 FDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
++.. ....+.+++.+||+.||++|||++|++++-+
T Consensus 251 ~~~~----------~~~~l~~li~~~l~~dp~~Rps~~ell~h~~ 285 (290)
T 1t4h_A 251 FDKV----------AIPEVKEIIEGCIRQNKDERYSIKDLLNHAF 285 (290)
T ss_dssp GGGC----------CCHHHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred cCCC----------CCHHHHHHHHHHccCChhhCCCHHHHhhCcc
Confidence 1111 1135789999999999999999999998743
No 179
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=4.2e-37 Score=343.25 Aligned_cols=255 Identities=24% Similarity=0.349 Sum_probs=210.2
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|.+.+.||+|+||+||+|++. +++.||+|++..... .....+.+.+|+++++.++||||+++++++...+..++||
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 94 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 94 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence 67889999999999999999976 588999999975432 2334567889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++++|.+++..... +++..+..++.|+++|++||| +.+|+||||||+||+++.++.+||+|||.++.....
T Consensus 95 e~~~~~~L~~~~~~~~~---~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 168 (294)
T 2rku_A 95 ELCRRRSLLELHKRRKA---LTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 168 (294)
T ss_dssp ECCTTCBHHHHHHHHCS---CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred ecCCCCCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceecccC
Confidence 99999999999876543 899999999999999999999 779999999999999999999999999999876422
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
........||+.|+|||++.+..++.++||||+|+++|||++|+.||.... ..+..............
T Consensus 169 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~----~~~~~~~~~~~~~~~~~------- 236 (294)
T 2rku_A 169 -GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC----LKETYLRIKKNEYSIPK------- 236 (294)
T ss_dssp -TCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHTTCCCCCT-------
T ss_pred -ccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHhhccCCCcc-------
Confidence 222344678999999999999999999999999999999999999997533 22222222121111111
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
.....+.+++.+||+.||++|||++|++++-+...
T Consensus 237 -------~~~~~~~~li~~~l~~~p~~Rps~~~ll~~~~~~~ 271 (294)
T 2rku_A 237 -------HINPVAASLIQKMLQTDPTARPTINELLNDEFFTS 271 (294)
T ss_dssp -------TSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHT
T ss_pred -------ccCHHHHHHHHHHcccChhhCcCHHHHhhChheec
Confidence 11235778999999999999999999999877653
No 180
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=5.1e-37 Score=340.54 Aligned_cols=256 Identities=23% Similarity=0.302 Sum_probs=205.3
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCc----chhHHHHHHHHHhccCCCCceeeEEEEEEeCCceE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGA----TADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 876 (1109)
++|++.+.||+|+||+||+|++. +++.||+|+++...... ...+.+.+|++++++++||||+++++++...+..+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 56889999999999999999976 68999999997653221 23577999999999999999999999999999999
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCC----ceEEeeccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEF----QAHVGDFGL 952 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~----~~kl~DFG~ 952 (1109)
+||||+++++|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++ .+||+|||.
T Consensus 85 lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~ 158 (283)
T 3bhy_A 85 LILELVSGGELFDFLAEKES---LTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGI 158 (283)
T ss_dssp EEEECCCSCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred EEEeecCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEeccc
Confidence 99999999999999976443 899999999999999999999 77999999999999998877 899999999
Q ss_pred cccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCch
Q 001274 953 AKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSE 1032 (1109)
Q Consensus 953 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1109)
++..... .......+++.|+|||++.+..++.++||||+|+++|+|++|+.||.... ..+..............
T Consensus 159 ~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----~~~~~~~~~~~~~~~~~ 232 (283)
T 3bhy_A 159 AHKIEAG--NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGET----KQETLTNISAVNYDFDE 232 (283)
T ss_dssp CEECC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHTTCCCCCH
T ss_pred ceeccCC--CcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcc----hHHHHHHhHhcccCCcc
Confidence 9876422 22344568999999999999999999999999999999999999997532 22222222111111111
Q ss_pred hhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1033 LFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
... ......+.+++.+||+.||++||++.|++++-+.
T Consensus 233 ~~~----------~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~ 269 (283)
T 3bhy_A 233 EYF----------SNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWI 269 (283)
T ss_dssp HHH----------TTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHH
T ss_pred hhc----------ccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHH
Confidence 100 1112357899999999999999999999987543
No 181
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=7e-38 Score=354.68 Aligned_cols=258 Identities=24% Similarity=0.400 Sum_probs=200.6
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcE----EEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEV----IAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~----vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 876 (1109)
++|++.++||+|+||+||+|++. +++. ||+|.+... ......+.+.+|++++++++||||+++++++.... .+
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA-TSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCC-SSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccc-cCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 57889999999999999999864 4544 577776533 23345678999999999999999999999998754 78
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
+|+||+++|+|.+++...... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 93 ~v~~~~~~g~L~~~l~~~~~~--~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~ 167 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVREHKDN--IGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167 (327)
T ss_dssp EEECCCSSCBHHHHHHHTTTC--CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC----
T ss_pred EEEEecCCCcHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCcceeEc
Confidence 999999999999999876543 899999999999999999999 779999999999999999999999999999876
Q ss_pred cCCCC-CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhh
Q 001274 957 DLPYS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELF 1034 (1109)
Q Consensus 957 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1109)
..... .......+|+.|+|||++.+..++.++||||+||++|||++ |+.||.+... ......+..... .+..
T Consensus 168 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~-~~~~~~~~~~~~--~~~~--- 241 (327)
T 3lzb_A 168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-SEISSILEKGER--LPQP--- 241 (327)
T ss_dssp ------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG-GGHHHHHHTTCC--CCCC---
T ss_pred cCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHHHcCCC--CCCC---
Confidence 43222 22234457889999999999999999999999999999999 9999986432 222222222111 1110
Q ss_pred hhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1035 DKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
......+.+++.+||+.||++||++.|+++.|..+...
T Consensus 242 -----------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 279 (327)
T 3lzb_A 242 -----------PICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp -----------TTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred -----------ccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence 11123577899999999999999999999999988643
No 182
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=2.3e-38 Score=357.46 Aligned_cols=264 Identities=27% Similarity=0.370 Sum_probs=207.7
Q ss_pred CCCCceEecCCcceEEEEEec-----CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeC--CceE
Q 001274 804 FSEGAVIGRGACGTVYKATLA-----NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQ--DSNL 876 (1109)
Q Consensus 804 ~~~~~~lG~G~fg~Vy~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~ 876 (1109)
|++.++||+|+||+||+|.+. +++.||||+++.. ......+.+.+|++++++++||||+++++++.+. ...+
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 111 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKAD-AGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQ 111 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTT-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccc-cChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEE
Confidence 488899999999999988642 5889999999744 2334467799999999999999999999999884 5678
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
+||||+++|+|.+++.... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.++..
T Consensus 112 lv~e~~~~~~L~~~l~~~~----~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~ 184 (318)
T 3lxp_A 112 LVMEYVPLGSLRDYLPRHS----IGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAV 184 (318)
T ss_dssp EEECCCTTCBHHHHGGGSC----CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred EEEecccCCcHHHHHhhCC----CCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCccccccc
Confidence 9999999999999997653 899999999999999999999 779999999999999999999999999999876
Q ss_pred cCCCC--CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccC--------CcHH--HHHHHhh
Q 001274 957 DLPYS--KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELG--------GDLV--TWVRRSI 1024 (1109)
Q Consensus 957 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~--------~~~~--~~~~~~~ 1024 (1109)
..... .......+|..|+|||++.+..++.++||||+|+++|||++|+.||...... .... ..+....
T Consensus 185 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (318)
T 3lxp_A 185 PEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELL 264 (318)
T ss_dssp CTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHH
Confidence 53221 1123456788899999999999999999999999999999999998753210 0000 0001101
Q ss_pred hccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCCC
Q 001274 1025 HEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSDY 1087 (1109)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~ 1087 (1109)
.... . ..........+.+++.+||+.||++|||+.|+++.|+.+.......
T Consensus 265 ~~~~----------~--~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~~ 315 (318)
T 3lxp_A 265 ERGE----------R--LPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQGQ 315 (318)
T ss_dssp HTTC----------C--CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC-
T ss_pred hccc----------C--CCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhccC
Confidence 0000 0 0011122346889999999999999999999999999987766443
No 183
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=2.9e-37 Score=356.08 Aligned_cols=264 Identities=23% Similarity=0.278 Sum_probs=198.7
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC------c
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD------S 874 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~ 874 (1109)
++|++.+.||+|+||+||+|++. +++.||||++..........+.+.+|+.+++.++||||+++++++...+ .
T Consensus 25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 104 (371)
T 2xrw_A 25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQD 104 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCE
T ss_pred hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccc
Confidence 68999999999999999999865 6899999999865444455677889999999999999999999998765 6
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
.++||||++ |+|.+++.. .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 105 ~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 175 (371)
T 2xrw_A 105 VYIVMELMD-ANLCQVIQM-----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 175 (371)
T ss_dssp EEEEEECCS-EEHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCC--
T ss_pred eEEEEEcCC-CCHHHHHhh-----ccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEeeccc
Confidence 799999997 478888853 2889999999999999999999 7799999999999999999999999999998
Q ss_pred cccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccC-CCchh
Q 001274 955 LIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMV-PTSEL 1033 (1109)
Q Consensus 955 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~-~~~~~ 1033 (1109)
.... ........||+.|+|||++.+..++.++||||+||++|||++|+.||.+... .+.+........ +..+.
T Consensus 176 ~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~----~~~~~~i~~~~~~~~~~~ 249 (371)
T 2xrw_A 176 TAGT--SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH----IDQWNKVIEQLGTPCPEF 249 (371)
T ss_dssp ----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHC-CCCCCHHH
T ss_pred cccc--ccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHHHhCCCCHHH
Confidence 6542 2223456789999999999999999999999999999999999999985431 222222211111 01110
Q ss_pred hhh--------------------------hc-chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1034 FDK--------------------------RL-DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1034 ~~~--------------------------~~-~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
+.. .. .............+.+++.+||+.||++|||++|++++-+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~ 323 (371)
T 2xrw_A 250 MKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYIN 323 (371)
T ss_dssp HTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHH
T ss_pred HHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCcchh
Confidence 000 00 000001122345788999999999999999999999998764
No 184
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=9.8e-38 Score=356.55 Aligned_cols=271 Identities=15% Similarity=0.186 Sum_probs=204.4
Q ss_pred cCCCCCceEecCCcceEEEEEec----CCcEEEEEEeeccCCCcc---------hhHHHHHHHHHhccCCCCceeeEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA----NGEVIAVKKIKLRGEGAT---------ADNSFLAEISTLGKIRHRNIVKLYGF 868 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~~~~---------~~~~~~~E~~~l~~l~h~niv~l~~~ 868 (1109)
++|++.+.||+|+||+||+|++. ++..||||++........ ....+.+|+..++.++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 57889999999999999999975 578899999874422111 12346788889999999999999999
Q ss_pred EEe----CCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCC-
Q 001274 869 CYH----QDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEF- 943 (1109)
Q Consensus 869 ~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~- 943 (1109)
+.. ....++||||+ +++|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~ 189 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG---TFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYKNP 189 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHCBGGG---BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESSST
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccCCC
Confidence 988 67889999999 999999998655 3899999999999999999999 77999999999999998877
Q ss_pred -ceEEeeccccccccCCCC------CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcH
Q 001274 944 -QAHVGDFGLAKLIDLPYS------KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDL 1016 (1109)
Q Consensus 944 -~~kl~DFG~a~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~ 1016 (1109)
.+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.........
T Consensus 190 ~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~ 269 (345)
T 2v62_A 190 DQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVA 269 (345)
T ss_dssp TSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHH
T ss_pred CcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHH
Confidence 999999999986642211 1114457999999999999999999999999999999999999999753322222
Q ss_pred HHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCC
Q 001274 1017 VTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSD 1086 (1109)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~ 1086 (1109)
............+ ........ .......+.+++.+||+.||++||++++|++.|+........
T Consensus 270 ~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~ 332 (345)
T 2v62_A 270 VQTAKTNLLDELP--QSVLKWAP-----SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGIPLGP 332 (345)
T ss_dssp HHHHHHHHHHTTT--HHHHHHSC-----TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCCCCCC
T ss_pred HHHHHHhhccccc--HHHHhhcc-----ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCCcccC
Confidence 2222222222221 11111100 001224688999999999999999999999999887654433
No 185
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=1.3e-37 Score=348.83 Aligned_cols=262 Identities=27% Similarity=0.370 Sum_probs=205.0
Q ss_pred cCCCCCceEecCCcceEEEEEe-----cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeC--Cc
Q 001274 802 GNFSEGAVIGRGACGTVYKATL-----ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQ--DS 874 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~ 874 (1109)
++|++.+.||+|+||.||+|++ .+++.||||+++... .....+.+.+|++++++++||||+++++++... ..
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 99 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES-GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG 99 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CC
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccc-cchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCce
Confidence 4688889999999999999983 368999999997543 233457789999999999999999999999876 56
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
.++||||+++|+|.+++...... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.++
T Consensus 100 ~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~ 174 (302)
T 4e5w_A 100 IKLIMEFLPSGSLKEYLPKNKNK--INLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTK 174 (302)
T ss_dssp EEEEEECCTTCBHHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred EEEEEEeCCCCcHHHHHHhcccc--CCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECcccccc
Confidence 79999999999999999654433 899999999999999999999 7799999999999999999999999999998
Q ss_pred cccCCCC--CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcc----------cCCcHHHHHHH
Q 001274 955 LIDLPYS--KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLE----------LGGDLVTWVRR 1022 (1109)
Q Consensus 955 ~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~----------~~~~~~~~~~~ 1022 (1109)
....... .......+|..|+|||++.+..++.++||||+|+++|||++|+.|+.... ........+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (302)
T 4e5w_A 175 AIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVN 254 (302)
T ss_dssp ECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHH
T ss_pred cccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHH
Confidence 7653322 12244568889999999999999999999999999999999999865321 00001111111
Q ss_pred hhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1023 SIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
....... ..........+.+++.+||+.||++|||+.++++.|+.+.
T Consensus 255 ~~~~~~~------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 255 TLKEGKR------------LPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HHHTTCC------------CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHhccCC------------CCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 1111000 0011122346889999999999999999999999998764
No 186
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=2.2e-37 Score=371.04 Aligned_cols=256 Identities=24% Similarity=0.329 Sum_probs=203.6
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|++.++||+|+||+||+|++. +++.||||++............+.+|+++++.++||||+++++++...+..++|||
T Consensus 37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 116 (494)
T 3lij_A 37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME 116 (494)
T ss_dssp HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence 57999999999999999999976 68999999998655444456789999999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC---CCceEEeecccccccc
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE---EFQAHVGDFGLAKLID 957 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kl~DFG~a~~~~ 957 (1109)
|+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++. ++.+||+|||+++...
T Consensus 117 ~~~~g~L~~~~~~~~~---~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~ 190 (494)
T 3lij_A 117 CYKGGELFDEIIHRMK---FNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFE 190 (494)
T ss_dssp CCCSCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECB
T ss_pred cCCCCcHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECC
Confidence 9999999998876543 899999999999999999999 779999999999999976 4559999999998765
Q ss_pred CCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhh
Q 001274 958 LPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKR 1037 (1109)
Q Consensus 958 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1109)
.. .......||+.|+|||++. ..++.++||||+||++|+|++|+.||.+.. ..+.................+
T Consensus 191 ~~--~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~----~~~~~~~i~~~~~~~~~~~~~- 262 (494)
T 3lij_A 191 NQ--KKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQT----DQEILRKVEKGKYTFDSPEWK- 262 (494)
T ss_dssp TT--BCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHTCCCCCSGGGT-
T ss_pred CC--ccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHHhCCCCCCchhcc-
Confidence 32 2344567999999999876 569999999999999999999999997533 223333322222211111100
Q ss_pred cchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1038 LDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
.....+.+++.+||+.||++|||+.|++++-+-.
T Consensus 263 ---------~~s~~~~~li~~~L~~dp~~R~s~~e~l~hp~~~ 296 (494)
T 3lij_A 263 ---------NVSEGAKDLIKQMLQFDSQRRISAQQALEHPWIK 296 (494)
T ss_dssp ---------TSCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHH
T ss_pred ---------cCCHHHHHHHHHHCCCChhhCccHHHHhcCcccc
Confidence 1123577999999999999999999999886543
No 187
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.2e-37 Score=358.51 Aligned_cols=260 Identities=27% Similarity=0.404 Sum_probs=197.6
Q ss_pred CCCCCceEecCCcceEEEEEec--CC--cEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEe-CCceEE
Q 001274 803 NFSEGAVIGRGACGTVYKATLA--NG--EVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYH-QDSNLL 877 (1109)
Q Consensus 803 ~~~~~~~lG~G~fg~Vy~~~~~--~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~l 877 (1109)
.|+..+.||+|+||+||+|++. ++ ..||||.++.. ......+.+.+|+.++++++||||+++++++.. ++..++
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l 168 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI-TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 168 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSC-SCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCC-CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence 4666789999999999999853 22 46899988643 233456789999999999999999999998764 457799
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
||||+++|+|.+++...... +++..+..++.||++||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 169 v~e~~~~g~L~~~l~~~~~~--~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~ 243 (373)
T 3c1x_A 169 VLPYMKHGDLRNFIRNETHN--PTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 243 (373)
T ss_dssp EEECCTTCBHHHHHHCTTCC--CBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred EEECCCCCCHHHHHhhcccC--CCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeecccccccc
Confidence 99999999999999865443 889999999999999999999 7799999999999999999999999999998654
Q ss_pred CCCCC---CccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchh
Q 001274 958 LPYSK---SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSEL 1033 (1109)
Q Consensus 958 ~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1109)
..... ......+|+.|+|||++.+..++.++|||||||++|||++ |..||..... ......+........
T Consensus 244 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~-~~~~~~~~~~~~~~~----- 317 (373)
T 3c1x_A 244 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT-FDITVYLLQGRRLLQ----- 317 (373)
T ss_dssp --------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCS-SCHHHHHHTTCCCCC-----
T ss_pred ccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCH-HHHHHHHHcCCCCCC-----
Confidence 22211 1234567889999999999999999999999999999999 6777765432 233322222111000
Q ss_pred hhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccC
Q 001274 1034 FDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVS 1085 (1109)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~ 1085 (1109)
.......+.+++.+||+.||++||++.|++++|+.+.....
T Consensus 318 -----------p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~ 358 (373)
T 3c1x_A 318 -----------PEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI 358 (373)
T ss_dssp -----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred -----------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcc
Confidence 00112357899999999999999999999999999887654
No 188
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=4.2e-38 Score=357.58 Aligned_cols=271 Identities=23% Similarity=0.382 Sum_probs=205.8
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|++.+.||+|+||+||+|++. +++.||||++..........+.+.+|++++++++||||+++++++...+..++|||
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 104 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE 104 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence 57899999999999999999976 58999999997665554556678899999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
|+++++|.++...... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.++.....
T Consensus 105 ~~~~~~l~~~~~~~~~---~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~- 177 (331)
T 4aaa_A 105 FVDHTILDDLELFPNG---LDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP- 177 (331)
T ss_dssp CCSEEHHHHHHHSTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred cCCcchHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCC-
Confidence 9999999888765443 899999999999999999999 779999999999999999999999999999865422
Q ss_pred CCCccccccccceeccccccCC-CCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCC-chhhh---
Q 001274 961 SKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPT-SELFD--- 1035 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--- 1035 (1109)
........+|+.|+|||++.+. .++.++||||+||++|||++|+.||............+.. .....+. ...+.
T Consensus 178 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 256 (331)
T 4aaa_A 178 GEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMC-LGNLIPRHQELFNKNP 256 (331)
T ss_dssp ------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHH-HCSCCHHHHHHHHHCG
T ss_pred ccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHH-hCCCChhhhhHhhhcc
Confidence 2223445789999999998875 7899999999999999999999999864322222221111 0000000 00000
Q ss_pred -------hhcc---hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1036 -------KRLD---LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1036 -------~~~~---~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
+... ............+.+++.+||+.||++|||++|++++-+..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~ 311 (331)
T 4aaa_A 257 VFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQ 311 (331)
T ss_dssp GGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHH
T ss_pred ccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcCchhc
Confidence 0000 00000112235688999999999999999999999886554
No 189
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=9.8e-38 Score=353.23 Aligned_cols=270 Identities=22% Similarity=0.335 Sum_probs=200.5
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|++.++||+|+||+||+|++. +++.||||++...... .....+.+|++++++++||||+++++++...+..++|||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 80 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEE-GAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFE 80 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC-------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEeccccc-ccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEec
Confidence 57889999999999999999976 7899999999644321 222345679999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
|++ |+|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 81 ~~~-~~l~~~~~~~~~--~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~- 153 (324)
T 3mtl_A 81 YLD-KDLKQYLDDCGN--IINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIP- 153 (324)
T ss_dssp CCS-EEHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC----
T ss_pred ccc-cCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCC-
Confidence 997 599999877554 3899999999999999999999 779999999999999999999999999999865422
Q ss_pred CCCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 961 SKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
........+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+.. ..+....... ..+.+.....
T Consensus 154 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~-~~i~~~~~~~--~~~~~~~~~~ 230 (324)
T 3mtl_A 154 TKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQL-HFIFRILGTP--TEETWPGILS 230 (324)
T ss_dssp ---------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH-HHHHHHHCCC--CTTTSTTGGG
T ss_pred ccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH-HHHHHHhCCC--ChHhchhhhc
Confidence 222344578999999999876 56899999999999999999999999864322221 1222111111 1111111000
Q ss_pred hh---------------hcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhh
Q 001274 1040 LS---------------AKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQ 1082 (1109)
Q Consensus 1040 ~~---------------~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 1082 (1109)
.. ..........+.+++.+|++.||++|||++|++++-+....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~ 288 (324)
T 3mtl_A 231 NEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSL 288 (324)
T ss_dssp CHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGG
T ss_pred chhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhhc
Confidence 00 00011122457899999999999999999999998765433
No 190
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=7.5e-38 Score=356.95 Aligned_cols=253 Identities=29% Similarity=0.430 Sum_probs=204.5
Q ss_pred cCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCC-cchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEG-ATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|+..+.||+|+||+||+|+. .+++.||||++...... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 4588889999999999999996 47899999999754332 223467899999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||++ |++.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 134 e~~~-g~l~~~l~~~~~--~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~- 206 (348)
T 1u5q_A 134 EYCL-GSASDLLEVHKK--PLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP- 206 (348)
T ss_dssp ECCS-EEHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS-
T ss_pred ecCC-CCHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEeeccCceecCC-
Confidence 9997 688888864433 3899999999999999999999 77999999999999999999999999999986542
Q ss_pred CCCCccccccccceecccccc---CCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh
Q 001274 960 YSKSMSAIAGSYGYIAPEYAY---TMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK 1036 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1109)
.....||+.|+|||++. +..++.++|||||||++|||++|+.||.... ....+........+.. ..
T Consensus 207 ----~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~----~~~~~~~~~~~~~~~~--~~- 275 (348)
T 1u5q_A 207 ----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN----AMSALYHIAQNESPAL--QS- 275 (348)
T ss_dssp ----BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----HHHHHHHHHHSCCCCC--CC-
T ss_pred ----CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC----hHHHHHHHHhcCCCCC--CC-
Confidence 23457999999999984 5678999999999999999999999997543 2222222222221110 00
Q ss_pred hcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1037 RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
......+.+++.+||+.||++|||+++++++.+...
T Consensus 276 ---------~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~~~ 311 (348)
T 1u5q_A 276 ---------GHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLR 311 (348)
T ss_dssp ---------TTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHS
T ss_pred ---------CCCCHHHHHHHHHHcccChhhCcCHHHHhhChhhhc
Confidence 011235779999999999999999999998877643
No 191
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=3.5e-37 Score=340.50 Aligned_cols=256 Identities=24% Similarity=0.337 Sum_probs=207.0
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.+.||+|+||+||+|++. +++.||||++..... ....+.+.+|+.+++.++||||+++++++...+..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 84 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA-VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL 84 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGC-TTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccc-hhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEE
Confidence 467899999999999999999975 689999999975433 234577899999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++++|.+++..... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.+......
T Consensus 85 e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 158 (276)
T 2yex_A 85 EYCSGGELFDRIEPDIG---MPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYN 158 (276)
T ss_dssp ECCTTEEGGGGSBTTTB---CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred EecCCCcHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccCCC
Confidence 99999999999976543 899999999999999999999 779999999999999999999999999999865422
Q ss_pred C-CCCccccccccceeccccccCCCC-CccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhh
Q 001274 960 Y-SKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKR 1037 (1109)
Q Consensus 960 ~-~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1109)
. ........||+.|+|||++.+..+ +.++||||+|+++|||++|+.||............... ..... ..
T Consensus 159 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~---~~~~~----~~- 230 (276)
T 2yex_A 159 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE---KKTYL----NP- 230 (276)
T ss_dssp TEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHT---TCTTS----TT-
T ss_pred cchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhh---ccccc----Cc-
Confidence 1 122345678999999999988775 78999999999999999999999865432221111111 10000 00
Q ss_pred cchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1038 LDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
.......+.+++.+||+.||++|||++|++++-+
T Consensus 231 -------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~ 264 (276)
T 2yex_A 231 -------WKKIDSAPLALLHKILVENPSARITIPDIKKDRW 264 (276)
T ss_dssp -------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTT
T ss_pred -------hhhcCHHHHHHHHHHCCCCchhCCCHHHHhcCcc
Confidence 0011235678999999999999999999998644
No 192
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=7.9e-37 Score=361.43 Aligned_cols=262 Identities=21% Similarity=0.286 Sum_probs=208.0
Q ss_pred hcCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCC-CceeeEEEEEEeCCceEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRH-RNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~~~lv 878 (1109)
.++|++.++||+|+||+||+|++ .+++.||||++..... ...+.+|+++++.++| +++..+..++...+..++|
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~----~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lv 81 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK----HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLV 81 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS----SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc----cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEE
Confidence 36899999999999999999996 4789999998874432 3458899999999976 6677777777888888999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee---CCCCceEEeecccccc
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL---DEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kl~DFG~a~~ 955 (1109)
|||+ +++|.+++...... +++..++.++.||+.||+||| +.+||||||||+|||+ +.++.+||+|||+++.
T Consensus 82 me~~-g~sL~~ll~~~~~~--l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~ 155 (483)
T 3sv0_A 82 MDLL-GPSLEDLFNFCSRK--LSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKK 155 (483)
T ss_dssp EECC-CCBHHHHHHHTTTC--CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred EECC-CCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCccee
Confidence 9999 99999999864433 999999999999999999999 7799999999999999 6889999999999987
Q ss_pred ccCCCCC------CccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhcc-C
Q 001274 956 IDLPYSK------SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEM-V 1028 (1109)
Q Consensus 956 ~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~-~ 1028 (1109)
....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+......... +....... .
T Consensus 156 ~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~-~~~i~~~~~~ 234 (483)
T 3sv0_A 156 YRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQK-YEKISEKKVA 234 (483)
T ss_dssp CBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHH-HHHHHHHHHH
T ss_pred ccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHH-HHHHhhcccc
Confidence 6533221 12356799999999999999999999999999999999999999987543322221 11111110 0
Q ss_pred CCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1029 PTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
...+.+. ......+.+++.+||+.+|++||++.+|++.|+++...
T Consensus 235 ~~~~~l~----------~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~ 279 (483)
T 3sv0_A 235 TSIEALC----------RGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIR 279 (483)
T ss_dssp SCHHHHH----------TTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred ccHHHHh----------cCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHH
Confidence 0000000 01124688999999999999999999999999988554
No 193
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.8e-37 Score=345.45 Aligned_cols=263 Identities=24% Similarity=0.312 Sum_probs=208.5
Q ss_pred CCCCCceEecCCcceEEEEEec-C---CcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCce-EE
Q 001274 803 NFSEGAVIGRGACGTVYKATLA-N---GEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSN-LL 877 (1109)
Q Consensus 803 ~~~~~~~lG~G~fg~Vy~~~~~-~---~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-~l 877 (1109)
.|...++||+|+||+||+|++. + +..||+|++... ......+.+.+|++++++++||||+++++++...+.. ++
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 100 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRI-TEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHV 100 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTC-CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeecccc-ccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEE
Confidence 4556689999999999999853 2 237999998632 2334457889999999999999999999999876665 99
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
||||+.+|+|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 101 v~e~~~~~~L~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~ 175 (298)
T 3pls_A 101 LLPYMCHGDLLQFIRSPQR--NPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDIL 175 (298)
T ss_dssp EECCCTTCBHHHHHHCTTC--CCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTT
T ss_pred EEecccCCCHHHHHhcccc--CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCccccc
Confidence 9999999999999987443 3899999999999999999999 7799999999999999999999999999998654
Q ss_pred CCC---CCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhh
Q 001274 958 LPY---SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELF 1034 (1109)
Q Consensus 958 ~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1109)
... ........+|+.|+|||.+.+..++.++||||+|+++|||++|..|+............+....... ..
T Consensus 176 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~--- 250 (298)
T 3pls_A 176 DREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLP--QP--- 250 (298)
T ss_dssp TGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCCCC--CC---
T ss_pred CCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCCCC--CC---
Confidence 221 1222445688999999999999999999999999999999997666544333333333333211111 00
Q ss_pred hhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCCC
Q 001274 1035 DKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSDY 1087 (1109)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~ 1087 (1109)
......+.+++.+||+.||++|||+.++++.|+++.......
T Consensus 251 -----------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~~ 292 (298)
T 3pls_A 251 -----------EYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGD 292 (298)
T ss_dssp -----------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCSC
T ss_pred -----------ccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhcc
Confidence 011235789999999999999999999999999998776443
No 194
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=2.4e-37 Score=368.94 Aligned_cols=259 Identities=21% Similarity=0.280 Sum_probs=210.7
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCC-cchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEG-ATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|...+.||+|+||+||+|+++ +|+.||+|++...... ......+.+|++++++++||||+++++++...+..|+||
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 264 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM 264 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence 57888899999999999999975 6999999999643211 123467889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccC
Q 001274 880 EYMENGSLGEQLHGNKQ-TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDL 958 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~ 958 (1109)
||++||+|.+++..... ...+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~ 341 (543)
T 3c4z_A 265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA 341 (543)
T ss_dssp CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeeccC
Confidence 99999999999976532 234899999999999999999999 77999999999999999999999999999987652
Q ss_pred CCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 959 PYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 959 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
. .......+||+.|+|||++.+..++.++||||+||++|||++|+.||.............+...........
T Consensus 342 ~-~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~~~p~------ 414 (543)
T 3c4z_A 342 G-QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPD------ 414 (543)
T ss_dssp T-CCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCCCCCT------
T ss_pred C-CcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcccCCCc------
Confidence 2 222344689999999999999999999999999999999999999998654333444444433332221111
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCH-----HHHHHHHH
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTM-----REVIAMMI 1078 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~-----~evl~~L~ 1078 (1109)
.....+.+++.+||+.||++||++ +++++|-+
T Consensus 415 --------~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~Hpf 451 (543)
T 3c4z_A 415 --------KFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPL 451 (543)
T ss_dssp --------TSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTSGG
T ss_pred --------ccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHcCcc
Confidence 112356789999999999999964 77877643
No 195
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=4.8e-37 Score=367.58 Aligned_cols=259 Identities=24% Similarity=0.324 Sum_probs=208.9
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.++||+|+||+||+|++. +++.||||++............+.+|++++++++||||+++++++...+..++||
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 100 (486)
T 3mwu_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG 100 (486)
T ss_dssp HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence 367999999999999999999975 7899999999754333344677899999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeC---CCCceEEeeccccccc
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLD---EEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~---~~~~~kl~DFG~a~~~ 956 (1109)
||+++|+|.+++..... +++..+..++.||+.||.||| +.+|+||||||+||+++ .++.+||+|||+++..
T Consensus 101 e~~~~~~L~~~~~~~~~---~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~ 174 (486)
T 3mwu_A 101 ELYTGGELFDEIIKRKR---FSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCF 174 (486)
T ss_dssp CCCCSCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTB
T ss_pred EcCCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcCeEC
Confidence 99999999999876543 899999999999999999999 77999999999999995 5668999999999866
Q ss_pred cCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK 1036 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1109)
.. ........||+.|+|||++.+ .++.++||||+||++|+|++|+.||.+.. ..+..........+......
T Consensus 175 ~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~----~~~~~~~i~~~~~~~~~~~~- 246 (486)
T 3mwu_A 175 QQ--NTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKN----EYDILKRVETGKYAFDLPQW- 246 (486)
T ss_dssp CC--C----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHTCCCSCSGGG-
T ss_pred CC--CCccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHHhCCCCCCCccc-
Confidence 42 223345679999999999876 59999999999999999999999997533 22333332222221110000
Q ss_pred hcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhh
Q 001274 1037 RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQ 1082 (1109)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 1082 (1109)
......+.+++.+||+.||++|||+.|++++-+....
T Consensus 247 ---------~~~s~~~~~li~~~L~~dp~~R~t~~~~l~hp~~~~~ 283 (486)
T 3mwu_A 247 ---------RTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKY 283 (486)
T ss_dssp ---------GGSCHHHHHHHHHHTCSSTTTSCCHHHHHHCHHHHHT
T ss_pred ---------CCCCHHHHHHHHHHcCCChhhCcCHHHHhcCHhhccC
Confidence 0112357799999999999999999999999776543
No 196
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=1.3e-37 Score=364.41 Aligned_cols=259 Identities=25% Similarity=0.348 Sum_probs=198.8
Q ss_pred HHhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC------CcchhHHHHHHHHHhccCCCCceeeEEEEEEe
Q 001274 799 EATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE------GATADNSFLAEISTLGKIRHRNIVKLYGFCYH 871 (1109)
Q Consensus 799 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 871 (1109)
...++|.+.+.||+|+||+||+|++. +++.||||++..... .......+.+|++++++++||||+++++++.
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~- 210 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD- 210 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence 34578999999999999999999865 689999999975421 1122345889999999999999999999975
Q ss_pred CCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCC---CceEEe
Q 001274 872 QDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEE---FQAHVG 948 (1109)
Q Consensus 872 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~---~~~kl~ 948 (1109)
.+..++||||+++|+|.+++..... +++..+..++.|++.||+||| +.+|+||||||+||+++.+ +.+||+
T Consensus 211 ~~~~~lv~e~~~~g~L~~~l~~~~~---~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kl~ 284 (419)
T 3i6u_A 211 AEDYYIVLELMEGGELFDKVVGNKR---LKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKIT 284 (419)
T ss_dssp SSEEEEEEECCTTCBGGGGTSSSCC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSSSCCEEEC
T ss_pred cCceEEEEEcCCCCcHHHHHhccCC---CCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCCCcceEEEe
Confidence 4557999999999999999876543 899999999999999999999 7799999999999999654 459999
Q ss_pred eccccccccCCCCCCccccccccceeccccccC---CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhh
Q 001274 949 DFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYT---MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIH 1025 (1109)
Q Consensus 949 DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~ 1025 (1109)
|||+++.... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||............+.....
T Consensus 285 DFG~a~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~ 362 (419)
T 3i6u_A 285 DFGHSKILGE--TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKY 362 (419)
T ss_dssp CSSTTTSCC-------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCC
T ss_pred ecccceecCC--CccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCC
Confidence 9999987652 223345679999999999863 56889999999999999999999999865544454444432211
Q ss_pred ccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1026 EMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
... .+.. ......+.+++.+||+.||++|||++|++++-+.
T Consensus 363 ~~~--~~~~-----------~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~ 403 (419)
T 3i6u_A 363 NFI--PEVW-----------AEVSEKALDLVKKLLVVDPKARFTTEEALRHPWL 403 (419)
T ss_dssp CCC--HHHH-----------TTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGG
T ss_pred CCC--chhh-----------cccCHHHHHHHHHHccCChhHCcCHHHHhCCccc
Confidence 110 0000 0112357899999999999999999999987553
No 197
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=5e-37 Score=349.17 Aligned_cols=255 Identities=24% Similarity=0.349 Sum_probs=209.9
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|.+.+.||+|+||.||+|++. +++.||+|++..... .....+.+.+|+.+++.++|+||+++++++.+.+..++||
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 120 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 120 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence 67889999999999999999976 588999999975432 2334567889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++++|.+++..... +++.++..++.||++||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 121 e~~~~~~L~~~~~~~~~---l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 194 (335)
T 2owb_A 121 ELCRRRSLLELHKRRKA---LTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 194 (335)
T ss_dssp CCCTTCBHHHHHHHHCS---CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred ecCCCCCHHHHHhccCC---CCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCceecccC
Confidence 99999999999876443 899999999999999999999 779999999999999999999999999999876422
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
........||+.|+|||++.+..++.++||||+|+++|||++|+.||.... ..+..............
T Consensus 195 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~~~~~~~~~~~------- 262 (335)
T 2owb_A 195 -GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC----LKETYLRIKKNEYSIPK------- 262 (335)
T ss_dssp -TCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHHTCCCCCT-------
T ss_pred -cccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCC----HHHHHHHHhcCCCCCCc-------
Confidence 222345678999999999999999999999999999999999999997532 22222221111111111
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
.....+.+++.+||+.||++||+++|++++-+...
T Consensus 263 -------~~~~~~~~li~~~l~~dp~~Rps~~ell~~~~~~~ 297 (335)
T 2owb_A 263 -------HINPVAASLIQKMLQTDPTARPTINELLNDEFFTS 297 (335)
T ss_dssp -------TSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHT
T ss_pred -------cCCHHHHHHHHHHccCChhHCcCHHHHhcCccccC
Confidence 11135678999999999999999999999876543
No 198
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=7.1e-37 Score=349.38 Aligned_cols=271 Identities=24% Similarity=0.358 Sum_probs=213.5
Q ss_pred HHHHhcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhcc--CCCCceeeEEEEEEeCC-
Q 001274 797 LLEATGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGK--IRHRNIVKLYGFCYHQD- 873 (1109)
Q Consensus 797 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~- 873 (1109)
.....++|++.+.||+|+||+||+|++. ++.||||++.. .....+.+|+++++. ++||||+++++++....
T Consensus 37 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~-----~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~ 110 (342)
T 1b6c_B 37 QRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSS-----REERSWFREAEIYQTVMLRHENILGFIAADNKDNG 110 (342)
T ss_dssp HHHHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEECG-----GGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCS
T ss_pred cccccccEEEEeeecCCCCcEEEEEEEc-CccEEEEEeCc-----hhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCC
Confidence 3445678999999999999999999984 89999999863 245667888888877 79999999999998876
Q ss_pred ---ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcC-----CCCeEecCCCCCceeeCCCCce
Q 001274 874 ---SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDC-----RPHIIHRDIKSNNILLDEEFQA 945 (1109)
Q Consensus 874 ---~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dlkp~NIll~~~~~~ 945 (1109)
..++||||+++|+|.+++.... +++..+..++.|++.||+|||... +.+|+||||||+||+++.++.+
T Consensus 111 ~~~~~~lv~e~~~~g~L~~~l~~~~----~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~ 186 (342)
T 1b6c_B 111 TWTQLWLVSDYHEHGSLFDYLNRYT----VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTC 186 (342)
T ss_dssp SCCCEEEEECCCTTCBHHHHHHHCC----BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCE
T ss_pred ccceeEEEEeecCCCcHHHHHhccC----ccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCE
Confidence 7899999999999999997642 899999999999999999999321 3589999999999999999999
Q ss_pred EEeeccccccccCCCCC---CccccccccceeccccccCC------CCCccchhHHHHHHHHHHHhC----------CCC
Q 001274 946 HVGDFGLAKLIDLPYSK---SMSAIAGSYGYIAPEYAYTM------KVTEKCDIYSFGVVLLELITG----------KSP 1006 (1109)
Q Consensus 946 kl~DFG~a~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlGvll~elltg----------~~p 1006 (1109)
||+|||+++........ ......||+.|+|||++.+. .++.++|||||||++|||++| +.|
T Consensus 187 kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p 266 (342)
T 1b6c_B 187 CIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLP 266 (342)
T ss_dssp EECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCT
T ss_pred EEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccC
Confidence 99999999876533221 22445799999999998876 234789999999999999999 788
Q ss_pred CCCcccCC-cHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1007 VQSLELGG-DLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1007 f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
|....... ....+.......... .. +.... ...+....+.+++.+||+.||++|||+.||+++|+.+.++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~-----~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~ 338 (342)
T 1b6c_B 267 YYDLVPSDPSVEEMRKVVCEQKLR-PN-IPNRW-----QSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 338 (342)
T ss_dssp TTTTSCSSCCHHHHHHHHTTSCCC-CC-CCGGG-----GTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred ccccCcCcccHHHHHHHHHHHHhC-CC-Ccccc-----cchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence 87654332 333333332222111 00 11010 13345567899999999999999999999999999987654
No 199
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.8e-37 Score=354.42 Aligned_cols=272 Identities=26% Similarity=0.323 Sum_probs=203.2
Q ss_pred HhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCc---chhHHHHHHHHHhccCCCCceeeEEEEEEeCCce
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGA---TADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSN 875 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 875 (1109)
..++|++.+.||+|+||+||+|++. +|+.||||++....... ...+.+.+|++++++++||||+++++++...+..
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI 87 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence 4578999999999999999999975 68999999997532221 1235688999999999999999999999999999
Q ss_pred EEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccc
Q 001274 876 LLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~ 955 (1109)
++||||+++ +|.+++..... .+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 88 ~lv~e~~~~-~l~~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~ 161 (346)
T 1ua2_A 88 SLVFDFMET-DLEVIIKDNSL--VLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKS 161 (346)
T ss_dssp EEEEECCSE-EHHHHHTTCCS--SCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGST
T ss_pred EEEEEcCCC-CHHHHHHhcCc--CCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEeccccee
Confidence 999999975 89888876543 3889999999999999999999 77999999999999999999999999999987
Q ss_pred ccCCCCCCccccccccceeccccccCC-CCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhh
Q 001274 956 IDLPYSKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELF 1034 (1109)
Q Consensus 956 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1109)
.... ........+|+.|+|||++.+. .++.++||||+||++|||++|..||.+......+......... +..+.+
T Consensus 162 ~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~---~~~~~~ 237 (346)
T 1ua2_A 162 FGSP-NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGT---PTEEQW 237 (346)
T ss_dssp TTSC-CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCC---CCTTTS
T ss_pred ccCC-cccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCC---CChhhh
Confidence 6522 2233456789999999998764 5899999999999999999999998754322222222221111 111111
Q ss_pred hhhcc------h--hh-----cccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1035 DKRLD------L--SA-----KRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1035 ~~~~~------~--~~-----~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
..... . .. .........+.+++.+||+.||++|||++|++++-+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~~f~~ 297 (346)
T 1ua2_A 238 PDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSN 297 (346)
T ss_dssp SSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTS
T ss_pred hhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcChhhhc
Confidence 00000 0 00 000112346889999999999999999999999876543
No 200
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=2.3e-37 Score=354.71 Aligned_cols=270 Identities=21% Similarity=0.322 Sum_probs=207.2
Q ss_pred cCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeC--------
Q 001274 802 GNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQ-------- 872 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-------- 872 (1109)
++|++.++||+|+||+||+|++ .+++.||||++............+.+|+++++.++||||+++++++...
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 96 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK 96 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence 6899999999999999999997 4789999999976655555566788999999999999999999999874
Q ss_pred CceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccc
Q 001274 873 DSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGL 952 (1109)
Q Consensus 873 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~ 952 (1109)
+..++||||+++ ++.+.+...... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 97 ~~~~lv~e~~~~-~l~~~l~~~~~~--~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 170 (351)
T 3mi9_A 97 GSIYLVFDFCEH-DLAGLLSNVLVK--FTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGL 170 (351)
T ss_dssp CEEEEEEECCSE-EHHHHHHCTTSC--CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred ceEEEEEeccCC-CHHHHHhhccCC--CCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccchh
Confidence 457899999975 787777665433 899999999999999999999 77999999999999999999999999999
Q ss_pred cccccCCC---CCCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccC
Q 001274 953 AKLIDLPY---SKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMV 1028 (1109)
Q Consensus 953 a~~~~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~ 1028 (1109)
++...... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+...... ...+.......
T Consensus 171 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~i~~~~~~~- 248 (351)
T 3mi9_A 171 ARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQ-LALISQLCGSI- 248 (351)
T ss_dssp CEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCCC-
T ss_pred cccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHhCCC-
Confidence 98764222 222345678999999999876 4589999999999999999999999986432211 12222211111
Q ss_pred CCchhhhhhcc-----------hhhcccHH------HHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1029 PTSELFDKRLD-----------LSAKRTVE------EMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1029 ~~~~~~~~~~~-----------~~~~~~~~------~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
+ .+.+..... .......+ ....+.+++.+||+.||++|||++|++++-+..
T Consensus 249 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~ 316 (351)
T 3mi9_A 249 T-PEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFW 316 (351)
T ss_dssp C-TTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGG
T ss_pred C-hhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCCCCcC
Confidence 1 111100000 00000000 123578999999999999999999999987653
No 201
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.6e-37 Score=355.49 Aligned_cols=264 Identities=24% Similarity=0.339 Sum_probs=201.4
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC------
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD------ 873 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 873 (1109)
.++|++.+.||+|+||+||+|++. +|+.||||++..........+.+.+|++++++++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 367899999999999999999974 6999999999655444445677899999999999999999999998763
Q ss_pred ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccc
Q 001274 874 SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLA 953 (1109)
Q Consensus 874 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a 953 (1109)
..|+||||+ +++|.+++... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a 175 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE----KLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLA 175 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred eEEEEEecC-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeeecc
Confidence 359999999 88999999763 2899999999999999999999 779999999999999999999999999999
Q ss_pred ccccCCCCCCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccC-CCc
Q 001274 954 KLIDLPYSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMV-PTS 1031 (1109)
Q Consensus 954 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~-~~~ 1031 (1109)
+.... ......+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.. ..+.+........ +..
T Consensus 176 ~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~----~~~~l~~i~~~~g~~~~ 247 (367)
T 1cm8_A 176 RQADS----EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSD----HLDQLKEIMKVTGTPPA 247 (367)
T ss_dssp EECCS----SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHHHCCCCH
T ss_pred ccccc----ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHHHhcCCCCH
Confidence 87542 2345678999999999887 679999999999999999999999998543 2222222221111 111
Q ss_pred hhhhhhcch---------------h-hcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1032 ELFDKRLDL---------------S-AKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1032 ~~~~~~~~~---------------~-~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
+........ . ..........+.+++.+|++.||++|||++|++++-+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~ 312 (367)
T 1cm8_A 248 EFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFE 312 (367)
T ss_dssp HHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGT
T ss_pred HHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcChHHH
Confidence 111100000 0 000112234678999999999999999999999986543
No 202
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=340.13 Aligned_cols=259 Identities=22% Similarity=0.275 Sum_probs=202.8
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC--CcchhHHHHHHHHHhccCCCCceeeEEEEEE--eCCce
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE--GATADNSFLAEISTLGKIRHRNIVKLYGFCY--HQDSN 875 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~ 875 (1109)
.++|++.+.||+|+||.||+|++. +++.||+|+++.... .....+.+.+|++++++++||||+++++++. ..+..
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 478999999999999999999975 689999999974321 1234567999999999999999999999984 44578
Q ss_pred EEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccc
Q 001274 876 LLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~ 955 (1109)
++||||++++ +.+++..... ..+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||.+..
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~ 158 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVPE-KRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEA 158 (305)
T ss_dssp EEEEECCSEE-HHHHHHHSTT-CSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEehhccCC-HHHHHHhCcc-cccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeeccccccc
Confidence 9999999876 7777765432 24899999999999999999999 77999999999999999999999999999987
Q ss_pred ccCCC-CCCccccccccceeccccccCCC--CCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCch
Q 001274 956 IDLPY-SKSMSAIAGSYGYIAPEYAYTMK--VTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSE 1032 (1109)
Q Consensus 956 ~~~~~-~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1109)
..... ........||+.|+|||++.+.. ++.++||||+|+++|||++|+.||.... .............+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----~~~~~~~i~~~~~~~~- 233 (305)
T 2wtk_C 159 LHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN----IYKLFENIGKGSYAIP- 233 (305)
T ss_dssp CCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS----HHHHHHHHHHCCCCCC-
T ss_pred cCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHhcCCCCCC-
Confidence 64221 22224556899999999987654 4789999999999999999999997532 2222222222211111
Q ss_pred hhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhh
Q 001274 1033 LFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQ 1082 (1109)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 1082 (1109)
......+.+++.+||+.||++|||++|++++-+....
T Consensus 234 -------------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~ 270 (305)
T 2wtk_C 234 -------------GDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKK 270 (305)
T ss_dssp -------------SSSCHHHHHHHHHHTCSSTTTSCCHHHHHHSHHHHSC
T ss_pred -------------CccCHHHHHHHHHHccCChhhCCCHHHHhcCcccccC
Confidence 1112357799999999999999999999998766543
No 203
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=2e-37 Score=346.59 Aligned_cols=261 Identities=26% Similarity=0.378 Sum_probs=204.3
Q ss_pred cCCCCCceEecCCcceEEEEEecC----CcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEe-CCceE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLAN----GEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYH-QDSNL 876 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~ 876 (1109)
.+|++.++||+|+||+||+|++.+ ...||+|++... ......+.+.+|++++++++||||+++++++.. ++..+
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI-TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTC-CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccC-CCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 468888999999999999998642 235889988642 233445778999999999999999999998654 55779
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
+||||+++|+|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.++..
T Consensus 104 ~v~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~ 178 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRNETH--NPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 178 (298)
T ss_dssp EEEECCTTCBHHHHHHCTTC--CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCC
T ss_pred EEEeCCCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECcccccccc
Confidence 99999999999999976543 3899999999999999999999 779999999999999999999999999999866
Q ss_pred cCCCC---CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhC-CCCCCCcccCCcHHHHHHHhhhccCCCch
Q 001274 957 DLPYS---KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITG-KSPVQSLELGGDLVTWVRRSIHEMVPTSE 1032 (1109)
Q Consensus 957 ~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg-~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1109)
..... .......+|+.|+|||++.+..++.++||||+|+++|||++| ..||.... .......+........ .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~- 254 (298)
T 3f66_A 179 YDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN-TFDITVYLLQGRRLLQ--P- 254 (298)
T ss_dssp SCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSC-TTTHHHHHHTTCCCCC--C-
T ss_pred cccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCC-HHHHHHHHhcCCCCCC--C-
Confidence 43221 122345678899999999999999999999999999999994 55555433 2233222222111110 0
Q ss_pred hhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccC
Q 001274 1033 LFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVS 1085 (1109)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~ 1085 (1109)
......+.+++.+||+.||++|||+.|+++.|+.+.....
T Consensus 255 -------------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~ 294 (298)
T 3f66_A 255 -------------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI 294 (298)
T ss_dssp -------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSC
T ss_pred -------------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhc
Confidence 0012357899999999999999999999999999877553
No 204
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.3e-37 Score=354.70 Aligned_cols=263 Identities=25% Similarity=0.287 Sum_probs=204.6
Q ss_pred HhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC-----CCceeeEEEEEEeCC
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR-----HRNIVKLYGFCYHQD 873 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~l~~~~~~~~ 873 (1109)
..++|++.++||+|+||+||+|++. +++.||||+++. .......+..|+++++.++ ||||+++++++...+
T Consensus 33 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~ 109 (360)
T 3llt_A 33 LNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN---IKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYD 109 (360)
T ss_dssp ETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETT
T ss_pred ecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc---chhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECC
Confidence 3478999999999999999999974 689999999962 2334566788999998886 999999999999999
Q ss_pred ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC------------
Q 001274 874 SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE------------ 941 (1109)
Q Consensus 874 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~------------ 941 (1109)
..++||||+ +++|.+++...... .+++..+..++.||+.||+||| +.+|+||||||+||+++.
T Consensus 110 ~~~lv~e~~-~~~L~~~~~~~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~~~~~~ 184 (360)
T 3llt_A 110 HMCLIFEPL-GPSLYEIITRNNYN-GFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFEKSLITVRR 184 (360)
T ss_dssp EEEEEECCC-CCBHHHHHHHTTTC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCCEEEEEEEC
T ss_pred eeEEEEcCC-CCCHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEccccccccccchhc
Confidence 999999999 99999999865432 3899999999999999999999 779999999999999975
Q ss_pred -------------CCceEEeeccccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCC
Q 001274 942 -------------EFQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQ 1008 (1109)
Q Consensus 942 -------------~~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~ 1008 (1109)
++.+||+|||+++.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.
T Consensus 185 ~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~ 260 (360)
T 3llt_A 185 VTDGKKIQIYRTKSTGIKLIDFGCATFKSD----YHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFR 260 (360)
T ss_dssp TTTCCEEEEEEESCCCEEECCCTTCEETTS----CCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred ccccccccccccCCCCEEEEeccCceecCC----CCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCC
Confidence 78999999999986442 2345678999999999999999999999999999999999999997
Q ss_pred CcccCCcHHHHHHHhhhccCCCchhhhhhcc-----------------hhh--------------cccHHHHHHHHHHHH
Q 001274 1009 SLELGGDLVTWVRRSIHEMVPTSELFDKRLD-----------------LSA--------------KRTVEEMTLFLKIAL 1057 (1109)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~--------------~~~~~~~~~~~~li~ 1057 (1109)
.....+ ....+.... ...+ ......... ... .........+.+++.
T Consensus 261 ~~~~~~-~~~~~~~~~-~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~ 337 (360)
T 3llt_A 261 THEHME-HLAMMESII-QPIP-KNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLY 337 (360)
T ss_dssp CSSHHH-HHHHHHHHT-CCCC-HHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHH
T ss_pred CCcHHH-HHHHHHHhc-CCCC-HHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHH
Confidence 543211 111111111 1111 000000000 000 000001146779999
Q ss_pred hccCCCCCCCCCHHHHHHHH
Q 001274 1058 FCSSTSPLNRPTMREVIAMM 1077 (1109)
Q Consensus 1058 ~cl~~dP~~RPt~~evl~~L 1077 (1109)
+||+.||++|||++|++++-
T Consensus 338 ~~L~~dP~~Rpta~elL~hp 357 (360)
T 3llt_A 338 SILQIDPTLRPSPAELLKHK 357 (360)
T ss_dssp HHCCSSGGGSCCHHHHTTSG
T ss_pred HHhcCChhhCCCHHHHhcCc
Confidence 99999999999999998764
No 205
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=378.39 Aligned_cols=255 Identities=21% Similarity=0.333 Sum_probs=202.4
Q ss_pred eEecCCcceEEEEEec---CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEEeccCC
Q 001274 809 VIGRGACGTVYKATLA---NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEYMENG 885 (1109)
Q Consensus 809 ~lG~G~fg~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g 885 (1109)
+||+|+||+||+|.+. ++..||||+++.. ......+.+.+|++++++++||||+++++++.. +..++||||+++|
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~-~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g 420 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG-TEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGG 420 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCC-CSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTC
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCC-CChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCC
Confidence 7999999999999764 4667999999744 223456789999999999999999999999876 5689999999999
Q ss_pred CHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCCCC--C
Q 001274 886 SLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPYSK--S 963 (1109)
Q Consensus 886 sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~--~ 963 (1109)
+|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++........ .
T Consensus 421 ~L~~~l~~~~~--~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~ 495 (613)
T 2ozo_A 421 PLHKFLVGKRE--EIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTA 495 (613)
T ss_dssp BHHHHHTTCTT--TSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------
T ss_pred cHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeee
Confidence 99999976543 3899999999999999999999 779999999999999999999999999999876432211 1
Q ss_pred ccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcchhh
Q 001274 964 MSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDLSA 1042 (1109)
Q Consensus 964 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1109)
.....+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+... ......+........
T Consensus 496 ~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~-~~~~~~i~~~~~~~~-------------- 560 (613)
T 2ozo_A 496 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG-PEVMAFIEQGKRMEC-------------- 560 (613)
T ss_dssp ------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCS-HHHHHHHHTTCCCCC--------------
T ss_pred ccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHHHcCCCCCC--------------
Confidence 123345789999999999999999999999999999998 9999986432 122222221111000
Q ss_pred cccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCCC
Q 001274 1043 KRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSDY 1087 (1109)
Q Consensus 1043 ~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~ 1087 (1109)
.......+.+++.+||+.||++||++.++++.|+.........
T Consensus 561 --p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~~ 603 (613)
T 2ozo_A 561 --PPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASK 603 (613)
T ss_dssp --CTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSCS
T ss_pred --CCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhccc
Confidence 1112246789999999999999999999999999987776443
No 206
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=5.6e-38 Score=378.73 Aligned_cols=258 Identities=28% Similarity=0.410 Sum_probs=209.4
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEEe
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEY 881 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 881 (1109)
++|++.++||+|+||+||+|+++++..||||+++... ...+.|.+|++++++++|+||+++++++.+ +..++||||
T Consensus 267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~ 342 (535)
T 2h8h_A 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT---MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 342 (535)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS---SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC---CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeeh
Confidence 5688889999999999999999888889999997432 235679999999999999999999999876 678999999
Q ss_pred ccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCCC
Q 001274 882 MENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPYS 961 (1109)
Q Consensus 882 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~ 961 (1109)
+++|+|.+++..... ..+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++.......
T Consensus 343 ~~~gsL~~~l~~~~~-~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~ 418 (535)
T 2h8h_A 343 MSKGSLLDFLKGETG-KYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY 418 (535)
T ss_dssp CTTEEHHHHHSHHHH-TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHH
T ss_pred hcCCcHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCce
Confidence 999999999975321 23899999999999999999999 77999999999999999999999999999986643222
Q ss_pred CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcch
Q 001274 962 KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDL 1040 (1109)
Q Consensus 962 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1109)
.......++..|+|||++.+..++.++|||||||++|||++ |+.||.+.. ..+.......... ..
T Consensus 419 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~----~~~~~~~i~~~~~-~~--------- 484 (535)
T 2h8h_A 419 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV----NREVLDQVERGYR-MP--------- 484 (535)
T ss_dssp HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCC----HHHHHHHHHTTCC-CC---------
T ss_pred ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC----HHHHHHHHHcCCC-CC---------
Confidence 22234457889999999999999999999999999999999 999997543 1222222111110 00
Q ss_pred hhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1041 SAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1041 ~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
........+.++|.+||+.||++|||+++|++.|+.+....
T Consensus 485 ---~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~ 525 (535)
T 2h8h_A 485 ---CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST 525 (535)
T ss_dssp ---CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCC
T ss_pred ---CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhcc
Confidence 01112245789999999999999999999999999876543
No 207
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=4.4e-37 Score=348.59 Aligned_cols=263 Identities=24% Similarity=0.405 Sum_probs=207.7
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEE--EEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVI--AVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNLL 877 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~v--avK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 877 (1109)
++|++.+.||+|+||.||+|++. +++.+ |||.++.. ......+.+.+|+++++++ +||||+++++++...+..++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l 103 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY-ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL 103 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccc-cchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEE
Confidence 57889999999999999999865 56644 99988743 2233456789999999999 89999999999999999999
Q ss_pred EEEeccCCCHHHHhccCC-------------CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCc
Q 001274 878 LYEYMENGSLGEQLHGNK-------------QTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQ 944 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~ 944 (1109)
||||+++|+|.+++.... ....+++..+..++.||+.||+||| +.+|+||||||+||+++.++.
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~ 180 (327)
T 1fvr_A 104 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYV 180 (327)
T ss_dssp EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGC
T ss_pred EEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCe
Confidence 999999999999997653 1234899999999999999999999 779999999999999999999
Q ss_pred eEEeeccccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHh
Q 001274 945 AHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRS 1023 (1109)
Q Consensus 945 ~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~ 1023 (1109)
+||+|||+++.... ........+++.|+|||++.+..++.++||||+|+++|||++ |+.||.+.. ..+.....
T Consensus 181 ~kL~Dfg~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~----~~~~~~~~ 254 (327)
T 1fvr_A 181 AKIADFGLSRGQEV--YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT----CAELYEKL 254 (327)
T ss_dssp EEECCTTCEESSCE--ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC----HHHHHHHG
T ss_pred EEEcccCcCccccc--cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCc----HHHHHHHh
Confidence 99999999974331 122233457889999999998889999999999999999998 999997533 22222222
Q ss_pred hhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCCC
Q 001274 1024 IHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSDY 1087 (1109)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~ 1087 (1109)
...... . ........+.+++.+||+.||++|||++|++++|..+.......
T Consensus 255 ~~~~~~-~------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~ 305 (327)
T 1fvr_A 255 PQGYRL-E------------KPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKTY 305 (327)
T ss_dssp GGTCCC-C------------CCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSSCS
T ss_pred hcCCCC-C------------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhcCc
Confidence 111110 0 01111235789999999999999999999999999988766443
No 208
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=7.2e-37 Score=339.51 Aligned_cols=253 Identities=23% Similarity=0.323 Sum_probs=208.0
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.+.||+|+||+||+|+.. +++.||||++..... .....+.+.+|++++++++||||+++++++...+..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 57889999999999999999975 678999999964321 1123467889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++|+|.+++..... +++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 94 e~~~~~~L~~~l~~~~~---~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~- 166 (284)
T 2vgo_A 94 EFAPRGELYKELQKHGR---FDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPS- 166 (284)
T ss_dssp CCCTTEEHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSS-
T ss_pred EeCCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCcc-
Confidence 99999999999976543 899999999999999999999 78999999999999999999999999999976542
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
.......|++.|+|||++.+..++.++||||+|+++|||++|+.||.... ..+.............
T Consensus 167 --~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~~~~~~~~~~-------- 232 (284)
T 2vgo_A 167 --LRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPS----HTETHRRIVNVDLKFP-------- 232 (284)
T ss_dssp --SCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHTTCCCCC--------
T ss_pred --cccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCC----HhHHHHHHhccccCCC--------
Confidence 22344678999999999999999999999999999999999999997532 2222222222111111
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
......+.+++.+|++.||++||++.|++++-+...
T Consensus 233 ------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h~~~~~ 268 (284)
T 2vgo_A 233 ------PFLSDGSKDLISKLLRYHPPQRLPLKGVMEHPWVKA 268 (284)
T ss_dssp ------TTSCHHHHHHHHHHSCSSGGGSCCHHHHHTCHHHHH
T ss_pred ------CcCCHHHHHHHHHHhhcCHhhCCCHHHHhhCHHHHh
Confidence 011235679999999999999999999999876554
No 209
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=4.8e-37 Score=340.99 Aligned_cols=255 Identities=25% Similarity=0.319 Sum_probs=199.1
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|.+.++||+|+||+||+|+.. +++.||+|++..... ....+.+.+|++++++++||||+++++++...+..++|||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 100 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRS-QVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME 100 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGC-CSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeecccc-chhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence 57889999999999999999865 689999999975532 2345778999999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCC-CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee---CCCCceEEeeccccccc
Q 001274 881 YMENGSLGEQLHGNK-QTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL---DEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kl~DFG~a~~~ 956 (1109)
|+++|+|.+++.... ....+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||+++..
T Consensus 101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~ 177 (285)
T 3is5_A 101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELF 177 (285)
T ss_dssp CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-
T ss_pred eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceec
Confidence 999999999985431 1123899999999999999999999 7799999999999999 45688999999999865
Q ss_pred cCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK 1036 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1109)
.. ........||+.|+|||++. +.++.++||||+|+++|||++|+.||.+.. ..+............... ..
T Consensus 178 ~~--~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~----~~~~~~~~~~~~~~~~~~-~~ 249 (285)
T 3is5_A 178 KS--DEHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTS----LEEVQQKATYKEPNYAVE-CR 249 (285)
T ss_dssp -----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCCCCCCC---C
T ss_pred CC--cccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCC----HHHHHhhhccCCcccccc-cC
Confidence 42 22234567899999999875 568999999999999999999999997532 222222211111111000 00
Q ss_pred hcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1037 RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
.....+.+++.+||+.||++|||++|++++-+
T Consensus 250 ----------~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~ 281 (285)
T 3is5_A 250 ----------PLTPQAVDLLKQMLTKDPERRPSAAQVLHHEW 281 (285)
T ss_dssp ----------CCCHHHHHHHHHHTCSCTTTSCCHHHHHTSGG
T ss_pred ----------cCCHHHHHHHHHHccCChhhCcCHHHHhcCHH
Confidence 01235678999999999999999999997643
No 210
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=357.20 Aligned_cols=267 Identities=15% Similarity=0.166 Sum_probs=208.0
Q ss_pred cCCCCCceEecCCcceEEEEEecC---------CcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceee--------
Q 001274 802 GNFSEGAVIGRGACGTVYKATLAN---------GEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVK-------- 864 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------- 864 (1109)
++|++.+.||+|+||+||+|++.. ++.||||++... +.+.+|++++++++||||++
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-------~~~~~E~~~l~~l~h~niv~~~~~~~~~ 114 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-------GRLFNEQNFFQRAAKPLQVNKWKKLYST 114 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-------STHHHHHHHHHHHCCHHHHHHHHHHTTC
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-------chHHHHHHHHHHhcccchhhhhhhhccC
Confidence 689999999999999999998763 789999998732 46889999999999999887
Q ss_pred -------EEEEEEe-CCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCc
Q 001274 865 -------LYGFCYH-QDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNN 936 (1109)
Q Consensus 865 -------l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~N 936 (1109)
+++++.. .+..++||||+ +++|.+++..... ..+++..+..++.||+.||+||| +.+|+||||||+|
T Consensus 115 ~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~-~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~N 189 (352)
T 2jii_A 115 PLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPK-HVLSERSVLQVACRLLDALEFLH---ENEYVHGNVTAEN 189 (352)
T ss_dssp TTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCGGG
T ss_pred CccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCc-CCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHH
Confidence 6777776 67789999999 9999999986521 24999999999999999999999 7799999999999
Q ss_pred eeeCCCC--ceEEeeccccccccCCCC------CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCC
Q 001274 937 ILLDEEF--QAHVGDFGLAKLIDLPYS------KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQ 1008 (1109)
Q Consensus 937 Ill~~~~--~~kl~DFG~a~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~ 1008 (1109)
|+++.++ .+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.
T Consensus 190 Il~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~ 269 (352)
T 2jii_A 190 IFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWT 269 (352)
T ss_dssp EEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTG
T ss_pred EEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence 9999998 999999999986643211 11234579999999999999999999999999999999999999998
Q ss_pred CcccCCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCCC
Q 001274 1009 SLELGGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSDY 1087 (1109)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~ 1087 (1109)
.................... ......... .......+.+++.+||+.||++||+++++++.|+++.......
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~~ 341 (352)
T 2jii_A 270 NCLPNTEDIMKQKQKFVDKP--GPFVGPCGH-----WIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLRVS 341 (352)
T ss_dssp GGTTCHHHHHHHHHHHHHSC--CCEECTTSC-----EECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred cCCcCHHHHHHHHHhccCCh--hhhhhhccc-----cCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcCCC
Confidence 65422221111111111111 111110000 0011245789999999999999999999999999998776433
No 211
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=5.3e-37 Score=368.75 Aligned_cols=258 Identities=26% Similarity=0.322 Sum_probs=206.7
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCc-----------chhHHHHHHHHHhccCCCCceeeEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGA-----------TADNSFLAEISTLGKIRHRNIVKLYGF 868 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~-----------~~~~~~~~E~~~l~~l~h~niv~l~~~ 868 (1109)
.++|++.++||+|+||+||+|++. +++.||||++....... ...+.+.+|++++++++||||++++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 468999999999999999999975 68899999997543221 235678999999999999999999999
Q ss_pred EEeCCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCC---ce
Q 001274 869 CYHQDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEF---QA 945 (1109)
Q Consensus 869 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~---~~ 945 (1109)
+.+.+..++||||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++ .+
T Consensus 115 ~~~~~~~~lv~e~~~gg~L~~~l~~~~~---~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~ 188 (504)
T 3q5i_A 115 FEDKKYFYLVTEFYEGGELFEQIINRHK---FDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNI 188 (504)
T ss_dssp EECSSEEEEEEECCTTCBHHHHHHHHSC---CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCCSSE
T ss_pred EEcCCEEEEEEecCCCCcHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCCccE
Confidence 9999999999999999999999876543 899999999999999999999 77999999999999998776 69
Q ss_pred EEeeccccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhh
Q 001274 946 HVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIH 1025 (1109)
Q Consensus 946 kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~ 1025 (1109)
||+|||+++.... ........||+.|+|||++. +.++.++||||+||++|+|++|+.||.+.. ..+.+.....
T Consensus 189 kl~Dfg~a~~~~~--~~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~----~~~~~~~i~~ 261 (504)
T 3q5i_A 189 KIVDFGLSSFFSK--DYKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQN----DQDIIKKVEK 261 (504)
T ss_dssp EECCCTTCEECCT--TSCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHH
T ss_pred EEEECCCCEEcCC--CCccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHHc
Confidence 9999999987653 23345567999999999876 469999999999999999999999997532 2333333322
Q ss_pred ccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1026 EMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
..........+ .....+.+++.+|++.||++|||++|++++-+-..
T Consensus 262 ~~~~~~~~~~~----------~~s~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~ 307 (504)
T 3q5i_A 262 GKYYFDFNDWK----------NISDEAKELIKLMLTYDYNKRCTAEEALNSRWIKK 307 (504)
T ss_dssp CCCCCCHHHHT----------TSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHH
T ss_pred CCCCCCccccC----------CCCHHHHHHHHHHcCCChhHCCCHHHHhcCHhhhh
Confidence 22211110000 11235779999999999999999999999877654
No 212
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=1.8e-37 Score=345.58 Aligned_cols=259 Identities=23% Similarity=0.331 Sum_probs=205.5
Q ss_pred cCCCCCc-eEecCCcceEEEEEec---CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEE
Q 001274 802 GNFSEGA-VIGRGACGTVYKATLA---NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLL 877 (1109)
Q Consensus 802 ~~~~~~~-~lG~G~fg~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 877 (1109)
++|.+.+ .||+|+||+||+|.+. .++.||||+++.........+.+.+|+++++.++||||+++++++ ..+..++
T Consensus 16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~l 94 (291)
T 1xbb_A 16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWML 94 (291)
T ss_dssp GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEE
T ss_pred hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEE
Confidence 5677777 9999999999999642 468899999976544444567899999999999999999999998 5677899
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
||||+++++|.+++..... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 95 v~e~~~~~~L~~~l~~~~~---~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 168 (291)
T 1xbb_A 95 VMEMAELGPLNKYLQQNRH---VKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALR 168 (291)
T ss_dssp EEECCTTEEHHHHHHHCTT---CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEeCCCCCHHHHHHhCcC---CCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcceeec
Confidence 9999999999999987543 899999999999999999999 7799999999999999999999999999998765
Q ss_pred CCCCC--CccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhh
Q 001274 958 LPYSK--SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELF 1034 (1109)
Q Consensus 958 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1109)
..... ......+++.|+|||++.+..++.++||||+|+++|||++ |+.||..... .+..........+. .
T Consensus 169 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~----~~~~~~~~~~~~~~---~ 241 (291)
T 1xbb_A 169 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG----SEVTAMLEKGERMG---C 241 (291)
T ss_dssp TTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCH----HHHHHHHHTTCCCC---C
T ss_pred cCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHHHcCCCCC---C
Confidence 32221 1123346789999999998889999999999999999999 9999985431 11111111111100 0
Q ss_pred hhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1035 DKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
.......+.+++.+||+.||++||++.++++.|+......
T Consensus 242 ----------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~ 281 (291)
T 1xbb_A 242 ----------PAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV 281 (291)
T ss_dssp ----------CTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence 1112245789999999999999999999999999887654
No 213
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=3e-37 Score=366.84 Aligned_cols=273 Identities=22% Similarity=0.274 Sum_probs=191.6
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeC-----Cce
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQ-----DSN 875 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~ 875 (1109)
++|++.++||+|+||+||+|++. +++.||||++..........+.+.+|++++++++||||+++++++... ...
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 132 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL 132 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence 68999999999999999999865 689999999975544555567899999999999999999999998543 467
Q ss_pred EEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccc
Q 001274 876 LLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~ 955 (1109)
|+||||+ +|+|.+++..... +++..+..++.||+.||+||| +.+||||||||+|||++.++.+||+|||+|+.
T Consensus 133 ~lv~e~~-~~~L~~~~~~~~~---l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~ 205 (458)
T 3rp9_A 133 YVVLEIA-DSDFKKLFRTPVY---LTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLART 205 (458)
T ss_dssp EEEECCC-SEEHHHHHHSSCC---CCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEecc-ccchhhhcccCCC---CCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeecccccchh
Confidence 9999998 5799999976543 899999999999999999999 77999999999999999999999999999987
Q ss_pred ccCCCC--------------------------CCccccccccceeccccc-cCCCCCccchhHHHHHHHHHHHh------
Q 001274 956 IDLPYS--------------------------KSMSAIAGSYGYIAPEYA-YTMKVTEKCDIYSFGVVLLELIT------ 1002 (1109)
Q Consensus 956 ~~~~~~--------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwSlGvll~ellt------ 1002 (1109)
...... ......+||+.|+|||++ .+..|+.++||||+||++|||++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~ 285 (458)
T 3rp9_A 206 VDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENV 285 (458)
T ss_dssp TTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTC
T ss_pred ccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhccccc
Confidence 642211 123456789999999986 46679999999999999999999
Q ss_pred -----CCCCCCCcccCC----------------cHHHHHHHhhhcc-CCCchhhhhhcch----------------hhcc
Q 001274 1003 -----GKSPVQSLELGG----------------DLVTWVRRSIHEM-VPTSELFDKRLDL----------------SAKR 1044 (1109)
Q Consensus 1003 -----g~~pf~~~~~~~----------------~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~ 1044 (1109)
|+.+|.+..... ...+.+....... .+..+.+...... -...
T Consensus 286 ~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (458)
T 3rp9_A 286 AYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAER 365 (458)
T ss_dssp SSGGGCCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGG
T ss_pred cccccccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHH
Confidence 555565422100 0011111111100 0111111000000 0000
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1045 TVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1045 ~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
.......+.+++.+||..||++|||++|+++|-+...
T Consensus 366 ~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~Hp~f~~ 402 (458)
T 3rp9_A 366 FPASSADAIHLLKRMLVFNPNKRITINECLAHPFFKE 402 (458)
T ss_dssp STTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTT
T ss_pred CCCCCHHHHHHHHHHhccCccccCCHHHHhcCHhhhh
Confidence 1112346789999999999999999999999876543
No 214
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=7.7e-37 Score=344.96 Aligned_cols=260 Identities=22% Similarity=0.266 Sum_probs=198.7
Q ss_pred cCCCCC-ceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceEEE
Q 001274 802 GNFSEG-AVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 802 ~~~~~~-~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 878 (1109)
++|++. +.||+|+||+||+|++. +++.||||++.... ....+.+.+|++++.++ +||||+++++++...+..++|
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv 89 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQP--GHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLV 89 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCS--SCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCc--chhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEE
Confidence 467774 78999999999999864 78999999997443 23456789999999885 799999999999999999999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCc---eEEeecccccc
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQ---AHVGDFGLAKL 955 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~---~kl~DFG~a~~ 955 (1109)
|||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++. +||+|||+++.
T Consensus 90 ~e~~~~~~L~~~l~~~~~---~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~ 163 (316)
T 2ac3_A 90 FEKMRGGSILSHIHKRRH---FNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSG 163 (316)
T ss_dssp EECCTTCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-
T ss_pred EEcCCCCcHHHHHhccCC---CCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCccc
Confidence 999999999999976543 899999999999999999999 779999999999999988776 99999999976
Q ss_pred ccCCCC------CCccccccccceeccccccC-----CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCc---------
Q 001274 956 IDLPYS------KSMSAIAGSYGYIAPEYAYT-----MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGD--------- 1015 (1109)
Q Consensus 956 ~~~~~~------~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~--------- 1015 (1109)
...... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~ 243 (316)
T 2ac3_A 164 IKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACP 243 (316)
T ss_dssp ------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCH
T ss_pred cccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccch
Confidence 532111 11234469999999999875 5689999999999999999999999986532210
Q ss_pred --HHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1016 --LVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1016 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
................... .......+.+++.+||+.||++|||++|++++-+.
T Consensus 244 ~~~~~~~~~i~~~~~~~~~~~----------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~ 299 (316)
T 2ac3_A 244 ACQNMLFESIQEGKYEFPDKD----------WAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWV 299 (316)
T ss_dssp HHHHHHHHHHHHCCCCCCHHH----------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSTTC
T ss_pred hHHHHHHHHHhccCcccCchh----------cccCCHHHHHHHHHHhhCChhhCCCHHHHhcChhh
Confidence 0111111111111111000 00112457899999999999999999999987553
No 215
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=4.4e-37 Score=343.99 Aligned_cols=269 Identities=25% Similarity=0.344 Sum_probs=204.5
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|++.+.||+|+||+||+|++. +++.||||++..........+.+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57889999999999999999976 68999999997554444445778899999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
|++ ++|.+++...... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.++......
T Consensus 83 ~~~-~~L~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~ 157 (299)
T 2r3i_A 83 FLH-QDLKKFMDASALT-GIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV 157 (299)
T ss_dssp CCS-EEHHHHHHHTTTT-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred ccc-CCHHHHHHhhhcc-CCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc
Confidence 997 6999999765422 3889999999999999999999 7799999999999999999999999999998765322
Q ss_pred CCCccccccccceeccccccCCC-CCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhh----
Q 001274 961 SKSMSAIAGSYGYIAPEYAYTMK-VTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFD---- 1035 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 1035 (1109)
.......+|+.|+|||++.+.. ++.++||||+|+++|||++|+.||.+....+......+.... +....+.
T Consensus 158 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 233 (299)
T 2r3i_A 158 -RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGT---PDEVVWPGVTS 233 (299)
T ss_dssp -BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCC---CCTTTSTTGGG
T ss_pred -cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCC---CchhhhhHhhc
Confidence 2233456899999999998765 799999999999999999999999864322222222221110 0000000
Q ss_pred -----hhcch----h-hcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1036 -----KRLDL----S-AKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1036 -----~~~~~----~-~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
..... . ..........+.+++.+|++.||++|||+.|++++-+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~hp~~ 287 (299)
T 2r3i_A 234 MPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFF 287 (299)
T ss_dssp STTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGG
T ss_pred CcccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcChhh
Confidence 00000 0 00001123457899999999999999999999987554
No 216
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=1.9e-36 Score=348.17 Aligned_cols=259 Identities=23% Similarity=0.344 Sum_probs=207.3
Q ss_pred HHHhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCc------chhHHHHHHHHHhccC-CCCceeeEEEEE
Q 001274 798 LEATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGA------TADNSFLAEISTLGKI-RHRNIVKLYGFC 869 (1109)
Q Consensus 798 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~------~~~~~~~~E~~~l~~l-~h~niv~l~~~~ 869 (1109)
....++|++.+.||+|+||.||+|++. +|+.||||++....... ...+.+.+|+.+++++ +||||+++++++
T Consensus 90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 169 (365)
T 2y7j_A 90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY 169 (365)
T ss_dssp HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence 345578999999999999999999975 79999999997543221 1135678999999999 899999999999
Q ss_pred EeCCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEee
Q 001274 870 YHQDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGD 949 (1109)
Q Consensus 870 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~D 949 (1109)
...+..++||||+++++|.+++..... +++..+..++.||+.||.||| +.+|+||||||+||+++.++.+||+|
T Consensus 170 ~~~~~~~lv~e~~~g~~L~~~l~~~~~---l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~~~~ikl~D 243 (365)
T 2y7j_A 170 ESSSFMFLVFDLMRKGELFDYLTEKVA---LSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIRLSD 243 (365)
T ss_dssp EBSSEEEEEECCCTTCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECC
T ss_pred eeCCEEEEEEEeCCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEEe
Confidence 999999999999999999999976433 899999999999999999999 77999999999999999999999999
Q ss_pred ccccccccCCCCCCccccccccceeccccccC------CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHh
Q 001274 950 FGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYT------MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRS 1023 (1109)
Q Consensus 950 FG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~ 1023 (1109)
||++..... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.... ........
T Consensus 244 fG~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~----~~~~~~~i 317 (365)
T 2y7j_A 244 FGFSCHLEP--GEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRR----QILMLRMI 317 (365)
T ss_dssp CTTCEECCT--TCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHH
T ss_pred cCcccccCC--CcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCC----HHHHHHHH
Confidence 999987652 223345679999999998863 358899999999999999999999997532 22222222
Q ss_pred hhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1024 IHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
............ ......+.+++.+||+.||++|||+.|++++-+
T Consensus 318 ~~~~~~~~~~~~----------~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~ 362 (365)
T 2y7j_A 318 MEGQYQFSSPEW----------DDRSSTVKDLISRLLQVDPEARLTAEQALQHPF 362 (365)
T ss_dssp HHTCCCCCHHHH----------SSSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGG
T ss_pred HhCCCCCCCccc----------ccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcc
Confidence 222111110000 011235779999999999999999999998743
No 217
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=9.2e-37 Score=342.20 Aligned_cols=255 Identities=24% Similarity=0.296 Sum_probs=206.0
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|.+.+.||+|+||+||+|++. +++.||+|+++.... ...+.+.+|++++++++||||+++++++...+..++||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA--FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVM 85 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC--------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc--cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEE
Confidence 357889999999999999999975 789999999974322 23456889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee---CCCCceEEeeccccccc
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL---DEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kl~DFG~a~~~ 956 (1109)
||+++++|.+++...+. +++..+..++.|++.|++||| +.+|+||||||+||++ +.++.+||+|||.++..
T Consensus 86 e~~~~~~L~~~l~~~~~---~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~ 159 (304)
T 2jam_A 86 QLVSGGELFDRILERGV---YTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKME 159 (304)
T ss_dssp CCCCSCBHHHHHHHHSC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCC
T ss_pred EcCCCccHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcceec
Confidence 99999999999876543 899999999999999999999 7799999999999999 78899999999999754
Q ss_pred cCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK 1036 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1109)
.. .......||+.|+|||++.+..++.++||||+|+++|||++|+.||.... ....................
T Consensus 160 ~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~i~~~~~~~~~~~~- 231 (304)
T 2jam_A 160 QN---GIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEET----ESKLFEKIKEGYYEFESPFW- 231 (304)
T ss_dssp CC---BTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSC----HHHHHHHHHHCCCCCCTTTT-
T ss_pred CC---CccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC----HHHHHHHHHcCCCCCCcccc-
Confidence 32 22344568999999999999999999999999999999999999997532 22222222222211111110
Q ss_pred hcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1037 RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
......+.+++.+|++.||++|||+.|++++-+..
T Consensus 232 ---------~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~ 266 (304)
T 2jam_A 232 ---------DDISESAKDFICHLLEKDPNERYTCEKALSHPWID 266 (304)
T ss_dssp ---------TTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHH
T ss_pred ---------ccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcccc
Confidence 11123577999999999999999999999987654
No 218
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=362.29 Aligned_cols=322 Identities=22% Similarity=0.202 Sum_probs=205.7
Q ss_pred ceeeeeccceecCchhhhccCccceEEeecccccCccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEeccccc
Q 001274 268 LLALHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENM 347 (1109)
Q Consensus 268 ~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 347 (1109)
.++.++++++ .+|..+. ++++.|++++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|+.|+|++|.
T Consensus 15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 4555555555 3444332 345555555555555445555555555555555555555445555555555555555555
Q ss_pred ccCcccccccCCCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchh
Q 001274 348 LQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPH 427 (1109)
Q Consensus 348 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~ 427 (1109)
+.+..+..|..+++|++|+|++|+++ +..+..|..+++|++|++++|.+.+..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 147 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIV------------------------ILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCC------------------------EECTTTTTTCTTCCEEEECCTTCCEECTTS
T ss_pred CCccCcccccCCCCCCEEECCCCccc------------------------cCChhHccccccCCEEECCCCccceeChhh
Confidence 44444444444445555555555544 444444444444555555555544444444
Q ss_pred hhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCcccccccccc
Q 001274 428 LCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLE 507 (1109)
Q Consensus 428 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 507 (1109)
|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..+..|.++++|++|++++|.+.+.+|..+....+|+
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcccc
Confidence 55555555555555555544444455555555566666666655566666777777777777766666666666666888
Q ss_pred EEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccc
Q 001274 508 RLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNK 587 (1109)
Q Consensus 508 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 587 (1109)
+|+|++|++++..+..+.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|+
T Consensus 228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 88888888886555678888888888888888887777778888888888888888888778888888888888888888
Q ss_pred cccccCcccCCCcccceeeccCccccccc
Q 001274 588 LTGAIPSSLGGLARLTELQMGGNIFSGSI 616 (1109)
Q Consensus 588 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 616 (1109)
+++..+..|..+++|++|++++|++.+..
T Consensus 308 l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp CSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred CceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 88777778888888888888888887543
No 219
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=8.6e-37 Score=365.53 Aligned_cols=258 Identities=26% Similarity=0.353 Sum_probs=211.1
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCC-cchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEG-ATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.++||+|+||+||+|+.. +++.||||++...... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus 26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 105 (484)
T 3nyv_A 26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG 105 (484)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 57899999999999999999976 7899999999754332 334677999999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee---CCCCceEEeeccccccc
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL---DEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll---~~~~~~kl~DFG~a~~~ 956 (1109)
||+++|+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||++ +.++.+||+|||+++..
T Consensus 106 e~~~~~~L~~~~~~~~~---~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~ 179 (484)
T 3nyv_A 106 EVYTGGELFDEIISRKR---FSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHF 179 (484)
T ss_dssp CCCCSCBHHHHHHTCSC---CBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHB
T ss_pred ecCCCCCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEc
Confidence 99999999999976553 899999999999999999999 7799999999999999 56789999999999876
Q ss_pred cCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK 1036 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1109)
.. ........||+.|+|||++.+ .++.++||||+||++|+|++|+.||.+.. ..+.................
T Consensus 180 ~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~----~~~~~~~i~~~~~~~~~~~~- 251 (484)
T 3nyv_A 180 EA--SKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGAN----EYDILKKVEKGKYTFELPQW- 251 (484)
T ss_dssp CC--CCSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCCCCCCSGGG-
T ss_pred cc--ccccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCC----HHHHHHHHHcCCCCCCCccc-
Confidence 52 233345679999999999876 69999999999999999999999998543 22333332222221110000
Q ss_pred hcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhh
Q 001274 1037 RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQ 1082 (1109)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 1082 (1109)
......+.+++.+||+.||++|||+.|++++-+....
T Consensus 252 ---------~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~~~~~~ 288 (484)
T 3nyv_A 252 ---------KKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTY 288 (484)
T ss_dssp ---------GGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHHH
T ss_pred ---------ccCCHHHHHHHHHHCCCChhHCcCHHHHhhChhhccc
Confidence 0112357799999999999999999999999876543
No 220
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=3.9e-37 Score=354.04 Aligned_cols=272 Identities=23% Similarity=0.371 Sum_probs=207.9
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|++.+.||+|+||+||+|++. +++.||+|++.... .....+.+.+|++++++++||||+++++++..++..++|||
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI-KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC-CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc-CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 57889999999999999999976 68999999997542 33445778999999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCC-CeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRP-HIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
|+++++|.+++..... +++..+..++.|++.|++||| +. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 112 ~~~~~~L~~~l~~~~~---~~~~~~~~i~~~i~~~l~~lh---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 185 (360)
T 3eqc_A 112 HMDGGSLDQVLKKAGR---IPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS 185 (360)
T ss_dssp CCTTCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHH---HhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc
Confidence 9999999999976543 899999999999999999999 53 8999999999999999999999999999765321
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccC-----------
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMV----------- 1028 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~----------- 1028 (1109)
......||+.|+|||++.+..++.++||||+||++|||++|+.||....... .............
T Consensus 186 ---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 261 (360)
T 3eqc_A 186 ---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKE-LELMFGCQVEGDAAETPPRPRTPG 261 (360)
T ss_dssp ---C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHH-HHHHHC------------------
T ss_pred ---cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHhcccccccCCCCCCCcccCC
Confidence 2234578999999999999999999999999999999999999997533111 0000000000000
Q ss_pred -----------C---Cchhhhhhcchh--hcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1029 -----------P---TSELFDKRLDLS--AKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1029 -----------~---~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
+ ..+..+...... ..........+.+++.+||+.||++|||++|++++-+......
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~ 333 (360)
T 3eqc_A 262 RPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDA 333 (360)
T ss_dssp ------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHHHHH
T ss_pred CcccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhChHhhcchH
Confidence 0 000000000000 0000011345889999999999999999999999877654443
No 221
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=3.7e-37 Score=342.93 Aligned_cols=261 Identities=23% Similarity=0.316 Sum_probs=192.0
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.+.||+|+||+||+|++. +++.||||+++.........+.+.++...++.++||||+++++++...+..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 367889999999999999999974 7899999999754333333344555566688899999999999999999999999
Q ss_pred EeccCCCHHHHhccC-CCCCCCChHHHHHHHHHHHHHHHHHhhcCCC-CeEecCCCCCceeeCCCCceEEeecccccccc
Q 001274 880 EYMENGSLGEQLHGN-KQTCLLDWDARYRIALGAAEGLCYLHYDCRP-HIIHRDIKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
||++ |+|.+++... .....+++..+..++.|++.|++||| +. +|+||||||+||+++.++.+||+|||+++...
T Consensus 86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 161 (290)
T 3fme_A 86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLV 161 (290)
T ss_dssp ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHSCCCCCCCSGGGCEECTTCCEEBCCC-------
T ss_pred ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeecCCccccc
Confidence 9997 5888777541 11123899999999999999999999 65 99999999999999999999999999998664
Q ss_pred CCCCCCccccccccceeccccc----cCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchh
Q 001274 958 LPYSKSMSAIAGSYGYIAPEYA----YTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSEL 1033 (1109)
Q Consensus 958 ~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1109)
.. .......||+.|+|||++ .+..++.++||||+|+++|||++|+.||.... .....+........+...
T Consensus 162 ~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~~~~~~~~~~~~~~~~~- 235 (290)
T 3fme_A 162 DD--VAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWG---TPFQQLKQVVEEPSPQLP- 235 (290)
T ss_dssp ----------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCS---CHHHHHHHHHHSCCCCCC-
T ss_pred cc--ccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccC---chHHHHHHHhccCCCCcc-
Confidence 22 222344789999999996 56678999999999999999999999997532 222222222222211110
Q ss_pred hhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhh
Q 001274 1034 FDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQ 1082 (1109)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 1082 (1109)
. ......+.+++.+||+.||++|||++|++++-+....
T Consensus 236 -~----------~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~hp~f~~~ 273 (290)
T 3fme_A 236 -A----------DKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLH 273 (290)
T ss_dssp -T----------TTSCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHH
T ss_pred -c----------ccCCHHHHHHHHHHhhcChhhCcCHHHHHhCcccccC
Confidence 0 0112357899999999999999999999998766543
No 222
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=338.35 Aligned_cols=256 Identities=24% Similarity=0.339 Sum_probs=201.1
Q ss_pred CCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEEe
Q 001274 803 NFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEY 881 (1109)
Q Consensus 803 ~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 881 (1109)
+|.....||+|+||+||+|++. +++.||||++.... ....+.+.+|+.+++.++||||+++++++...+..++||||
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 100 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERD--SRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQ 100 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCC--C---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCc--hHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEe
Confidence 4555679999999999999964 68899999997543 23456789999999999999999999999999999999999
Q ss_pred ccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC-CCceEEeeccccccccCCC
Q 001274 882 MENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE-EFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 882 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~-~~~~kl~DFG~a~~~~~~~ 960 (1109)
+++++|.+++........+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||.++.....
T Consensus 101 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~- 176 (295)
T 2clq_A 101 VPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGI- 176 (295)
T ss_dssp CSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC--
T ss_pred CCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCCC-
Confidence 999999999987654444778899999999999999999 779999999999999987 899999999999866422
Q ss_pred CCCccccccccceeccccccCCC--CCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 961 SKSMSAIAGSYGYIAPEYAYTMK--VTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
........|++.|+|||++.+.. ++.++||||||+++|||++|+.||...... .............+. +
T Consensus 177 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~~~---~---- 247 (295)
T 2clq_A 177 NPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEP--QAAMFKVGMFKVHPE---I---- 247 (295)
T ss_dssp ----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSH--HHHHHHHHHHCCCCC---C----
T ss_pred CCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCch--hHHHHhhcccccccc---c----
Confidence 22234557899999999987654 889999999999999999999999753311 111111111111000 0
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
.......+.+++.+||+.||++||++.|++++-+.
T Consensus 248 ------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~~~~ 282 (295)
T 2clq_A 248 ------PESMSAEAKAFILKCFEPDPDKRACANDLLVDEFL 282 (295)
T ss_dssp ------CTTSCHHHHHHHHHTTCSSTTTSCCHHHHHTSGGG
T ss_pred ------cccCCHHHHHHHHHHccCChhhCCCHHHHhcChhh
Confidence 11112357789999999999999999999987544
No 223
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=6e-37 Score=346.72 Aligned_cols=254 Identities=27% Similarity=0.362 Sum_probs=200.3
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC------CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE------GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD 873 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 873 (1109)
.++|++.+.||+|+||.||+|++. +++.||||++..... .......+.+|++++++++||||+++++++...+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 88 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 88 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence 467999999999999999999875 589999999864321 1122346889999999999999999999987654
Q ss_pred ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCc---eEEeec
Q 001274 874 SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQ---AHVGDF 950 (1109)
Q Consensus 874 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~---~kl~DF 950 (1109)
.++||||+++++|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++. +||+||
T Consensus 89 -~~lv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Df 161 (322)
T 2ycf_A 89 -YYIVLELMEGGELFDKVVGNKR---LKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDF 161 (322)
T ss_dssp -EEEEEECCTTEETHHHHSTTCC---CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEECCC
T ss_pred -eEEEEecCCCCcHHHHHhccCC---CCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEEccC
Confidence 8999999999999999976543 899999999999999999999 779999999999999987654 999999
Q ss_pred cccccccCCCCCCccccccccceecccccc---CCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhcc
Q 001274 951 GLAKLIDLPYSKSMSAIAGSYGYIAPEYAY---TMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEM 1027 (1109)
Q Consensus 951 G~a~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~ 1027 (1109)
|+++.... ........||+.|+|||++. +..++.++||||+||++|||++|+.||............+.......
T Consensus 162 g~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~ 239 (322)
T 2ycf_A 162 GHSKILGE--TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNF 239 (322)
T ss_dssp TTCEECCC--CHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHTCCCC
T ss_pred ccceeccc--ccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhCcccc
Confidence 99987642 11223456899999999874 56789999999999999999999999986654445544443321111
Q ss_pred CCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 001274 1028 VPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAM 1076 (1109)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~ 1076 (1109)
. .+. . ......+.+++.+||+.||++||+++|++++
T Consensus 240 ~--~~~-~----------~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h 275 (322)
T 2ycf_A 240 I--PEV-W----------AEVSEKALDLVKKLLVVDPKARFTTEEALRH 275 (322)
T ss_dssp C--HHH-H----------TTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred C--chh-h----------hhcCHHHHHHHHHHcccCHhhCCCHHHHhhC
Confidence 0 000 0 0112457899999999999999999999864
No 224
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=1.3e-36 Score=340.95 Aligned_cols=254 Identities=27% Similarity=0.374 Sum_probs=208.9
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
+.|+..+.||+|+||+||+|++. +++.||||++..... ....+.+.+|+.++++++||||+++++++...+..++|||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA-EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTC-STTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEeccccc-HHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 56888999999999999999864 689999999975432 3346789999999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
|+++++|.+++... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||.+......
T Consensus 101 ~~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~- 172 (303)
T 3a7i_A 101 YLGGGSALDLLEPG----PLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT- 172 (303)
T ss_dssp CCTTEEHHHHHTTS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTT-
T ss_pred eCCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCcc-
Confidence 99999999999753 3899999999999999999999 779999999999999999999999999999876532
Q ss_pred CCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcch
Q 001274 961 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDL 1040 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1109)
........||+.|+|||++.+..++.++||||||+++|||++|+.||..... ............+. ..
T Consensus 173 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~~~~~~---~~----- 240 (303)
T 3a7i_A 173 QIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHP----MKVLFLIPKNNPPT---LE----- 240 (303)
T ss_dssp BCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHHHHHSCCCC---CC-----
T ss_pred ccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCH----HHHHHHhhcCCCCC---Cc-----
Confidence 2223456789999999999999999999999999999999999999975331 11111111111100 00
Q ss_pred hhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1041 SAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1041 ~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
......+.+++.+||+.||++|||+.|++++.+...
T Consensus 241 -----~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~ 276 (303)
T 3a7i_A 241 -----GNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILR 276 (303)
T ss_dssp -----SSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCHHHHH
T ss_pred -----cccCHHHHHHHHHHcCCChhhCcCHHHHhhChhhhc
Confidence 011235779999999999999999999999876654
No 225
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=1e-36 Score=336.84 Aligned_cols=253 Identities=24% Similarity=0.367 Sum_probs=199.0
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.+.||+|+||.||+|++. +++.||||++..... .....+.+.+|+++++.++||||+++++++...+..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM 90 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence 67899999999999999999976 799999999964321 1223457889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++++|.+++..... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.+......
T Consensus 91 e~~~~~~L~~~l~~~~~---~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~ 164 (276)
T 2h6d_A 91 EYVSGGELFDYICKHGR---VEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 164 (276)
T ss_dssp ECCCSCBHHHHHHHHCS---CCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-
T ss_pred eccCCCcHHHHHhccCC---CCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCEEEeecccccccCCC
Confidence 99999999999976543 899999999999999999999 679999999999999999999999999999876422
Q ss_pred CCCCccccccccceeccccccCCCC-CccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRL 1038 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1109)
.......+++.|+|||++.+..+ +.++||||+|+++|+|++|+.||.... .................
T Consensus 165 --~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~----~~~~~~~~~~~~~~~~~------ 232 (276)
T 2h6d_A 165 --EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH----VPTLFKKIRGGVFYIPE------ 232 (276)
T ss_dssp --------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCCCCCCT------
T ss_pred --cceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCc----HHHHHHHhhcCcccCch------
Confidence 22234578999999999988776 689999999999999999999997532 22222222111111111
Q ss_pred chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1039 DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
.....+.+++.+||+.||++|||+.|++++-+..
T Consensus 233 --------~~~~~l~~li~~~l~~~p~~Rps~~~~l~h~~~~ 266 (276)
T 2h6d_A 233 --------YLNRSVATLLMHMLQVDPLKRATIKDIREHEWFK 266 (276)
T ss_dssp --------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHH
T ss_pred --------hcCHHHHHHHHHHccCChhhCCCHHHHHhChhhc
Confidence 0123577899999999999999999999986643
No 226
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=1.2e-37 Score=344.80 Aligned_cols=258 Identities=22% Similarity=0.360 Sum_probs=205.1
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEe--CCceEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYH--QDSNLLL 878 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~lv 878 (1109)
++|++.+.||+|+||+||+|+.. +++.||+|++..........+.+.+|++++++++||||+++++++.. ....++|
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv 85 (279)
T 2w5a_A 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV 85 (279)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEE
T ss_pred hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEE
Confidence 57889999999999999999975 68999999998665555566789999999999999999999998854 5678999
Q ss_pred EEeccCCCHHHHhccCCC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCC-----eEecCCCCCceeeCCCCceEEeeccc
Q 001274 879 YEYMENGSLGEQLHGNKQ-TCLLDWDARYRIALGAAEGLCYLHYDCRPH-----IIHRDIKSNNILLDEEFQAHVGDFGL 952 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~-----ivH~Dlkp~NIll~~~~~~kl~DFG~ 952 (1109)
|||+++++|.+++..... ...+++..+..++.|++.||+||| +.+ |+||||||+||+++.++.+||+|||.
T Consensus 86 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~ 162 (279)
T 2w5a_A 86 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECH---RRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGL 162 (279)
T ss_dssp EECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHC------CCCCCSGGGEEECSSSCEEECCCCH
T ss_pred EeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHh---cccCCCCeeEEeccchhhEEEcCCCCEEEecCch
Confidence 999999999999975321 223899999999999999999999 556 99999999999999999999999999
Q ss_pred cccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCch
Q 001274 953 AKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSE 1032 (1109)
Q Consensus 953 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1109)
++..... ........|++.|+|||++.+..++.++||||+|+++|||++|+.||.... ..+..........+.
T Consensus 163 ~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----~~~~~~~i~~~~~~~-- 235 (279)
T 2w5a_A 163 ARILNHD-TSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS----QKELAGKIREGKFRR-- 235 (279)
T ss_dssp HHHC----CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHTCCCC--
T ss_pred heeeccc-cccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccC----HHHHHHHHhhccccc--
Confidence 9865422 111234568999999999999999999999999999999999999998543 122222211111110
Q ss_pred hhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1033 LFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
. .......+.+++.+||+.||++||++.|++++++..
T Consensus 236 -~----------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~ 272 (279)
T 2w5a_A 236 -I----------PYRYSDELNEIITRMLNLKDYHRPSVEEILENPLIL 272 (279)
T ss_dssp -C----------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCC
T ss_pred -C----------CcccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhh
Confidence 0 001123577999999999999999999999877543
No 227
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=5e-37 Score=340.75 Aligned_cols=251 Identities=23% Similarity=0.374 Sum_probs=204.0
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEe--------
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYH-------- 871 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-------- 871 (1109)
.++|++.+.||+|+||.||+|++. +++.||+|+++.. .+.+.+|++++++++||||+++++++..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~ 83 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN------NEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETS 83 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECC------SGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC----
T ss_pred ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccc------cHHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccc
Confidence 467899999999999999999976 7999999999743 2457799999999999999999998864
Q ss_pred --------CCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCC
Q 001274 872 --------QDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEF 943 (1109)
Q Consensus 872 --------~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~ 943 (1109)
....++||||+++|+|.+++..... ..+++..+..++.||+.||.||| +.+|+||||||+||+++.++
T Consensus 84 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~ 159 (284)
T 2a19_B 84 SKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRG-EKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTK 159 (284)
T ss_dssp -----CCEEEEEEEEECCCCSCBHHHHHHHGGG-SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETT
T ss_pred cccccccCcceEEEEEeccCCCCHHHHHhhccC-CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEEcCCC
Confidence 3447899999999999999975432 23899999999999999999999 77999999999999999999
Q ss_pred ceEEeeccccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHh
Q 001274 944 QAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRS 1023 (1109)
Q Consensus 944 ~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~ 1023 (1109)
.+||+|||+++..... .......+|+.|+|||++.+..++.++||||+|+++|||++|..||... .......
T Consensus 160 ~~kl~Dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~------~~~~~~~ 231 (284)
T 2a19_B 160 QVKIGDFGLVTSLKND--GKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET------SKFFTDL 231 (284)
T ss_dssp EEEECCCTTCEESSCC--SCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH------HHHHHHH
T ss_pred CEEECcchhheecccc--ccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH------HHHHHHh
Confidence 9999999999876532 2234457899999999999999999999999999999999999987531 1111111
Q ss_pred hhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccC
Q 001274 1024 IHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVS 1085 (1109)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~ 1085 (1109)
..... ... ....+.+++.+||+.||++|||+.|++++++.......
T Consensus 232 ~~~~~--~~~--------------~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~ 277 (284)
T 2a19_B 232 RDGII--SDI--------------FDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPE 277 (284)
T ss_dssp HTTCC--CTT--------------SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC---
T ss_pred hcccc--ccc--------------CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCC
Confidence 11111 000 11346789999999999999999999999998876543
No 228
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=7.6e-37 Score=374.79 Aligned_cols=252 Identities=23% Similarity=0.342 Sum_probs=200.9
Q ss_pred ceEecCCcceEEEEEec---CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEEeccC
Q 001274 808 AVIGRGACGTVYKATLA---NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEYMEN 884 (1109)
Q Consensus 808 ~~lG~G~fg~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 884 (1109)
++||+|+||+||+|.+. .++.||||+++.........+++.+|++++++++|||||++++++. .+..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-~~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCCEEEEEEccCC
Confidence 47999999999999653 4678999999865544455678999999999999999999999986 4568899999999
Q ss_pred CCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCCC--C
Q 001274 885 GSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPYS--K 962 (1109)
Q Consensus 885 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~--~ 962 (1109)
|+|.+++..... +++..+..++.||+.||+||| +.+||||||||+||+++.++.+||+|||+++....... .
T Consensus 454 g~L~~~l~~~~~---l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~ 527 (635)
T 4fl3_A 454 GPLNKYLQQNRH---VKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK 527 (635)
T ss_dssp EEHHHHHHHCTT---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC------
T ss_pred CCHHHHHhhCCC---CCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccc
Confidence 999999976543 899999999999999999999 77999999999999999999999999999987643221 2
Q ss_pred CccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcchh
Q 001274 963 SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDLS 1041 (1109)
Q Consensus 963 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1109)
......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+... .+............
T Consensus 528 ~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~----~~~~~~i~~~~~~~----------- 592 (635)
T 4fl3_A 528 AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG----SEVTAMLEKGERMG----------- 592 (635)
T ss_dssp -------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH----HHHHHHHHTTCCCC-----------
T ss_pred cccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH----HHHHHHHHcCCCCC-----------
Confidence 2233457889999999999999999999999999999998 9999986432 12222111111100
Q ss_pred hcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1042 AKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1042 ~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
........+.+++.+||+.||++||++++|++.|+.....
T Consensus 593 --~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~ 632 (635)
T 4fl3_A 593 --CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD 632 (635)
T ss_dssp --CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred --CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence 0111224678999999999999999999999999987654
No 229
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=1e-36 Score=358.68 Aligned_cols=273 Identities=22% Similarity=0.265 Sum_probs=202.3
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeC-----Cce
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQ-----DSN 875 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~ 875 (1109)
++|++.+.||+|+||+||+|++. +++.||||++..........+.+.+|++++++++||||+++++++... +..
T Consensus 26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 105 (432)
T 3n9x_A 26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDEL 105 (432)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeE
Confidence 68999999999999999999865 688999999975545555567899999999999999999999999776 568
Q ss_pred EEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccc
Q 001274 876 LLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~ 955 (1109)
|+||||++ |+|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+|+.
T Consensus 106 ~lv~e~~~-~~L~~~~~~~~~---l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGla~~ 178 (432)
T 3n9x_A 106 YIVLEIAD-SDLKKLFKTPIF---LTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLART 178 (432)
T ss_dssp EEEEECCS-EEHHHHHHSSCC---CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEecCC-cCHHHHHhccCC---CCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCCccc
Confidence 99999996 699999976543 899999999999999999999 77999999999999999999999999999987
Q ss_pred ccCCCC---------------------CCccccccccceeccccc-cCCCCCccchhHHHHHHHHHHHhCCCCCCCccc-
Q 001274 956 IDLPYS---------------------KSMSAIAGSYGYIAPEYA-YTMKVTEKCDIYSFGVVLLELITGKSPVQSLEL- 1012 (1109)
Q Consensus 956 ~~~~~~---------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~- 1012 (1109)
...... ......+||+.|+|||++ .+..++.++||||+||++|||++|..||.....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~ 258 (432)
T 3n9x_A 179 INSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTN 258 (432)
T ss_dssp C-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGG
T ss_pred ccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccccccccc
Confidence 643221 123567899999999986 566799999999999999999986555432210
Q ss_pred ------CCc-----------------HHHHHHHhhhccC-CCchhhhhhc-----------chhh-----cccHHHHHHH
Q 001274 1013 ------GGD-----------------LVTWVRRSIHEMV-PTSELFDKRL-----------DLSA-----KRTVEEMTLF 1052 (1109)
Q Consensus 1013 ------~~~-----------------~~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~-----~~~~~~~~~~ 1052 (1109)
+.. ..+.+........ +..+.+.... .... .........+
T Consensus 259 ~~p~f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 338 (432)
T 3n9x_A 259 RFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDG 338 (432)
T ss_dssp CCCSCCCSCSCC----------CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHH
T ss_pred ccccCCCccccccCcccccccccccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHH
Confidence 000 1111111111111 1111100000 0000 0001123467
Q ss_pred HHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1053 LKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1053 ~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
.+++.+||+.||++|||++|++++-+...
T Consensus 339 ~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~ 367 (432)
T 3n9x_A 339 INLLESMLKFNPNKRITIDQALDHPYLKD 367 (432)
T ss_dssp HHHHHHHSCSSTTTSCCHHHHHTCGGGTT
T ss_pred HHHHHHHhcCCcccCCCHHHHhcChhhhh
Confidence 89999999999999999999999866543
No 230
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=5.5e-37 Score=347.83 Aligned_cols=262 Identities=26% Similarity=0.313 Sum_probs=206.3
Q ss_pred cCCCCCceEecCCcceEEEEEe------cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCce
Q 001274 802 GNFSEGAVIGRGACGTVYKATL------ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSN 875 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 875 (1109)
++|++.+.||+|+||+||+|++ .+++.||||++... ........+.+|+.++++++||||+++++++...+..
T Consensus 30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV-CSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSS-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccc-cchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 6899999999999999999984 25778999999633 2334556789999999999999999999999999999
Q ss_pred EEEEEeccCCCHHHHhccCCCC----CCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC---CCceEEe
Q 001274 876 LLLYEYMENGSLGEQLHGNKQT----CLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE---EFQAHVG 948 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~~~----~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kl~ 948 (1109)
++||||+++|+|.+++...... ..+++..+..++.||+.||.||| +.+|+||||||+||+++. +..+||+
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~kl~ 185 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIG 185 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEEEC
Confidence 9999999999999999865421 34889999999999999999999 779999999999999984 4569999
Q ss_pred eccccccccCCCC-CCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhc
Q 001274 949 DFGLAKLIDLPYS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHE 1026 (1109)
Q Consensus 949 DFG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~ 1026 (1109)
|||+++....... .......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||.... ..+........
T Consensus 186 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~----~~~~~~~~~~~ 261 (327)
T 2yfx_A 186 DFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS----NQEVLEFVTSG 261 (327)
T ss_dssp CCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC----HHHHHHHHHTT
T ss_pred ccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcC----HHHHHHHHhcC
Confidence 9999986542221 22234567899999999999999999999999999999998 999997532 22222222111
Q ss_pred cCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1027 MVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
..+.. .......+.+++.+||+.||++||++.+++++++.+....
T Consensus 262 ~~~~~-------------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~ 306 (327)
T 2yfx_A 262 GRMDP-------------PKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP 306 (327)
T ss_dssp CCCCC-------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred CCCCC-------------CCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCH
Confidence 11000 0111235779999999999999999999999999887654
No 231
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=6.3e-37 Score=345.82 Aligned_cols=261 Identities=22% Similarity=0.332 Sum_probs=203.2
Q ss_pred cCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEe----CCceE
Q 001274 802 GNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYH----QDSNL 876 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~ 876 (1109)
++|++.+.||+|+||.||+|+. .+++.||||++... .....+.+.+|+++++.++||||+++++++.. ....+
T Consensus 29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 106 (317)
T 2buj_A 29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH--EQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAW 106 (317)
T ss_dssp EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES--SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEE
T ss_pred eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC--CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeE
Confidence 6789999999999999999997 47999999998643 23456778999999999999999999999873 34678
Q ss_pred EEEEeccCCCHHHHhccCC-CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecccccc
Q 001274 877 LLYEYMENGSLGEQLHGNK-QTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~ 955 (1109)
+||||+++|+|.+++.... ....+++..+..++.||++||+||| +.+|+||||||+||+++.++.+||+|||.+..
T Consensus 107 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~ 183 (317)
T 2buj_A 107 LLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQ 183 (317)
T ss_dssp EEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCSSCEE
T ss_pred EEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCCEEEEecCcchh
Confidence 9999999999999987521 1224899999999999999999999 77999999999999999999999999999876
Q ss_pred ccCCCCCC--------ccccccccceeccccccCCC---CCccchhHHHHHHHHHHHhCCCCCCCccc-CCcHHHHHHHh
Q 001274 956 IDLPYSKS--------MSAIAGSYGYIAPEYAYTMK---VTEKCDIYSFGVVLLELITGKSPVQSLEL-GGDLVTWVRRS 1023 (1109)
Q Consensus 956 ~~~~~~~~--------~~~~~gt~~y~aPE~~~~~~---~~~~~DvwSlGvll~elltg~~pf~~~~~-~~~~~~~~~~~ 1023 (1109)
........ .....||+.|+|||++.+.. ++.++||||+|+++|||++|+.||..... .......+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~ 263 (317)
T 2buj_A 184 ACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQ 263 (317)
T ss_dssp SCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC
T ss_pred cccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhcc
Confidence 43111110 12345799999999987654 78999999999999999999999975321 22222222110
Q ss_pred hhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1024 IHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
. ..+. .......+.+++.+||+.||++|||+.+++++|+.+...
T Consensus 264 ~--~~~~--------------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~ 307 (317)
T 2buj_A 264 L--SIPQ--------------SPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPP 307 (317)
T ss_dssp ----CCC--------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCC
T ss_pred C--CCCc--------------cccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCC
Confidence 0 0010 011123578999999999999999999999999887643
No 232
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=7.6e-37 Score=347.24 Aligned_cols=262 Identities=21% Similarity=0.235 Sum_probs=200.8
Q ss_pred cCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC-CCceeeEEEEEEe--CCceEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR-HRNIVKLYGFCYH--QDSNLL 877 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--~~~~~l 877 (1109)
++|++.++||+|+||+||+|++ .+++.||||+++. ...+.+.+|++++++++ ||||+++++++.. ....++
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~-----~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~l 110 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP-----VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPAL 110 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS-----CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc-----cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEE
Confidence 6799999999999999999986 4789999999862 23567899999999997 9999999999988 567899
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCC-ceEEeeccccccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEF-QAHVGDFGLAKLI 956 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~-~~kl~DFG~a~~~ 956 (1109)
||||+++++|.+++.. +++..+..++.||+.||+||| +.+|+||||||+||+++.++ .+||+|||+++..
T Consensus 111 v~e~~~~~~l~~~~~~------~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~ 181 (330)
T 3nsz_A 111 VFEHVNNTDFKQLYQT------LTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFY 181 (330)
T ss_dssp EEECCCCCCHHHHGGG------CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred EEeccCchhHHHHHHh------CCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEc
Confidence 9999999999999853 788999999999999999999 77999999999999999777 8999999999866
Q ss_pred cCCCCCCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhh----------
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIH---------- 1025 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~---------- 1025 (1109)
... .......++..|+|||++.+ ..++.++||||+||++|||++|+.||............+.....
T Consensus 182 ~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 259 (330)
T 3nsz_A 182 HPG--QEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDK 259 (330)
T ss_dssp CTT--CCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCC--CccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHH
Confidence 522 23345578999999999887 67899999999999999999999999643211111111110000
Q ss_pred ccCCCchhhhhhcch----------hhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1026 EMVPTSELFDKRLDL----------SAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1026 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
........+...... ...........+.+++.+||+.||++|||++|++++-+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~hp~f 323 (330)
T 3nsz_A 260 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 323 (330)
T ss_dssp TTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTSGGG
T ss_pred hccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcCccH
Confidence 000000000000000 000011123468899999999999999999999987543
No 233
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=1.2e-36 Score=357.22 Aligned_cols=264 Identities=23% Similarity=0.271 Sum_probs=204.1
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccC------CCCceeeEEEEEEeCCc
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKI------RHRNIVKLYGFCYHQDS 874 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~~~ 874 (1109)
.+|++.++||+|+||+||+|++. +++.||||+++. .......+.+|+++++.+ .|+||+++++++...+.
T Consensus 97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~---~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 173 (429)
T 3kvw_A 97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRN---EKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNH 173 (429)
T ss_dssp TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECS---CHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTE
T ss_pred CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECC---ccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCe
Confidence 57999999999999999999865 589999999963 223345677788877766 57799999999999999
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCc--eEEeeccc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQ--AHVGDFGL 952 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~--~kl~DFG~ 952 (1109)
.++||||+. ++|.+++...... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++. +||+|||+
T Consensus 174 ~~lv~e~~~-~~L~~~l~~~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~ 248 (429)
T 3kvw_A 174 ICMTFELLS-MNLYELIKKNKFQ-GFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIKVIDFGS 248 (429)
T ss_dssp EEEEECCCC-CBHHHHHHHTTTC-CCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGGEEESSTTSCCEEECCCTT
T ss_pred EEEEEeccC-CCHHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEccCCCcceEEeeccc
Confidence 999999995 6999998775432 3899999999999999999999 669999999999999999987 99999999
Q ss_pred cccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCch
Q 001274 953 AKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSE 1032 (1109)
Q Consensus 953 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1109)
++... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.+....+.+...+.. . ..+..+
T Consensus 249 a~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~-~--~~p~~~ 321 (429)
T 3kvw_A 249 SCYEH----QRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIEL-L--GMPSQK 321 (429)
T ss_dssp CEETT----CCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHH-H--CCCCHH
T ss_pred ceecC----CcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH-c--CCCCHH
Confidence 97643 2234567899999999999999999999999999999999999999864322222222211 0 011111
Q ss_pred hhhhhcc--------------------------------------hhhccc------HHHHHHHHHHHHhccCCCCCCCC
Q 001274 1033 LFDKRLD--------------------------------------LSAKRT------VEEMTLFLKIALFCSSTSPLNRP 1068 (1109)
Q Consensus 1033 ~~~~~~~--------------------------------------~~~~~~------~~~~~~~~~li~~cl~~dP~~RP 1068 (1109)
+.+.... ...... ......+.+++.+||++||++||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rp 401 (429)
T 3kvw_A 322 LLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRM 401 (429)
T ss_dssp HHHTBTTHHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSC
T ss_pred HHHhhhhhhhccCCCCCcccccccccccccccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCC
Confidence 1110000 000000 01134588999999999999999
Q ss_pred CHHHHHHHHHHh
Q 001274 1069 TMREVIAMMIDA 1080 (1109)
Q Consensus 1069 t~~evl~~L~~~ 1080 (1109)
|++|++++-+..
T Consensus 402 ta~e~L~Hpw~~ 413 (429)
T 3kvw_A 402 TPGQALRHPWLR 413 (429)
T ss_dssp CHHHHHTSTTTC
T ss_pred CHHHHhCChhhc
Confidence 999999986644
No 234
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=7.2e-37 Score=340.19 Aligned_cols=250 Identities=22% Similarity=0.350 Sum_probs=202.2
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 878 (1109)
.++|++.+.||+|+||+||+|++. +++.||||+++...........+.+|+..+..+ +||||+++++++...+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv 89 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ 89 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence 467999999999999999999976 799999999986655555677889999999999 999999999999999999999
Q ss_pred EEeccCCCHHHHhccCCC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCC---------------
Q 001274 879 YEYMENGSLGEQLHGNKQ-TCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEE--------------- 942 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~--------------- 942 (1109)
|||+++++|.+++..... ...+++..+..++.||+.||+||| +.+|+||||||+||+++.+
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~ 166 (289)
T 1x8b_A 90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDW 166 (289)
T ss_dssp EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC-----------------
T ss_pred EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCcccccccccccc
Confidence 999999999999976421 123899999999999999999999 7799999999999999844
Q ss_pred ----CceEEeeccccccccCCCCCCccccccccceeccccccCC-CCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHH
Q 001274 943 ----FQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLV 1017 (1109)
Q Consensus 943 ----~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~ 1017 (1109)
..+||+|||.+...... ....||+.|+|||++.+. .++.++||||+||++|||++|..++... ...
T Consensus 167 ~~~~~~~kl~Dfg~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~----~~~ 237 (289)
T 1x8b_A 167 ASNKVMFKIGDLGHVTRISSP-----QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG----DQW 237 (289)
T ss_dssp ---CCCEEECCCTTCEETTCS-----CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS----HHH
T ss_pred cCCceEEEEcccccccccCCc-----cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch----hHH
Confidence 47999999999876532 224589999999999876 5678999999999999999999876532 111
Q ss_pred HHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1018 TWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
..+. ....+. +. ......+.+++.+||+.||++|||+.|++++-+
T Consensus 238 ~~~~---~~~~~~---~~----------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~ 282 (289)
T 1x8b_A 238 HEIR---QGRLPR---IP----------QVLSQEFTELLKVMIHPDPERRPSAMALVKHSV 282 (289)
T ss_dssp HHHH---TTCCCC---CS----------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHTCTT
T ss_pred HHHH---cCCCCC---CC----------cccCHHHHHHHHHHhCCCcccCCCHHHHhhChH
Confidence 1111 111110 00 011235779999999999999999999998754
No 235
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=4e-37 Score=353.45 Aligned_cols=263 Identities=24% Similarity=0.315 Sum_probs=188.7
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeC------Cc
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQ------DS 874 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~ 874 (1109)
++|++.+.||+|+||.||+|++. +|+.||||++..........+.+.+|+++++.++||||+++++++... ..
T Consensus 29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~ 108 (367)
T 2fst_X 29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFND 108 (367)
T ss_dssp TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCe
Confidence 68999999999999999999864 689999999975544445567888999999999999999999998764 45
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
.++|+||+ +++|.+++... .+++..+..++.||++||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 109 ~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG~a~ 180 (367)
T 2fst_X 109 VYLVTHLM-GADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 180 (367)
T ss_dssp CEEEEECC-CEECC-----C----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC-----
T ss_pred EEEEeccc-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeeccccc
Confidence 79999999 78999888653 3899999999999999999999 7799999999999999999999999999998
Q ss_pred cccCCCCCCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccC-CCch
Q 001274 955 LIDLPYSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMV-PTSE 1032 (1109)
Q Consensus 955 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~-~~~~ 1032 (1109)
.... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+... .+.+........ +..+
T Consensus 181 ~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~----~~~l~~i~~~~g~p~~~ 252 (367)
T 2fst_X 181 HTAD----EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH----IDQLKLILRLVGTPGAE 252 (367)
T ss_dssp --------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSH----HHHHHHHHHHHCSCCHH
T ss_pred cccc----cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHHHhCCCCHH
Confidence 6542 2345678999999999887 6789999999999999999999999986432 222222211111 1111
Q ss_pred hhhhhcch-----------hhcc-----cHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1033 LFDKRLDL-----------SAKR-----TVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1033 ~~~~~~~~-----------~~~~-----~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
.+...... .... .......+.+++.+||+.||++|||++|++++-+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp~~~ 316 (367)
T 2fst_X 253 LLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 316 (367)
T ss_dssp HHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGT
T ss_pred HHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcChhhh
Confidence 11100000 0000 011124578999999999999999999999986654
No 236
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.8e-37 Score=347.75 Aligned_cols=265 Identities=24% Similarity=0.299 Sum_probs=191.6
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC-CCceeeEEEEEEe--------
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR-HRNIVKLYGFCYH-------- 871 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~-------- 871 (1109)
.+|++.++||+|+||+||+|++. +++.||||++... .....+.+.+|+.+++++. ||||+++++++..
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~ 105 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN--EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG 105 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES--SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC--chHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence 57889999999999999999965 6899999998643 2344567899999999996 9999999999953
Q ss_pred CCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCC--eEecCCCCCceeeCCCCceEEee
Q 001274 872 QDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPH--IIHRDIKSNNILLDEEFQAHVGD 949 (1109)
Q Consensus 872 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~NIll~~~~~~kl~D 949 (1109)
....++||||+. |+|.+++........+++..+..++.||+.||+||| +.+ |+||||||+||+++.++.+||+|
T Consensus 106 ~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~~~ivH~Dikp~NIl~~~~~~~kl~D 181 (337)
T 3ll6_A 106 QAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH---RQKPPIIHRDLKVENLLLSNQGTIKLCD 181 (337)
T ss_dssp SEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCCCCCGGGCEECTTSCEEBCC
T ss_pred CceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCEEEccCCcccEEECCCCCEEEec
Confidence 334689999995 799998875333334999999999999999999999 667 99999999999999999999999
Q ss_pred ccccccccCCCCCC-----------ccccccccceeccccc---cCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCc
Q 001274 950 FGLAKLIDLPYSKS-----------MSAIAGSYGYIAPEYA---YTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGD 1015 (1109)
Q Consensus 950 FG~a~~~~~~~~~~-----------~~~~~gt~~y~aPE~~---~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~ 1015 (1109)
||+++......... .....+|+.|+|||++ .+..++.++|||||||++|||++|+.||......
T Consensus 182 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~-- 259 (337)
T 3ll6_A 182 FGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL-- 259 (337)
T ss_dssp CTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC--------
T ss_pred CccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH--
Confidence 99998764322111 1244689999999998 5667899999999999999999999999753211
Q ss_pred HHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCCCCCCCC
Q 001274 1016 LVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSDYPSSPT 1092 (1109)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~~~~~~ 1092 (1109)
.......... ... .....+.+++.+||+.||++|||+.|++++|+.+.......+.++.
T Consensus 260 --~~~~~~~~~~--~~~--------------~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~~~~~~~~ 318 (337)
T 3ll6_A 260 --RIVNGKYSIP--PHD--------------TQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARNVNPKSPI 318 (337)
T ss_dssp --------CCCC--TTC--------------CSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTTCCTTSCC
T ss_pred --HhhcCcccCC--ccc--------------ccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccCCCCCccH
Confidence 1111111100 000 0012366899999999999999999999999999876655444433
No 237
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=2.9e-36 Score=346.89 Aligned_cols=279 Identities=22% Similarity=0.254 Sum_probs=196.4
Q ss_pred HHHHHHhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC
Q 001274 795 HNLLEATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD 873 (1109)
Q Consensus 795 ~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 873 (1109)
.......++|++.+.||+|+||+||+|++. +++.||||++.... .....+.+|++.++.++||||+++++++...+
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~ 92 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP---RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLG 92 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT---TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEEC
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc---cccHHHHHHHHHHHhcCCCCcccHHHhhhccc
Confidence 344567789999999999999999999975 68999999986432 23345678888888899999999999997644
Q ss_pred c-------eEEEEEeccCCCHHHHhcc-CCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC-CCc
Q 001274 874 S-------NLLLYEYMENGSLGEQLHG-NKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE-EFQ 944 (1109)
Q Consensus 874 ~-------~~lv~e~~~~gsL~~~l~~-~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~-~~~ 944 (1109)
. .++||||+++ ++...+.. ......+++..+..++.|++.|+.|||.. +.+|+||||||+||+++. ++.
T Consensus 93 ~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~~~ivH~Dlkp~NIll~~~~~~ 170 (360)
T 3e3p_A 93 ERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLP-SVNVCHRDIKPHNVLVNEADGT 170 (360)
T ss_dssp SSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTST-TTCCBCSCCCGGGEEEETTTTE
T ss_pred cccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCC-CCCeecCcCCHHHEEEeCCCCc
Confidence 3 6899999986 54444332 11222488999999999999999999944 569999999999999996 899
Q ss_pred eEEeeccccccccCCCCCCccccccccceeccccccCCC-CCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHh
Q 001274 945 AHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMK-VTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRS 1023 (1109)
Q Consensus 945 ~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~ 1023 (1109)
+||+|||+++.... ........||+.|+|||++.+.. ++.++||||+||++|||++|+.||.+..........++..
T Consensus 171 ~kl~Dfg~a~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~ 248 (360)
T 3e3p_A 171 LKLCDFGSAKKLSP--SEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVL 248 (360)
T ss_dssp EEECCCTTCBCCCT--TSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHH
T ss_pred EEEeeCCCceecCC--CCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHc
Confidence 99999999987652 22334567899999999987654 8999999999999999999999998644222222222211
Q ss_pred hhccCCCchhhhhhc--------------c---hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1024 IHEMVPTSELFDKRL--------------D---LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1024 ~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
. .+..+.+.... . .-..........+.+++.+||+.||++|||+.|++++-+.....
T Consensus 249 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~ 322 (360)
T 3e3p_A 249 G---CPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELH 322 (360)
T ss_dssp C---CCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGG
T ss_pred C---CCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccC
Confidence 0 01111110000 0 00001112345688999999999999999999999987665443
No 238
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=1.2e-36 Score=338.12 Aligned_cols=259 Identities=24% Similarity=0.316 Sum_probs=208.7
Q ss_pred HHhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEE
Q 001274 799 EATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLL 877 (1109)
Q Consensus 799 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 877 (1109)
...++|++.+.||+|+||+||+|++. +++.||||++..........+.+.+|++++++++||||+++++++...+..++
T Consensus 19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 98 (287)
T 2wei_A 19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYI 98 (287)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEE
Confidence 34468999999999999999999976 68999999997655444556789999999999999999999999999999999
Q ss_pred EEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCC---CceEEeeccccc
Q 001274 878 LYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEE---FQAHVGDFGLAK 954 (1109)
Q Consensus 878 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~---~~~kl~DFG~a~ 954 (1109)
||||+++++|.+++..... +++..+..++.||+.||+||| +.+++||||||+||+++.+ +.+||+|||+++
T Consensus 99 v~e~~~~~~L~~~l~~~~~---~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~ 172 (287)
T 2wei_A 99 VGELYTGGELFDEIIKRKR---FSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLST 172 (287)
T ss_dssp EECCCCSCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGG
T ss_pred EEEccCCCCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCcce
Confidence 9999999999998876443 899999999999999999999 7799999999999999654 479999999998
Q ss_pred cccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhh
Q 001274 955 LIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELF 1034 (1109)
Q Consensus 955 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1109)
..... .......+|+.|+|||++.+ .++.++||||+|+++|+|++|+.||.... ..+................
T Consensus 173 ~~~~~--~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~----~~~~~~~~~~~~~~~~~~~ 245 (287)
T 2wei_A 173 CFQQN--TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKN----EYDILKRVETGKYAFDLPQ 245 (287)
T ss_dssp TBCCC--SSCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCCCCCCSGG
T ss_pred eecCC--CccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCC----HHHHHHHHHcCCCCCCchh
Confidence 76522 22334568999999998875 48999999999999999999999997543 2222222222221111000
Q ss_pred hhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1035 DKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
.......+.+++.+||+.||++|||+.|++++-+..
T Consensus 246 ----------~~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp~~~ 281 (287)
T 2wei_A 246 ----------WRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQ 281 (287)
T ss_dssp ----------GTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHH
T ss_pred ----------hhhcCHHHHHHHHHHcccChhhCcCHHHHhcCHHHh
Confidence 011123577999999999999999999999976544
No 239
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=348.89 Aligned_cols=254 Identities=18% Similarity=0.216 Sum_probs=204.1
Q ss_pred hcCCCCCceEecCCcceEEEEE------ecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC---CCceeeEEEEEEe
Q 001274 801 TGNFSEGAVIGRGACGTVYKAT------LANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR---HRNIVKLYGFCYH 871 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~------~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~ 871 (1109)
.++|.+.++||+|+||+||+|+ ..+++.||||+++.. ...++..|++++++++ |+||+++++++..
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-----~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~ 138 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-----NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF 138 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-----CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-----ChhHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence 4678899999999999999994 346889999999632 3456778888888876 9999999999999
Q ss_pred CCceEEEEEeccCCCHHHHhccCC--CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC--------
Q 001274 872 QDSNLLLYEYMENGSLGEQLHGNK--QTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE-------- 941 (1109)
Q Consensus 872 ~~~~~lv~e~~~~gsL~~~l~~~~--~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~-------- 941 (1109)
.+..++||||+++|+|.+++.... ....+++..+..++.||+.||+||| +.+||||||||+|||++.
T Consensus 139 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~ 215 (365)
T 3e7e_A 139 QNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDE 215 (365)
T ss_dssp SSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC---
T ss_pred CCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCcccc
Confidence 999999999999999999997421 1234999999999999999999999 789999999999999998
Q ss_pred ---CCceEEeeccccccccC-CCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHH
Q 001274 942 ---EFQAHVGDFGLAKLIDL-PYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLV 1017 (1109)
Q Consensus 942 ---~~~~kl~DFG~a~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~ 1017 (1109)
++.+||+|||+|+.... .........+||+.|+|||++.+..++.++|||||||++|||+||+.||.....+..
T Consensus 216 ~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~-- 293 (365)
T 3e7e_A 216 DDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGEC-- 293 (365)
T ss_dssp ---CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEE--
T ss_pred ccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCce--
Confidence 89999999999976532 122333556799999999999999999999999999999999999999864332100
Q ss_pred HHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCC-CCHHHHHHHHHHhhhcc
Q 001274 1018 TWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNR-PTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~R-Pt~~evl~~L~~~~~~~ 1084 (1109)
. ....+. +. .....+.+++.+|++.+|.+| |+++++.+.+++.....
T Consensus 294 -------~----~~~~~~-~~--------~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~~ 341 (365)
T 3e7e_A 294 -------K----PEGLFR-RL--------PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQH 341 (365)
T ss_dssp -------E----ECSCCT-TC--------SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHHH
T ss_pred -------e----echhcc-cc--------CcHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHh
Confidence 0 000000 00 012356689999999999998 67888888888877654
No 240
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=341.08 Aligned_cols=255 Identities=26% Similarity=0.381 Sum_probs=202.5
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.+.||+|+||.||+|++. +|+.||||++.... ..+.+.+|++++++++||||+++++++...+..++||
T Consensus 28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 103 (314)
T 3com_A 28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES----DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVM 103 (314)
T ss_dssp --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS----CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH----HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEe
Confidence 468999999999999999999876 58999999997432 3467899999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++++|.+++..... .+++..+..++.|++.||.||| +.+++||||||+||+++.++.+||+|||.+......
T Consensus 104 e~~~~~~L~~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 178 (314)
T 3com_A 104 EYCGAGSVSDIIRLRNK--TLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDT 178 (314)
T ss_dssp ECCTTEEHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTT
T ss_pred ecCCCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhh
Confidence 99999999999974332 3899999999999999999999 779999999999999999999999999999876532
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
........|++.|+|||++.+..++.++||||+|+++|+|++|+.||..... ............+. ...
T Consensus 179 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~~~~~~--~~~---- 247 (314)
T 3com_A 179 -MAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHP----MRAIFMIPTNPPPT--FRK---- 247 (314)
T ss_dssp -BSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHHHHHSCCCC--CSS----
T ss_pred -ccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCCh----HHHHHHHhcCCCcc--cCC----
Confidence 2223455789999999999999999999999999999999999999975431 11111111111100 000
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
.......+.+++.+||+.||++|||+.+++++-+..
T Consensus 248 -----~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~~~~~ 283 (314)
T 3com_A 248 -----PELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVR 283 (314)
T ss_dssp -----GGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHH
T ss_pred -----cccCCHHHHHHHHHHccCChhhCcCHHHHHhCHHHh
Confidence 001123578999999999999999999999876543
No 241
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=5e-37 Score=344.05 Aligned_cols=253 Identities=25% Similarity=0.346 Sum_probs=199.1
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|++.+.||+|+||+||+|++. +++.||+|++.... ....+.+.+|+++++.++||||+++++++...+..++|||
T Consensus 19 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 96 (302)
T 2j7t_A 19 EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKS--EEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE 96 (302)
T ss_dssp GTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred cceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCC--HHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence 68999999999999999999976 58999999986443 2345788999999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
|+++++|.+++..... .+++..+..++.||+.||.||| +.+++||||||+||+++.++.+||+|||++......
T Consensus 97 ~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~- 170 (302)
T 2j7t_A 97 FCPGGAVDAIMLELDR--GLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT- 170 (302)
T ss_dssp CCTTEEHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH-
T ss_pred eCCCCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCcccccc-
Confidence 9999999999876433 2899999999999999999999 779999999999999999999999999998643211
Q ss_pred CCCccccccccceeccccc-----cCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhh
Q 001274 961 SKSMSAIAGSYGYIAPEYA-----YTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFD 1035 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1109)
........||+.|+|||++ .+..++.++||||+|+++|||++|+.||..... ............+.. ...
T Consensus 171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~~~~~~~-~~~ 245 (302)
T 2j7t_A 171 LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP----MRVLLKIAKSDPPTL-LTP 245 (302)
T ss_dssp HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHHHHHSCCCCC-SSG
T ss_pred ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCH----HHHHHHHhccCCccc-CCc
Confidence 1112345689999999988 467789999999999999999999999975432 222222222211110 000
Q ss_pred hhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 001274 1036 KRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMM 1077 (1109)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L 1077 (1109)
......+.+++.+||+.||++|||+.+++++-
T Consensus 246 ----------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~ 277 (302)
T 2j7t_A 246 ----------SKWSVEFRDFLKIALDKNPETRPSAAQLLEHP 277 (302)
T ss_dssp ----------GGSCHHHHHHHHHHSCSCTTTSCCHHHHTTST
T ss_pred ----------cccCHHHHHHHHHHcccChhhCCCHHHHhcCh
Confidence 11123577999999999999999999998764
No 242
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=4.3e-37 Score=354.08 Aligned_cols=277 Identities=19% Similarity=0.232 Sum_probs=202.6
Q ss_pred HHHHHHHhcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcc---------hhHHHHHHHHHhccCCCCceee
Q 001274 794 YHNLLEATGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGAT---------ADNSFLAEISTLGKIRHRNIVK 864 (1109)
Q Consensus 794 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~---------~~~~~~~E~~~l~~l~h~niv~ 864 (1109)
..++....++|++.+.||+|+||.||+|++.+++.||||++........ ..+.+.+|++++++++||||++
T Consensus 14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~ 93 (362)
T 3pg1_A 14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG 93 (362)
T ss_dssp HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence 3466777899999999999999999999988899999999965433211 1267899999999999999999
Q ss_pred EEEEEEeCC-----ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee
Q 001274 865 LYGFCYHQD-----SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL 939 (1109)
Q Consensus 865 l~~~~~~~~-----~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll 939 (1109)
+++++...+ ..++||||++ |+|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+||++
T Consensus 94 ~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~ 167 (362)
T 3pg1_A 94 LRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRI--VISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNILL 167 (362)
T ss_dssp CSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTS--CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEE
T ss_pred eeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHHEEE
Confidence 999986533 5699999997 688888876543 3899999999999999999999 7799999999999999
Q ss_pred CCCCceEEeeccccccccCCCCCCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHH
Q 001274 940 DEEFQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVT 1018 (1109)
Q Consensus 940 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~ 1018 (1109)
+.++.+||+|||+++.... ........+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.........
T Consensus 168 ~~~~~~kl~Dfg~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~ 245 (362)
T 3pg1_A 168 ADNNDITICDFNLAREDTA--DANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNK 245 (362)
T ss_dssp CTTCCEEECCTTC-----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH
T ss_pred cCCCCEEEEecCccccccc--ccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 9999999999999985442 222345678999999999887 6789999999999999999999999986432211111
Q ss_pred HHHHhhhccCCCchh-----------hhhhcch-----hhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1019 WVRRSIHEMVPTSEL-----------FDKRLDL-----SAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1019 ~~~~~~~~~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
.+... . ..+.... ....... ...........+.+++.+||+.||++|||+.|++++-+..
T Consensus 246 i~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~ 321 (362)
T 3pg1_A 246 IVEVV-G-TPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRHPYFE 321 (362)
T ss_dssp HHHHH-C-CCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGT
T ss_pred HHHHc-C-CCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcCchhh
Confidence 11110 0 0000000 0000000 0000111234578999999999999999999999886543
No 243
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=5.4e-37 Score=339.35 Aligned_cols=253 Identities=27% Similarity=0.412 Sum_probs=199.0
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeC-CceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQ-DSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~~~lv~e 880 (1109)
++|++.+.||+|+||+||+|+++ ++.||||+++.. ...+.+.+|++++++++||||+++++++... +..++|||
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e 95 (278)
T 1byg_A 21 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE 95 (278)
T ss_dssp GGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC----C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEEC
T ss_pred hhceEEeEEecCCCceEEEEEEc-CCEEEEEEecch----hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEe
Confidence 57889999999999999999885 889999998632 2456789999999999999999999997654 46899999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPY 960 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 960 (1109)
|+++++|.+++..... ..+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 96 ~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~- 170 (278)
T 1byg_A 96 YMAKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST- 170 (278)
T ss_dssp CCTTEEHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC--------
T ss_pred cCCCCCHHHHHHhccc-ccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeecccccccccc-
Confidence 9999999999975432 13788999999999999999999 779999999999999999999999999999865422
Q ss_pred CCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 961 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 961 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
.....+++.|+|||++.+..++.++||||+|+++|||++ |+.||...... .....+. ....+.
T Consensus 171 ---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~-~~~~~~~---~~~~~~--------- 234 (278)
T 1byg_A 171 ---QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK-DVVPRVE---KGYKMD--------- 234 (278)
T ss_dssp --------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG-GHHHHHT---TTCCCC---------
T ss_pred ---ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHHh---cCCCCC---------
Confidence 223457889999999999999999999999999999998 99999754321 2221111 111000
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
........+.+++.+||+.||++||++.|+++.|+.+....
T Consensus 235 ----~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~~ 275 (278)
T 1byg_A 235 ----APDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHE 275 (278)
T ss_dssp ----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred ----CcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhhh
Confidence 01112245789999999999999999999999999987643
No 244
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=1.1e-36 Score=347.44 Aligned_cols=261 Identities=23% Similarity=0.334 Sum_probs=202.5
Q ss_pred hcCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCCcchhHHHHHHHHH-hccCCCCceeeEEEEEEeCCceEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEGATADNSFLAEIST-LGKIRHRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~lv 878 (1109)
.++|++.+.||+|+||+||+|++ .+|+.||||++...... .....+..|..+ ++.++||||+++++++...+..++|
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 128 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNS-QEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 128 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCC-HHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEE
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCc-HHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEE
Confidence 36788889999999999999996 47899999999754333 334455566665 7888999999999999999999999
Q ss_pred EEeccCCCHHHHhccCC-CCCCCChHHHHHHHHHHHHHHHHHhhcCCC-CeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 879 YEYMENGSLGEQLHGNK-QTCLLDWDARYRIALGAAEGLCYLHYDCRP-HIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
|||+++ +|.+++.... ....+++..+..++.||+.||+||| +. +|+||||||+||+++.++.+||+|||+++..
T Consensus 129 ~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 204 (340)
T 3an0_A 129 MELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL 204 (340)
T ss_dssp ECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCSCCSTTEEECSTTCEEECCCSHHHHH
T ss_pred HHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeeCCCceec
Confidence 999975 9988886421 1123899999999999999999999 54 9999999999999999999999999999866
Q ss_pred cCCCCCCccccccccceecccccc----CCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCch
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAY----TMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSE 1032 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1109)
... .......||+.|+|||++. +..++.++|||||||++|||++|+.||.... .....+........+..
T Consensus 205 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~---~~~~~~~~~~~~~~~~~- 278 (340)
T 3an0_A 205 VDS--VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWG---TPFQQLKQVVEEPSPQL- 278 (340)
T ss_dssp SCH--HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCS---CHHHHHHHHHHSCCCCC-
T ss_pred ccc--cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCcccc---chHHHHHHHhcCCCCCC-
Confidence 421 1123347899999999964 3478999999999999999999999997532 22222222222221110
Q ss_pred hhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1033 LFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
.. ......+.+++.+||+.||++||++.|++++-+.....
T Consensus 279 -~~----------~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp~f~~~~ 318 (340)
T 3an0_A 279 -PA----------DKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLHE 318 (340)
T ss_dssp -CG----------GGSCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHT
T ss_pred -Cc----------ccCCHHHHHHHHHHccCCcccCcCHHHHhcCcCccccc
Confidence 00 01123578999999999999999999999987665433
No 245
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=1.2e-36 Score=345.02 Aligned_cols=270 Identities=23% Similarity=0.347 Sum_probs=205.7
Q ss_pred HhcCCCCCceEecCCcceEEEEEe--cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccC---CCCceeeEEEEEE----
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATL--ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKI---RHRNIVKLYGFCY---- 870 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~---- 870 (1109)
..++|++.+.||+|+||+||+|++ .+++.||+|+++...........+.+|+.+++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 347899999999999999999997 3688999999976544333445677888877766 8999999999987
Q ss_pred -eCCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEee
Q 001274 871 -HQDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGD 949 (1109)
Q Consensus 871 -~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~D 949 (1109)
.....++||||++ |+|.+++...... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~kl~D 163 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPEP-GVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLAD 163 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCTT-CSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECS
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcccC-CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEEEec
Confidence 4556789999997 6999999765432 3899999999999999999999 77999999999999999999999999
Q ss_pred ccccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCC
Q 001274 950 FGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVP 1029 (1109)
Q Consensus 950 FG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~ 1029 (1109)
||.++.... ........+|+.|+|||++.+..++.++||||+|+++|||++|+.||.+..........+.. ... +
T Consensus 164 fg~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~-~~~--~ 238 (326)
T 1blx_A 164 FGLARIYSF--QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDV-IGL--P 238 (326)
T ss_dssp CCSCCCCCG--GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHH-HCC--C
T ss_pred CcccccccC--CCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH-cCC--C
Confidence 999986542 12234567899999999999999999999999999999999999999864322212121111 100 0
Q ss_pred Cchhhhhhc------------chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1030 TSELFDKRL------------DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1030 ~~~~~~~~~------------~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
..+.+.... .............+.+++.+||+.||++|||+.|++++-+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~ 300 (326)
T 1blx_A 239 GEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYF 300 (326)
T ss_dssp CGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGG
T ss_pred CcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcCccc
Confidence 000000000 00000111223457799999999999999999999987543
No 246
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=2e-36 Score=373.73 Aligned_cols=254 Identities=22% Similarity=0.276 Sum_probs=208.9
Q ss_pred HhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceE
Q 001274 800 ATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 800 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 876 (1109)
..++|++.++||+|+||+||+|++. +++.||||+++.... .....+.+..|..++..+ +||+|+++++++.+.+..|
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 3468999999999999999999965 688999999974311 122456788899999988 7999999999999999999
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
+||||+++|+|.+++..... +++..++.++.||+.||+||| +.+||||||||+|||++.++.+||+|||+|+..
T Consensus 419 lV~E~~~gg~L~~~l~~~~~---~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~ 492 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQVGR---FKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKEN 492 (674)
T ss_dssp EEEECCCSCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTCEEC
T ss_pred EEEeCcCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeecceeecc
Confidence 99999999999999987543 899999999999999999999 779999999999999999999999999999864
Q ss_pred cCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK 1036 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1109)
.. ........+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+. +..+..............
T Consensus 493 ~~-~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~----~~~~~~~~i~~~~~~~p~---- 563 (674)
T 3pfq_A 493 IW-DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE----DEDELFQSIMEHNVAYPK---- 563 (674)
T ss_dssp CC-TTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCS----SHHHHHHHHHSSCCCCCT----
T ss_pred cc-CCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCC----CHHHHHHHHHhCCCCCCc----
Confidence 32 223345678999999999999999999999999999999999999999853 233333333333222111
Q ss_pred hcchhhcccHHHHHHHHHHHHhccCCCCCCCCCH-----HHHHHHHH
Q 001274 1037 RLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTM-----REVIAMMI 1078 (1109)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~-----~evl~~L~ 1078 (1109)
.....+.+++.+||+.||++||++ +||+++-+
T Consensus 564 ----------~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h~f 600 (674)
T 3pfq_A 564 ----------SMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAF 600 (674)
T ss_dssp ----------TSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSSGG
T ss_pred ----------cCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcCcc
Confidence 112357799999999999999997 88887643
No 247
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=2.3e-37 Score=358.01 Aligned_cols=247 Identities=16% Similarity=0.144 Sum_probs=191.6
Q ss_pred hcCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccC-CCcchhHHHHHHH---HHhccCCCCceeeEE-------EE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRG-EGATADNSFLAEI---STLGKIRHRNIVKLY-------GF 868 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~~~E~---~~l~~l~h~niv~l~-------~~ 868 (1109)
.++|++.+.||+|+||+||+|++ .+|+.||||++.... ......+.+.+|+ +++++++||||++++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 36788899999999999999996 469999999997542 2334557889999 555666899999998 66
Q ss_pred EEeCCc-----------------eEEEEEeccCCCHHHHhccCCC----CCCCChHHHHHHHHHHHHHHHHHhhcCCCCe
Q 001274 869 CYHQDS-----------------NLLLYEYMENGSLGEQLHGNKQ----TCLLDWDARYRIALGAAEGLCYLHYDCRPHI 927 (1109)
Q Consensus 869 ~~~~~~-----------------~~lv~e~~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~i 927 (1109)
+...+. .++||||+ +|+|.+++..... ...+++..+..++.||+.||+||| +.+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCe
Confidence 665532 78999999 6899999976432 112345888899999999999999 7799
Q ss_pred EecCCCCCceeeCCCCceEEeeccccccccCCCCCCccccccccceeccccccCC-----------CCCccchhHHHHHH
Q 001274 928 IHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTM-----------KVTEKCDIYSFGVV 996 (1109)
Q Consensus 928 vH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~DvwSlGvl 996 (1109)
+||||||+|||++.++.+||+|||+++... .......| +.|+|||++.+. .++.++|||||||+
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~----~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~i 302 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDG----ARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLV 302 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETT----CEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecC----CcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHH
Confidence 999999999999999999999999998643 23344567 999999999887 89999999999999
Q ss_pred HHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 001274 997 LLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAM 1076 (1109)
Q Consensus 997 l~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~ 1076 (1109)
+|||++|+.||........ ........ ......+.+++.+||+.||++|||+.|++++
T Consensus 303 l~elltg~~Pf~~~~~~~~--------------~~~~~~~~--------~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h 360 (377)
T 3byv_A 303 IYWIWCADLPITKDAALGG--------------SEWIFRSC--------KNIPQPVRALLEGFLRYPKEDRLLPLQAMET 360 (377)
T ss_dssp HHHHHHSSCCC------CC--------------SGGGGSSC--------CCCCHHHHHHHHHHTCSSGGGCCCHHHHHTS
T ss_pred HHHHHHCCCCCcccccccc--------------hhhhhhhc--------cCCCHHHHHHHHHHcCCCchhCCCHHHHhhC
Confidence 9999999999975331111 00000000 0112357789999999999999999999986
Q ss_pred HH
Q 001274 1077 MI 1078 (1109)
Q Consensus 1077 L~ 1078 (1109)
-+
T Consensus 361 p~ 362 (377)
T 3byv_A 361 PE 362 (377)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 248
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=2.7e-36 Score=337.40 Aligned_cols=257 Identities=24% Similarity=0.362 Sum_probs=206.3
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCc-------chhHHHHHHHHHhccCC-CCceeeEEEEEEe
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGA-------TADNSFLAEISTLGKIR-HRNIVKLYGFCYH 871 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~-------~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~ 871 (1109)
.++|++.+.||+|+||.||+|++. +++.||||++....... ...+.+.+|++++++++ ||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 468999999999999999999975 68999999997543211 12356789999999995 9999999999999
Q ss_pred CCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeecc
Q 001274 872 QDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFG 951 (1109)
Q Consensus 872 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG 951 (1109)
.+..++||||+++++|.+++..... +++..+..++.||+.||+||| +.+++||||||+||+++.++.+||+|||
T Consensus 96 ~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg 169 (298)
T 1phk_A 96 NTFFFLVFDLMKKGELFDYLTEKVT---LSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFG 169 (298)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred CCeEEEEEeccCCCcHHHHHhccCC---CCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEEeccc
Confidence 9999999999999999999976433 899999999999999999999 7799999999999999999999999999
Q ss_pred ccccccCCCCCCccccccccceecccccc------CCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhh
Q 001274 952 LAKLIDLPYSKSMSAIAGSYGYIAPEYAY------TMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIH 1025 (1109)
Q Consensus 952 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~ 1025 (1109)
.+..... ........+++.|+|||++. ...++.++||||+|+++|||++|+.||.... ..........
T Consensus 170 ~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~----~~~~~~~~~~ 243 (298)
T 1phk_A 170 FSCQLDP--GEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK----QMLMLRMIMS 243 (298)
T ss_dssp TCEECCT--TCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHH
T ss_pred chhhcCC--CcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCcc----HHHHHHHHhc
Confidence 9987652 22334567899999999885 4568899999999999999999999997532 2222222222
Q ss_pred ccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1026 EMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
......... .......+.+++.+||+.||++|||+.|++++-+.
T Consensus 244 ~~~~~~~~~----------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~ 287 (298)
T 1phk_A 244 GNYQFGSPE----------WDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFF 287 (298)
T ss_dssp TCCCCCTTT----------GGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGG
T ss_pred CCcccCccc----------ccccCHHHHHHHHHHccCCcccCCCHHHHHhChHh
Confidence 211111000 01112357899999999999999999999986543
No 249
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=343.56 Aligned_cols=263 Identities=27% Similarity=0.373 Sum_probs=207.1
Q ss_pred cCCCCCceEecCCcceEEEEEe-----cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC--c
Q 001274 802 GNFSEGAVIGRGACGTVYKATL-----ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD--S 874 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~ 874 (1109)
++|++.+.||+|+||.||+|+. .+++.||||++... .....+.+.+|++++++++||||+++++++...+ .
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 118 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS--TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN 118 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC--CSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----C
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCc
Confidence 5688899999999999999983 36899999998743 2345578999999999999999999999987654 6
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
.++||||+++++|.+++...... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 119 ~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~ 193 (326)
T 2w1i_A 119 LKLIMEYLPYGSLRDYLQKHKER--IDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTK 193 (326)
T ss_dssp CEEEECCCTTCBHHHHHHHSTTS--SCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred eEEEEECCCCCCHHHHHHhcccC--CCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcchh
Confidence 79999999999999999876443 899999999999999999999 7799999999999999999999999999998
Q ss_pred cccCCCCC--CccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCccc--------CC---cHHHHHH
Q 001274 955 LIDLPYSK--SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLEL--------GG---DLVTWVR 1021 (1109)
Q Consensus 955 ~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~--------~~---~~~~~~~ 1021 (1109)
........ ......++..|+|||++.+..++.++||||+|+++|||++|..||..... .. .....+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (326)
T 2w1i_A 194 VLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 273 (326)
T ss_dssp ECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHH
T ss_pred hccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHH
Confidence 76532221 12334577889999999988899999999999999999999999864210 00 0000111
Q ss_pred HhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1022 RSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
........ ..........+.+++.+||+.||++|||+.|+++.|+.+...
T Consensus 274 ~~~~~~~~------------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~ 323 (326)
T 2w1i_A 274 ELLKNNGR------------LPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQ 323 (326)
T ss_dssp HHHHTTCC------------CCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHhhcCCC------------CCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 11111000 000112234688999999999999999999999999988764
No 250
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=7.6e-37 Score=355.12 Aligned_cols=265 Identities=24% Similarity=0.279 Sum_probs=196.5
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCc------e
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDS------N 875 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------~ 875 (1109)
.+|++.++||+|+||+||+|++..+..||+|++..... ...+|+++++.++||||+++++++...+. .
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~ 113 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFL 113 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc------hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEE
Confidence 57889999999999999999987777799999863321 22379999999999999999999965443 6
Q ss_pred EEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeC-CCCceEEeeccccc
Q 001274 876 LLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLD-EEFQAHVGDFGLAK 954 (1109)
Q Consensus 876 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~-~~~~~kl~DFG~a~ 954 (1109)
++||||++++.+............+++..+..++.||+.||+||| +.+|+||||||+||+++ .++.+||+|||+|+
T Consensus 114 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~ 190 (394)
T 4e7w_A 114 NLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAK 190 (394)
T ss_dssp EEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred EEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCCcc
Confidence 899999987544333321111224899999999999999999999 77999999999999999 79999999999998
Q ss_pred cccCCCCCCccccccccceeccccccCC-CCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchh
Q 001274 955 LIDLPYSKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSEL 1033 (1109)
Q Consensus 955 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1109)
.... ........+|+.|+|||++.+. .++.++||||+||++|||++|+.||.+....+.+...++... .+..+.
T Consensus 191 ~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g---~p~~~~ 265 (394)
T 4e7w_A 191 ILIA--GEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLG---TPSREQ 265 (394)
T ss_dssp ECCT--TCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHC---CCCHHH
T ss_pred cccC--CCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhC---CCCHHH
Confidence 7642 2233456789999999998765 589999999999999999999999986442222222222110 000000
Q ss_pred hhh--------hc------chhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1034 FDK--------RL------DLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1034 ~~~--------~~------~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
+.. .. .............+.+++.+||+.||++|||+.|+++|-+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~ 326 (394)
T 4e7w_A 266 IKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFD 326 (394)
T ss_dssp HHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGS
T ss_pred HHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhh
Confidence 000 00 000000111234688999999999999999999999986543
No 251
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.4e-36 Score=352.19 Aligned_cols=266 Identities=24% Similarity=0.249 Sum_probs=197.1
Q ss_pred HHhcCCCCCceEecCCcceEEEEEe-cCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeC-----
Q 001274 799 EATGNFSEGAVIGRGACGTVYKATL-ANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQ----- 872 (1109)
Q Consensus 799 ~~~~~~~~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~----- 872 (1109)
...++|++.+.||+|+||+||+|++ .+++.||||++.... ....+|+++++.++||||+++++++...
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~------~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~ 77 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP------RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEP 77 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT------TSCCHHHHHHTTCCCTTBCCEEEEEEEC-----
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc------chHHHHHHHHHHcCCCCccchhheeeecCcccc
Confidence 3457899999999999999999986 479999999986432 1233799999999999999999998543
Q ss_pred ---------------------------------CceEEEEEeccCCCHHHHhccCC-CCCCCChHHHHHHHHHHHHHHHH
Q 001274 873 ---------------------------------DSNLLLYEYMENGSLGEQLHGNK-QTCLLDWDARYRIALGAAEGLCY 918 (1109)
Q Consensus 873 ---------------------------------~~~~lv~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~ 918 (1109)
...++||||++ |+|.+.+.... ....+++..+..++.||++||+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~ 156 (383)
T 3eb0_A 78 KPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGF 156 (383)
T ss_dssp --------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 33789999998 58777765311 11238999999999999999999
Q ss_pred HhhcCCCCeEecCCCCCceeeC-CCCceEEeeccccccccCCCCCCccccccccceeccccccCC-CCCccchhHHHHHH
Q 001274 919 LHYDCRPHIIHRDIKSNNILLD-EEFQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSFGVV 996 (1109)
Q Consensus 919 LH~~~~~~ivH~Dlkp~NIll~-~~~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvl 996 (1109)
|| +.+|+||||||+||+++ .++.+||+|||+|+.... ........+|+.|+|||++.+. .++.++||||+||+
T Consensus 157 LH---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~i 231 (383)
T 3eb0_A 157 IH---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIP--SEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCV 231 (383)
T ss_dssp HH---TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCT--TSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHH
T ss_pred HH---HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCC--CCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHH
Confidence 99 88999999999999997 688999999999987642 2233456789999999998875 48999999999999
Q ss_pred HHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhh-----------h---cchhhcccHHHHHHHHHHHHhccCC
Q 001274 997 LLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDK-----------R---LDLSAKRTVEEMTLFLKIALFCSST 1062 (1109)
Q Consensus 997 l~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~~~li~~cl~~ 1062 (1109)
+|||++|+.||.+....+.+...++... .+..+.+.. . ..............+.+++.+||+.
T Consensus 232 l~ell~g~~pf~~~~~~~~~~~i~~~~g---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~ 308 (383)
T 3eb0_A 232 FGELILGKPLFSGETSIDQLVRIIQIMG---TPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRY 308 (383)
T ss_dssp HHHHHHSSCSSCCSSHHHHHHHHHHHHC---CCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCS
T ss_pred HHHHHhCCCCCCCCChHHHHHHHHHHhC---CCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccC
Confidence 9999999999986432222222222110 011100000 0 0000001111234578999999999
Q ss_pred CCCCCCCHHHHHHHHHH
Q 001274 1063 SPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1063 dP~~RPt~~evl~~L~~ 1079 (1109)
||++|||+.|++++-+.
T Consensus 309 dP~~R~t~~e~l~hp~f 325 (383)
T 3eb0_A 309 EPDLRINPYEAMAHPFF 325 (383)
T ss_dssp SGGGSCCHHHHHTSGGG
T ss_pred ChhhCCCHHHHhcCHHH
Confidence 99999999999987543
No 252
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=7.4e-37 Score=350.15 Aligned_cols=266 Identities=19% Similarity=0.269 Sum_probs=206.9
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcch---------------hHHHHHHHHHhccCCCCceeeEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATA---------------DNSFLAEISTLGKIRHRNIVKLY 866 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~---------------~~~~~~E~~~l~~l~h~niv~l~ 866 (1109)
++|++.+.||+|+||+||+|++ +++.||||++......... .+.+.+|++++++++||||++++
T Consensus 31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~ 109 (348)
T 2pml_X 31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE 109 (348)
T ss_dssp TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence 6899999999999999999999 8999999999754222111 17899999999999999999999
Q ss_pred EEEEeCCceEEEEEeccCCCHHHH------hccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCC-CCeEecCCCCCceee
Q 001274 867 GFCYHQDSNLLLYEYMENGSLGEQ------LHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCR-PHIIHRDIKSNNILL 939 (1109)
Q Consensus 867 ~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-~~ivH~Dlkp~NIll 939 (1109)
+++...+..++||||+++|+|.++ +.... ...+++..+..++.|++.||+||| + .+|+||||||+||++
T Consensus 110 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dl~p~Nil~ 185 (348)
T 2pml_X 110 GIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNY-TCFIPIQVIKCIIKSVLNSFSYIH---NEKNICHRDVKPSNILM 185 (348)
T ss_dssp EEEESSSEEEEEEECCTTCBSSEESSSEESSCSSS-CCCCCHHHHHHHHHHHHHHHHHHH---HTSCEECCCCCGGGEEE
T ss_pred EEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhcc-ccCCCHHHHHHHHHHHHHHHHHHh---ccCCEeecCCChHhEEE
Confidence 999999999999999999999998 55421 234899999999999999999999 5 799999999999999
Q ss_pred CCCCceEEeeccccccccCCCCCCccccccccceeccccccCC-CCCc-cchhHHHHHHHHHHHhCCCCCCCcccCCcHH
Q 001274 940 DEEFQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTM-KVTE-KCDIYSFGVVLLELITGKSPVQSLELGGDLV 1017 (1109)
Q Consensus 940 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~DvwSlGvll~elltg~~pf~~~~~~~~~~ 1017 (1109)
+.++.+||+|||.+...... ......|++.|+|||++.+. .++. ++||||+|+++|||++|+.||.........
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~- 261 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK---KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVEL- 261 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT---EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHH-
T ss_pred cCCCcEEEeccccccccccc---cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHH-
Confidence 99999999999999876422 33456789999999999887 6666 999999999999999999999864432222
Q ss_pred HHHHHhhhccCCCch----hhhhhcchh-hcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1018 TWVRRSIHEMVPTSE----LFDKRLDLS-AKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1018 ~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
............. ......... ..........+.+++.+||+.||++|||++|++++-+
T Consensus 262 --~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~hp~ 325 (348)
T 2pml_X 262 --FNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEW 325 (348)
T ss_dssp --HHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGG
T ss_pred --HHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcCcc
Confidence 2222222111110 000000000 0000122346789999999999999999999998654
No 253
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=4.5e-36 Score=346.20 Aligned_cols=262 Identities=21% Similarity=0.307 Sum_probs=202.1
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCce-----
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSN----- 875 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 875 (1109)
++|.+.+.||+|+||+||+|++. +|+.||||++..........+.+.+|+.+++.++||||+++++++...+..
T Consensus 42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 121 (371)
T 4exu_A 42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD 121 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCC
T ss_pred ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCccccee
Confidence 68889999999999999999865 689999999976544444567889999999999999999999999877655
Q ss_pred -EEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 876 -LLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 876 -~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
++||||++ ++|.+++.. .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 122 ~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~ 192 (371)
T 4exu_A 122 FYLVMPFMQ-TDLQKIMGM-----EFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLAR 192 (371)
T ss_dssp CEEEEECCC-EEHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTTCC-
T ss_pred EEEEEcccc-ccHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecCccc
Confidence 99999997 688888743 2899999999999999999999 7799999999999999999999999999998
Q ss_pred cccCCCCCCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhcc-CCCch
Q 001274 955 LIDLPYSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEM-VPTSE 1032 (1109)
Q Consensus 955 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~-~~~~~ 1032 (1109)
.... ......+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+... .+.+....... .+..+
T Consensus 193 ~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~----~~~~~~i~~~~~~~~~~ 264 (371)
T 4exu_A 193 HADA----EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY----LDQLTQILKVTGVPGTE 264 (371)
T ss_dssp -----------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSH----HHHHHHHHHHHCCCCHH
T ss_pred cccc----CcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCh----HHHHHHHHHHhCCCcHH
Confidence 6542 2345678999999999887 6799999999999999999999999985432 22222221111 11111
Q ss_pred hhhhhc-----------chh-----hcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1033 LFDKRL-----------DLS-----AKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1033 ~~~~~~-----------~~~-----~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
...... ... ..........+.+++.+|++.||++|||++|++++-+..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~ 328 (371)
T 4exu_A 265 FVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFE 328 (371)
T ss_dssp HHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGT
T ss_pred HHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcCcccc
Confidence 111000 000 000111235688999999999999999999999986654
No 254
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.7e-37 Score=348.31 Aligned_cols=257 Identities=25% Similarity=0.395 Sum_probs=198.5
Q ss_pred HHhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEe-----
Q 001274 799 EATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYH----- 871 (1109)
Q Consensus 799 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~----- 871 (1109)
...++|++.+.||+|+||+||+|++. +++.||||++.... ...+.+.+|+.+++++ +||||+++++++..
T Consensus 21 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~ 97 (326)
T 2x7f_A 21 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG---DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPG 97 (326)
T ss_dssp CCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--C
T ss_pred CCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc---ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCcc
Confidence 34578999999999999999999974 78999999997432 3456788999999998 89999999999987
Q ss_pred -CCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeec
Q 001274 872 -QDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDF 950 (1109)
Q Consensus 872 -~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DF 950 (1109)
.+..++||||+++|+|.+++..... ..+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+||
T Consensus 98 ~~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~kl~Df 173 (326)
T 2x7f_A 98 MDDQLWLVMEFCGAGSVTDLIKNTKG-NTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDF 173 (326)
T ss_dssp CCCEEEEEEECCTTEEHHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCC
T ss_pred ccceEEEEEEcCCCCcHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHEEEcCCCCEEEeeC
Confidence 4578999999999999999976532 24899999999999999999999 779999999999999999999999999
Q ss_pred cccccccCCCCCCccccccccceecccccc-----CCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhh
Q 001274 951 GLAKLIDLPYSKSMSAIAGSYGYIAPEYAY-----TMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIH 1025 (1109)
Q Consensus 951 G~a~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~ 1025 (1109)
|++...... ........||+.|+|||++. +..++.++||||+||++|||++|+.||..... .........
T Consensus 174 g~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~ 248 (326)
T 2x7f_A 174 GVSAQLDRT-VGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHP----MRALFLIPR 248 (326)
T ss_dssp TTTC--------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHHHHH
T ss_pred cCceecCcC-ccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcH----HHHHHHhhc
Confidence 999866422 12234457899999999987 56789999999999999999999999975431 111111111
Q ss_pred ccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1026 EMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
...+ .... ......+.+++.+||+.||++||++++++++-+.
T Consensus 249 ~~~~--~~~~----------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~hp~~ 290 (326)
T 2x7f_A 249 NPAP--RLKS----------KKWSKKFQSFIESCLVKNHSQRPATEQLMKHPFI 290 (326)
T ss_dssp SCCC--CCSC----------SCSCHHHHHHHHHHCCSSGGGSCCHHHHHTSHHH
T ss_pred Cccc--cCCc----------cccCHHHHHHHHHHhccChhhCCCHHHHhhChHH
Confidence 1111 0000 0112357899999999999999999999987554
No 255
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=342.62 Aligned_cols=260 Identities=22% Similarity=0.366 Sum_probs=202.7
Q ss_pred hcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
.++|++.+.||+|+||+||+|++++ .||+|+++.........+.+.+|+.++++++||||+++++++...+..++|||
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e 109 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITS 109 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECB
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEee
Confidence 4688899999999999999999863 49999997665545555678899999999999999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC-
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP- 959 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~- 959 (1109)
|+++++|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+||+++ ++.+||+|||+++.....
T Consensus 110 ~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~ 183 (319)
T 2y4i_B 110 LCKGRTLYSVVRDAKI--VLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQ 183 (319)
T ss_dssp CCCSEEHHHHTTSSCC--CCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC---CCEECCCSCCC------
T ss_pred cccCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEe-CCCEEEeecCCcccccccc
Confidence 9999999999987543 3899999999999999999999 77999999999999998 679999999998755321
Q ss_pred ---CCCCccccccccceeccccccC---------CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhcc
Q 001274 960 ---YSKSMSAIAGSYGYIAPEYAYT---------MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEM 1027 (1109)
Q Consensus 960 ---~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~ 1027 (1109)
.........|++.|+|||++.+ ..++.++||||||+++|||++|+.||.... ............
T Consensus 184 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~----~~~~~~~~~~~~ 259 (319)
T 2y4i_B 184 AGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQP----AEAIIWQMGTGM 259 (319)
T ss_dssp ----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCC----HHHHHHHHHTTC
T ss_pred ccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHhccCC
Confidence 1122234468999999999874 457899999999999999999999997533 222222222221
Q ss_pred CCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhcc
Q 001274 1028 VPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSV 1084 (1109)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 1084 (1109)
.+.. ... .....+.+++.+||+.||++|||+.+++++|+.+....
T Consensus 260 ~~~~--~~~----------~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 260 KPNL--SQI----------GMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN 304 (319)
T ss_dssp CCCC--CCS----------SCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred CCCC--CcC----------CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence 1110 000 01124778999999999999999999999998887654
No 256
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=3.6e-37 Score=343.20 Aligned_cols=260 Identities=25% Similarity=0.386 Sum_probs=197.5
Q ss_pred cCCCCCceEecCCcceEEEEEec--CCc--EEEEEEeeccCC-CcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA--NGE--VIAVKKIKLRGE-GATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~--~~~--~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 876 (1109)
++|++.+.||+|+||+||+|++. +++ .||||+++.... .....+.+.+|++++++++||||+++++++.... .+
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~ 96 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK 96 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence 57889999999999999999853 233 689999875432 2345678999999999999999999999988754 88
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
+||||+++++|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 97 ~v~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~ 171 (291)
T 1u46_A 97 MVTELAPLGSLLDRLRKHQG--HFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRAL 171 (291)
T ss_dssp EEEECCTTCBHHHHHHHHGG--GSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred eeEecccCCCHHHHHHhccC--CcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCCCEEEccccccccc
Confidence 99999999999999976533 3899999999999999999999 779999999999999999999999999999876
Q ss_pred cCCCCC--CccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchh
Q 001274 957 DLPYSK--SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSEL 1033 (1109)
Q Consensus 957 ~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1109)
...... ......+|..|+|||++.+..++.++||||+|+++|||++ |+.||.... ..+.............
T Consensus 172 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~----~~~~~~~~~~~~~~~~-- 245 (291)
T 1u46_A 172 PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLN----GSQILHKIDKEGERLP-- 245 (291)
T ss_dssp CC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCC----HHHHHHHHHTSCCCCC--
T ss_pred cccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCC----HHHHHHHHHccCCCCC--
Confidence 432211 1233457889999999998889999999999999999999 999997543 2223332222211110
Q ss_pred hhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1034 FDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
........+.+++.+||+.||++|||+.+++++|.++...
T Consensus 246 ----------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 246 ----------RPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp ----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred ----------CCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 0111224578999999999999999999999999988654
No 257
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=2.8e-36 Score=352.01 Aligned_cols=265 Identities=22% Similarity=0.219 Sum_probs=203.6
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC--------CCceeeEEEEEE--
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR--------HRNIVKLYGFCY-- 870 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~l~~~~~-- 870 (1109)
++|++.++||+|+||+||+|++. +++.||||+++. .....+.+.+|++++++++ |+||+++++++.
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~ 113 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKS---AEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKIS 113 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS---CHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEE
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEec---CCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeec
Confidence 68999999999999999999864 688999999962 2334567889999999885 788999999987
Q ss_pred --eCCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCC-CeEecCCCCCceeeCCCC----
Q 001274 871 --HQDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRP-HIIHRDIKSNNILLDEEF---- 943 (1109)
Q Consensus 871 --~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlkp~NIll~~~~---- 943 (1109)
.....++||||+ ++++.+++..... ..+++..+..++.||+.||+||| ++ +|+||||||+|||++.++
T Consensus 114 ~~~~~~~~lv~e~~-~~~l~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~lH---~~~givHrDikp~NIll~~~~~~~~ 188 (397)
T 1wak_A 114 GVNGTHICMVFEVL-GHHLLKWIIKSNY-QGLPLPCVKKIIQQVLQGLDYLH---TKCRIIHTDIKPENILLSVNEQYIR 188 (397)
T ss_dssp ETTEEEEEEEECCC-CCBHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHH---HTTCEECCCCSGGGEEECCCHHHHH
T ss_pred CCCCceEEEEEecc-CccHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCCHHHeeEeccchhhh
Confidence 455789999999 5667666654432 23899999999999999999999 66 999999999999999775
Q ss_pred ---------------------------------------------ceEEeeccccccccCCCCCCccccccccceecccc
Q 001274 944 ---------------------------------------------QAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEY 978 (1109)
Q Consensus 944 ---------------------------------------------~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~ 978 (1109)
.+||+|||.++.... ......||+.|+|||+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~----~~~~~~gt~~y~aPE~ 264 (397)
T 1wak_A 189 RLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHK----HFTEDIQTRQYRSLEV 264 (397)
T ss_dssp HHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTB----CSCSCCSCGGGCCHHH
T ss_pred hhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccc----cCccCCCCCcccCChh
Confidence 799999999987642 2344578999999999
Q ss_pred ccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCc--HHHHHHHhhh--ccCCCchh---------hh----------
Q 001274 979 AYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGD--LVTWVRRSIH--EMVPTSEL---------FD---------- 1035 (1109)
Q Consensus 979 ~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~--~~~~~~~~~~--~~~~~~~~---------~~---------- 1035 (1109)
+.+..++.++||||+||++|||++|+.||........ ....+..... +..+...+ +.
T Consensus 265 ~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (397)
T 1wak_A 265 LIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITK 344 (397)
T ss_dssp HHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCC
T ss_pred hcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccc
Confidence 9999999999999999999999999999986543221 1111111111 11110000 00
Q ss_pred -------hhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1036 -------KRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1036 -------~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
..+........+....+.+++.+||+.||++|||++|++++-+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~ 394 (397)
T 1wak_A 345 LKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 394 (397)
T ss_dssp CCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTSGG
T ss_pred cCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhCcc
Confidence 0000111234566678999999999999999999999998743
No 258
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=1e-35 Score=344.79 Aligned_cols=266 Identities=22% Similarity=0.262 Sum_probs=204.8
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC-CC-----ceeeEEEEEEeCC
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR-HR-----NIVKLYGFCYHQD 873 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l~~~~~~~~ 873 (1109)
.++|++.+.||+|+||+||+|++. +++.||||+++.. ......+..|+++++.++ |+ +|+++++++...+
T Consensus 53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~ 129 (382)
T 2vx3_A 53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK---KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN 129 (382)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS---HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT
T ss_pred eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc---HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC
Confidence 478999999999999999999865 6889999999732 233456778888888774 44 4999999999999
Q ss_pred ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeC--CCCceEEeecc
Q 001274 874 SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLD--EEFQAHVGDFG 951 (1109)
Q Consensus 874 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~--~~~~~kl~DFG 951 (1109)
..++||||++ |+|.+++...... .+++..+..++.|++.||.|||+. +.+|+||||||+||+++ .++.+||+|||
T Consensus 130 ~~~lv~e~~~-~~L~~~l~~~~~~-~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG 206 (382)
T 2vx3_A 130 HLCLVFEMLS-YNLYDLLRNTNFR-GVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFG 206 (382)
T ss_dssp EEEEEEECCC-CBHHHHHHHTTTS-CCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCT
T ss_pred ceEEEEecCC-CCHHHHHhhcCcC-CCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEecc
Confidence 9999999996 5999999875422 389999999999999999999954 46899999999999994 57889999999
Q ss_pred ccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCc
Q 001274 952 LAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTS 1031 (1109)
Q Consensus 952 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1109)
+++.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+....+.....+.. .. .+..
T Consensus 207 ~a~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~~~~~~i~~~-~~--~~~~ 279 (382)
T 2vx3_A 207 SSCQLGQ----RIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEV-LG--IPPA 279 (382)
T ss_dssp TCEETTC----CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHH-HC--SCCH
T ss_pred Cceeccc----ccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH-hC--CCCH
Confidence 9987642 234567899999999999999999999999999999999999999864322222111111 10 1111
Q ss_pred hhhhhhc-------------------------------------------------chhhcccHHHHHHHHHHHHhccCC
Q 001274 1032 ELFDKRL-------------------------------------------------DLSAKRTVEEMTLFLKIALFCSST 1062 (1109)
Q Consensus 1032 ~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~li~~cl~~ 1062 (1109)
...+... .........+...+.+++.+||+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~ 359 (382)
T 2vx3_A 280 HILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDY 359 (382)
T ss_dssp HHHTTCTTHHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCS
T ss_pred HHHHhhHHHHHHHHhccccccccccccccccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCC
Confidence 1100000 000011233446789999999999
Q ss_pred CCCCCCCHHHHHHHHHH
Q 001274 1063 SPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1063 dP~~RPt~~evl~~L~~ 1079 (1109)
||++|||++|++++-+.
T Consensus 360 dP~~Rpta~e~L~hp~f 376 (382)
T 2vx3_A 360 DPKTRIQPYYALQHSFF 376 (382)
T ss_dssp CTTTSCCHHHHTTSGGG
T ss_pred ChhhCCCHHHHhcCccc
Confidence 99999999999987543
No 259
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=1.1e-36 Score=341.47 Aligned_cols=266 Identities=28% Similarity=0.390 Sum_probs=187.7
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.++|++.+.||+|+||+||+|++. +++.||||++..... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (303)
T 2vwi_A 14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKC-QTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVM 92 (303)
T ss_dssp CCCCEEEEECC---CCCEEEEEC----CEEEEECCC-----------------CCCCCCCTTBCCEEEEEESSSCEEEEE
T ss_pred hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhc-chhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEe
Confidence 468999999999999999999864 689999999864422 234567889999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccC-----CCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 880 EYMENGSLGEQLHGN-----KQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~-----~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
||+++++|.+++... .....+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||.+.
T Consensus 93 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~ 169 (303)
T 2vwi_A 93 KLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSA 169 (303)
T ss_dssp ECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHHHH
T ss_pred hhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccchh
Confidence 999999999998641 11224899999999999999999999 7799999999999999999999999999997
Q ss_pred cccCCC----CCCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCC
Q 001274 955 LIDLPY----SKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVP 1029 (1109)
Q Consensus 955 ~~~~~~----~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~ 1029 (1109)
...... ........||+.|+|||++.+ ..++.++||||+|+++|||++|+.||........... ......+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~----~~~~~~~ 245 (303)
T 2vwi_A 170 FLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLML----TLQNDPP 245 (303)
T ss_dssp HCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHH----HHTSSCC
T ss_pred eeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHH----HhccCCC
Confidence 654221 111234578999999999876 5689999999999999999999999986543222211 1111111
Q ss_pred CchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1030 TSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
......... .........+.+++.+||+.||++||++.|++++-+
T Consensus 246 ~~~~~~~~~----~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~ 290 (303)
T 2vwi_A 246 SLETGVQDK----EMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKF 290 (303)
T ss_dssp CTTC---------CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTSTT
T ss_pred ccccccccc----hhhhhhhHHHHHHHHHHccCChhhCcCHHHHhhChh
Confidence 100000000 000111235789999999999999999999998743
No 260
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=1.4e-36 Score=342.25 Aligned_cols=260 Identities=22% Similarity=0.311 Sum_probs=203.1
Q ss_pred HHhcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC--CCceeeEEEEEEeCCceE
Q 001274 799 EATGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR--HRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 799 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~ 876 (1109)
...++|++.+.||+|+||.||+|++.+++.||||++..........+.+.+|++++++++ |+||+++++++...+..+
T Consensus 25 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~ 104 (313)
T 3cek_A 25 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY 104 (313)
T ss_dssp ETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEE
T ss_pred eccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEE
Confidence 345679999999999999999999888999999999866555556678999999999997 599999999999999999
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
+||| +.+++|.+++..... +++..+..++.|+++||+||| +.+|+||||||+||++++ +.+||+|||+++..
T Consensus 105 lv~e-~~~~~L~~~l~~~~~---~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~ 176 (313)
T 3cek_A 105 MVME-CGNIDLNSWLKKKKS---IDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQM 176 (313)
T ss_dssp EEEC-CCSEEHHHHHHHCSS---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEET-TEEEECCCSSSCC-
T ss_pred EEEe-cCCCcHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEEC-CeEEEeeccccccc
Confidence 9999 568899999987553 899999999999999999999 779999999999999964 89999999999876
Q ss_pred cCCCCC-CccccccccceeccccccC-----------CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhh
Q 001274 957 DLPYSK-SMSAIAGSYGYIAPEYAYT-----------MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSI 1024 (1109)
Q Consensus 957 ~~~~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~ 1024 (1109)
...... ......||+.|+|||++.+ ..++.++||||+|+++|||++|+.||.... .....+....
T Consensus 177 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~---~~~~~~~~~~ 253 (313)
T 3cek_A 177 QPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII---NQISKLHAII 253 (313)
T ss_dssp -------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCC---SHHHHHHHHH
T ss_pred cCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHH---HHHHHHHHHH
Confidence 432221 2234578999999999875 468899999999999999999999997532 1122222222
Q ss_pred hccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1025 HEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
...... . +. ......+.+++.+||+.||++||+++|++++-+...
T Consensus 254 ~~~~~~-~-~~----------~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~~~~ 298 (313)
T 3cek_A 254 DPNHEI-E-FP----------DIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQI 298 (313)
T ss_dssp CTTSCC-C-CC----------CCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHC
T ss_pred hccccc-C-Cc----------ccchHHHHHHHHHHccCCcccCcCHHHHhcCccccC
Confidence 111100 0 00 001235779999999999999999999999877654
No 261
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=6.3e-36 Score=350.25 Aligned_cols=264 Identities=26% Similarity=0.291 Sum_probs=195.5
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCC------c
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQD------S 874 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~ 874 (1109)
.+|+..+.||+|+||+||+|++. +++.||||++.... ....+|++++++++||||+++++++.... .
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~------~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~ 127 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVY 127 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT------TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc------hhHHHHHHHHHHcCCCCccceeeEEeccCCCCccee
Confidence 46888899999999999999975 68999999986332 22347999999999999999999986422 2
Q ss_pred eEEEEEeccCCCHHHHhccC-CCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCC-CceEEeeccc
Q 001274 875 NLLLYEYMENGSLGEQLHGN-KQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEE-FQAHVGDFGL 952 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~-~~~kl~DFG~ 952 (1109)
.++||||+++ ++.+.+... .....+++..+..++.||++||+||| +.+|+||||||+|||++.+ +.+||+|||+
T Consensus 128 ~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG~ 203 (420)
T 1j1b_A 128 LNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGS 203 (420)
T ss_dssp EEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred EEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccchh
Confidence 5689999975 666655421 11223899999999999999999999 7899999999999999965 5789999999
Q ss_pred cccccCCCCCCccccccccceeccccccCC-CCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCc
Q 001274 953 AKLIDLPYSKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTS 1031 (1109)
Q Consensus 953 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1109)
++.... ........+|+.|+|||++.+. .++.++||||+||++|||++|+.||.+....+.+...++..- .+..
T Consensus 204 a~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg---~p~~ 278 (420)
T 1j1b_A 204 AKQLVR--GEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLG---TPTR 278 (420)
T ss_dssp CEECCT--TCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHC---SCCH
T ss_pred hhhccc--CCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhC---CCCH
Confidence 987642 2233456789999999998765 799999999999999999999999986432222222222110 0011
Q ss_pred hhhh-----------hhcc---hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1032 ELFD-----------KRLD---LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1032 ~~~~-----------~~~~---~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
+.+. +... ............+.+++.+||+.||++|||+.|+++|-+..
T Consensus 279 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~ 341 (420)
T 1j1b_A 279 EQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 341 (420)
T ss_dssp HHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGG
T ss_pred HHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCCHhhc
Confidence 0000 0000 00000111234678999999999999999999999886653
No 262
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=3.2e-36 Score=346.77 Aligned_cols=269 Identities=24% Similarity=0.306 Sum_probs=206.3
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeC-----Cc
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQ-----DS 874 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 874 (1109)
.++|++.+.||+|+||+||+|++. +++.||||++... ......+.+.+|++++++++||||+++++++... ..
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 104 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPF-EHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD 104 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCT-TCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccc-cCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccce
Confidence 368999999999999999999865 6889999999733 2333457789999999999999999999999765 35
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
.++||||++ |+|.+++.... +++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||.++
T Consensus 105 ~~iv~e~~~-~~L~~~l~~~~----~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~ 176 (364)
T 3qyz_A 105 VYIVQDLME-TDLYKLLKTQH----LSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLAR 176 (364)
T ss_dssp EEEEEECCS-EEHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EEEEEcccC-cCHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcceE
Confidence 799999997 59999987643 899999999999999999999 7799999999999999999999999999998
Q ss_pred cccCCCCC--CccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCc
Q 001274 955 LIDLPYSK--SMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTS 1031 (1109)
Q Consensus 955 ~~~~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1109)
........ ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+........ ... +..
T Consensus 177 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~-~~~--~~~ 253 (364)
T 3qyz_A 177 VADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGI-LGS--PSQ 253 (364)
T ss_dssp ECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHH-HCS--CCH
T ss_pred ecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHH-hCC--CCH
Confidence 76432221 1245689999999998764 45899999999999999999999999865433332222211 111 111
Q ss_pred hhhhhhcch-----------h-----hcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1032 ELFDKRLDL-----------S-----AKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1032 ~~~~~~~~~-----------~-----~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
+.+...... . ..........+.+++.+|++.||++|||++|++++-+...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~ 319 (364)
T 3qyz_A 254 EDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQ 319 (364)
T ss_dssp HHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTT
T ss_pred HHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhh
Confidence 111000000 0 0000112245789999999999999999999999876543
No 263
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=1.1e-35 Score=338.93 Aligned_cols=262 Identities=21% Similarity=0.300 Sum_probs=204.3
Q ss_pred cCCCCCceEecCCcceEEEEEe-c-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCC------ceeeEEEEEEeCC
Q 001274 802 GNFSEGAVIGRGACGTVYKATL-A-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHR------NIVKLYGFCYHQD 873 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~-~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~------niv~l~~~~~~~~ 873 (1109)
++|++.+.||+|+||+||+|++ . +++.||||+++.. ....+.+.+|+++++.++|+ +++++++++...+
T Consensus 14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~ 90 (339)
T 1z57_A 14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV---DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHG 90 (339)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS---HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETT
T ss_pred CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC---CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCC
Confidence 5899999999999999999986 3 6889999999632 23456788999998888655 5999999999999
Q ss_pred ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC------------
Q 001274 874 SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE------------ 941 (1109)
Q Consensus 874 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~------------ 941 (1109)
..++||||+ +++|.+++..... ..+++..+..++.||+.||+||| +.+|+||||||+||+++.
T Consensus 91 ~~~lv~e~~-~~~l~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~ 165 (339)
T 1z57_A 91 HICIVFELL-GLSTYDFIKENGF-LPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPKIK 165 (339)
T ss_dssp EEEEEEECC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC----
T ss_pred cEEEEEcCC-CCCHHHHHHhcCC-CCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCccc
Confidence 999999999 8899999977543 23889999999999999999999 779999999999999987
Q ss_pred -------CCceEEeeccccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCC
Q 001274 942 -------EFQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGG 1014 (1109)
Q Consensus 942 -------~~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~ 1014 (1109)
++.+||+|||.++.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.......
T Consensus 166 ~~~~~~~~~~~kl~Dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~ 241 (339)
T 1z57_A 166 RDERTLINPDIKVVDFGSATYDDE----HHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKE 241 (339)
T ss_dssp CEEEEESCCCEEECCCSSCEETTS----CCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHH
T ss_pred cccccccCCCceEeeCcccccCcc----ccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHH
Confidence 67899999999986442 2344578999999999999999999999999999999999999998543211
Q ss_pred cHHHHHHHhhhccCCCchhhhh-----------------------------hcchhhcccHHHHHHHHHHHHhccCCCCC
Q 001274 1015 DLVTWVRRSIHEMVPTSELFDK-----------------------------RLDLSAKRTVEEMTLFLKIALFCSSTSPL 1065 (1109)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~li~~cl~~dP~ 1065 (1109)
....+.... ...+ ...... ...............+.+++.+||+.||+
T Consensus 242 -~~~~~~~~~-~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~ 318 (339)
T 1z57_A 242 -HLAMMERIL-GPLP-KHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPA 318 (339)
T ss_dssp -HHHHHHHHH-CSCC-HHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTT
T ss_pred -HHHHHHHHh-CCCC-HHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcc
Confidence 111111111 1111 000000 00000011233456789999999999999
Q ss_pred CCCCHHHHHHHHH
Q 001274 1066 NRPTMREVIAMMI 1078 (1109)
Q Consensus 1066 ~RPt~~evl~~L~ 1078 (1109)
+|||++|++++-+
T Consensus 319 ~Rpt~~ell~hp~ 331 (339)
T 1z57_A 319 KRITLREALKHPF 331 (339)
T ss_dssp TSCCHHHHTTSGG
T ss_pred cccCHHHHhcCHH
Confidence 9999999998744
No 264
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=1.3e-36 Score=344.79 Aligned_cols=261 Identities=24% Similarity=0.360 Sum_probs=180.6
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHH-HhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEIS-TLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|+..+.||+|+||+||+|++. +++.||||+++.... ......+..|+. +++.++||||+++++++...+..++||
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVD-EKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCC-HHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccC-chHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 67889999999999999999975 789999999975432 233445566665 778889999999999999999999999
Q ss_pred EeccCCCHHHHhccC--CCCCCCChHHHHHHHHHHHHHHHHHhhcCCC-CeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 880 EYMENGSLGEQLHGN--KQTCLLDWDARYRIALGAAEGLCYLHYDCRP-HIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~--~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
||+++ +|.+++... .....+++..+..++.|++.|+.||| +. +|+||||||+||+++.++.+||+|||+++..
T Consensus 101 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~ 176 (327)
T 3aln_A 101 ELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK---ENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQL 176 (327)
T ss_dssp CCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH---HHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC-
T ss_pred eecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh---ccCCEeECCCCHHHEEEcCCCCEEEccCCCceec
Confidence 99975 887777531 11123899999999999999999999 66 9999999999999999999999999999866
Q ss_pred cCCCCCCccccccccceeccccc----cCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCch
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYA----YTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSE 1032 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1109)
... .......||+.|+|||++ .+..++.++||||||+++|||++|+.||...... .+.+........+.
T Consensus 177 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~~~~~~~~~~-- 249 (327)
T 3aln_A 177 VDS--IAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSV---FDQLTQVVKGDPPQ-- 249 (327)
T ss_dssp -------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC----------CCCCCSCCCC--
T ss_pred ccc--cccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchH---HHHHHHHhcCCCCC--
Confidence 422 222334789999999998 4667899999999999999999999999753211 11111111111000
Q ss_pred hhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1033 LFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
+.. .........+.+++.+||+.||++||++.|++++-+...
T Consensus 250 -~~~------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~ 291 (327)
T 3aln_A 250 -LSN------SEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILM 291 (327)
T ss_dssp -CCC------CSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHH
T ss_pred -CCC------cccccCCHHHHHHHHHHhhCChhhCcCHHHHHhChHHHH
Confidence 000 000112245789999999999999999999998765543
No 265
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=352.82 Aligned_cols=272 Identities=23% Similarity=0.359 Sum_probs=187.7
Q ss_pred CCCC-CceEecCCcceEEEEEec---CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEe--CCceE
Q 001274 803 NFSE-GAVIGRGACGTVYKATLA---NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYH--QDSNL 876 (1109)
Q Consensus 803 ~~~~-~~~lG~G~fg~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~ 876 (1109)
.|.+ +++||+|+||+||+|+++ +++.||||++.... ....+.+|++++++++||||+++++++.. ....+
T Consensus 21 ~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 96 (405)
T 3rgf_A 21 LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG----ISMSACREIALLRELKHPNVISLQKVFLSHADRKVW 96 (405)
T ss_dssp HEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS----CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEE
T ss_pred hhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC----CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEE
Confidence 3554 568999999999999965 57899999996432 23568899999999999999999999965 56789
Q ss_pred EEEEeccCCCHHHHhccCC------CCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee----CCCCceE
Q 001274 877 LLYEYMENGSLGEQLHGNK------QTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL----DEEFQAH 946 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll----~~~~~~k 946 (1109)
+||||++ |+|.+++.... ....+++..++.++.||+.||+||| +.+|+||||||+||++ +.++.+|
T Consensus 97 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~k 172 (405)
T 3rgf_A 97 LLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVK 172 (405)
T ss_dssp EEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTTTTCEE
T ss_pred EEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCCCCcEE
Confidence 9999996 58888775321 1123899999999999999999999 7799999999999999 7788999
Q ss_pred EeeccccccccCCCC--CCccccccccceeccccccCC-CCCccchhHHHHHHHHHHHhCCCCCCCcccC-----CcHHH
Q 001274 947 VGDFGLAKLIDLPYS--KSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSFGVVLLELITGKSPVQSLELG-----GDLVT 1018 (1109)
Q Consensus 947 l~DFG~a~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvll~elltg~~pf~~~~~~-----~~~~~ 1018 (1109)
|+|||+|+....... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||...... ....+
T Consensus 173 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~ 252 (405)
T 3rgf_A 173 IADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHD 252 (405)
T ss_dssp ECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHH
T ss_pred EEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHH
Confidence 999999987653221 223456799999999999874 5899999999999999999999999754321 00111
Q ss_pred HHHHhhhcc-CCCchhhhhhcch------------h-h----------cccHHHHHHHHHHHHhccCCCCCCCCCHHHHH
Q 001274 1019 WVRRSIHEM-VPTSELFDKRLDL------------S-A----------KRTVEEMTLFLKIALFCSSTSPLNRPTMREVI 1074 (1109)
Q Consensus 1019 ~~~~~~~~~-~~~~~~~~~~~~~------------~-~----------~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl 1074 (1109)
.+....... .+....+...... . . .........+.+++.+||+.||++|||++|++
T Consensus 253 ~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L 332 (405)
T 3rgf_A 253 QLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAM 332 (405)
T ss_dssp HHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred HHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 122111111 1111111100000 0 0 00000023577999999999999999999999
Q ss_pred HHHHHhhh
Q 001274 1075 AMMIDARQ 1082 (1109)
Q Consensus 1075 ~~L~~~~~ 1082 (1109)
++-+....
T Consensus 333 ~hp~f~~~ 340 (405)
T 3rgf_A 333 QDPYFLED 340 (405)
T ss_dssp TSGGGTSS
T ss_pred cChhhccC
Confidence 99876543
No 266
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=6e-36 Score=368.26 Aligned_cols=259 Identities=24% Similarity=0.332 Sum_probs=204.5
Q ss_pred hcCCCCCceEecCCcceEEEEEec----CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceE
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA----NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 876 (1109)
.++|++.+.||+|+||+||+|++. .+..||||+++.. ......+.+.+|+.++++++||||+++++++. ++..+
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~ 466 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNC-TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW 466 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSST-TCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCE
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEeccc-CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceE
Confidence 367888999999999999999864 2467999988643 22334577999999999999999999999985 46689
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
+||||+++|+|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 467 lv~E~~~~g~L~~~l~~~~~--~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~~~vkL~DFG~a~~~ 541 (656)
T 2j0j_A 467 IIMELCTLGELRSFLQVRKF--SLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM 541 (656)
T ss_dssp EEEECCTTCBHHHHHHHTTT--TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCCCCSC
T ss_pred EEEEcCCCCcHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCCCCEEEEecCCCeec
Confidence 99999999999999986543 3899999999999999999999 779999999999999999999999999999876
Q ss_pred cCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCCCchhhh
Q 001274 957 DLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVPTSELFD 1035 (1109)
Q Consensus 957 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1109)
............+|+.|+|||++.+..++.++|||||||++|||++ |..||.+... .+............ .
T Consensus 542 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~----~~~~~~i~~~~~~~---~- 613 (656)
T 2j0j_A 542 EDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN----NDVIGRIENGERLP---M- 613 (656)
T ss_dssp CC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH----HHHHHHHHHTCCCC---C-
T ss_pred CCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCH----HHHHHHHHcCCCCC---C-
Confidence 5333333344567889999999999999999999999999999997 9999985432 22222211111100 0
Q ss_pred hhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1036 KRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
.......+.+++.+||+.||++|||+.++++.|..+...
T Consensus 614 ---------~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 614 ---------PPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp ---------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ---------CccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 111124577999999999999999999999999988653
No 267
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=1.6e-36 Score=350.12 Aligned_cols=258 Identities=11% Similarity=0.010 Sum_probs=183.5
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCC-cchhHHHHHHH---HHhccCCCCceeeEE-------EEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEG-ATADNSFLAEI---STLGKIRHRNIVKLY-------GFC 869 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~---~~l~~l~h~niv~l~-------~~~ 869 (1109)
.+|++.+.||+|+||+||+|++. +++.||||++...... ....+.+.+|+ ++++. +||||++++ +++
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehhe
Confidence 45888899999999999999965 7899999999865432 23345677774 45555 799988755 455
Q ss_pred EeCC-----------------ceEEEEEeccCCCHHHHhccCCCCCCCChHHH------HHHHHHHHHHHHHHhhcCCCC
Q 001274 870 YHQD-----------------SNLLLYEYMENGSLGEQLHGNKQTCLLDWDAR------YRIALGAAEGLCYLHYDCRPH 926 (1109)
Q Consensus 870 ~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~------~~i~~~i~~~l~~LH~~~~~~ 926 (1109)
...+ ..++||||++ |+|.+++..... .+++..+ ..++.||+.||+||| +.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~--~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~ 214 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF--VYVFRGDEGILALHILTAQLIRLAANLQ---SKG 214 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTT
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc--ccchhhhhhhhhHHHHHHHHHHHHHHHH---HCC
Confidence 4432 3699999998 899999986432 2455666 788899999999999 779
Q ss_pred eEecCCCCCceeeCCCCceEEeeccccccccCCCCCCccccccccceeccccccC--CCCCccchhHHHHHHHHHHHhCC
Q 001274 927 IIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYT--MKVTEKCDIYSFGVVLLELITGK 1004 (1109)
Q Consensus 927 ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlGvll~elltg~ 1004 (1109)
|+||||||+|||++.++.+||+|||+|+.... ......+|+.|+|||++.+ ..++.++||||+||++|||++|+
T Consensus 215 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~ 290 (371)
T 3q60_A 215 LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGT----RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLF 290 (371)
T ss_dssp EEETTCSGGGEEECTTSCEEECCGGGEEETTC----EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred CccCcCCHHHEEECCCCCEEEEecceeeecCC----CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999986542 1224567799999999987 67999999999999999999999
Q ss_pred CCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1005 SPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1005 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
.||......... ..... ............. ........+.+++.+||+.||++|||+.|++++-+.
T Consensus 291 ~Pf~~~~~~~~~------~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f 356 (371)
T 3q60_A 291 LPFGLVTPGIKG------SWKRP-SLRVPGTDSLAFG--SCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEF 356 (371)
T ss_dssp CSTTBCCTTCTT------CCCBC-CTTSCCCCSCCCT--TSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHH
T ss_pred CCCCCcCccccc------chhhh-hhhhccccccchh--hccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHH
Confidence 999865321100 00000 0000000000000 001223467899999999999999999999987544
No 268
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=7.8e-36 Score=345.17 Aligned_cols=268 Identities=20% Similarity=0.210 Sum_probs=204.2
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC-----------CCceeeEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR-----------HRNIVKLYGFC 869 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~~~ 869 (1109)
++|++.+.||+|+||+||+|++. +++.||||++.. .....+.+.+|++++++++ |+||+++++++
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~---~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~ 95 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRG---DKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHF 95 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS---CHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecC---CccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHh
Confidence 68999999999999999999964 789999999862 2334567889999988876 89999999999
Q ss_pred EeCC----ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCC-CeEecCCCCCceeeC----
Q 001274 870 YHQD----SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRP-HIIHRDIKSNNILLD---- 940 (1109)
Q Consensus 870 ~~~~----~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlkp~NIll~---- 940 (1109)
...+ ..++||||+ +++|.+++...... .+++..+..++.||+.||+||| +. +|+||||||+||+++
T Consensus 96 ~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~-~~~~~~~~~i~~qi~~aL~~lH---~~~~ivH~Dikp~NIll~~~~~ 170 (373)
T 1q8y_A 96 NHKGPNGVHVVMVFEVL-GENLLALIKKYEHR-GIPLIYVKQISKQLLLGLDYMH---RRCGIIHTDIKPENVLMEIVDS 170 (373)
T ss_dssp EEEETTEEEEEEEECCC-CEEHHHHHHHTTTS-CCCHHHHHHHHHHHHHHHHHHH---HTTCEECSCCSGGGEEEEEEET
T ss_pred hccCCCCceEEEEEecC-CCCHHHHHHHhhcc-CCcHHHHHHHHHHHHHHHHHHH---hcCCEEecCCChHHeEEeccCC
Confidence 8654 678999999 89999999765432 3899999999999999999999 66 999999999999994
Q ss_pred --CCCceEEeeccccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccC--CcH
Q 001274 941 --EEFQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELG--GDL 1016 (1109)
Q Consensus 941 --~~~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~--~~~ 1016 (1109)
..+.+||+|||+++.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||...... ...
T Consensus 171 ~~~~~~~kl~Dfg~a~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~ 246 (373)
T 1q8y_A 171 PENLIQIKIADLGNACWYDE----HYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKD 246 (373)
T ss_dssp TTTEEEEEECCCTTCEETTB----CCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CH
T ss_pred CcCcceEEEcccccccccCC----CCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCCh
Confidence 445899999999987642 233457899999999999999999999999999999999999999864311 111
Q ss_pred HHHHHHhhhccCCCchhh----------------------------hhhcchhhcccHHHHHHHHHHHHhccCCCCCCCC
Q 001274 1017 VTWVRRSIHEMVPTSELF----------------------------DKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRP 1068 (1109)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RP 1068 (1109)
...+........+....+ .................+.+++.+||+.||++||
T Consensus 247 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp 326 (373)
T 1q8y_A 247 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA 326 (373)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB
T ss_pred HHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccC
Confidence 111111111111111000 0001111223456677899999999999999999
Q ss_pred CHHHHHHHHHHhh
Q 001274 1069 TMREVIAMMIDAR 1081 (1109)
Q Consensus 1069 t~~evl~~L~~~~ 1081 (1109)
|++|++++-+...
T Consensus 327 t~~ell~hp~f~~ 339 (373)
T 1q8y_A 327 DAGGLVNHPWLKD 339 (373)
T ss_dssp CHHHHHTCGGGTT
T ss_pred CHHHHhhChhhhc
Confidence 9999999876543
No 269
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=3.6e-36 Score=337.15 Aligned_cols=254 Identities=29% Similarity=0.446 Sum_probs=193.8
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEe--------
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYH-------- 871 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-------- 871 (1109)
.++|++.+.||+|+||+||+|++. +++.||||++... ....+.+.+|++++++++||||+++++++.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~ 81 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT---EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPM 81 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE---HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC--
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc---HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhh
Confidence 467899999999999999999975 7999999999632 2345678899999999999999999999865
Q ss_pred -----CCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceE
Q 001274 872 -----QDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAH 946 (1109)
Q Consensus 872 -----~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~k 946 (1109)
.+..++||||+++|+|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+|
T Consensus 82 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlkp~Nil~~~~~~~k 156 (303)
T 1zy4_A 82 TAVKKKSTLFIQMEYCENGTLYDLIHSENL--NQQRDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVK 156 (303)
T ss_dssp ----CEEEEEEEEECCCSCBHHHHHHHSCG--GGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEE
T ss_pred cccccCCceEEEEecCCCCCHHHhhhcccc--ccchHHHHHHHHHHHHHHHHHH---hCCeecccCCHHhEEEcCCCCEE
Confidence 3456899999999999999986543 3788999999999999999999 77999999999999999999999
Q ss_pred EeeccccccccCCC-------------CCCccccccccceeccccccCC-CCCccchhHHHHHHHHHHHhCCCCCCCccc
Q 001274 947 VGDFGLAKLIDLPY-------------SKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSFGVVLLELITGKSPVQSLEL 1012 (1109)
Q Consensus 947 l~DFG~a~~~~~~~-------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvll~elltg~~pf~~~~~ 1012 (1109)
|+|||.++...... ........||+.|+|||++.+. .++.++||||+||++|||++ ||....
T Consensus 157 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~- 232 (303)
T 1zy4_A 157 IGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGM- 232 (303)
T ss_dssp ECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHH-
T ss_pred EeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCch-
Confidence 99999998654221 1122345689999999998865 68999999999999999998 554321
Q ss_pred CCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1013 GGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
................... ........+.+++.+||+.||++|||+++++++-+
T Consensus 233 --~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~ 286 (303)
T 1zy4_A 233 --ERVNILKKLRSVSIEFPPD----------FDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGW 286 (303)
T ss_dssp --HHHHHHHHHHSTTCCCCTT----------CCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHSSC
T ss_pred --hHHHHHHhccccccccCcc----------ccccchHHHHHHHHHHHhcCcccCcCHHHHhCCCC
Confidence 1112222211111111111 11122345779999999999999999999998754
No 270
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=341.53 Aligned_cols=257 Identities=23% Similarity=0.337 Sum_probs=184.4
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
++|+..+.||+|+||+||+|++. +++.||||++..........+.+.++..+++.++||||+++++++...+..++|||
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e 104 (318)
T 2dyl_A 25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAME 104 (318)
T ss_dssp GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEe
Confidence 57888899999999999999975 68999999997554333333444555567888899999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCC-CeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRP-HIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
|+ ++.+..+...... .+++..+..++.|+++||.||| +. +|+||||||+||+++.++.+||+|||++......
T Consensus 105 ~~-~~~~~~l~~~~~~--~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~ 178 (318)
T 2dyl_A 105 LM-GTCAEKLKKRMQG--PIPERILGKMTVAIVKALYYLK---EKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDD 178 (318)
T ss_dssp CC-SEEHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred cc-CCcHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHH---hhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCC
Confidence 99 5566555543222 3899999999999999999999 53 8999999999999999999999999999765422
Q ss_pred CCCCccccccccceecccccc-----CCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhh
Q 001274 960 YSKSMSAIAGSYGYIAPEYAY-----TMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELF 1034 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1109)
.......+|+.|+|||++. +..++.++||||+|+++|||++|+.||.... ...+.+........+....
T Consensus 179 --~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~---~~~~~~~~~~~~~~~~~~~- 252 (318)
T 2dyl_A 179 --KAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCK---TDFEVLTKVLQEEPPLLPG- 252 (318)
T ss_dssp ----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCC---SHHHHHHHHHHSCCCCCCS-
T ss_pred --ccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCC---ccHHHHHHHhccCCCCCCc-
Confidence 2233457899999999984 5568999999999999999999999997532 2222233322222111100
Q ss_pred hhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1035 DKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
. ......+.+++.+||+.||++||+++|++++-+..
T Consensus 253 --~--------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~ 288 (318)
T 2dyl_A 253 --H--------MGFSGDFQSFVKDCLTKDHRKRPKYNKLLEHSFIK 288 (318)
T ss_dssp --S--------SCCCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHH
T ss_pred --c--------CCCCHHHHHHHHHHccCChhHCcCHHHHhhCHHHH
Confidence 0 01123577999999999999999999999876543
No 271
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=8.3e-36 Score=341.92 Aligned_cols=262 Identities=22% Similarity=0.308 Sum_probs=200.5
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCc------
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDS------ 874 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------ 874 (1109)
++|...+.||+|+||+||+|++. +|+.||||++..........+.+.+|+.++++++||||+++++++...+.
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 103 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD 103 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence 57888999999999999999975 68999999997554444445778999999999999999999999987654
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
.++||||++ ++|.+++.. .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 104 ~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~ 174 (353)
T 3coi_A 104 FYLVMPFMQ-TDLQKIMGL-----KFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLAR 174 (353)
T ss_dssp CEEEEECCS-EEGGGTTTS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTTCTT
T ss_pred EEEEecccc-CCHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeeccccc
Confidence 399999997 688887743 2899999999999999999999 7799999999999999999999999999998
Q ss_pred cccCCCCCCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhcc-CCCch
Q 001274 955 LIDLPYSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEM-VPTSE 1032 (1109)
Q Consensus 955 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~-~~~~~ 1032 (1109)
.... ......+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+... .+.+....... .+..+
T Consensus 175 ~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~----~~~~~~i~~~~~~~~~~ 246 (353)
T 3coi_A 175 HADA----EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY----LDQLTQILKVTGVPGTE 246 (353)
T ss_dssp C------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCH----HHHHHHHHHHHCBCCHH
T ss_pred CCCC----CccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHHHhCCCCHH
Confidence 6542 2344578999999999887 6789999999999999999999999986432 22222111110 01111
Q ss_pred hhhhhcc-----------h-----hhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1033 LFDKRLD-----------L-----SAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1033 ~~~~~~~-----------~-----~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
....... . -..........+.+++.+|++.||++|||++|++++-+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~ 310 (353)
T 3coi_A 247 FVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFE 310 (353)
T ss_dssp HHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGT
T ss_pred HHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchh
Confidence 1100000 0 0000112235688999999999999999999999886543
No 272
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=1.1e-35 Score=337.97 Aligned_cols=259 Identities=21% Similarity=0.234 Sum_probs=175.9
Q ss_pred hcCCCCCc-eEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHH-HHhccCCCCceeeEEEEEEe----CC
Q 001274 801 TGNFSEGA-VIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEI-STLGKIRHRNIVKLYGFCYH----QD 873 (1109)
Q Consensus 801 ~~~~~~~~-~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~-~~l~~l~h~niv~l~~~~~~----~~ 873 (1109)
.++|.+.+ .||+|+||+||+|++. +++.||||++... ....+|+ ..++.++||||+++++++.. ..
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 99 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-------PKARQEVDHHWQASGGPHIVCILDVYENMHHGKR 99 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-------HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCc
Confidence 36788854 6999999999999976 6999999999621 1222333 34566799999999999876 34
Q ss_pred ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC---CCceEEeec
Q 001274 874 SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE---EFQAHVGDF 950 (1109)
Q Consensus 874 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kl~DF 950 (1109)
..++||||+++|+|.+++..... ..+++..+..++.||+.||+||| +.+|+||||||+||+++. ++.+||+||
T Consensus 100 ~~~lv~e~~~gg~L~~~l~~~~~-~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~Df 175 (336)
T 3fhr_A 100 CLLIIMECMEGGELFSRIQERGD-QAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDF 175 (336)
T ss_dssp EEEEEEECCTTEEHHHHHHTC-C-CCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCC
T ss_pred eEEEEEeccCCCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEecc
Confidence 57899999999999999987543 24899999999999999999999 779999999999999976 456999999
Q ss_pred cccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCC
Q 001274 951 GLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPT 1030 (1109)
Q Consensus 951 G~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1109)
|+++.... .......+|+.|+|||++.+..++.++||||+|+++|+|++|+.||.......................
T Consensus 176 g~~~~~~~---~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 252 (336)
T 3fhr_A 176 GFAKETTQ---NALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGF 252 (336)
T ss_dssp TTCEEC-------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------CC
T ss_pred ccceeccc---cccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhcccccc
Confidence 99986542 223445789999999999888999999999999999999999999975432211111111111111000
Q ss_pred chhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1031 SELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
... ........+.+++.+||+.||++|||++|++++-+.....
T Consensus 253 ~~~----------~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~ 295 (336)
T 3fhr_A 253 PNP----------EWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWINQSM 295 (336)
T ss_dssp CTT----------TSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTGG
T ss_pred Cch----------hhccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccccccc
Confidence 000 0011224577999999999999999999999988765433
No 273
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=335.12 Aligned_cols=266 Identities=23% Similarity=0.332 Sum_probs=196.3
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEE----------
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCY---------- 870 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~---------- 870 (1109)
++|++.+.||+|+||+||+|++. +++.||||++... .....+.+.+|++++++++||||+++++++.
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 88 (320)
T 2i6l_A 11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT--DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDV 88 (320)
T ss_dssp TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC--SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC--
T ss_pred CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC--ChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccc
Confidence 68899999999999999999976 5899999998743 2345577899999999999999999999874
Q ss_pred ----eCCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeC-CCCce
Q 001274 871 ----HQDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLD-EEFQA 945 (1109)
Q Consensus 871 ----~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~-~~~~~ 945 (1109)
.....++||||++ |+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++ .++.+
T Consensus 89 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~ 160 (320)
T 2i6l_A 89 GSLTELNSVYIVQEYME-TDLANVLEQG----PLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLVL 160 (320)
T ss_dssp --CCSCSEEEEEEECCS-EEHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTTEE
T ss_pred ccccccCceeEEeeccC-CCHHHHhhcC----CccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCeE
Confidence 3356789999997 6999999653 2899999999999999999999 77999999999999997 56799
Q ss_pred EEeeccccccccCCC--CCCccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHH
Q 001274 946 HVGDFGLAKLIDLPY--SKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRR 1022 (1109)
Q Consensus 946 kl~DFG~a~~~~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~ 1022 (1109)
||+|||.++...... ........+|..|+|||++.+ ..++.++||||+|+++|||++|+.||.+... .+....
T Consensus 161 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~----~~~~~~ 236 (320)
T 2i6l_A 161 KIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHE----LEQMQL 236 (320)
T ss_dssp EECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHH
T ss_pred EEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCH----HHHHHH
Confidence 999999998764221 122244567899999998865 6789999999999999999999999986432 122221
Q ss_pred hhhccCCCc-hh-----------hhhhcchh----hcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhh
Q 001274 1023 SIHEMVPTS-EL-----------FDKRLDLS----AKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDAR 1081 (1109)
Q Consensus 1023 ~~~~~~~~~-~~-----------~~~~~~~~----~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~ 1081 (1109)
......... +. ........ ..........+.+++.+||+.||++|||++|++++-+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~ 311 (320)
T 2i6l_A 237 ILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYMSI 311 (320)
T ss_dssp HHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTSHHHHT
T ss_pred HHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCCccccc
Confidence 111111000 00 00000000 0001112356889999999999999999999999877653
No 274
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.5e-35 Score=342.88 Aligned_cols=350 Identities=21% Similarity=0.186 Sum_probs=231.9
Q ss_pred CCCCCCCCCCCCc-cceeeecCCeEEEEeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCceEEccC
Q 001274 51 LESWNSSDMTPCN-WIGVECTDFKVTSVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCT 129 (1109)
Q Consensus 51 ~~~W~~~~~~~c~-w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~ 129 (1109)
+++|... .+||. |.++.|....| .++-.... ......-..+++++.|++++|.++..-+..+..+++|++|+|++
T Consensus 3 ~~~~~~~-~~C~~~~~~~~c~~~~~-~i~~~~~~--~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~ 78 (390)
T 3o6n_A 3 VKPRQPE-YKCIDSNLQYDCVFYDV-HIDMQTQD--VYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 78 (390)
T ss_dssp ----CCE-ECBCC------EEEESC-EECSSCCC--CEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTT
T ss_pred cCCCCCc-cceehhhhhhccceeee-eeeccccc--ccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCC
Confidence 6889875 46664 66665632111 11222111 11222223567888888888887754444578888888888888
Q ss_pred CcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccccccCCCC
Q 001274 130 NRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGPIP 209 (1109)
Q Consensus 130 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 209 (1109)
|.+++..+..+..+++|++|+|++|.+++..|..++++++|++|+|++|+++...+..|+++++|++|++++|.+++..|
T Consensus 79 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 79 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh
Confidence 88887777788888888888888888887777778888888888888888884444446788888888888888887777
Q ss_pred ccccccccchhhhcccccccccCchhhhccccccceecccccccCCCCCCccccccccceeeeeccceecCchhhhccCc
Q 001274 210 PEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGGLPKELGKLSR 289 (1109)
Q Consensus 210 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 289 (1109)
..|+.+++|++|++++|++++. .+..+++|++|++++|.+++. ...++|++|++++|.++.. |.. ..++
T Consensus 159 ~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~ 227 (390)
T 3o6n_A 159 DTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVE 227 (390)
T ss_dssp TTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSS
T ss_pred hhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--cccc
Confidence 7788888888888888888754 356677788888888877632 2334677777777777644 322 2466
Q ss_pred cceEEeecccccCccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEccc
Q 001274 290 LKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSI 369 (1109)
Q Consensus 290 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 369 (1109)
|+.|++++|.+++. ..+..+++|++|+|++|.+++..|..+..+++|+.|++++|.+++ +|..+..+++|++|++++
T Consensus 228 L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 228 LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCS
T ss_pred ccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCC
Confidence 77777777777643 456677777777777777776666677777777777777777664 344555666777777777
Q ss_pred CcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccC
Q 001274 370 NNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDG 422 (1109)
Q Consensus 370 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~ 422 (1109)
|+++ .+|..+..+++|+.|++++|.++.. + +..+++|++|++++|++..
T Consensus 305 n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 305 NHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred Ccce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 7766 4555566666677777777766533 2 4455666666666666653
No 275
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=1.4e-35 Score=340.15 Aligned_cols=269 Identities=24% Similarity=0.325 Sum_probs=201.9
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeC-----Cc
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQ-----DS 874 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 874 (1109)
.++|++.+.||+|+||+||+|++. +|+.||||++... ........+.+|++++++++||||+++++++... ..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 88 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPF-DKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNE 88 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCC
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeeccc-ccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccce
Confidence 368999999999999999999975 6899999999633 2233456788999999999999999999988764 56
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
.++||||++ |+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 89 ~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~ 160 (353)
T 2b9h_A 89 VYIIQELMQ-TDLHRVISTQ----MLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLAR 160 (353)
T ss_dssp EEEEECCCS-EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EEEEEeccC-ccHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEeccccc
Confidence 799999997 6999998763 2899999999999999999999 7799999999999999999999999999998
Q ss_pred cccCCCCC---------CccccccccceeccccccC-CCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhh
Q 001274 955 LIDLPYSK---------SMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSI 1024 (1109)
Q Consensus 955 ~~~~~~~~---------~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~ 1024 (1109)
........ ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.......... ....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~-~~~~ 239 (353)
T 2b9h_A 161 IIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLI-FGII 239 (353)
T ss_dssp ECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH-HHHH
T ss_pred ccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHH-HHHh
Confidence 76422111 1233578999999998764 67899999999999999999999999864321111111 1111
Q ss_pred hccCCCchhhh-----------hhcchh-----hcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHh
Q 001274 1025 HEMVPTSELFD-----------KRLDLS-----AKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1025 ~~~~~~~~~~~-----------~~~~~~-----~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~ 1080 (1109)
.. ........ ...... ..........+.+++.+||+.||++|||++|++++-+..
T Consensus 240 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~ 310 (353)
T 2b9h_A 240 GT-PHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEHPYLQ 310 (353)
T ss_dssp CC-CCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGT
T ss_pred CC-CchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcCcccc
Confidence 10 00000000 000000 000112234578999999999999999999999986654
No 276
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.9e-35 Score=361.25 Aligned_cols=334 Identities=20% Similarity=0.212 Sum_probs=259.6
Q ss_pred CCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceee
Q 001274 359 LTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLS 438 (1109)
Q Consensus 359 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 438 (1109)
+.+++.|++++|.+....+..|.++++|+.|+|++|.+++..|..|+.+++|++|+|++|.+.+..|..|.++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45667777777777755555667777777777777777766666777777777777777777777777777777777777
Q ss_pred cCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCC
Q 001274 439 LGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVG 518 (1109)
Q Consensus 439 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 518 (1109)
|++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++. .+..+++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc
Confidence 777777766666677778888888888888877777788888888888888888765 25567778888888887764
Q ss_pred CCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCC
Q 001274 519 YIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGG 598 (1109)
Q Consensus 519 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 598 (1109)
+...++|+.|++++|.++.. |..+ .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++..|..|++
T Consensus 207 -----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp -----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred -----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 33456788888888888744 3333 2578888888888885 467888888888888888888888888888
Q ss_pred CcccceeeccCccccccccccccccchhhhhhccCCccccccccccccCccccceeecCCCccccCCchhhhccccceEE
Q 001274 599 LARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIPASMGEQMSLLVC 678 (1109)
Q Consensus 599 l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l 678 (1109)
+++|+.|+|++|.+++ +|..+..++.|. .|+|++|.++ .+|..++.+++|+.|||++|++++. | +..+++|+.|
T Consensus 277 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~-~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L 350 (597)
T 3oja_B 277 MQRLERLYISNNRLVA-LNLYGQPIPTLK-VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 350 (597)
T ss_dssp CSSCCEEECTTSCCCE-EECSSSCCTTCC-EEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred ccCCCEEECCCCCCCC-CCcccccCCCCc-EEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEE
Confidence 8888888888888885 577777777876 5889999988 5677889999999999999999854 3 6678899999
Q ss_pred EccCcccccccCCCcccccccCCcccCCCCcccc
Q 001274 679 NLSNNNLVGTVPNTTVFRRIDSSNFAGNRGLCML 712 (1109)
Q Consensus 679 ~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~~c~~ 712 (1109)
+|++|+++|..+. ..+..+....+.++...|+.
T Consensus 351 ~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 351 TLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp ECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred EeeCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence 9999999988643 35677888889999999964
No 277
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.3e-35 Score=339.48 Aligned_cols=333 Identities=20% Similarity=0.217 Sum_probs=263.7
Q ss_pred CCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceee
Q 001274 359 LTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLS 438 (1109)
Q Consensus 359 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 438 (1109)
+.++++|++++|.++...+..|.++++|++|+|++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 56777888888877755555577778888888888888777677777888888888888888877777788888888888
Q ss_pred cCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCC
Q 001274 439 LGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVG 518 (1109)
Q Consensus 439 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 518 (1109)
|++|+++...+..|..+++|++|++++|++++..+..|.++++|++|++++|++++. .+..+++|+.|++++|.+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 888888866555677888888888888888877777888888888888888888765 35667888888888888764
Q ss_pred CCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCC
Q 001274 519 YIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGG 598 (1109)
Q Consensus 519 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 598 (1109)
+...++|+.|++++|+++.. |... .++|+.|++++|++++. ..+..+++|+.|+|++|++++..|..|..
T Consensus 201 -----~~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 201 -----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp -----EECCSSCSEEECCSSCCCEE-ECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred -----cCCCCcceEEECCCCeeeec-cccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 23456788888888888844 4332 47888899999988853 57888888999999999988888888888
Q ss_pred CcccceeeccCccccccccccccccchhhhhhccCCccccccccccccCccccceeecCCCccccCCchhhhccccceEE
Q 001274 599 LARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIPASMGEQMSLLVC 678 (1109)
Q Consensus 599 l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l 678 (1109)
+++|+.|++++|++++ +|..+..++.|+ .|+|++|+++ .+|..++.+++|+.|+|++|++++ +| +..++.|+.|
T Consensus 271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~-~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L 344 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-LNLYGQPIPTLK-VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNL 344 (390)
T ss_dssp CSSCCEEECCSSCCCE-EECSSSCCTTCC-EEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEE
T ss_pred cccCCEEECCCCcCcc-cCcccCCCCCCC-EEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEE
Confidence 8999999999998884 566667778886 5899999998 457778899999999999999984 44 6778899999
Q ss_pred EccCcccccccCCCcccccccCCcccCCCCccc
Q 001274 679 NLSNNNLVGTVPNTTVFRRIDSSNFAGNRGLCM 711 (1109)
Q Consensus 679 ~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~~c~ 711 (1109)
++++|++.|.... ..+..+....+.+++..|.
T Consensus 345 ~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 345 TLSHNDWDCNSLR-ALFRNVARPAVDDADQHCK 376 (390)
T ss_dssp ECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCC
T ss_pred EcCCCCccchhHH-HHHHHHHhhcccccCceec
Confidence 9999999986543 3456667777888877774
No 278
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=8.2e-36 Score=337.17 Aligned_cols=279 Identities=20% Similarity=0.271 Sum_probs=167.9
Q ss_pred CCCchhHHHHHHHHHHhc-CCCCCCCCCCC---CCCCCCCccceeeecC----------CeEEEEeccCccccccccccc
Q 001274 27 VTSLTEEGVSLLEFKASL-IDPSNNLESWN---SSDMTPCNWIGVECTD----------FKVTSVDLHGLNLSGILSPRI 92 (1109)
Q Consensus 27 ~~~~~~~~~all~~k~~~-~~~~~~~~~W~---~~~~~~c~w~gv~C~~----------~~v~~l~l~~~~l~g~~~~~~ 92 (1109)
.++..+|++||++||+++ .||.+.+++|. ....++|.|.||+|+. .+|+.++|+++++. .+|+.+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 345678999999999999 58877789994 3345889999999952 45666666666665 555556
Q ss_pred cCccccceeecccCccCCCCCccccCCCCCceEEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCce
Q 001274 93 CDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEE 172 (1109)
Q Consensus 93 ~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 172 (1109)
+++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++.+++|++|+|++|.+.+.+|..++..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~----- 173 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST----- 173 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE-----
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc-----
Confidence 66666666666666666 56666666666666666666665 555556666666666666655555555554430
Q ss_pred EEeecCCCCCCCCcccccccccceeccccccccCCCCccccccccchhhhcccccccccCchhhhccccccceecccccc
Q 001274 173 LVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHL 252 (1109)
Q Consensus 173 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l 252 (1109)
.++..+.++++|++|++++|+++ .+|..++.+++|++|+|++|.+++ +|..+..+++|++|+|++|.+
T Consensus 174 ----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 174 ----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp ----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTT
T ss_pred ----------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcc
Confidence 00001112455555555555554 444455555555555555555553 334455555555566655555
Q ss_pred cCCCCCCccccccccceeeeeccceecCchhhhccCccceEEeecccccCccCcccCCCCcCcEEEccCCccc
Q 001274 253 SGEIPPTIGNIQSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLT 325 (1109)
Q Consensus 253 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 325 (1109)
.+.+|..++.+++|++|+|++|++.+.+|..++++++|++|++++|.+.+.+|..++++++|+.+++..+.+.
T Consensus 242 ~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 5555555556666666666665555556655666666666666666666566666666666666665554443
No 279
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=5e-35 Score=335.88 Aligned_cols=264 Identities=21% Similarity=0.289 Sum_probs=203.2
Q ss_pred cCCCCCceEecCCcceEEEEEec-CC-cEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCc------eeeEEEEEEeCC
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NG-EVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRN------IVKLYGFCYHQD 873 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~-~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~ 873 (1109)
++|++.+.||+|+||+||+|++. ++ +.||||+++. .....+.+.+|++++++++|++ ++.+++++...+
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~---~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRN---VGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG 95 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECS---CHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETT
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcc---cccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCC
Confidence 68999999999999999999875 34 7899999963 2334567888999999887655 999999999999
Q ss_pred ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceee--------------
Q 001274 874 SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILL-------------- 939 (1109)
Q Consensus 874 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll-------------- 939 (1109)
..++||||+ ++++.+++..... ..+++..+..++.||+.||+||| +.+|+||||||+||++
T Consensus 96 ~~~lv~e~~-~~~l~~~l~~~~~-~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~ 170 (355)
T 2eu9_A 96 HMCIAFELL-GKNTFEFLKENNF-QPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHKS 170 (355)
T ss_dssp EEEEEEECC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-C
T ss_pred eEEEEEecc-CCChHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeccccccccccccc
Confidence 999999999 6677777765442 23899999999999999999999 7899999999999999
Q ss_pred -----CCCCceEEeeccccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCC
Q 001274 940 -----DEEFQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGG 1014 (1109)
Q Consensus 940 -----~~~~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~ 1014 (1109)
+.++.+||+|||+++... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.......
T Consensus 171 ~~~~~~~~~~~kl~Dfg~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~ 246 (355)
T 2eu9_A 171 CEEKSVKNTSIRVADFGSATFDH----EHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENRE 246 (355)
T ss_dssp CCEEEESCCCEEECCCTTCEETT----SCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred ccccccCCCcEEEeecCcccccc----ccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 567899999999998643 22344679999999999999999999999999999999999999998543211
Q ss_pred cHHHHHHHhhhccCCCchhhhhh-----------------------------cchhhcccHHHHHHHHHHHHhccCCCCC
Q 001274 1015 DLVTWVRRSIHEMVPTSELFDKR-----------------------------LDLSAKRTVEEMTLFLKIALFCSSTSPL 1065 (1109)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~li~~cl~~dP~ 1065 (1109)
....+.... ...| ....... ..............+.+++.+||+.||+
T Consensus 247 -~~~~~~~~~-~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~ 323 (355)
T 2eu9_A 247 -HLVMMEKIL-GPIP-SHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPA 323 (355)
T ss_dssp -HHHHHHHHH-CCCC-HHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTT
T ss_pred -HHHHHHHHc-CCCc-HHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChh
Confidence 111111111 1111 1110000 0000011223345788999999999999
Q ss_pred CCCCHHHHHHHHHHh
Q 001274 1066 NRPTMREVIAMMIDA 1080 (1109)
Q Consensus 1066 ~RPt~~evl~~L~~~ 1080 (1109)
+|||++|++++-+..
T Consensus 324 ~Rpt~~e~l~hp~f~ 338 (355)
T 2eu9_A 324 QRITLAEALLHPFFA 338 (355)
T ss_dssp TSCCHHHHTTSGGGG
T ss_pred hCcCHHHHhcChhhc
Confidence 999999999875543
No 280
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=1.3e-35 Score=335.28 Aligned_cols=245 Identities=21% Similarity=0.343 Sum_probs=200.8
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCc----chhHHHHHHHHHhccCC--CCceeeEEEEEEeCC
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGA----TADNSFLAEISTLGKIR--HRNIVKLYGFCYHQD 873 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~ 873 (1109)
.++|++.+.||+|+||+||+|++. +++.||||++....... ...+.+.+|+.++++++ |+||+++++++...+
T Consensus 42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~ 121 (320)
T 3a99_A 42 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD 121 (320)
T ss_dssp TTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred cCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCC
Confidence 368999999999999999999864 68999999997654322 12355778999999996 599999999999999
Q ss_pred ceEEEEEeccC-CCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeC-CCCceEEeecc
Q 001274 874 SNLLLYEYMEN-GSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLD-EEFQAHVGDFG 951 (1109)
Q Consensus 874 ~~~lv~e~~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~-~~~~~kl~DFG 951 (1109)
..++|||++.+ ++|.+++..... +++..+..++.||++||+||| +.+|+||||||+||+++ .++.+||+|||
T Consensus 122 ~~~lv~e~~~~~~~L~~~l~~~~~---l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg 195 (320)
T 3a99_A 122 SFVLILERPEPVQDLFDFITERGA---LQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFG 195 (320)
T ss_dssp EEEEEEECCSSEEEHHHHHHHHCS---CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCT
T ss_pred cEEEEEEcCCCCccHHHHHhccCC---CCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCCCCCEEEeeCc
Confidence 99999999986 899999976543 899999999999999999999 77999999999999999 78999999999
Q ss_pred ccccccCCCCCCccccccccceeccccccCCCC-CccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCC
Q 001274 952 LAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPT 1030 (1109)
Q Consensus 952 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1109)
+++.... .......||+.|+|||++.+..+ +.++||||||+++|||++|+.||.... ... ......
T Consensus 196 ~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~------~~~----~~~~~~ 262 (320)
T 3a99_A 196 SGALLKD---TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------EII----RGQVFF 262 (320)
T ss_dssp TCEECCS---SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HHH----HCCCCC
T ss_pred ccccccc---ccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh------hhh----cccccc
Confidence 9987652 22344578999999999887776 688999999999999999999997521 111 111100
Q ss_pred chhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Q 001274 1031 SELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMI 1078 (1109)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~ 1078 (1109)
.. .....+.+++.+||+.||++|||++|++++-+
T Consensus 263 ----~~----------~~~~~~~~li~~~l~~dp~~Rps~~~ll~hp~ 296 (320)
T 3a99_A 263 ----RQ----------RVSSECQHLIRWCLALRPSDRPTFEEIQNHPW 296 (320)
T ss_dssp ----SS----------CCCHHHHHHHHHHTCSSGGGSCCHHHHHTSGG
T ss_pred ----cc----------cCCHHHHHHHHHHccCChhhCcCHHHHhcCHh
Confidence 00 01235779999999999999999999998754
No 281
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.9e-35 Score=357.93 Aligned_cols=350 Identities=20% Similarity=0.163 Sum_probs=199.1
Q ss_pred CCCCCCCCCCCCCCCCc----cceeeecCCeEEEEeccCccccccccccccCccccceeecccCccCCCCCccccCCCCC
Q 001274 47 PSNNLESWNSSDMTPCN----WIGVECTDFKVTSVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSL 122 (1109)
Q Consensus 47 ~~~~~~~W~~~~~~~c~----w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L 122 (1109)
....+++|..+ .+||. |.++.|+. .++........ ...-..+++++.|++++|.+++..+..++++++|
T Consensus 5 ~~~~l~~~~~~-~~C~~~~~~~~c~~~~~----~i~~~~~~~~~--~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L 77 (597)
T 3oja_B 5 QRYNVKPRQPE-YKCIDSNLQYDCVFYDV----HIDMQTQDVYF--GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77 (597)
T ss_dssp ------CCCSE-ECCCCC--CCSEEECSC----EECSSCCCCEE--SCSSGGGCCCSEEEESSCEESEECTHHHHHCCCC
T ss_pred ccccccCCCCC-CcCcccCcCceeEecCc----eeccccccccc--CcccccCCCceEEEeeCCCCCCcCHHHHccCCCC
Confidence 34468899875 46664 66655531 12222222111 1112245677777777777765545556777777
Q ss_pred ceEEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccc
Q 001274 123 EILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHN 202 (1109)
Q Consensus 123 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 202 (1109)
++|+|++|.+++..|..++.+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|+++++|++|+|++|
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC
Confidence 77777777777766667777777777777777777766667777777777777777777544444577777777777777
Q ss_pred cccCCCCccccccccchhhhcccccccccCchhhhccccccceecccccccCCCCCCccccccccceeeeeccceecCch
Q 001274 203 SLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGGLPK 282 (1109)
Q Consensus 203 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 282 (1109)
.+++..|..|+.+++|++|+|++|.+++.. +..+++|++|++++|.+++ +....+|+.|++++|.++...+.
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 158 NLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp CCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS
T ss_pred cCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc
Confidence 777666666777777777777777766542 4455666666666666653 22234566666666666533221
Q ss_pred hhhccCccceEEeecccccCccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCc
Q 001274 283 ELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQL 362 (1109)
Q Consensus 283 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 362 (1109)
+ .++|+.|++++|.+++ +..+..+++|++|+|++|.+++.+|..++.+++|+.|+|++|.+.+ +|..+..+++|
T Consensus 230 -~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L 303 (597)
T 3oja_B 230 -V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 303 (597)
T ss_dssp -C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTC
T ss_pred -c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCC
Confidence 1 1455555555555553 2445555555555555555555555555555555555555555543 23344445555
Q ss_pred cEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEecccccc
Q 001274 363 HKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLD 421 (1109)
Q Consensus 363 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~ 421 (1109)
++|+|++|.++ .+|..+..+++|+.|+|++|.+.+.. +..+++|++|++++|.+.
T Consensus 304 ~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred cEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCC
Confidence 55555555554 34444444555555555555544321 333344444444444443
No 282
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.9e-35 Score=329.66 Aligned_cols=257 Identities=30% Similarity=0.481 Sum_probs=181.7
Q ss_pred ccceeecccccccc--cCCccccCCcccceecccc-ccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEE
Q 001274 457 SLMQLMLGQNQLTG--SLPIEFYNLQNLSALELYQ-NRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTF 533 (1109)
Q Consensus 457 ~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 533 (1109)
+++.|+|++|++++ .+|..|.++++|++|+|++ |.+.+.+|..|.++++|++|+|++|++++.+|..|.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555555 5555566666666666663 56665556666666666666666666665566666666666666
Q ss_pred ecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCccccccc-ccceecccccccccccCcccCCCcccceeeccCccc
Q 001274 534 NISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLV-NLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIF 612 (1109)
Q Consensus 534 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 612 (1109)
+|++|++++.+|..+..+++|++|+|++|++++.+|..+..++ +|+.|+|++|++++.+|..|..++ |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 6666666666666666666666666666666655666666665 666666666666666666666655 66666666666
Q ss_pred cccccccccccchhhhhhccCCccccccccccccCccccceeecCCCccccCCchhhhccccceEEEccCcccccccCCC
Q 001274 613 SGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIPASMGEQMSLLVCNLSNNNLVGTVPNT 692 (1109)
Q Consensus 613 ~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g~~p~~ 692 (1109)
++.+|..+.+++.|+ .|+|++|.+++.+|. +..+++|++|||++|+++|.+|..+..+++|++|+|++|+++|.+|..
T Consensus 210 ~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQ-KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EECCGGGCCTTSCCS-EEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred cCcCCHHHhcCCCCC-EEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 666666666666665 366777777666665 788899999999999999999999999999999999999999999999
Q ss_pred cccccccCCcccCCCCcccc-CCCc
Q 001274 693 TVFRRIDSSNFAGNRGLCML-GSDC 716 (1109)
Q Consensus 693 ~~~~~~~~~~~~~n~~~c~~-~~~c 716 (1109)
..++++....+.||+.+||. .+.|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred ccccccChHHhcCCCCccCCCCCCC
Confidence 88999999999999999985 4455
No 283
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.4e-36 Score=335.77 Aligned_cols=248 Identities=19% Similarity=0.302 Sum_probs=193.2
Q ss_pred HHhcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCc----chhHHHHHHHHHhccC----CCCceeeEEEEE
Q 001274 799 EATGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGA----TADNSFLAEISTLGKI----RHRNIVKLYGFC 869 (1109)
Q Consensus 799 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l----~h~niv~l~~~~ 869 (1109)
...++|++.+.||+|+||.||+|++. +++.||||++....... .....+.+|+.+++++ +|+||+++++++
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~ 107 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF 107 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence 34478999999999999999999864 68999999997543221 1234466788888888 899999999999
Q ss_pred EeCCceEEEEEe-ccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeC-CCCceEE
Q 001274 870 YHQDSNLLLYEY-MENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLD-EEFQAHV 947 (1109)
Q Consensus 870 ~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~-~~~~~kl 947 (1109)
...+..++|||| +++++|.+++..... +++..+..++.||+.||+||| +.+|+||||||+||+++ .++.+||
T Consensus 108 ~~~~~~~~v~e~~~~~~~L~~~l~~~~~---~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl 181 (312)
T 2iwi_A 108 ETQEGFMLVLERPLPAQDLFDYITEKGP---LGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAKL 181 (312)
T ss_dssp -----CEEEEECCSSEEEHHHHHHHHCS---CCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGEEEETTTTEEEE
T ss_pred ecCCeEEEEEEecCCCCCHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhEEEeCCCCeEEE
Confidence 999999999999 789999999986543 899999999999999999999 67999999999999999 8899999
Q ss_pred eeccccccccCCCCCCccccccccceeccccccCCCCC-ccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhc
Q 001274 948 GDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVT-EKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHE 1026 (1109)
Q Consensus 948 ~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~ 1026 (1109)
+|||+++.... .......|+..|+|||++.+..+. .++||||+|+++|||++|+.||.... .... .
T Consensus 182 ~dfg~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~----~ 248 (312)
T 2iwi_A 182 IDFGSGALLHD---EPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ------EILE----A 248 (312)
T ss_dssp CCCSSCEECCS---SCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HHHH----T
T ss_pred EEcchhhhccc---CcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH------HHhh----h
Confidence 99999987652 223456789999999998877764 58999999999999999999997421 1111 1
Q ss_pred cCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Q 001274 1027 MVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMID 1079 (1109)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~ 1079 (1109)
.... .......+.+++.+||+.||++|||++|++++-+.
T Consensus 249 ~~~~--------------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~~~~ 287 (312)
T 2iwi_A 249 ELHF--------------PAHVSPDCCALIRRCLAPKPSSRPSLEEILLDPWM 287 (312)
T ss_dssp CCCC--------------CTTSCHHHHHHHHHHTCSSTTTSCCHHHHHHSTTT
T ss_pred ccCC--------------cccCCHHHHHHHHHHccCChhhCcCHHHHhcChhh
Confidence 1100 00112357789999999999999999999987654
No 284
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=6.6e-35 Score=343.16 Aligned_cols=254 Identities=24% Similarity=0.327 Sum_probs=188.1
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
+.|...+.||+|+||+||.+...+|+.||||++... ..+.+.+|+++++++ +||||+++++++...+..++|||
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~-----~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E 89 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID-----FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALE 89 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG-----GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH-----HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEe
Confidence 345556889999999998776667999999998732 345678999999876 89999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCC----CCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCC-------------C
Q 001274 881 YMENGSLGEQLHGNKQTC----LLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEE-------------F 943 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~----~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~-------------~ 943 (1109)
|+. |+|.+++....... ..++..+..++.||+.||+||| +.+|+||||||+||+++.+ +
T Consensus 90 ~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~ 165 (434)
T 2rio_A 90 LCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENL 165 (434)
T ss_dssp CCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSC
T ss_pred cCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCce
Confidence 995 69999997654311 1133456789999999999999 7799999999999999654 4
Q ss_pred ceEEeeccccccccCCCCC---CccccccccceeccccccC-------CCCCccchhHHHHHHHHHHHh-CCCCCCCccc
Q 001274 944 QAHVGDFGLAKLIDLPYSK---SMSAIAGSYGYIAPEYAYT-------MKVTEKCDIYSFGVVLLELIT-GKSPVQSLEL 1012 (1109)
Q Consensus 944 ~~kl~DFG~a~~~~~~~~~---~~~~~~gt~~y~aPE~~~~-------~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~ 1012 (1109)
.+||+|||+++........ ......||+.|+|||++.+ ..++.++||||+||++|||++ |+.||.....
T Consensus 166 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~ 245 (434)
T 2rio_A 166 RILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS 245 (434)
T ss_dssp EEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT
T ss_pred EEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh
Confidence 8999999999876532211 1234579999999999876 678999999999999999999 9999975321
Q ss_pred CCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 001274 1013 GGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMM 1077 (1109)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L 1077 (1109)
.....+. ........ ...........+.+++.+||+.||++|||+.|++++-
T Consensus 246 --~~~~i~~----~~~~~~~~-------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~hp 297 (434)
T 2rio_A 246 --RESNIIR----GIFSLDEM-------KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHP 297 (434)
T ss_dssp --HHHHHHH----TCCCCCCC-------TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTSG
T ss_pred --hHHHHhc----CCCCcccc-------cccccccchHHHHHHHHHHhhCChhhCCCHHHHHhCC
Confidence 1111111 11111110 0011233445788999999999999999999999754
No 285
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=3.5e-35 Score=353.64 Aligned_cols=273 Identities=25% Similarity=0.296 Sum_probs=203.9
Q ss_pred hcCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEe------CC
Q 001274 801 TGNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYH------QD 873 (1109)
Q Consensus 801 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~ 873 (1109)
.++|++.++||+|+||+||+|++. +|+.||||++... ......+.+.+|++++++++||||+++++++.. .+
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~-~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~ 91 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQE-LSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPND 91 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSC-CCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEeccc-CCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCC
Confidence 478999999999999999999864 6899999998643 234446779999999999999999999998765 56
Q ss_pred ceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCc---eEEeec
Q 001274 874 SNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQ---AHVGDF 950 (1109)
Q Consensus 874 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~---~kl~DF 950 (1109)
..++||||+++|+|.+++........+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+||
T Consensus 92 ~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~DF 168 (676)
T 3qa8_A 92 LPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDL 168 (676)
T ss_dssp SCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEECSC
T ss_pred eEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEccc
Confidence 77999999999999999987665445899999999999999999999 779999999999999987665 999999
Q ss_pred cccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhh------
Q 001274 951 GLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSI------ 1024 (1109)
Q Consensus 951 G~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~------ 1024 (1109)
|.++..... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||.... ....|.....
T Consensus 169 G~a~~~~~~--~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~---~~~~~~~~i~~~~~~~ 243 (676)
T 3qa8_A 169 GYAKELDQG--ELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNW---QPVQWHGKVREKSNEH 243 (676)
T ss_dssp CCCCBTTSC--CCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSC---HHHHSSTTCC------
T ss_pred ccccccccc--cccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCccc---chhhhhhhhhcccchh
Confidence 999876522 23345679999999999999999999999999999999999999997531 1111111000
Q ss_pred ---hccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHH-----HHHHHHhhh
Q 001274 1025 ---HEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREV-----IAMMIDARQ 1082 (1109)
Q Consensus 1025 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~ev-----l~~L~~~~~ 1082 (1109)
.........+.................+.+++.+||++||++|||++|+ .+.+..+..
T Consensus 244 ~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL~ 309 (676)
T 3qa8_A 244 IVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSILS 309 (676)
T ss_dssp CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHHC
T ss_pred hhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHHh
Confidence 0000000000111111111223345678899999999999999999884 445555443
No 286
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.2e-35 Score=341.10 Aligned_cols=250 Identities=23% Similarity=0.299 Sum_probs=187.4
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceEEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNLLLYE 880 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 880 (1109)
.+|...++||+|+||+||.....+++.||||++... ....+.+|+++++.+ +||||+++++++.+.+..++|||
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~-----~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E 98 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE-----CFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIE 98 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTT-----TEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHH-----HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEE
Confidence 468888999999999977655567999999998632 223466899999999 89999999999999999999999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC-----CCceEEeecccccc
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE-----EFQAHVGDFGLAKL 955 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~-----~~~~kl~DFG~a~~ 955 (1109)
|++ |+|.+++...... ..+..+..++.||+.||+||| +.+|+||||||+||+++. ...+||+|||+|+.
T Consensus 99 ~~~-g~L~~~l~~~~~~--~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~ 172 (432)
T 3p23_A 99 LCA-ATLQEYVEQKDFA--HLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKK 172 (432)
T ss_dssp CCS-EEHHHHHHSSSCC--CCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEEC
T ss_pred CCC-CCHHHHHHhcCCC--ccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEecccceee
Confidence 996 6999999865532 555667899999999999999 779999999999999943 33688999999987
Q ss_pred ccCCCC--CCccccccccceecccccc---CCCCCccchhHHHHHHHHHHHh-CCCCCCCcccCCcHHHHHHHhhhccCC
Q 001274 956 IDLPYS--KSMSAIAGSYGYIAPEYAY---TMKVTEKCDIYSFGVVLLELIT-GKSPVQSLELGGDLVTWVRRSIHEMVP 1029 (1109)
Q Consensus 956 ~~~~~~--~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGvll~ellt-g~~pf~~~~~~~~~~~~~~~~~~~~~~ 1029 (1109)
...... .......||+.|+|||++. +..++.++||||+||++|||++ |..||..... ........ ...
T Consensus 173 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~-----~~~~~~~~-~~~ 246 (432)
T 3p23_A 173 LAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ-----RQANILLG-ACS 246 (432)
T ss_dssp C------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT-----HHHHHHTT-CCC
T ss_pred ccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH-----HHHHHHhc-cCC
Confidence 642211 2234567999999999997 4567889999999999999999 9999864221 11111111 111
Q ss_pred CchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Q 001274 1030 TSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMM 1077 (1109)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L 1077 (1109)
.. ... ........+.+++.+||+.||++|||++|++++-
T Consensus 247 ~~-~~~--------~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~hp 285 (432)
T 3p23_A 247 LD-CLH--------PEKHEDVIARELIEKMIAMDPQKRPSAKHVLKHP 285 (432)
T ss_dssp CT-TSC--------TTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTST
T ss_pred cc-ccC--------ccccccHHHHHHHHHHHhCCHhhCCCHHHHHhCc
Confidence 10 000 0112234577899999999999999999999653
No 287
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=4.7e-35 Score=324.28 Aligned_cols=237 Identities=13% Similarity=0.083 Sum_probs=184.9
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccCCC-cchhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEG-ATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
++|++.+.||+|+||+||+|++. +++.||||++...... ....+.+.+|+.++++++||||+++++++...+..|+||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 67999999999999999999976 5899999999754332 233478999999999999999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||+++++|.+++... ....++.+++.|++.||+||| +.+|+||||||+||+++.++.+||+++|
T Consensus 111 e~~~g~~L~~~l~~~-----~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~~-------- 174 (286)
T 3uqc_A 111 EWIRGGSLQEVADTS-----PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPA-------- 174 (286)
T ss_dssp ECCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSCC--------
T ss_pred EecCCCCHHHHHhcC-----CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCEEEEecc--------
Confidence 999999999999542 355678899999999999999 7799999999999999999999998543
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcc
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLD 1039 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1109)
|++ +++.++|||||||++|||+||+.||.+........... .......+...
T Consensus 175 -------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~-~~~~~~~~~~~------- 226 (286)
T 3uqc_A 175 -------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAE-RDTAGQPIEPA------- 226 (286)
T ss_dssp -------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECC-BCTTSCBCCHH-------
T ss_pred -------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHH-HHhccCCCChh-------
Confidence 333 36889999999999999999999998643221100000 00000000000
Q ss_pred hhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhccCC
Q 001274 1040 LSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQSVSD 1086 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~ 1086 (1109)
.........+.+++.+||+.||++| |+.|+++.|+++......
T Consensus 227 ---~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~~ 269 (286)
T 3uqc_A 227 ---DIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVADR 269 (286)
T ss_dssp ---HHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC----
T ss_pred ---hcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccCCc
Confidence 0011122457899999999999999 999999999998766543
No 288
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.4e-33 Score=319.52 Aligned_cols=307 Identities=26% Similarity=0.367 Sum_probs=177.5
Q ss_pred ccccccccceeeeeccceecCchhhhccCccceEEeecccccCccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcc
Q 001274 260 IGNIQSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLC 339 (1109)
Q Consensus 260 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 339 (1109)
+..+++|++|++++|.+.. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. + .+..
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-~-~~~~----- 108 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-S-ALQN----- 108 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTT-----
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-h-HHcC-----
Confidence 3456667777777776653 33 36666666666666666664322 66666666666666666532 1 3444
Q ss_pred eEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEecccc
Q 001274 340 LLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNN 419 (1109)
Q Consensus 340 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~ 419 (1109)
+++|++|++++|++++. +. +..+++|+.|++++|.....++ .+..+++|++|++++|.
T Consensus 109 -------------------l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 109 -------------------LTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK 166 (347)
T ss_dssp -------------------CTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC
T ss_pred -------------------CCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC
Confidence 44444444444444422 11 4444445555554443332222 24445555555555555
Q ss_pred ccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCcc
Q 001274 420 LDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPE 499 (1109)
Q Consensus 420 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 499 (1109)
+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+
T Consensus 167 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 167 VKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred cCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 543322 4555555555555555554322 5555566666666666654433 5566666666666666665433
Q ss_pred ccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccc
Q 001274 500 IGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLE 579 (1109)
Q Consensus 500 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 579 (1109)
+..+++|++|++++|++++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++..|..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 66666777777777766653 3566667777777777777643 3466667777777777777766666677777777
Q ss_pred eecccccccccccCcccCCCcccceeeccCcccc
Q 001274 580 LLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFS 613 (1109)
Q Consensus 580 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 613 (1109)
.|++++|++++..| +..+++|++|++++|+++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77777777776555 666677777777777654
No 289
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.7e-33 Score=319.26 Aligned_cols=307 Identities=27% Similarity=0.400 Sum_probs=181.6
Q ss_pred hhccccccceecccccccCCCCCCccccccccceeeeeccceecCchhhhccCccceEEeecccccCccCcccCCCCcCc
Q 001274 236 LEKLRNLTDLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAV 315 (1109)
Q Consensus 236 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 315 (1109)
+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+ +.++++|++|++++|.+++ + ..+.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 456677777777777776 343 36677777777777777774333 7777777777777777764 2 3577777888
Q ss_pred EEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhcccccceEEccccc
Q 001274 316 EIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNH 395 (1109)
Q Consensus 316 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 395 (1109)
+|++++|++++..+ +..+++|+.|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 88888877775433 5556666666666664443333 25666666666666666653322 5555666666666665
Q ss_pred ccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCcc
Q 001274 396 LEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIE 475 (1109)
Q Consensus 396 l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 475 (1109)
+.+..+ +..+++|++|++++|.+.+..+ +..+++ |++|++++|++++..+
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~------------------------L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR------------------------LNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTT------------------------CCEEECCSSCCCCCGG--
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCc------------------------CCEEEccCCccCCCcc--
Confidence 553222 4445555555555555543322 444444 4444444444443322
Q ss_pred ccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCC
Q 001274 476 FYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQ 555 (1109)
Q Consensus 476 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 555 (1109)
+..+++|++|++++|.+++. +.+..+++|++|++++|++++. ..+..+++|+.|++++|++++..|..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 55555555666666655543 3455566666666666666643 3456666666666666666666666666666666
Q ss_pred eeecCCCcCccCCCcccccccccceecccccccc
Q 001274 556 RLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLT 589 (1109)
Q Consensus 556 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 589 (1109)
+|+|++|++++..| +..+++|+.|++++|+++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 66666666665444 666666666666666654
No 290
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=5e-34 Score=333.36 Aligned_cols=244 Identities=17% Similarity=0.145 Sum_probs=178.4
Q ss_pred cCCCCCceEecCCcceEEEEEec-CCcEEEEEEeeccC-CCcchhHHHHHHHHHhccCCC-Cce----------e-----
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA-NGEVIAVKKIKLRG-EGATADNSFLAEISTLGKIRH-RNI----------V----- 863 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h-~ni----------v----- 863 (1109)
..|...+.||+|+||+||+|++. +|+.||||+++... ......+.+.+|+.+++.++| ++. +
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 157 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence 45777889999999999999954 79999999987432 223346779999999999987 211 1
Q ss_pred ------eEEEEEEe-----CCceEEEEEeccCCCHHHHhccC----CCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeE
Q 001274 864 ------KLYGFCYH-----QDSNLLLYEYMENGSLGEQLHGN----KQTCLLDWDARYRIALGAAEGLCYLHYDCRPHII 928 (1109)
Q Consensus 864 ------~l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~----~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iv 928 (1109)
.+..++.. ....+++|+++ +++|.+++... .....+++..+..++.||++||+||| +.+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ii 233 (413)
T 3dzo_A 158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLV 233 (413)
T ss_dssp ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcc
Confidence 11111111 12346677765 68999988421 11224788899999999999999999 77999
Q ss_pred ecCCCCCceeeCCCCceEEeeccccccccCCCCCCccccccccceeccccc----------cCCCCCccchhHHHHHHHH
Q 001274 929 HRDIKSNNILLDEEFQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYA----------YTMKVTEKCDIYSFGVVLL 998 (1109)
Q Consensus 929 H~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~DvwSlGvll~ 998 (1109)
||||||+|||++.++.+||+|||+++..... ....+| +.|+|||++ .+..++.++|||||||++|
T Consensus 234 HrDiKp~NILl~~~~~~kL~DFG~a~~~~~~----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~ 308 (413)
T 3dzo_A 234 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIY 308 (413)
T ss_dssp CSCCCGGGEEECTTCCEEECCGGGCEETTEE----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHH
T ss_pred cCCcccceEEEecCCeEEEEeccceeecCCc----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHH
Confidence 9999999999999999999999999865422 344567 999999999 5666889999999999999
Q ss_pred HHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 001274 999 ELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAM 1076 (1109)
Q Consensus 999 elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~ 1076 (1109)
||++|+.||........ ....+... .. ....+.+++.+||+.||++||++.+++++
T Consensus 309 elltg~~Pf~~~~~~~~--------------~~~~~~~~----~~----~~~~~~~li~~~l~~dP~~Rpt~~~~l~~ 364 (413)
T 3dzo_A 309 WIWCADLPNTDDAALGG--------------SEWIFRSC----KN----IPQPVRALLEGFLRYPKEDRLLPLQAMET 364 (413)
T ss_dssp HHHHSSCCCCTTGGGSC--------------SGGGGSSC----CC----CCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred HHHHCCCCCCCcchhhh--------------HHHHHhhc----cc----CCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence 99999999975431110 01111100 01 12457899999999999999998777544
No 291
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=1.6e-33 Score=314.86 Aligned_cols=238 Identities=20% Similarity=0.261 Sum_probs=182.8
Q ss_pred cCCCCC-ceEecCCcceEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHh-ccCCCCceeeEEEEEEe----CCc
Q 001274 802 GNFSEG-AVIGRGACGTVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTL-GKIRHRNIVKLYGFCYH----QDS 874 (1109)
Q Consensus 802 ~~~~~~-~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~----~~~ 874 (1109)
++|.+. +.||+|+||+||+|++. +++.||+|+++ ....+.+|++++ +..+||||+++++++.. ...
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~-------~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 89 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQ-------DCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKC 89 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE-------CSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEec-------ccHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCce
Confidence 466666 78999999999999874 68999999996 234677898887 56699999999999987 667
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCC---CCceEEeecc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDE---EFQAHVGDFG 951 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~---~~~~kl~DFG 951 (1109)
.++||||+++|+|.+++...... .+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||
T Consensus 90 ~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg 165 (299)
T 3m2w_A 90 LLIVMECLDGGELFSRIQDRGDQ-AFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFG 165 (299)
T ss_dssp EEEEECCCCSCBHHHHHHHCTTC-CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCT
T ss_pred EEEEEeecCCCcHHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEeccc
Confidence 89999999999999999875432 3899999999999999999999 779999999999999998 7899999999
Q ss_pred ccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCc
Q 001274 952 LAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTS 1031 (1109)
Q Consensus 952 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1109)
++.... +..++.++||||+||++|||++|+.||........ ........
T Consensus 166 ~a~~~~-----------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~-----~~~~~~~~--- 214 (299)
T 3m2w_A 166 FAKETT-----------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI-----SPGMKTRI--- 214 (299)
T ss_dssp TCEECT-----------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC------------CCSCCSS---
T ss_pred cccccc-----------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh-----hHHHHHHH---
Confidence 997533 23567899999999999999999999975331100 00000000
Q ss_pred hhhhhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHhhhc
Q 001274 1032 ELFDKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPTMREVIAMMIDARQS 1083 (1109)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 1083 (1109)
..................+.+++.+||+.||++|||+.|++++-+.....
T Consensus 215 --~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp~~~~~~ 264 (299)
T 3m2w_A 215 --RMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST 264 (299)
T ss_dssp --CTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTGG
T ss_pred --hhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcChhhcccc
Confidence 00000000000011234678999999999999999999999987765443
No 292
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.4e-33 Score=349.00 Aligned_cols=240 Identities=25% Similarity=0.335 Sum_probs=192.8
Q ss_pred cCCCCCceEecCCcceEEEEEec--CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEeCCc-----
Q 001274 802 GNFSEGAVIGRGACGTVYKATLA--NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYHQDS----- 874 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 874 (1109)
++|++.+.||+|+||+||+|++. +++.||||++... ........+.+|++++++++||||+++++++...+.
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHS-GDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSS-CCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCcc-CCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 68999999999999999999975 5899999998643 223445678899999999999999999999988766
Q ss_pred eEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 875 NLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 875 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
.|+||||+++++|.+++.. .+++.++..++.||+.||.||| +.+||||||||+||+++.+ .+||+|||+++
T Consensus 159 ~~lv~E~~~g~~L~~~~~~-----~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG~a~ 229 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ-----KLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVS 229 (681)
T ss_dssp EEEEEECCCCEECC----C-----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCTTCE
T ss_pred eEEEEEeCCCCcHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEecccch
Confidence 6999999999999987754 2899999999999999999999 7799999999999999986 89999999998
Q ss_pred cccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhh
Q 001274 955 LIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELF 1034 (1109)
Q Consensus 955 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1109)
..... ....||+.|+|||++.+.. +.++|||||||++|||++|..||.+.... ..+...
T Consensus 230 ~~~~~-----~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~-------------~~~~~~-- 288 (681)
T 2pzi_A 230 RINSF-----GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVD-------------GLPEDD-- 288 (681)
T ss_dssp ETTCC-----SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECS-------------SCCTTC--
T ss_pred hcccC-----CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccccc-------------cccccc--
Confidence 76422 4457999999999987654 89999999999999999999887643211 000000
Q ss_pred hhhcchhhcccHHHHHHHHHHHHhccCCCCCCCCC-HHHHHHHHHHhh
Q 001274 1035 DKRLDLSAKRTVEEMTLFLKIALFCSSTSPLNRPT-MREVIAMMIDAR 1081 (1109)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPt-~~evl~~L~~~~ 1081 (1109)
........+.+++.+||+.||++||+ ++++.+.+....
T Consensus 289 ---------~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~ 327 (681)
T 2pzi_A 289 ---------PVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVL 327 (681)
T ss_dssp ---------HHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred ---------cccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHH
Confidence 01112245789999999999999996 555555565543
No 293
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=6.9e-32 Score=306.42 Aligned_cols=288 Identities=23% Similarity=0.300 Sum_probs=183.1
Q ss_pred cCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhcccccceEEcc
Q 001274 313 SAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLF 392 (1109)
Q Consensus 313 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 392 (1109)
+++.+++++|.++ .+|..+ .++|+.|++++|.+.+..|..|..+++|++|++++|++++..|..|.++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4455555555554 233322 2455555555555555555556666666666666666665556666666666666666
Q ss_pred cccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCcccc--CCCCCCCccccccceeecccccccc
Q 001274 393 DNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLS--GNIPPGLKTCRSLMQLMLGQNQLTG 470 (1109)
Q Consensus 393 ~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~ 470 (1109)
+|+++ .+|..+. ++|++|++++|++.+..+..|..+++|+.|++++|.++ +..+..+..+ +|++|++++|++++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 66665 3444333 56666777777666655556666777777777777664 2555666666 67777777777765
Q ss_pred cCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCC
Q 001274 471 SLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGN 550 (1109)
Q Consensus 471 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 550 (1109)
+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 343332 56777777777777766677777777777777777777766667777777777777777777 66667777
Q ss_pred CCCCCeeecCCCcCccCCCcccccc------cccceecccccccc--cccCcccCCCcccceeeccCcc
Q 001274 551 CVNLQRLDLSRNQFTGSAPEELGQL------VNLELLKLSDNKLT--GAIPSSLGGLARLTELQMGGNI 611 (1109)
Q Consensus 551 l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~l~~N~ 611 (1109)
+++|+.|++++|+|++..+..|... .+|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 7777777777777776555555443 45677777777766 5566677777777777777664
No 294
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.5e-31 Score=303.52 Aligned_cols=289 Identities=22% Similarity=0.293 Sum_probs=188.1
Q ss_pred cCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhcccccceEEcc
Q 001274 313 SAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLF 392 (1109)
Q Consensus 313 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 392 (1109)
+++.++++++.++. +|..+ .++++.|++++|.+++..+..|..+++|++|++++|++++..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 44455555555442 23222 2455555555555555555556666666666666666665556666666666666666
Q ss_pred cccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccC--CCCCCCccccccceeecccccccc
Q 001274 393 DNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSG--NIPPGLKTCRSLMQLMLGQNQLTG 470 (1109)
Q Consensus 393 ~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~ 470 (1109)
+|+++ .+|..+. ++|++|++++|++.+..+..|..+++|++|++++|.++. ..+..+..+++|++|++++|+++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 66666 3444333 567777777777776666677777777777777777753 556666777777777777777764
Q ss_pred cCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCC
Q 001274 471 SLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGN 550 (1109)
Q Consensus 471 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 550 (1109)
+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|+|++|+++ .+|.++..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 333332 67777777777777776777777777777777777777766667777777777777777777 66777777
Q ss_pred CCCCCeeecCCCcCccCCCcccccc------cccceeccccccccc--ccCcccCCCcccceeeccCcc
Q 001274 551 CVNLQRLDLSRNQFTGSAPEELGQL------VNLELLKLSDNKLTG--AIPSSLGGLARLTELQMGGNI 611 (1109)
Q Consensus 551 l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~ 611 (1109)
+++|++|+|++|+|++..+..|... ..|+.|++++|++.. ..|..|..+.+++.++|++|+
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 7777777777777776555555432 566777777777653 455667777777777777663
No 295
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=2.2e-31 Score=302.31 Aligned_cols=287 Identities=21% Similarity=0.319 Sum_probs=194.2
Q ss_pred cceEEeecccccCccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEccc
Q 001274 290 LKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSI 369 (1109)
Q Consensus 290 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 369 (1109)
++.++++++.++ .+|..+. +++++|+|++|.+++..|..+..+++|+.|++++|.+++..|..|..+++|++|++++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 444444444443 3333332 3445555555555544444455555555555555555555555555566666666666
Q ss_pred CcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEecccccc--CccchhhhcccccceeecCCccccCC
Q 001274 370 NNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLD--GSIPPHLCMYQKLIFLSLGSNRLSGN 447 (1109)
Q Consensus 370 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~L~~N~l~~~ 447 (1109)
|+++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|++++
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 6665 3333332 55666666666666544445666666666666666664 2455566666 77777777777775
Q ss_pred CCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhccc
Q 001274 448 IPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNL 527 (1109)
Q Consensus 448 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 527 (1109)
+|..+. ++|++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 344433 67888888888888887788888899999999999998887778888999999999999988 677788889
Q ss_pred ccccEEecccCcccccCCcCCCC------CCCCCeeecCCCcCc--cCCCcccccccccceecccccc
Q 001274 528 EHLVTFNISSNSLSGTIPHELGN------CVNLQRLDLSRNQFT--GSAPEELGQLVNLELLKLSDNK 587 (1109)
Q Consensus 528 ~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~ 587 (1109)
++|++|+|++|+|++..+..|.. ..+|+.|++++|.+. +..|..|..+++|+.|++++|+
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 99999999999998777776665 367899999999987 6778889999999999999885
No 296
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.1e-31 Score=299.81 Aligned_cols=289 Identities=20% Similarity=0.285 Sum_probs=192.9
Q ss_pred cccceeeeeccceecCchhhhccCccceEEeecccccCccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEecc
Q 001274 265 SLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLF 344 (1109)
Q Consensus 265 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 344 (1109)
+++.++++++.++ .+|..+. ++|+.|++++|.+++..+..+.++++|++|+|++|++++..|..
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------- 95 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA------------- 95 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-------------
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-------------
Confidence 5666666666655 3443332 34555555555555444445555555555555555555444444
Q ss_pred cccccCcccccccCCCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccC--
Q 001274 345 ENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDG-- 422 (1109)
Q Consensus 345 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~-- 422 (1109)
|..+++|++|++++|+++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 96 -----------~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 96 -----------FAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp -----------TTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred -----------hcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence 444555555555555554 2333222 445555555555554444445555555555555555532
Q ss_pred ccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccc
Q 001274 423 SIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGK 502 (1109)
Q Consensus 423 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 502 (1109)
..+..+..+++|++|++++|.++. +|..+. ++|++|++++|++++..|..|.++++|++|+|++|++++..+..+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 445566666777777777777764 343333 67888888888888888888888999999999999998887778888
Q ss_pred cccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCC------CCCCCeeecCCCcCcc--CCCccccc
Q 001274 503 LRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGN------CVNLQRLDLSRNQFTG--SAPEELGQ 574 (1109)
Q Consensus 503 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~l~~ 574 (1109)
+++|++|+|++|+++ .+|..+..+++|++|+|++|+|++..+..|.. .+.|+.|++++|.+.. ..|..|..
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 999999999999988 57888888999999999999998776666654 3788999999999863 56788999
Q ss_pred ccccceecccccc
Q 001274 575 LVNLELLKLSDNK 587 (1109)
Q Consensus 575 l~~L~~L~Ls~N~ 587 (1109)
+.+|+.++|++|+
T Consensus 318 ~~~l~~l~L~~N~ 330 (330)
T 1xku_A 318 VYVRAAVQLGNYK 330 (330)
T ss_dssp CCCGGGEEC----
T ss_pred ccceeEEEecccC
Confidence 9999999999985
No 297
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.97 E-value=1.8e-33 Score=320.18 Aligned_cols=246 Identities=15% Similarity=0.135 Sum_probs=186.1
Q ss_pred cCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCC------CcchhHHHHHHHHHhccCC---------CCceeeEE
Q 001274 802 GNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGE------GATADNSFLAEISTLGKIR---------HRNIVKLY 866 (1109)
Q Consensus 802 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~------~~~~~~~~~~E~~~l~~l~---------h~niv~l~ 866 (1109)
++|++.++||+|+||+||+|++ +|+.||||++..... .....+.+.+|+++++.++ ||||+++.
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~ 98 (336)
T 2vuw_A 20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN 98 (336)
T ss_dssp HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence 5788999999999999999998 689999999986532 1223367889999988885 88888888
Q ss_pred EEEE------------------------------eCCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHH
Q 001274 867 GFCY------------------------------HQDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGL 916 (1109)
Q Consensus 867 ~~~~------------------------------~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l 916 (1109)
+++. ..+..++||||+++|++.+.+.+. .+++..+..++.||+.||
T Consensus 99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~----~~~~~~~~~i~~qi~~aL 174 (336)
T 2vuw_A 99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTK----LSSLATAKSILHQLTASL 174 (336)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTT----CCCHHHHHHHHHHHHHHH
T ss_pred ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhc----CCCHHHHHHHHHHHHHHH
Confidence 8753 257789999999999777776442 389999999999999999
Q ss_pred HHHh-hcCCCCeEecCCCCCceeeCCCC--------------------ceEEeeccccccccCCCCCCccccccccceec
Q 001274 917 CYLH-YDCRPHIIHRDIKSNNILLDEEF--------------------QAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIA 975 (1109)
Q Consensus 917 ~~LH-~~~~~~ivH~Dlkp~NIll~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~a 975 (1109)
+||| +. +|+||||||+|||++.++ .+||+|||+|+.... ....||+.|+|
T Consensus 175 ~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~------~~~~gt~~y~a 245 (336)
T 2vuw_A 175 AVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD------GIVVFCDVSMD 245 (336)
T ss_dssp HHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET------TEEECCCCTTC
T ss_pred HHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC------CcEEEeecccC
Confidence 9999 44 899999999999999887 899999999987652 23479999999
Q ss_pred cccccCCCCCccchhHHHHHH-HHHHHhCCCCCCCcccCCcHHHHHHHhhhccCCCchhhhhhcchhhcccHHHHHHHHH
Q 001274 976 PEYAYTMKVTEKCDIYSFGVV-LLELITGKSPVQSLELGGDLVTWVRRSIHEMVPTSELFDKRLDLSAKRTVEEMTLFLK 1054 (1109)
Q Consensus 976 PE~~~~~~~~~~~DvwSlGvl-l~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1109)
||++.+.. +.++||||+|++ .+++++|..||....... ........... ..... ...........+.+
T Consensus 246 PE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~---~~~~~~~~~~~-~~~~~------~~~~~~~~s~~~~d 314 (336)
T 2vuw_A 246 EDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLH---YLTDKMLKQMT-FKTKC------NTPAMKQIKRKIQE 314 (336)
T ss_dssp SGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHH---HHHHHHHHTCC-CSSCC------CSHHHHHHHHHHHH
T ss_pred hhhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhh---HHHHhhhhhhc-cCccc------chhhhhhcCHHHHH
Confidence 99998776 899999998777 788889999985311000 01111110000 00000 00112334567899
Q ss_pred HHHhccCCCCCCCCCHHHHH-HHH
Q 001274 1055 IALFCSSTSPLNRPTMREVI-AMM 1077 (1109)
Q Consensus 1055 li~~cl~~dP~~RPt~~evl-~~L 1077 (1109)
++.+||+.| |++|++ +|-
T Consensus 315 li~~~L~~d-----sa~e~l~~Hp 333 (336)
T 2vuw_A 315 FHRTMLNFS-----SATDLLCQHS 333 (336)
T ss_dssp HHHHGGGSS-----SHHHHHHHCG
T ss_pred HHHHHhccC-----CHHHHHhcCC
Confidence 999999976 999998 653
No 298
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.4e-35 Score=350.14 Aligned_cols=385 Identities=19% Similarity=0.143 Sum_probs=175.8
Q ss_pred cccceeecccCccCCCCCc-cccCCCCCceEEccCCccccc----CCchhhccccceEEEccccccccccccccc-CcC-
Q 001274 96 PRLVEFNISMNFVTGSIPT-DLANCSSLEILDLCTNRLHGV----IPFQLFFINTLRKLYLCENYIFGEIPEEIG-NLT- 168 (1109)
Q Consensus 96 ~~L~~L~ls~n~~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~- 168 (1109)
++|++|+|++|.++..... .+..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+++..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4566777777666543322 255666667777776666542 334444556666666666666554333322 233
Q ss_pred ---CCceEEeecCCCCC----CCCcccccccccceeccccccccCCCCccccccccchhhhcccccccccCchhhhcccc
Q 001274 169 ---SLEELVIYSNNLTG----AIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRN 241 (1109)
Q Consensus 169 ---~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 241 (1109)
+|++|+|++|+++. .+|..+.++++|++|++++|.+++..+..+... .....++
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~-------------------l~~~~~~ 143 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG-------------------LLDPQCR 143 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH-------------------HTSTTCC
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH-------------------HhcCCCc
Confidence 46666666665553 234555555555555555555543222222110 0001233
Q ss_pred ccceecccccccCCC----CCCccccccccceeeeeccceecCchhhhc-----cCccceEEeecccccCc----cCccc
Q 001274 242 LTDLILWQNHLSGEI----PPTIGNIQSLELLALHENSFSGGLPKELGK-----LSRLKKLYVYTNELNGT----IPHEL 308 (1109)
Q Consensus 242 L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~-----l~~L~~L~l~~n~l~~~----~~~~l 308 (1109)
|++|+|++|++++.. +..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++..+
T Consensus 144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence 444555444444321 223333444444455444444333333321 33555555555555432 23444
Q ss_pred CCCCcCcEEEccCCcccCCC-----cccccCCCCcceEecccccccCc----ccccccCCCCccEEEcccCcccCCCCcc
Q 001274 309 GNCTSAVEIDLSENQLTGFI-----PRELGLIPNLCLLQLFENMLQGS----IPRELGQLTQLHKLDLSINNLTGTIPLE 379 (1109)
Q Consensus 309 ~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 379 (1109)
..+++|++|+|++|++++.. +..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 44555555555555544321 11111233444444444443332 2333444445555555555444322222
Q ss_pred hhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCc----cchhhhcccccceeecCCccccCCCCCCCcc-
Q 001274 380 FQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGS----IPPHLCMYQKLIFLSLGSNRLSGNIPPGLKT- 454 (1109)
Q Consensus 380 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~- 454 (1109)
+...- ....++|++|++++|.+++. ++..+..+++|++|+|++|.+++..+..+..
T Consensus 304 l~~~l-------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 304 LCETL-------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp HHHHH-------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred HHHHh-------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence 22210 00012344444444444332 2233334444444444444444332222211
Q ss_pred ----ccccceeecccccccc----cCCccccCCcccceeccccccccCCCCcccc-----ccccccEEEccCCccCC
Q 001274 455 ----CRSLMQLMLGQNQLTG----SLPIEFYNLQNLSALELYQNRFSGLIPPEIG-----KLRNLERLHLSENYFVG 518 (1109)
Q Consensus 455 ----l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~ 518 (1109)
.++|++|++++|++++ .+|..+..+++|++|+|++|++++.....+. ...+|+.|.+.++.+..
T Consensus 365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 3455666666665554 4555566666666777776666543111111 12356677776666554
No 299
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.1e-35 Score=348.59 Aligned_cols=383 Identities=21% Similarity=0.151 Sum_probs=214.5
Q ss_pred ccchhhhcccccccccCchh-hhccccccceecccccccC----CCCCCccccccccceeeeeccceecCchhhh-ccC-
Q 001274 216 EGLEVLGLAQNSLEGFLPSE-LEKLRNLTDLILWQNHLSG----EIPPTIGNIQSLELLALHENSFSGGLPKELG-KLS- 288 (1109)
Q Consensus 216 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~l~- 288 (1109)
++|++|+|++|+++...... +..+++|++|+|++|++++ .++..+..+++|++|+|++|.+++..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677777777776443333 5666777777777777663 2344455556666666666666554443333 233
Q ss_pred ---ccceEEeecccccC----ccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCC
Q 001274 289 ---RLKKLYVYTNELNG----TIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQ 361 (1109)
Q Consensus 289 ---~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 361 (1109)
+|++|++++|.++. .++..+..+++|++|+|++|.+++..+..+.. ......++
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-------------------~l~~~~~~ 143 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE-------------------GLLDPQCR 143 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH-------------------HHTSTTCC
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH-------------------HHhcCCCc
Confidence 46666666665552 33455555555555555555554332221111 00111334
Q ss_pred ccEEEcccCcccCCC----CcchhcccccceEEcccccccccCCCccc-----ccCcCcEEEeccccccCc----cchhh
Q 001274 362 LHKLDLSINNLTGTI----PLEFQNLTYLVDLQLFDNHLEGTIPPHIG-----VNSHLSVLDVSMNNLDGS----IPPHL 428 (1109)
Q Consensus 362 L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~~~~L~~L~Ls~N~l~~~----~~~~l 428 (1109)
|++|++++|++++.. +..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++.. ++..+
T Consensus 144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence 555555555555322 33344455555555555555433322222 134566666666666543 34555
Q ss_pred hcccccceeecCCccccCCC-----CCCCccccccceeeccccccccc----CCccccCCcccceeccccccccCCCCcc
Q 001274 429 CMYQKLIFLSLGSNRLSGNI-----PPGLKTCRSLMQLMLGQNQLTGS----LPIEFYNLQNLSALELYQNRFSGLIPPE 499 (1109)
Q Consensus 429 ~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 499 (1109)
..+++|+.|++++|.++... +..+..+++|++|++++|+++.. ++..+.++++|++|+|++|.+.+..+..
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 56666666666666655321 11222456667777777766643 4555666777777777777776443333
Q ss_pred cccc-----ccccEEEccCCccCCC----CChhhcccccccEEecccCcccccCCcCCCC-----CCCCCeeecCCCcCc
Q 001274 500 IGKL-----RNLERLHLSENYFVGY----IPSEVGNLEHLVTFNISSNSLSGTIPHELGN-----CVNLQRLDLSRNQFT 565 (1109)
Q Consensus 500 ~~~l-----~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~ 565 (1109)
+... ++|++|++++|.+++. ++..+..+++|++|+|++|++++..+..+.. .++|++|+|++|.++
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 3322 5777777777777654 3455666677777777777776544433332 567777888888777
Q ss_pred c----CCCcccccccccceecccccccccccCcccC-----CCcccceeeccCcccccccc
Q 001274 566 G----SAPEELGQLVNLELLKLSDNKLTGAIPSSLG-----GLARLTELQMGGNIFSGSIP 617 (1109)
Q Consensus 566 ~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~l~~N~l~~~~p 617 (1109)
+ .+|..+..+++|+.|+|++|++++.....+. ...+|+.|++.+|.+....+
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~ 444 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 444 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence 5 5677777777777778877777643211111 12345666666655554333
No 300
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=4.4e-33 Score=342.96 Aligned_cols=449 Identities=13% Similarity=0.063 Sum_probs=255.1
Q ss_pred CCccceeeecCCeEEEEeccCccccccccccccCccccceeecccCcc---CCCCCcccc------------CCCCCceE
Q 001274 61 PCNWIGVECTDFKVTSVDLHGLNLSGILSPRICDLPRLVEFNISMNFV---TGSIPTDLA------------NCSSLEIL 125 (1109)
Q Consensus 61 ~c~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~---~~~~p~~l~------------~l~~L~~L 125 (1109)
|++|.+|.+...+... +. +.....++..+..+++|++|+|+++.. .|.+|..++ .+++|++|
T Consensus 41 ck~W~~~~~~~~~~l~--~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L 117 (592)
T 3ogk_B 41 CRRWFKIDSETREHVT--MA-LCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSV 117 (592)
T ss_dssp CHHHHHHHHHHCCEEE--ES-CGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEE
T ss_pred hHHHHHhhhccccEEE--Ee-eccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeE
Confidence 4489999765433322 22 223334445566789999999987532 245554444 68889999
Q ss_pred EccCCcccccCCchhhcc--ccceEEEccccc-ccc-cccccccCcCCCceEEeecCCCCCC----CCccccccccccee
Q 001274 126 DLCTNRLHGVIPFQLFFI--NTLRKLYLCENY-IFG-EIPEEIGNLTSLEELVIYSNNLTGA----IPASISKLRQLRVI 197 (1109)
Q Consensus 126 ~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L 197 (1109)
+|++|.+++..+..+... ++|++|+|++|. ++. .++..+.++++|++|+|++|.+++. ++..+.++++|+.|
T Consensus 118 ~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L 197 (592)
T 3ogk_B 118 HFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197 (592)
T ss_dssp EEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEE
T ss_pred EeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEE
Confidence 999888887777777663 448888888876 221 2333345778888888888887765 33345667778888
Q ss_pred ccccccccC----CCCccccccccchhhhcccccccccCchhhhccccccceeccccccc---CCCCCCcccccccccee
Q 001274 198 RAGHNSLSG----PIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLS---GEIPPTIGNIQSLELLA 270 (1109)
Q Consensus 198 ~l~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~---~~~p~~l~~l~~L~~L~ 270 (1109)
++++|.+++ .++..+.++++|++|++++|.+.+ +|..+.++++|++|+++..... +..+..+..+++|+.|+
T Consensus 198 ~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ 276 (592)
T 3ogk_B 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276 (592)
T ss_dssp ECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEE
T ss_pred EeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccC
Confidence 888877762 333444566777777777776664 5566667777777777643222 22334455555555555
Q ss_pred eeeccceecCchhhhccCccceEEeecccccCccC-cccCCCCcCcEEEccCCcccCCCcccccCCCCcceEeccccccc
Q 001274 271 LHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIP-HELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQ 349 (1109)
Q Consensus 271 L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 349 (1109)
++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+. .
T Consensus 277 l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~-----------------------~ 331 (592)
T 3ogk_B 277 LSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIG-----------------------D 331 (592)
T ss_dssp ETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGH-----------------------H
T ss_pred ccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccC-----------------------H
Confidence 555422 2344455555555555555555443222 223445555555555 2222 1
Q ss_pred CcccccccCCCCccEEEcc-----------cCcccCC-CCcchhcccccceEEcccccccccCCCcccc-cCcCcEEEec
Q 001274 350 GSIPRELGQLTQLHKLDLS-----------INNLTGT-IPLEFQNLTYLVDLQLFDNHLEGTIPPHIGV-NSHLSVLDVS 416 (1109)
Q Consensus 350 ~~~p~~l~~l~~L~~L~Ls-----------~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~~L~~L~Ls 416 (1109)
+.++..+..+++|++|+++ .|.+++. ++..+..+++|+.|+++.|.+++..+..++. +++|+.|+++
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 2222223344555555555 2333322 1112334555555555555555444444433 5555555554
Q ss_pred ----cccccCc-----cchhhhcccccceeecCCc--cccCCCCCCCc-cccccceeecccccccc-cCCccccCCcccc
Q 001274 417 ----MNNLDGS-----IPPHLCMYQKLIFLSLGSN--RLSGNIPPGLK-TCRSLMQLMLGQNQLTG-SLPIEFYNLQNLS 483 (1109)
Q Consensus 417 ----~N~l~~~-----~~~~l~~l~~L~~L~L~~N--~l~~~~~~~~~-~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~ 483 (1109)
.|.+++. ++..+.++++|+.|+++.+ .+++.....+. .+++|++|++++|++++ .++..+.++++|+
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence 4455442 3333555666666666532 23332222222 25667777777777664 2344456778888
Q ss_pred eeccccccccCC-CCccccccccccEEEccCCccCCCCChhh-cccccccEEecccC
Q 001274 484 ALELYQNRFSGL-IPPEIGKLRNLERLHLSENYFVGYIPSEV-GNLEHLVTFNISSN 538 (1109)
Q Consensus 484 ~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N 538 (1109)
+|+|++|.+++. ++..+..+++|++|+|++|++++.....+ ..++.+....+..+
T Consensus 492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 888888887643 23344567888888888888775433333 34566666555544
No 301
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.9e-30 Score=293.83 Aligned_cols=278 Identities=22% Similarity=0.189 Sum_probs=194.9
Q ss_pred EEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccc
Q 001274 389 LQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQL 468 (1109)
Q Consensus 389 L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 468 (1109)
.++++|.++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++
T Consensus 36 c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 444444444 3333332 3566666666666655555666666666666666666666666677777777777777777
Q ss_pred cccCCccccCCcccceeccccccccCCCC-ccccccccccEEEccCC-ccCCCCChhhcccccccEEecccCcccccCCc
Q 001274 469 TGSLPIEFYNLQNLSALELYQNRFSGLIP-PEIGKLRNLERLHLSEN-YFVGYIPSEVGNLEHLVTFNISSNSLSGTIPH 546 (1109)
Q Consensus 469 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 546 (1109)
++..+..|.++++|++|+|++|+++++.+ ..|..+++|++|++++| .+.+..+..|.++++|++|++++|++++..|.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 76555557778888888888888876544 46778888888888887 46666677788888888888888888877788
Q ss_pred CCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccC---CCcccceeeccCcccccccccccccc
Q 001274 547 ELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLG---GLARLTELQMGGNIFSGSIPVALGQL 623 (1109)
Q Consensus 547 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~l~~N~l~~~~p~~~~~l 623 (1109)
.+.++++|++|++++|+++...+..+..+++|+.|++++|++++..+..+. ....++.+++++|.++
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~---------- 262 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT---------- 262 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC----------
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc----------
Confidence 888888888888888888643333345578888888888888866554433 2344555555554433
Q ss_pred chhhhhhccCCccccccccccccCccccceeecCCCccccCCchh-hhccccceEEEccCcccccccCC
Q 001274 624 TALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIPAS-MGEQMSLLVCNLSNNNLVGTVPN 691 (1109)
Q Consensus 624 ~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~-~~~l~~L~~l~ls~N~l~g~~p~ 691 (1109)
+|.+. .+|..++.+++|+.|||++|+++ .+|.. |..+++|++|+|++|++.|.+|.
T Consensus 263 ----------~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 263 ----------DESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp ----------HHHHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ----------Ccchh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 23333 46778889999999999999998 67766 58899999999999999998874
No 302
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.7e-31 Score=328.73 Aligned_cols=424 Identities=14% Similarity=0.051 Sum_probs=212.4
Q ss_pred hhhhccccccceecccccc---cCCCCCCcc------------ccccccceeeeeccceecCchhhhcc--CccceEEee
Q 001274 234 SELEKLRNLTDLILWQNHL---SGEIPPTIG------------NIQSLELLALHENSFSGGLPKELGKL--SRLKKLYVY 296 (1109)
Q Consensus 234 ~~l~~l~~L~~L~L~~N~l---~~~~p~~l~------------~l~~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~l~ 296 (1109)
..+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..++.+ .+|++|+++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 3445566666666655321 123333333 55677777777777766666666653 347777777
Q ss_pred ccc-ccC-ccCcccCCCCcCcEEEccCCcccCC----CcccccCCCCcceEeccccccc----CcccccccCCCCccEEE
Q 001274 297 TNE-LNG-TIPHELGNCTSAVEIDLSENQLTGF----IPRELGLIPNLCLLQLFENMLQ----GSIPRELGQLTQLHKLD 366 (1109)
Q Consensus 297 ~n~-l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~ 366 (1109)
+|. ++. .++....++++|++|+|++|.+++. ++..+..+++|+.|++++|.++ +.++..+.++++|++|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~ 226 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence 665 221 1222234567777777777776654 2233445566666666666665 23344445667777777
Q ss_pred cccCcccCCCCcchhcccccceEEccccccc---ccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCcc
Q 001274 367 LSINNLTGTIPLEFQNLTYLVDLQLFDNHLE---GTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNR 443 (1109)
Q Consensus 367 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~ 443 (1109)
+++|.+.+ ++..+.++++|++|+++.+... +..+..+..+++|+.|+++++.. ..+|..+..+++|++|+|++|.
T Consensus 227 L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 227 VGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCC
T ss_pred ccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCc
Confidence 77777764 5566777777777777653222 22334445556666666665422 2344445555555555555555
Q ss_pred ccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEcc-----------
Q 001274 444 LSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLS----------- 512 (1109)
Q Consensus 444 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls----------- 512 (1109)
+++... +..+.++++|++|+++++-..+.++..+..+++|++|+++
T Consensus 305 l~~~~~-----------------------~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 305 LETEDH-----------------------CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp CCHHHH-----------------------HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred CCHHHH-----------------------HHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 432211 0113344444444444221111122222334445555555
Q ss_pred CCccCCC-CChhhcccccccEEecccCcccccCCcCCCC-CCCCCeeecC----CCcCccC-----CCccccccccccee
Q 001274 513 ENYFVGY-IPSEVGNLEHLVTFNISSNSLSGTIPHELGN-CVNLQRLDLS----RNQFTGS-----APEELGQLVNLELL 581 (1109)
Q Consensus 513 ~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~~~-----~p~~l~~l~~L~~L 581 (1109)
.|.+++. ++..+..+++|++|+++.|++++..+..++. +++|+.|+++ .|.+++. ++..+.++++|+.|
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence 2333321 1111233455555555555555443333333 4555555553 4444432 22234445555555
Q ss_pred ccccc--ccccccCcccC-CCcccceeeccCccccc-cccccccccchhhhhhccCCcccccc-ccccccCccccceeec
Q 001274 582 KLSDN--KLTGAIPSSLG-GLARLTELQMGGNIFSG-SIPVALGQLTALQIALNISHNNLSGV-IPYELGNLQMLEALYL 656 (1109)
Q Consensus 582 ~Ls~N--~l~~~~p~~~~-~l~~L~~L~l~~N~l~~-~~p~~~~~l~~l~~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L 656 (1109)
+|++| .+++..+..+. .+++|++|++++|.+++ .++..+..++.|+ .|+|++|.+++. ++..+..+++|+.|+|
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ-KLEMRGCCFSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC-EEEEESCCCBHHHHHHHHHHCSSCCEEEE
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC-eeeccCCCCcHHHHHHHHHhcCccCeeEC
Confidence 55432 23433333332 24555555555555543 2233333344443 245555554433 3333456777888888
Q ss_pred CCCccccCCchhh-hccccceEEEccCc
Q 001274 657 DDNQLIGEIPASM-GEQMSLLVCNLSNN 683 (1109)
Q Consensus 657 s~N~l~~~ip~~~-~~l~~L~~l~ls~N 683 (1109)
++|++++.--..+ ..++.+....+..+
T Consensus 521 s~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 521 QGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp ESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 8888775533333 24555555544443
No 303
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.3e-29 Score=288.31 Aligned_cols=257 Identities=20% Similarity=0.196 Sum_probs=197.8
Q ss_pred CccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecC
Q 001274 361 QLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLG 440 (1109)
Q Consensus 361 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 440 (1109)
+|++|++++|++++..+..|.++++|+.|++++|++++..|..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 56777777777765555567777777777777777776666677777777778888887776666667888888888888
Q ss_pred CccccCCCC-CCCccccccceeecccc-cccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCC
Q 001274 441 SNRLSGNIP-PGLKTCRSLMQLMLGQN-QLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVG 518 (1109)
Q Consensus 441 ~N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 518 (1109)
+|++++..+ ..+..+++|++|++++| .++...+..|.++++|++|++++|++++..|..+..+++|++|++++|+++.
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 888886544 47788888888888888 4776677788888899999999999888888888889999999999998875
Q ss_pred CCChhhcccccccEEecccCcccccCCcCCC---CCCCCCeeecCCCcCcc----CCCcccccccccceecccccccccc
Q 001274 519 YIPSEVGNLEHLVTFNISSNSLSGTIPHELG---NCVNLQRLDLSRNQFTG----SAPEELGQLVNLELLKLSDNKLTGA 591 (1109)
Q Consensus 519 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~ 591 (1109)
..+..+..+++|++|+|++|++++..+..+. ....++.++|++|.+++ .+|..+..+++|+.|+|++|+++..
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i 292 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc
Confidence 4444556688899999999998876554443 35667888888888765 3677888899999999999999855
Q ss_pred cCcccCCCcccceeeccCcccccccc
Q 001274 592 IPSSLGGLARLTELQMGGNIFSGSIP 617 (1109)
Q Consensus 592 ~p~~~~~l~~L~~L~l~~N~l~~~~p 617 (1109)
.+..|..+++|++|++++|++.+..|
T Consensus 293 ~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 293 PDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 44456889999999999998887654
No 304
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=7.1e-29 Score=278.19 Aligned_cols=249 Identities=21% Similarity=0.238 Sum_probs=172.1
Q ss_pred EEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCc--cchhhhcccccceeecCC
Q 001274 364 KLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGS--IPPHLCMYQKLIFLSLGS 441 (1109)
Q Consensus 364 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~--~~~~l~~l~~L~~L~L~~ 441 (1109)
.++++++.++ .+|..+. ++|++|+|++|+++...+..|..+++|++|+|++|++... .+..+..+++|++|+|++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4555555555 3333222 3555555555555533333455556666666666665522 245555666666666666
Q ss_pred ccccCCCCCCCccccccceeecccccccccCC-ccccCCcccceeccccccccCCCCccccccccccEEEccCCccCC-C
Q 001274 442 NRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLP-IEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVG-Y 519 (1109)
Q Consensus 442 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~ 519 (1109)
|.++. +|..+..+++|++|++++|++++..+ ..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++ .
T Consensus 88 n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Ccccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 66663 34456666677777777777765544 467777777777777777777777777777888888888887775 5
Q ss_pred CChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCC
Q 001274 520 IPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGL 599 (1109)
Q Consensus 520 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 599 (1109)
.|..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 67777788888888888888887777788888888888888888887666677888888888888888888888888877
Q ss_pred c-ccceeeccCccccccc
Q 001274 600 A-RLTELQMGGNIFSGSI 616 (1109)
Q Consensus 600 ~-~L~~L~l~~N~l~~~~ 616 (1109)
+ +|++|++++|++++..
T Consensus 247 ~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CTTCCEEECTTCCEECSG
T ss_pred hccCCEEEccCCCeeccc
Confidence 4 7888888888887653
No 305
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1e-28 Score=276.97 Aligned_cols=230 Identities=27% Similarity=0.254 Sum_probs=123.0
Q ss_pred CCcceEecccccccCcccccccCCCCccEEEcccCcccCC--CCcchhcccccceEEcccccccccCCCcccccCcCcEE
Q 001274 336 PNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGT--IPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVL 413 (1109)
Q Consensus 336 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L 413 (1109)
++|+.|++++|.++...+..|..+++|++|++++|+++.. .+..+..+++|++|+|++|.+. .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 3444444444444433333455555666666666655521 2344455555555555555555 234445555555555
Q ss_pred EeccccccCccc-hhhhcccccceeecCCccccCCCCCCCccccccceeecccccccc-cCCccccCCcccceecccccc
Q 001274 414 DVSMNNLDGSIP-PHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTG-SLPIEFYNLQNLSALELYQNR 491 (1109)
Q Consensus 414 ~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~ 491 (1109)
++++|++.+..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++ ..|..|.++++|++|+|++|+
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 555555554433 345555555555555555555555555555555555555555544 345555555555555555555
Q ss_pred ccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCC-CCCeeecCCCcCcc
Q 001274 492 FSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCV-NLQRLDLSRNQFTG 566 (1109)
Q Consensus 492 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~ 566 (1109)
+++..|..|..+++|++|+|++|++++..+..+..+++|++|+|++|++++..|..+..++ +|++|+|++|.+++
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 5555555555555555555555555554444555555555555555555555555555552 55555555555543
No 306
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.4e-28 Score=277.85 Aligned_cols=288 Identities=19% Similarity=0.251 Sum_probs=229.7
Q ss_pred HHhcCCCCCCCCCCCCCC-CCCCccceeeecCC--eEEEEeccCccccccccccc--cCccccceeecccCccCCCCCcc
Q 001274 41 KASLIDPSNNLESWNSSD-MTPCNWIGVECTDF--KVTSVDLHGLNLSGILSPRI--CDLPRLVEFNISMNFVTGSIPTD 115 (1109)
Q Consensus 41 k~~~~~~~~~~~~W~~~~-~~~c~w~gv~C~~~--~v~~l~l~~~~l~g~~~~~~--~~l~~L~~L~ls~n~~~~~~p~~ 115 (1109)
|+++.|+...+..|+..- .|||.|.++-|+.. ........+..+. .++..+ ...++++.|+|++|.++ .+|..
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~-~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHH-HHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchh-hhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 445567666788897521 37899999888321 0000111111111 011111 23477888888888887 77888
Q ss_pred ccCCCCCceEEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccc
Q 001274 116 LANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLR 195 (1109)
Q Consensus 116 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 195 (1109)
++++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..++++++|++|+|++|++.+.+|..++..
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~---- 173 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST---- 173 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE----
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc----
Confidence 888888888888888887 77777888888888888888877 677778888888888888877777777766541
Q ss_pred eeccccccccCCCCccccccccchhhhcccccccccCchhhhccccccceecccccccCCCCCCccccccccceeeeecc
Q 001274 196 VIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLSGEIPPTIGNIQSLELLALHENS 275 (1109)
Q Consensus 196 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 275 (1109)
..+..|+++++|++|+|++|+++ .+|..+.++++|++|+|++|+++ .+|..++.+++|++|+|++|+
T Consensus 174 -----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 174 -----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp -----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCT
T ss_pred -----------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCc
Confidence 22345677999999999999999 78999999999999999999999 577789999999999999999
Q ss_pred ceecCchhhhccCccceEEeecccccCccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEeccccccc
Q 001274 276 FSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQ 349 (1109)
Q Consensus 276 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 349 (1109)
+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|+|++|++.+.+|..++.+++|+.+.+..+.+.
T Consensus 241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887665
No 307
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.3e-28 Score=270.93 Aligned_cols=236 Identities=22% Similarity=0.200 Sum_probs=142.8
Q ss_pred cCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeeccccc-ccccCCccccCCcccceecc
Q 001274 409 HLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQ-LTGSLPIEFYNLQNLSALEL 487 (1109)
Q Consensus 409 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L 487 (1109)
+|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|+ ++...|..|.++++|++|+|
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 34444444444444433444444444445555554444445555555555555555554 55444556666666666666
Q ss_pred ccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccC
Q 001274 488 YQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGS 567 (1109)
Q Consensus 488 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 567 (1109)
++|.+++..|..|..+++|++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 66666666666666667777777777777665556666777777777777777755555677777777777777777766
Q ss_pred CCcccccccccceecccccccccccCcccCCCcccceeeccCccccccccccccccchhhhhhccCCcccccccccccc
Q 001274 568 APEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELG 646 (1109)
Q Consensus 568 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~ 646 (1109)
.|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..+.. .-...+ ..+..+.|.+.+..|..+.
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l-~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWL-QKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHH-HHCCSEECCCBEEESGGGT
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHH-HhcccccCccccCCchHhC
Confidence 6777777777777777777777666666777777777777777776544321 001111 1244555555555555543
No 308
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.8e-28 Score=269.26 Aligned_cols=233 Identities=24% Similarity=0.263 Sum_probs=133.3
Q ss_pred ccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCc-cCCCCChhhcccccccEEec
Q 001274 457 SLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENY-FVGYIPSEVGNLEHLVTFNI 535 (1109)
Q Consensus 457 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L 535 (1109)
+|++|++++|++++..+..|.++++|++|+|++|.++++.|..|..+++|++|++++|+ +.+..|..+..+++|++|+|
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 45555555555554444455555555555555555555555555555555555555554 44444555555555555555
Q ss_pred ccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCcccccc
Q 001274 536 SSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGS 615 (1109)
Q Consensus 536 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 615 (1109)
++|++++..|..+.++++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|.++++|++|++++|.+++.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 55555555555555555555555555555544444455555555555555555554444555555666555555555555
Q ss_pred ccccccccchhhhhhccCCccccccccccccCccccceeecCCCccccCCchhhhccccceEEEccCcccccccCC
Q 001274 616 IPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIPASMGEQMSLLVCNLSNNNLVGTVPN 691 (1109)
Q Consensus 616 ~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g~~p~ 691 (1109)
.|..+.+++.|+ .|++++|++++..+..+..+++|+.|+|++|++++..+.. .-...++.+..+.|.+.|..|.
T Consensus 193 ~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 193 HPHAFRDLGRLM-TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp CTTTTTTCTTCC-EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred CHhHccCccccc-EeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence 555555555554 3555566666555566777778888888888887655432 1123345555677777777775
No 309
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2e-29 Score=283.10 Aligned_cols=247 Identities=19% Similarity=0.205 Sum_probs=156.0
Q ss_pred ccccceeecCCccccCCCCCCCccccccceeeccccccc-ccCCcccc-------CCcccceeccccccccCCCCccc--
Q 001274 431 YQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLT-GSLPIEFY-------NLQNLSALELYQNRFSGLIPPEI-- 500 (1109)
Q Consensus 431 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~-- 500 (1109)
.++|+.|++++|.+ .+|..+... |+.|+|++|+++ ..+|..+. ++++|++|+|++|++++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 33444444444444 233322222 455555555552 23333333 56666677777777666666654
Q ss_pred cccccccEEEccCCccCCCCChhhccc-----ccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccC--CCccc-
Q 001274 501 GKLRNLERLHLSENYFVGYIPSEVGNL-----EHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGS--APEEL- 572 (1109)
Q Consensus 501 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~l- 572 (1109)
..+++|++|+|++|++++. |..++.+ ++|++|+|++|++++..|..|+.+++|++|+|++|++.+. .|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 6666777777777777665 6666665 6677777777777666666677777777777777766543 23333
Q ss_pred -ccccccceeccccccccc---ccCcccCCCcccceeeccCcccccccc-ccccccchhhhhhccCCccccccccccccC
Q 001274 573 -GQLVNLELLKLSDNKLTG---AIPSSLGGLARLTELQMGGNIFSGSIP-VALGQLTALQIALNISHNNLSGVIPYELGN 647 (1109)
Q Consensus 573 -~~l~~L~~L~Ls~N~l~~---~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~ 647 (1109)
..+++|+.|+|++|++++ .....+.++++|++|++++|.+++.+| ..+..++.|+ .|+|++|+|+ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~-~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN-SLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC-EEECTTSCCS-SCCSSCC-
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC-EEECCCCccC-hhhhhcc-
Confidence 666777777777777662 122334566677777777777776664 3344456665 4777777777 5666665
Q ss_pred ccccceeecCCCccccCCchhhhccccceEEEccCcccccc
Q 001274 648 LQMLEALYLDDNQLIGEIPASMGEQMSLLVCNLSNNNLVGT 688 (1109)
Q Consensus 648 l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g~ 688 (1109)
++|++|||++|+|++. |. +..+++|++|+|++|++++.
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 7889999999998865 66 88888999999999988763
No 310
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=6.6e-28 Score=285.80 Aligned_cols=252 Identities=21% Similarity=0.251 Sum_probs=145.1
Q ss_pred cCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccc
Q 001274 409 HLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELY 488 (1109)
Q Consensus 409 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 488 (1109)
....++.+++.++. +|..+. +++++|+|++|+|++..+..|..+++|++|+|++|+++++.+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34556666666653 333222 456666666666665555566666666666666666665555556666666666666
Q ss_pred cccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEeccc-CcccccCCcCCCCCCCCCeeecCCCcCccC
Q 001274 489 QNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISS-NSLSGTIPHELGNCVNLQRLDLSRNQFTGS 567 (1109)
Q Consensus 489 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 567 (1109)
+|+++++.+..|..+++|++|+|++|+++++.+..|.++++|+.|+|++ |.+....+..|.++++|++|+|++|++++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 6666555555555566666666666665554445555555666666655 33333333345555555555555555553
Q ss_pred CCcccccccccceecccccccccccCcccCCCcccceeeccCccccccccccccccchhhhhhccCCccccccccccccC
Q 001274 568 APEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGN 647 (1109)
Q Consensus 568 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~ 647 (1109)
+| .+..+++|+.|+|++|++++..|..|.++++|+.|+ |++|++++..|..|..
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-------------------------L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW-------------------------VMNSQVSLIERNAFDG 264 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE-------------------------CTTSCCCEECTTTTTT
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEE-------------------------eCCCcCceECHHHhcC
Confidence 23 345555555555555555555555555555555555 4555555555566666
Q ss_pred ccccceeecCCCccccCCchhhhccccceEEEccCcccccccC
Q 001274 648 LQMLEALYLDDNQLIGEIPASMGEQMSLLVCNLSNNNLVGTVP 690 (1109)
Q Consensus 648 l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g~~p 690 (1109)
+++|+.|||++|+|++..+..+..+++|+.|+|++|++.|...
T Consensus 265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 6677777777777765555566666777777777777666554
No 311
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=7.7e-28 Score=284.14 Aligned_cols=252 Identities=24% Similarity=0.262 Sum_probs=153.0
Q ss_pred cCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccc
Q 001274 409 HLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELY 488 (1109)
Q Consensus 409 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 488 (1109)
....++.+++.++. +|..+. ++++.|+|++|++++..+..|..+++|++|+|++|+++++.+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 34566666666663 333332 456666666666666655666666666666666666665555666666666666666
Q ss_pred cccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEeccc-CcccccCCcCCCCCCCCCeeecCCCcCccC
Q 001274 489 QNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISS-NSLSGTIPHELGNCVNLQRLDLSRNQFTGS 567 (1109)
Q Consensus 489 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 567 (1109)
+|+|+++.+..|..+++|++|+|++|++++..+..|.++++|++|+|++ |.+....+..|.++++|++|+|++|+++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 6666655555566666666666666666655555566666666666665 3333333335556666666666666665 3
Q ss_pred CCcccccccccceecccccccccccCcccCCCcccceeeccCccccccccccccccchhhhhhccCCccccccccccccC
Q 001274 568 APEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGN 647 (1109)
Q Consensus 568 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~ 647 (1109)
+| .+..+++|+.|+|++|++++..|..|.++++|+.|+|+ +|+|++..|..|..
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-------------------------~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI-------------------------QSQIQVIERNAFDN 253 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT-------------------------TCCCCEECTTSSTT
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECC-------------------------CCceeEEChhhhcC
Confidence 33 35555555555555555555555555555555555554 55555555666677
Q ss_pred ccccceeecCCCccccCCchhhhccccceEEEccCcccccccC
Q 001274 648 LQMLEALYLDDNQLIGEIPASMGEQMSLLVCNLSNNNLVGTVP 690 (1109)
Q Consensus 648 l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g~~p 690 (1109)
+++|+.|||++|+|++..+..+..+++|+.|+|++|++.|...
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 7777777777777776666667777777777777777776554
No 312
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=281.12 Aligned_cols=249 Identities=23% Similarity=0.228 Sum_probs=214.1
Q ss_pred CccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecC
Q 001274 361 QLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLG 440 (1109)
Q Consensus 361 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 440 (1109)
....++.++++++ .+|..+. ++++.|+|++|++++..+..|..+++|++|+|++|++.+..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3567777777777 5565543 577888888888887777888888888888888888888888888888999999999
Q ss_pred CccccCCCCCCCccccccceeecccccccccCCccccCCcccceecccc-ccccCCCCccccccccccEEEccCCccCCC
Q 001274 441 SNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQ-NRFSGLIPPEIGKLRNLERLHLSENYFVGY 519 (1109)
Q Consensus 441 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 519 (1109)
+|+|++..+..|..+++|++|+|++|+++...+..|.++++|++|+|++ |.+..+.+..|.++++|++|+|++|+++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 9999877777888899999999999999888888899999999999998 45565556678999999999999999985
Q ss_pred CChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCC
Q 001274 520 IPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGL 599 (1109)
Q Consensus 520 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 599 (1109)
+| .+..+++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|.++++|+.|+|++|++++..+..|..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 44 48889999999999999998889999999999999999999998888899999999999999999998888889999
Q ss_pred cccceeeccCccccc
Q 001274 600 ARLTELQMGGNIFSG 614 (1109)
Q Consensus 600 ~~L~~L~l~~N~l~~ 614 (1109)
++|+.|+|++|++..
T Consensus 279 ~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 279 HHLERIHLHHNPWNC 293 (440)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEcCCCCccC
Confidence 999999999999874
No 313
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.9e-28 Score=295.89 Aligned_cols=292 Identities=25% Similarity=0.337 Sum_probs=169.0
Q ss_pred CCCCCCCCCCCCCCCccceeeec--------CCeEEEEeccCccccccccccccCccccceeecccCccCCCCCccccCC
Q 001274 48 SNNLESWNSSDMTPCNWIGVECT--------DFKVTSVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANC 119 (1109)
Q Consensus 48 ~~~~~~W~~~~~~~c~w~gv~C~--------~~~v~~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l 119 (1109)
...+++|... .+||.|.|..|. ...++.+++++++|+ .+|..+. ++|+.|+|++|.++ .+|. .+
T Consensus 9 ~~~w~~W~~~-~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l 80 (622)
T 3g06_A 9 DAVWSAWRRA-APAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LP 80 (622)
T ss_dssp -CHHHHHHHT-CCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CC
T ss_pred HHHHHHHHhc-CCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cC
Confidence 3456778764 378999876542 234666666666665 4454443 56666666666665 3444 34
Q ss_pred CCCceEEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceecc
Q 001274 120 SSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRA 199 (1109)
Q Consensus 120 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 199 (1109)
++|++|+|++|++++ +|. .+++|++|+|++|.+++ +|. .+++|++|+|++|++++ +|.. +
T Consensus 81 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l-------- 140 (622)
T 3g06_A 81 PELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---P-------- 140 (622)
T ss_dssp TTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---C--------
T ss_pred CCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---C--------
Confidence 556666666666552 333 34555555555555543 232 34455555555555542 3332 2
Q ss_pred ccccccCCCCccccccccchhhhcccccccccCchhhhccccccceecccccccCCCCCCccccccccceeeeeccceec
Q 001274 200 GHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGG 279 (1109)
Q Consensus 200 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 279 (1109)
++|++|+|++|++++ +|. .+.+|+.|++++|+++ .+| ..+++|+.|++++|++++
T Consensus 141 ----------------~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~~- 195 (622)
T 3g06_A 141 ----------------PGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLAS- 195 (622)
T ss_dssp ----------------TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-
T ss_pred ----------------CCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCCCC-
Confidence 444445555554443 222 2244555566666665 244 334556666666666653
Q ss_pred CchhhhccCccceEEeecccccCccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCC
Q 001274 280 LPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQL 359 (1109)
Q Consensus 280 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 359 (1109)
+|.. +++|+.|++++|.++ .+|.. +++|++|+|++|++++ +| ..+++|+.|++++|.++. +|. .+
T Consensus 196 l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~ 260 (622)
T 3g06_A 196 LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LP 260 (622)
T ss_dssp CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CC
T ss_pred CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---cc
Confidence 3322 356666666666666 33332 3567777777777765 33 345667777777777763 343 45
Q ss_pred CCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccC
Q 001274 360 TQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNS 408 (1109)
Q Consensus 360 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 408 (1109)
++|++|+|++|+|+ .+|..|.++++|+.|+|++|.+++..|..+..++
T Consensus 261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 67888888888887 6677788888888888888888877766555443
No 314
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.2e-27 Score=283.58 Aligned_cols=249 Identities=20% Similarity=0.202 Sum_probs=189.5
Q ss_pred ccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCC
Q 001274 362 LHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGS 441 (1109)
Q Consensus 362 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 441 (1109)
...++.+++.++ .+|..+. ++++.|+|++|++++..|..|..+++|++|+|++|++.+..+..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 455666666666 4454332 4667777777777766666777777777777777777766667777777777777777
Q ss_pred ccccCCCCCCCccccccceeecccccccccCCccccCCcccceecccc-ccccCCCCccccccccccEEEccCCccCCCC
Q 001274 442 NRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQ-NRFSGLIPPEIGKLRNLERLHLSENYFVGYI 520 (1109)
Q Consensus 442 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 520 (1109)
|++++..+..|..+++|++|+|++|+++.+.+..|.++++|++|+|++ |.+..+.+..|.++++|++|+|++|++++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 777766666677777888888888888777777788888888888887 455555555688888888888888888754
Q ss_pred ChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCc
Q 001274 521 PSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLA 600 (1109)
Q Consensus 521 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 600 (1109)
| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 3 477788888888888888877788888888888888888888877788888888888888888888877778888888
Q ss_pred ccceeeccCcccccc
Q 001274 601 RLTELQMGGNIFSGS 615 (1109)
Q Consensus 601 ~L~~L~l~~N~l~~~ 615 (1109)
+|+.|+|++|++...
T Consensus 291 ~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 291 YLVELHLHHNPWNCD 305 (452)
T ss_dssp TCCEEECCSSCEECS
T ss_pred CCCEEEccCCCcCCC
Confidence 888888888888743
No 315
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.9e-28 Score=273.68 Aligned_cols=252 Identities=23% Similarity=0.252 Sum_probs=158.7
Q ss_pred cccccccceeccccccccCCCCccccccccchhhhcccccc-cccCchhhh-------ccccccceecccccccCCCCCC
Q 001274 188 ISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSL-EGFLPSELE-------KLRNLTDLILWQNHLSGEIPPT 259 (1109)
Q Consensus 188 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~L~~N~l~~~~p~~ 259 (1109)
++..++|+.|++++|.+ .+|..+... |++|+|++|.+ ...+|..+. ++++|++|+|++|++++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 46667788888888887 667666554 88888888888 445666665 6788888888888888777776
Q ss_pred c--cccccccceeeeeccceecCchhhhcc-----CccceEEeecccccCccCcccCCCCcCcEEEccCCcccCCC--cc
Q 001274 260 I--GNIQSLELLALHENSFSGGLPKELGKL-----SRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFI--PR 330 (1109)
Q Consensus 260 l--~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--p~ 330 (1109)
+ +.+++|++|+|++|++++. |..++.+ ++|++|++++|++++..|..++++++|++|+|++|++.+.+ +.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 6 7788888888888888866 7777776 78888888888887777777778888888888888766542 22
Q ss_pred cc--cCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCC-Cccccc
Q 001274 331 EL--GLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIP-PHIGVN 407 (1109)
Q Consensus 331 ~l--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~ 407 (1109)
.+ +.+++|+.|++++|.+++.. ......+.++++|+.|+|++|++++..| ..+..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~---------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPS---------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHH---------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred HHHhccCCCCCEEECCCCcCcchH---------------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 22 44455555555555444210 1111222344445555555555544432 233344
Q ss_pred CcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccc
Q 001274 408 SHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTG 470 (1109)
Q Consensus 408 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 470 (1109)
++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++. |. +..+++|++|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 55555555555555 3344333 5566666666666554 33 5666666666666666653
No 316
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=9.3e-29 Score=278.39 Aligned_cols=265 Identities=21% Similarity=0.177 Sum_probs=158.5
Q ss_pred EEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhcccccceEEccccc
Q 001274 316 EIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNH 395 (1109)
Q Consensus 316 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 395 (1109)
..+++.+.+...+...+..+++|+.|++++|.+++..|..|..+++|++|+|++|++++..+ |..+++|++|++++|+
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 34455555544444444444555555555555555555556666666666666666654333 5566666666666666
Q ss_pred ccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCcc
Q 001274 396 LEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIE 475 (1109)
Q Consensus 396 l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 475 (1109)
+++.. ..++|++|++++|++.+..+.. +++|++|++++|++++..+..+..+++|++|++++|++++..+..
T Consensus 92 l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 92 VQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 65322 2256666666666666544332 455666666666666655556666666666666666666655555
Q ss_pred cc-CCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCC
Q 001274 476 FY-NLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNL 554 (1109)
Q Consensus 476 ~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 554 (1109)
+. .+++|++|+|++|.+++. + ....+++|++|+|++|++++. |..+..+++|++|+|++|+|+ .+|..+..+++|
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred HhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence 53 566777777777776654 2 223466677777777777643 334666677777777777776 456666666777
Q ss_pred CeeecCCCcCc-cCCCcccccccccceeccc-ccccccccCc
Q 001274 555 QRLDLSRNQFT-GSAPEELGQLVNLELLKLS-DNKLTGAIPS 594 (1109)
Q Consensus 555 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls-~N~l~~~~p~ 594 (1109)
+.|+|++|.++ +.+|..+..+++|+.|+++ .+.++|..|.
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 77777777766 5566666666666666666 3345544443
No 317
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=5.1e-29 Score=280.53 Aligned_cols=269 Identities=21% Similarity=0.187 Sum_probs=170.4
Q ss_pred ceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccc
Q 001274 339 CLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMN 418 (1109)
Q Consensus 339 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N 418 (1109)
+.++++.+.+.......+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 344555555554444445555566666666666666555666666666666666666654443 555556666666666
Q ss_pred cccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCc
Q 001274 419 NLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPP 498 (1109)
Q Consensus 419 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 498 (1109)
++++.. ..++|++|++++|++++..+.. +++|++|++++|++++..+.
T Consensus 91 ~l~~l~-----------------------------~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~ 138 (317)
T 3o53_A 91 YVQELL-----------------------------VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDL 138 (317)
T ss_dssp EEEEEE-----------------------------ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGB
T ss_pred cccccc-----------------------------CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccch
Confidence 555322 1244555555555555443332 45566677777777666666
Q ss_pred cccccccccEEEccCCccCCCCChhh-cccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccc
Q 001274 499 EIGKLRNLERLHLSENYFVGYIPSEV-GNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVN 577 (1109)
Q Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 577 (1109)
.+..+++|++|+|++|++++..+..+ ..+++|++|+|++|++++. |. ...+++|++|+|++|++++ +|..+..+++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 215 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAG 215 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTT
T ss_pred hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCc
Confidence 66677777777777777776555555 3567777777777777744 32 3347777777777777774 4445777777
Q ss_pred cceecccccccccccCcccCCCcccceeeccCcccc-ccccccccccchhhhhhccC-Ccccccccccccc
Q 001274 578 LELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFS-GSIPVALGQLTALQIALNIS-HNNLSGVIPYELG 646 (1109)
Q Consensus 578 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~-~~~p~~~~~l~~l~~~L~Ls-~N~l~~~~p~~~~ 646 (1109)
|+.|+|++|+++ .+|..+..+++|+.|++++|++. +.+|..+.+++.++ .++++ .+.++|..|....
T Consensus 216 L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~-~l~l~~~~~l~~~~~~~~~ 284 (317)
T 3o53_A 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ-TVAKQTVKKLTGQNEEECT 284 (317)
T ss_dssp CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH-HHHHHHHHHHHSSSSCCCS
T ss_pred ccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce-EEECCCchhccCCchhccC
Confidence 777777777777 45666777777888888888777 66777777777776 47776 4566666554443
No 318
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.8e-26 Score=280.11 Aligned_cols=262 Identities=29% Similarity=0.340 Sum_probs=135.6
Q ss_pred CccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecC
Q 001274 361 QLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLG 440 (1109)
Q Consensus 361 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 440 (1109)
+++.|++++|+++ .+|..+. ++|+.|+|++|.++ .+|. .+++|++|+|++|+|++ +|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 3555555555555 3444332 45555555555555 2333 34555555555555553 222 44555555555
Q ss_pred CccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCC
Q 001274 441 SNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYI 520 (1109)
Q Consensus 441 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 520 (1109)
+|++++..+ .+++|+.|++++|++++ +|.. +++|++|+|++|+++++ |. .+++|+.|++++|+|++ +
T Consensus 110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-C
Confidence 555554322 34455556666665554 2222 35566666666666543 22 23456666666666664 3
Q ss_pred ChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCc
Q 001274 521 PSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLA 600 (1109)
Q Consensus 521 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 600 (1109)
| ..+++|+.|+|++|+|++ +|.. +++|+.|++++|.++ .+|.. +++|+.|+|++|+|++ +| ..++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCT
T ss_pred c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCC
Confidence 3 334566666666666663 3332 245666666666665 34432 3556666666666654 33 3335
Q ss_pred ccceeeccCccccccccccccccchhhhhhccCCccccccccccccCccccceeecCCCccccCCchhhhccccceEEEc
Q 001274 601 RLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIPASMGEQMSLLVCNL 680 (1109)
Q Consensus 601 ~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l~l 680 (1109)
+|+.|++++|.++ .+|. .+++|+.|+|++|+|+ .+|..+..+++|+.|+|
T Consensus 242 ~L~~L~Ls~N~L~-~lp~----------------------------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM----------------------------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TCCEEECCSSCCS-CCCC----------------------------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred cCcEEECCCCCCC-cCCc----------------------------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 5555555555554 2332 3344555555555555 45555555555555555
Q ss_pred cCcccccccCC
Q 001274 681 SNNNLVGTVPN 691 (1109)
Q Consensus 681 s~N~l~g~~p~ 691 (1109)
++|+++|.+|.
T Consensus 292 ~~N~l~~~~~~ 302 (622)
T 3g06_A 292 EGNPLSERTLQ 302 (622)
T ss_dssp CSCCCCHHHHH
T ss_pred cCCCCCCcCHH
Confidence 55555555443
No 319
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=7.4e-28 Score=286.83 Aligned_cols=234 Identities=22% Similarity=0.183 Sum_probs=145.6
Q ss_pred ccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEcc
Q 001274 433 KLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLS 512 (1109)
Q Consensus 433 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 512 (1109)
+|+.|+|++|.+++..|..|..+++|++|+|++|.+++..| |.++++|++|+|++|.|+++.+ .++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 45555555555554444455555555555555555554443 5556666666666666654321 2566666666
Q ss_pred CCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccc-cccccceecccccccccc
Q 001274 513 ENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELG-QLVNLELLKLSDNKLTGA 591 (1109)
Q Consensus 513 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ 591 (1109)
+|.|++..+. .+++|+.|+|++|.+++..|..++++++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 6666654432 345666666666666666666666666666666666666665666554 566666666666666655
Q ss_pred cCcccCCCcccceeeccCccccccccccccccchhhhhhccCCccccccccccccCccccceeecCCCccc-cCCchhhh
Q 001274 592 IPSSLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLI-GEIPASMG 670 (1109)
Q Consensus 592 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~ip~~~~ 670 (1109)
.+ +..+++|+.|+|++|.+++ +|..+..++.|. .|+|++|.|++ +|..++.+++|+.|+|++|+++ +.+|..+.
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~-~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVT-WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCS-EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCcc-EEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 22 2246667777777776664 333466666665 46777777775 5666777888888888888887 67777788
Q ss_pred ccccceEEEcc
Q 001274 671 EQMSLLVCNLS 681 (1109)
Q Consensus 671 ~l~~L~~l~ls 681 (1109)
.++.|..++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 88777777775
No 320
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=3.6e-30 Score=317.15 Aligned_cols=456 Identities=14% Similarity=0.122 Sum_probs=266.6
Q ss_pred CCCccceeeecCCeEEEEeccCcccccccc-ccccCccccceeecccCccCC---CCCcc------------ccCCCCCc
Q 001274 60 TPCNWIGVECTDFKVTSVDLHGLNLSGILS-PRICDLPRLVEFNISMNFVTG---SIPTD------------LANCSSLE 123 (1109)
Q Consensus 60 ~~c~w~gv~C~~~~v~~l~l~~~~l~g~~~-~~~~~l~~L~~L~ls~n~~~~---~~p~~------------l~~l~~L~ 123 (1109)
-|++|.++... ....+++.... +..+ ..+..+++|+.|+++++.... ..|.. ...+++|+
T Consensus 33 vck~W~~~~~~--~~~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~ 108 (594)
T 2p1m_B 33 VCKSWYEIERW--CRRKVFIGNCY--AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE 108 (594)
T ss_dssp SCHHHHHHHHH--HCCEEEESSTT--SSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred HHHHHHHhhhh--hceEEeecccc--ccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCC
Confidence 34579988322 23445554322 2222 335577889999998875322 12211 24577888
Q ss_pred eEEccCCcccccCCchhh-ccccceEEEcccc-ccccc-ccccccCcCCCceEEeecCCCCCCCCcccc----cccccce
Q 001274 124 ILDLCTNRLHGVIPFQLF-FINTLRKLYLCEN-YIFGE-IPEEIGNLTSLEELVIYSNNLTGAIPASIS----KLRQLRV 196 (1109)
Q Consensus 124 ~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~----~l~~L~~ 196 (1109)
+|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|+.
T Consensus 109 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~ 188 (594)
T 2p1m_B 109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188 (594)
T ss_dssp EEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCE
T ss_pred eEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcE
Confidence 888888887777666665 5778888888877 44433 444455778888888888877765544443 4456777
Q ss_pred ecccccc--ccC-CCCccccccccchhhhcccc-cccccCchhhhccccccceecccccccCCCCCCccccccccceeee
Q 001274 197 IRAGHNS--LSG-PIPPEISECEGLEVLGLAQN-SLEGFLPSELEKLRNLTDLILWQNHLSGEIPPTIGNIQSLELLALH 272 (1109)
Q Consensus 197 L~l~~n~--l~~-~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 272 (1109)
|++++|. ++. .++..+..+++|++|+|++| .+++ +|..+.++++|++|+++.+.. ++.
T Consensus 189 L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~-----------------~~~ 250 (594)
T 2p1m_B 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTA-----------------EVR 250 (594)
T ss_dssp EECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCC-----------------CCC
T ss_pred EEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccC-----------------ccc
Confidence 7777665 110 01111223455666666655 2332 455555555555555433221 023
Q ss_pred eccceecCchhhhccCccceE-EeecccccCccCcccCCCCcCcEEEccCCcccCCC-cccccCCCCcceEecccccccC
Q 001274 273 ENSFSGGLPKELGKLSRLKKL-YVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFI-PRELGLIPNLCLLQLFENMLQG 350 (1109)
Q Consensus 273 ~N~l~~~~p~~l~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~ 350 (1109)
.|.+.+ ++..+.++++|+.| .+.+... +.++..+..+++|++|+|++|.+++.. +..+..+++|+.|++.+| +..
T Consensus 251 ~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~ 327 (594)
T 2p1m_B 251 PDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED 327 (594)
T ss_dssp HHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH
T ss_pred hhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH
Confidence 333442 33456666666666 2332221 233444445666777777776655332 222445667777777766 332
Q ss_pred c-ccccccCCCCccEEEcc---------cCcccCCCCcchh-cccccceEEcccccccccCCCccc-ccCcCcEEEec--
Q 001274 351 S-IPRELGQLTQLHKLDLS---------INNLTGTIPLEFQ-NLTYLVDLQLFDNHLEGTIPPHIG-VNSHLSVLDVS-- 416 (1109)
Q Consensus 351 ~-~p~~l~~l~~L~~L~Ls---------~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~-~~~~L~~L~Ls-- 416 (1109)
. ++.....+++|++|+++ .+.+++.....+. ++++|+.|.+..|.+++.....+. .+++|+.|+++
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecc
Confidence 2 22222346777777773 3444432222232 467777777777777655444443 46778888887
Q ss_pred c----ccccCc-----cchhhhcccccceeecCCccccCCCCCCCcc-ccccceeecccccccccCCccc-cCCccccee
Q 001274 417 M----NNLDGS-----IPPHLCMYQKLIFLSLGSNRLSGNIPPGLKT-CRSLMQLMLGQNQLTGSLPIEF-YNLQNLSAL 485 (1109)
Q Consensus 417 ~----N~l~~~-----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L 485 (1109)
+ |.++.. ++..+..+++|+.|+|++ .+++.....+.. +++|++|+|++|.+++.....+ .++++|++|
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L 486 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKL 486 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEE
T ss_pred cCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEE
Confidence 3 445421 223356677888888866 555443334443 6788888888888876555444 668899999
Q ss_pred ccccccccCCCCc-cccccccccEEEccCCccCCCCChhh-cccccccEEecccCccc
Q 001274 486 ELYQNRFSGLIPP-EIGKLRNLERLHLSENYFVGYIPSEV-GNLEHLVTFNISSNSLS 541 (1109)
Q Consensus 486 ~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~ 541 (1109)
+|++|.+++.... .+..+++|++|++++|+++......+ ..+++|+...+..+.-.
T Consensus 487 ~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 487 EIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp EEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred ECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 9999998644333 44568899999999998853323333 45677877777666543
No 321
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-27 Score=281.49 Aligned_cols=234 Identities=22% Similarity=0.194 Sum_probs=123.8
Q ss_pred CccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecC
Q 001274 361 QLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLG 440 (1109)
Q Consensus 361 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 440 (1109)
+|++|+|++|.+++..|..|.++++|+.|+|++|.+++..| +..+++|++|+|++|.|++..+ .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 56666666666665555556666666666666666554443 5555555666666555553321 1444455555
Q ss_pred CccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCC
Q 001274 441 SNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYI 520 (1109)
Q Consensus 441 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 520 (1109)
+|.+++..+. .+++|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++.+
T Consensus 108 ~N~l~~~~~~---------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 108 NNNISRVSCS---------------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp SSCCCCEEEC---------------------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred CCcCCCCCcc---------------------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence 5444433222 1234455555555555444445555555555555555555544
Q ss_pred Chhhc-ccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCC
Q 001274 521 PSEVG-NLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGL 599 (1109)
Q Consensus 521 p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 599 (1109)
|..+. .+++|++|+|++|.|++..+ +..+++|+.|+|++|.|++ +|..+..+++|+.|+|++|++++ +|..+..+
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l 236 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFS 236 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCC
T ss_pred hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccC
Confidence 44443 45555555555555554321 2235556666666666654 33335556666666666666653 44455556
Q ss_pred cccceeeccCcccc-ccccccccccchhhhhhccC
Q 001274 600 ARLTELQMGGNIFS-GSIPVALGQLTALQIALNIS 633 (1109)
Q Consensus 600 ~~L~~L~l~~N~l~-~~~p~~~~~l~~l~~~L~Ls 633 (1109)
++|+.|++++|++. +.+|..+..++.+. .++++
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L~-~l~~~ 270 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQ-TVAKQ 270 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHHTTCHHHH-HHHHH
T ss_pred CCCCEEEcCCCCCcCcchHHHHHhCCCCc-EEecc
Confidence 66666666666665 45555555555554 24443
No 322
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.94 E-value=1.7e-27 Score=287.52 Aligned_cols=186 Identities=17% Similarity=0.081 Sum_probs=131.5
Q ss_pred EecCCcceEEEEEe-cCCcEEEEEEeeccCCC--------cchhHHHHHHHHHhccC-CCCceeeEEEEEEeCCceEEEE
Q 001274 810 IGRGACGTVYKATL-ANGEVIAVKKIKLRGEG--------ATADNSFLAEISTLGKI-RHRNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 810 lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~--------~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 879 (1109)
.+.|++|.+..++. --|+.||+|++...... ....++|.+|+++|+++ .|+||+++++++.+++..||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 56777777766653 35889999999754221 12235799999999999 7999999999999999999999
Q ss_pred EeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCC
Q 001274 880 EYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLP 959 (1109)
Q Consensus 880 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~ 959 (1109)
||++|++|.+++...+. ++.. +|+.||+.||+|+| ++|||||||||+|||++.+|.+||+|||+|+.....
T Consensus 322 Eyv~G~~L~d~i~~~~~---l~~~---~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~ 392 (569)
T 4azs_A 322 EKLPGRLLSDMLAAGEE---IDRE---KILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD 392 (569)
T ss_dssp ECCCSEEHHHHHHTTCC---CCHH---HHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC--
T ss_pred ecCCCCcHHHHHHhCCC---CCHH---HHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeecccCeeCCCC
Confidence 99999999999987654 5543 58899999999999 789999999999999999999999999999876532
Q ss_pred CCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCC
Q 001274 960 YSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSP 1006 (1109)
Q Consensus 960 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~p 1006 (1109)
.......+||++|+|||++.+ .+..++|+||+|++.+++.++..+
T Consensus 393 -~~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 393 -CSWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp --CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred -CccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence 233456789999999999876 467789999999998887666544
No 323
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.2e-25 Score=246.66 Aligned_cols=214 Identities=21% Similarity=0.265 Sum_probs=129.3
Q ss_pred CCCccceeeecC-CeEEEEeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCceEEccCCcccccCCc
Q 001274 60 TPCNWIGVECTD-FKVTSVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPF 138 (1109)
Q Consensus 60 ~~c~w~gv~C~~-~~v~~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 138 (1109)
++|.|.|+.|+. ..++.+++++++++. +|..+. ++|+.|+|++|.+++..+..++++++|++|+|++|.++...+.
T Consensus 3 ~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~ 79 (270)
T 2o6q_A 3 ALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79 (270)
T ss_dssp CCBGGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred ccCCCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence 789999999975 356788888888874 454443 5677777777777766666777777777777777777644444
Q ss_pred hhhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccccccCCCCccccccccc
Q 001274 139 QLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGL 218 (1109)
Q Consensus 139 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 218 (1109)
.+..+++|++|+|++|.+++..+..+.++++|++|+|++|++++..+..|+++++|++|++++|.+++..+..|..+++|
T Consensus 80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 45566666666666666665555556666666666666666665555555666666666666665554444444555555
Q ss_pred hhhhcccccccccCchhhhccccccceecccccccCCCCCCccccccccceeeeeccc
Q 001274 219 EVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLSGEIPPTIGNIQSLELLALHENSF 276 (1109)
Q Consensus 219 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 276 (1109)
++|+|++|++++..+..|.++++|++|+|++|++++..+..+..+++|+.|+|++|.+
T Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 5555555555444444444444444444444444433333344444444444444443
No 324
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1e-28 Score=304.19 Aligned_cols=426 Identities=15% Similarity=0.104 Sum_probs=273.8
Q ss_pred cccCCCCCceEEccCCccccc---CCc------------hhhccccceEEEccccccccccccccc-CcCCCceEEeecC
Q 001274 115 DLANCSSLEILDLCTNRLHGV---IPF------------QLFFINTLRKLYLCENYIFGEIPEEIG-NLTSLEELVIYSN 178 (1109)
Q Consensus 115 ~l~~l~~L~~L~Ls~n~l~~~---~~~------------~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n 178 (1109)
.+.++++|++|+|+++..... .|. ....+++|++|+|++|.+++..+..+. .+++|++|+|++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 356778888888888753211 111 112345566666666665555554444 4556666666655
Q ss_pred -CCCCC-CCcccccccccceeccccccccCCCCccccccccchhhhcccccccccCchhhhccccccceeccccc--ccC
Q 001274 179 -NLTGA-IPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNH--LSG 254 (1109)
Q Consensus 179 -~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~--l~~ 254 (1109)
.++.. ++..+.++++|++|++++|.+++..+..+.. ....+++|++|+|++|. ++.
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~--------------------~~~~~~~L~~L~l~~~~~~~~~ 200 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH--------------------FPDTYTSLVSLNISCLASEVSF 200 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG--------------------SCTTCCCCCEEECTTCCSCCCH
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH--------------------HhhcCCcCcEEEecccCCcCCH
Confidence 33321 2222334555555555555544332222211 11234466666666665 110
Q ss_pred C-CCCCccccccccceeeeec-cceecCchhhhccCccceEEee-------cccccCccCcccCCCCcCcEE-EccCCcc
Q 001274 255 E-IPPTIGNIQSLELLALHEN-SFSGGLPKELGKLSRLKKLYVY-------TNELNGTIPHELGNCTSAVEI-DLSENQL 324 (1109)
Q Consensus 255 ~-~p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~l~-------~n~l~~~~~~~l~~l~~L~~L-~Ls~n~l 324 (1109)
. ++..+.++++|++|++++| .++ .+|..+..+++|++|++. .|.+.+ ++..+.++++|+.| ++.+...
T Consensus 201 ~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~ 278 (594)
T 2p1m_B 201 SALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP 278 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG
T ss_pred HHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch
Confidence 0 1111233467777777777 344 377777888888888854 444443 44578899999999 4554433
Q ss_pred cCCCcccccCCCCcceEecccccccCcccc-cccCCCCccEEEcccCcccCC-CCcchhcccccceEEccc---------
Q 001274 325 TGFIPRELGLIPNLCLLQLFENMLQGSIPR-ELGQLTQLHKLDLSINNLTGT-IPLEFQNLTYLVDLQLFD--------- 393 (1109)
Q Consensus 325 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~--------- 393 (1109)
+.++..+..+++|+.|++++|.+++.... .+..+++|++|++++| ++.. ++.....+++|++|++.+
T Consensus 279 -~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 279 -AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp -GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCS
T ss_pred -hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccC
Confidence 34555566789999999999997755433 3568899999999998 5422 233344689999999943
Q ss_pred ccccccCCCccc-ccCcCcEEEeccccccCccchhhh-cccccceeecC--C----ccccCCCC-----CCCccccccce
Q 001274 394 NHLEGTIPPHIG-VNSHLSVLDVSMNNLDGSIPPHLC-MYQKLIFLSLG--S----NRLSGNIP-----PGLKTCRSLMQ 460 (1109)
Q Consensus 394 N~l~~~~p~~~~-~~~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~L~--~----N~l~~~~~-----~~~~~l~~L~~ 460 (1109)
+.+++.....+. .+++|++|+++.|.+++.....+. .+++|+.|+++ + |.++.... ..+..+++|++
T Consensus 357 ~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~ 436 (594)
T 2p1m_B 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR 436 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCE
T ss_pred CCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccE
Confidence 455433322332 478999999999999877666665 58999999999 4 56653211 12567889999
Q ss_pred eecccccccccCCccccC-CcccceeccccccccCCCCccc-cccccccEEEccCCccCCCCCh-hhcccccccEEeccc
Q 001274 461 LMLGQNQLTGSLPIEFYN-LQNLSALELYQNRFSGLIPPEI-GKLRNLERLHLSENYFVGYIPS-EVGNLEHLVTFNISS 537 (1109)
Q Consensus 461 L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~ 537 (1109)
|++++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++.... .+..+++|++|++++
T Consensus 437 L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515 (594)
T ss_dssp EECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEES
T ss_pred EeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeC
Confidence 99987 666555555554 8999999999999976544444 6789999999999999654333 445689999999999
Q ss_pred CcccccCCcCC-CCCCCCCeeecCCCcCc
Q 001274 538 NSLSGTIPHEL-GNCVNLQRLDLSRNQFT 565 (1109)
Q Consensus 538 N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~ 565 (1109)
|+++......+ ..+++|+...+..+.-.
T Consensus 516 ~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 516 CSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp SCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred CCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 99964433334 45677877777766543
No 325
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.9e-25 Score=246.26 Aligned_cols=232 Identities=23% Similarity=0.251 Sum_probs=141.5
Q ss_pred eecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCcc
Q 001274 437 LSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYF 516 (1109)
Q Consensus 437 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 516 (1109)
++..+..++ .+|..+. ++|++|++++|++++..+..|.++++|++|+|++|+++++.+..|..+++|++|+|++|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 444444444 2333332 3566666666666655555566666666666666666555555555566666666666665
Q ss_pred CCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccC-CCcccccccccceecccccccccccCcc
Q 001274 517 VGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGS-APEELGQLVNLELLKLSDNKLTGAIPSS 595 (1109)
Q Consensus 517 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 595 (1109)
++..+..|.++++|++|++++|++++..+..+..+++|++|++++|++++. +|..|..+++|+.|+|++|++++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 555555555555555555555555544444555555555555555555532 3555555555555555555555444444
Q ss_pred cCCCcccceeeccCccccccccccccccchhhhhhccCCccccccccccccCccccceeecCCCccccCCchhhhccccc
Q 001274 596 LGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIPASMGEQMSL 675 (1109)
Q Consensus 596 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L 675 (1109)
|..+++|+.++ ..|++++|.+++..+..+.. .+|+.|+|++|++++..+..+..+++|
T Consensus 169 ~~~l~~L~~l~---------------------l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 169 LRVLHQMPLLN---------------------LSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp GHHHHTCTTCC---------------------EEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred hhhhhhccccc---------------------eeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccc
Confidence 44444333211 14777888888666655554 489999999999997666678899999
Q ss_pred eEEEccCcccccccCCCc
Q 001274 676 LVCNLSNNNLVGTVPNTT 693 (1109)
Q Consensus 676 ~~l~ls~N~l~g~~p~~~ 693 (1109)
+.|+|++|+++|..|...
T Consensus 227 ~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 227 QKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp CEEECCSSCBCCCTTTTH
T ss_pred cEEEccCCcccccCCchH
Confidence 999999999999888653
No 326
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5.1e-25 Score=242.77 Aligned_cols=207 Identities=22% Similarity=0.279 Sum_probs=128.2
Q ss_pred cCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccc
Q 001274 409 HLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELY 488 (1109)
Q Consensus 409 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 488 (1109)
+|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555555555555555555545555556666666666666665555666666666666666
Q ss_pred cccccCCCCccccccccccEEEccCCccCCC-CChhhcccccccEEecccCcccccCCcCCCCCCCCC----eeecCCCc
Q 001274 489 QNRFSGLIPPEIGKLRNLERLHLSENYFVGY-IPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQ----RLDLSRNQ 563 (1109)
Q Consensus 489 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~ 563 (1109)
+|++.+..+..+..+++|++|++++|++++. +|..+.++++|++|+|++|++++..+..+..+++|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 6666665555566666666666666666653 366666666666666666666655555565555555 66777777
Q ss_pred CccCCCcccccccccceecccccccccccCcccCCCcccceeeccCccccccc
Q 001274 564 FTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSI 616 (1109)
Q Consensus 564 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 616 (1109)
+++..+..+ ...+|+.|+|++|++++..+..|..+++|+.|++++|++.+..
T Consensus 189 l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 189 MNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 764433333 3346777777777777666666677777777777777777544
No 327
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=8.1e-25 Score=240.38 Aligned_cols=16 Identities=6% Similarity=0.167 Sum_probs=6.9
Q ss_pred hcccccceEEcccccc
Q 001274 381 QNLTYLVDLQLFDNHL 396 (1109)
Q Consensus 381 ~~l~~L~~L~L~~N~l 396 (1109)
..+++|+.|++++|.+
T Consensus 38 ~~l~~L~~L~l~~~~i 53 (272)
T 3rfs_A 38 NELNSIDQIIANNSDI 53 (272)
T ss_dssp HHHTTCCEEECTTSCC
T ss_pred ccccceeeeeeCCCCc
Confidence 3344444444444444
No 328
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=9.6e-24 Score=231.61 Aligned_cols=205 Identities=25% Similarity=0.303 Sum_probs=153.5
Q ss_pred cCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccc
Q 001274 409 HLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELY 488 (1109)
Q Consensus 409 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 488 (1109)
..+.+++++|+++. +|..+. ++|+.|+|++|++++..+..|..+++|++|++++|+++.+.+..|.++++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 34555666665553 333222 456666666666666666667777777777777777776666667778888888888
Q ss_pred cccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCC
Q 001274 489 QNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSA 568 (1109)
Q Consensus 489 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 568 (1109)
+|+++++.+..|..+++|++|++++|++++..+..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88887776677788888888888888888777777888888888888888888666666788888888888888888766
Q ss_pred CcccccccccceecccccccccccCcccCCCcccceeeccCccccccc
Q 001274 569 PEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSI 616 (1109)
Q Consensus 569 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 616 (1109)
+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++...-
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 667888888888888888888777777888888888888888887543
No 329
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.3e-24 Score=236.78 Aligned_cols=211 Identities=23% Similarity=0.261 Sum_probs=127.5
Q ss_pred cccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccce
Q 001274 405 GVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSA 484 (1109)
Q Consensus 405 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 484 (1109)
..+++|+.|++++|.+... ..+..+++|++|++++|.+++. +.+..+++|++|++++|++++..+..|.++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3445555555555555422 2345555555555555555542 24555555666666666666555555666666666
Q ss_pred eccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcC
Q 001274 485 LELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQF 564 (1109)
Q Consensus 485 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 564 (1109)
|+|++|++++..+..|..+++|++|++++|++++..+..++.+++|++|+|++|++++..+..+..+++|++|+|++|++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 66666666655555566666666666666666655555566666666666666666655555566666666666666666
Q ss_pred ccCCCcccccccccceecccccccccccCcccCCCcccceeeccCccccccccccccccchh
Q 001274 565 TGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIPVALGQLTAL 626 (1109)
Q Consensus 565 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l 626 (1109)
++..|..|..+++|+.|+|++|++.+. +++|+.|++..|.++|.+|.+++.+...
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred CccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 665555566666666666666666533 3456666677777777777766666554
No 330
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=5.4e-24 Score=235.64 Aligned_cols=205 Identities=27% Similarity=0.331 Sum_probs=122.6
Q ss_pred cCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCe
Q 001274 477 YNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQR 556 (1109)
Q Consensus 477 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 556 (1109)
.++++++++++++|.++.+ |..+. ++++.|+|++|++++..+..|.++++|++|+|++|+|++..+ .+.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred cccCCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 3444445555555554432 22222 345555555555554444555555555555555555553222 144555555
Q ss_pred eecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCccccccccccccccchhhhhhccCCcc
Q 001274 557 LDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNN 636 (1109)
Q Consensus 557 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~ 636 (1109)
|+|++|+|+ .+|..+..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..+..++.|+ .|+|++|+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~ 159 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE-KLSLANNN 159 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC-EEECTTSC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC-EEECCCCc
Confidence 555555555 3455555555555555555555555555555555555555555555544444445555554 36666666
Q ss_pred ccccccccccCccccceeecCCCccccCCchhhhccccceEEEccCccccccc
Q 001274 637 LSGVIPYELGNLQMLEALYLDDNQLIGEIPASMGEQMSLLVCNLSNNNLVGTV 689 (1109)
Q Consensus 637 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g~~ 689 (1109)
|++..+..|..+++|+.|+|++|+|+ .+|..+..+..|+.++|++|++.|..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 66666666788899999999999998 78888888889999999999988765
No 331
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=4.4e-26 Score=259.18 Aligned_cols=265 Identities=15% Similarity=0.175 Sum_probs=183.0
Q ss_pred CCCccceeeecCCeEEEEeccCccccccccccccCc--cccceeecccCccCCCCCccccCCCCCceEEccCCccccc-C
Q 001274 60 TPCNWIGVECTDFKVTSVDLHGLNLSGILSPRICDL--PRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGV-I 136 (1109)
Q Consensus 60 ~~c~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~l--~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~ 136 (1109)
-|..|.++.|+...++.+|++++++. +..++.+ ++++.|++++|.+++..+. +.++++|++|+|++|.+++. +
T Consensus 35 vc~~W~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 35 VCKRWYRLASDESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp SCHHHHHHHTCSTTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHH
T ss_pred HHHHHHHHhcCchhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHH
Confidence 35579999998777889999998876 4556666 8899999999999887765 56789999999999988876 7
Q ss_pred CchhhccccceEEEcccccccccccccccCcCCCceEEeecC-CCCCC-CCcccccccccceeccccc-cccCC-CCccc
Q 001274 137 PFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSN-NLTGA-IPASISKLRQLRVIRAGHN-SLSGP-IPPEI 212 (1109)
Q Consensus 137 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~l 212 (1109)
|..+..+++|++|+|++|.+++..|..++.+++|++|+|++| .+++. ++..+.++++|++|++++| .+++. ++..+
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 777888889999999999888888888888888999999888 67753 5666777888888888888 77643 45556
Q ss_pred cccc-cchhhhcccc--ccc-ccCchhhhccccccceeccccc-ccCCCCCCccccccccceeeeecc-ceecCchhhhc
Q 001274 213 SECE-GLEVLGLAQN--SLE-GFLPSELEKLRNLTDLILWQNH-LSGEIPPTIGNIQSLELLALHENS-FSGGLPKELGK 286 (1109)
Q Consensus 213 ~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~ 286 (1109)
..++ +|++|+|++| .++ +.+|..+..+++|++|+|++|. +++..+..++.+++|++|++++|. +.......+++
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 270 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 270 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc
Confidence 6677 7777777777 344 3455566666677777777766 555555566666666666666663 22222224555
Q ss_pred cCccceEEeecccccCccCcccCCC-CcCcEEEccCCcccCCCcccc
Q 001274 287 LSRLKKLYVYTNELNGTIPHELGNC-TSAVEIDLSENQLTGFIPREL 332 (1109)
Q Consensus 287 l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l 332 (1109)
+++|++|++++| ++.. .+..+ .++..|+++.|++++..|..+
T Consensus 271 ~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 271 IPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp CTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred CCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcc
Confidence 555666655555 2211 12222 124444455555555444433
No 332
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.8e-25 Score=256.62 Aligned_cols=261 Identities=18% Similarity=0.200 Sum_probs=160.9
Q ss_pred EecccccccCcccccccCCCCccEEEcccCcccCCCC----cchhccc-ccceEEcccccccccCCCccccc-----CcC
Q 001274 341 LQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIP----LEFQNLT-YLVDLQLFDNHLEGTIPPHIGVN-----SHL 410 (1109)
Q Consensus 341 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~-----~~L 410 (1109)
+.++.|.+++.+|..+...++|++|||++|++++..+ ..|.+++ +|++|+|++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677777777777777766678888888888776555 5566666 67777777777766555555553 666
Q ss_pred cEEEeccccccCccchhhhcc-----cccceeecCCccccCCCCCCCccccccceeecccccccccCCccccC-Ccccce
Q 001274 411 SVLDVSMNNLDGSIPPHLCMY-----QKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYN-LQNLSA 484 (1109)
Q Consensus 411 ~~L~Ls~N~l~~~~~~~l~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~ 484 (1109)
++|+|++|.+.+..+..++.. ++|++|+|++|++++..+..+.. .+.. .++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCceeE
Confidence 666666666665555443332 45555555555554332222111 1222 246666
Q ss_pred eccccccccCCCC----ccccccc-cccEEEccCCccCCCCChhhcc----c-ccccEEecccCccccc----CCcCCCC
Q 001274 485 LELYQNRFSGLIP----PEIGKLR-NLERLHLSENYFVGYIPSEVGN----L-EHLVTFNISSNSLSGT----IPHELGN 550 (1109)
Q Consensus 485 L~L~~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~----l-~~L~~L~Ls~N~l~~~----~p~~~~~ 550 (1109)
|+|++|.+++..+ ..+..++ +|++|+|++|++++..+..+.. + ++|++|+|++|.|++. ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 6666666654322 2233343 6777777777776655544433 3 4777777777777642 3444444
Q ss_pred -CCCCCeeecCCCcCccCCC----cccccccccceecccccccccc-------cCcccCCCcccceeeccCccccccccc
Q 001274 551 -CVNLQRLDLSRNQFTGSAP----EELGQLVNLELLKLSDNKLTGA-------IPSSLGGLARLTELQMGGNIFSGSIPV 618 (1109)
Q Consensus 551 -l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~L~l~~N~l~~~~p~ 618 (1109)
.++|++|||++|.+++..+ ..+..+++|+.|+|++|.+.+. ++..+..+++|+.||+++|++.+..+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 3477888888887775443 2345667788888888874433 334677888888999999988876555
Q ss_pred ccc
Q 001274 619 ALG 621 (1109)
Q Consensus 619 ~~~ 621 (1109)
.+.
T Consensus 303 ~~~ 305 (362)
T 3goz_A 303 PIS 305 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 333
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.9e-23 Score=229.77 Aligned_cols=203 Identities=24% Similarity=0.271 Sum_probs=108.2
Q ss_pred hcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccce
Q 001274 381 QNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQ 460 (1109)
Q Consensus 381 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 460 (1109)
.++++++++++++|.++ .+|..+. +++++|+|++|.+.+..+..|..+++|++|+|++|.|++..+. .
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~------- 74 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--G------- 74 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--S-------
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--C-------
Confidence 34444444444444444 2333222 4555566666665555555555555555555555555532221 3
Q ss_pred eecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcc
Q 001274 461 LMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSL 540 (1109)
Q Consensus 461 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 540 (1109)
.+++|++|+|++|+++ .+|..+..+++|++|+|++|+|++..|..|.++++|++|+|++|+|
T Consensus 75 -----------------~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 75 -----------------TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp -----------------CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred -----------------CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence 3444444444444444 2344445555555555555555554445555555555555555555
Q ss_pred cccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCccccc
Q 001274 541 SGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSG 614 (1109)
Q Consensus 541 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 614 (1109)
++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+++ .+|..+..+.+|+.|+|++|++..
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 5444455555556666666666665444444555666666666666665 445555556667777777776653
No 334
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.90 E-value=1.6e-24 Score=259.96 Aligned_cols=187 Identities=18% Similarity=0.227 Sum_probs=146.8
Q ss_pred CCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcc------hhHHHHHHHHHhccCCCCceeeEEEEEEeCCceEEE
Q 001274 805 SEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGAT------ADNSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 805 ~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 878 (1109)
...++||+|+||+||+|+. .++.+|+|+......... ..+.+.+|++++++++||||+++..++...+..++|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 4467899999999999965 478899998754332211 134588999999999999999666666678888999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccC
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDL 958 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~ 958 (1109)
|||+++++|.+++.. +..++.|+++||+||| +++|+||||||+|||++. .+||+|||+++....
T Consensus 418 mE~~~ggsL~~~l~~-----------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~ 481 (540)
T 3en9_A 418 MSYINGKLAKDVIED-----------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNL 481 (540)
T ss_dssp EECCCSEEHHHHSTT-----------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred EECCCCCCHHHHHHH-----------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence 999999999999875 4579999999999999 779999999999999999 999999999997653
Q ss_pred CCCCC------ccccccccceeccccccC--CCCCccchhHHHHHHHHHHHhCCCCCC
Q 001274 959 PYSKS------MSAIAGSYGYIAPEYAYT--MKVTEKCDIYSFGVVLLELITGKSPVQ 1008 (1109)
Q Consensus 959 ~~~~~------~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlGvll~elltg~~pf~ 1008 (1109)
..... .....||+.|+|||++.. ..|+.++|+|+..+-..+.+.++.+|.
T Consensus 482 ~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 482 DEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred ccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 21111 135679999999999987 568888999999999998888877764
No 335
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2.9e-25 Score=254.87 Aligned_cols=260 Identities=16% Similarity=0.151 Sum_probs=123.5
Q ss_pred eecccCccCCCCCccccCCCCCceEEccCCcccccCC----chhhccc-cceEEEcccccccccccccccCc-----CCC
Q 001274 101 FNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIP----FQLFFIN-TLRKLYLCENYIFGEIPEEIGNL-----TSL 170 (1109)
Q Consensus 101 L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~L 170 (1109)
++++.|.++|.+|..+...++|++|||++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4555566666666555555556666666666655444 3444455 56666666666655555555443 566
Q ss_pred ceEEeecCCCCCCCCcccccc-----cccceeccccccccCCCCccccc-----cccchhhhcccccccccCchh----h
Q 001274 171 EELVIYSNNLTGAIPASISKL-----RQLRVIRAGHNSLSGPIPPEISE-----CEGLEVLGLAQNSLEGFLPSE----L 236 (1109)
Q Consensus 171 ~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~p~~----l 236 (1109)
++|+|++|++++..+..++.. ++|++|++++|.+++..+..+.. .++|++|+|++|.+++..+.. +
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 666666666655444433332 45555555555555443333322 134555555555554322222 2
Q ss_pred hccc-cccceecccccccCCCCCCcccc-----ccccceeeeeccceecCchhhhccCccceEEeecccccCccCcccCC
Q 001274 237 EKLR-NLTDLILWQNHLSGEIPPTIGNI-----QSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGN 310 (1109)
Q Consensus 237 ~~l~-~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 310 (1109)
..++ +|++|+|++|++++..+..++.. ++|++|+|++|.+++.... .++..+..
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~--------------------~l~~~l~~ 222 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA--------------------ELAYIFSS 222 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH--------------------HHHHHHHH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH--------------------HHHHHHhc
Confidence 2332 45555555555544333322221 3444444444444431111 12222222
Q ss_pred -CCcCcEEEccCCcccCCCc----ccccCCCCcceEecccccccCc-------ccccccCCCCccEEEcccCcccCCCCc
Q 001274 311 -CTSAVEIDLSENQLTGFIP----RELGLIPNLCLLQLFENMLQGS-------IPRELGQLTQLHKLDLSINNLTGTIPL 378 (1109)
Q Consensus 311 -l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 378 (1109)
.++|++|||++|++++..+ ..+..+++|+.|++++|.+.+. ++..+..+++|++||+++|++.+..+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 2244444444444443322 1122333344444444432221 233455666777777777777655444
Q ss_pred ch
Q 001274 379 EF 380 (1109)
Q Consensus 379 ~~ 380 (1109)
.+
T Consensus 303 ~~ 304 (362)
T 3goz_A 303 PI 304 (362)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 336
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.4e-23 Score=235.25 Aligned_cols=200 Identities=20% Similarity=0.164 Sum_probs=105.1
Q ss_pred ccceEEEcccccccccccccc--cCcCCCceEEeecCCCCCCCC----cccccccccceeccccccccCCCCcccccccc
Q 001274 144 NTLRKLYLCENYIFGEIPEEI--GNLTSLEELVIYSNNLTGAIP----ASISKLRQLRVIRAGHNSLSGPIPPEISECEG 217 (1109)
Q Consensus 144 ~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 217 (1109)
++|++|+|++|.+++.+|..+ +.+++|++|+|++|++++..+ ..+..+++|++|++++|.+++..|..|+.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555555555554 555555555555555554333 22334555555555555555555555555555
Q ss_pred chhhhccccccccc--C--chhhhccccccceecccccccCCCCC----CccccccccceeeeeccceecCchhhhcc--
Q 001274 218 LEVLGLAQNSLEGF--L--PSELEKLRNLTDLILWQNHLSGEIPP----TIGNIQSLELLALHENSFSGGLPKELGKL-- 287 (1109)
Q Consensus 218 L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-- 287 (1109)
|++|+|++|++.+. + +..+..+++|++|+|++|+++ .++. .++++++|++|+|++|++++..|..++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 55555555554431 1 112244555555555555554 2222 13444555555555555555545554444
Q ss_pred -CccceEEeecccccCccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEeccccccc
Q 001274 288 -SRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQ 349 (1109)
Q Consensus 288 -~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 349 (1109)
++|++|++++|+++ .+|..+. ++|++|||++|++++. |. +..+++|+.|++++|.++
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 45666666666665 4454443 5666666666666643 22 455566666666666655
No 337
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=5.2e-23 Score=223.13 Aligned_cols=190 Identities=19% Similarity=0.249 Sum_probs=118.9
Q ss_pred CCCccceeeecCCeEEEEeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCceEEccCCcccccCCch
Q 001274 60 TPCNWIGVECTDFKVTSVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQ 139 (1109)
Q Consensus 60 ~~c~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 139 (1109)
+||.|.|++|.. ..+.++++++++.. +|..+. ++++.|+|++|.+++..|..++++++|++|+|++|.+++..+..
T Consensus 3 ~Cp~~~gC~C~~-~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 3 TCETVTGCTCNE-GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp -CHHHHSSEEEG-GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred cCCCCCceEcCC-CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence 688999999953 24467888888773 444443 56777777777777776777777777777777777777666666
Q ss_pred hhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccccccCCCCccccccccch
Q 001274 140 LFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLE 219 (1109)
Q Consensus 140 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 219 (1109)
+..+++|++|+|++|.+++..+..++.+++|++|+|++|++++..+..|.++++|++|+|++|+|++..+..|+.+++|+
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 66666666666666666655555666666666666666666654444455666666666666666544444455555555
Q ss_pred hhhcccccccccCchhhhccccccceeccccccc
Q 001274 220 VLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLS 253 (1109)
Q Consensus 220 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 253 (1109)
+|+|++|++++..+..+..+++|++|+|++|.++
T Consensus 159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 5555555555444444444444444444444444
No 338
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=4.9e-23 Score=221.64 Aligned_cols=196 Identities=19% Similarity=0.229 Sum_probs=111.2
Q ss_pred ccceeccccccccCCCCccccccccccEEEccCCc-cCCCCChhhcccccccEEeccc-CcccccCCcCCCCCCCCCeee
Q 001274 481 NLSALELYQNRFSGLIPPEIGKLRNLERLHLSENY-FVGYIPSEVGNLEHLVTFNISS-NSLSGTIPHELGNCVNLQRLD 558 (1109)
Q Consensus 481 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ 558 (1109)
+|++|+|++|+++++.+..|..+++|++|++++|+ ++++.+..|.++++|++|+|++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444445555555555555554 4444444455555555555555 555544444555555555555
Q ss_pred cCCCcCccCCCcccccccccc---eeccccc-ccccccCcccCCCcccc-eeeccCccccccccccccccchhhhhhccC
Q 001274 559 LSRNQFTGSAPEELGQLVNLE---LLKLSDN-KLTGAIPSSLGGLARLT-ELQMGGNIFSGSIPVALGQLTALQIALNIS 633 (1109)
Q Consensus 559 Ls~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls 633 (1109)
+++|++++ +|. |..+++|+ .|++++| ++++..+..|.++++|+ +|++++|.++ .+|...+..+.|+ .|+|+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~-~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD-AVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEE-EEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCC-EEEcC
Confidence 55555553 343 45555554 5555555 55555555555555665 6666666555 4444333334443 36666
Q ss_pred Ccc-ccccccccccCc-cccceeecCCCccccCCchhhhccccceEEEccCc
Q 001274 634 HNN-LSGVIPYELGNL-QMLEALYLDDNQLIGEIPASMGEQMSLLVCNLSNN 683 (1109)
Q Consensus 634 ~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l~ls~N 683 (1109)
+|. +++..+..|..+ ++|+.|||++|+++ .+|.. .+..|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 663 666666777888 88888888888887 45544 5667778887765
No 339
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=5.7e-25 Score=254.96 Aligned_cols=246 Identities=19% Similarity=0.171 Sum_probs=125.0
Q ss_pred CCCccccCCCCCceEEccCCcccccCCch----hhccccceEEEcccc---cccccccccc-------cCcCCCceEEee
Q 001274 111 SIPTDLANCSSLEILDLCTNRLHGVIPFQ----LFFINTLRKLYLCEN---YIFGEIPEEI-------GNLTSLEELVIY 176 (1109)
Q Consensus 111 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~L~ 176 (1109)
.++..+..+++|++|+|++|.+++..+.. +..+++|++|+|++| .+++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 45566677777777777777777654433 445666777777664 3444445444 456666666666
Q ss_pred cCCCCC----CCCcccccccccceeccccccccCCCCccccccccchhhhcccccccccCchhhhcc---------cccc
Q 001274 177 SNNLTG----AIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKL---------RNLT 243 (1109)
Q Consensus 177 ~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l---------~~L~ 243 (1109)
+|++++ .+|..+.++++|++|+|++|.+++..+..+.. .+..+ ++|+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHHHHHHHHHHTCCCCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHHHhhhhhcccCCCCc
Confidence 666664 24455555555555555555554322222221 11111 4555
Q ss_pred ceeccccccc-CCCC---CCccccccccceeeeecccee-----cCchhhhccCccceEEeeccccc----CccCcccCC
Q 001274 244 DLILWQNHLS-GEIP---PTIGNIQSLELLALHENSFSG-----GLPKELGKLSRLKKLYVYTNELN----GTIPHELGN 310 (1109)
Q Consensus 244 ~L~L~~N~l~-~~~p---~~l~~l~~L~~L~L~~N~l~~-----~~p~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~ 310 (1109)
+|+|++|+++ +.++ ..+..+++|++|+|++|+++. ..|..+..+++|++|+|++|.++ +.+|..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 5555555554 2222 233344455555555554441 12224445555555555555553 334444555
Q ss_pred CCcCcEEEccCCcccCC----Ccccc--cCCCCcceEecccccccC----cccccc-cCCCCccEEEcccCcccCCC
Q 001274 311 CTSAVEIDLSENQLTGF----IPREL--GLIPNLCLLQLFENMLQG----SIPREL-GQLTQLHKLDLSINNLTGTI 376 (1109)
Q Consensus 311 l~~L~~L~Ls~n~l~~~----~p~~l--~~l~~L~~L~L~~n~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~ 376 (1109)
+++|++|+|++|++++. ++..+ +.+++|+.|+|++|.+++ .+|..+ .++++|++|++++|.+++..
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 55555555555555433 23333 124444555555554444 244444 33555556666665555443
No 340
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.7e-22 Score=217.51 Aligned_cols=181 Identities=23% Similarity=0.280 Sum_probs=144.9
Q ss_pred ccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEcc
Q 001274 433 KLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLS 512 (1109)
Q Consensus 433 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 512 (1109)
..+.++++++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.|++..+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4556666666666 3444443 467788888888887777778888888888888888888777778888888888888
Q ss_pred CCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceeccccccccccc
Q 001274 513 ENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAI 592 (1109)
Q Consensus 513 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 592 (1109)
+|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 88888777778888888888888888888776677788888888888888888766667888888888888888888887
Q ss_pred CcccCCCcccceeeccCccccccc
Q 001274 593 PSSLGGLARLTELQMGGNIFSGSI 616 (1109)
Q Consensus 593 p~~~~~l~~L~~L~l~~N~l~~~~ 616 (1109)
+..|..+++|+.|++++|++.+..
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTTS
T ss_pred HHHHhCCCCCCEEEeeCCceeCCc
Confidence 888888889999999999888653
No 341
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=9.4e-25 Score=253.16 Aligned_cols=249 Identities=17% Similarity=0.185 Sum_probs=146.4
Q ss_pred cchhhhcccccceeecCCccccCCCC----CCCccccccceeeccccc---ccccCCccccCCcccceeccccccccCCC
Q 001274 424 IPPHLCMYQKLIFLSLGSNRLSGNIP----PGLKTCRSLMQLMLGQNQ---LTGSLPIEFYNLQNLSALELYQNRFSGLI 496 (1109)
Q Consensus 424 ~~~~l~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 496 (1109)
++..+..+++|+.|+|++|.++...+ ..+..+++|++|+|++|. +++.+|..+.. +
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~-----------------l 86 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL-----------------L 86 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH-----------------H
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH-----------------H
Confidence 44455566666666666666654322 224445555555555532 22222322200 0
Q ss_pred CccccccccccEEEccCCccCC----CCChhhcccccccEEecccCcccccCCcCCC----CC---------CCCCeeec
Q 001274 497 PPEIGKLRNLERLHLSENYFVG----YIPSEVGNLEHLVTFNISSNSLSGTIPHELG----NC---------VNLQRLDL 559 (1109)
Q Consensus 497 p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----~l---------~~L~~L~L 559 (1109)
...+..+++|++|+|++|++++ .+|..+..+++|++|+|++|.++...+..+. .+ ++|++|+|
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 0112445555555555555554 2444555555555555555555432222222 22 56666666
Q ss_pred CCCcCc-cCCC---cccccccccceecccccccc--c---ccCcccCCCcccceeeccCcccc----ccccccccccchh
Q 001274 560 SRNQFT-GSAP---EELGQLVNLELLKLSDNKLT--G---AIPSSLGGLARLTELQMGGNIFS----GSIPVALGQLTAL 626 (1109)
Q Consensus 560 s~N~l~-~~~p---~~l~~l~~L~~L~Ls~N~l~--~---~~p~~~~~l~~L~~L~l~~N~l~----~~~p~~~~~l~~l 626 (1109)
++|+++ +.+| ..+..+++|+.|+|++|+++ | ..|..+..+++|+.|+|++|.++ +.+|..+..++.|
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 666665 2333 34555666666666666665 2 23445666666666666666664 4566666666666
Q ss_pred hhhhccCCcccccc----ccccc--cCccccceeecCCCcccc----CCchhh-hccccceEEEccCcccccccC
Q 001274 627 QIALNISHNNLSGV----IPYEL--GNLQMLEALYLDDNQLIG----EIPASM-GEQMSLLVCNLSNNNLVGTVP 690 (1109)
Q Consensus 627 ~~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~Ls~N~l~~----~ip~~~-~~l~~L~~l~ls~N~l~g~~p 690 (1109)
+ .|+|++|.+++. +|..+ +.+++|++|+|++|++++ .+|..+ .++++|++|+|++|++++..|
T Consensus 247 ~-~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 247 R-ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp C-EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred C-EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 5 377777777655 55666 448999999999999997 588888 668999999999999987654
No 342
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=7.9e-23 Score=229.18 Aligned_cols=226 Identities=20% Similarity=0.234 Sum_probs=115.3
Q ss_pred CccEEEcccCcccCCCC---cchhcccccceEEcccccccccCCCcc--cccCcCcEEEeccccccCccc----hhhhcc
Q 001274 361 QLHKLDLSINNLTGTIP---LEFQNLTYLVDLQLFDNHLEGTIPPHI--GVNSHLSVLDVSMNNLDGSIP----PHLCMY 431 (1109)
Q Consensus 361 ~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p~~~--~~~~~L~~L~Ls~N~l~~~~~----~~l~~l 431 (1109)
.++.|.+.++.++...- ..+..+++|++|++++|.+.+..|..+ ..+++|++|+|++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45666666665542110 012234557777777777777666666 667777777777777765433 233455
Q ss_pred cccceeecCCccccCCCCCCCccccccceeeccccccccc---C-CccccCCcccceeccccccccCCCCc----ccccc
Q 001274 432 QKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGS---L-PIEFYNLQNLSALELYQNRFSGLIPP----EIGKL 503 (1109)
Q Consensus 432 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~-p~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l 503 (1109)
++|++|+|++|++++..+..|..+++|++|+|++|++.+. . +..+.++++|++|+|++|+++.. +. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcC
Confidence 6666666666666655555555555555555555555431 1 11224455555555555555421 11 12344
Q ss_pred ccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecc
Q 001274 504 RNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKL 583 (1109)
Q Consensus 504 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 583 (1109)
++|++|+|++|++++..|..+..+. .+++|++|+|++|+|+ .+|..+. ++|+.|+|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~---------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCM---------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDL 279 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCC---------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred CCCCEEECCCCCCCccchhhHHhcc---------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence 4444444444444444444333331 0034555555555554 3344332 45555555
Q ss_pred cccccccccCcccCCCcccceeeccCcccc
Q 001274 584 SDNKLTGAIPSSLGGLARLTELQMGGNIFS 613 (1109)
Q Consensus 584 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 613 (1109)
++|++++. |. +..+++|+.|++++|+++
T Consensus 280 s~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 280 SSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 55555532 22 344555555555555554
No 343
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.8e-22 Score=225.66 Aligned_cols=208 Identities=24% Similarity=0.341 Sum_probs=115.3
Q ss_pred EEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCcc
Q 001274 364 KLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNR 443 (1109)
Q Consensus 364 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~ 443 (1109)
.+.+..+.+++. ..+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|+|++|+
T Consensus 23 ~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 23 KIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP 96 (308)
T ss_dssp HHHTTCSSTTSE--ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred HHHhCCCCcCce--ecHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc
Confidence 334455555432 234556677777777776663 33 45566666666666666664433 5555555555555555
Q ss_pred ccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChh
Q 001274 444 LSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSE 523 (1109)
Q Consensus 444 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 523 (1109)
+++. + .+..+++|++|+|++|++++. + .+..+++|++|++++|++++..+
T Consensus 97 l~~~--~------------------------~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-- 146 (308)
T 1h6u_A 97 LKNV--S------------------------AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-- 146 (308)
T ss_dssp CSCC--G------------------------GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--
T ss_pred CCCc--h------------------------hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--
Confidence 5532 1 344555555555555555543 1 25555555555555555554322
Q ss_pred hcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccc
Q 001274 524 VGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLT 603 (1109)
Q Consensus 524 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 603 (1109)
+..+++|++|+|++|++++..+ +..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++..+ +..+++|+
T Consensus 147 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~ 220 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLF 220 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCC
T ss_pred ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCC
Confidence 5555566666666666653322 5556666666666666653322 5556666666666666664432 55666666
Q ss_pred eeeccCcccc
Q 001274 604 ELQMGGNIFS 613 (1109)
Q Consensus 604 ~L~l~~N~l~ 613 (1109)
.|++++|+++
T Consensus 221 ~L~l~~N~i~ 230 (308)
T 1h6u_A 221 IVTLTNQTIT 230 (308)
T ss_dssp EEEEEEEEEE
T ss_pred EEEccCCeee
Confidence 6666666665
No 344
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.8e-22 Score=217.26 Aligned_cols=196 Identities=16% Similarity=0.205 Sum_probs=110.7
Q ss_pred cCcEEEeccccccCccchhhhcccccceeecCCcc-ccCCCCCCCccccccceeeccc-ccccccCCccccCCcccceec
Q 001274 409 HLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNR-LSGNIPPGLKTCRSLMQLMLGQ-NQLTGSLPIEFYNLQNLSALE 486 (1109)
Q Consensus 409 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~ 486 (1109)
+|++|++++|++++..+..|..+++|++|++++|+ ++++.+..|..+++|++|++++ |+++++.+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444455555555555555554 5444444555555566666655 555555555566666666666
Q ss_pred cccccccCCCCcccccccccc---EEEccCC-ccCCCCChhhccccccc-EEecccCcccccCCcCCCCCCCCCeeecCC
Q 001274 487 LYQNRFSGLIPPEIGKLRNLE---RLHLSEN-YFVGYIPSEVGNLEHLV-TFNISSNSLSGTIPHELGNCVNLQRLDLSR 561 (1109)
Q Consensus 487 L~~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 561 (1109)
+++|++++ +|. |..+++|+ +|++++| +++++.+..|.++++|+ +|++++|+++ .+|......++|+.|+|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 66666664 333 55555555 6666666 66655555566666666 6666666666 3333222225666666666
Q ss_pred Cc-CccCCCcccccc-cccceecccccccccccCcccCCCcccceeeccCc
Q 001274 562 NQ-FTGSAPEELGQL-VNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGN 610 (1109)
Q Consensus 562 N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 610 (1109)
|+ +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 63 665445556666 6666666666666643332 3455566665554
No 345
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=4.1e-23 Score=247.43 Aligned_cols=209 Identities=27% Similarity=0.375 Sum_probs=131.9
Q ss_pred CCCCCCCCCCCC-----cccee-eecCCeEEEEeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCce
Q 001274 51 LESWNSSDMTPC-----NWIGV-ECTDFKVTSVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEI 124 (1109)
Q Consensus 51 ~~~W~~~~~~~c-----~w~gv-~C~~~~v~~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~ 124 (1109)
+.+|... .++| .|.|+ .|...+++.++|++++|++ +|+.+. ++|+.|+|++|.++ .+| ..+++|++
T Consensus 33 l~~W~~~-~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~ 104 (571)
T 3cvr_A 33 WDKWEKQ-ALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEY 104 (571)
T ss_dssp HHHHHTT-CCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCE
T ss_pred HHHHhcc-CCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCE
Confidence 4566543 3678 79999 8987788888888888887 666553 77888888888877 566 44677777
Q ss_pred EEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccccc
Q 001274 125 LDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSL 204 (1109)
Q Consensus 125 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 204 (1109)
|+|++|++++ +|. +.. +|++|+|++|.+++ +|. .+++|++|+|++|+|++ +|. .+++|++|+|++|+|
T Consensus 105 L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 105 LDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp EECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred EEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC
Confidence 7777777776 555 443 67777777777765 554 46666666666666664 444 345566666666665
Q ss_pred cCCCCccccccccchhhhcccccccccCchhhhccccccceecccccccCCCCCCccccccc-------cceeeeeccce
Q 001274 205 SGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLSGEIPPTIGNIQSL-------ELLALHENSFS 277 (1109)
Q Consensus 205 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-------~~L~L~~N~l~ 277 (1109)
++ +|. |. ++|++|+|++|+|+ .+|. +.. +| +.|+|++|+|+
T Consensus 173 ~~-lp~-l~--------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 173 TF-LPE-LP--------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp SC-CCC-CC--------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC
T ss_pred CC-cch-hh--------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce
Confidence 53 443 33 44555555555555 3444 333 44 66666666665
Q ss_pred ecCchhhhccCccceEEeecccccCccCcccCCCC
Q 001274 278 GGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCT 312 (1109)
Q Consensus 278 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 312 (1109)
.+|..+..+++|+.|+|++|.+++.+|..+..++
T Consensus 221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred -ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 4555555666666666666666666665555443
No 346
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1e-23 Score=239.65 Aligned_cols=254 Identities=19% Similarity=0.197 Sum_probs=129.0
Q ss_pred CCceEEccCCcccccCCchhhcc--ccceEEEcccccccccccccccCcCCCceEEeecCCCCCC-CCccccccccccee
Q 001274 121 SLEILDLCTNRLHGVIPFQLFFI--NTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGA-IPASISKLRQLRVI 197 (1109)
Q Consensus 121 ~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L 197 (1109)
.++.||+++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.+++. +|..+.++++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777777765 3445555 6677777777777655444 44566666666666666544 55555666666666
Q ss_pred ccccccccCCCCccccccccchhhhcccc-cccc-cCchhhhccccccceecccc-cccCCCCCCccccccccceeeeec
Q 001274 198 RAGHNSLSGPIPPEISECEGLEVLGLAQN-SLEG-FLPSELEKLRNLTDLILWQN-HLSGEIPPTIGNIQSLELLALHEN 274 (1109)
Q Consensus 198 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N 274 (1109)
++++|.+++..+..++.+++|++|+|++| .+++ .++..+.++++|++|+|++| .+++.
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------- 184 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------------- 184 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-------------------
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-------------------
Confidence 66666655555555555555555555555 3443 13444444555555555554 44422
Q ss_pred cceecCchhhhccC-ccceEEeecc--ccc-CccCcccCCCCcCcEEEccCCc-ccCCCcccccCCCCcceEeccccc-c
Q 001274 275 SFSGGLPKELGKLS-RLKKLYVYTN--ELN-GTIPHELGNCTSAVEIDLSENQ-LTGFIPRELGLIPNLCLLQLFENM-L 348 (1109)
Q Consensus 275 ~l~~~~p~~l~~l~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~-l 348 (1109)
.++..+..++ +|++|++++| .++ +.++..+.++++|++|+|++|. +++..+..+..+++|+.|++++|. +
T Consensus 185 ----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 185 ----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp ----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred ----HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 0233344444 4444444444 222 2233333444444444444444 333333334444444444444442 1
Q ss_pred cCcccccccCCCCccEEEcccCcccCCCCcchhccc-ccceEEcccccccccCCCccc
Q 001274 349 QGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLT-YLVDLQLFDNHLEGTIPPHIG 405 (1109)
Q Consensus 349 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~ 405 (1109)
.......+.++++|++|++++| ++ ...+..+. .+..|++++|++++..|..++
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCccc
Confidence 1111124555666666666666 32 12233332 255555666666655555443
No 347
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=7.4e-22 Score=220.73 Aligned_cols=208 Identities=25% Similarity=0.335 Sum_probs=144.8
Q ss_pred eEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEecccc
Q 001274 340 LLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNN 419 (1109)
Q Consensus 340 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~ 419 (1109)
.+.+..+.+.+.+ .+..+++|++|++++|.++. ++ .+..+++|+.|+|++|.+++..+ +..+++|++|++++|+
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP 96 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc
Confidence 3344445444432 35568899999999999984 45 68999999999999999996555 8999999999999999
Q ss_pred ccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCcc
Q 001274 420 LDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPE 499 (1109)
Q Consensus 420 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 499 (1109)
+.+. +.+..+++|++|++++|++++.. .+..+++|++|++++|++++..+ +.++++|++|+|++|++++..+
T Consensus 97 l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-- 168 (308)
T 1h6u_A 97 LKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-- 168 (308)
T ss_dssp CSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred CCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--
Confidence 9864 36888999999999999988643 26666777777777777765433 5666666666666666665422
Q ss_pred ccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCc
Q 001274 500 IGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFT 565 (1109)
Q Consensus 500 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 565 (1109)
+..+++|+.|++++|++++..+ +..+++|++|+|++|++++..| +..+++|+.|+|++|+++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 5666666666666666654322 5555666666666666654332 555555666666666555
No 348
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.3e-21 Score=205.53 Aligned_cols=185 Identities=22% Similarity=0.236 Sum_probs=137.7
Q ss_pred CCccceeeecCCeEEEEeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCceEEccCCcccccCCchh
Q 001274 61 PCNWIGVECTDFKVTSVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQL 140 (1109)
Q Consensus 61 ~c~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l 140 (1109)
.|.|.+|.|+....+. +|..+ .++|++|++++|.+++..+..++++++|++|+|++|++++..+..+
T Consensus 6 ~C~~~~v~c~~~~l~~-----------~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 72 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTS-----------VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF 72 (208)
T ss_dssp EEETTEEECCSSCCSS-----------CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred EECCCEEEecCCCccC-----------CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhc
Confidence 4899999997643322 22222 3578889999998887767778888899999999888886666667
Q ss_pred hccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccccccCCCCccccccccchh
Q 001274 141 FFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEV 220 (1109)
Q Consensus 141 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 220 (1109)
..+++|++|+|++|.+++..+..++++++|++|+|++|++++..+..+.++++|++|++++|.+++..+..+..+++|++
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 78888888888888888666666788888888888888888666666778888888888888887665556777777777
Q ss_pred hhcccccccccCchhhhccccccceecccccccCCCCCCcccccc
Q 001274 221 LGLAQNSLEGFLPSELEKLRNLTDLILWQNHLSGEIPPTIGNIQS 265 (1109)
Q Consensus 221 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 265 (1109)
|+|++|.+.+ .+++|++|+++.|+++|.+|.+++.++.
T Consensus 153 L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 153 IWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp EECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred EEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 7777776654 3446777777777777777777665543
No 349
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=2.4e-21 Score=221.03 Aligned_cols=181 Identities=18% Similarity=0.110 Sum_probs=83.3
Q ss_pred CcceEecccccccCcccccccCCCCccEEEcccCcccCCCC-cchhcccccce-EEcccccccccCCCcccccCcCcEEE
Q 001274 337 NLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIP-LEFQNLTYLVD-LQLFDNHLEGTIPPHIGVNSHLSVLD 414 (1109)
Q Consensus 337 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~~~~L~~L~ 414 (1109)
+++.|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.+..|+++...|..|..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 34444444444443333455555666666666666543333 34555555443 34444555555555555555555555
Q ss_pred eccccccCccchhhhcccccceeecCC-ccccCCCCCCCcccc-ccceeecccccccccCCccccCCcccceecccc-cc
Q 001274 415 VSMNNLDGSIPPHLCMYQKLIFLSLGS-NRLSGNIPPGLKTCR-SLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQ-NR 491 (1109)
Q Consensus 415 Ls~N~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~ 491 (1109)
+++|++....+..+....++..|++.+ |++..+.+..|..+. .++.|+|++|+|+.+.+..| ...+|++|++++ |.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTT
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCc
Confidence 555555544444444444455555433 344433333343332 24444444444443322222 223344444432 33
Q ss_pred ccCCCCccccccccccEEEccCCccCC
Q 001274 492 FSGLIPPEIGKLRNLERLHLSENYFVG 518 (1109)
Q Consensus 492 l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 518 (1109)
++.+.++.|..+++|++|+|++|+|+.
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCc
Confidence 333333334444444444444444443
No 350
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=3.1e-21 Score=220.10 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=23.9
Q ss_pred eEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccc
Q 001274 388 DLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRL 444 (1109)
Q Consensus 388 ~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l 444 (1109)
.++.++++++ .+|..+ .+++++|+|++|+|+.+.+..|.++++|++|+|++|++
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i 66 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC
Confidence 3444555554 334333 23444455555544433333444444444444444444
No 351
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.84 E-value=8.5e-22 Score=216.51 Aligned_cols=164 Identities=18% Similarity=0.125 Sum_probs=125.8
Q ss_pred HHHHhcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCc----------------chhHHHHHHHHHhccCCCC
Q 001274 797 LLEATGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGA----------------TADNSFLAEISTLGKIRHR 860 (1109)
Q Consensus 797 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~----------------~~~~~~~~E~~~l~~l~h~ 860 (1109)
+......|.+.+.||+|+||.||+|++.+|+.||||+++...... .....+.+|++++++++|
T Consensus 85 ~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~- 163 (282)
T 1zar_A 85 LVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG- 163 (282)
T ss_dssp HHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT-
T ss_pred HHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC-
Confidence 334455666779999999999999999779999999996432111 134568899999999984
Q ss_pred ceeeEEEEEEeCCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeC
Q 001274 861 NIVKLYGFCYHQDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLD 940 (1109)
Q Consensus 861 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~ 940 (1109)
+++.+++.. +..++||||+++|+|.+ +.. .....++.|++.||.||| +.+|+||||||+|||++
T Consensus 164 --~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~---------~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~ 227 (282)
T 1zar_A 164 --LAVPKVYAW-EGNAVLMELIDAKELYR-VRV---------ENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS 227 (282)
T ss_dssp --SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC---------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE
T ss_pred --CCcCeEEec-cceEEEEEecCCCcHHH-cch---------hhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE
Confidence 555554433 56699999999999988 421 124579999999999999 77999999999999999
Q ss_pred CCCceEEeeccccccccCCCCCCccccccccceeccccccC----------CCCCccchhHH
Q 001274 941 EEFQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYT----------MKVTEKCDIYS 992 (1109)
Q Consensus 941 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~----------~~~~~~~DvwS 992 (1109)
++.+||+|||+|+... .|.|||++.+ .+|+.++|+|.
T Consensus 228 -~~~vkl~DFG~a~~~~--------------~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~ 274 (282)
T 1zar_A 228 -EEGIWIIDFPQSVEVG--------------EEGWREILERDVRNIITYFSRTYRTEKDINS 274 (282)
T ss_dssp -TTEEEECCCTTCEETT--------------STTHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred -CCcEEEEECCCCeECC--------------CCCHHHHHHHHHHHHHHHHHHhcCCCCChHH
Confidence 9999999999997432 3788997653 34555556654
No 352
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.84 E-value=6.1e-22 Score=246.50 Aligned_cols=230 Identities=19% Similarity=0.212 Sum_probs=135.9
Q ss_pred CchhHHHHHHHHHHhcC-CCCCCCCCCCCCCCCCCccceeeecCCeEEEEeccCccccccccccccCccccceeecccCc
Q 001274 29 SLTEEGVSLLEFKASLI-DPSNNLESWNSSDMTPCNWIGVECTDFKVTSVDLHGLNLSGILSPRICDLPRLVEFNISMNF 107 (1109)
Q Consensus 29 ~~~~~~~all~~k~~~~-~~~~~~~~W~~~~~~~c~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~ 107 (1109)
....+++||+++...+. +.+..-++|......++.|.+++++..+++.++|.++++... +..+ |+.++|+.|.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~ 202 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFANGKDEA-NQAL-----LQHKKLSQYS 202 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecCCccceEEeeCCCCCcc-hhhH-----hhcCccCccc
Confidence 34567899999998873 334456678665556789999999999999999999988763 3333 3344444444
Q ss_pred cCC---------CCCccccCCCCCceEEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecC
Q 001274 108 VTG---------SIPTDLANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSN 178 (1109)
Q Consensus 108 ~~~---------~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 178 (1109)
+.+ ..|..+..++.|++|+|++|.+. .+|..++.+++|++|+|++|.|+ .+|..|+++++|++|+|++|
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence 333 44778899999999999999998 78888889999999999999998 88999999999999999999
Q ss_pred CCCCCCCcccccccccceeccccccccCCCCccccccccchhhhcccccccccCchhhhcccc-ccceecccccccCCCC
Q 001274 179 NLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRN-LTDLILWQNHLSGEIP 257 (1109)
Q Consensus 179 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~p 257 (1109)
+|+ .+|..|++|++|++|+|++|.|+ .+|..|+++++|++|+|++|.|++.+|..+..+.. +..|+|++|.+++.+|
T Consensus 281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 281 RLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred cCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 999 88999999999999999999997 78888999999999999999999988888876543 3457899999998887
Q ss_pred CCccccccccceeeeec
Q 001274 258 PTIGNIQSLELLALHEN 274 (1109)
Q Consensus 258 ~~l~~l~~L~~L~L~~N 274 (1109)
.. |+.|+++.|
T Consensus 359 ~~------l~~l~l~~n 369 (727)
T 4b8c_D 359 HE------RRFIEINTD 369 (727)
T ss_dssp CC---------------
T ss_pred cc------cceeEeecc
Confidence 64 455666666
No 353
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=2.1e-20 Score=196.39 Aligned_cols=162 Identities=23% Similarity=0.222 Sum_probs=85.8
Q ss_pred ccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecc
Q 001274 457 SLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNIS 536 (1109)
Q Consensus 457 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 536 (1109)
+|++|++++|++++..+..|.++++|++|+|++|+++++.+..|..+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444444444444555555555555555554444445555555555555555554444445555555555555
Q ss_pred cCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCccccccc
Q 001274 537 SNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSI 616 (1109)
Q Consensus 537 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 616 (1109)
+|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.+ .+++|+.|+++.|.++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 555554444445555555555555555554444445555555555555555442 2345556666666666666
Q ss_pred cccccccch
Q 001274 617 PVALGQLTA 625 (1109)
Q Consensus 617 p~~~~~l~~ 625 (1109)
|..++.+..
T Consensus 182 p~~~~~l~~ 190 (208)
T 2o6s_A 182 RNSAGSVAP 190 (208)
T ss_dssp BCTTSSBCT
T ss_pred eccCccccC
Confidence 666555443
No 354
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.3e-20 Score=225.69 Aligned_cols=168 Identities=26% Similarity=0.350 Sum_probs=103.7
Q ss_pred ccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEcc
Q 001274 433 KLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLS 512 (1109)
Q Consensus 433 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 512 (1109)
+|++|+|++|+|+ .+| ..+++|++|+|++|++++ +|. |.+ +|++|+|++|+|++ +|. .+++|+.|+|+
T Consensus 81 ~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 81 QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINAD 148 (571)
T ss_dssp TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCC
Confidence 3444444444444 222 223455555555555554 333 433 66666666666665 333 45667777777
Q ss_pred CCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCccccccccc-------ceecccc
Q 001274 513 ENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNL-------ELLKLSD 585 (1109)
Q Consensus 513 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~ 585 (1109)
+|+|++ +|. .+++|++|+|++|+|++ +|. |. ++|+.|+|++|+|+ .+|. |.. +| +.|+|++
T Consensus 149 ~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 149 NNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred CCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence 777765 443 45677777777777774 555 54 67777777777777 4555 444 56 7778888
Q ss_pred cccccccCcccCCCcccceeeccCccccccccccccccch
Q 001274 586 NKLTGAIPSSLGGLARLTELQMGGNIFSGSIPVALGQLTA 625 (1109)
Q Consensus 586 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~ 625 (1109)
|+|+ .+|..+..+++|+.|+|++|++++.+|..+.++..
T Consensus 217 N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred Ccce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 8777 46666666788888888888888777777766554
No 355
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=9.5e-20 Score=220.94 Aligned_cols=191 Identities=21% Similarity=0.295 Sum_probs=94.4
Q ss_pred cccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeec
Q 001274 384 TYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLML 463 (1109)
Q Consensus 384 ~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 463 (1109)
..+..+.+..+.+.+..+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|+|++..
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~--------------- 81 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--------------- 81 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCG---------------
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCCh---------------
Confidence 334445555555543322 34455555555555555432 1 3444555555555555554433
Q ss_pred ccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCccccc
Q 001274 464 GQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGT 543 (1109)
Q Consensus 464 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 543 (1109)
+ |..+++|+.|+|++|.|+++ +.+..+++|+.|+|++|+|.+. ..+..+++|+.|+|++|+|++.
T Consensus 82 ---------~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l 146 (605)
T 1m9s_A 82 ---------P--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI 146 (605)
T ss_dssp ---------G--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred ---------h--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc
Confidence 3 44445555555555555432 2344555555555555555432 2345555555555555555532
Q ss_pred CCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCccccc
Q 001274 544 IPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSG 614 (1109)
Q Consensus 544 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 614 (1109)
..+..+++|+.|+|++|+|++..| +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|++.+
T Consensus 147 --~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 147 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred --hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 344555555555555555554333 55555555555555555542 235555555555555555553
No 356
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1e-19 Score=201.45 Aligned_cols=188 Identities=22% Similarity=0.316 Sum_probs=102.0
Q ss_pred cceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeeccc
Q 001274 386 LVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQ 465 (1109)
Q Consensus 386 L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 465 (1109)
+..+.+..+.+.+.. .+..+++|++|++++|.+... +.+..+++|++|++++|++++..+ +..+++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 444445555554322 234566677777777766643 235566666666666666665433 55556666666666
Q ss_pred ccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCC
Q 001274 466 NQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIP 545 (1109)
Q Consensus 466 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 545 (1109)
|++++. ..+.++++|++|+|++|++++. +.+..+++|+.|++++|++++. ..+..+++|+.|+|++|++++..|
T Consensus 100 n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 100 NKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp SCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 665542 1255555555555555555543 3455555555555555555543 345555555555555555554333
Q ss_pred cCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccc
Q 001274 546 HELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLT 589 (1109)
Q Consensus 546 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 589 (1109)
+..+++|+.|+|++|+|++ +| .+..+++|+.|++++|+++
T Consensus 174 --l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred --hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 5555555555555555553 22 2555555555555555554
No 357
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.2e-19 Score=220.02 Aligned_cols=191 Identities=21% Similarity=0.312 Sum_probs=120.1
Q ss_pred CCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceee
Q 001274 359 LTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLS 438 (1109)
Q Consensus 359 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 438 (1109)
+..+..+.++.+.+.+.. .+..++.|+.|++++|.+.. ++ .+..+++|+.|+|++|+|.+..+ +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 445667788888887544 36789999999999999985 34 58999999999999999998765 89999999999
Q ss_pred cCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCC
Q 001274 439 LGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVG 518 (1109)
Q Consensus 439 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 518 (1109)
|++|.|++. +.+..+++|++|+|++|++.+. ..+..+++|+.|+|++|+++++ ..+..+++|+.|+|++|+|++
T Consensus 94 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 999998753 2556666666666666666542 2344455555555555555443 334444444444444444444
Q ss_pred CCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCc
Q 001274 519 YIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFT 565 (1109)
Q Consensus 519 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 565 (1109)
..| +..+++|+.|+|++|+|++. | .+..+++|+.|+|++|+++
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEE
T ss_pred chh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCc
Confidence 333 44444444444444444422 1 2444444444444444443
No 358
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=190.79 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=96.6
Q ss_pred cEEEccCCccCCCCChhhcccccccEEecccCcccccCC-cCCCCCCCCCeeecCCCcCccCCCcccccccccceecccc
Q 001274 507 ERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIP-HELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSD 585 (1109)
Q Consensus 507 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 585 (1109)
+.+++++|.++. +|..+. +.+++|+|++|+|++..| ..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 356666666653 344332 234556666666654433 3355555566666666655554444555555555555555
Q ss_pred cccccccCcccCCCcccceeeccCccccccccccccccchhhhhhccCCccccccccccccCccccceeecCCCccccCC
Q 001274 586 NKLTGAIPSSLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEI 665 (1109)
Q Consensus 586 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i 665 (1109)
|++++..+..|.++++|++| +|++|+|++..|..|..+++|+.|+|++|+|++.+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L-------------------------~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTL-------------------------MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEE-------------------------ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred CccCccCHhHhcCCcCCCEE-------------------------ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 55555555555555555555 45555555566667777777888888888888777
Q ss_pred chhhhccccceEEEccCcccccccCC
Q 001274 666 PASMGEQMSLLVCNLSNNNLVGTVPN 691 (1109)
Q Consensus 666 p~~~~~l~~L~~l~ls~N~l~g~~p~ 691 (1109)
|..|..+++|++|+|++|++.|.++-
T Consensus 146 ~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred HHHhcCCCCCCEEEecCcCCcCCCch
Confidence 77788888888888888888877664
No 359
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.4e-19 Score=200.36 Aligned_cols=170 Identities=25% Similarity=0.348 Sum_probs=79.0
Q ss_pred cccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEE
Q 001274 430 MYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERL 509 (1109)
Q Consensus 430 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 509 (1109)
.+++|+.|++++|.++.. +.+..+++|++|++++|++++..+ +.++++|++|+|++|++++. +.+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 344455555555544432 224444455555555555544333 44445555555555554432 224444555555
Q ss_pred EccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccc
Q 001274 510 HLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLT 589 (1109)
Q Consensus 510 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 589 (1109)
++++|++++. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|+++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 5555554432 2344445555555555555432 334444555555555555543222 444455555555555544
Q ss_pred cccCcccCCCcccceeeccCcccc
Q 001274 590 GAIPSSLGGLARLTELQMGGNIFS 613 (1109)
Q Consensus 590 ~~~p~~~~~l~~L~~L~l~~N~l~ 613 (1109)
+. | .+..+++|+.|++++|++.
T Consensus 192 ~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 DL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp BC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CC-h-hhccCCCCCEEECcCCccc
Confidence 32 2 2444455555555555444
No 360
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=7.5e-20 Score=227.69 Aligned_cols=228 Identities=22% Similarity=0.227 Sum_probs=129.7
Q ss_pred cccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEc
Q 001274 432 QKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHL 511 (1109)
Q Consensus 432 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 511 (1109)
+.++.|+|.+|.+... + ...|+.++|+.|.|. .++++.|++. ..|+.|..+++|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~~-~-----~~~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-N-----QALLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcc-h-----hhHhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEEC
Confidence 3456666666666542 1 122444555555444 2345566666 56788999999999999
Q ss_pred cCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccc
Q 001274 512 SENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGA 591 (1109)
Q Consensus 512 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 591 (1109)
++|++. .+|..+.++++|++|+|++|+|+ .+|..|+++++|++|+|++|+|+ .+|..|+.+++|++|+|++|.|+ .
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence 999998 57777779999999999999999 88999999999999999999999 78999999999999999999997 6
Q ss_pred cCcccCCCcccceeeccCccccccccccccccchhhhhhccCCccccccccccccCccccceeecCCC--------cccc
Q 001274 592 IPSSLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVIPYELGNLQMLEALYLDDN--------QLIG 663 (1109)
Q Consensus 592 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~ 663 (1109)
+|..|+.+++|+.|+|++|+|++.+|..+..+......++|++|.++|.+|. .|+.|++++| .|.+
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~ 381 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQ 381 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------------------
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccc
Confidence 7888999999999999999999999999988766655689999999999886 4566778777 4555
Q ss_pred CCchhhhccccceEEEccCcccccccC
Q 001274 664 EIPASMGEQMSLLVCNLSNNNLVGTVP 690 (1109)
Q Consensus 664 ~ip~~~~~l~~L~~l~ls~N~l~g~~p 690 (1109)
.++..+.++..+....+++|-+.+...
T Consensus 382 ~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 382 STEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp --------------------CCCGGGC
T ss_pred cccchhhcccccceeeeeccccccccC
Confidence 555556667777777888887765433
No 361
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=3.2e-19 Score=204.16 Aligned_cols=176 Identities=26% Similarity=0.233 Sum_probs=121.0
Q ss_pred eeecCCccccCCCCCCCccccccceeecccccccccCCcccc-CCcccceeccccccccCCCCccccccccccEEEccCC
Q 001274 436 FLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFY-NLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSEN 514 (1109)
Q Consensus 436 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 514 (1109)
.+++++|.++. +|..+. +.++.|+|++|+|++..+..|. ++++|++|+|++|+|+++.+..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 45555555553 333332 2466677777777766666666 7777777777777777776667777777777777777
Q ss_pred ccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCccc---ccccccceecccccccccc
Q 001274 515 YFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEEL---GQLVNLELLKLSDNKLTGA 591 (1109)
Q Consensus 515 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~ 591 (1109)
+|+++.+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|+|++|+|++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 7776666677777777777777777777667777777777777777777775333334 4577777777777777766
Q ss_pred cCcccCCCcc--cceeeccCccccc
Q 001274 592 IPSSLGGLAR--LTELQMGGNIFSG 614 (1109)
Q Consensus 592 ~p~~~~~l~~--L~~L~l~~N~l~~ 614 (1109)
.+..|..++. ++.|+|++|++..
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CHHHhhhccHhhcceEEecCCCccC
Confidence 6666776766 3777888887764
No 362
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=6.9e-19 Score=187.47 Aligned_cols=156 Identities=21% Similarity=0.189 Sum_probs=101.3
Q ss_pred CCCccceeeecCCeEEEEeccCccccccccccccCccccceeecccCccCCCCCccccCCCCCceEEccCCcccccCCch
Q 001274 60 TPCNWIGVECTDFKVTSVDLHGLNLSGILSPRICDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQ 139 (1109)
Q Consensus 60 ~~c~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 139 (1109)
+.|.|.+|.|+..+++ .+|..+. ++|+.|+|++|.+++..|..++++++|++|+|++|+++...+..
T Consensus 17 ~~Cs~~~v~c~~~~l~-----------~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 83 (229)
T 3e6j_A 17 CSCSGTTVDCRSKRHA-----------SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV 83 (229)
T ss_dssp CEEETTEEECTTSCCS-----------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CEEeCCEeEccCCCcC-----------ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh
Confidence 6799999999754322 2333332 67788888888888777777777888888888888776544455
Q ss_pred hhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccccccCCCCccccccccch
Q 001274 140 LFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLE 219 (1109)
Q Consensus 140 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 219 (1109)
+..+++|++|+|++|.+++..+..+..+++|++|+|++|+|+ .+|..+.++++|++|+|++|+|++..+..|..+++|+
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 566667777777777666555555666666666666666666 5566666666666666666666544444455555555
Q ss_pred hhhccccccc
Q 001274 220 VLGLAQNSLE 229 (1109)
Q Consensus 220 ~L~L~~n~l~ 229 (1109)
+|+|++|.+.
T Consensus 163 ~L~l~~N~~~ 172 (229)
T 3e6j_A 163 HAYLFGNPWD 172 (229)
T ss_dssp EEECTTSCBC
T ss_pred EEEeeCCCcc
Confidence 5555555544
No 363
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=1.4e-19 Score=196.96 Aligned_cols=169 Identities=22% Similarity=0.327 Sum_probs=88.4
Q ss_pred cccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEc
Q 001274 432 QKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHL 511 (1109)
Q Consensus 432 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 511 (1109)
.++..+++++|.+++.. .+..+++|++|++++|+++. ++ .+..+++|++|+|++|++++..+ +..+++|++|+|
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 33444444444444322 34444445555555554442 22 34555555555555555554432 555555555555
Q ss_pred cCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccc
Q 001274 512 SENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGA 591 (1109)
Q Consensus 512 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 591 (1109)
++|++++. |. +.. ++|++|+|++|++++. + .+..+++|+.|+|++|+|++. + .+..+++|+.|+|++|++++.
T Consensus 93 ~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 55555542 22 112 5566666666666532 2 355566666666666666542 2 455666666666666666554
Q ss_pred cCcccCCCcccceeeccCcccccc
Q 001274 592 IPSSLGGLARLTELQMGGNIFSGS 615 (1109)
Q Consensus 592 ~p~~~~~l~~L~~L~l~~N~l~~~ 615 (1109)
..+..+++|+.|++++|++.+.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 4555666666666666666544
No 364
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=6.5e-19 Score=186.32 Aligned_cols=155 Identities=22% Similarity=0.264 Sum_probs=95.2
Q ss_pred eeecccccccccCCccccCCcccceeccccccccCCCC-ccccccccccEEEccCCccCCCCChhhcccccccEEecccC
Q 001274 460 QLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIP-PEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSN 538 (1109)
Q Consensus 460 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 538 (1109)
.+++++|.++. +|..+. ..+++|+|++|+|++..+ ..|..+++|++|+|++|+|+++.+..|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 44444444442 233221 234556666666655533 34566666666666666666555556666666666666666
Q ss_pred cccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCcccccccc
Q 001274 539 SLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIP 617 (1109)
Q Consensus 539 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 617 (1109)
+|++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++.+..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 6665555556666666666666666666666666666667777777777766666777777777777777777765443
No 365
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=4.2e-19 Score=203.23 Aligned_cols=182 Identities=23% Similarity=0.203 Sum_probs=130.4
Q ss_pred ceeccccccccCCCCccccccccccEEEccCCccCCCCChhhc-ccccccEEecccCcccccCCcCCCCCCCCCeeecCC
Q 001274 483 SALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVG-NLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSR 561 (1109)
Q Consensus 483 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 561 (1109)
+.+++++|.++. +|..+. +.++.|+|++|+|++..+..+. ++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578888888875 455444 3578888888888877777776 788888888888888877777788888888888888
Q ss_pred CcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCccccccccccccccchhhhhhccCCccccccc
Q 001274 562 NQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALNISHNNLSGVI 641 (1109)
Q Consensus 562 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~Ls~N~l~~~~ 641 (1109)
|+|++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|.+++ +|..+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~-------------------- 156 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELI-------------------- 156 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGT--------------------
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHh--------------------
Confidence 88887666678888888888888888887777788888888888777777763 222210
Q ss_pred cccccCccccceeecCCCccccCCchhhhcccc--ceEEEccCccccccc
Q 001274 642 PYELGNLQMLEALYLDDNQLIGEIPASMGEQMS--LLVCNLSNNNLVGTV 689 (1109)
Q Consensus 642 p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~--L~~l~ls~N~l~g~~ 689 (1109)
..+..+++|+.|||++|+|++..+..+..++. ++.|+|++|++.|..
T Consensus 157 -~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 157 -KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp -C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred -cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 00145667777777777777544466666665 366777777777654
No 366
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=8.6e-19 Score=185.40 Aligned_cols=152 Identities=22% Similarity=0.302 Sum_probs=99.1
Q ss_pred eeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCc
Q 001274 460 QLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNS 539 (1109)
Q Consensus 460 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 539 (1109)
.+++++|.++. +|..+. ++|+.|+|++|+|+++.+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 34444555442 233222 456666666666666555566666666666666666666666666666667777777777
Q ss_pred ccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCccccc
Q 001274 540 LSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSG 614 (1109)
Q Consensus 540 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 614 (1109)
|+...+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 665555556667777777777777776666667777777777777777776666677777777777777777764
No 367
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=7.9e-21 Score=229.13 Aligned_cols=216 Identities=21% Similarity=0.182 Sum_probs=143.4
Q ss_pred cCCCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccce
Q 001274 357 GQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIF 436 (1109)
Q Consensus 357 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 436 (1109)
...++|+.|+|++|+++ .+|..++++++|+.|++++|......|. .+..+.+.+..|..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhccc
Confidence 55677888888888887 6777788888888887766542111111 01122344566777777777777
Q ss_pred ee-cCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCc
Q 001274 437 LS-LGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENY 515 (1109)
Q Consensus 437 L~-L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 515 (1109)
|+ ++.|.+ .+|..+.+++|.++...+ ..|+.|+|++|.|+++ |. |+.+++|+.|+|++|+
T Consensus 414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HCGGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSC
T ss_pred Ccchhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCCC-cC-ccccccCcEeecCccc
Confidence 77 666644 356667777777764332 2367777777777763 44 7777777777777777
Q ss_pred cCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCC-CcccccccccceecccccccccccCc
Q 001274 516 FVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSA-PEELGQLVNLELLKLSDNKLTGAIPS 594 (1109)
Q Consensus 516 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~ 594 (1109)
|+ .+|..++++++|+.|+|++|+|++ +| .++++++|+.|+|++|+|++.. |..|..+++|+.|+|++|++++.+|.
T Consensus 475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 77 567777777777777777777774 55 6777777777777777777655 77777777777777777777765442
Q ss_pred c---cCCCcccceee
Q 001274 595 S---LGGLARLTELQ 606 (1109)
Q Consensus 595 ~---~~~l~~L~~L~ 606 (1109)
. +..+++|+.|+
T Consensus 552 ~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 552 QERLAEMLPSVSSIL 566 (567)
T ss_dssp TTHHHHHCTTCSEEE
T ss_pred HHHHHHHCcccCccC
Confidence 1 22356666654
No 368
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=1.3e-18 Score=184.10 Aligned_cols=151 Identities=23% Similarity=0.290 Sum_probs=106.0
Q ss_pred eeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCc
Q 001274 436 FLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENY 515 (1109)
Q Consensus 436 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 515 (1109)
.+++++|.++. +|..+. ++|++|++++|+++++.+..|.++++|++|+|++|+|+++.|..|.++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 44555555552 333332 456677777777776666677777777777777777777767777777777777777777
Q ss_pred cCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccc
Q 001274 516 FVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLT 589 (1109)
Q Consensus 516 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 589 (1109)
|+++.+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77665666677777777777777777777777777777777777777777666666777777777777777775
No 369
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=4.1e-20 Score=222.92 Aligned_cols=201 Identities=19% Similarity=0.167 Sum_probs=111.8
Q ss_pred cCcCCCceEEeecCCCCCCCCcccccccccceeccccccccCCCCccccccccchhhhcccccccccCchhhhccccccc
Q 001274 165 GNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTD 244 (1109)
Q Consensus 165 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 244 (1109)
..+++|+.|+|++|+++ .+|.+++++++|+.|++++|..... +.. .+..+.+.+..|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~----------l~~-ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLT----------IIL-LMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHH----------HHH-HHHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhh----------HHH-HHHhcccccCCHHHHHHHHhccc
Confidence 34455555555555554 4555555555555555544321100 000 01111245566777777777777
Q ss_pred ee-cccccccCCCCCCccccccccceeeeeccceecCchhhhccCccceEEeecccccCccCcccCCCCcCcEEEccCCc
Q 001274 245 LI-LWQNHLSGEIPPTIGNIQSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQ 323 (1109)
Q Consensus 245 L~-L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 323 (1109)
|+ ++.|++ ..|+.+.+++|.++...+ ..|+.|++++|.|++ +|. ++++++|++|+|++|+
T Consensus 414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HCGGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred Ccchhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence 77 666654 356666777777664322 136677777777764 454 6667777777777777
Q ss_pred ccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCC-CcchhcccccceEEccccccccc
Q 001274 324 LTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTI-PLEFQNLTYLVDLQLFDNHLEGT 399 (1109)
Q Consensus 324 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~ 399 (1109)
|+ .+|..++.+++|+.|+|++|.+++ +| .++.+++|++|+|++|+|++.. |..|.++++|+.|+|++|.+++.
T Consensus 475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 66 445555555555555555555554 33 5555555566666655555444 55555555555555555555543
No 370
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=2.7e-18 Score=182.86 Aligned_cols=156 Identities=22% Similarity=0.257 Sum_probs=126.3
Q ss_pred cceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEeccc
Q 001274 458 LMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISS 537 (1109)
Q Consensus 458 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 537 (1109)
.+.+++++++++. +|..+. ++|++|+|++|+|+++.|..|..+++|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4556666766663 443332 7788888888888888788888888888888888888876667788888888888888
Q ss_pred CcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCcccccccc
Q 001274 538 NSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIP 617 (1109)
Q Consensus 538 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 617 (1109)
|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.+..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8888777777888888999999999988 678888888999999999999987777888889999999999998886543
No 371
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=2.5e-18 Score=187.17 Aligned_cols=80 Identities=24% Similarity=0.307 Sum_probs=35.2
Q ss_pred cccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeec
Q 001274 480 QNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDL 559 (1109)
Q Consensus 480 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 559 (1109)
++|++|+|++|++++. +.+..+++|+.|+|++|++++. + .+..+++|++|+|++|++++. ..+..+++|+.|++
T Consensus 106 ~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDL 179 (263)
T ss_dssp SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEE
T ss_pred CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeC
Confidence 3444444444444432 2344444444444444444432 1 344444444444444444433 33444444444444
Q ss_pred CCCcCc
Q 001274 560 SRNQFT 565 (1109)
Q Consensus 560 s~N~l~ 565 (1109)
++|.++
T Consensus 180 ~~N~~~ 185 (263)
T 1xeu_A 180 TGQKCV 185 (263)
T ss_dssp EEEEEE
T ss_pred CCCccc
Confidence 444444
No 372
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=3.7e-17 Score=168.90 Aligned_cols=132 Identities=25% Similarity=0.386 Sum_probs=88.9
Q ss_pred ceeccccccccCCCCccccccccccEEEccCCccCCCCCh-hhcccccccEEecccCcccccCCcCCCCCCCCCeeecCC
Q 001274 483 SALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPS-EVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSR 561 (1109)
Q Consensus 483 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 561 (1109)
+++++++|.++. +|..+.. +|++|++++|+|++..+. .|+.+++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 455555555542 3443332 566666666666655543 366677777777777777766667777777777777777
Q ss_pred CcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCcccccccc
Q 001274 562 NQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIP 617 (1109)
Q Consensus 562 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 617 (1109)
|+|++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 77776666667777777777777777777777777777777778888887776654
No 373
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=1.1e-17 Score=173.86 Aligned_cols=153 Identities=17% Similarity=0.308 Sum_probs=67.8
Q ss_pred cCCCCCceEEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccce
Q 001274 117 ANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRV 196 (1109)
Q Consensus 117 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 196 (1109)
+.+++|++|++++|.+. .+| .+..+++|++|++++|.++ .++.++.+++|++|++++|++++..|..++++++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44444555555555444 233 3444444444444444332 1224444455555555555554444444444444444
Q ss_pred eccccccccCCCCccccccccchhhhcccccccccCchhhhccccccceeccccc-ccCCCCCCccccccccceeeeecc
Q 001274 197 IRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNH-LSGEIPPTIGNIQSLELLALHENS 275 (1109)
Q Consensus 197 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~ 275 (1109)
|++++|.+++.. |..+..+++|++|+|++|+ ++ .+| .+..+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~------------------------~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 117 LDISHSAHDDSI------------------------LTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp EECCSSBCBGGG------------------------HHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBC
T ss_pred EEecCCccCcHh------------------------HHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCC
Confidence 444444444333 3444444444444444444 32 222 34444444444444444
Q ss_pred ceecCchhhhccCccceEEeeccccc
Q 001274 276 FSGGLPKELGKLSRLKKLYVYTNELN 301 (1109)
Q Consensus 276 l~~~~p~~l~~l~~L~~L~l~~n~l~ 301 (1109)
+++ ++ .+..+++|++|++++|++.
T Consensus 171 i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 171 VHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CcC-hH-HhccCCCCCEEEeeCcccC
Confidence 443 22 4445555555555555543
No 374
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=9.7e-18 Score=174.18 Aligned_cols=153 Identities=15% Similarity=0.205 Sum_probs=118.6
Q ss_pred cCccccceeecccCccCCCCCccccCCCCCceEEccCCcccccCCchhhccccceEEEcccccccccccccccCcCCCce
Q 001274 93 CDLPRLVEFNISMNFVTGSIPTDLANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEE 172 (1109)
Q Consensus 93 ~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 172 (1109)
+++++|+.|++++|.++ .+| .+..+++|++|+|++|.+. .+..+..+++|++|+|++|.+++..|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56788899999999888 566 6889999999999999665 3457888999999999999999888889999999999
Q ss_pred EEeecCCCCCCCCcccccccccceecccccc-ccCCCCccccccccchhhhcccccccccCchhhhccccccceeccccc
Q 001274 173 LVIYSNNLTGAIPASISKLRQLRVIRAGHNS-LSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNH 251 (1109)
Q Consensus 173 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~ 251 (1109)
|+|++|++++..|..++++++|++|++++|. ++ .+| .+..+++|++|++++|++++. + .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 9999999998888889999999999999887 55 444 466666666666666666642 2 45556666666666665
Q ss_pred cc
Q 001274 252 LS 253 (1109)
Q Consensus 252 l~ 253 (1109)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 54
No 375
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.1e-17 Score=188.85 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=51.3
Q ss_pred CcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhccccccc-EEecccCcccccCCcCCCCCCCCCee
Q 001274 479 LQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLV-TFNISSNSLSGTIPHELGNCVNLQRL 557 (1109)
Q Consensus 479 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L 557 (1109)
+++|+.|+|++|+++.+.+..|.++++|+.|+|.+| ++.+.+..|.++++|+ .+++.+ +++.+.+.+|.++++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 344555555555554444444555555555555554 4444444455555555 555554 4443444555555555555
Q ss_pred ecCCCcCccCCCcccccccccceec
Q 001274 558 DLSRNQFTGSAPEELGQLVNLELLK 582 (1109)
Q Consensus 558 ~Ls~N~l~~~~p~~l~~l~~L~~L~ 582 (1109)
++++|+++...+..|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 5555555544444555555555543
No 376
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=7.3e-18 Score=190.37 Aligned_cols=267 Identities=12% Similarity=0.028 Sum_probs=152.7
Q ss_pred cccccceeccccccc--CCCCCCccccccccceeeeeccceecCchhhhc--------cCccceEEeecccccCccCccc
Q 001274 239 LRNLTDLILWQNHLS--GEIPPTIGNIQSLELLALHENSFSGGLPKELGK--------LSRLKKLYVYTNELNGTIPHEL 308 (1109)
Q Consensus 239 l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~l~~n~l~~~~~~~l 308 (1109)
+++|++|||++|++. ...+. .++.+..+.+..|.| .+..|.+ +++|+.|++.+ .++...+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 566777777777766 21111 122233444444422 2234444 66666666666 5554555566
Q ss_pred CCCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhcccccc-
Q 001274 309 GNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLV- 387 (1109)
Q Consensus 309 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~- 387 (1109)
.+|++|++|++++|.++...+..|....++..+.+..+... ..........|.++..|+
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~--------------------~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY--------------------RFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH--------------------HTSTTTTTSCEEESCCCEE
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh--------------------hccccccccccccccccce
Confidence 66666666666666665444444444444444433331110 001111222333344443
Q ss_pred eEEccccc-ccccCCCcccccCcCcEEEeccccccCccchhh-hcccccceeecCCccccCCCCCCCccccccceeeccc
Q 001274 388 DLQLFDNH-LEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHL-CMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQ 465 (1109)
Q Consensus 388 ~L~L~~N~-l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 465 (1109)
.+.+.... +...+...-....++..+.+.++-.. .....+ ..+++|+.|+|++|+++.+.+..|.+|++|++|+|.+
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence 22222111 00000000112344555555554221 111222 2367788888888888877777788888888888888
Q ss_pred ccccccCCccccCCcccc-eeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEec
Q 001274 466 NQLTGSLPIEFYNLQNLS-ALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNI 535 (1109)
Q Consensus 466 N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 535 (1109)
| ++.+.+.+|.++++|+ .+++.+ .++.+.+..|.++++|+.|++++|+++.+.+..|.++++|+.++.
T Consensus 260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 260 N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 7 7777778888888888 888887 777677788888888888888888888777778888888888763
No 377
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.69 E-value=3.7e-17 Score=177.35 Aligned_cols=140 Identities=21% Similarity=0.225 Sum_probs=106.8
Q ss_pred CCCCceEecCCcceEEEEEe-cCCcE--EEEEEeeccCCCc----------------------chhHHHHHHHHHhccCC
Q 001274 804 FSEGAVIGRGACGTVYKATL-ANGEV--IAVKKIKLRGEGA----------------------TADNSFLAEISTLGKIR 858 (1109)
Q Consensus 804 ~~~~~~lG~G~fg~Vy~~~~-~~~~~--vavK~~~~~~~~~----------------------~~~~~~~~E~~~l~~l~ 858 (1109)
|.+.+.||+|+||.||+|++ .+|+. ||||+++...... .....+.+|+.+++++.
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999997 67888 9999975431110 01136789999999998
Q ss_pred CCce--eeEEEEEEeCCceEEEEEeccC-C----CHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecC
Q 001274 859 HRNI--VKLYGFCYHQDSNLLLYEYMEN-G----SLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRD 931 (1109)
Q Consensus 859 h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D 931 (1109)
|+++ ..++++ +..++||||+.+ | +|.++... .++..+..++.|++.|+.|||. +.+|+|||
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~------~~~~~~~~i~~qi~~~l~~lH~--~~givHrD 196 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE------LKELDVEGIFNDVVENVKRLYQ--EAELVHAD 196 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG------GGGSCHHHHHHHHHHHHHHHHH--TSCEECSS
T ss_pred hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc------cChHHHHHHHHHHHHHHHHHHH--HCCEEeCC
Confidence 7753 344432 367899999942 4 67666432 2345678899999999999993 24899999
Q ss_pred CCCCceeeCCCCceEEeecccccccc
Q 001274 932 IKSNNILLDEEFQAHVGDFGLAKLID 957 (1109)
Q Consensus 932 lkp~NIll~~~~~~kl~DFG~a~~~~ 957 (1109)
|||+|||++. .++|+|||+|....
T Consensus 197 lkp~NILl~~--~~~liDFG~a~~~~ 220 (258)
T 1zth_A 197 LSEYNIMYID--KVYFIDMGQAVTLR 220 (258)
T ss_dssp CSTTSEEESS--SEEECCCTTCEETT
T ss_pred CCHHHEEEcC--cEEEEECcccccCC
Confidence 9999999998 99999999998653
No 378
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=5e-17 Score=167.90 Aligned_cols=113 Identities=28% Similarity=0.389 Sum_probs=56.6
Q ss_pred CCCeeecCCCcCccCCCc-ccccccccceecccccccccccCcccCCCcccceeeccCccccccccccccccchhhhhhc
Q 001274 553 NLQRLDLSRNQFTGSAPE-ELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIPVALGQLTALQIALN 631 (1109)
Q Consensus 553 ~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~~~L~ 631 (1109)
+|++|+|++|+|++..+. .|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+.+++.|+ .|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK-TLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC-EEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC-EEE
Confidence 444444444444432222 244444444444444444444444444444444444444444433333333333333 244
Q ss_pred cCCccccccccccccCccccceeecCCCccccCCc
Q 001274 632 ISHNNLSGVIPYELGNLQMLEALYLDDNQLIGEIP 666 (1109)
Q Consensus 632 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip 666 (1109)
|++|+|++.+|..|+.+++|++|+|++|++++..+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 44455555556666777777777777777777665
No 379
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=7.9e-16 Score=155.25 Aligned_cols=132 Identities=24% Similarity=0.253 Sum_probs=75.6
Q ss_pred cccceeeccccccc-ccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEe
Q 001274 456 RSLMQLMLGQNQLT-GSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFN 534 (1109)
Q Consensus 456 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 534 (1109)
++|++|++++|+++ +.+|..|..+++|++|+|++|.+++. ..+..+++|++|+|++|++++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34455555555554 34455555555666666666665544 4556666666666666666655555555566666666
Q ss_pred cccCcccccC-CcCCCCCCCCCeeecCCCcCccCCC---cccccccccceecccccccc
Q 001274 535 ISSNSLSGTI-PHELGNCVNLQRLDLSRNQFTGSAP---EELGQLVNLELLKLSDNKLT 589 (1109)
Q Consensus 535 Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~ 589 (1109)
|++|++++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666665321 1455666666666666666664333 25555666666666666555
No 380
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=8e-16 Score=155.21 Aligned_cols=132 Identities=20% Similarity=0.149 Sum_probs=71.6
Q ss_pred CCCceEEccCCccc-ccCCchhhccccceEEEcccccccccccccccCcCCCceEEeecCCCCCCCCcccccccccceec
Q 001274 120 SSLEILDLCTNRLH-GVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIR 198 (1109)
Q Consensus 120 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 198 (1109)
++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. ..++.+++|++|+|++|++++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34455555555544 34444444455555555555554433 4555566666666666666555555555556666666
Q ss_pred cccccccCCC-CccccccccchhhhcccccccccCc---hhhhccccccceeccccccc
Q 001274 199 AGHNSLSGPI-PPEISECEGLEVLGLAQNSLEGFLP---SELEKLRNLTDLILWQNHLS 253 (1109)
Q Consensus 199 l~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~N~l~ 253 (1109)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666555321 1445555555555555555554433 35556666666666666655
No 381
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=6.4e-15 Score=169.79 Aligned_cols=242 Identities=14% Similarity=0.123 Sum_probs=147.7
Q ss_pred CccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecC
Q 001274 361 QLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLG 440 (1109)
Q Consensus 361 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 440 (1109)
+|+.+++..| ++......|.+. +|+.+.+.+ .++...+..|..+++|+.+++++|+++.+....|. ..+|+.+.|.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 3455554433 333333444442 355555543 34434444555555555555555555544444444 3556666665
Q ss_pred CccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccC---
Q 001274 441 SNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFV--- 517 (1109)
Q Consensus 441 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--- 517 (1109)
++ ++.+....|.++++|+.+.+..| ++.+...+|.+ .+|+.+.| .|.++.+....|.++++|+.+++.+|.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 33 55455566666666666666654 45455666666 66777777 44555566667777777777777776654
Q ss_pred --CCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcc
Q 001274 518 --GYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSS 595 (1109)
Q Consensus 518 --~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 595 (1109)
.+.+..|.++++|+.++|. |.++.+-..+|.++++|+.++|..| ++...+.+|.++ +|+.+++++|.+....+..
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence 3455677777777777777 4466566677777777887777554 555556677777 7788888777777666677
Q ss_pred cCCCc-ccceeeccCcccc
Q 001274 596 LGGLA-RLTELQMGGNIFS 613 (1109)
Q Consensus 596 ~~~l~-~L~~L~l~~N~l~ 613 (1109)
|.+++ +++.|++..|.+.
T Consensus 365 F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 365 WYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCCSCTTCCEEEECGGGHH
T ss_pred ccCCCCCccEEEeCHHHHH
Confidence 77774 6677777666543
No 382
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=154.65 Aligned_cols=128 Identities=26% Similarity=0.401 Sum_probs=89.9
Q ss_pred ceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCC
Q 001274 483 SALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRN 562 (1109)
Q Consensus 483 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 562 (1109)
+.+++++|.++. +|..+. ++|++|+|++|+|+ .+|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 345556666553 343332 46777777777776 45667777777777777777777666667777777777777777
Q ss_pred cCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCccccc
Q 001274 563 QFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSG 614 (1109)
Q Consensus 563 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 614 (1109)
+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7776666677777777777777777776666677778888888888887764
No 383
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.1e-15 Score=150.65 Aligned_cols=127 Identities=22% Similarity=0.260 Sum_probs=67.2
Q ss_pred cccceeeccccccc-ccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEe
Q 001274 456 RSLMQLMLGQNQLT-GSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFN 534 (1109)
Q Consensus 456 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 534 (1109)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444455555444 34444455555555555555555544 4455555555566655555554555555555555555
Q ss_pred cccCccccc-CCcCCCCCCCCCeeecCCCcCccCCC---cccccccccceeccc
Q 001274 535 ISSNSLSGT-IPHELGNCVNLQRLDLSRNQFTGSAP---EELGQLVNLELLKLS 584 (1109)
Q Consensus 535 Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls 584 (1109)
+++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555532 22455555555555555555554333 345555555555554
No 384
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=1.3e-14 Score=167.25 Aligned_cols=161 Identities=12% Similarity=0.159 Sum_probs=95.1
Q ss_pred ccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceecccccccc-----CCCC
Q 001274 423 SIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFS-----GLIP 497 (1109)
Q Consensus 423 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----~~~p 497 (1109)
+....|.++.+|+.+++..| ++.+....|.+ .+|+.+.+ .|.++.+...+|.++++|+.+++.+|.+. .+.+
T Consensus 217 I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~ 293 (401)
T 4fdw_A 217 IGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP 293 (401)
T ss_dssp ECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT
T ss_pred ehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH
Confidence 33344444444444444432 33333444444 45555555 33344455556666666666666665543 3445
Q ss_pred ccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCccccccc-
Q 001274 498 PEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLV- 576 (1109)
Q Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~- 576 (1109)
..|.++++|+.++|.+ .++.+....|.++++|+.++|..| ++.+-+.+|.++ +|+.+++++|.+....+..|.+++
T Consensus 294 ~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~ 370 (401)
T 4fdw_A 294 YCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPD 370 (401)
T ss_dssp TTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCT
T ss_pred HHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCC
Confidence 5667777777777763 366555666777777777777544 555566677777 777777777777655556666664
Q ss_pred ccceecccccccc
Q 001274 577 NLELLKLSDNKLT 589 (1109)
Q Consensus 577 ~L~~L~Ls~N~l~ 589 (1109)
+++.|++..|.+.
T Consensus 371 ~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 371 DITVIRVPAESVE 383 (401)
T ss_dssp TCCEEEECGGGHH
T ss_pred CccEEEeCHHHHH
Confidence 5777777766554
No 385
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=6.4e-16 Score=152.50 Aligned_cols=128 Identities=25% Similarity=0.276 Sum_probs=93.1
Q ss_pred Ccccceecccccccc-CCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCee
Q 001274 479 LQNLSALELYQNRFS-GLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRL 557 (1109)
Q Consensus 479 l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 557 (1109)
.++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..++++++|++|+|++|++++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467778888888877 56677777777888888888877765 667777777777777777776667666667777777
Q ss_pred ecCCCcCccC-CCcccccccccceecccccccccccC---cccCCCcccceeecc
Q 001274 558 DLSRNQFTGS-APEELGQLVNLELLKLSDNKLTGAIP---SSLGGLARLTELQMG 608 (1109)
Q Consensus 558 ~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~l~ 608 (1109)
++++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.||++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777752 23667777777777777777776555 467777777777765
No 386
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=4.3e-15 Score=151.25 Aligned_cols=132 Identities=19% Similarity=0.263 Sum_probs=84.8
Q ss_pred ceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCC
Q 001274 483 SALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRN 562 (1109)
Q Consensus 483 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 562 (1109)
+.+++++|+++.+ |..+. ++|++|++++|++++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 10 ~~l~~~~~~l~~~-p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSV-PTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSC-CTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccC-CCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4455555555533 32222 45666666666666655555666666677777777666555555666777777777777
Q ss_pred cCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCcccccccc
Q 001274 563 QFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFSGSIP 617 (1109)
Q Consensus 563 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 617 (1109)
+|++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7775555556677777777777777776666666777777777777777776544
No 387
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=6.9e-15 Score=151.72 Aligned_cols=109 Identities=25% Similarity=0.369 Sum_probs=68.9
Q ss_pred cccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeec
Q 001274 480 QNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDL 559 (1109)
Q Consensus 480 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 559 (1109)
++|++|+|++|+|+ .+|..|..+++|+.|+|++|+|+++.+..|.++++|++|+|++|+|++..|..|..+++|+.|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 35566666666665 33456666666666666666666655566666666666666666666655566666666666666
Q ss_pred CCCcCccCCCcccccccccceecccccccc
Q 001274 560 SRNQFTGSAPEELGQLVNLELLKLSDNKLT 589 (1109)
Q Consensus 560 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 589 (1109)
++|+|++..+..|..+++|+.|+|++|++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 666666544445666666666666666665
No 388
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.57 E-value=1.2e-15 Score=170.99 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=101.7
Q ss_pred CCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCC---c---------chhH--------HHHHHHHHhccCCCCce
Q 001274 803 NFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEG---A---------TADN--------SFLAEISTLGKIRHRNI 862 (1109)
Q Consensus 803 ~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~---~---------~~~~--------~~~~E~~~l~~l~h~ni 862 (1109)
=|++.+.||+|+||.||+|+..+|+.||||+++..... . .... ...+|...+.++.+.++
T Consensus 96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv 175 (397)
T 4gyi_A 96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF 175 (397)
T ss_dssp CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 38889999999999999999989999999997632110 0 0001 12356667777654443
Q ss_pred --eeEEEEEEeCCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeC
Q 001274 863 --VKLYGFCYHQDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLD 940 (1109)
Q Consensus 863 --v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~ 940 (1109)
...+++ ...++||||++|++|.++... .....++.|++.+|.||| +.|||||||||.|||++
T Consensus 176 ~vp~p~~~----~~~~LVME~i~G~~L~~l~~~---------~~~~~l~~qll~~l~~lH---~~gIVHrDLKp~NILl~ 239 (397)
T 4gyi_A 176 PVPEPIAQ----SRHTIVMSLVDALPMRQVSSV---------PDPASLYADLIALILRLA---KHGLIHGDFNEFNILIR 239 (397)
T ss_dssp SCCCEEEE----ETTEEEEECCSCEEGGGCCCC---------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE
T ss_pred CCCeeeec----cCceEEEEecCCccHhhhccc---------HHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEe
Confidence 222222 235899999999888654321 234568899999999999 77999999999999998
Q ss_pred CCC----------ceEEeecccccccc
Q 001274 941 EEF----------QAHVGDFGLAKLID 957 (1109)
Q Consensus 941 ~~~----------~~kl~DFG~a~~~~ 957 (1109)
+++ .+.|+||+.+....
T Consensus 240 ~dgd~~d~~~~~~~~~iID~~Q~V~~~ 266 (397)
T 4gyi_A 240 EEKDAEDPSSITLTPIIIXFPQMVSMD 266 (397)
T ss_dssp EEECSSCTTSEEEEEEECCCTTCEETT
T ss_pred CCCCcccccccccceEEEEeCCcccCC
Confidence 776 38999999887654
No 389
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=9e-15 Score=148.86 Aligned_cols=112 Identities=22% Similarity=0.269 Sum_probs=64.6
Q ss_pred cccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeec
Q 001274 480 QNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDL 559 (1109)
Q Consensus 480 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 559 (1109)
++|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+|++|+|++..+..+..+++|++|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 45555555555555554445555556666666666665554455555666666666666666555555556666666666
Q ss_pred CCCcCccCCCcccccccccceecccccccccc
Q 001274 560 SRNQFTGSAPEELGQLVNLELLKLSDNKLTGA 591 (1109)
Q Consensus 560 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 591 (1109)
++|++++..+..|..+++|+.|+|++|++.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 66666644444455566666666666666543
No 390
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=1.4e-16 Score=165.62 Aligned_cols=133 Identities=29% Similarity=0.287 Sum_probs=72.1
Q ss_pred CccccceeecccCccCCCCCc------cccCCCCCceEEccCCcccccCCchhhccccceEEEcccccccccccccccCc
Q 001274 94 DLPRLVEFNISMNFVTGSIPT------DLANCSSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENYIFGEIPEEIGNL 167 (1109)
Q Consensus 94 ~l~~L~~L~ls~n~~~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 167 (1109)
..+.++.++++.+.++|.+|. .++++++|++|+|++|.+++ +| .+..+++|++|+|++|.++ .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 344555566666666665554 56666666666666666654 44 5555666666666666655 455555555
Q ss_pred CCCceEEeecCCCCCCCCcccccccccceeccccccccCCCC-ccccccccchhhhccccccccc
Q 001274 168 TSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSGPIP-PEISECEGLEVLGLAQNSLEGF 231 (1109)
Q Consensus 168 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~ 231 (1109)
++|++|+|++|++++ +| .++++++|++|++++|.+++..+ ..+..+++|++|++++|.+++.
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 566666666666553 33 35555555555555555542111 2344444444444444444433
No 391
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=1.7e-13 Score=158.72 Aligned_cols=237 Identities=11% Similarity=0.070 Sum_probs=104.6
Q ss_pred ccccCCCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccc
Q 001274 354 RELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQK 433 (1109)
Q Consensus 354 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ 433 (1109)
.+|.++++|+.+.+..+..+ .....|.++.+|+.+.+..| ++......|..+..|+.+.+..+... +........+
T Consensus 156 ~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~ 231 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG 231 (394)
T ss_dssp TTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred hhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence 34555555555555443222 33444555555555555443 33233344444455555544443221 1111222234
Q ss_pred cceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccC
Q 001274 434 LIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSE 513 (1109)
Q Consensus 434 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 513 (1109)
|+.+.+..+ ++.+....|..+..|+.+.+..+... +....|.++..++.+....+.+. ...|..+.+|+.+.+.+
T Consensus 232 l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 232 VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECT
T ss_pred CceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccccc
Confidence 444444322 22223334444555555555444332 34444555555555544443322 22444555555555543
Q ss_pred CccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccC
Q 001274 514 NYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIP 593 (1109)
Q Consensus 514 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 593 (1109)
+ ++.+...+|.++.+|+.++|.++ ++.+-..+|.++++|+.+++..| ++..-..+|.++.+|+.+++..+ ++ .+.
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~ 381 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYR 381 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGG
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehh
Confidence 3 33333444555555555555432 44333445555555555555444 33333444555555555555433 22 123
Q ss_pred cccCCCcccce
Q 001274 594 SSLGGLARLTE 604 (1109)
Q Consensus 594 ~~~~~l~~L~~ 604 (1109)
.+|.++++|+.
T Consensus 382 ~~F~~c~~L~~ 392 (394)
T 4fs7_A 382 YDFEDTTKFKW 392 (394)
T ss_dssp GGBCTTCEEEE
T ss_pred heecCCCCCcE
Confidence 34444444443
No 392
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=3.2e-13 Score=156.27 Aligned_cols=315 Identities=10% Similarity=0.019 Sum_probs=213.8
Q ss_pred cCchhhhccCccceEEeecccccCccCcccCCCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccC
Q 001274 279 GLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQ 358 (1109)
Q Consensus 279 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 358 (1109)
....+|.++++|+.+.+..+ ++.....+|.+|++|+.++|.++ ++......|....+|+.+.+..+ +......+|..
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 33345555555555555432 44333445666666666666543 44333445555555555554433 33344455666
Q ss_pred CCCccEEEcccCcccCCCCcchhcccccceEEcccccccccCCCcccccCcCcEEEeccccccCccchhhhcccccceee
Q 001274 359 LTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDNHLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLS 438 (1109)
Q Consensus 359 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 438 (1109)
...++....... .......|.++++|+.+.+.++. .......|..+.+|+.+++..| ++.+....|.+...|+.+.
T Consensus 139 ~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 139 CDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp CCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 544433333222 22345678899999999997664 3356667888899999999876 5556677888888888888
Q ss_pred cCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCC
Q 001274 439 LGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVG 518 (1109)
Q Consensus 439 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 518 (1109)
+..+... +...+....+|+.+.+..+ ++.+....|.++.+|+.+.+..+... +....|..+..++.+....+.+.
T Consensus 215 ~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~- 289 (394)
T 4fs7_A 215 FPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP- 289 (394)
T ss_dssp CCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-
T ss_pred cCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-
Confidence 8776543 3344455677888887654 34466678888999999988877554 66678888888998888777543
Q ss_pred CCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCC
Q 001274 519 YIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGG 598 (1109)
Q Consensus 519 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 598 (1109)
...|..+.+|+.+.+..+ ++.+-..+|.++++|+.++|..+ ++.+-..+|.++.+|+.+++..| ++.+-..+|.+
T Consensus 290 --~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 290 --EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp --TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred --cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 356788889999988765 66566778889999999999755 66556678889999999999877 77677788999
Q ss_pred CcccceeeccCc
Q 001274 599 LARLTELQMGGN 610 (1109)
Q Consensus 599 l~~L~~L~l~~N 610 (1109)
+++|+.+++..+
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 999998887644
No 393
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=2.4e-16 Score=163.77 Aligned_cols=161 Identities=24% Similarity=0.304 Sum_probs=91.8
Q ss_pred hhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCcccccccccc
Q 001274 428 LCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLE 507 (1109)
Q Consensus 428 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 507 (1109)
+.....++.++++.|.+.+..|. ++ .+|..|..+++|++|+|++|.+++ +| .+..+++|+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~-----------------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~ 73 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP-----------------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLR 73 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT-----------------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCC
T ss_pred HHhcccccCcchheeEeccccCc-----------------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCC
Confidence 44455666666666666654443 01 122255556666666666666665 33 566666666
Q ss_pred EEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCC-cccccccccceeccccc
Q 001274 508 RLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAP-EELGQLVNLELLKLSDN 586 (1109)
Q Consensus 508 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N 586 (1109)
+|++++|+++ .+|..+..+++|++|+|++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|
T Consensus 74 ~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 74 ILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred EEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 6666666666 345555555666666666666663 33 45566666666666666653221 35566666666666666
Q ss_pred ccccccCcc----------cCCCcccceeeccCcccc
Q 001274 587 KLTGAIPSS----------LGGLARLTELQMGGNIFS 613 (1109)
Q Consensus 587 ~l~~~~p~~----------~~~l~~L~~L~l~~N~l~ 613 (1109)
++++..|.. +..+++|+.|| +|+++
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 666554432 55666666665 55554
No 394
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.2e-14 Score=147.85 Aligned_cols=104 Identities=21% Similarity=0.258 Sum_probs=48.1
Q ss_pred ccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCc--CCCCCCCCCeee
Q 001274 481 NLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPH--ELGNCVNLQRLD 558 (1109)
Q Consensus 481 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~ 558 (1109)
+|++|+|++|.|++. +.|..+++|++|+|++|+|++..+..+..+++|++|+|++|+|+ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 444444444444433 34444455555555555554433333344555555555555553 2333 444445555555
Q ss_pred cCCCcCccCCCcc----cccccccceeccccccc
Q 001274 559 LSRNQFTGSAPEE----LGQLVNLELLKLSDNKL 588 (1109)
Q Consensus 559 Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l 588 (1109)
+++|.++ .+|.. +..+++|+.|++++|.+
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5555554 23332 44444444444444443
No 395
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=8e-15 Score=149.03 Aligned_cols=133 Identities=16% Similarity=0.165 Sum_probs=100.4
Q ss_pred cccCCcccceeccccccccCCCCccccccc-cccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCC
Q 001274 475 EFYNLQNLSALELYQNRFSGLIPPEIGKLR-NLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVN 553 (1109)
Q Consensus 475 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 553 (1109)
.|.++.+|++|+|++|.++.+ |. +..+. +|++|++++|+|++. ..+..+++|++|+|++|+|++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 466677888888888888754 43 44444 888888888888865 56788888888888888888554455578888
Q ss_pred CCeeecCCCcCccCCCc--ccccccccceecccccccccccCc----ccCCCcccceeeccCcccc
Q 001274 554 LQRLDLSRNQFTGSAPE--ELGQLVNLELLKLSDNKLTGAIPS----SLGGLARLTELQMGGNIFS 613 (1109)
Q Consensus 554 L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~l~~N~l~ 613 (1109)
|++|+|++|+|+ .+|. .+..+++|+.|++++|+++. +|. .+..+++|+.||+++|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888888886 4565 77888888888888888874 454 3777888888888887665
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=4.3e-13 Score=135.15 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=70.9
Q ss_pred ccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccc
Q 001274 506 LERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSD 585 (1109)
Q Consensus 506 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 585 (1109)
.+.+++++|+++. +|..+ .++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3556666666663 44433 25666666666666666666666777777777777777655555566777777777777
Q ss_pred cccccccCcccCCCcccceeeccCcccccc
Q 001274 586 NKLTGAIPSSLGGLARLTELQMGGNIFSGS 615 (1109)
Q Consensus 586 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 615 (1109)
|+|++..+..|..+++|+.|+|++|++.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 777766666677777777777777777644
No 397
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=8e-13 Score=133.16 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=44.4
Q ss_pred ccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecc
Q 001274 504 RNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKL 583 (1109)
Q Consensus 504 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 583 (1109)
++|++|+|++|+|+++.|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44455555555555444555555555555555555555444444455555555555555555444444555555555555
Q ss_pred cccccc
Q 001274 584 SDNKLT 589 (1109)
Q Consensus 584 s~N~l~ 589 (1109)
++|+++
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 555554
No 398
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=8e-13 Score=133.64 Aligned_cols=105 Identities=20% Similarity=0.287 Sum_probs=62.4
Q ss_pred cEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceeccccc
Q 001274 507 ERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDN 586 (1109)
Q Consensus 507 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 586 (1109)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 44555555554 2343332 45566666666666555556666666666666666666544444566666666666666
Q ss_pred ccccccCcccCCCcccceeeccCccccc
Q 001274 587 KLTGAIPSSLGGLARLTELQMGGNIFSG 614 (1109)
Q Consensus 587 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 614 (1109)
+|++..+..|..+++|+.|+|++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 6665555556667777777777776663
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=1.2e-12 Score=132.24 Aligned_cols=104 Identities=20% Similarity=0.257 Sum_probs=54.9
Q ss_pred ceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccC
Q 001274 459 MQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSN 538 (1109)
Q Consensus 459 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 538 (1109)
+.+++++|+++ .+|..+. ++|++|+|++|+|+++.|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34445555444 2333322 45555555555555555555555555555555555555544444555555555555555
Q ss_pred cccccCCcCCCCCCCCCeeecCCCcCc
Q 001274 539 SLSGTIPHELGNCVNLQRLDLSRNQFT 565 (1109)
Q Consensus 539 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 565 (1109)
+|++..+..|..+++|+.|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555444444555555555555555555
No 400
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.30 E-value=6.6e-11 Score=136.76 Aligned_cols=133 Identities=12% Similarity=0.173 Sum_probs=61.9
Q ss_pred cCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCC
Q 001274 471 SLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGN 550 (1109)
Q Consensus 471 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 550 (1109)
+...+|.++.+|+.+.+..+..+ +....|.++++|+.+.+. +.++.+....|.++.+|+.++|..+ ++.+-..+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 33445555555555555443322 334455555555555554 2344344445555555555555433 44344455555
Q ss_pred CCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCCCcccceeeccCc
Q 001274 551 CVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGGLARLTELQMGGN 610 (1109)
Q Consensus 551 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 610 (1109)
+.+|+.+.|..+ ++.+-..+|.++.+|+.+++.+|.... ..|....+|+.+.+..|
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 555555555433 343334455555555555555554321 23444445555544444
No 401
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.27 E-value=7.4e-11 Score=136.38 Aligned_cols=333 Identities=12% Similarity=0.123 Sum_probs=194.2
Q ss_pred cCchhhhccc-cccceecccccccCCCCCCccccccccceeeeecc---ceecCchhhhccCccceEEeecccccCccCc
Q 001274 231 FLPSELEKLR-NLTDLILWQNHLSGEIPPTIGNIQSLELLALHENS---FSGGLPKELGKLSRLKKLYVYTNELNGTIPH 306 (1109)
Q Consensus 231 ~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~---l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~ 306 (1109)
+-..+|.+.+ .|+.+.+..+ ++..-..+|.++++|+.+.+..|. ++.....+|.++.+|+.+.+..+ ++.....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3445566653 4777777654 554455677777778877777653 55444566777777776666543 3334445
Q ss_pred ccCCCCcCcEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhccccc
Q 001274 307 ELGNCTSAVEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYL 386 (1109)
Q Consensus 307 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 386 (1109)
.|..+.+|+.+.+..+ ++......|....+|+.+.+.++ +..+...+|.. .+|+.+.+..+-.. .....|.++..+
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l 207 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFAL 207 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhcccc
Confidence 6677777777777543 33344445556666666666543 33233334433 45666665543322 334455555555
Q ss_pred ceEEcccccccccCCCcc-cccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeeccc
Q 001274 387 VDLQLFDNHLEGTIPPHI-GVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQ 465 (1109)
Q Consensus 387 ~~L~L~~N~l~~~~p~~~-~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 465 (1109)
.......+.... +...+ .......... ..+.....+..+.+. +.++.+....|.++..|+.+.+..
T Consensus 208 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 208 STITSDSESYPA-IDNVLYEKSANGDYAL-----------IRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPD 274 (394)
T ss_dssp CEEEECCSSSCB-SSSCEEEECTTSCEEE-----------EECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCT
T ss_pred ceeccccccccc-ccceeecccccccccc-----------cccccccccceEEcC-CcceEcccceeeecccccEEeccc
Confidence 555544433321 11111 0000000000 001111223333332 234445566788888888888876
Q ss_pred ccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCC
Q 001274 466 NQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIP 545 (1109)
Q Consensus 466 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 545 (1109)
+... +...+|.++++|+.+.+. +.++.+....|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.|..+ ++.+-.
T Consensus 275 ~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 275 SVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp TCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred ccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence 6544 667788888999998885 5566666778888899999999765 66566678899999999999654 665666
Q ss_pred cCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccc
Q 001274 546 HELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLT 589 (1109)
Q Consensus 546 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 589 (1109)
.+|.++++|+.+++.+|.... ..+....+|+.+.+..|.+.
T Consensus 351 ~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp GGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred hHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 789999999999998886542 46777788888888776553
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=4.9e-14 Score=160.80 Aligned_cols=172 Identities=22% Similarity=0.186 Sum_probs=78.6
Q ss_pred cccceeecccCccCCCCCccccCC-----CCCceEEccCCcccccCCchhh-ccccceEEEcccccccccccccc-----
Q 001274 96 PRLVEFNISMNFVTGSIPTDLANC-----SSLEILDLCTNRLHGVIPFQLF-FINTLRKLYLCENYIFGEIPEEI----- 164 (1109)
Q Consensus 96 ~~L~~L~ls~n~~~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l----- 164 (1109)
++|+.|+|++|.++......+... ++|++|+|++|.+++.....+. .+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345555555555553322222221 4555555555555443333332 24455555555555544333332
Q ss_pred cCcCCCceEEeecCCCCCC----CCcccccccccceeccccccccCCCCccccccccchhhhcccccccccCchhhhccc
Q 001274 165 GNLTSLEELVIYSNNLTGA----IPASISKLRQLRVIRAGHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLR 240 (1109)
Q Consensus 165 ~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 240 (1109)
...++|++|+|++|.|+.. ++..+..+++|++|+|++|.|++.... .++..+...+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~--------------------~L~~~L~~~~ 211 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE--------------------LLAAQLDRNR 211 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH--------------------HHHHHGGGCS
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH--------------------HHHHHHhcCC
Confidence 1234555555555555421 222223344444444444444321100 1233344455
Q ss_pred cccceecccccccCC----CCCCccccccccceeeeeccceecCchhhhcc
Q 001274 241 NLTDLILWQNHLSGE----IPPTIGNIQSLELLALHENSFSGGLPKELGKL 287 (1109)
Q Consensus 241 ~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 287 (1109)
+|++|+|++|.|++. ++..+...++|++|+|++|.|+......+..+
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 566666666655532 22223334566666666666655544444433
No 403
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=8.8e-14 Score=158.69 Aligned_cols=186 Identities=18% Similarity=0.159 Sum_probs=114.2
Q ss_pred CCCceEEccCCcccccCCchhhcc-----ccceEEEcccccccccccccc-cCcCCCceEEeecCCCCCCCCcccccccc
Q 001274 120 SSLEILDLCTNRLHGVIPFQLFFI-----NTLRKLYLCENYIFGEIPEEI-GNLTSLEELVIYSNNLTGAIPASISKLRQ 193 (1109)
Q Consensus 120 ~~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 193 (1109)
+.|++|+|++|.++......+... ++|++|+|++|.++......+ ..+++|++|+|++|++++.....++.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~--- 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD--- 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH---
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH---
Confidence 567777777777765544444433 566677777666654433332 23455666666666665333322211
Q ss_pred cceeccccccccCCCCccc-cccccchhhhcccccccc----cCchhhhccccccceecccccccCC----CCCCccccc
Q 001274 194 LRVIRAGHNSLSGPIPPEI-SECEGLEVLGLAQNSLEG----FLPSELEKLRNLTDLILWQNHLSGE----IPPTIGNIQ 264 (1109)
Q Consensus 194 L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~ 264 (1109)
.+ ...++|++|+|++|.|+. .++..+...++|++|+|++|+|++. ++..+...+
T Consensus 149 -----------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 149 -----------------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp -----------------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred -----------------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 11 123456666666666653 2344556778899999999988753 245667778
Q ss_pred cccceeeeeccceecC----chhhhccCccceEEeecccccCccCcccCCCC-----cCcEEE--ccCCccc
Q 001274 265 SLELLALHENSFSGGL----PKELGKLSRLKKLYVYTNELNGTIPHELGNCT-----SAVEID--LSENQLT 325 (1109)
Q Consensus 265 ~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-----~L~~L~--Ls~n~l~ 325 (1109)
+|++|+|++|.|+... +..+...++|++|+|++|.|++.....+..+. .|+.+. +..|.+.
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 9999999999998643 34556679999999999999865444443332 166666 6666654
No 404
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=3.5e-11 Score=136.67 Aligned_cols=103 Identities=22% Similarity=0.262 Sum_probs=60.5
Q ss_pred EEccCC-ccCCCCChhhcccccccEEeccc-CcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceeccccc
Q 001274 509 LHLSEN-YFVGYIPSEVGNLEHLVTFNISS-NSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDN 586 (1109)
Q Consensus 509 L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 586 (1109)
++++++ +|++ +|. +..+++|+.|+|++ |+|++..|..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455554 5553 444 55555566666654 5665555555666666666666666666555555666666666666666
Q ss_pred ccccccCcccCCCcccceeeccCccccc
Q 001274 587 KLTGAIPSSLGGLARLTELQMGGNIFSG 614 (1109)
Q Consensus 587 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 614 (1109)
+|++..+..|..++ |+.|+|++|++..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 66655555555554 6667777776654
No 405
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=3.8e-11 Score=136.31 Aligned_cols=102 Identities=22% Similarity=0.201 Sum_probs=65.0
Q ss_pred eecccc-cccccCCccccCCcccceecccc-ccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccC
Q 001274 461 LMLGQN-QLTGSLPIEFYNLQNLSALELYQ-NRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSN 538 (1109)
Q Consensus 461 L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 538 (1109)
++++++ ++++ +|. +..+++|++|+|++ |+|+++.+..|.+|++|+.|+|++|+|+++.|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 5553 444 66666666666664 6666666666666666777777777666666666666777777777777
Q ss_pred cccccCCcCCCCCCCCCeeecCCCcCc
Q 001274 539 SLSGTIPHELGNCVNLQRLDLSRNQFT 565 (1109)
Q Consensus 539 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 565 (1109)
+|++..+..|..++ |+.|+|++|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 77655444454444 777777777765
No 406
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.10 E-value=1.6e-10 Score=125.44 Aligned_cols=147 Identities=16% Similarity=0.074 Sum_probs=114.4
Q ss_pred HHHhcCCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC-CCceeeEEEEEEeCCceE
Q 001274 798 LEATGNFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR-HRNIVKLYGFCYHQDSNL 876 (1109)
Q Consensus 798 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~ 876 (1109)
......|+.....+.|+++.||++... ++.+++|+....... ....+.+|+++++.+. +..+.++++++...+..+
T Consensus 10 ~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~--~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~ 86 (263)
T 3tm0_A 10 KKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKG--TTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSN 86 (263)
T ss_dssp HHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTT--STTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEE
T ss_pred HHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCC--CHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceE
Confidence 344567888888888999999999865 688999998643211 2345889999998884 667889999999888999
Q ss_pred EEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhc----------------------------------
Q 001274 877 LLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYD---------------------------------- 922 (1109)
Q Consensus 877 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---------------------------------- 922 (1109)
+||||++|.++.+.+.. ......++.++++++..||..
T Consensus 87 lv~e~i~G~~l~~~~~~--------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (263)
T 3tm0_A 87 LLMSEADGVLCSEEYED--------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENW 158 (263)
T ss_dssp EEEECCSSEEHHHHCCT--------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGG
T ss_pred EEEEecCCeehhhccCC--------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccc
Confidence 99999999999876421 123447888999999999961
Q ss_pred ----------------------CCCCeEecCCCCCceeeCCCCceEEeecccccc
Q 001274 923 ----------------------CRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 923 ----------------------~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~ 955 (1109)
....++|+|++|.||+++++..+.|+||+.+..
T Consensus 159 ~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~ 213 (263)
T 3tm0_A 159 EEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR 213 (263)
T ss_dssp STTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred cccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence 014599999999999998766667999998763
No 407
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.03 E-value=1.1e-08 Score=117.39 Aligned_cols=144 Identities=13% Similarity=0.174 Sum_probs=69.3
Q ss_pred CCCccccccceeecccccccccCCccccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhccccc
Q 001274 450 PGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEH 529 (1109)
Q Consensus 450 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 529 (1109)
..+..+.+|+.+.+..+ +..+...+|.++.+|+.+.+..+ ++.+....|.++.+|+.+.+..+ ++.+....|.++++
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 34444455555555433 23244445555555555555443 33344445555555555555433 33333344555555
Q ss_pred ccEEecccCcccccCCcCCCCCCCCCeeecCCCcCccCCCcccccccccceecccccccccccCcccCC
Q 001274 530 LVTFNISSNSLSGTIPHELGNCVNLQRLDLSRNQFTGSAPEELGQLVNLELLKLSDNKLTGAIPSSLGG 598 (1109)
Q Consensus 530 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 598 (1109)
|+.+++.++.++.+-..+|.++.+|+.++|..+ ++.+-..+|.++.+|+.+.+..+ ++.+-..+|.+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 555555555555444455555555555555433 33333344555555555555433 33333344443
No 408
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=1.5e-08 Score=116.41 Aligned_cols=318 Identities=9% Similarity=0.024 Sum_probs=190.3
Q ss_pred hhhccccccceecccccccCCCCCCccccccccceeeeeccceecCchhhhccCccceEEeecccccCccCcccCCCCcC
Q 001274 235 ELEKLRNLTDLILWQNHLSGEIPPTIGNIQSLELLALHENSFSGGLPKELGKLSRLKKLYVYTNELNGTIPHELGNCTSA 314 (1109)
Q Consensus 235 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 314 (1109)
++....+|+.+.+.. .++.....+|.++.+|+.+.|..+ ++.....+|.+. +|+.+.+..+ ++.....+|.. .+|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 455566777777754 355344567778888888888643 554555666665 5666666543 33233334444 367
Q ss_pred cEEEccCCcccCCCcccccCCCCcceEecccccccCcccccccCCCCccEEEcccCcccCCCCcchhcccccceEEcccc
Q 001274 315 VEIDLSENQLTGFIPRELGLIPNLCLLQLFENMLQGSIPRELGQLTQLHKLDLSINNLTGTIPLEFQNLTYLVDLQLFDN 394 (1109)
Q Consensus 315 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 394 (1109)
+.+++..+- +......|.. .+|+.+.+..+ +.......|.....++.+.+..++..... .........
T Consensus 116 ~~i~lp~~~-~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~-------- 183 (379)
T 4h09_A 116 DDFEFPGAT-TEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVA-ENYVLYNKN-------- 183 (379)
T ss_dssp SEEECCTTC-CEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEE-ETTEEEETT--------
T ss_pred ccccCCCcc-cccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeec-ccceecccc--------
Confidence 777776542 2122223322 23444443332 22233445555566666655544332110 000000000
Q ss_pred cccccCCCcccccCcCcEEEeccccccCccchhhhcccccceeecCCccccCCCCCCCccccccceeecccccccccCCc
Q 001274 395 HLEGTIPPHIGVNSHLSVLDVSMNNLDGSIPPHLCMYQKLIFLSLGSNRLSGNIPPGLKTCRSLMQLMLGQNQLTGSLPI 474 (1109)
Q Consensus 395 ~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 474 (1109)
......+.....+..+.+..+. .......+....+|+.+.+..+ ++.+....|.++..|+.+.+..+ ++.+...
T Consensus 184 ---~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~ 257 (379)
T 4h09_A 184 ---KTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSF 257 (379)
T ss_dssp ---SSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTT
T ss_pred ---cceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcc
Confidence 0111122233344444443322 2233455666677777777554 44455667788888888888776 6656677
Q ss_pred cccCCcccceeccccccccCCCCccccccccccEEEccCCccCCCCChhhcccccccEEecccCcccccCCcCCCCCCCC
Q 001274 475 EFYNLQNLSALELYQNRFSGLIPPEIGKLRNLERLHLSENYFVGYIPSEVGNLEHLVTFNISSNSLSGTIPHELGNCVNL 554 (1109)
Q Consensus 475 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 554 (1109)
+|.++.+|+.+.+..+ +..+....|.++++|+.+.+.++.++.+....|.++.+|+.++|..+ ++.+-..+|.++++|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 8888888998888654 55566678888899999999888888777788999999999999755 665667789999999
Q ss_pred CeeecCCCcCccCCCccccccccc
Q 001274 555 QRLDLSRNQFTGSAPEELGQLVNL 578 (1109)
Q Consensus 555 ~~L~Ls~N~l~~~~p~~l~~l~~L 578 (1109)
+.+.+..+ ++.+-..+|.++..+
T Consensus 336 ~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 336 STISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCCCCCTT-CCEECTTTTTTSSCC
T ss_pred CEEEECCc-cCEEchhHhhCCCCC
Confidence 99998765 554556677776443
No 409
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=98.95 E-value=7.5e-10 Score=120.01 Aligned_cols=129 Identities=16% Similarity=0.063 Sum_probs=96.8
Q ss_pred ecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCc--eeeEEEEEEeCCceEEEEEeccCCCHH
Q 001274 811 GRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRN--IVKLYGFCYHQDSNLLLYEYMENGSLG 888 (1109)
Q Consensus 811 G~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~~~~gsL~ 888 (1109)
+.|..+.||++...+|+.+++|..... ....+.+|+++++.+.+.+ +.+++++...++..++||||++|.++.
T Consensus 29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~-----~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~ 103 (264)
T 1nd4_A 29 IGCSDAAVFRLSAQGRPVLFVKTDLSG-----ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL 103 (264)
T ss_dssp CTTSSCEEEEEECTTSCCEEEEEECSC-----TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT
T ss_pred cCCCCceEEEEecCCCCeEEEEeCCcc-----cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC
Confidence 455669999998777888999987532 2345788999998885444 556888888877889999999998884
Q ss_pred HHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcC---------------------------------------------
Q 001274 889 EQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDC--------------------------------------------- 923 (1109)
Q Consensus 889 ~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~--------------------------------------------- 923 (1109)
... .+ ...++.++++.+..||...
T Consensus 104 --~~~------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (264)
T 1nd4_A 104 --SSH------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFA 172 (264)
T ss_dssp --TSC------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHH
T ss_pred --cCc------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHH
Confidence 211 11 2356778888888888421
Q ss_pred ----------CCCeEecCCCCCceeeCCCCceEEeecccccc
Q 001274 924 ----------RPHIIHRDIKSNNILLDEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 924 ----------~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~ 955 (1109)
...++|+|++|.||++++++.+.|+|||.+..
T Consensus 173 ~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 173 RLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp HHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred HHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 11399999999999998876677999998863
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=2.8e-10 Score=128.43 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=42.0
Q ss_pred cccccceecccccccCCCCCCc---cccccccceeeeeccceecC----chhhhccCccceEEeecccccCccCcccCC-
Q 001274 239 LRNLTDLILWQNHLSGEIPPTI---GNIQSLELLALHENSFSGGL----PKELGKLSRLKKLYVYTNELNGTIPHELGN- 310 (1109)
Q Consensus 239 l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~- 310 (1109)
+++|++|+|++|.+++..+..+ ..+++|++|+|+.|.+++.. +..+..+++|+.|++++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 3445555555544443222111 13456666666666665432 233345666777777777665433333322
Q ss_pred CCcCcEEEccCCc
Q 001274 311 CTSAVEIDLSENQ 323 (1109)
Q Consensus 311 l~~L~~L~Ls~n~ 323 (1109)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 1 3557777766
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=1.2e-10 Score=131.63 Aligned_cols=204 Identities=17% Similarity=0.164 Sum_probs=114.4
Q ss_pred CeEEEEeccCccccc-c-------ccccccCccccceeecccCccC---------CCCCccccCCCCCceEEccCCcccc
Q 001274 72 FKVTSVDLHGLNLSG-I-------LSPRICDLPRLVEFNISMNFVT---------GSIPTDLANCSSLEILDLCTNRLHG 134 (1109)
Q Consensus 72 ~~v~~l~l~~~~l~g-~-------~~~~~~~l~~L~~L~ls~n~~~---------~~~p~~l~~l~~L~~L~Ls~n~l~~ 134 (1109)
.+|+++.+...+..| . +..++..+++|+.|.+..+... +.++..+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 367777776555443 2 2344556778888877654321 224444556667777777666211
Q ss_pred cCCchhhccccceEEEccccccccccccccc--CcCCCceEEeec--CCCCCCCCcccccccccceeccccccccCCCCc
Q 001274 135 VIPFQLFFINTLRKLYLCENYIFGEIPEEIG--NLTSLEELVIYS--NNLTGAIPASISKLRQLRVIRAGHNSLSGPIPP 210 (1109)
Q Consensus 135 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~--n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 210 (1109)
.++. + .+++|++|+|..+.+.......++ .+++|++|+|+. |...+.. . +. .+..
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~----------------~~-~l~~ 244 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--D----------------MN-VFRP 244 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--C----------------GG-GTGG
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--h----------------HH-HHHH
Confidence 1222 2 256666666666665544333343 566666666642 1111110 0 00 0001
Q ss_pred cc--cccccchhhhcccccccccCchhhh---ccccccceecccccccCC----CCCCccccccccceeeeeccceecCc
Q 001274 211 EI--SECEGLEVLGLAQNSLEGFLPSELE---KLRNLTDLILWQNHLSGE----IPPTIGNIQSLELLALHENSFSGGLP 281 (1109)
Q Consensus 211 ~l--~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p 281 (1109)
.+ ..+++|++|+|.+|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 11 2356677777777766544333343 467888888888888753 44555677888888888888876555
Q ss_pred hhhhc-cCccceEEeeccc
Q 001274 282 KELGK-LSRLKKLYVYTNE 299 (1109)
Q Consensus 282 ~~l~~-l~~L~~L~l~~n~ 299 (1109)
..+.. + ...++++.++
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 55544 3 3567887776
No 412
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.81 E-value=9.1e-09 Score=117.16 Aligned_cols=143 Identities=14% Similarity=0.181 Sum_probs=105.6
Q ss_pred CCceEecCCcceEEEEEecCCcEEEEEEee--ccCCCcchhHHHHHHHHHhccCC--CCceeeEEEEEEeC---CceEEE
Q 001274 806 EGAVIGRGACGTVYKATLANGEVIAVKKIK--LRGEGATADNSFLAEISTLGKIR--HRNIVKLYGFCYHQ---DSNLLL 878 (1109)
Q Consensus 806 ~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~--~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~---~~~~lv 878 (1109)
..+.++.|.++.||+++..+ ..+++|+.. ... .......+.+|+.+++.+. +..+.+++.++.+. +..++|
T Consensus 42 ~~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~-~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~v 119 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSK-LLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYI 119 (359)
T ss_dssp EEEECCC-CCSCEEEEECSS-CEEEEECCCC-----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEE
T ss_pred eEEEcCCcccceEEEEEECC-ceEEEEeCCCCCCC-CCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEE
Confidence 34678999999999998764 678888764 221 1122456888999999886 45578888888776 447999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcC-----------------------------------
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDC----------------------------------- 923 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~----------------------------------- 923 (1109)
|||++|..+.+... ..++..++..++.++++.|..||...
T Consensus 120 me~v~G~~l~~~~~-----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (359)
T 3dxp_A 120 MEFVSGRVLWDQSL-----PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESI 194 (359)
T ss_dssp EECCCCBCCCCTTC-----TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCC
T ss_pred EEecCCeecCCCcc-----ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCC
Confidence 99999987744211 12678888899999999999999620
Q ss_pred --------------------CCCeEecCCCCCceeeCCCCc--eEEeecccccc
Q 001274 924 --------------------RPHIIHRDIKSNNILLDEEFQ--AHVGDFGLAKL 955 (1109)
Q Consensus 924 --------------------~~~ivH~Dlkp~NIll~~~~~--~kl~DFG~a~~ 955 (1109)
...++|+|+++.||+++.++. +.|+||+.+..
T Consensus 195 ~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 195 PAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred hHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 257999999999999997753 68999998874
No 413
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.80 E-value=8.3e-11 Score=125.72 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=77.2
Q ss_pred CCccceeeecCC--eEEEEeccC---ccccccccc-cccCccccceeecccCccCCCCCc-cccCCCCCce--EEccCCc
Q 001274 61 PCNWIGVECTDF--KVTSVDLHG---LNLSGILSP-RICDLPRLVEFNISMNFVTGSIPT-DLANCSSLEI--LDLCTNR 131 (1109)
Q Consensus 61 ~c~w~gv~C~~~--~v~~l~l~~---~~l~g~~~~-~~~~l~~L~~L~ls~n~~~~~~p~-~l~~l~~L~~--L~Ls~n~ 131 (1109)
.|+|.|+.|+.. +|+.+-..+ ..+.|.+.+ .+..+.. .|...+|.-++.+.- .+...+.|+. ++++.|+
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~ 154 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNR 154 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTS
T ss_pred HHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCCH
Confidence 489999999753 666555544 344555543 2222222 223334433333321 1444444444 5555553
Q ss_pred cc---ccCCchhhccccceEEEcccccccc--cccccccCcCCCceEEeecCCCCCCCCcccccccccceeccccccccC
Q 001274 132 LH---GVIPFQLFFINTLRKLYLCENYIFG--EIPEEIGNLTSLEELVIYSNNLTGAIPASISKLRQLRVIRAGHNSLSG 206 (1109)
Q Consensus 132 l~---~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 206 (1109)
.. +.++.....+++|+.|+|++|.|++ .+|..++.+++|++|+|++|+|++. ..+..++
T Consensus 155 ~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~-------------- 218 (267)
T 3rw6_A 155 RSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK-------------- 218 (267)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT--------------
T ss_pred HHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc--------------
Confidence 22 1111111234555555555555554 3344445555555555555555532 2222222
Q ss_pred CCCccccccccchhhhcccccccccCc-------hhhhcccccccee
Q 001274 207 PIPPEISECEGLEVLGLAQNSLEGFLP-------SELEKLRNLTDLI 246 (1109)
Q Consensus 207 ~~p~~l~~l~~L~~L~L~~n~l~~~~p-------~~l~~l~~L~~L~ 246 (1109)
.+ +|++|+|++|.+.+.+| ..+..+++|+.||
T Consensus 219 -------~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 219 -------GL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp -------TS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred -------cC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 11 55555555555554443 2366777887776
No 414
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.70 E-value=5.5e-09 Score=115.92 Aligned_cols=187 Identities=20% Similarity=0.169 Sum_probs=121.7
Q ss_pred CceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC-CCc--eeeEEEEEEeCC---ceEEEEE
Q 001274 807 GAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR-HRN--IVKLYGFCYHQD---SNLLLYE 880 (1109)
Q Consensus 807 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~e 880 (1109)
.+.++.|....||++. +.+++|+... ......+.+|+++++.+. +.. +.+++......+ ..|+|||
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~----~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~ 96 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKH----SRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFT 96 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESS----HHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEE
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCC----cchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEc
Confidence 4568999999999874 4588887642 134567889999998873 322 344554443333 3489999
Q ss_pred eccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhc--------------------------------------
Q 001274 881 YMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYD-------------------------------------- 922 (1109)
Q Consensus 881 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-------------------------------------- 922 (1109)
+++|.++.+.... .++..++..++.++++.+..||..
T Consensus 97 ~i~G~~l~~~~~~-----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (304)
T 3sg8_A 97 KIKGVPLTPLLLN-----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMK 171 (304)
T ss_dssp CCCCEECCHHHHH-----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred ccCCeECCccccc-----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHH
Confidence 9999888653321 267777888888888888888851
Q ss_pred -----------------CCCCeEecCCCCCceeeCC--CCceEEeeccccccccCCCCCCc--cc-----------cccc
Q 001274 923 -----------------CRPHIIHRDIKSNNILLDE--EFQAHVGDFGLAKLIDLPYSKSM--SA-----------IAGS 970 (1109)
Q Consensus 923 -----------------~~~~ivH~Dlkp~NIll~~--~~~~kl~DFG~a~~~~~~~~~~~--~~-----------~~gt 970 (1109)
....++|+|++|.||++++ +..+.|+||+.+.......+-.. .. ....
T Consensus 172 ~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~ 251 (304)
T 3sg8_A 172 KVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNH 251 (304)
T ss_dssp HHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHH
Confidence 0245899999999999998 55688999999875431100000 00 0000
Q ss_pred cceec-cccccCCCCCccchhHHHHHHHHHHHhCCCCCC
Q 001274 971 YGYIA-PEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQ 1008 (1109)
Q Consensus 971 ~~y~a-PE~~~~~~~~~~~DvwSlGvll~elltg~~pf~ 1008 (1109)
.++.. |+.... .....+.|++|.++|++.+|+.+|.
T Consensus 252 Y~~~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~~ 288 (304)
T 3sg8_A 252 YKHKDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDWY 288 (304)
T ss_dssp HTCSCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 01111 221111 1223689999999999999988753
No 415
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=9.4e-09 Score=104.66 Aligned_cols=120 Identities=23% Similarity=0.216 Sum_probs=77.4
Q ss_pred ccccccccCccccceeecccC-ccCCC----CCccccCCCCCceEEccCCcccccCCc----hhhccccceEEEcccccc
Q 001274 86 GILSPRICDLPRLVEFNISMN-FVTGS----IPTDLANCSSLEILDLCTNRLHGVIPF----QLFFINTLRKLYLCENYI 156 (1109)
Q Consensus 86 g~~~~~~~~l~~L~~L~ls~n-~~~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~L~~n~l 156 (1109)
..+...+...+.|++|+|++| .++.. +...+...+.|++|+|++|.+.+.... .+...++|++|+|++|.|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 344556667788888888888 77642 445566678888888888888764333 333446788888888877
Q ss_pred ccc----ccccccCcCCCceEEe--ecCCCCCCCC----cccccccccceecccccccc
Q 001274 157 FGE----IPEEIGNLTSLEELVI--YSNNLTGAIP----ASISKLRQLRVIRAGHNSLS 205 (1109)
Q Consensus 157 ~~~----~p~~l~~l~~L~~L~L--~~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~ 205 (1109)
... +...+...++|++|+| ++|.|+.... ..+...+.|+.|+|++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 654 4556666777777777 6677764422 22333355555555555553
No 416
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.40 E-value=8.4e-07 Score=98.94 Aligned_cols=137 Identities=18% Similarity=0.156 Sum_probs=101.3
Q ss_pred CCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCC----CceeeEEEEEEeCCceEEE
Q 001274 803 NFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRH----RNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 803 ~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~l~~~~~~~~~~~lv 878 (1109)
.+...+.++.|....||++ ++.+++|+... ......+.+|+++++.+.+ ..+.+++++ +..++|
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~----~~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lv 105 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKR----DSVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNI 105 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESS----HHHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCc----HHHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEE
Confidence 6677789999999999998 56788887641 2224568899988888865 224455554 567999
Q ss_pred EEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcC-----------------------------------
Q 001274 879 YEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDC----------------------------------- 923 (1109)
Q Consensus 879 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~----------------------------------- 923 (1109)
|||++|.++...... .++..++..++.++++.+..||...
T Consensus 106 me~i~G~~l~~~~~~-----~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (320)
T 3r70_A 106 MKYIKGERITYEQYH-----KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQL 180 (320)
T ss_dssp EECCCCBCCCHHHHT-----TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred EeecCCccccccccc-----cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccc
Confidence 999999888643321 1566677778888888888888321
Q ss_pred -------------------------CCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 924 -------------------------RPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 924 -------------------------~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
...++|+|++|.||+++.+..+.|+||+.+...
T Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~ 238 (320)
T 3r70_A 181 LTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVG 238 (320)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEE
T ss_pred ccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccC
Confidence 124599999999999999766799999998653
No 417
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=4e-08 Score=104.92 Aligned_cols=67 Identities=27% Similarity=0.319 Sum_probs=36.4
Q ss_pred cccccccEEEccCCccCCC--CChhhcccccccEEecccCcccccCCcCCCCCC--CCCeeecCCCcCccCCC
Q 001274 501 GKLRNLERLHLSENYFVGY--IPSEVGNLEHLVTFNISSNSLSGTIPHELGNCV--NLQRLDLSRNQFTGSAP 569 (1109)
Q Consensus 501 ~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p 569 (1109)
.++++|+.|+|++|+|+++ +|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3455666666666666652 234555566666666666666543 2233333 56666666666654433
No 418
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.30 E-value=3.6e-08 Score=100.37 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=73.3
Q ss_pred CCccccCCCCCceEEccCC-cccccCCc----hhhccccceEEEccccccccc----ccccccCcCCCceEEeecCCCCC
Q 001274 112 IPTDLANCSSLEILDLCTN-RLHGVIPF----QLFFINTLRKLYLCENYIFGE----IPEEIGNLTSLEELVIYSNNLTG 182 (1109)
Q Consensus 112 ~p~~l~~l~~L~~L~Ls~n-~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~ 182 (1109)
+...+...+.|++|+|++| .+...... .+...++|++|+|++|.|... +...+...++|++|+|++|.|++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4455677888999999998 88764333 334457788888888887653 34445556777777777777764
Q ss_pred C----CCcccccccccceecc--ccccccCCCCccccccccchhhhcccccccccCchhhhccccccceeccccccc
Q 001274 183 A----IPASISKLRQLRVIRA--GHNSLSGPIPPEISECEGLEVLGLAQNSLEGFLPSELEKLRNLTDLILWQNHLS 253 (1109)
Q Consensus 183 ~----~p~~~~~l~~L~~L~l--~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 253 (1109)
. +...+...+.|++|+| ++|.|+..... .+...+...++|++|+|++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~--------------------~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEM--------------------EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH--------------------HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH--------------------HHHHHHHhCCCcCEEeccCCCCC
Confidence 3 2333444444555555 44444421111 12233445567777777777665
No 419
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.19 E-value=7.5e-06 Score=88.80 Aligned_cols=135 Identities=21% Similarity=0.150 Sum_probs=99.3
Q ss_pred eEecCCcc-eEEEEEec-CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC-CCceeeEEEEEEeCCceEEEEEeccCC
Q 001274 809 VIGRGACG-TVYKATLA-NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR-HRNIVKLYGFCYHQDSNLLLYEYMENG 885 (1109)
Q Consensus 809 ~lG~G~fg-~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g 885 (1109)
.+..|..| .||+.... +++.+++|+-.. .....+.+|+..++.+. +--+.++++++.+.+..++|||+++|.
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~-----~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~ 105 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG-----SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGK 105 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEET-----HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSE
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCC-----CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCc
Confidence 45667666 69998765 467788988752 23456888999988874 334678888999999999999999998
Q ss_pred CHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhc-------------------------------------------
Q 001274 886 SLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYD------------------------------------------- 922 (1109)
Q Consensus 886 sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~------------------------------------------- 922 (1109)
++.+..... ......++.++++.+..||..
T Consensus 106 ~~~~~~~~~-------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (272)
T 4gkh_A 106 TAFQVLEEY-------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQ 178 (272)
T ss_dssp EHHHHHHHC-------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHH
T ss_pred cccccccCC-------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHH
Confidence 887665432 123345666777777777732
Q ss_pred ------------CCCCeEecCCCCCceeeCCCCceEEeecccccc
Q 001274 923 ------------CRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 923 ------------~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~ 955 (1109)
....++|+|+.+.||+++.++.+-|+||+.+..
T Consensus 179 ~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 179 VWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp HHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 012389999999999999887778999998863
No 420
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.19 E-value=8.1e-06 Score=89.04 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=60.2
Q ss_pred CCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCC---ceeeEEEEEEeCCceEEEEEec
Q 001274 806 EGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHR---NIVKLYGFCYHQDSNLLLYEYM 882 (1109)
Q Consensus 806 ~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lv~e~~ 882 (1109)
..+.||.|.++.||+++..+|+.++||+..... ......+.+|++.++.+++. .+.+++++. ..++||||+
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~--~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l 92 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDA--PALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWV 92 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTC--CCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECC
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCC--cchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEec
Confidence 346799999999999998889999999865321 22346789999999999765 577887763 479999999
Q ss_pred cCCCH
Q 001274 883 ENGSL 887 (1109)
Q Consensus 883 ~~gsL 887 (1109)
+++.+
T Consensus 93 ~g~~~ 97 (288)
T 3d1u_A 93 DERPP 97 (288)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 99874
No 421
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.07 E-value=1.4e-05 Score=88.25 Aligned_cols=136 Identities=22% Similarity=0.211 Sum_probs=93.9
Q ss_pred CceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCC---ceeeEEEEEE-eCCceEEEEEec
Q 001274 807 GAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHR---NIVKLYGFCY-HQDSNLLLYEYM 882 (1109)
Q Consensus 807 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~e~~ 882 (1109)
.+.++.|....||+. ++.+++|+.. .......+.+|+++++.+.+. .+.+.+.++. ..+..++||||+
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~----~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i 95 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPK----SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKV 95 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEES----SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECC
T ss_pred eeecCCCcceeEEEE----CCEEEEEecC----CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEecc
Confidence 356888999999988 5668888743 223456788999999998642 3566666664 345678999999
Q ss_pred cCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhc----------------------------------------
Q 001274 883 ENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYD---------------------------------------- 922 (1109)
Q Consensus 883 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---------------------------------------- 922 (1109)
+|..+.+.... .++..+...++.++++.+..||..
T Consensus 96 ~G~~l~~~~~~-----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (306)
T 3tdw_A 96 QGQILGEDGMA-----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRD 170 (306)
T ss_dssp CSEECHHHHHT-----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred CCeECchhhhh-----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 99888663211 134444555555555555555521
Q ss_pred -----------------CCCCeEecCCCCCceeeCC---CCc-eEEeecccccc
Q 001274 923 -----------------CRPHIIHRDIKSNNILLDE---EFQ-AHVGDFGLAKL 955 (1109)
Q Consensus 923 -----------------~~~~ivH~Dlkp~NIll~~---~~~-~kl~DFG~a~~ 955 (1109)
....++|+|+++.||+++. ++. +.|+||+.+..
T Consensus 171 ~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 171 YLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 1346799999999999987 455 48999998864
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.00 E-value=1.7e-05 Score=89.69 Aligned_cols=143 Identities=13% Similarity=0.140 Sum_probs=89.3
Q ss_pred CCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCc--eeeEEEEEEeC-CceEEEEEec
Q 001274 806 EGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRN--IVKLYGFCYHQ-DSNLLLYEYM 882 (1109)
Q Consensus 806 ~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~-~~~~lv~e~~ 882 (1109)
..+.++.|....+|+.+. +++.+++|.... ...+.+|+.+++.+.... +.+++.++... +..++||||+
T Consensus 45 ~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~-------~~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l 116 (362)
T 3ovc_A 45 DLMQLSEGEESRAFSFDV-GGRGYVLRVNSC-------ADGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRA 116 (362)
T ss_dssp EEEEEEECSSEEEEEEEE-TTEEEEEEEESC-------CHHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECC
T ss_pred eEEECCCCCcceEEEEEE-CCcEEEEEeCCc-------hhhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEec
Confidence 356789999999999986 478899987741 135888988888885433 55677776654 5679999999
Q ss_pred cCCCHHHH------------------hccCCCC--CC------------CChHHH---------------------HHHH
Q 001274 883 ENGSLGEQ------------------LHGNKQT--CL------------LDWDAR---------------------YRIA 909 (1109)
Q Consensus 883 ~~gsL~~~------------------l~~~~~~--~~------------l~~~~~---------------------~~i~ 909 (1109)
+|.++.+. ++..... .. -.|.+. ....
T Consensus 117 ~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (362)
T 3ovc_A 117 QGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVA 196 (362)
T ss_dssp CSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence 98665321 1111000 00 001101 0111
Q ss_pred HHHHHHHHHHhhc-CCCCeEecCCCCCceeeCCCCceEEeeccccccc
Q 001274 910 LGAAEGLCYLHYD-CRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLI 956 (1109)
Q Consensus 910 ~~i~~~l~~LH~~-~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~ 956 (1109)
..+...++++... ....++|+|+++.||+++.++.+.|+||+.+..-
T Consensus 197 ~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~g 244 (362)
T 3ovc_A 197 QALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG 244 (362)
T ss_dssp HHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEE
T ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccC
Confidence 1112222222211 1256899999999999988777889999988754
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=97.79 E-value=2.7e-05 Score=88.21 Aligned_cols=82 Identities=6% Similarity=0.039 Sum_probs=55.1
Q ss_pred ceE-ecCCcceEEEEEec-------CCcEEEEEEeeccCC-CcchhHHHHHHHHHhccCC-C--CceeeEEEEEEeC---
Q 001274 808 AVI-GRGACGTVYKATLA-------NGEVIAVKKIKLRGE-GATADNSFLAEISTLGKIR-H--RNIVKLYGFCYHQ--- 872 (1109)
Q Consensus 808 ~~l-G~G~fg~Vy~~~~~-------~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~--- 872 (1109)
+.| +.|....+|+.... +++.+++|+...... .......+.+|+.+++.+. + -.+.+++.++.+.
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~ 105 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL 105 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence 467 78889999998754 266788887642210 0001245778888888874 2 3467788777655
Q ss_pred CceEEEEEeccCCCHHH
Q 001274 873 DSNLLLYEYMENGSLGE 889 (1109)
Q Consensus 873 ~~~~lv~e~~~~gsL~~ 889 (1109)
+..++||||++|..+.+
T Consensus 106 g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 106 GTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp SSCEEEEECCCCBCCCB
T ss_pred CCceEEEEecCCCChhh
Confidence 35689999999877653
No 424
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.64 E-value=1.3e-05 Score=79.24 Aligned_cols=81 Identities=7% Similarity=0.075 Sum_probs=36.3
Q ss_pred ccceeecccCccCCCCCccccCCCCCceEEccCC-cccccCCchhhcc----ccceEEEccccc-ccccccccccCcCCC
Q 001274 97 RLVEFNISMNFVTGSIPTDLANCSSLEILDLCTN-RLHGVIPFQLFFI----NTLRKLYLCENY-IFGEIPEEIGNLTSL 170 (1109)
Q Consensus 97 ~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~L 170 (1109)
+|+.||++++.++..--..+..|++|++|+|++| .+++..-..+..+ ++|++|+|++|. ++..--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 4555555555555443344555555555555555 2444333333332 234444444432 333322333444444
Q ss_pred ceEEeec
Q 001274 171 EELVIYS 177 (1109)
Q Consensus 171 ~~L~L~~ 177 (1109)
++|+|++
T Consensus 142 ~~L~L~~ 148 (176)
T 3e4g_A 142 KYLFLSD 148 (176)
T ss_dssp CEEEEES
T ss_pred CEEECCC
Confidence 4444444
No 425
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.60 E-value=2.7e-05 Score=76.90 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=71.0
Q ss_pred CCCceEEccCCcccccCCchhhccccceEEEccccc-ccccccccccCc----CCCceEEeecC-CCCCCCCcccccccc
Q 001274 120 SSLEILDLCTNRLHGVIPFQLFFINTLRKLYLCENY-IFGEIPEEIGNL----TSLEELVIYSN-NLTGAIPASISKLRQ 193 (1109)
Q Consensus 120 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~L~~n-~l~~~~p~~~~~l~~ 193 (1109)
-+|++|||+++.++...-..+..+++|++|+|++|. ++..--..|+.+ ++|++|+|++| ++|+..-..++++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999988877788889999999999985 776655667664 47999999997 488777777889999
Q ss_pred cceecccccc-cc
Q 001274 194 LRVIRAGHNS-LS 205 (1109)
Q Consensus 194 L~~L~l~~n~-l~ 205 (1109)
|+.|+++++. ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999875 44
No 426
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.49 E-value=0.00018 Score=80.77 Aligned_cols=140 Identities=20% Similarity=0.257 Sum_probs=79.0
Q ss_pred ceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC-----CCceeeEE-E--EEEeCCceEEEE
Q 001274 808 AVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR-----HRNIVKLY-G--FCYHQDSNLLLY 879 (1109)
Q Consensus 808 ~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~l~-~--~~~~~~~~~lv~ 879 (1109)
+.|+.|..+.||++...+| .+++|+... . ...+..|+.+++.+. .|.++... | +....+..++||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~---~---~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~ 110 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHR---P---EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVY 110 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECS---C---HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEE
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCC---C---HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEE
Confidence 3456677899999987655 488998863 1 223344555555442 34433310 0 123456778999
Q ss_pred EeccCCCHH--------------HHhcc----CC-C-C-----CCCChHHH-----------------------------
Q 001274 880 EYMENGSLG--------------EQLHG----NK-Q-T-----CLLDWDAR----------------------------- 905 (1109)
Q Consensus 880 e~~~~gsL~--------------~~l~~----~~-~-~-----~~l~~~~~----------------------------- 905 (1109)
||++|..+. ..++. .. . . ..-.|...
T Consensus 111 ~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 190 (346)
T 2q83_A 111 DWIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQ 190 (346)
T ss_dssp ECCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred EeecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 999986542 01111 10 0 0 00122211
Q ss_pred --HHHHHHHHHHHHHHhh----------cCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 906 --YRIALGAAEGLCYLHY----------DCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 906 --~~i~~~i~~~l~~LH~----------~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
..+...+.+++++|+. .....++|+|+++.||+++.++.+.|+||+.+.
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 191 EIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 0111223445666652 125789999999999999888899999999875
No 427
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.49 E-value=8.9e-06 Score=81.97 Aligned_cols=90 Identities=20% Similarity=0.132 Sum_probs=61.0
Q ss_pred cccccCccccceeecccC-ccCC----CCCccccCCCCCceEEccCCcccccCCchhh----ccccceEEEccccccccc
Q 001274 89 SPRICDLPRLVEFNISMN-FVTG----SIPTDLANCSSLEILDLCTNRLHGVIPFQLF----FINTLRKLYLCENYIFGE 159 (1109)
Q Consensus 89 ~~~~~~l~~L~~L~ls~n-~~~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~----~l~~L~~L~L~~n~l~~~ 159 (1109)
...+.+-+.|+.|+|++| .+.. .+...+..-+.|+.|+|++|++.+.....|. .-+.|++|+|++|.|...
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 334455677888888875 6653 2455667777888888888888765444443 457788888888888754
Q ss_pred ----ccccccCcCCCceEEeecC
Q 001274 160 ----IPEEIGNLTSLEELVIYSN 178 (1109)
Q Consensus 160 ----~p~~l~~l~~L~~L~L~~n 178 (1109)
+.+.+..-+.|++|+|++|
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCC
Confidence 3445666667888888754
No 428
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.45 E-value=0.00041 Score=79.59 Aligned_cols=77 Identities=12% Similarity=0.088 Sum_probs=49.7
Q ss_pred CceEecCCcceEEEEEec-CCcEEEEEEeeccCC----C-cchhHHHHHHHHHhccCCC--C-ceeeEEEEEEeCCceEE
Q 001274 807 GAVIGRGACGTVYKATLA-NGEVIAVKKIKLRGE----G-ATADNSFLAEISTLGKIRH--R-NIVKLYGFCYHQDSNLL 877 (1109)
Q Consensus 807 ~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~----~-~~~~~~~~~E~~~l~~l~h--~-niv~l~~~~~~~~~~~l 877 (1109)
.+.+|.|.++.||+++.. +++.|+||....... . ......+..|+++++.+.. + .+.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 357899999999999754 468899998653211 0 1123456788888887632 3 34455543 4556789
Q ss_pred EEEeccCC
Q 001274 878 LYEYMENG 885 (1109)
Q Consensus 878 v~e~~~~g 885 (1109)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999764
No 429
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.38 E-value=0.00087 Score=73.54 Aligned_cols=138 Identities=20% Similarity=0.219 Sum_probs=91.8
Q ss_pred CceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC---CCceeeEEEEEEeCCceEEEEEecc
Q 001274 807 GAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR---HRNIVKLYGFCYHQDSNLLLYEYME 883 (1109)
Q Consensus 807 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~ 883 (1109)
.+.|+.|....+|+.... ++.+++|+.... ....+..|++.++.+. ...+.+++.++...+..++||||++
T Consensus 41 ~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~~-----~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~ 114 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLINDE-VQTVFVKINERS-----YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALN 114 (312)
T ss_dssp EEEECCSSSSEEEEEESS-SCEEEEEEEEGG-----GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCC
T ss_pred eEEeCCccceeeeEEEEC-CCeEEEEeCCcc-----cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEecc
Confidence 457899999999999874 678888887622 3566889999988883 3568888888888888999999999
Q ss_pred CCCHH--------H---HhccCCC--CC-----------------CCChHHHH---HHHH----------------HHHH
Q 001274 884 NGSLG--------E---QLHGNKQ--TC-----------------LLDWDARY---RIAL----------------GAAE 914 (1109)
Q Consensus 884 ~gsL~--------~---~l~~~~~--~~-----------------~l~~~~~~---~i~~----------------~i~~ 914 (1109)
+..+. + .++.... .- .-+|.... ++.. .+++
T Consensus 115 G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~ 194 (312)
T 3jr1_A 115 KSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQ 194 (312)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 87642 1 1222211 00 02344321 1111 1111
Q ss_pred H-HHHHhh-cCCCCeEecCCCCCceeeCCCCceEEeecc
Q 001274 915 G-LCYLHY-DCRPHIIHRDIKSNNILLDEEFQAHVGDFG 951 (1109)
Q Consensus 915 ~-l~~LH~-~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG 951 (1109)
. ...|.. .....++|+|+.+.|++++.++ +.|.||+
T Consensus 195 ~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 195 IVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 1 223321 1256899999999999999887 8899974
No 430
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.17 E-value=0.0016 Score=70.98 Aligned_cols=79 Identities=22% Similarity=0.288 Sum_probs=56.0
Q ss_pred CCCCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC-C--CceeeEEEEEEeCCceEEEE
Q 001274 803 NFSEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR-H--RNIVKLYGFCYHQDSNLLLY 879 (1109)
Q Consensus 803 ~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~~~~~lv~ 879 (1109)
+....+.+|.|..+.||+.+..+|+.|++|+..... ......|..|+..|+.+. . --+.+++++ +..++||
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~--~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~lv~ 89 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDA--PALDGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTLAM 89 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTC--CCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEEEE
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCC--cchhhHHHHHHHHHHHHHhhCCCCcceEEec----cCceEEE
Confidence 344457799999999999999999999999865322 223346788999888773 2 134455543 2358999
Q ss_pred EeccCCCH
Q 001274 880 EYMENGSL 887 (1109)
Q Consensus 880 e~~~~gsL 887 (1109)
||++++..
T Consensus 90 e~l~~~~~ 97 (288)
T 3f7w_A 90 EWVDERPP 97 (288)
T ss_dssp ECCCCCCC
T ss_pred EeecccCC
Confidence 99987653
No 431
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.09 E-value=0.00063 Score=78.63 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=49.9
Q ss_pred CCCeEecCCCCCceeeCCCCceEEeeccccccccCCCCCCccccc--cccceeccccccCCC---CCccchhHHHHHHHH
Q 001274 924 RPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPYSKSMSAIA--GSYGYIAPEYAYTMK---VTEKCDIYSFGVVLL 998 (1109)
Q Consensus 924 ~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~--gt~~y~aPE~~~~~~---~~~~~DvwSlGvll~ 998 (1109)
...++|+|+++.|||++.++ ++++||+.+...... .+..... -...|.+|+...... -....++......+|
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~--~Dla~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMG--FDIGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTW 307 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHH--HHHHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchH--HHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHH
Confidence 67899999999999999876 999999988753211 0111111 123467776554211 122355667888888
Q ss_pred HHHhCC
Q 001274 999 ELITGK 1004 (1109)
Q Consensus 999 elltg~ 1004 (1109)
+.+++.
T Consensus 308 ~~y~~~ 313 (420)
T 2pyw_A 308 NLFNKR 313 (420)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 432
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.98 E-value=0.0051 Score=68.26 Aligned_cols=160 Identities=12% Similarity=0.102 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHhcCCCC-----CceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCC--ce
Q 001274 790 EGFKYHNLLEATGNFSE-----GAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHR--NI 862 (1109)
Q Consensus 790 ~~~~~~~~~~~~~~~~~-----~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~--ni 862 (1109)
...+...+......|.. ...++ |....||++...+|+.+++|..... ......+..|..+++.+... .+
T Consensus 9 ~~l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~---~~~~~~~~~E~~~~~~L~~~g~~v 84 (328)
T 1zyl_A 9 QTLHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPE---RWTADQILEEHQFALQLVNDEVPV 84 (328)
T ss_dssp CCCCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTT---TSCHHHHHHHHHHHHHHHHTTCSB
T ss_pred CCCCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCC---CCCHHHHHHHHHHHHHHHHcCCee
Confidence 33444444444443422 34577 8888999998777878999988622 12345667788877776321 23
Q ss_pred eeEEEE-----EEeCCceEEEEEeccCCCHH-----HH---------hcc----CC--CCCCCChHHH----HH------
Q 001274 863 VKLYGF-----CYHQDSNLLLYEYMENGSLG-----EQ---------LHG----NK--QTCLLDWDAR----YR------ 907 (1109)
Q Consensus 863 v~l~~~-----~~~~~~~~lv~e~~~~gsL~-----~~---------l~~----~~--~~~~l~~~~~----~~------ 907 (1109)
++++.. ....+..++||||++|..+. .+ ++. .. .....++... ..
T Consensus 85 p~~~~~~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (328)
T 1zyl_A 85 AAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDAT 164 (328)
T ss_dssp CCCCCBTTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCS
T ss_pred cceeecCCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcC
Confidence 333332 12345567899999875432 00 111 00 0001121111 00
Q ss_pred ---------HHHHHHHHHHHHhhc----CCCCeEecCCCCCceeeCCCCceEEeecccccc
Q 001274 908 ---------IALGAAEGLCYLHYD----CRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 908 ---------i~~~i~~~l~~LH~~----~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~ 955 (1109)
+...+.+.++.+... ....++|+|+++.||+++ + .+.|+||+.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 165 LIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp SSCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 011111222222211 245789999999999999 4 899999998764
No 433
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=96.94 E-value=0.0018 Score=70.98 Aligned_cols=73 Identities=7% Similarity=0.062 Sum_probs=45.3
Q ss_pred CCCceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCce-eeEEEEEEeCCceEEEEEec-
Q 001274 805 SEGAVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNI-VKLYGFCYHQDSNLLLYEYM- 882 (1109)
Q Consensus 805 ~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~- 882 (1109)
.-.+.|+.|....+|++ +.+++|+..... .......+|+.+++.+...++ .+++++ +.+..++|+||+
T Consensus 21 ~~i~~l~gG~tN~~~~~-----~~~vlR~~~~~~---~~~~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~ 90 (301)
T 3dxq_A 21 TGPLERLGGLTNLVFRA-----GDLCLRIPGKGT---EEYINRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIA 90 (301)
T ss_dssp CSCEEEESCSSEEEEEE-----TTEEEEEECC-------CCCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCT
T ss_pred cceeEcCCcccccccee-----eeEEEECCCCCc---cceeCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecC
Confidence 33678999999999999 458888775321 111223567777776632222 355543 444568999999
Q ss_pred cCCCH
Q 001274 883 ENGSL 887 (1109)
Q Consensus 883 ~~gsL 887 (1109)
++.++
T Consensus 91 ~g~~l 95 (301)
T 3dxq_A 91 GAQTM 95 (301)
T ss_dssp TCEEC
T ss_pred CCccC
Confidence 65444
No 434
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.89 E-value=8.8e-05 Score=74.69 Aligned_cols=68 Identities=21% Similarity=0.088 Sum_probs=39.4
Q ss_pred cccCCCCCceEEccCC-cccccCC----chhhccccceEEEccccccccc----ccccccCcCCCceEEeecCCCCC
Q 001274 115 DLANCSSLEILDLCTN-RLHGVIP----FQLFFINTLRKLYLCENYIFGE----IPEEIGNLTSLEELVIYSNNLTG 182 (1109)
Q Consensus 115 ~l~~l~~L~~L~Ls~n-~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~ 182 (1109)
.+.+-+.|++|+|++| ++..... ..+..-+.|+.|+|++|.|... +.+.+..-+.|++|+|++|.|++
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 4455567888888875 6664322 2333445666666666666543 23334455666666666666653
No 435
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.75 E-value=0.0035 Score=69.76 Aligned_cols=141 Identities=16% Similarity=0.129 Sum_probs=72.4
Q ss_pred eEecCCcce-EEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCC--CceeeEEEEEEeCCceEEEEEeccCC
Q 001274 809 VIGRGACGT-VYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRH--RNIVKLYGFCYHQDSNLLLYEYMENG 885 (1109)
Q Consensus 809 ~lG~G~fg~-Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lv~e~~~~g 885 (1109)
.++.|+... +|+....+++.+++|...... ...+..|+.+++.+.. -.+.+++.+.. +.-+++||++.+.
T Consensus 25 ~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~-----~~~~~~e~~~l~~L~~~g~~vP~v~~~d~--~~g~ll~e~l~~~ 97 (333)
T 3csv_A 25 PLAGDASSRRYQRLRSPTGAKAVLMDWSPEE-----GGDTQPFVDLAQYLRNLDISAPEIYAEEH--ARGLLLIEDLGDA 97 (333)
T ss_dssp C--------CCEEEECTTCCEEEEEECCTTT-----TCCSHHHHHHHHHHHHTTCBCCCEEEEET--TTTEEEECCCCSC
T ss_pred ECCCCCCCceEEEEEcCCCCeEEEEECCCCC-----CccccHHHHHHHHHHhCCCCCCceeeecC--CCCEEEEeeCCCc
Confidence 455555544 667766446777777554211 1234466776666632 23455666533 2337899999776
Q ss_pred CHHHHhccCCC---------------------C--CCCChHHHH-------H-------------HHHHHHHHHHHHh--
Q 001274 886 SLGEQLHGNKQ---------------------T--CLLDWDARY-------R-------------IALGAAEGLCYLH-- 920 (1109)
Q Consensus 886 sL~~~l~~~~~---------------------~--~~l~~~~~~-------~-------------i~~~i~~~l~~LH-- 920 (1109)
.+.+++..... . ..++..... . ....+.+.++.+.
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~ 177 (333)
T 3csv_A 98 LFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSA 177 (333)
T ss_dssp BHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 66544322110 0 001111100 0 0001111222221
Q ss_pred -hcCCCCeEecCCCCCceeeCCC----CceEEeeccccccc
Q 001274 921 -YDCRPHIIHRDIKSNNILLDEE----FQAHVGDFGLAKLI 956 (1109)
Q Consensus 921 -~~~~~~ivH~Dlkp~NIll~~~----~~~kl~DFG~a~~~ 956 (1109)
......++|||+.+.|||++.+ +.+.|+||+.+...
T Consensus 178 ~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G 218 (333)
T 3csv_A 178 QLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG 218 (333)
T ss_dssp HCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred cccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence 1125689999999999999875 68999999988743
No 436
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=96.59 E-value=0.0051 Score=68.03 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=85.4
Q ss_pred CHHHHHHHhcCCCCC-----ceEecCCcceEEEEEecCCcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCc--eeeE
Q 001274 793 KYHNLLEATGNFSEG-----AVIGRGACGTVYKATLANGEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRN--IVKL 865 (1109)
Q Consensus 793 ~~~~~~~~~~~~~~~-----~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l 865 (1109)
+.+++.....+|... +.|+.|....+|+....++ .+++|..... .....+..|+.+++.+...+ +.++
T Consensus 8 ~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~----~~~~~l~~e~~~l~~L~~~g~~vP~~ 82 (322)
T 2ppq_A 8 TEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR----VEKNDLPFFLGLMQHLAAKGLSCPLP 82 (322)
T ss_dssp CHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-------CCHHHHHHHHHHHHHHTTCCCCCB
T ss_pred CHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC----CCHHHHHHHHHHHHHHHHCCCCCCcc
Confidence 344455555556542 3566788899999987655 5788887632 12334566777776663212 2222
Q ss_pred EEE------EEeCCceEEEEEeccCCCHHH--------------HhccC----CCC-----CCCChHHHHH---------
Q 001274 866 YGF------CYHQDSNLLLYEYMENGSLGE--------------QLHGN----KQT-----CLLDWDARYR--------- 907 (1109)
Q Consensus 866 ~~~------~~~~~~~~lv~e~~~~gsL~~--------------~l~~~----~~~-----~~l~~~~~~~--------- 907 (1109)
+.. ....+..+++|+|++|..+.. .++.. ... ....|.....
T Consensus 83 ~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 162 (322)
T 2ppq_A 83 LPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEV 162 (322)
T ss_dssp CCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGT
T ss_pred cCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhh
Confidence 211 123456689999999865321 01110 100 0011222100
Q ss_pred ---HHHHHHHHHHHHhhc----CCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 908 ---IALGAAEGLCYLHYD----CRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 908 ---i~~~i~~~l~~LH~~----~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
+...+.+.+++++.. ...+++|+|+++.||++++++.+.|+||+.+.
T Consensus 163 ~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 163 EKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp STTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 011133445555421 14579999999999999987666899999876
No 437
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.44 E-value=0.004 Score=70.16 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=82.3
Q ss_pred ceEecCCcceEEEEEec--------CCcEEEEEEeeccCCCcchhHHHHHHHHHhccCC-CCceeeEEEEEEeCCceEEE
Q 001274 808 AVIGRGACGTVYKATLA--------NGEVIAVKKIKLRGEGATADNSFLAEISTLGKIR-HRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 808 ~~lG~G~fg~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv 878 (1109)
+.+..|-...+|++... +++.|++|+... .........+|.++++.+. +.-..++++++.. .+|
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~---~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v 128 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGA---ILQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRL 128 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC------CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCC---ccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccE
Confidence 46777888999999864 257899988632 1223456678999988874 3223566665543 399
Q ss_pred EEeccCCCHHHH-----------------hccCCC--CCCCC--hHHHHHHHHHHHH-------------------HHHH
Q 001274 879 YEYMENGSLGEQ-----------------LHGNKQ--TCLLD--WDARYRIALGAAE-------------------GLCY 918 (1109)
Q Consensus 879 ~e~~~~gsL~~~-----------------l~~~~~--~~~l~--~~~~~~i~~~i~~-------------------~l~~ 918 (1109)
|||++|.++..- ++.... ..... +.++.++..++.. .++.
T Consensus 129 ~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (379)
T 3feg_A 129 EQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGN 208 (379)
T ss_dssp EECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHH
T ss_pred EEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHH
Confidence 999998654311 111110 01122 3444444443321 2233
Q ss_pred Hhh-----cCCCCeEecCCCCCceeeCCC----CceEEeecccccc
Q 001274 919 LHY-----DCRPHIIHRDIKSNNILLDEE----FQAHVGDFGLAKL 955 (1109)
Q Consensus 919 LH~-----~~~~~ivH~Dlkp~NIll~~~----~~~kl~DFG~a~~ 955 (1109)
|.. .....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 209 L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 209 LRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 321 124579999999999999876 7899999998863
No 438
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.38 E-value=0.0045 Score=71.37 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=48.4
Q ss_pred ceEecCCcceEEEEEecC--------CcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCc-eeeEEEEEEeCCceEEE
Q 001274 808 AVIGRGACGTVYKATLAN--------GEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRN-IVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 808 ~~lG~G~fg~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lv 878 (1109)
+.|+.|....||++...+ ++.|++|+.... . ....+.+|..+++.+...+ ..++++.+. + .+|
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~--~~~~li~E~~~l~~L~~~g~~P~l~~~~~--~--g~v 150 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--E--TESHLVAESVIFTLLSERHLGPKLYGIFS--G--GRL 150 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--C--CHHHHHHHHHHHHHHHHTTSSSCEEEEET--T--EEE
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--C--cHHHHHHHHHHHHHHHhCCCCCcEEEEeC--C--CEE
Confidence 467888899999998653 578999887421 1 1245668999888874333 356666543 2 389
Q ss_pred EEeccCCCH
Q 001274 879 YEYMENGSL 887 (1109)
Q Consensus 879 ~e~~~~gsL 887 (1109)
+||++|.++
T Consensus 151 ~e~l~G~~l 159 (429)
T 1nw1_A 151 EEYIPSRPL 159 (429)
T ss_dssp ECCCCEEEC
T ss_pred EEEeCCccc
Confidence 999986443
No 439
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.25 E-value=0.0035 Score=58.85 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=42.5
Q ss_pred hccCCcccc-ccccccccCccccceeecCCCccccCCchhhhccccceEEEccCccccccc
Q 001274 630 LNISHNNLS-GVIPYELGNLQMLEALYLDDNQLIGEIPASMGEQMSLLVCNLSNNNLVGTV 689 (1109)
Q Consensus 630 L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g~~ 689 (1109)
++.+++.|+ ..+|..+. .+|+.|||++|+|+...+..|..++.|++|+|++|++.+..
T Consensus 13 v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 567777776 24454432 46888999999998555566788888999999988887644
No 440
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.22 E-value=0.012 Score=68.01 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=46.9
Q ss_pred ceEecCCcceEEEEEecC-CcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCce-eeEEEEEEeCCceEEEEEeccCC
Q 001274 808 AVIGRGACGTVYKATLAN-GEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRNI-VKLYGFCYHQDSNLLLYEYMENG 885 (1109)
Q Consensus 808 ~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~g 885 (1109)
+.|+.|-...+|++...+ ++.|++|+..... ....+..+|..+++.+...++ .++++++. + .+||||++|.
T Consensus 114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~---~~~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~ 186 (458)
T 2qg7_A 114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKT---DEIINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGY 186 (458)
T ss_dssp EEECC--CEEEEEEEETTTTEEEEEEEECC-C---CSCSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSE
T ss_pred EEcCCCeEeEEEEEEECCCCceEEEEECCCCh---hhhcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCc
Confidence 568888899999998764 4788888774221 111123578888888854444 56776652 2 3699999875
Q ss_pred CH
Q 001274 886 SL 887 (1109)
Q Consensus 886 sL 887 (1109)
++
T Consensus 187 ~l 188 (458)
T 2qg7_A 187 AL 188 (458)
T ss_dssp EC
T ss_pred cC
Confidence 44
No 441
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.16 E-value=0.006 Score=57.27 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=19.6
Q ss_pred cceecccccccccccCcccCCCcccceeeccCcccc
Q 001274 578 LELLKLSDNKLTGAIPSSLGGLARLTELQMGGNIFS 613 (1109)
Q Consensus 578 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 613 (1109)
|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 444555555554444445555556666666666554
No 442
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.16 E-value=0.0054 Score=69.39 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=43.1
Q ss_pred ceEecCCcceEEEEEecC---------CcEEEEEEeeccCCCcchhHHHHHHHHHhccCCCCc-eeeEEEEEEeCCceEE
Q 001274 808 AVIGRGACGTVYKATLAN---------GEVIAVKKIKLRGEGATADNSFLAEISTLGKIRHRN-IVKLYGFCYHQDSNLL 877 (1109)
Q Consensus 808 ~~lG~G~fg~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~l 877 (1109)
+.++.|....+|++...+ ++.+++|+.... .........|.++++.+...+ +.++++.. . .++
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~---~~~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~ 111 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKH---VDELYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGR 111 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTT---GGGTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCC---ccceecHHHHHHHHHHHHhcCCCCceEEec--C--CcE
Confidence 357788888999998653 267888876521 111123457888887774323 34566543 2 378
Q ss_pred EEEeccCCCH
Q 001274 878 LYEYMENGSL 887 (1109)
Q Consensus 878 v~e~~~~gsL 887 (1109)
||||++|..+
T Consensus 112 v~e~i~G~~l 121 (369)
T 3c5i_A 112 IEEWLYGDPL 121 (369)
T ss_dssp EEECCCSEEC
T ss_pred EEEEecCCcC
Confidence 9999987543
No 443
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=95.70 E-value=0.017 Score=64.30 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=28.5
Q ss_pred CCCeEecCCCCCceeeCCCCceEEeecccccc
Q 001274 924 RPHIIHRDIKSNNILLDEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 924 ~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~ 955 (1109)
...++|+|+.+.||+++.++.+.++||+.+..
T Consensus 205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~ 236 (339)
T 3i1a_A 205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPML 236 (339)
T ss_dssp GCEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred CceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence 45799999999999999888999999988764
No 444
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=94.68 E-value=0.057 Score=60.96 Aligned_cols=144 Identities=18% Similarity=0.178 Sum_probs=82.3
Q ss_pred ceEecCCcceEEEEEecC--------CcEEEEEEeeccCCC----------cc------hhHHHHHHHHHhccCC-CCce
Q 001274 808 AVIGRGACGTVYKATLAN--------GEVIAVKKIKLRGEG----------AT------ADNSFLAEISTLGKIR-HRNI 862 (1109)
Q Consensus 808 ~~lG~G~fg~Vy~~~~~~--------~~~vavK~~~~~~~~----------~~------~~~~~~~E~~~l~~l~-h~ni 862 (1109)
+.|..|-...+|++..++ ++.|.+++.-..... .. ..+....|..+++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 456678888999998653 367888887432110 00 1122345888888774 4445
Q ss_pred eeEEEEEEeCCceEEEEEeccCCCHHH--H---------------hccCCC--CCCCC--hHHHHHHHHHHH--------
Q 001274 863 VKLYGFCYHQDSNLLLYEYMENGSLGE--Q---------------LHGNKQ--TCLLD--WDARYRIALGAA-------- 913 (1109)
Q Consensus 863 v~l~~~~~~~~~~~lv~e~~~~gsL~~--~---------------l~~~~~--~~~l~--~~~~~~i~~~i~-------- 913 (1109)
.++++++.. .+|+||++|.+|.. + ++.... ..... +....++..++.
T Consensus 138 Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 667766542 28999999755421 1 111110 11122 223333333221
Q ss_pred --------------HHHH----HHhh-cCCCCeEecCCCCCceeeCCC------CceEEeecccccc
Q 001274 914 --------------EGLC----YLHY-DCRPHIIHRDIKSNNILLDEE------FQAHVGDFGLAKL 955 (1109)
Q Consensus 914 --------------~~l~----~LH~-~~~~~ivH~Dlkp~NIll~~~------~~~kl~DFG~a~~ 955 (1109)
+-+. ++.. .....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 1122 2221 124579999999999999876 7899999998863
No 445
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=94.58 E-value=0.21 Score=50.46 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=75.1
Q ss_pred CCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccccccCCCCCCc
Q 001274 885 GSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAKLIDLPYSKSM 964 (1109)
Q Consensus 885 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~ 964 (1109)
-+|.+.|...+.. +++++++.++.|.+.+|.-.-.. ..+ ..+=+.|..|++..+|.|.+.+ +.+.
T Consensus 33 vSL~eIL~~~~~P--lsEEqaWALc~Qc~~~L~~~~~~-~~~-~~~i~~~~~i~l~~dG~V~f~~-~~s~---------- 97 (229)
T 2yle_A 33 LSLEEILRLYNQP--INEEQAWAVCYQCCGSLRAAARR-RQP-RHRVRSAAQIRVWRDGAVTLAP-AADD---------- 97 (229)
T ss_dssp EEHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHT-TCC-CCCCCSGGGEEEETTSCEEECC-C-------------
T ss_pred ccHHHHHHHcCCC--cCHHHHHHHHHHHHHHHHhhhhc-ccC-CceecCCcceEEecCCceeccc-cccc----------
Confidence 3789999877654 99999999999999998776211 011 1333457899999999988864 2111
Q ss_pred cccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCC-CCCcccCCcHHHHHHHhh
Q 001274 965 SAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSP-VQSLELGGDLVTWVRRSI 1024 (1109)
Q Consensus 965 ~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~p-f~~~~~~~~~~~~~~~~~ 1024 (1109)
.....+.|||... ...+.+.=|||+|+++|.-+--..| -+...-...+...+..+.
T Consensus 98 ---~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~e~eE~eLS~~LE~LL~~Mt 154 (229)
T 2yle_A 98 ---AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLKENEERELSPPLEQLIDHMA 154 (229)
T ss_dssp ------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCCTTEEECCCHHHHHHHHHHT
T ss_pred ---ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCCcccchhhCHHHHHHHHHHH
Confidence 1122477888653 3456788999999999999874433 333333344555554443
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=94.20 E-value=0.064 Score=61.20 Aligned_cols=73 Identities=10% Similarity=0.055 Sum_probs=47.2
Q ss_pred ceEecCCcceEEEEEecC--------CcEEEEEEeeccCCCcchhHHHHHHHHHhccCC-CCceeeEEEEEEeCCceEEE
Q 001274 808 AVIGRGACGTVYKATLAN--------GEVIAVKKIKLRGEGATADNSFLAEISTLGKIR-HRNIVKLYGFCYHQDSNLLL 878 (1109)
Q Consensus 808 ~~lG~G~fg~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv 878 (1109)
+.+..|-...+|+....+ ++.|++|+.... .....+..+|..+++.+. +.-..++++.+ . .+.|
T Consensus 76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~---t~~~idR~~E~~~l~~L~~~gi~P~l~~~~--~--~~~I 148 (424)
T 3mes_A 76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKH---VGKFYDSKVELDVFRYLSNINIAPNIIADF--P--EGRI 148 (424)
T ss_dssp EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCC---C-CCCCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEE
T ss_pred EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCC---cchhcCHHHHHHHHHHHHhcCCCCCEEEEc--C--CCEE
Confidence 467778888999998753 578888886422 122223457888887774 22234555433 2 3789
Q ss_pred EEeccCCCH
Q 001274 879 YEYMENGSL 887 (1109)
Q Consensus 879 ~e~~~~gsL 887 (1109)
|||++|.++
T Consensus 149 ~efI~G~~l 157 (424)
T 3mes_A 149 EEFIDGEPL 157 (424)
T ss_dssp EECCCSEEC
T ss_pred EEEeCCccC
Confidence 999998654
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=87.32 E-value=1.1 Score=50.64 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=25.5
Q ss_pred CeEecCCCCCceee------CCCCceEEeecccccc
Q 001274 926 HIIHRDIKSNNILL------DEEFQAHVGDFGLAKL 955 (1109)
Q Consensus 926 ~ivH~Dlkp~NIll------~~~~~~kl~DFG~a~~ 955 (1109)
.++|+|+.+.||++ +++..++++||..|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 46799999999999 4567899999998864
No 448
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=83.93 E-value=2.5 Score=42.64 Aligned_cols=124 Identities=10% Similarity=0.113 Sum_probs=82.2
Q ss_pred HHHHhccCCCCceeeEEEEEEeCCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCCeEe
Q 001274 850 EISTLGKIRHRNIVKLYGFCYHQDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLCYLHYDCRPHIIH 929 (1109)
Q Consensus 850 E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH 929 (1109)
|+..+.. .||+.++. .+-...+...+.|+.-+.+.=...+++ .+...+++++.+|+....+++ .-+|
T Consensus 36 el~LL~~-~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~ik~------~~~~eKlr~l~ni~~l~~~~~-----~r~t 102 (215)
T 4ann_A 36 LMYLLEQ-HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDNIKS------FTKNEKLRYLLNIKNLEEVNR-----TRYT 102 (215)
T ss_dssp GGGGGGS-CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGGGGG------SCHHHHHHHHHHGGGGGGGGG-----SSEE
T ss_pred HHHHHhc-cCCcccce-EEEEcccEEEEEEEcCcccCCHHHHHh------cCHHHHHHHHHHHHHHHHHhc-----CceE
Confidence 3444433 67888865 455555655555554432211122322 778899999999999887777 2388
Q ss_pred cCCCCCceeeCCCCceEEeeccccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCCC
Q 001274 930 RDIKSNNILLDEEFQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQS 1009 (1109)
Q Consensus 930 ~Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~~ 1009 (1109)
--++|+|++++.++.+++.-.|+...+ +|. .++...=.-.+=+++..+++++..|+.
T Consensus 103 f~L~P~NL~f~~~~~p~i~~RGik~~l------------------~P~-----~~~ee~fL~qyKAliiall~~K~~Fe~ 159 (215)
T 4ann_A 103 FVLAPDELFFTRDGLPIAKTRGLQNVV------------------DPL-----PVSEAEFLTRYKALVICAFNEKQSFDA 159 (215)
T ss_dssp CCCSGGGEEECTTSCEEESCCEETTTB------------------SCC-----CCCHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred EEEecceEEEcCCCCEEEEEccCccCC------------------CCC-----CCCHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 999999999999999999876654322 222 222333355677899999999998863
No 449
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=83.43 E-value=3.6 Score=41.56 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=78.9
Q ss_pred CCCceeeEEEEEEeCCceEEEEEeccCCCHHHHhccCCCCCCCChHHHHHHHHHHHHHHH-HHhhcCCCCeEecCCCCCc
Q 001274 858 RHRNIVKLYGFCYHQDSNLLLYEYMENGSLGEQLHGNKQTCLLDWDARYRIALGAAEGLC-YLHYDCRPHIIHRDIKSNN 936 (1109)
Q Consensus 858 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~-~LH~~~~~~ivH~Dlkp~N 936 (1109)
.||+. -..+-..++...+.++.-+++.=...++. ++..++++++.+|+.... +++ .-+|--++|+|
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~~------~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~N 114 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIRK------TTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPEN 114 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHHT------SCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGG
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHHh------cCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCce
Confidence 67877 33344566666666776544433333432 778899999999998877 666 45888999999
Q ss_pred eeeCCCCceEEeeccccccccCCCCCCccccccccceeccccccCCCCCccchhHHHHHHHHHHHhCCCCCC
Q 001274 937 ILLDEEFQAHVGDFGLAKLIDLPYSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKSPVQ 1008 (1109)
Q Consensus 937 Ill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvll~elltg~~pf~ 1008 (1109)
++++.++.+++.-.|+-.. ++|. .++...=.-.+=+++..++.++..|+
T Consensus 115 L~f~~~~~p~i~hRGi~~~------------------lpP~-----e~~ee~fl~qyKali~all~~K~~Fe 163 (219)
T 4ano_A 115 LMFNRALEPFFLHVGVKES------------------LPPD-----EWDDERLLREVKATVLALTEGEYRFD 163 (219)
T ss_dssp EEECTTCCEEESCCEETTT------------------BSSC-----SCCHHHHHHHHHHHHHHHTTCSSCHH
T ss_pred EEEeCCCcEEEEEcCCccc------------------CCCC-----CCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999987665432 2332 12222234567788888999988876
No 450
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=80.68 E-value=0.18 Score=58.45 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=17.9
Q ss_pred CCceEecCCcceEEEEEecC-CcEEEE------EEeeccCCCcchhHHHHHHHHHhccCCCCceeeEEEEEEe
Q 001274 806 EGAVIGRGACGTVYKATLAN-GEVIAV------KKIKLRGEGATADNSFLAEISTLGKIRHRNIVKLYGFCYH 871 (1109)
Q Consensus 806 ~~~~lG~G~fg~Vy~~~~~~-~~~vav------K~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 871 (1109)
..+++| ||.||+|.+.. ..+||| |..+......+....+.+|..+++..+|+|+++.+++...
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence 345566 99999998763 467888 7665433334445678899999999999999998887653
No 451
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=66.54 E-value=3.7 Score=29.60 Aligned_cols=17 Identities=12% Similarity=-0.082 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHhhhh
Q 001274 746 VIVGLISLSFIIGICWA 762 (1109)
Q Consensus 746 ~~~g~~~~~~i~~~~~~ 762 (1109)
+++|+++++++++.+|+
T Consensus 17 VVgGv~~~~ii~~~~~~ 33 (44)
T 2ks1_B 17 MVGALLLLLVVALGIGL 33 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 452
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=60.00 E-value=4.1 Score=29.30 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=6.8
Q ss_pred eehhhH-HHHHHHHHHHh
Q 001274 743 IISVIV-GLISLSFIIGI 759 (1109)
Q Consensus 743 ii~~~~-g~~~~~~i~~~ 759 (1109)
|.+.++ |++.++++++.
T Consensus 12 IA~gVVgGv~~v~ii~~~ 29 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLT 29 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHHHH
Confidence 333344 34444444333
No 453
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=53.56 E-value=7.4 Score=29.37 Aligned_cols=21 Identities=24% Similarity=0.629 Sum_probs=13.0
Q ss_pred eeehhhHHHHHHHHHHHhhhh
Q 001274 742 SIISVIVGLISLSFIIGICWA 762 (1109)
Q Consensus 742 ~ii~~~~g~~~~~~i~~~~~~ 762 (1109)
+++++++|++++++++++.|+
T Consensus 15 Ii~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 15 VLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566676666666666664
No 454
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=43.94 E-value=9.3 Score=28.72 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=13.2
Q ss_pred eeehhhHHHHHHHHHHHhhhh
Q 001274 742 SIISVIVGLISLSFIIGICWA 762 (1109)
Q Consensus 742 ~ii~~~~g~~~~~~i~~~~~~ 762 (1109)
+++++++|++++++++++.|+
T Consensus 12 Ii~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 12 ILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566677766666666664
No 455
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=43.52 E-value=9.1 Score=27.07 Aligned_cols=13 Identities=38% Similarity=0.416 Sum_probs=6.7
Q ss_pred eeehhhHHHHHHH
Q 001274 742 SIISVIVGLISLS 754 (1109)
Q Consensus 742 ~ii~~~~g~~~~~ 754 (1109)
++.++++|+++++
T Consensus 15 I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 15 VIGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHH
Confidence 3444555655544
No 456
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=38.76 E-value=12 Score=26.94 Aligned_cols=10 Identities=60% Similarity=1.039 Sum_probs=5.6
Q ss_pred eeehhhHHHH
Q 001274 742 SIISVIVGLI 751 (1109)
Q Consensus 742 ~ii~~~~g~~ 751 (1109)
.|.+.++|++
T Consensus 13 ~Ia~~vVGvl 22 (44)
T 2jwa_A 13 SIISAVVGIL 22 (44)
T ss_dssp HHHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 3556666643
No 457
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.56 E-value=59 Score=28.08 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=24.0
Q ss_pred ccCCCCCCCccccccceeecccccccccCCccccCCcccceecccc
Q 001274 444 LSGNIPPGLKTCRSLMQLMLGQNQLTGSLPIEFYNLQNLSALELYQ 489 (1109)
Q Consensus 444 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 489 (1109)
++.+....|.+|++|+.+.+-.+ ++.+-..+|.++.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344455555556655555543 3334455566666666665544
No 458
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.55 E-value=97 Score=26.67 Aligned_cols=12 Identities=8% Similarity=0.072 Sum_probs=4.4
Q ss_pred cccCCcccceec
Q 001274 475 EFYNLQNLSALE 486 (1109)
Q Consensus 475 ~~~~l~~L~~L~ 486 (1109)
+|.++++|+.+.
T Consensus 15 aF~~c~~L~~i~ 26 (100)
T 2lz0_A 15 LFAGNTVIREIT 26 (100)
T ss_dssp TTTTCTTCCCEE
T ss_pred HhcCCCCCcEEE
Confidence 333333333333
No 459
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=29.11 E-value=29 Score=27.27 Aligned_cols=23 Identities=26% Similarity=0.748 Sum_probs=10.6
Q ss_pred eeeeehhhHHHHHHHHHHHhhhh
Q 001274 740 LVSIISVIVGLISLSFIIGICWA 762 (1109)
Q Consensus 740 ~~~ii~~~~g~~~~~~i~~~~~~ 762 (1109)
++.++.+.+++.++.++++.||.
T Consensus 14 vvtv~viliavaalg~li~gcwc 36 (90)
T 1zza_A 14 VVTVIVILIAIAALGALILGCWC 36 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEehhHHHHHHHHHHHHHHHHH
Confidence 33333334444445555555554
No 460
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=34.29 E-value=12 Score=25.75 Aligned_cols=6 Identities=33% Similarity=0.579 Sum_probs=2.6
Q ss_pred ceecCC
Q 001274 763 MKCRKP 768 (1109)
Q Consensus 763 ~~~rk~ 768 (1109)
.+++||
T Consensus 31 ~w~qKP 36 (39)
T 2l6w_A 31 LWQKKP 36 (39)
Confidence 334444
No 461
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=28.06 E-value=2.3e+02 Score=33.25 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHH--HHHHHHhhcCCCCeEecCCCCCceeeCCCCceEEeeccccc
Q 001274 902 WDARYRIALGAA--EGLCYLHYDCRPHIIHRDIKSNNILLDEEFQAHVGDFGLAK 954 (1109)
Q Consensus 902 ~~~~~~i~~~i~--~~l~~LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DFG~a~ 954 (1109)
+..+..++..+| ..+.|+= || +|=+++|||++.+|++.=+|||.+-
T Consensus 454 ~~a~~nF~~S~A~ySvv~YIL-----Gi--gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 454 AEVMDTYVKSCAGYCVITYIL-----GV--GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----TC--CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred HHHHHHHHHHHHHHhHhheee-----ec--cCCCCcceeEcCCCCEeeeehHHhh
Confidence 445555555544 3456665 33 5779999999999999999999874
No 462
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=25.59 E-value=38 Score=26.35 Aligned_cols=7 Identities=14% Similarity=0.302 Sum_probs=3.1
Q ss_pred ceecCCC
Q 001274 763 MKCRKPA 769 (1109)
Q Consensus 763 ~~~rk~~ 769 (1109)
+++|++.
T Consensus 34 crhRrrq 40 (70)
T 2klu_A 34 SRHRRRQ 40 (70)
T ss_dssp SSCCSSS
T ss_pred HHHHHHH
Confidence 4444443
No 463
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.53 E-value=39 Score=23.46 Aligned_cols=9 Identities=56% Similarity=1.077 Sum_probs=3.8
Q ss_pred eehhhHHHH
Q 001274 743 IISVIVGLI 751 (1109)
Q Consensus 743 ii~~~~g~~ 751 (1109)
|.++++|.+
T Consensus 13 IAGiVvG~v 21 (38)
T 2k1k_A 13 IVAVIFGLL 21 (38)
T ss_dssp HHHHHHHHH
T ss_pred eeeeehHHH
Confidence 334444443
Done!