Query 001275
Match_columns 1109
No_of_seqs 1146 out of 7571
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 19:47:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.6E-96 1E-100 929.6 38.7 700 22-736 6-745 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.4E-79 1.5E-83 773.3 28.4 625 78-708 81-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-63 5.3E-68 625.4 36.8 590 77-685 10-623 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 6.8E-63 2.3E-67 619.6 37.5 580 58-637 3-624 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3.7E-58 1.3E-62 568.7 39.4 523 86-638 26-563 (606)
6 3t6q_A CD180 antigen; protein- 100.0 4.9E-58 1.7E-62 567.6 34.5 529 103-664 20-564 (606)
7 4eco_A Uncharacterized protein 100.0 1.8E-58 6.3E-63 571.1 23.9 500 25-563 27-600 (636)
8 3j0a_A TOLL-like receptor 5; m 100.0 3.8E-56 1.3E-60 569.2 39.0 526 123-711 8-564 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-56 3.7E-61 555.5 32.2 526 76-638 16-561 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 5.6E-57 1.9E-61 558.1 28.3 542 145-717 13-569 (606)
11 4ecn_A Leucine-rich repeat pro 100.0 2.3E-56 7.9E-61 559.9 33.7 501 23-561 264-862 (876)
12 3j0a_A TOLL-like receptor 5; m 100.0 9.2E-55 3.1E-59 556.4 38.7 521 77-639 10-564 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 1.9E-51 6.5E-56 504.9 27.8 516 169-712 9-536 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 4.7E-51 1.6E-55 501.4 29.0 497 87-616 22-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 9.4E-51 3.2E-55 496.2 25.9 489 58-591 3-514 (549)
16 4eco_A Uncharacterized protein 100.0 3.1E-51 1.1E-55 506.5 17.2 507 26-588 25-601 (636)
17 2z81_A CD282 antigen, TOLL-lik 100.0 2E-49 6.7E-54 484.6 26.8 484 100-615 10-514 (549)
18 4aoj_A High affinity nerve gro 100.0 4.8E-50 1.6E-54 449.9 15.4 265 819-1108 41-324 (329)
19 4gt4_A Tyrosine-protein kinase 100.0 3.9E-50 1.3E-54 446.3 13.8 258 820-1100 27-304 (308)
20 4ecn_A Leucine-rich repeat pro 100.0 4.8E-49 1.6E-53 493.7 24.8 365 297-714 435-847 (876)
21 4asz_A BDNF/NT-3 growth factor 100.0 2E-50 6.9E-55 446.6 10.1 258 819-1100 13-287 (299)
22 3omv_A RAF proto-oncogene seri 100.0 1.7E-49 5.8E-54 438.9 14.5 260 819-1101 36-299 (307)
23 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-48 6.7E-53 472.2 22.2 459 146-711 3-485 (520)
24 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-47 8.2E-52 474.8 32.4 551 45-612 10-581 (635)
25 2z7x_B TOLL-like receptor 1, v 100.0 4.2E-48 1.4E-52 469.3 21.1 451 122-612 3-482 (520)
26 4fih_A Serine/threonine-protei 100.0 3.8E-47 1.3E-51 425.1 18.7 252 819-1098 74-326 (346)
27 4ase_A Vascular endothelial gr 100.0 4.4E-48 1.5E-52 437.3 11.2 266 813-1100 58-345 (353)
28 3hmm_A TGF-beta receptor type- 100.0 6.7E-48 2.3E-52 429.8 11.0 268 819-1102 3-297 (303)
29 4aw0_A HPDK1, 3-phosphoinositi 100.0 2.6E-47 8.9E-52 419.9 15.2 249 819-1094 32-283 (311)
30 4g8a_A TOLL-like receptor 4; l 100.0 7.9E-46 2.7E-50 461.1 30.4 525 99-635 35-580 (635)
31 4b9d_A Serine/threonine-protei 100.0 1E-47 3.6E-52 430.3 11.4 252 819-1096 24-277 (350)
32 4g3f_A NF-kappa-beta-inducing 100.0 8.8E-47 3E-51 420.9 17.1 252 819-1100 58-314 (336)
33 3fpq_A Serine/threonine-protei 100.0 8.1E-47 2.8E-51 414.4 16.1 248 822-1098 29-285 (290)
34 4fie_A Serine/threonine-protei 100.0 5E-46 1.7E-50 426.2 20.3 252 819-1098 151-403 (423)
35 3hyh_A Carbon catabolite-derep 100.0 5E-46 1.7E-50 404.4 18.3 249 819-1098 13-265 (275)
36 4g31_A Eukaryotic translation 100.0 6.8E-46 2.3E-50 411.2 15.3 255 819-1098 5-282 (299)
37 3ubd_A Ribosomal protein S6 ki 100.0 5.7E-46 1.9E-50 409.6 12.3 251 819-1098 24-284 (304)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-44 4.4E-49 442.5 22.9 455 119-613 31-512 (562)
39 1jl5_A Outer protein YOPM; leu 100.0 5.7E-44 1.9E-48 422.2 23.0 426 190-717 10-439 (454)
40 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.4E-44 1.2E-48 438.7 21.1 451 74-566 34-513 (562)
41 1jl5_A Outer protein YOPM; leu 100.0 5.6E-43 1.9E-47 413.7 24.5 429 92-622 8-440 (454)
42 4f9c_A Cell division cycle 7-r 100.0 8.5E-43 2.9E-47 397.2 18.1 202 817-1030 19-253 (361)
43 3v47_A TOLL-like receptor 5B a 100.0 1.1E-41 3.8E-46 405.7 27.9 364 95-472 30-412 (455)
44 1ogq_A PGIP-2, polygalacturona 100.0 7.3E-43 2.5E-47 393.1 16.7 293 24-346 2-302 (313)
45 4b99_A Mitogen-activated prote 100.0 1.2E-42 4.2E-47 399.9 15.8 273 819-1099 54-348 (398)
46 3v47_A TOLL-like receptor 5B a 100.0 8.6E-41 2.9E-45 398.0 24.7 363 119-519 30-412 (455)
47 3uim_A Brassinosteroid insensi 100.0 7.6E-41 2.6E-45 379.8 19.9 292 805-1102 16-311 (326)
48 3v5w_A G-protein coupled recep 100.0 5.4E-41 1.8E-45 400.8 18.6 252 819-1098 189-452 (689)
49 3bz5_A Internalin-J, INLJ; leu 100.0 2.9E-40 9.9E-45 390.8 24.6 320 206-587 33-352 (457)
50 2qkw_B Protein kinase; three-h 100.0 6.1E-41 2.1E-45 379.6 16.2 276 816-1100 36-313 (321)
51 3uto_A Twitchin; kinase, muscl 100.0 2.5E-40 8.4E-45 399.9 18.0 254 819-1098 157-413 (573)
52 2nru_A Interleukin-1 receptor- 100.0 1.8E-39 6.3E-44 365.1 23.1 286 805-1101 11-305 (307)
53 3bz5_A Internalin-J, INLJ; leu 100.0 5.5E-39 1.9E-43 379.9 24.5 373 241-689 20-392 (457)
54 2psq_A Fibroblast growth facto 100.0 9E-40 3.1E-44 376.8 15.9 259 819-1100 81-362 (370)
55 3soc_A Activin receptor type-2 100.0 4.7E-40 1.6E-44 372.3 13.1 263 819-1100 24-316 (322)
56 3fxz_A Serine/threonine-protei 100.0 5.4E-39 1.9E-43 359.0 18.8 253 819-1099 20-273 (297)
57 3zgw_A Maternal embryonic leuc 100.0 6E-39 2E-43 365.0 18.5 253 818-1098 9-263 (347)
58 4euu_A Serine/threonine-protei 100.0 1.4E-38 4.9E-43 359.8 21.0 279 819-1103 9-310 (319)
59 3p86_A Serine/threonine-protei 100.0 2E-39 6.7E-44 364.5 12.5 259 818-1101 36-297 (309)
60 3s95_A LIMK-1, LIM domain kina 100.0 1.3E-38 4.6E-43 358.6 18.9 258 819-1100 10-280 (310)
61 2c30_A Serine/threonine-protei 100.0 4.9E-38 1.7E-42 355.3 23.4 265 807-1099 23-298 (321)
62 3fe3_A MAP/microtubule affinit 100.0 1.4E-38 4.7E-43 360.1 18.2 250 819-1098 15-267 (328)
63 3kul_A Ephrin type-A receptor 100.0 4.4E-39 1.5E-43 364.6 13.8 257 819-1100 49-311 (325)
64 3tki_A Serine/threonine-protei 100.0 4.7E-39 1.6E-43 363.9 13.3 257 819-1099 7-265 (323)
65 3vhe_A Vascular endothelial gr 100.0 2.2E-39 7.6E-44 373.1 10.2 269 810-1100 13-353 (359)
66 3cbl_A C-FES, proto-oncogene t 100.0 2.1E-39 7.1E-44 375.1 9.3 257 819-1100 114-372 (377)
67 1o6v_A Internalin A; bacterial 100.0 2.3E-37 7.8E-42 369.0 27.0 345 93-468 44-388 (466)
68 1luf_A Muscle-specific tyrosin 100.0 7.4E-39 2.5E-43 366.3 13.2 265 818-1105 46-338 (343)
69 2qol_A Ephrin receptor; recept 100.0 9.4E-39 3.2E-43 368.5 13.8 257 819-1100 45-307 (373)
70 1o6v_A Internalin A; bacterial 100.0 4.5E-37 1.5E-41 366.5 28.1 343 72-445 47-389 (466)
71 3qd2_B Eukaryotic translation 100.0 3.2E-38 1.1E-42 359.1 17.4 255 818-1097 5-327 (332)
72 1rjb_A FL cytokine receptor; k 100.0 1.4E-38 4.6E-43 364.2 14.3 265 818-1104 44-336 (344)
73 3tt0_A Basic fibroblast growth 100.0 1.4E-38 4.8E-43 369.0 14.6 259 819-1100 69-350 (382)
74 3sxs_A Cytoplasmic tyrosine-pr 100.0 2.6E-38 9E-43 348.2 16.0 256 819-1102 8-264 (268)
75 3poz_A Epidermal growth factor 100.0 1.4E-38 4.8E-43 361.0 13.9 256 819-1100 15-276 (327)
76 4hcu_A Tyrosine-protein kinase 100.0 1.3E-38 4.6E-43 350.8 13.2 254 819-1100 10-264 (269)
77 2yab_A Death-associated protei 100.0 1.1E-37 3.7E-42 357.0 21.0 255 818-1098 11-275 (361)
78 1o6l_A RAC-beta serine/threoni 100.0 1.4E-37 4.9E-42 352.7 21.6 251 819-1098 5-263 (337)
79 3lb7_A RAF proto-oncogene seri 100.0 2.8E-38 9.6E-43 354.9 15.6 262 819-1103 36-301 (307)
80 3niz_A Rhodanese family protei 100.0 9E-38 3.1E-42 351.6 19.5 268 819-1099 21-304 (311)
81 2ivs_A Proto-oncogene tyrosine 100.0 1.4E-38 4.9E-43 359.0 13.0 260 818-1100 22-309 (314)
82 3l9p_A Anaplastic lymphoma kin 100.0 6.1E-39 2.1E-43 369.6 9.3 259 819-1100 71-343 (367)
83 3q4u_A Activin receptor type-1 100.0 1.3E-37 4.4E-42 349.0 19.5 265 818-1100 7-300 (301)
84 4eqm_A Protein kinase; transfe 100.0 8.4E-38 2.9E-42 348.9 17.9 261 819-1102 11-275 (294)
85 1qcf_A Haematopoetic cell kina 100.0 2.2E-38 7.6E-43 375.7 13.3 262 819-1108 188-450 (454)
86 1t46_A HOMO sapiens V-KIT hard 100.0 3.6E-38 1.2E-42 355.6 13.9 261 819-1101 23-306 (313)
87 3ugc_A Tyrosine-protein kinase 100.0 1.3E-38 4.4E-43 356.0 10.0 274 819-1102 10-291 (295)
88 2y0a_A Death-associated protei 100.0 2.8E-37 9.5E-42 350.0 20.2 255 818-1098 10-274 (326)
89 3o0g_A Cell division protein k 100.0 1.5E-37 5E-42 346.9 17.4 273 819-1099 2-286 (292)
90 2pvf_A Fibroblast growth facto 100.0 5E-38 1.7E-42 357.8 13.6 260 818-1100 34-316 (334)
91 2pmi_A Negative RE, cyclin-dep 100.0 2.4E-37 8.2E-42 349.2 19.0 274 818-1098 4-296 (317)
92 3gen_A Tyrosine-protein kinase 100.0 4.4E-38 1.5E-42 349.4 12.6 254 819-1100 24-278 (283)
93 3qup_A Tyrosine-protein kinase 100.0 5.5E-38 1.9E-42 355.8 13.6 260 818-1100 22-296 (323)
94 1tki_A Titin; serine kinase, m 100.0 1.5E-37 5E-42 351.1 17.0 254 818-1098 4-260 (321)
95 3kex_A Receptor tyrosine-prote 100.0 1.2E-37 4E-42 353.2 15.9 257 819-1101 13-275 (325)
96 1ob3_A PFPK5, cell division co 100.0 1.4E-37 4.7E-42 346.3 15.7 271 819-1098 2-283 (288)
97 4eut_A Serine/threonine-protei 100.0 1.1E-37 3.6E-42 363.3 15.2 276 819-1100 9-307 (396)
98 3h4j_B AMPK kdaid, SNF1-like p 100.0 8.8E-38 3E-42 354.0 13.8 249 819-1098 9-261 (336)
99 4dc2_A Protein kinase C IOTA t 100.0 3.4E-37 1.1E-41 355.9 18.8 256 819-1098 52-321 (396)
100 1fot_A TPK1 delta, CAMP-depend 100.0 6.5E-37 2.2E-41 344.8 20.6 248 819-1098 6-261 (318)
101 1p4o_A Insulin-like growth fac 100.0 1.8E-38 6.1E-43 359.7 7.8 265 815-1102 21-299 (322)
102 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 7.2E-38 2.5E-42 370.8 13.3 262 819-1108 184-446 (452)
103 4fr4_A YANK1, serine/threonine 100.0 4.8E-37 1.6E-41 353.5 19.8 252 819-1097 15-273 (384)
104 3mdy_A Bone morphogenetic prot 100.0 1.4E-36 4.9E-41 346.3 23.5 270 815-1105 33-334 (337)
105 3txo_A PKC-L, NPKC-ETA, protei 100.0 1.5E-37 5E-42 355.0 15.2 252 818-1098 22-283 (353)
106 2bdw_A Hypothetical protein K1 100.0 3.4E-37 1.2E-41 353.9 18.1 256 817-1098 27-287 (362)
107 2w4o_A Calcium/calmodulin-depe 100.0 2.5E-37 8.6E-42 353.5 16.8 254 818-1099 52-309 (349)
108 3soa_A Calcium/calmodulin-depe 100.0 4.5E-37 1.5E-41 361.1 19.3 257 817-1098 9-270 (444)
109 4f0f_A Serine/threonine-protei 100.0 1E-36 3.6E-41 339.0 21.1 253 819-1100 19-287 (287)
110 4e5w_A Tyrosine-protein kinase 100.0 1.7E-37 5.7E-42 348.2 14.8 270 819-1100 21-300 (302)
111 3c0i_A Peripheral plasma membr 100.0 2.7E-37 9.3E-42 353.7 16.6 256 819-1097 24-288 (351)
112 3lzb_A Epidermal growth factor 100.0 1.7E-37 5.9E-42 351.8 14.8 257 819-1101 15-277 (327)
113 3og7_A AKAP9-BRAF fusion prote 100.0 1E-37 3.5E-42 347.5 12.7 261 819-1102 24-288 (289)
114 3dtc_A Mitogen-activated prote 100.0 1.3E-37 4.5E-42 343.2 13.4 251 819-1100 7-271 (271)
115 1mp8_A Focal adhesion kinase 1 100.0 1E-37 3.6E-42 345.9 12.5 255 819-1100 15-274 (281)
116 2xir_A Vascular endothelial gr 100.0 6.8E-38 2.3E-42 353.8 11.1 266 813-1100 21-308 (316)
117 2id5_A Lingo-1, leucine rich r 100.0 1.3E-36 4.4E-41 364.1 22.7 309 87-397 26-334 (477)
118 3o6n_A APL1; leucine-rich repe 100.0 1.1E-36 3.9E-41 354.5 21.5 351 48-421 3-353 (390)
119 1k9a_A Carboxyl-terminal SRC k 100.0 3.6E-37 1.2E-41 364.7 17.0 249 819-1100 193-443 (450)
120 2eva_A TAK1 kinase - TAB1 chim 100.0 2.6E-37 8.8E-42 347.3 15.0 253 819-1100 8-261 (307)
121 3uc3_A Serine/threonine-protei 100.0 1.7E-37 5.7E-42 356.6 13.6 255 818-1098 19-277 (361)
122 2yex_A Serine/threonine-protei 100.0 2.9E-37 9.8E-42 341.4 15.0 257 818-1098 6-264 (276)
123 2zv2_A Calcium/calmodulin-depe 100.0 1.8E-37 6.3E-42 347.2 13.6 251 819-1097 13-294 (298)
124 1csn_A Casein kinase-1; phosph 100.0 1.3E-36 4.6E-41 340.1 20.4 260 819-1100 10-281 (298)
125 2izr_A Casein kinase I isoform 100.0 8.4E-37 2.9E-41 347.0 19.0 259 819-1100 9-279 (330)
126 1rdq_E PKA C-alpha, CAMP-depen 100.0 1E-36 3.5E-41 347.8 19.7 248 819-1098 41-296 (350)
127 3dbq_A Dual specificity protei 100.0 2.8E-37 9.5E-42 352.8 14.9 255 819-1099 9-277 (343)
128 1opk_A P150, C-ABL, proto-onco 100.0 1.8E-37 6.1E-42 371.3 14.0 257 819-1102 220-478 (495)
129 1kob_A Twitchin; kinase, intra 100.0 7.8E-37 2.7E-41 353.0 18.8 254 819-1098 51-307 (387)
130 2i1m_A Macrophage colony-stimu 100.0 8.3E-38 2.9E-42 355.9 10.3 261 818-1100 45-324 (333)
131 4aw2_A Serine/threonine-protei 100.0 2.6E-37 9.1E-42 361.6 14.7 265 813-1099 68-342 (437)
132 3gxj_A TGF-beta receptor type- 100.0 3.9E-38 1.3E-42 353.5 7.2 272 818-1107 2-302 (303)
133 1xjd_A Protein kinase C, theta 100.0 3.6E-37 1.2E-41 350.4 15.1 253 817-1098 15-272 (345)
134 3a8x_A Protein kinase C IOTA t 100.0 8.7E-37 3E-41 347.9 18.3 256 819-1098 9-278 (345)
135 3g33_A Cell division protein k 100.0 6.6E-37 2.3E-41 344.4 17.1 274 817-1099 7-300 (308)
136 4fvq_A Tyrosine-protein kinase 100.0 2.9E-37 1E-41 343.8 14.0 255 819-1106 8-279 (289)
137 3kmu_A ILK, integrin-linked ki 100.0 3.7E-37 1.3E-41 339.4 14.7 252 819-1101 10-269 (271)
138 3v8s_A RHO-associated protein 100.0 2.6E-37 8.8E-42 359.0 14.0 260 816-1100 66-334 (410)
139 3a62_A Ribosomal protein S6 ki 100.0 9.8E-37 3.3E-41 345.6 18.4 251 819-1098 17-279 (327)
140 3mtl_A Cell division protein k 100.0 2.4E-37 8.1E-42 350.4 13.2 271 819-1099 2-285 (324)
141 3t9t_A Tyrosine-protein kinase 100.0 2.1E-37 7.3E-42 340.7 12.4 254 819-1100 8-262 (267)
142 2y94_A 5'-AMP-activated protei 100.0 1.3E-36 4.5E-41 359.3 20.0 249 819-1097 16-268 (476)
143 2i0e_A Protein kinase C-beta I 100.0 1.3E-36 4.5E-41 346.9 19.2 252 818-1098 19-279 (353)
144 3lxp_A Non-receptor tyrosine-p 100.0 3E-37 1E-41 348.7 13.7 268 821-1100 33-308 (318)
145 3p1a_A MYT1 kinase, membrane-a 100.0 5E-37 1.7E-41 345.6 15.2 248 819-1098 57-307 (311)
146 3is5_A Calcium-dependent prote 100.0 1.1E-36 3.7E-41 338.5 17.5 254 819-1097 22-280 (285)
147 2zmd_A Dual specificity protei 100.0 8.6E-37 2.9E-41 354.3 17.4 254 819-1098 56-323 (390)
148 3c1x_A Hepatocyte growth facto 100.0 1.8E-37 6.2E-42 357.3 11.5 256 820-1100 90-353 (373)
149 3op5_A Serine/threonine-protei 100.0 4E-37 1.4E-41 354.6 14.1 267 818-1100 34-327 (364)
150 3gni_B Strad alpha; kinase fol 100.0 9.6E-37 3.3E-41 354.9 17.2 206 818-1027 24-240 (389)
151 3ork_A Serine/threonine protei 100.0 2.2E-37 7.5E-42 348.7 11.3 256 819-1097 12-275 (311)
152 3oz6_A Mitogen-activated prote 100.0 7.3E-37 2.5E-41 355.7 16.0 273 817-1098 7-331 (388)
153 3f66_A Hepatocyte growth facto 100.0 4.7E-37 1.6E-41 343.8 13.9 264 819-1106 25-295 (298)
154 2id5_A Lingo-1, leucine rich r 100.0 2.1E-36 7.3E-41 362.2 20.4 318 101-421 17-334 (477)
155 3fdn_A Serine/threonine-protei 100.0 1.7E-36 5.8E-41 335.9 18.1 250 818-1098 8-260 (279)
156 2a2a_A Death-associated protei 100.0 2.6E-36 9E-41 341.5 20.0 255 818-1098 11-275 (321)
157 4agu_A Cyclin-dependent kinase 100.0 8.3E-37 2.8E-41 344.1 15.7 269 819-1098 3-287 (311)
158 1u59_A Tyrosine-protein kinase 100.0 4.6E-37 1.6E-41 341.9 13.2 256 819-1100 9-270 (287)
159 3lxl_A Tyrosine-protein kinase 100.0 3.2E-37 1.1E-41 350.1 12.0 271 819-1102 23-303 (327)
160 3brb_A Proto-oncogene tyrosine 100.0 3.8E-37 1.3E-41 347.2 12.5 263 816-1101 31-307 (313)
161 2v62_A Serine/threonine-protei 100.0 7.5E-37 2.6E-41 349.6 15.1 270 819-1105 37-331 (345)
162 2eue_A Carbon catabolite derep 100.0 1.3E-36 4.5E-41 336.0 16.6 249 819-1098 13-265 (275)
163 2x4f_A Myosin light chain kina 100.0 9.5E-37 3.2E-41 351.5 16.1 249 824-1098 94-345 (373)
164 2vd5_A DMPK protein; serine/th 100.0 5.4E-37 1.8E-41 356.5 14.1 263 814-1099 56-331 (412)
165 1mqb_A Ephrin type-A receptor 100.0 7.3E-37 2.5E-41 347.7 14.9 257 819-1100 44-307 (333)
166 3hko_A Calcium/calmodulin-depe 100.0 1.1E-36 3.8E-41 348.5 16.3 265 814-1098 21-333 (345)
167 3dls_A PAS domain-containing s 100.0 4.5E-37 1.5E-41 349.4 12.8 246 817-1098 22-277 (335)
168 2h8h_A Proto-oncogene tyrosine 100.0 2.3E-37 8E-42 373.7 11.1 262 819-1108 267-529 (535)
169 3e7e_A HBUB1, BUB1A, mitotic c 100.0 1.2E-36 4.2E-41 350.8 16.5 251 818-1100 64-337 (365)
170 2acx_A G protein-coupled recep 100.0 2E-36 6.7E-41 362.1 18.4 256 819-1098 184-447 (576)
171 3kn6_A Ribosomal protein S6 ki 100.0 1E-36 3.4E-41 345.1 15.1 252 824-1099 16-274 (325)
172 3f3z_A Calcium/calmodulin-depe 100.0 3.5E-36 1.2E-40 333.0 19.1 252 818-1097 8-263 (277)
173 3pls_A Macrophage-stimulating 100.0 5.7E-37 1.9E-41 343.1 12.8 258 820-1101 22-286 (298)
174 2yfx_A Tyrosine-protein kinase 100.0 3.6E-37 1.2E-41 349.7 11.2 259 819-1100 30-302 (327)
175 3eqc_A Dual specificity mitoge 100.0 3.3E-37 1.1E-41 354.9 11.0 199 819-1027 33-233 (360)
176 1qpc_A LCK kinase; alpha beta 100.0 5.1E-37 1.7E-41 340.1 12.1 257 818-1102 12-269 (279)
177 3cc6_A Protein tyrosine kinase 100.0 6E-37 2E-41 339.9 12.6 256 818-1100 11-271 (281)
178 1b6c_B TGF-B superfamily recep 100.0 4.6E-36 1.6E-40 342.9 20.3 272 814-1103 37-337 (342)
179 3kk8_A Calcium/calmodulin depe 100.0 3E-36 1E-40 334.7 18.1 255 818-1098 5-264 (284)
180 4ejn_A RAC-alpha serine/threon 100.0 1.3E-36 4.4E-41 360.0 15.9 252 819-1099 148-408 (446)
181 2h34_A Serine/threonine-protei 100.0 4.3E-36 1.5E-40 337.7 19.4 261 818-1103 33-297 (309)
182 2buj_A Serine/threonine-protei 100.0 1E-36 3.5E-41 344.3 14.2 266 819-1106 29-310 (317)
183 3ttj_A Mitogen-activated prote 100.0 1.4E-36 4.8E-41 360.0 15.9 268 818-1098 61-358 (464)
184 1nxk_A MAP kinase-activated pr 100.0 2.8E-36 9.7E-41 351.0 18.2 253 819-1099 61-325 (400)
185 3g2f_A Bone morphogenetic prot 100.0 3.1E-37 1.1E-41 351.7 9.7 269 819-1101 13-317 (336)
186 3llt_A Serine/threonine kinase 100.0 5E-36 1.7E-40 345.2 19.6 200 816-1027 32-262 (360)
187 3cok_A Serine/threonine-protei 100.0 3E-36 1E-40 333.6 17.1 252 819-1098 11-265 (278)
188 2ozo_A Tyrosine-protein kinase 100.0 1.5E-36 5.1E-41 371.9 15.9 249 826-1100 343-596 (613)
189 3kfa_A Tyrosine-protein kinase 100.0 8.5E-37 2.9E-41 340.0 12.5 256 818-1100 12-269 (288)
190 3bhy_A Death-associated protei 100.0 5.5E-36 1.9E-40 332.4 19.0 253 819-1097 5-267 (283)
191 3i6u_A CDS1, serine/threonine- 100.0 2.4E-36 8.3E-41 354.0 16.5 258 816-1099 132-403 (419)
192 1u5q_A Serine/threonine protei 100.0 1E-36 3.4E-41 348.0 12.7 251 819-1100 54-310 (348)
193 3oja_B Anopheles plasmodium-re 100.0 6.7E-36 2.3E-40 367.3 20.9 351 43-420 4-358 (597)
194 1fvr_A Tyrosine-protein kinase 100.0 1.3E-36 4.4E-41 345.1 13.3 256 819-1100 25-298 (327)
195 2wqm_A Serine/threonine-protei 100.0 5.1E-36 1.7E-40 337.5 17.8 260 819-1100 32-295 (310)
196 2ac3_A MAP kinase-interacting 100.0 1.2E-36 4.2E-41 343.5 12.7 262 819-1099 12-299 (316)
197 2r5t_A Serine/threonine-protei 100.0 3.6E-36 1.2E-40 345.7 16.3 250 819-1097 38-295 (373)
198 3c4z_A Rhodopsin kinase; Ser/T 100.0 7.4E-36 2.5E-40 356.6 19.5 257 819-1097 185-450 (543)
199 1cm8_A Phosphorylated MAP kina 100.0 3.7E-36 1.3E-40 346.2 15.9 266 819-1098 25-310 (367)
200 1xbb_A Tyrosine-protein kinase 100.0 2.4E-36 8.3E-41 336.8 13.9 255 819-1100 16-277 (291)
201 3a7i_A MST3 kinase, serine/thr 100.0 1.1E-35 3.7E-40 333.7 19.2 251 819-1098 22-273 (303)
202 1vzo_A Ribosomal protein S6 ki 100.0 2.3E-36 7.7E-41 346.7 13.9 258 819-1100 54-326 (355)
203 3nsz_A CK II alpha, casein kin 100.0 6.4E-36 2.2E-40 339.9 17.6 265 819-1099 36-323 (330)
204 2vgo_A Serine/threonine-protei 100.0 1E-35 3.5E-40 330.5 18.7 248 819-1097 14-264 (284)
205 2qr7_A Ribosomal protein S6 ki 100.0 2.4E-36 8.1E-41 343.9 13.8 255 817-1098 20-280 (342)
206 4hgt_A Casein kinase I isoform 100.0 8.4E-36 2.9E-40 333.3 17.9 261 816-1100 6-278 (296)
207 3n9x_A Phosphotransferase; mal 100.0 5.5E-36 1.9E-40 352.7 17.1 201 818-1025 25-253 (432)
208 2h6d_A 5'-AMP-activated protei 100.0 9.6E-36 3.3E-40 329.2 18.1 250 819-1098 11-264 (276)
209 1t4h_A Serine/threonine-protei 100.0 5.4E-36 1.8E-40 333.8 16.1 250 820-1098 27-285 (290)
210 2clq_A Mitogen-activated prote 100.0 1.7E-35 5.8E-40 330.6 20.0 256 820-1099 23-282 (295)
211 2jii_A Serine/threonine-protei 100.0 1.2E-36 4.2E-41 348.9 10.7 261 819-1100 42-334 (352)
212 2rku_A Serine/threonine-protei 100.0 1.3E-35 4.5E-40 331.4 18.7 251 819-1098 15-268 (294)
213 3pg1_A Mitogen-activated prote 100.0 6.1E-36 2.1E-40 344.7 16.3 279 810-1098 13-319 (362)
214 3uzp_A CKI-delta, CKID, casein 100.0 1.2E-35 4.2E-40 331.9 18.1 259 818-1100 8-278 (296)
215 2a19_B Interferon-induced, dou 100.0 2.7E-36 9.4E-41 335.0 12.6 249 817-1102 9-274 (284)
216 3rp9_A Mitogen-activated prote 100.0 5.3E-36 1.8E-40 356.4 15.9 195 819-1020 53-280 (458)
217 3qyz_A Mitogen-activated prote 100.0 7.3E-36 2.5E-40 344.1 16.5 272 818-1098 26-316 (364)
218 2w5a_A Serine/threonine-protei 100.0 9.4E-37 3.2E-41 337.9 8.5 259 818-1101 5-273 (279)
219 1x8b_A WEE1HU, WEE1-like prote 100.0 3.3E-36 1.1E-40 335.1 12.9 251 817-1099 9-283 (289)
220 2jam_A Calcium/calmodulin-depe 100.0 1.2E-35 3.9E-40 333.6 17.3 253 818-1098 8-264 (304)
221 3byv_A Rhoptry kinase; malaria 100.0 6.3E-37 2.2E-41 354.6 7.3 243 819-1096 73-360 (377)
222 2vwi_A Serine/threonine-protei 100.0 1.7E-36 5.8E-41 340.1 10.5 267 818-1098 14-290 (303)
223 4e7w_A Glycogen synthase kinas 100.0 4.3E-36 1.5E-40 349.2 14.0 264 819-1098 40-324 (394)
224 2owb_A Serine/threonine-protei 100.0 9.7E-36 3.3E-40 338.9 16.7 251 819-1098 41-294 (335)
225 2y7j_A Phosphorylase B kinase 100.0 2.8E-35 9.7E-40 338.7 20.6 259 814-1098 89-362 (365)
226 4aaa_A Cyclin-dependent kinase 100.0 4.1E-36 1.4E-40 341.5 13.3 266 819-1097 25-308 (331)
227 3fme_A Dual specificity mitoge 100.0 3.6E-36 1.2E-40 335.2 12.6 255 818-1097 6-268 (290)
228 3mwu_A Calmodulin-domain prote 100.0 2E-35 6.9E-40 353.8 19.6 255 817-1098 20-279 (486)
229 2w1i_A JAK2; chromosomal rearr 100.0 2.9E-36 9.9E-41 342.0 11.6 270 819-1100 41-320 (326)
230 3mi9_A Cell division protein k 100.0 1.3E-35 4.5E-40 340.3 17.1 275 819-1101 17-317 (351)
231 3gbz_A Kinase, CMGC CDK; ssgci 100.0 1E-35 3.4E-40 337.8 15.9 269 818-1100 33-323 (329)
232 1byg_A CSK, protein (C-termina 100.0 2.2E-36 7.5E-41 334.8 10.0 249 819-1100 21-271 (278)
233 3ll6_A Cyclin G-associated kin 100.0 4.1E-36 1.4E-40 342.5 12.5 254 819-1100 28-306 (337)
234 3lij_A Calcium/calmodulin depe 100.0 2.5E-35 8.6E-40 353.6 19.9 253 818-1097 36-293 (494)
235 3lm5_A Serine/threonine-protei 100.0 1.2E-35 4.1E-40 336.8 16.2 268 808-1099 17-291 (327)
236 2pml_X PFPK7, Ser/Thr protein 100.0 5.3E-36 1.8E-40 343.3 13.3 266 819-1098 31-325 (348)
237 4fl3_A Tyrosine-protein kinase 100.0 5.7E-36 1.9E-40 367.5 14.4 249 825-1100 375-629 (635)
238 3eb0_A Putative uncharacterize 100.0 1E-35 3.6E-40 345.1 15.5 265 816-1097 4-323 (383)
239 2xrw_A Mitogen-activated prote 100.0 1.9E-35 6.5E-40 341.2 17.5 267 819-1098 25-321 (371)
240 3nyv_A Calmodulin-domain prote 100.0 1.2E-35 4.1E-40 355.9 16.4 254 818-1098 25-284 (484)
241 2r3i_A Cell division protein k 100.0 2.6E-35 8.8E-40 329.9 18.0 273 819-1099 3-287 (299)
242 3oja_B Anopheles plasmodium-re 100.0 2.8E-35 9.5E-40 361.8 19.9 336 358-736 50-385 (597)
243 2wtk_C Serine/threonine-protei 100.0 7.8E-35 2.7E-39 327.0 21.4 255 818-1098 4-266 (305)
244 1ua2_A CAK, cell division prot 100.0 3.5E-35 1.2E-39 335.8 18.8 275 816-1099 7-295 (346)
245 3sv0_A Casein kinase I-like; t 100.0 3E-35 1E-39 348.4 18.8 260 819-1100 7-276 (483)
246 3q5i_A Protein kinase; CDPK, m 100.0 3.6E-35 1.2E-39 353.1 19.8 254 818-1098 35-304 (504)
247 2ycf_A Serine/threonine-protei 100.0 1.6E-35 5.4E-40 335.3 15.4 255 817-1097 8-276 (322)
248 3kvw_A DYRK2, dual specificity 100.0 2.3E-35 7.8E-40 346.7 17.2 197 819-1027 97-302 (429)
249 3an0_A Dual specificity mitoge 100.0 6E-36 2E-40 341.6 11.8 254 819-1097 51-312 (340)
250 2b9h_A MAP kinase FUS3, mitoge 100.0 1.7E-35 6E-40 339.7 15.6 272 818-1099 10-309 (353)
251 1j1b_A Glycogen synthase kinas 100.0 1.1E-35 3.9E-40 348.5 14.3 264 819-1098 54-339 (420)
252 3com_A Serine/threonine-protei 100.0 6.1E-35 2.1E-39 329.3 19.7 254 817-1098 27-281 (314)
253 3e3p_A Protein kinase, putativ 100.0 3.3E-35 1.1E-39 338.4 17.2 279 812-1098 16-317 (360)
254 3o6n_A APL1; leucine-rich repe 100.0 7.2E-35 2.5E-39 339.3 20.2 337 357-736 43-379 (390)
255 2fst_X Mitogen-activated prote 100.0 7.1E-36 2.4E-40 343.4 11.5 267 818-1098 28-314 (367)
256 3pfq_A PKC-B, PKC-beta, protei 100.0 4.3E-35 1.5E-39 362.2 19.0 252 818-1098 340-600 (674)
257 3rgf_A Cyclin-dependent kinase 100.0 2.9E-35 9.9E-40 344.1 15.8 278 819-1103 20-341 (405)
258 3q60_A ROP5B; pseudokinase, tr 100.0 5.7E-36 1.9E-40 345.9 9.6 255 819-1097 62-354 (371)
259 1u46_A ACK-1, activated CDC42 100.0 5.1E-36 1.7E-40 334.2 8.9 258 819-1101 18-283 (291)
260 1blx_A Cyclin-dependent kinase 100.0 3.6E-35 1.2E-39 333.1 15.7 273 817-1098 9-299 (326)
261 3cek_A Dual specificity protei 100.0 3.1E-35 1E-39 331.6 14.4 255 818-1098 27-295 (313)
262 2j7t_A Serine/threonine-protei 100.0 2.8E-35 9.6E-40 330.1 14.0 255 818-1098 18-278 (302)
263 2x7f_A TRAF2 and NCK-interacti 100.0 8.3E-36 2.8E-40 338.4 9.3 257 815-1098 20-289 (326)
264 1wak_A Serine/threonine-protei 100.0 7.6E-35 2.6E-39 340.1 16.7 268 819-1098 37-394 (397)
265 2j0j_A Focal adhesion kinase 1 100.0 2.4E-35 8.3E-40 363.3 13.1 256 818-1100 389-649 (656)
266 1phk_A Phosphorylase kinase; g 100.0 1E-34 3.4E-39 324.9 16.9 255 818-1098 16-286 (298)
267 1zy4_A Serine/threonine-protei 100.0 6.1E-35 2.1E-39 327.3 15.1 257 817-1099 4-287 (303)
268 4exu_A Mitogen-activated prote 100.0 7.2E-35 2.5E-39 336.4 15.9 265 819-1098 42-326 (371)
269 1z57_A Dual specificity protei 100.0 1.4E-34 4.8E-39 329.9 17.6 265 819-1097 14-330 (339)
270 3aln_A Dual specificity mitoge 100.0 3.4E-35 1.2E-39 333.4 12.2 257 819-1097 22-287 (327)
271 2wei_A Calmodulin-domain prote 100.0 2.2E-34 7.4E-39 320.3 18.0 255 816-1097 19-278 (287)
272 2y4i_B KSR2, HKSR2, kinase sup 100.0 1.7E-35 5.7E-40 334.7 8.3 258 818-1102 32-302 (319)
273 2i6l_A Mitogen-activated prote 100.0 8.5E-35 2.9E-39 328.9 13.9 270 819-1098 11-308 (320)
274 3fhr_A MAP kinase-activated pr 100.0 9.2E-35 3.1E-39 330.7 13.9 255 818-1098 27-290 (336)
275 2vx3_A Dual specificity tyrosi 100.0 4.3E-34 1.5E-38 331.4 19.3 201 817-1027 52-261 (382)
276 4fmz_A Internalin; leucine ric 100.0 2.1E-33 7.1E-38 321.5 24.7 307 91-444 40-346 (347)
277 4fcg_A Uncharacterized protein 100.0 1.1E-34 3.7E-39 328.4 13.7 283 22-324 21-314 (328)
278 3a99_A Proto-oncogene serine/t 100.0 3.8E-35 1.3E-39 331.6 9.6 244 818-1098 42-296 (320)
279 2rio_A Serine/threonine-protei 100.0 8.1E-35 2.8E-39 342.7 12.4 254 820-1097 16-297 (434)
280 2iwi_A Serine/threonine-protei 100.0 8.6E-35 3E-39 327.7 11.1 248 815-1099 27-287 (312)
281 3qa8_A MGC80376 protein; kinas 100.0 3.5E-35 1.2E-39 354.1 8.1 266 819-1094 14-296 (676)
282 3coi_A Mitogen-activated prote 100.0 2.6E-34 9E-39 329.7 14.9 265 819-1098 24-308 (353)
283 4fmz_A Internalin; leucine ric 100.0 4.2E-33 1.4E-37 319.0 24.6 307 115-468 40-346 (347)
284 1q8y_A SR protein kinase; tran 100.0 6.8E-34 2.3E-38 329.1 17.6 269 819-1099 19-337 (373)
285 2dyl_A Dual specificity mitoge 100.0 3.6E-34 1.2E-38 323.6 14.3 253 819-1097 25-285 (318)
286 2eu9_A Dual specificity protei 100.0 1.1E-33 3.8E-38 324.8 18.4 266 819-1098 19-336 (355)
287 3p23_A Serine/threonine-protei 100.0 3.1E-34 1.1E-38 336.6 11.6 251 819-1097 24-285 (432)
288 1ogq_A PGIP-2, polygalacturona 100.0 4.4E-33 1.5E-37 313.2 15.4 251 312-564 51-306 (313)
289 2ft3_A Biglycan; proteoglycan, 100.0 5.9E-32 2E-36 307.3 24.0 246 95-372 54-307 (332)
290 2ft3_A Biglycan; proteoglycan, 100.0 5.2E-32 1.8E-36 307.7 23.2 288 312-633 34-331 (332)
291 2pzi_A Probable serine/threoni 100.0 3E-33 1E-37 348.4 11.7 237 819-1098 80-324 (681)
292 1xku_A Decorin; proteoglycan, 100.0 1.9E-31 6.6E-36 302.8 23.7 270 57-372 29-306 (330)
293 1z7x_W Ribonuclease inhibitor; 100.0 8.2E-36 2.8E-40 355.7 -13.4 352 95-446 3-413 (461)
294 1xku_A Decorin; proteoglycan, 100.0 7.4E-31 2.5E-35 298.0 26.3 289 264-585 32-330 (330)
295 3uqc_A Probable conserved tran 100.0 6.4E-32 2.2E-36 299.4 16.8 230 819-1100 31-263 (286)
296 3m2w_A MAP kinase-activated pr 100.0 5.3E-32 1.8E-36 302.8 15.8 233 819-1098 17-259 (299)
297 1z7x_W Ribonuclease inhibitor; 100.0 4.2E-35 1.4E-39 349.5 -11.0 351 118-468 2-411 (461)
298 3dzo_A Rhoptry kinase domain; 100.0 9.8E-33 3.3E-37 322.8 8.2 243 819-1096 78-364 (413)
299 2vuw_A Serine/threonine-protei 100.0 1.2E-32 4.2E-37 313.5 5.0 246 818-1096 19-332 (336)
300 2z80_A TOLL-like receptor 2, v 100.0 3.6E-30 1.2E-34 295.2 13.6 285 56-376 27-318 (353)
301 2z66_A Variable lymphocyte rec 100.0 3E-30 1E-34 289.7 12.3 254 56-349 4-262 (306)
302 3ogk_B Coronatine-insensitive 100.0 3.6E-31 1.2E-35 326.1 -0.5 430 110-584 64-548 (592)
303 3ogk_B Coronatine-insensitive 100.0 1.8E-31 6.1E-36 328.8 -5.2 450 58-559 41-547 (592)
304 2z66_A Variable lymphocyte rec 100.0 9.1E-29 3.1E-33 277.6 16.7 280 98-405 10-296 (306)
305 2z80_A TOLL-like receptor 2, v 100.0 4.1E-29 1.4E-33 286.4 14.2 277 117-421 29-315 (353)
306 1wwl_A Monocyte differentiatio 100.0 1.4E-29 4.9E-34 284.6 8.0 249 115-373 39-310 (312)
307 4fcg_A Uncharacterized protein 100.0 5.5E-28 1.9E-32 273.3 17.8 234 335-611 81-314 (328)
308 1ozn_A Reticulon 4 receptor; N 99.9 5.4E-28 1.9E-32 268.2 15.1 255 122-403 14-268 (285)
309 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-27 7.6E-32 263.3 19.8 235 407-642 32-268 (285)
310 3g06_A SSPH2 (leucine-rich rep 99.9 5.8E-28 2E-32 293.6 16.2 293 46-407 10-308 (622)
311 3o53_A Protein LRIM1, AGAP0063 99.9 5.9E-29 2E-33 280.3 6.7 265 362-640 13-281 (317)
312 1wwl_A Monocyte differentiatio 99.9 8.5E-29 2.9E-33 278.3 6.8 249 138-396 38-309 (312)
313 3zyi_A Leucine-rich repeat-con 99.9 4.9E-27 1.7E-31 278.5 20.0 249 97-373 56-304 (452)
314 3o53_A Protein LRIM1, AGAP0063 99.9 9.1E-29 3.1E-33 278.7 4.6 236 310-558 33-270 (317)
315 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-26 6.4E-31 280.3 25.2 263 288-617 41-303 (622)
316 3zyj_A Leucine-rich repeat-con 99.9 1.2E-26 4E-31 274.3 22.8 249 313-612 45-293 (440)
317 3zyi_A Leucine-rich repeat-con 99.9 4.6E-27 1.6E-31 278.8 19.3 234 87-348 69-303 (452)
318 3zyj_A Leucine-rich repeat-con 99.9 9.2E-27 3.1E-31 275.2 20.7 249 97-373 45-293 (440)
319 3oja_A Leucine-rich immune mol 99.9 6.8E-27 2.3E-31 278.8 11.8 233 384-630 35-270 (487)
320 3oja_A Leucine-rich immune mol 99.9 7.8E-27 2.7E-31 278.3 7.6 237 118-391 33-270 (487)
321 2o6q_A Variable lymphocyte rec 99.9 1.1E-25 3.8E-30 247.4 15.9 216 57-300 3-218 (270)
322 2p1m_B Transport inhibitor res 99.9 9.7E-29 3.3E-33 304.5 -12.2 132 501-633 396-542 (594)
323 4azs_A Methyltransferase WBDD; 99.9 1.8E-26 6.1E-31 278.8 6.0 185 827-1023 242-437 (569)
324 2p1m_B Transport inhibitor res 99.9 1.4E-28 4.7E-33 303.1 -13.9 283 334-636 210-520 (594)
325 2z62_A TOLL-like receptor 4, v 99.9 1.6E-24 5.5E-29 239.0 18.3 211 95-326 28-239 (276)
326 2z62_A TOLL-like receptor 4, v 99.9 4.1E-24 1.4E-28 235.7 19.4 207 408-615 29-241 (276)
327 3rfs_A Internalin B, repeat mo 99.9 1.1E-24 3.9E-29 239.5 12.3 230 382-647 18-247 (272)
328 3goz_A Leucine-rich repeat-con 99.9 9.4E-26 3.2E-30 259.2 3.3 260 316-618 3-304 (362)
329 3rfs_A Internalin B, repeat mo 99.9 2.9E-24 9.8E-29 236.3 14.6 230 358-623 18-247 (272)
330 3goz_A Leucine-rich repeat-con 99.9 2.5E-25 8.7E-30 255.5 1.8 262 268-548 3-306 (362)
331 2o6q_A Variable lymphocyte rec 99.9 6.9E-23 2.3E-27 225.0 19.4 202 170-374 19-220 (270)
332 2ast_B S-phase kinase-associat 99.9 2.1E-25 7.2E-30 253.8 -2.2 269 57-357 35-315 (336)
333 1p9a_G Platelet glycoprotein I 99.9 6.3E-23 2.2E-27 227.4 17.5 202 404-635 7-208 (290)
334 4glp_A Monocyte differentiatio 99.9 8.5E-24 2.9E-28 237.4 10.2 202 501-708 90-308 (310)
335 3m19_A Variable lymphocyte rec 99.9 3.3E-23 1.1E-27 224.9 14.4 191 57-253 3-193 (251)
336 1p9a_G Platelet glycoprotein I 99.9 1.2E-22 4E-27 225.2 17.9 200 189-395 8-207 (290)
337 3en9_A Glycoprotease, O-sialog 99.9 3.1E-24 1.1E-28 257.8 5.6 186 822-1024 339-538 (540)
338 2xwt_C Thyrotropin receptor; s 99.9 3.6E-23 1.2E-27 222.9 11.9 196 96-321 32-236 (239)
339 2ca6_A RAN GTPase-activating p 99.9 7.3E-25 2.5E-29 254.3 -2.8 192 188-399 91-319 (386)
340 2ca6_A RAN GTPase-activating p 99.9 8.4E-25 2.9E-29 253.8 -3.5 272 159-441 24-340 (386)
341 4glp_A Monocyte differentiatio 99.9 6.6E-23 2.3E-27 230.1 11.8 224 360-612 65-308 (310)
342 2ast_B S-phase kinase-associat 99.9 7.5E-24 2.6E-28 240.9 3.0 253 121-381 49-315 (336)
343 2xwt_C Thyrotropin receptor; s 99.9 4.1E-22 1.4E-26 214.6 13.1 198 119-346 31-237 (239)
344 1h6u_A Internalin H; cell adhe 99.9 3.1E-22 1.1E-26 224.0 12.5 192 405-611 39-230 (308)
345 3m19_A Variable lymphocyte rec 99.9 1E-21 3.5E-26 213.1 15.8 158 456-613 36-194 (251)
346 1h6u_A Internalin H; cell adhe 99.9 2E-21 6.8E-26 217.5 16.2 216 336-593 20-235 (308)
347 2o6s_A Variable lymphocyte rec 99.9 5.1E-21 1.7E-25 201.3 16.0 187 56-288 4-190 (208)
348 3cvr_A Invasion plasmid antige 99.8 2.5E-21 8.4E-26 232.4 14.0 187 408-645 60-253 (571)
349 3cvr_A Invasion plasmid antige 99.8 1E-21 3.6E-26 235.6 10.2 189 432-672 60-255 (571)
350 4ay9_X Follicle-stimulating ho 99.8 5.5E-21 1.9E-25 218.2 15.6 220 360-608 31-256 (350)
351 4ay9_X Follicle-stimulating ho 99.8 8.9E-21 3E-25 216.5 15.7 240 98-369 12-256 (350)
352 2o6s_A Variable lymphocyte rec 99.8 1.9E-20 6.4E-25 196.9 14.3 156 498-665 48-203 (208)
353 1zar_A RIO2 kinase; serine kin 99.8 4.2E-21 1.4E-25 211.3 8.6 151 814-997 85-252 (282)
354 4b8c_D Glucose-repressible alc 99.8 9.2E-21 3.1E-25 236.2 5.8 260 24-324 128-404 (727)
355 4b8c_D Glucose-repressible alc 99.8 4.1E-20 1.4E-24 230.3 10.0 187 432-642 174-361 (727)
356 1dce_A Protein (RAB geranylger 99.8 1.2E-21 4.2E-26 236.5 -4.6 204 116-342 346-567 (567)
357 1m9s_A Internalin B; cell inva 99.8 1.3E-19 4.6E-24 219.9 11.1 188 385-587 23-210 (605)
358 1dce_A Protein (RAB geranylger 99.8 7.2E-21 2.5E-25 229.8 -2.1 195 499-701 346-567 (567)
359 1h6t_A Internalin B; cell adhe 99.8 3.6E-19 1.2E-23 197.3 11.5 171 404-587 43-213 (291)
360 3e6j_A Variable lymphocyte rec 99.8 1.5E-18 5.3E-23 185.0 15.1 158 56-229 16-173 (229)
361 1m9s_A Internalin B; cell inva 99.8 6.5E-19 2.2E-23 213.9 12.4 170 190-373 42-211 (605)
362 1h6t_A Internalin B; cell adhe 99.8 5.5E-19 1.9E-23 195.8 10.7 170 189-372 44-213 (291)
363 2v9t_B SLIT homolog 2 protein 99.8 3.3E-18 1.1E-22 181.2 14.4 158 56-228 8-165 (220)
364 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-18 7.1E-23 182.7 12.2 117 498-614 53-169 (220)
365 2v70_A SLIT-2, SLIT homolog 2 99.7 4.5E-18 1.6E-22 180.1 12.9 150 77-229 17-167 (220)
366 2xot_A Amphoterin-induced prot 99.7 2E-18 6.7E-23 197.8 10.8 175 76-253 23-203 (361)
367 1xeu_A Internalin C; cellular 99.7 2.4E-18 8.3E-23 187.5 10.9 171 381-589 17-187 (263)
368 2v9t_B SLIT homolog 2 protein 99.7 5.2E-18 1.8E-22 179.6 12.8 153 98-253 14-166 (220)
369 2xot_A Amphoterin-induced prot 99.7 4.6E-18 1.6E-22 194.8 12.9 177 98-277 21-203 (361)
370 3e6j_A Variable lymphocyte rec 99.7 2.4E-17 8.2E-22 175.7 14.5 153 98-254 22-174 (229)
371 1xeu_A Internalin C; cellular 99.7 3.5E-18 1.2E-22 186.2 7.3 170 118-302 18-187 (263)
372 4ezg_A Putative uncharacterize 99.7 7.5E-18 2.6E-22 175.3 9.3 153 92-252 41-194 (197)
373 1w8a_A SLIT protein; signaling 99.7 2E-17 6.8E-22 171.2 10.2 132 482-615 11-143 (192)
374 4ezg_A Putative uncharacterize 99.7 6.7E-17 2.3E-21 168.0 13.7 154 284-444 41-194 (197)
375 1w8a_A SLIT protein; signaling 99.7 8.4E-17 2.9E-21 166.4 13.4 132 505-639 11-143 (192)
376 3sb4_A Hypothetical leucine ri 99.7 7.4E-18 2.5E-22 190.5 3.0 219 190-412 100-326 (329)
377 1zth_A RIO1 serine protein kin 99.7 7.3E-17 2.5E-21 175.2 9.2 138 821-972 49-219 (258)
378 3sb4_A Hypothetical leucine ri 99.6 2.7E-16 9.3E-21 177.6 11.4 280 190-482 24-324 (329)
379 2ell_A Acidic leucine-rich nuc 99.6 2.3E-16 8E-21 159.3 8.2 137 502-641 24-165 (168)
380 2ell_A Acidic leucine-rich nuc 99.6 7.9E-16 2.7E-20 155.5 9.3 108 502-611 49-160 (168)
381 2o6r_A Variable lymphocyte rec 99.6 4.6E-15 1.6E-19 151.2 12.3 134 56-204 4-137 (177)
382 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 4.9E-20 150.2 7.3 127 95-247 17-148 (149)
383 2wfh_A SLIT homolog 2 protein 99.6 4.1E-15 1.4E-19 153.6 9.6 126 483-611 14-139 (193)
384 2je0_A Acidic leucine-rich nuc 99.6 6.7E-15 2.3E-19 145.3 10.1 127 311-439 17-148 (149)
385 2o6r_A Variable lymphocyte rec 99.6 9.6E-15 3.3E-19 148.8 11.3 114 502-615 28-141 (177)
386 2wfh_A SLIT homolog 2 protein 99.6 9E-15 3.1E-19 151.1 11.0 128 505-636 13-140 (193)
387 1ds9_A Outer arm dynein; leuci 99.6 1.6E-16 5.4E-21 165.4 -2.6 153 547-707 15-185 (198)
388 1ds9_A Outer arm dynein; leuci 99.5 1.1E-16 3.7E-21 166.6 -4.3 132 545-685 43-186 (198)
389 4fdw_A Leucine rich hypothetic 99.5 5.7E-14 2E-18 162.0 17.8 261 95-368 113-379 (401)
390 4fdw_A Leucine rich hypothetic 99.5 1E-13 3.4E-18 160.0 18.2 247 90-348 131-383 (401)
391 4gyi_A RIO2 kinase; protein ki 99.5 3.3E-15 1.1E-19 167.8 4.1 139 819-973 95-266 (397)
392 1a9n_A U2A', U2A'; complex (nu 99.5 8.3E-15 2.8E-19 149.1 5.2 131 498-634 15-152 (176)
393 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-14 6E-19 146.7 6.3 105 503-611 43-153 (176)
394 4fs7_A Uncharacterized protein 99.5 1.5E-12 5.1E-17 150.8 22.8 314 110-440 62-375 (394)
395 4fs7_A Uncharacterized protein 99.4 8.9E-13 3E-17 152.7 17.9 335 226-602 58-392 (394)
396 2r9u_A Variable lymphocyte rec 99.4 5.1E-13 1.7E-17 135.3 11.4 104 505-611 15-118 (174)
397 3g39_A Variable lymphocyte rec 99.4 6E-13 2E-17 134.3 11.3 107 504-613 11-117 (170)
398 3g39_A Variable lymphocyte rec 99.3 1.5E-12 5.2E-17 131.3 9.7 104 484-589 14-117 (170)
399 2r9u_A Variable lymphocyte rec 99.3 1.4E-12 4.9E-17 132.0 9.1 92 502-594 33-124 (174)
400 3un9_A NLR family member X1; l 99.2 1.1E-13 3.7E-18 158.1 -7.3 134 119-252 72-224 (372)
401 3un9_A NLR family member X1; l 99.2 1.8E-13 6.2E-18 156.3 -5.6 141 311-451 101-259 (372)
402 2ifg_A High affinity nerve gro 99.2 1.4E-11 4.9E-16 140.0 9.7 105 506-613 12-118 (347)
403 4gt6_A Cell surface protein; l 99.2 5E-10 1.7E-14 129.5 19.9 110 305-418 259-368 (394)
404 4gt6_A Cell surface protein; l 99.1 7.2E-10 2.5E-14 128.2 18.6 328 185-538 57-390 (394)
405 2ifg_A High affinity nerve gro 99.1 4.2E-11 1.4E-15 136.1 7.5 103 484-588 13-117 (347)
406 3tm0_A Aminoglycoside 3'-phosp 99.0 4E-10 1.4E-14 122.5 9.6 145 816-970 11-212 (263)
407 1nd4_A Aminoglycoside 3'-phosp 98.9 1.7E-09 6E-14 117.2 8.3 136 820-970 21-213 (264)
408 2ra8_A Uncharacterized protein 98.8 2.9E-10 1E-14 128.5 -0.0 161 137-322 166-341 (362)
409 3rw6_A Nuclear RNA export fact 98.8 2.5E-11 8.6E-16 130.0 -9.7 152 26-180 33-209 (267)
410 2ra8_A Uncharacterized protein 98.8 1.4E-09 4.8E-14 122.9 3.5 84 357-442 250-341 (362)
411 3dxp_A Putative acyl-COA dehyd 98.8 6.5E-09 2.2E-13 118.5 8.9 142 824-971 43-248 (359)
412 4h09_A Hypothetical leucine ri 98.8 1.6E-07 5.4E-12 107.8 18.8 313 91-429 42-354 (379)
413 4h09_A Hypothetical leucine ri 98.7 2.5E-07 8.7E-12 106.1 19.7 107 379-488 236-342 (379)
414 3sg8_A APH(2'')-ID; antibiotic 98.5 1.7E-08 5.9E-13 112.0 2.1 187 824-1024 25-287 (304)
415 3rw6_A Nuclear RNA export fact 98.4 5.6E-08 1.9E-12 104.0 0.6 67 547-615 167-237 (267)
416 1io0_A Tropomodulin; LRR prote 98.3 1.3E-07 4.3E-12 96.4 1.3 15 358-372 64-78 (185)
417 1io0_A Tropomodulin; LRR prote 98.3 1.2E-07 4.1E-12 96.6 0.5 116 353-468 30-164 (185)
418 3r70_A Aminoglycoside phosphot 98.3 2.4E-06 8.2E-11 95.3 10.9 136 820-971 38-237 (320)
419 3d1u_A Putative fructosamine-3 98.1 1.1E-05 3.8E-10 88.1 11.5 141 823-970 19-215 (288)
420 3tdw_A Gentamicin resistance p 98.0 2E-05 7E-10 87.0 10.5 136 824-971 24-224 (306)
421 4gkh_A Aminoglycoside 3'-phosp 97.9 2.4E-05 8.4E-10 84.8 10.7 134 826-970 31-222 (272)
422 3ovc_A Hygromycin-B 4-O-kinase 97.7 5E-05 1.7E-09 86.0 9.2 143 823-972 45-244 (362)
423 3ats_A Putative uncharacterize 97.7 5.5E-05 1.9E-09 85.6 7.9 80 825-904 26-121 (357)
424 3e4g_A ATP synthase subunit S, 97.7 2.3E-05 7.8E-10 77.6 4.1 84 335-418 61-150 (176)
425 3e4g_A ATP synthase subunit S, 97.5 2.3E-05 7.9E-10 77.6 1.9 34 216-249 115-149 (176)
426 2q83_A YTAA protein; 2635576, 97.5 0.00023 7.9E-09 79.9 9.8 140 825-970 38-251 (346)
427 2olc_A MTR kinase, methylthior 97.4 0.00034 1.2E-08 80.3 10.5 76 824-901 35-120 (397)
428 3f7w_A Putative fructosamine-3 97.2 0.0011 3.7E-08 72.3 10.4 78 820-902 16-96 (288)
429 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00011 3.7E-09 74.2 1.3 63 405-467 96-169 (197)
430 3jr1_A Putative fructosamine-3 97.0 0.0052 1.8E-07 67.4 13.8 138 824-967 41-232 (312)
431 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00014 4.8E-09 73.4 1.0 116 309-444 39-170 (197)
432 2pyw_A Uncharacterized protein 96.6 0.006 2.1E-07 70.4 10.9 80 940-1021 231-313 (420)
433 3dxq_A Choline/ethanolamine ki 96.5 0.0053 1.8E-07 67.3 9.2 72 823-903 22-95 (301)
434 2ppq_A HSK, HK, homoserine kin 96.5 0.0071 2.4E-07 66.9 10.0 158 809-970 7-216 (322)
435 3csv_A Aminoglycoside phosphot 96.4 0.0049 1.7E-07 68.6 8.4 141 825-971 24-217 (333)
436 1zyl_A Hypothetical protein YI 96.4 0.021 7.1E-07 63.3 13.2 141 825-970 32-222 (328)
437 3rfe_A Platelet glycoprotein I 96.0 0.0067 2.3E-07 57.0 5.3 56 554-611 12-68 (130)
438 3rfe_A Platelet glycoprotein I 96.0 0.0088 3E-07 56.2 6.0 38 119-156 31-68 (130)
439 1nw1_A Choline kinase (49.2 KD 95.7 0.011 3.7E-07 68.3 6.5 72 824-902 78-158 (429)
440 3feg_A Choline/ethanolamine ki 95.4 0.019 6.6E-07 64.7 7.1 141 824-970 55-253 (379)
441 3c5i_A Choline kinase; choline 95.2 0.012 4.1E-07 66.5 4.8 72 825-902 39-120 (369)
442 2qg7_A Ethanolamine kinase PV0 94.9 0.042 1.4E-06 63.6 8.3 74 824-903 113-188 (458)
443 3i1a_A Spectinomycin phosphotr 94.9 0.073 2.5E-06 59.2 10.0 32 940-971 205-236 (339)
444 2yle_A Protein spire homolog 1 94.3 0.16 5.4E-06 51.4 9.5 120 902-1041 34-153 (229)
445 3f2s_A CK, chetk-alpha, cholin 92.9 0.15 5.1E-06 57.6 7.5 142 825-970 58-279 (401)
446 3mes_A Choline kinase; malaria 90.3 0.5 1.7E-05 53.8 8.2 74 824-903 75-157 (424)
447 3g15_A CK, chetk-alpha, cholin 78.3 0.48 1.6E-05 53.8 0.4 28 943-970 246-279 (401)
448 3cxl_A N-chimerin; SH2, RHO-GA 70.5 0.57 2E-05 54.2 -1.6 61 823-886 146-214 (463)
449 4ano_A ESSB; membrane protein, 69.8 11 0.00038 38.1 7.9 84 874-970 48-132 (219)
450 4ann_A ESSB; membrane protein, 61.2 10 0.00035 38.2 5.6 117 874-1026 43-159 (215)
451 2ks1_B Epidermal growth factor 53.8 1 3.5E-05 32.6 -2.2 7 789-795 33-39 (44)
452 2l2t_A Receptor tyrosine-prote 52.1 0.87 3E-05 32.8 -2.8 7 789-795 32-38 (44)
453 2k1k_A Ephrin type-A receptor 46.8 1.4 4.9E-05 30.8 -2.3 18 761-778 7-24 (38)
454 3ls8_A Phosphatidylinositol 3- 39.0 1.6E+02 0.0053 34.7 11.7 46 918-970 454-501 (614)
455 2x6h_A GH13170P, VPS34, phosph 30.7 2.1E+02 0.0072 34.2 11.1 45 919-970 529-575 (696)
456 2ks1_B Epidermal growth factor 28.3 7.2 0.00024 28.2 -1.2 18 779-796 26-43 (44)
457 2lz0_A Uncharacterized protein 25.1 97 0.0033 26.7 5.3 70 248-318 5-74 (100)
458 3ox7_P MH027; urokinase-type p 21.2 28 0.00095 20.1 0.6 9 57-65 6-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.6e-96 Score=929.65 Aligned_cols=700 Identities=30% Similarity=0.473 Sum_probs=650.6
Q ss_pred hccCChhhHHHHHHHHHhccCCCCcccCCCCCCCCCCceeeeEEecCCCCcEEEEEecccCCccc---cCCcccCCCCcc
Q 001275 22 SVNALNGDGVALLSLMRHWNSVPPLIISSWNSSDSTPCQWVGIECDDDAHNVVSFNLSSYGVSGQ---LGPEIGHLSKLQ 98 (1109)
Q Consensus 22 ~~~~~~~~~~all~~~~~~~~~~~~~l~sW~~~~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~---~~~~l~~l~~L~ 98 (1109)
...+.++|++||++||+++. ||. .+++|+. +.+||+|.||+|+ +++|++++|+++++.|. +++++++|++|+
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~-~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DKN-LLPDWSS-NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CTT-SSTTCCT-TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred cccCCHHHHHHHHHHHhhCC-Ccc-cccCCCC-CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 33456889999999999997 666 8999985 4579999999998 68999999999999998 999999999999
Q ss_pred EeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCc--cccccCccceeccccccccccCCccc-ccccccceeccc
Q 001275 99 TIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPD--NFENLQNLQYLNLYGNLLDGEIPEPL-FRILGLQYVFLN 175 (1109)
Q Consensus 99 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~L~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls 175 (1109)
.++++.|.+. .+|..++.+++|++|||++|.++|.+|. .++++++|++|+|++|.+++.+|..+ .++++|++|+++
T Consensus 81 ~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 81 SLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp EEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred ccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 9999999886 4678999999999999999999999998 99999999999999999999988877 889999999999
Q ss_pred ccccccccccc---cCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccC
Q 001275 176 NNSLSGSIPRN---VGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLE 252 (1109)
Q Consensus 176 ~n~l~~~~p~~---l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 252 (1109)
+|++++..|.. ++++++|++|++++|++++.+|. +++++|++|+|++|++++.+|. ++++++|++|++++|+++
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence 99999988887 89999999999999999987764 8899999999999999998887 999999999999999999
Q ss_pred CcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCcccccc-ccccEEEcCCCCCCCCCCCcc
Q 001275 253 GRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLL-ARLSSLDLSENQLSGKIPPEL 331 (1109)
Q Consensus 253 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l 331 (1109)
+.++..+..+++|++|+|++|++++.+|.. .+++|++|++++|++++.+|..+... ++|++|++++|++++.+|..|
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH
Confidence 999999999999999999999999877765 88999999999999999999988775 999999999999999999999
Q ss_pred ccccccceeeccCcccCCCCCcc-ccCCCCccEEEccCccccccCchHHHhhc-ccceeeccCCccCCCCchhhhc--cC
Q 001275 332 GKCKYLTVLHLYANQLEGEIPDE-LGQLSNLQDLELFDNRLTGEFPVSIWRIA-SLEYLLVYNNNLLGKLPLEMTE--LK 407 (1109)
Q Consensus 332 ~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~--l~ 407 (1109)
+++++|++|++++|++++.+|.. ++.+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+.. ++
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence 99999999999999999888876 99999999999999999999999999998 9999999999999999988877 88
Q ss_pred CCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhcc
Q 001275 408 QLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILK 487 (1109)
Q Consensus 408 ~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~ 487 (1109)
+|+.|++++|++++.+|..++.+++|++|++++|.+++.+|..+..+++|++|++++|++.+.+|..++.+++|+.|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCC-CCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccC
Q 001275 488 QNQLTGALPE-FSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSL 566 (1109)
Q Consensus 488 ~N~l~~~~~~-~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 566 (1109)
+|++++.+|. +..+++|++|++++|++++.+|.+++++++|++|+|++|+++|.+|..++++++|++|++++|+++|.+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 9999998887 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCccEEEecCc----------------------cccCCCCcccccccccceeccccccccCCCcchhhhhhhh
Q 001275 567 PSQLSKCKNLEVFDVSFN----------------------LLNGSIPSSLRSWKSLSILKLSENHFTGGIPTFISELEKL 624 (1109)
Q Consensus 567 p~~l~~l~~L~~L~ls~N----------------------~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 624 (1109)
|..+..+..+..+++..+ .+.|..|..+..+..++.++++.|.++|.+|..++.+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 999888766655544431 2556777888888999999999999999999999999999
Q ss_pred hhhhcccCcCCCCCCCCchhhhhhhhhhcccccccccccCcchhhcccCCeEEccCCcccccCCC-CCccccceEEeeec
Q 001275 625 LELQLGGNQLGGEIPPSIGALQDLSYALNLSKNGLTGRIPSDLEKLSKLEQLDISSNNLTGTLSP-LSNIHSLVEVNVSY 703 (1109)
Q Consensus 625 ~~L~l~~N~l~g~ip~~~~~l~~l~~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~~~-l~~~~~l~~l~~~~ 703 (1109)
+.|||++|+++|.+|.+++.++.| ..|+|++|+++|.||..++++++|++||||+|+|+|.+|. ++.+++|+.||+|+
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L-~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYL-FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTC-CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred cEEECcCCcccccCCHHHhccccC-CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 999999999999999999999999 4799999999999999999999999999999999999998 99999999999999
Q ss_pred cccccccch--hhhhccCCCCCCCCCCCccccccc
Q 001275 704 NLFTGPVPE--TLMNLLGPSPSSFSGNPSLCVKCL 736 (1109)
Q Consensus 704 n~l~g~~p~--~~~~~~~~~~~~~~gn~~~c~~~~ 736 (1109)
|+|+|+||. ++.+| +..+|.|||++||.++
T Consensus 714 N~l~g~iP~~~~~~~~---~~~~~~gN~~Lcg~~l 745 (768)
T 3rgz_A 714 NNLSGPIPEMGQFETF---PPAKFLNNPGLCGYPL 745 (768)
T ss_dssp SEEEEECCSSSSGGGS---CGGGGCSCTEEESTTS
T ss_pred CcccccCCCchhhccC---CHHHhcCCchhcCCCC
Confidence 999999995 34455 7788999999999886
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.4e-79 Score=773.27 Aligned_cols=625 Identities=31% Similarity=0.474 Sum_probs=582.4
Q ss_pred ecccCCccc--cCCcccCCCCccEeecCCCcccccCCC--CCCCCCCCcEeeccCccccCCCCccc-cccCccceecccc
Q 001275 78 LSSYGVSGQ--LGPEIGHLSKLQTIDLSSNNFSGNIPP--KLGNCSALEYLDLSTNGFTGDIPDNF-ENLQNLQYLNLYG 152 (1109)
Q Consensus 78 l~~~~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~L~~L~~L~L~~ 152 (1109)
+..+...+. +++.++.+++|++|+|++|.++|.+|. .++++++|++|||++|.+++.+|..+ .++++|++|+|++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 333334443 448899999999999999999999998 99999999999999999999888876 8999999999999
Q ss_pred ccccccCCcc---cccccccceecccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccC
Q 001275 153 NLLDGEIPEP---LFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMG 229 (1109)
Q Consensus 153 n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 229 (1109)
|.+++..|.. +.++++|++|++++|++++..|. +.+++|++|+|++|++++.+|. ++++++|++|+|++|++++
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC
Confidence 9999888877 78999999999999999987764 8899999999999999998887 9999999999999999999
Q ss_pred cCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCCCCcccccc-cCCcEEEeecCCCCCcCCcccc
Q 001275 230 FLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNC-SSLTHLDIVGSKLTGSIPSSFG 308 (1109)
Q Consensus 230 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~ 308 (1109)
.+|.++.++++|++|++++|++++.+|.. .+++|++|+|++|++++.+|..+... ++|++|++++|++++.+|..|+
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 99999999999999999999999877765 88999999999999999999988775 9999999999999999999999
Q ss_pred ccccccEEEcCCCCCCCCCCCc-cccccccceeeccCcccCCCCCccccCCC-CccEEEccCccccccCchHHHh--hcc
Q 001275 309 LLARLSSLDLSENQLSGKIPPE-LGKCKYLTVLHLYANQLEGEIPDELGQLS-NLQDLELFDNRLTGEFPVSIWR--IAS 384 (1109)
Q Consensus 309 ~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~--l~~ 384 (1109)
.+++|++|++++|+++|.+|.. ++++++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+.. +++
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 9999999999999999888876 99999999999999999999999999987 9999999999999999998887 889
Q ss_pred cceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCC
Q 001275 385 LEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQ 464 (1109)
Q Consensus 385 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~ 464 (1109)
|++|++++|.+++.+|..+.++++|+.|++++|++++.+|..++.+++|++|++++|.+++.+|..+..+++|++|++++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcccCCCCccchhhccCcccCCCCCC-CCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcc
Q 001275 465 NQFHGPIPSLLGSCPTLWRVILKQNQLTGALPE-FSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMP 543 (1109)
Q Consensus 465 N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 543 (1109)
|++.+.+|..++.+++|+.|++++|++++.+|. ++.+++|++|++++|+++|.+|..++++++|++|++++|+++|.+|
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 999999999999999999999999999998887 9999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccceeecccc----------------------cccccCCccccCCCCccEEEecCccccCCCCcccccccccc
Q 001275 544 QELGNLVSLVTLNISLN----------------------HVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLS 601 (1109)
Q Consensus 544 ~~~~~l~~L~~L~L~~N----------------------~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 601 (1109)
.+++.+..+..+++..+ .+.+..|..+..+..++.++++.|.++|.+|..++.+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 99998887777665542 24566777888888999999999999999999999999999
Q ss_pred eeccccccccCCCcchhhhhhhhhhhhcccCcCCCCCCCCchhhhhhhhhhcccccccccccCcchhhcccCCeEEccCC
Q 001275 602 ILKLSENHFTGGIPTFISELEKLLELQLGGNQLGGEIPPSIGALQDLSYALNLSKNGLTGRIPSDLEKLSKLEQLDISSN 681 (1109)
Q Consensus 602 ~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~l~~l~~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N 681 (1109)
.|+|++|+++|.+|..++.+++|+.|+|++|+++|.||.++++++.| +.|||++|+++|.||..+++++.|++||||+|
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L-~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL-NILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC-CEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC-CEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 99999999999999999999999999999999999999999999999 58999999999999999999999999999999
Q ss_pred cccccCCCCCccccceEEeeeccc-ccc
Q 001275 682 NLTGTLSPLSNIHSLVEVNVSYNL-FTG 708 (1109)
Q Consensus 682 ~l~g~~~~l~~~~~l~~l~~~~n~-l~g 708 (1109)
+|+|.||..+.+..+....+.+|+ +-|
T Consensus 715 ~l~g~iP~~~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 715 NLSGPIPEMGQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp EEEEECCSSSSGGGSCGGGGCSCTEEES
T ss_pred cccccCCCchhhccCCHHHhcCCchhcC
Confidence 999999987777666666666664 444
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-63 Score=625.38 Aligned_cols=590 Identities=21% Similarity=0.179 Sum_probs=376.2
Q ss_pred EecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceecccccccc
Q 001275 77 NLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLD 156 (1109)
Q Consensus 77 ~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~ 156 (1109)
++++.+++ .+|..+. +++++|+|++|++++..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.++
T Consensus 10 ~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 10 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp ECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred ECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC
Confidence 33444443 3565554 78999999999999877778999999999999999999888888999999999999999998
Q ss_pred ccCCcccccccccceecccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcc
Q 001275 157 GEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLS 236 (1109)
Q Consensus 157 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 236 (1109)
+..+..+.++++|++|++++|++++..|..|+++++|++|++++|.+++..|..++++++|++|++++|++++..+..+.
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 166 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhh
Confidence 54445688899999999999999877778889999999999999999988888888999999999999999888777665
Q ss_pred --cccccccccccCcccCCcccccccCCCCcchhccccccccCCCCcccc---cccCCcEEEeecCCCCCcCCccccccc
Q 001275 237 --NLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLG---NCSSLTHLDIVGSKLTGSIPSSFGLLA 311 (1109)
Q Consensus 237 --~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~ 311 (1109)
.+++|++|++++|++++..+..+..+++|+.|++++|.+.+.....+. ..++|+.|++++|.+++..|..|..++
T Consensus 167 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred ccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC
Confidence 457888888888888888888888888888888888776632221111 236777888888877777777777765
Q ss_pred c--ccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceee
Q 001275 312 R--LSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLL 389 (1109)
Q Consensus 312 ~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 389 (1109)
. |+.|++++|++++..|..|+.+++|++|++++|++.+..|..+..+++|++|++++|...+.++.
T Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~------------ 314 (680)
T 1ziw_A 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL------------ 314 (680)
T ss_dssp GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----------------
T ss_pred cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc------------
Confidence 4 77888887777777777777777777777777777777777777777777777777655432210
Q ss_pred ccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccC--CCCccc--CccceEEECCCc
Q 001275 390 VYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEI--PPNLCF--GKQLRVLNMGQN 465 (1109)
Q Consensus 390 l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~--p~~~~~--~~~L~~L~L~~N 465 (1109)
+.+.......+..+++|+.|++++|++++..|..+..+++|++|++++|.++... +..+.. ..+|+.|++++|
T Consensus 315 ---~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 315 ---ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391 (680)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred ---ccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence 0000001113445555666666666665555555555556666666655543211 111211 135666666666
Q ss_pred ccccCCCcccCCCCccchhhccCcccCCCCC--CCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCccc--CC
Q 001275 466 QFHGPIPSLLGSCPTLWRVILKQNQLTGALP--EFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFS--GL 541 (1109)
Q Consensus 466 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~--~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~--~~ 541 (1109)
++.+..|..+..+++|+.|++++|++++.+| .|..+++|++|++++|++++..+..+..+++|+.|++++|+++ +.
T Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 471 (680)
T 1ziw_A 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence 6665555555555555555555555554333 2555666666666666666555666666666666666666654 34
Q ss_pred cchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCC--------cccccccccceeccccccccCC
Q 001275 542 MPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIP--------SSLRSWKSLSILKLSENHFTGG 613 (1109)
Q Consensus 542 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~ 613 (1109)
+|..++.+++|++|+|++|++++..|..+..+++|++|++++|++++..+ ..|..+++|+.|+|++|+++..
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 55556666666666666666665555556666666666666666553211 1234444444444444444421
Q ss_pred CcchhhhhhhhhhhhcccCcCCCCCCCCchhhhhhhhhhcccccccccccCcchh-hcccCCeEEccCCcccc
Q 001275 614 IPTFISELEKLLELQLGGNQLGGEIPPSIGALQDLSYALNLSKNGLTGRIPSDLE-KLSKLEQLDISSNNLTG 685 (1109)
Q Consensus 614 ~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~l~~l~~~L~L~~N~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g 685 (1109)
.+..|..+++|+.|+|++|++++..|..+..++.| ..|+|++|+|++..|..++ .+++|+.|+|++|++..
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL-KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCC-CEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 11234444444444444444442222223333333 2344444444433333333 34444444444444443
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.8e-63 Score=619.55 Aligned_cols=580 Identities=21% Similarity=0.218 Sum_probs=476.9
Q ss_pred CceeeeEEecC---------CCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccC
Q 001275 58 PCQWVGIECDD---------DAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLST 128 (1109)
Q Consensus 58 ~c~w~gv~C~~---------~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 128 (1109)
.|.++.|.|.. -..+++.|+++++.+.+..+..++++++|++|+|++|.+++..|..++++++|++|+|++
T Consensus 3 ~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 3 TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp -CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred eeECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 35566677753 124799999999999987777899999999999999999999999999999999999999
Q ss_pred ccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeecccccCCCCcc
Q 001275 129 NGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIP 208 (1109)
Q Consensus 129 n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 208 (1109)
|++++..+..|+++++|++|+|++|.+++..|..+.++++|++|++++|.+++..|..++++++|++|++++|.+++..+
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 99997666689999999999999999997777889999999999999999999999999999999999999999998888
Q ss_pred cccc--cccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccc---cCCCCcchhccccccccCCCCccc
Q 001275 209 ESIG--NCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGS---EKCKNLTFLDLSYNRFSGGISPNL 283 (1109)
Q Consensus 209 ~~l~--~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~ 283 (1109)
..++ .+++|++|++++|++++..|..|..+++|+.|++++|++.......+ ...++|+.|++++|.+++..+..|
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 7765 45899999999999999999999999999999999998864332221 134789999999999999989999
Q ss_pred ccccC--CcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCC-----CCCc---
Q 001275 284 GNCSS--LTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEG-----EIPD--- 353 (1109)
Q Consensus 284 ~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-----~~p~--- 353 (1109)
.+++. |+.|++++|++++..|..|+.+++|++|++++|++++..|..|.++++|+.|++++|...+ .+|.
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 88865 9999999999999889999999999999999999999999999999999999999887654 2333
Q ss_pred -cccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCC--Cchhhhcc--CCCCeEEccCCcCcccCCcccc
Q 001275 354 -ELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGK--LPLEMTEL--KQLKNISLYNNQFSGVIPQSLG 428 (1109)
Q Consensus 354 -~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~l--~~L~~L~L~~N~l~~~~p~~~~ 428 (1109)
.+..+++|++|++++|++++..+..+..+++|++|++++|.+... .+..+..+ ++|+.|++++|++++..|..+.
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 678889999999999999988888888999999999999886432 22334433 5889999999999988888888
Q ss_pred CCCCCceEEecCCcccccCC-CCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccC--CCCCC-CCCCCCC
Q 001275 429 INSSLMQLDFINNSFTGEIP-PNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLT--GALPE-FSKNPVL 504 (1109)
Q Consensus 429 ~~~~L~~L~ls~N~l~~~~p-~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~--~~~~~-~~~~~~L 504 (1109)
.+++|++|++++|.+++.+| ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.++ +..|. |..+++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 88999999999999887666 56777888899999999888888888888888888888888876 34444 7777888
Q ss_pred ceEEeecCccCCCCCCcccccccccEEeccCCcccCCcc--------hhhhcccccceeecccccccccCCccccCCCCc
Q 001275 505 SHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMP--------QELGNLVSLVTLNISLNHVEGSLPSQLSKCKNL 576 (1109)
Q Consensus 505 ~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 576 (1109)
++|++++|+|++..|..+.++++|++|+|++|++++..+ ..++.+++|++|+|++|+++...+..|..+++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 888888888887767777788888888888888775422 236667777777777777774333457777777
Q ss_pred cEEEecCccccCCCCcccccccccceeccccccccCCCcchhh-hhhhhhhhhcccCcCCCC
Q 001275 577 EVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIPTFIS-ELEKLLELQLGGNQLGGE 637 (1109)
Q Consensus 577 ~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~l~~N~l~g~ 637 (1109)
+.|||++|+|++..+..|..+++|+.|+|++|++++..|..+. .+++|+.|++++|++...
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 7777777777755555566777777777777777766666565 566677777777766643
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.7e-58 Score=568.68 Aligned_cols=523 Identities=19% Similarity=0.175 Sum_probs=394.9
Q ss_pred ccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCccccc
Q 001275 86 QLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFR 165 (1109)
Q Consensus 86 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~ 165 (1109)
.+|..+. +++++|+|++|++++..|..|+++++|++|+|++|++++..|..|+++++|++|+|++|.+++..|..+.+
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 3454443 36899999999999988999999999999999999999988999999999999999999999888999999
Q ss_pred ccccceecccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccc--c
Q 001275 166 ILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLV--Y 243 (1109)
Q Consensus 166 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~--~ 243 (1109)
+++|++|++++|++++..+..++++++|++|++++|++++..+..+..+++|++|++++|++++..|..|+.+++|+ .
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence 99999999999999988788999999999999999999986555555699999999999999998899999999999 8
Q ss_pred ccccCcccCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCC-----cCCccccccc--cccEE
Q 001275 244 LDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTG-----SIPSSFGLLA--RLSSL 316 (1109)
Q Consensus 244 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~--~L~~L 316 (1109)
|++++|++++..+..+.. .+|++|++++|. ..+..+..+.+++...+.-+.+.+ ..+..|..+. +|+.|
T Consensus 184 L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 184 LNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp EECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred EecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 999999999877766654 689999999886 334555566655555554433321 2233444443 67888
Q ss_pred EcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccC
Q 001275 317 DLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLL 396 (1109)
Q Consensus 317 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 396 (1109)
++++|.+++..+..|+.+++|++|++++|+++ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 88888888777777888888888888888887 67777888888888888888888766777777777777777777777
Q ss_pred CCCch-hhhccCCCCeEEccCCcCcccC--CccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCc
Q 001275 397 GKLPL-EMTELKQLKNISLYNNQFSGVI--PQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPS 473 (1109)
Q Consensus 397 ~~~~~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~ 473 (1109)
+.+|. .+..+++|+.|++++|++++.. |..++.+++|++|++++|.+++..|..+..+++|++|++++|++.+..|.
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc
Confidence 55544 3677777777777777776654 55666666666666666666666666666666666666666665544332
Q ss_pred ccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCC---cchhhhccc
Q 001275 474 LLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGL---MPQELGNLV 550 (1109)
Q Consensus 474 ~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~ 550 (1109)
. .+..+++|++|++++|.+++..|..++.+++|++|++++|++++. .+..++.++
T Consensus 419 ~----------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 476 (606)
T 3t6q_A 419 S----------------------PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476 (606)
T ss_dssp C----------------------TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT
T ss_pred h----------------------hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC
Confidence 1 155566666666666666666666666677777777777766652 224566677
Q ss_pred ccceeecccccccccCCccccCCCCccEEEecCccccCCCCcccccccccceeccccccccCCCcchhhhhhhhhhhhcc
Q 001275 551 SLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIPTFISELEKLLELQLG 630 (1109)
Q Consensus 551 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 630 (1109)
+|++|++++|++++..|..+..+++|+.|||++|++++..|..+..+++| .|+|++|++++..|..+..+++|+.|+++
T Consensus 477 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 77777777777776666777777777777777777777667777777777 77777777776666667777777777777
Q ss_pred cCcCCCCC
Q 001275 631 GNQLGGEI 638 (1109)
Q Consensus 631 ~N~l~g~i 638 (1109)
+|++.+..
T Consensus 556 ~N~~~c~c 563 (606)
T 3t6q_A 556 QNPLDCTC 563 (606)
T ss_dssp TCCEECSG
T ss_pred CCCccccC
Confidence 77776543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.9e-58 Score=567.65 Aligned_cols=529 Identities=20% Similarity=0.202 Sum_probs=407.6
Q ss_pred CCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccccc
Q 001275 103 SSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGS 182 (1109)
Q Consensus 103 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 182 (1109)
++..++ .+|..+. +.+++|||++|.+++..|..|+++++|++|+|++|.+++..|..+.++++|++|+|++|++++.
T Consensus 20 ~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 20 ENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM 96 (606)
T ss_dssp TTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE
T ss_pred CCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc
Confidence 344555 5676664 4799999999999988899999999999999999999988899999999999999999999988
Q ss_pred cccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCC
Q 001275 183 IPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKC 262 (1109)
Q Consensus 183 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 262 (1109)
.|..|+++++|++|++++|++++..|..|+++++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence 89999999999999999999998878889999999999999999998665566669999999999999998888888888
Q ss_pred CCcc--hhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCC-----CCCCcccccc
Q 001275 263 KNLT--FLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSG-----KIPPELGKCK 335 (1109)
Q Consensus 263 ~~L~--~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~p~~l~~l~ 335 (1109)
++|+ .|++++|.+++..+..+.. .+|+.|++++|. .++..+..+.++....+..+.+.+ ..+..+..+.
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred cccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 8888 7889999988766666544 678888888886 345555556555554444333321 1122233332
Q ss_pred --ccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEE
Q 001275 336 --YLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNIS 413 (1109)
Q Consensus 336 --~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 413 (1109)
+|+.|++++|.+++..+..|+.+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|+
T Consensus 253 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred cCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 4566666666666555555566666666666666655 4455555555555555555555544444555555555555
Q ss_pred ccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCC--CcccCCCCccchhhccCccc
Q 001275 414 LYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPI--PSLLGSCPTLWRVILKQNQL 491 (1109)
Q Consensus 414 L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~l~l~~N~l 491 (1109)
+++|++.+.+|.. .+..+++|++|++++|++.+.. |..++.+++|+.|++++|++
T Consensus 332 l~~n~~~~~~~~~-----------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 388 (606)
T 3t6q_A 332 IKGNTKRLELGTG-----------------------CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388 (606)
T ss_dssp CCSCSSCCBCCSS-----------------------TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC
T ss_pred CCCCCcccccchh-----------------------hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC
Confidence 5555554433332 1444445555555555554433 44555555666666666666
Q ss_pred CCCCCC-CCCCCCCceEEeecCccCCCCCCc-ccccccccEEeccCCcccCCcchhhhcccccceeeccccccccc---C
Q 001275 492 TGALPE-FSKNPVLSHLDVSRNNISGAIPSS-IGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGS---L 566 (1109)
Q Consensus 492 ~~~~~~-~~~~~~L~~L~Ls~N~i~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~ 566 (1109)
++..|. |..+++|++|++++|++++..|.. +.++++|++|++++|++++..|..++.+++|++|++++|++++. .
T Consensus 389 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 468 (606)
T 3t6q_A 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468 (606)
T ss_dssp EEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS
T ss_pred CcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc
Confidence 555554 777888999999999998776654 89999999999999999999999999999999999999999873 3
Q ss_pred CccccCCCCccEEEecCccccCCCCcccccccccceeccccccccCCCcchhhhhhhhhhhhcccCcCCCCCCCCchhhh
Q 001275 567 PSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIPTFISELEKLLELQLGGNQLGGEIPPSIGALQ 646 (1109)
Q Consensus 567 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~l~ 646 (1109)
+..+..+++|+.|++++|++++..|..|..+++|+.|+|++|++++..|..+..+++| .|+|++|++++.+|..++.++
T Consensus 469 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~ 547 (606)
T 3t6q_A 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS 547 (606)
T ss_dssp SCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHH
T ss_pred chhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCC
Confidence 4679999999999999999999999999999999999999999999999999999999 999999999988888899999
Q ss_pred hhhhhhcccccccccccC
Q 001275 647 DLSYALNLSKNGLTGRIP 664 (1109)
Q Consensus 647 ~l~~~L~L~~N~l~g~ip 664 (1109)
+| ..|++++|.+++..+
T Consensus 548 ~L-~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 548 QQ-RTINLRQNPLDCTCS 564 (606)
T ss_dssp TS-SEEECTTCCEECSGG
T ss_pred CC-CEEeCCCCCccccCC
Confidence 99 579999999997665
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-58 Score=571.10 Aligned_cols=500 Identities=18% Similarity=0.255 Sum_probs=306.6
Q ss_pred CChhhHHHHHHHHHhccCCCCcc-------cCCCCCCCCCCcee---eeEEecCCCCcEEEEEecccCCccccCCcccCC
Q 001275 25 ALNGDGVALLSLMRHWNSVPPLI-------ISSWNSSDSTPCQW---VGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHL 94 (1109)
Q Consensus 25 ~~~~~~~all~~~~~~~~~~~~~-------l~sW~~~~~~~c~w---~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l 94 (1109)
....|++||.+++++++++.+.. ..+|+.+ .+||.| .||+|+.. +||++|+|+++++.|.+|+++++|
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L 104 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQL 104 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGC
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-CCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcC
Confidence 34579999999999987665443 3489865 679999 99999865 899999999999999999999999
Q ss_pred CCccEeecCCCccc------c------cCCCCCCCCCCCcEeeccCccccCCCCccccc-cCccceeccccccccccCCc
Q 001275 95 SKLQTIDLSSNNFS------G------NIPPKLGNCSALEYLDLSTNGFTGDIPDNFEN-LQNLQYLNLYGNLLDGEIPE 161 (1109)
Q Consensus 95 ~~L~~L~L~~n~l~------~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-L~~L~~L~L~~n~l~~~~p~ 161 (1109)
++|++|+|++|.+. | .+|... +..|+ +++++|.+.+.+|..+.. +.++..+++....+..
T Consensus 105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~---- 177 (636)
T 4eco_A 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK---- 177 (636)
T ss_dssp TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC----
T ss_pred ccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc----
Confidence 99999999999872 2 333322 56677 888888888887777663 2344444444322210
Q ss_pred ccccccccceeccc--ccccccccccccCCCcccceeecccccCCCC-----------------cccccc--cccCccEE
Q 001275 162 PLFRILGLQYVFLN--NNSLSGSIPRNVGDLKEVEALWLFSNRLSGT-----------------IPESIG--NCYRLQEL 220 (1109)
Q Consensus 162 ~l~~l~~L~~L~Ls--~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-----------------~p~~l~--~l~~L~~L 220 (1109)
.....++.+.+. +|+++| +|..|+++++|++|+|++|++++. +|..++ ++++|++|
T Consensus 178 --~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L 254 (636)
T 4eco_A 178 --SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254 (636)
T ss_dssp --CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred --ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence 111122222222 355555 555555555555555555555553 555555 55556666
Q ss_pred EeccccccCcCchhcccccccccccccCcc-cCC-cccccccCC------CCcchhccccccccCCCCc--ccccccCCc
Q 001275 221 YLNENKLMGFLPESLSNLENLVYLDVGDNN-LEG-RINFGSEKC------KNLTFLDLSYNRFSGGISP--NLGNCSSLT 290 (1109)
Q Consensus 221 ~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~-~~~~~~~~l------~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~ 290 (1109)
+|++|++.+.+|+.|+++++|++|++++|+ +++ .+|..+..+ ++|++|+|++|+++ .+|. .++++++|+
T Consensus 255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG 333 (636)
T ss_dssp EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred EecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence 666555555555555555556666666555 555 455544443 56666666666665 4555 566666666
Q ss_pred EEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccc-cceeeccCcccCCCCCccccCCC--CccEEEcc
Q 001275 291 HLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKY-LTVLHLYANQLEGEIPDELGQLS--NLQDLELF 367 (1109)
Q Consensus 291 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~L~ 367 (1109)
+|++++|+++|.+| .|+.+++|++|++++|+++ .+|..++.+++ |++|++++|+++ .+|..+..++ +|++|+++
T Consensus 334 ~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp EEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECC
T ss_pred EEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECc
Confidence 66666666665555 5566666666666666665 55555666666 666666666665 4555555433 56666666
Q ss_pred CccccccCchHHH-------hhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccC-C-------CC
Q 001275 368 DNRLTGEFPVSIW-------RIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGI-N-------SS 432 (1109)
Q Consensus 368 ~N~l~~~~~~~~~-------~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~-------~~ 432 (1109)
+|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|+|++|+++ .+|..+.. . ++
T Consensus 411 ~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGG
T ss_pred CCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCC
Confidence 6666655555555 4556666666666666333333444666666666666666 34433322 1 16
Q ss_pred CceEEecCCcccccCCCCcc--cCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEee
Q 001275 433 LMQLDFINNSFTGEIPPNLC--FGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVS 510 (1109)
Q Consensus 433 L~~L~ls~N~l~~~~p~~~~--~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls 510 (1109)
|++|++++|.++ .+|..+. .+++|+.|+|++|+|++ +|..++.+++|+.|++++|+ +++
T Consensus 490 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~-----------------~ls 550 (636)
T 4eco_A 490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR-----------------DAQ 550 (636)
T ss_dssp CCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB-----------------CTT
T ss_pred ccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc-----------------ccc
Confidence 666666666666 5666555 66666666666666665 56666666666666665443 234
Q ss_pred cCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeeccccccc
Q 001275 511 RNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVE 563 (1109)
Q Consensus 511 ~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 563 (1109)
+|++.+.+|..++++++|++|+|++|++ +.+|..+. ++|++|+|++|++.
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 5555555555555555566666666655 34555444 45666666666544
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-56 Score=569.21 Aligned_cols=526 Identities=21% Similarity=0.197 Sum_probs=287.0
Q ss_pred EeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeeccccc
Q 001275 123 YLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNR 202 (1109)
Q Consensus 123 ~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~ 202 (1109)
..|.++++++ .+|. -.++|++|+|++|.+++..|..+.++++|++|+|++|.+.+.+
T Consensus 8 ~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i------------------- 64 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI------------------- 64 (844)
T ss_dssp EEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE-------------------
T ss_pred EEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcccc-------------------
Confidence 4455555555 3443 2345555555555555444555555555555555555333333
Q ss_pred CCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCccccc--ccCCCCcchhccccccccCCCC
Q 001275 203 LSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFG--SEKCKNLTFLDLSYNRFSGGIS 280 (1109)
Q Consensus 203 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~ 280 (1109)
.|..|+++++|++|+|++|++++..|++|.++++|++|+|++|++++..+.. +..+++|++|+|++|.+++..+
T Consensus 65 ----~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~ 140 (844)
T 3j0a_A 65 ----DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140 (844)
T ss_dssp ----CTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred ----CHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc
Confidence 1444555555555555555555545555555555555555555555433322 5555555556666665554433
Q ss_pred -cccccccCCcEEEeecCCCCCcCCcccccc--ccccEEEcCCCCCCCCCCCccccccc------cceeeccCcccCCCC
Q 001275 281 -PNLGNCSSLTHLDIVGSKLTGSIPSSFGLL--ARLSSLDLSENQLSGKIPPELGKCKY------LTVLHLYANQLEGEI 351 (1109)
Q Consensus 281 -~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~l~~l~~------L~~L~L~~N~l~~~~ 351 (1109)
..|+++++|++|++++|.+++..+..++.+ ++|+.|++++|.+.+..|..++.+.+ |+.|++++|.+++..
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 220 (844)
T 3j0a_A 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220 (844)
T ss_dssp CGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTT
T ss_pred chhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhH
Confidence 356666666666666666666666666655 66666677776666666665555544 677777777766666
Q ss_pred CccccCC---CCccEEEccCcccc---------ccCchHHHhh--cccceeeccCCccCCCCchhhhccCCCCeEEccCC
Q 001275 352 PDELGQL---SNLQDLELFDNRLT---------GEFPVSIWRI--ASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNN 417 (1109)
Q Consensus 352 p~~l~~l---~~L~~L~L~~N~l~---------~~~~~~~~~l--~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N 417 (1109)
+..+... ++++.|.++.+.+. +..+..+..+ ++|+.|++++|.+.+..|..+..+++|+.|+|++|
T Consensus 221 ~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 300 (844)
T 3j0a_A 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300 (844)
T ss_dssp TSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC
T ss_pred HHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC
Confidence 6555432 45666666643322 2222222222 44555555555555545555555555555555555
Q ss_pred cCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCC
Q 001275 418 QFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPE 497 (1109)
Q Consensus 418 ~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 497 (1109)
++++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++++.
T Consensus 301 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i--- 377 (844)
T 3j0a_A 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI--- 377 (844)
T ss_dssp CCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC---
T ss_pred cCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc---
Confidence 55555555555555555555555555544455555555555555555555544444444455555555555544421
Q ss_pred CCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCcc
Q 001275 498 FSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLE 577 (1109)
Q Consensus 498 ~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 577 (1109)
..+++|+.|++++|+++ .+|.. ..+++.|++++|++++... +..+..+++|+
T Consensus 378 -~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~-----------------------~~~~~~l~~L~ 429 (844)
T 3j0a_A 378 -HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDI-----------------------LYFLLRVPHLQ 429 (844)
T ss_dssp -SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTT-----------------------HHHHTTCTTCC
T ss_pred -cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCch-----------------------hhhhhcCCccc
Confidence 11444455555555554 23322 2334444455444443211 11233445555
Q ss_pred EEEecCccccCCCCc-ccccccccceecccccccc-----CCCcchhhhhhhhhhhhcccCcCCCCCCCCchhhhhhhhh
Q 001275 578 VFDVSFNLLNGSIPS-SLRSWKSLSILKLSENHFT-----GGIPTFISELEKLLELQLGGNQLGGEIPPSIGALQDLSYA 651 (1109)
Q Consensus 578 ~L~ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~l~~l~~~ 651 (1109)
.|+|++|++++..+. .+..+++|+.|+|++|.++ +..|..+..+++|+.|+|++|++++.+|..++.++.| ..
T Consensus 430 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~ 508 (844)
T 3j0a_A 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL-RG 508 (844)
T ss_dssp EEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC-SE
T ss_pred eeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh-he
Confidence 555555555533222 2333455555555555554 2334455666666666666666666666666666666 35
Q ss_pred hcccccccccccCcchhhcccCCeEEccCCcccccCCCCCccccceEEeeeccccccccc
Q 001275 652 LNLSKNGLTGRIPSDLEKLSKLEQLDISSNNLTGTLSPLSNIHSLVEVNVSYNLFTGPVP 711 (1109)
Q Consensus 652 L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~~~l~~~~~l~~l~~~~n~l~g~~p 711 (1109)
|+|++|+|++..|..+. ++|+.|||++|+|+|.+|.. +.+|+.+++++|++.+..+
T Consensus 509 L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 509 LSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp EEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred eECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 77777777754444444 78888888888888887762 3468888899998887665
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-56 Score=555.53 Aligned_cols=526 Identities=20% Similarity=0.177 Sum_probs=369.0
Q ss_pred EEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccc
Q 001275 76 FNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLL 155 (1109)
Q Consensus 76 l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l 155 (1109)
++.++.+++ .+|..+. ++|++|+|++|++++..+..|+++++|++|+|++|++++..|..|+++++|++|+|++|.+
T Consensus 16 ~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 16 YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp EECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 445555554 3555553 7899999999999988888999999999999999999988888999999999999999999
Q ss_pred cccCCcccccccccceecccccccccccccccCCCcccceeecccccCCC-CcccccccccCccEEEeccccccCcCchh
Q 001275 156 DGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSG-TIPESIGNCYRLQELYLNENKLMGFLPES 234 (1109)
Q Consensus 156 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 234 (1109)
++..|..+.++++|++|++++|++++..+..++++++|++|++++|++++ .+|..|+++++|++|++++|++++..+..
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence 98889999999999999999999998877889999999999999999986 57999999999999999999999988888
Q ss_pred cccccccc----cccccCcccCCcccccccCCCCcchhcccccccc-CCCCcccccccCCcEEEeecCCCCCc------C
Q 001275 235 LSNLENLV----YLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFS-GGISPNLGNCSSLTHLDIVGSKLTGS------I 303 (1109)
Q Consensus 235 l~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~------~ 303 (1109)
|+.+++|+ +|++++|++++..+..+... +|++|++++|.++ +..+..+.++++|+.+++..+.+.+. .
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~ 251 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred hhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccC
Confidence 88888776 69999999987766666555 8999999999886 35667788888888888876655421 1
Q ss_pred Cccccccc--cccEEEc-CCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHH
Q 001275 304 PSSFGLLA--RLSSLDL-SENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIW 380 (1109)
Q Consensus 304 ~~~~~~l~--~L~~L~L-s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 380 (1109)
+..+..+. .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|++|++++|++ +.+| .+
T Consensus 252 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~- 325 (606)
T 3vq2_A 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL- 325 (606)
T ss_dssp GGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-
T ss_pred hHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-
Confidence 11222222 3455555 55666666665 667777777777777775 344 566667777777777776 3555 33
Q ss_pred hhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCccc--CCccccCCCCCceEEecCCcccccCCCCcccCccce
Q 001275 381 RIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGV--IPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLR 458 (1109)
Q Consensus 381 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~ 458 (1109)
.+++|+.|++++|...+.. .+..+++|+.|++++|++++. +|..++.+++|++|++++|.+++ +|..+..+++|+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~ 402 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQ 402 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCC
T ss_pred CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCC
Confidence 6666666666666444322 445566666666666666554 25555555666666666666553 334555555555
Q ss_pred EEECCCcccccCCC-cccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCc
Q 001275 459 VLNMGQNQFHGPIP-SLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNK 537 (1109)
Q Consensus 459 ~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~ 537 (1109)
.|++++|++.+..| .. +..+++|++|++++|++++.+|..++++++|++|++++|+
T Consensus 403 ~L~l~~n~l~~~~~~~~-----------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSA-----------------------FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp EEECTTSEEESTTTTTT-----------------------TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred eeECCCCccCCccChhh-----------------------hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 55555555554433 23 5555566666666666665566666666666666666666
Q ss_pred ccC-CcchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCCcccccccccceeccccccccCCCcc
Q 001275 538 FSG-LMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIPT 616 (1109)
Q Consensus 538 l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 616 (1109)
+++ .+|..++.+++|++|+|++|++++..|..+..+++|+.|++++|++++..|..|..+++|+.|+|++|+++ .+|.
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 665 24555666666666666666666655666666666666666666666555666666666666666666666 5555
Q ss_pred hhhhhh-hhhhhhcccCcCCCCC
Q 001275 617 FISELE-KLLELQLGGNQLGGEI 638 (1109)
Q Consensus 617 ~~~~l~-~L~~L~l~~N~l~g~i 638 (1109)
.+..++ +|+.|++++|++.+..
T Consensus 539 ~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CGGGSCTTCCEEECCSCCCCCSS
T ss_pred hHhhhcccCcEEEccCCCcccCC
Confidence 566654 3666666666666433
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.6e-57 Score=558.15 Aligned_cols=542 Identities=21% Similarity=0.192 Sum_probs=392.5
Q ss_pred cceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEecc
Q 001275 145 LQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNE 224 (1109)
Q Consensus 145 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 224 (1109)
.++++.+++.++ .+|..+. ++|++|++++|++++..+..|+++++|++|+|++|++++..|..|+++++|++|+|++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 356778888777 6676554 5777777777777776666777777777777777777766677777777777777777
Q ss_pred ccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccC-CCCcccccccCCcEEEeecCCCCCcC
Q 001275 225 NKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSG-GISPNLGNCSSLTHLDIVGSKLTGSI 303 (1109)
Q Consensus 225 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~ 303 (1109)
|++++..|++|+++++|++|++++|++++..+..+..+++|++|+|++|.+++ .+|..|+++++|++|++++|++++..
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 77777767777777777777777777776665666666666666666666664 34666666666666666666666655
Q ss_pred Ccccccccccc----EEEcCCCCCCCCCCCccccccccceeeccCcccC-CCCCccccCCCCccEEEccCccccccCchH
Q 001275 304 PSSFGLLARLS----SLDLSENQLSGKIPPELGKCKYLTVLHLYANQLE-GEIPDELGQLSNLQDLELFDNRLTGEFPVS 378 (1109)
Q Consensus 304 ~~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 378 (1109)
+..|+.+++|+ +|++++|.+++..+..+... +|+.|++++|.+. +..|..+.++++|+.+++..+.+.+..
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--- 245 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--- 245 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC---
T ss_pred hhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC---
Confidence 66565555544 56666666664444343333 5666666666554 234445555555555555443332110
Q ss_pred HHhhcccceeeccCCccCCCCchhhhccC--CCCeEEc-cCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCc
Q 001275 379 IWRIASLEYLLVYNNNLLGKLPLEMTELK--QLKNISL-YNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGK 455 (1109)
Q Consensus 379 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~--~L~~L~L-~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~ 455 (1109)
.+....+..+..+. .++.+++ ..|.+++.+|. +..+++|+.|++++|.++ .+| .+..++
T Consensus 246 ---------------~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~ 307 (606)
T 3vq2_A 246 ---------------NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHF 307 (606)
T ss_dssp ---------------CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTC
T ss_pred ---------------cccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccc
Confidence 00001111111111 3444555 55666666655 666666666666666665 344 556666
Q ss_pred cceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCC--CCCcccccccccEEec
Q 001275 456 QLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGA--IPSSIGNSINLTSIDF 533 (1109)
Q Consensus 456 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~--~p~~~~~l~~L~~L~L 533 (1109)
+|+.|++++|++ +.+|.. .+++|+.|++++|+..+.. .+..+++|++|++++|++++. +|..+..+++|++|++
T Consensus 308 ~L~~L~l~~n~l-~~lp~~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L 383 (606)
T 3vq2_A 308 KWQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383 (606)
T ss_dssp CCSEEEEESCCC-SSCCCC--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEEC
T ss_pred cCCEEEcccccC-cccccC--CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeEC
Confidence 677777777776 456633 6677777777777554433 467788899999999999866 3788889999999999
Q ss_pred cCCcccCCcchhhhcccccceeecccccccccCC-ccccCCCCccEEEecCccccCCCCcccccccccceeccccccccC
Q 001275 534 SSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLP-SQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTG 612 (1109)
Q Consensus 534 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 612 (1109)
++|++++ +|..++.+++|++|++++|++++..| ..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++
T Consensus 384 ~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 384 SFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp CSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence 9999885 66888999999999999999998877 688899999999999999999899999999999999999999997
Q ss_pred C-CcchhhhhhhhhhhhcccCcCCCCCCCCchhhhhhhhhhcccccccccccCcchhhcccCCeEEccCCcccccCCCCC
Q 001275 613 G-IPTFISELEKLLELQLGGNQLGGEIPPSIGALQDLSYALNLSKNGLTGRIPSDLEKLSKLEQLDISSNNLTGTLSPLS 691 (1109)
Q Consensus 613 ~-~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~l~~l~~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~~~l~ 691 (1109)
. +|..++.+++|+.|+|++|++++.+|..++.+++| ..|+|++|++++.+|..++++++|++|||++|+|+..++.+.
T Consensus 463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~ 541 (606)
T 3vq2_A 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL-QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541 (606)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGG
T ss_pred cchHHhhccCCCCCEEECCCCcCCccChhhhcccccC-CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHh
Confidence 4 78889999999999999999998889999999999 479999999999899999999999999999999995444488
Q ss_pred ccc-cceEEeeeccccccccc-hhhhhc
Q 001275 692 NIH-SLVEVNVSYNLFTGPVP-ETLMNL 717 (1109)
Q Consensus 692 ~~~-~l~~l~~~~n~l~g~~p-~~~~~~ 717 (1109)
.++ +|+.+++++|++.+..+ .++..|
T Consensus 542 ~l~~~L~~l~l~~N~~~c~c~~~~~~~~ 569 (606)
T 3vq2_A 542 HFPKSLAFFNLTNNSVACICEHQKFLQW 569 (606)
T ss_dssp GSCTTCCEEECCSCCCCCSSTTHHHHTT
T ss_pred hhcccCcEEEccCCCcccCCccHHHHHH
Confidence 886 59999999999998777 445555
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-56 Score=559.93 Aligned_cols=501 Identities=18% Similarity=0.277 Sum_probs=309.6
Q ss_pred ccCChhhHHHHHHHHHhccCCCCcccCCCCCCC----CCC--cee------------eeEEecCCCCcEEEEEecccCCc
Q 001275 23 VNALNGDGVALLSLMRHWNSVPPLIISSWNSSD----STP--CQW------------VGIECDDDAHNVVSFNLSSYGVS 84 (1109)
Q Consensus 23 ~~~~~~~~~all~~~~~~~~~~~~~l~sW~~~~----~~~--c~w------------~gv~C~~~~~~v~~l~l~~~~l~ 84 (1109)
+++..+|++||++||+++.+ | +|+.++ .+| |.| .||+|+. .+||++|+|+++++.
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~-~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDG-K-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTG-G-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred cccchHHHHHHHHHHHHcCC-C-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence 34567899999999999953 4 787654 334 999 9999987 689999999999999
Q ss_pred cccCCcccCCCCccEeec-CCCcccccCCCCCCCCC-CCc-----Ee---------ec-cCcccc-----------CCCC
Q 001275 85 GQLGPEIGHLSKLQTIDL-SSNNFSGNIPPKLGNCS-ALE-----YL---------DL-STNGFT-----------GDIP 136 (1109)
Q Consensus 85 ~~~~~~l~~l~~L~~L~L-~~n~l~~~~p~~l~~l~-~L~-----~L---------~L-s~n~l~-----------~~~p 136 (1109)
|.+|++|++|++|++|+| ++|.++|..|....... .+. .+ +. ....+. ...+
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 88999887553211110 000 00 00 000000 0011
Q ss_pred ccccccCccceecccc--ccccccCCcccccccccceeccccccccc-----------------ccccccC--CCcccce
Q 001275 137 DNFENLQNLQYLNLYG--NLLDGEIPEPLFRILGLQYVFLNNNSLSG-----------------SIPRNVG--DLKEVEA 195 (1109)
Q Consensus 137 ~~l~~L~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~~L~~ 195 (1109)
........++.+.+.. |.+++ +|..++++++|++|+|++|++++ .+|..++ ++++|++
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 1112233444444444 66665 67777777777777777777776 4777777 8888888
Q ss_pred eecccccCCCCcccccccccCccEEEecccc-ccC-cCchhccccc-------ccccccccCcccCCcccc--cccCCCC
Q 001275 196 LWLFSNRLSGTIPESIGNCYRLQELYLNENK-LMG-FLPESLSNLE-------NLVYLDVGDNNLEGRINF--GSEKCKN 264 (1109)
Q Consensus 196 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~-~~~~~l~~l~-------~L~~L~L~~N~l~~~~~~--~~~~l~~ 264 (1109)
|+|++|++.+.+|..|+++++|++|+|++|+ +++ .+|..+++++ +|++|+|++|+++ .+|. .+..+++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 8888888888888888888888888888887 777 6777766665 7777777777777 5555 6666777
Q ss_pred cchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCcccccccc-ccEEEcCCCCCCCCCCCccccccc--cceee
Q 001275 265 LTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLAR-LSSLDLSENQLSGKIPPELGKCKY--LTVLH 341 (1109)
Q Consensus 265 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ 341 (1109)
|++|+|++|+++ .+| .|+.+++|+.|++++|+++ .+|..+..+++ |+.|+|++|+++ .+|..+..++. |+.|+
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence 777777777766 555 6666777777777777776 56666666666 777777777766 56666655543 77777
Q ss_pred ccCcccCCCCCccc---c--CCCCccEEEccCccccccCchHHH-hhcccceeeccCCccCCCCchhhhc--------cC
Q 001275 342 LYANQLEGEIPDEL---G--QLSNLQDLELFDNRLTGEFPVSIW-RIASLEYLLVYNNNLLGKLPLEMTE--------LK 407 (1109)
Q Consensus 342 L~~N~l~~~~p~~l---~--~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~--------l~ 407 (1109)
|++|++.+.+|... . .+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|+++ .+|..+.. ++
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGG
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccC
Confidence 77777766554321 2 2336666666666666 3444433 5666666666666666 34433222 12
Q ss_pred CCCeEEccCCcCcccCCcccc--CCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhh
Q 001275 408 QLKNISLYNNQFSGVIPQSLG--INSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVI 485 (1109)
Q Consensus 408 ~L~~L~L~~N~l~~~~p~~~~--~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ 485 (1109)
+|+.|+|++|+|+ .+|..+. .+++|+.|+|++|.|++ +|..+..+++|+.|+|++|+ +
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------~ 788 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------D 788 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------C
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------------C
Confidence 5555666666555 4455554 55555555555555554 45555555555555555543 2
Q ss_pred ccCcccCCCCCC-CCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeeccccc
Q 001275 486 LKQNQLTGALPE-FSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNH 561 (1109)
Q Consensus 486 l~~N~l~~~~~~-~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 561 (1109)
+++|++.+.+|. +..+++|++|+|++|+| +.+|..+. ++|+.|||++|++....+..+.....+..+.|.+|.
T Consensus 789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred cccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 334444444443 44455555555555555 34444443 345555555555544333444433334444444443
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.2e-55 Score=556.39 Aligned_cols=521 Identities=21% Similarity=0.233 Sum_probs=359.8
Q ss_pred EecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCC-CccccccCccceeccccccc
Q 001275 77 NLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDI-PDNFENLQNLQYLNLYGNLL 155 (1109)
Q Consensus 77 ~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~L~~L~~L~L~~n~l 155 (1109)
+.++++++. +|. ..++|++|||++|.+++..|..|+++++|++|||++|.+.+.+ |..|+++++|++|+|++|.+
T Consensus 10 dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 10 FYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred EccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 445555554 454 4578999999999999888999999999999999999666555 77899999999999999999
Q ss_pred cccCCcccccccccceecccccccccccccc--cCCCcccceeecccccCCCCcc-cccccccCccEEEeccccccCcCc
Q 001275 156 DGEIPEPLFRILGLQYVFLNNNSLSGSIPRN--VGDLKEVEALWLFSNRLSGTIP-ESIGNCYRLQELYLNENKLMGFLP 232 (1109)
Q Consensus 156 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~ 232 (1109)
++..|..+.++++|++|+|++|.+++.+|.. |+++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 9888999999999999999999999877665 8999999999999999987765 578999999999999999999889
Q ss_pred hhcccc--cccccccccCcccCCcccccccCCCC------cchhccccccccCCCCcccccc---cCCcEEEeecCCC--
Q 001275 233 ESLSNL--ENLVYLDVGDNNLEGRINFGSEKCKN------LTFLDLSYNRFSGGISPNLGNC---SSLTHLDIVGSKL-- 299 (1109)
Q Consensus 233 ~~l~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~------L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~L~~n~l-- 299 (1109)
..+..+ ++|+.|++++|.+.+..+..+..+.+ |++|++++|.+++..+..+... .+++.|.++.+.+
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 998888 88999999999999887777766655 8888888888887777666543 5677777764332
Q ss_pred -------CCcCCcccccc--ccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccEEEccCcc
Q 001275 300 -------TGSIPSSFGLL--ARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNR 370 (1109)
Q Consensus 300 -------~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 370 (1109)
.+..+..|..+ ++|+.|++++|.+++..|..|..+++|+.|+|++|++++..|..|..+++|++|+|++|+
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 22222233332 345555555555554445555555555555555555554444455555555555555555
Q ss_pred ccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCC
Q 001275 371 LTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPN 450 (1109)
Q Consensus 371 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~ 450 (1109)
+++..|..+..+++|++|++++|.+.+..+..|..+++|+.|+|++|.+++. ..+++|+.|++++|+++ .+
T Consensus 326 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l--- 396 (844)
T 3j0a_A 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TL--- 396 (844)
T ss_dssp CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CC---
T ss_pred CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-cc---
Confidence 5544444444555555555555555444444444455555555555554421 11344444444444444 22
Q ss_pred cccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCC--CCCCCCCceEEeecCccCCCCCC-ccccccc
Q 001275 451 LCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPE--FSKNPVLSHLDVSRNNISGAIPS-SIGNSIN 527 (1109)
Q Consensus 451 ~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~--~~~~~~L~~L~Ls~N~i~~~~p~-~~~~l~~ 527 (1109)
|.. ..+++.+++++|++++.... +..+++|++|+|++|++++..+. .+..+++
T Consensus 397 ---------------------~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 452 (844)
T 3j0a_A 397 ---------------------PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452 (844)
T ss_dssp ---------------------CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTT
T ss_pred ---------------------ccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCc
Confidence 222 23344455555555543221 44667777777777777754433 3455677
Q ss_pred ccEEeccCCccc-----CCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCCcccccccccce
Q 001275 528 LTSIDFSSNKFS-----GLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSI 602 (1109)
Q Consensus 528 L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 602 (1109)
|+.|+|++|+++ +..|..|..+++|++|+|++|++++..|..+..+++|+.|||++|+|++..|..+. ++|+.
T Consensus 453 L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~ 530 (844)
T 3j0a_A 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEI 530 (844)
T ss_dssp CCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCE
T ss_pred cccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccE
Confidence 777777777776 34445677788888888888888877777788888888888888888866555555 78888
Q ss_pred eccccccccCCCcchhhhhhhhhhhhcccCcCCCCCC
Q 001275 603 LKLSENHFTGGIPTFISELEKLLELQLGGNQLGGEIP 639 (1109)
Q Consensus 603 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 639 (1109)
|+|++|++++..|..+. +|+.|++++|++....+
T Consensus 531 L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 531 LDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp EEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred EECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence 88888888887777654 67788888888876544
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-51 Score=504.89 Aligned_cols=516 Identities=19% Similarity=0.175 Sum_probs=402.8
Q ss_pred cceecccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccC
Q 001275 169 LQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGD 248 (1109)
Q Consensus 169 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 248 (1109)
.+.++.++.+++ .+|..+. +++++|+|++|++++..+.+|+++++|++|+|++|++++..+.+|.++++|++|+|++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 345666666666 5666553 5788999999999888888889999999999999998888888888999999999999
Q ss_pred cccCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCC-cCCccccccccccEEEcCCCCCCCCC
Q 001275 249 NNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTG-SIPSSFGLLARLSSLDLSENQLSGKI 327 (1109)
Q Consensus 249 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~ 327 (1109)
|++++..+..|..+++|++|++++|++++..+..++++++|++|++++|.+++ .+|..|+.+++|++|++++|++++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 99888878888888889999999888887666678888888888888888886 36888888888888888888888777
Q ss_pred CCcccccccc----ceeeccCcccCCCCCccccCCCCccEEEccCccccc-cCchHHHhhcccceeeccCCccCCCCchh
Q 001275 328 PPELGKCKYL----TVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTG-EFPVSIWRIASLEYLLVYNNNLLGKLPLE 402 (1109)
Q Consensus 328 p~~l~~l~~L----~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 402 (1109)
|..++.+++| +.|++++|.+++..|..+... +|++|++++|.... .++..+..++.++.+.+.-+.+...
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~---- 240 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE---- 240 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC----
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc----
Confidence 7788888888 788888888887777666655 78888888875432 3455566666666666544332210
Q ss_pred hhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCC-cccccCCCCcccCccceEEECCCcccccCCCcccCCCCcc
Q 001275 403 MTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINN-SFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTL 481 (1109)
Q Consensus 403 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N-~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L 481 (1109)
..++ .+..+.+.+ +.. ..++.+++++| .+.+.+|..+..+++|+.|++++|++. .+|..+..+ +|
T Consensus 241 ----~~l~--~~~~~~~~~-----l~~-l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L 306 (570)
T 2z63_A 241 ----GNLE--KFDKSALEG-----LCN-LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GW 306 (570)
T ss_dssp ----SSCE--ECCTTTTGG-----GGG-SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CC
T ss_pred ----hhhh--hcchhhhcc-----ccc-cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-Cc
Confidence 0000 111111110 001 12455556555 555566666666666666666666665 456666666 67
Q ss_pred chhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCc--chhhhcccccceeeccc
Q 001275 482 WRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLM--PQELGNLVSLVTLNISL 559 (1109)
Q Consensus 482 ~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~ 559 (1109)
+.|++++|+++ .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|++++.. |..+..+++|++|++++
T Consensus 307 ~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 382 (570)
T 2z63_A 307 QHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382 (570)
T ss_dssp SEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS
T ss_pred cEEeeccCccc-ccCc-ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCC
Confidence 77777777766 3333 4677889999999998876665 77889999999999998654 78889999999999999
Q ss_pred ccccccCCccccCCCCccEEEecCccccCCCC-cccccccccceeccccccccCCCcchhhhhhhhhhhhcccCcCC-CC
Q 001275 560 NHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIP-SSLRSWKSLSILKLSENHFTGGIPTFISELEKLLELQLGGNQLG-GE 637 (1109)
Q Consensus 560 N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~-g~ 637 (1109)
|++++..+ .+..+++|+.|++++|++++..| ..+..+++|++|++++|++++..|..+..+++|+.|+|++|+++ +.
T Consensus 383 n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 383 NGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp CSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcccc
Confidence 99985444 48899999999999999997766 57889999999999999999888999999999999999999998 67
Q ss_pred CCCCchhhhhhhhhhcccccccccccCcchhhcccCCeEEccCCcccccCCC-CCccccceEEeeeccccccccch
Q 001275 638 IPPSIGALQDLSYALNLSKNGLTGRIPSDLEKLSKLEQLDISSNNLTGTLSP-LSNIHSLVEVNVSYNLFTGPVPE 712 (1109)
Q Consensus 638 ip~~~~~l~~l~~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~~~-l~~~~~l~~l~~~~n~l~g~~p~ 712 (1109)
+|..++.+++| ..|+|++|++++..|..+.++++|++|+|++|++++.+|. +..+++|+.+++++|+++|.+|.
T Consensus 462 ~p~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 462 LPDIFTELRNL-TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ECSCCTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred chhhhhcccCC-CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999 4799999999988899999999999999999999988776 88999999999999999999883
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-51 Score=501.43 Aligned_cols=497 Identities=19% Similarity=0.177 Sum_probs=367.9
Q ss_pred cCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccc
Q 001275 87 LGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRI 166 (1109)
Q Consensus 87 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l 166 (1109)
+|..+ .+++++|+|++|++++..+..|.++++|++|||++|++++..|..|+++++|++|+|++|.+++..|..+..+
T Consensus 22 ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 22 IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp CCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 45443 2578999999999998888899999999999999999998888899999999999999999997778899999
Q ss_pred cccceecccccccccccccccCCCcccceeecccccCCC-CcccccccccCccEEEeccccccCcCchhccccccc----
Q 001275 167 LGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSG-TIPESIGNCYRLQELYLNENKLMGFLPESLSNLENL---- 241 (1109)
Q Consensus 167 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L---- 241 (1109)
++|++|++++|++++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|++++..+..++.+++|
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 999999999999997666679999999999999999987 479999999999999999999998888899999888
Q ss_pred ccccccCcccCCcccccccCCCCcchhccccccccC-CCCcccccccCCcEEEeecCCCCC------cCCccccccc--c
Q 001275 242 VYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSG-GISPNLGNCSSLTHLDIVGSKLTG------SIPSSFGLLA--R 312 (1109)
Q Consensus 242 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~--~ 312 (1109)
+.|++++|.+++..+..+... +|+.|++++|.... ..+..+..+++++.+.+....+.. .....+..+. .
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 258 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence 889999999998877777665 79999998885442 234556667777776665433321 1122233332 2
Q ss_pred ccEEEcCCC-CCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeecc
Q 001275 313 LSSLDLSEN-QLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVY 391 (1109)
Q Consensus 313 L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 391 (1109)
++.+++++| .+.+.+|..+..+++|+.|++++|.++ .+|..+..+ +|++|++++|+++ .+|. ..+++|+.|+++
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~ 333 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFT 333 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEE
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCc
Confidence 345555555 455556666666666666666666665 455555555 6666666666665 3433 244555555555
Q ss_pred CCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCC
Q 001275 392 NNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPI 471 (1109)
Q Consensus 392 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~ 471 (1109)
+|.+.+..+. ..+++|+.|++++|++++.. ..|..+..+++|++|++++|++.+..
T Consensus 334 ~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~----------------------~~~~~~~~~~~L~~L~l~~n~l~~~~ 389 (570)
T 2z63_A 334 SNKGGNAFSE--VDLPSLEFLDLSRNGLSFKG----------------------CCSQSDFGTTSLKYLDLSFNGVITMS 389 (570)
T ss_dssp SCBSCCBCCC--CBCTTCCEEECCSSCCBEEE----------------------EEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred CCcccccccc--ccCCCCCEEeCcCCccCccc----------------------cccccccccCccCEEECCCCcccccc
Confidence 5555443333 44455555555555554332 00333344444555555555544333
Q ss_pred CcccCCCCccchhhccCcccCCCCC--CCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCccc-CCcchhhhc
Q 001275 472 PSLLGSCPTLWRVILKQNQLTGALP--EFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFS-GLMPQELGN 548 (1109)
Q Consensus 472 p~~~~~l~~L~~l~l~~N~l~~~~~--~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~ 548 (1109)
+. +..+++|+.|++++|++++.++ .+..+++|++|++++|++++.+|..+.++++|++|++++|+++ +.+|..++.
T Consensus 390 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 390 SN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp EE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred cc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 32 5555555555555555555544 3777888889999999888888888889999999999999987 568888899
Q ss_pred ccccceeecccccccccCCccccCCCCccEEEecCccccCCCCcccccccccceeccccccccCCCcc
Q 001275 549 LVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIPT 616 (1109)
Q Consensus 549 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 616 (1109)
+++|++|++++|++++..|..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..|.
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999999988888999999999999999999988778889999999999999999987775
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.4e-51 Score=496.23 Aligned_cols=489 Identities=19% Similarity=0.217 Sum_probs=348.1
Q ss_pred CceeeeEEecCCCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCc
Q 001275 58 PCQWVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPD 137 (1109)
Q Consensus 58 ~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 137 (1109)
.|.|.|| |+... ++++ .+|+.+. ++|++|+|++|++++..|..|+++++|++|+|++|++++..|.
T Consensus 3 ~C~~~~~-c~~~~----------~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDGRS----------RSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EECTT----------SCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EECCC----------Cccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 5999998 96533 2333 4666554 7899999999999988899999999999999999999988889
Q ss_pred cccccCccceeccccccccccCCcccccccccceeccccccccc-ccccccCCCcccceeecccccCCCCcc-ccccccc
Q 001275 138 NFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSG-SIPRNVGDLKEVEALWLFSNRLSGTIP-ESIGNCY 215 (1109)
Q Consensus 138 ~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~ 215 (1109)
.|+++++|++|+|++|.+++..|..+.++++|++|++++|++++ ..|..++++++|++|++++|++.+.+| ..|++++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999999999999999997777779999999999999999986 457789999999999999998555555 6899999
Q ss_pred CccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCCC--C-cccccccCCcEE
Q 001275 216 RLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGI--S-PNLGNCSSLTHL 292 (1109)
Q Consensus 216 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-~~~~~l~~L~~L 292 (1109)
+|++|++++|++++..|..+.++++|++|++++|.+.......+..+++|++|++++|++++.. + .....+++|+.|
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 9999999999999989999999999999999999987655544567889999999999988642 1 223457788889
Q ss_pred EeecCCCCCcCC----ccccccccccEEEcCCCCCCCCC------CCccccccccceeeccCcccCCC-----CCccccC
Q 001275 293 DIVGSKLTGSIP----SSFGLLARLSSLDLSENQLSGKI------PPELGKCKYLTVLHLYANQLEGE-----IPDELGQ 357 (1109)
Q Consensus 293 ~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~------p~~l~~l~~L~~L~L~~N~l~~~-----~p~~l~~ 357 (1109)
++++|.+++..+ ..+..+++|+.|++++|.+.+.. ...+..+.+|+.|++.++.+... ++..+..
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence 998888876443 33456678888888888776431 12234455566666666554321 0111122
Q ss_pred CCCccEEEccCccccccCchHH-HhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceE
Q 001275 358 LSNLQDLELFDNRLTGEFPVSI-WRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQL 436 (1109)
Q Consensus 358 l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L 436 (1109)
.++|+.|++++|+++ .+|..+ ..+++|++|++++|++++.+|.. +..++.+++|++|
T Consensus 309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------------~~~~~~l~~L~~L 366 (549)
T 2z81_A 309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN---------------------SACKGAWPSLQTL 366 (549)
T ss_dssp STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHH---------------------HTCTTSSTTCCEE
T ss_pred cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccc---------------------hhhhhccccCcEE
Confidence 334555555555544 344333 23455555555555544433221 1123344444445
Q ss_pred EecCCcccccCC--CCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCcc
Q 001275 437 DFINNSFTGEIP--PNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNI 514 (1109)
Q Consensus 437 ~ls~N~l~~~~p--~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i 514 (1109)
++++|++++..+ ..+..+++|++|++++|+++ .+|..++.+++|++|++++|++++....+ .++|++|++++|+|
T Consensus 367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNL 443 (549)
T ss_dssp ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCC
T ss_pred EccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchh--cCCceEEECCCCCh
Confidence 555544443211 22444455555555555554 34445555555555555555555332222 25789999999999
Q ss_pred CCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCC
Q 001275 515 SGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIP 591 (1109)
Q Consensus 515 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 591 (1109)
++.+ .++++|++|+|++|+|+ .+|. .+.+++|++|+|++|++++..|..+..+++|+.|++++|.+++..|
T Consensus 444 ~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 444 DSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 8643 57888999999999998 5665 5678999999999999998888889999999999999999987655
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.1e-51 Score=506.46 Aligned_cols=507 Identities=19% Similarity=0.256 Sum_probs=404.2
Q ss_pred ChhhHHHHHHHHHhccCCCCcccCCCCCCC---CCCceeee-EEecCC--CCcEEEEEecccCCccccCCcccCCCCccE
Q 001275 26 LNGDGVALLSLMRHWNSVPPLIISSWNSSD---STPCQWVG-IECDDD--AHNVVSFNLSSYGVSGQLGPEIGHLSKLQT 99 (1109)
Q Consensus 26 ~~~~~~all~~~~~~~~~~~~~l~sW~~~~---~~~c~w~g-v~C~~~--~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~ 99 (1109)
...+...-.++++-+..... ..|...+ +..|.|.. ..|..= ..-|++- . -.+++.
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~---~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~------------~----~~~V~~ 85 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNG---KNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLN------------S----NGRVTG 85 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTG---GGCCCCC------CCCCCSSCGGGTTCCTTEEEC------------T----TCCEEE
T ss_pred hhhHHHHHHHHHHHHHHcCC---CCcccCCcCCccCCCCCCCCCcccccCCCCeEEc------------C----CCCEEE
Confidence 34444566777777755432 4787433 22357952 222211 1235440 0 047889
Q ss_pred eecCCCcccccCCCCCCCCCCCcEeeccCccc------cC------CCCccccccCccceeccccccccccCCcccccc-
Q 001275 100 IDLSSNNFSGNIPPKLGNCSALEYLDLSTNGF------TG------DIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRI- 166 (1109)
Q Consensus 100 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l------~~------~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l- 166 (1109)
|+|++|+++|.+|+++++|++|++|||++|.+ .+ .+|... +.+|+ ++++.|.+.+.+|..+..+
T Consensus 86 L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~ 162 (636)
T 4eco_A 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLI 162 (636)
T ss_dssp EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHH
T ss_pred EEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHH
Confidence 99999999999999999999999999999977 22 344433 56777 8888888888777777643
Q ss_pred cccceecccccccccccccccCCCcccceeecc--cccCCCCcccccccccCccEEEeccccccCc--------------
Q 001275 167 LGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLF--SNRLSGTIPESIGNCYRLQELYLNENKLMGF-------------- 230 (1109)
Q Consensus 167 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~--~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-------------- 230 (1109)
.++..+++....+.. .....++.+.+. .|++++ +|..|+++++|++|+|++|++++.
T Consensus 163 ~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 163 KDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp HHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 345555555433331 112234444443 689998 999999999999999999999986
Q ss_pred ---Cchhcc--cccccccccccCcccCCcccccccCCCCcchhcccccc-ccC-CCCcccccc------cCCcEEEeecC
Q 001275 231 ---LPESLS--NLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNR-FSG-GISPNLGNC------SSLTHLDIVGS 297 (1109)
Q Consensus 231 ---~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l------~~L~~L~L~~n 297 (1109)
+|+.++ ++++|++|+|++|++.+.+|..+..+++|++|+|++|+ +++ .+|..++.+ ++|++|++++|
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 899999 99999999999999999999999999999999999998 998 889888876 99999999999
Q ss_pred CCCCcCCc--cccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCC-ccEEEccCcccccc
Q 001275 298 KLTGSIPS--SFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSN-LQDLELFDNRLTGE 374 (1109)
Q Consensus 298 ~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~ 374 (1109)
+++ .+|. .++.+++|++|++++|+++|.+| .++.+++|++|++++|+++ .+|..+..+++ |++|++++|+++ .
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-c
Confidence 999 7888 99999999999999999999999 9999999999999999999 88999999999 999999999999 7
Q ss_pred CchHHHhhc--ccceeeccCCccCCCCchhhh-------ccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccc
Q 001275 375 FPVSIWRIA--SLEYLLVYNNNLLGKLPLEMT-------ELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTG 445 (1109)
Q Consensus 375 ~~~~~~~l~--~L~~L~l~~N~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~ 445 (1109)
+|..+..+. +|++|++++|.+++.+|..+. .+++|+.|++++|++++..+..+..+++|++|++++|.++
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~- 470 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT- 470 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-
Confidence 888877655 899999999999999999888 8889999999999999544444556899999999999999
Q ss_pred cCCCCcccCc--------cceEEECCCcccccCCCcccC--CCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccC
Q 001275 446 EIPPNLCFGK--------QLRVLNMGQNQFHGPIPSLLG--SCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNIS 515 (1109)
Q Consensus 446 ~~p~~~~~~~--------~L~~L~L~~N~l~~~~p~~~~--~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~ 515 (1109)
.+|..+.... +|++|+|++|+++ .+|..+. .+++|+.|++++|++++.+..+..+++|++|+|++|+
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~-- 547 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR-- 547 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCB--
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCc--
Confidence 6776655433 9999999999999 6787776 6666666555555555532235555555555555554
Q ss_pred CCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccC
Q 001275 516 GAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNG 588 (1109)
Q Consensus 516 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 588 (1109)
++++|++.+.+|..++++++|++|+|++|++ +.+|..+. ++|+.|||++|++..
T Consensus 548 ----------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 548 ----------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp ----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred ----------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 3478999999999999999999999999999 58898877 899999999998874
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-49 Score=484.56 Aligned_cols=484 Identities=20% Similarity=0.195 Sum_probs=371.3
Q ss_pred eecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceeccccccc
Q 001275 100 IDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSL 179 (1109)
Q Consensus 100 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 179 (1109)
.|.+++.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|++++|++
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 467788887 6777664 7899999999999988888999999999999999999988888899999999999999999
Q ss_pred ccccccccCCCcccceeecccccCCC-CcccccccccCccEEEeccccc-cCcCchhcccccccccccccCcccCCcccc
Q 001275 180 SGSIPRNVGDLKEVEALWLFSNRLSG-TIPESIGNCYRLQELYLNENKL-MGFLPESLSNLENLVYLDVGDNNLEGRINF 257 (1109)
Q Consensus 180 ~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 257 (1109)
++..|..|+++++|++|++++|++++ ..|..++++++|++|++++|++ +...+..|.++++|++|++++|++++..+.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 98888889999999999999999986 3577888999999999999984 444446788888888888888888887777
Q ss_pred cccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcC--C-ccccccccccEEEcCCCCCCCCCC----Cc
Q 001275 258 GSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSI--P-SSFGLLARLSSLDLSENQLSGKIP----PE 330 (1109)
Q Consensus 258 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~~~l~~L~~L~Ls~N~l~~~~p----~~ 330 (1109)
.+..+++|++|+++.|.+.......+..+++|++|++++|++++.. | .....+++|+.|++++|.+++..+ ..
T Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 7888888888888888776332222345777777777777777542 1 223345667777777776654322 23
Q ss_pred cccccccceeeccCcccCCCC------CccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhh
Q 001275 331 LGKCKYLTVLHLYANQLEGEI------PDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMT 404 (1109)
Q Consensus 331 l~~l~~L~~L~L~~N~l~~~~------p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 404 (1109)
+..+++|+.+++++|.+.+.. ...+..+++|+.|++.++.+.... ....++..+.
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-------------------~~~~l~~~~~ 307 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY-------------------LFYDLSTVYS 307 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG-------------------GSCCCCHHHH
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh-------------------hcccchhhhh
Confidence 345566666666666665421 112334455555555555443210 0011233344
Q ss_pred ccCCCCeEEccCCcCcccCCccc-cCCCCCceEEecCCcccccCC---CCcccCccceEEECCCcccccCCC--cccCCC
Q 001275 405 ELKQLKNISLYNNQFSGVIPQSL-GINSSLMQLDFINNSFTGEIP---PNLCFGKQLRVLNMGQNQFHGPIP--SLLGSC 478 (1109)
Q Consensus 405 ~l~~L~~L~L~~N~l~~~~p~~~-~~~~~L~~L~ls~N~l~~~~p---~~~~~~~~L~~L~L~~N~l~~~~p--~~~~~l 478 (1109)
...+|+.|++++|+++ .+|..+ ..+++|++|++++|.+++.+| ..+..+++|++|++++|++++..+ ..+..+
T Consensus 308 ~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386 (549)
T ss_dssp HSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC
T ss_pred hcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC
Confidence 4567778888888776 556555 467788888888888887664 346778999999999999986543 568899
Q ss_pred CccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecc
Q 001275 479 PTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNIS 558 (1109)
Q Consensus 479 ~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 558 (1109)
++|+.|++++|++++.++.+..+++|++|++++|+|+ .+|..+. ++|++|+|++|++++.+ +.+++|++|+|+
T Consensus 387 ~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls 459 (549)
T 2z81_A 387 KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYIS 459 (549)
T ss_dssp TTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred CCCCEEECCCCCCccCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEECC
Confidence 9999999999999976666899999999999999998 4555543 68999999999999753 578999999999
Q ss_pred cccccccCCccccCCCCccEEEecCccccCCCCcccccccccceeccccccccCCCc
Q 001275 559 LNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIP 615 (1109)
Q Consensus 559 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 615 (1109)
+|+|+ .+|. ...+++|++|||++|+|++..|..+..+++|+.|++++|++++..|
T Consensus 460 ~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 460 RNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 99999 6776 5679999999999999999888899999999999999999998776
No 18
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=4.8e-50 Score=449.92 Aligned_cols=265 Identities=25% Similarity=0.391 Sum_probs=204.4
Q ss_pred hCCCCCceeecccCeEEEEEEeC------CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCcee
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG------PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGI 892 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 892 (1109)
++|...++||+|+||+||+|++. +++.||||++.. ......++|.+|++++++++|||||+++|+|.+.+..+
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~-~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 119 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKE-ASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL 119 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESC-CSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECc-CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence 45667789999999999999764 478899999853 34445678999999999999999999999999999999
Q ss_pred EEEEeccCCCHHHHHhccCC------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCc
Q 001275 893 IMYRYMENGSLRDVLHSITP------------PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEME 960 (1109)
Q Consensus 893 lv~e~~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~ 960 (1109)
+|||||++|+|.++++.... ...++|.+++.++.|||+||+||| +++||||||||+|||+++++.
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTE
T ss_pred EEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCCCc
Confidence 99999999999999986532 245899999999999999999999 889999999999999999999
Q ss_pred EEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHH
Q 001275 961 PHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVR 1039 (1109)
Q Consensus 961 ~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~ 1039 (1109)
+||+|||+|+...............||+.|||||++.+..|+.++|||||||++|||+| |+.||..... .++...+.
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~--~~~~~~i~ 274 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN--TEAIDCIT 274 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH--HHHHHHHH
T ss_pred EEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCH--HHHHHHHH
Confidence 99999999997755444444445689999999999999999999999999999999999 8999864321 12222221
Q ss_pred HhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCCCCCCCC
Q 001275 1040 SVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASVPMTSKY 1108 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~~ 1108 (1109)
. .. .. . . ......++.+++.+||+.||++||||+||+++|+.+. +.++.|
T Consensus 275 ~---g~-~~-~--~-----------p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~-~~pp~~ 324 (329)
T 4aoj_A 275 Q---GR-EL-E--R-----------PRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALA-QAPPVY 324 (329)
T ss_dssp H---TC-CC-C--C-----------CTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHH-HSCC--
T ss_pred c---CC-CC-C--C-----------cccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHh-hCCccc
Confidence 1 10 00 0 0 1112345677888999999999999999999999873 334444
No 19
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=3.9e-50 Score=446.32 Aligned_cols=258 Identities=23% Similarity=0.320 Sum_probs=210.6
Q ss_pred CCCCCceeecccCeEEEEEEeC------CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeE
Q 001275 820 NLNAKHVIGRGAHGIVYKASLG------PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 820 ~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 893 (1109)
+++..++||+|+||+||+|.+. +++.||||++.........++|.+|+.++++++|||||+++|+|.+.+..++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence 4556788999999999999763 5688999999766555667789999999999999999999999999999999
Q ss_pred EEEeccCCCHHHHHhccCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCc
Q 001275 894 MYRYMENGSLRDVLHSITP-------------PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEME 960 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~ 960 (1109)
|||||++|+|.++++.... ...++|..+++++.|||+||+||| +.+||||||||+|||+++++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGC
T ss_pred EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCCCC
Confidence 9999999999999975432 235899999999999999999999 889999999999999999999
Q ss_pred EEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHH
Q 001275 961 PHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVR 1039 (1109)
Q Consensus 961 ~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~ 1039 (1109)
+||+|||+|+...............||++|||||++.++.|+.++|||||||++|||+| |+.||.... ..++...+.
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~--~~~~~~~i~ 261 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS--NQDVVEMIR 261 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC--HHHHHHHHH
T ss_pred EEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC--HHHHHHHHH
Confidence 99999999987654433333345689999999999999999999999999999999999 889986532 122222221
Q ss_pred HhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1040 SVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
. .. .. . ....+..++.+++.+||+.||++||||+||+++|+..
T Consensus 262 ~---~~-~~-~-------------~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 262 N---RQ-VL-P-------------CPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp T---TC-CC-C-------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred c---CC-CC-C-------------CcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 1 10 00 0 0112234577788999999999999999999999865
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.8e-49 Score=493.74 Aligned_cols=365 Identities=23% Similarity=0.335 Sum_probs=256.5
Q ss_pred CCCCCcCCccccccccccEEEcCCCCCCC-----------------CCCCccc--cccccceeeccCcccCCCCCccccC
Q 001275 297 SKLTGSIPSSFGLLARLSSLDLSENQLSG-----------------KIPPELG--KCKYLTVLHLYANQLEGEIPDELGQ 357 (1109)
Q Consensus 297 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~l~--~l~~L~~L~L~~N~l~~~~p~~l~~ 357 (1109)
|++++ +|..|+.+++|+.|+|++|++++ .+|+.++ ++++|++|+|++|.+.+.+|..+++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 66665 66667777777777777777765 4788877 8888888888888888888888888
Q ss_pred CCCccEEEccCcc-ccc-cCchHHHhhc-------ccceeeccCCccCCCCch--hhhccCCCCeEEccCCcCcccCCcc
Q 001275 358 LSNLQDLELFDNR-LTG-EFPVSIWRIA-------SLEYLLVYNNNLLGKLPL--EMTELKQLKNISLYNNQFSGVIPQS 426 (1109)
Q Consensus 358 l~~L~~L~L~~N~-l~~-~~~~~~~~l~-------~L~~L~l~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~ 426 (1109)
+++|++|+|++|+ +++ .+|..+..++ +|++|++++|+++ .+|. .+.++++|+.|+|++|+++ .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 8888888888887 887 7888888776 7888888888777 6666 7777777777777777777 666 6
Q ss_pred ccCCCCCceEEecCCcccccCCCCcccCcc-ceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCc
Q 001275 427 LGINSSLMQLDFINNSFTGEIPPNLCFGKQ-LRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLS 505 (1109)
Q Consensus 427 ~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~-L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~ 505 (1109)
++.+++|++|++++|.++ .+|..+..+++ |+.|+|++|+++ .+|..+..++. ++|+
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~---------------------~~L~ 647 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV---------------------YVMG 647 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS---------------------SCEE
T ss_pred hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc---------------------CCCC
Confidence 777777777777777777 66766777666 777777777776 55555444322 2255
Q ss_pred eEEeecCccCCCCCCc---cc--ccccccEEeccCCcccCCcchhh-hcccccceeecccccccccCCccccC-------
Q 001275 506 HLDVSRNNISGAIPSS---IG--NSINLTSIDFSSNKFSGLMPQEL-GNLVSLVTLNISLNHVEGSLPSQLSK------- 572 (1109)
Q Consensus 506 ~L~Ls~N~i~~~~p~~---~~--~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~------- 572 (1109)
+|++++|++++.+|.. ++ .+.+|+.|+|++|+++ .+|..+ ..+++|+.|+|++|+|+ .+|..+..
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYK 725 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCT
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccc
Confidence 5555555555444322 22 2235666777777666 344443 35667777777777766 45544332
Q ss_pred -CCCccEEEecCccccCCCCcccc--cccccceeccccccccCCCcchhhhhhhhhhhhcccCcCCCCCCCCchhhhhhh
Q 001275 573 -CKNLEVFDVSFNLLNGSIPSSLR--SWKSLSILKLSENHFTGGIPTFISELEKLLELQLGGNQLGGEIPPSIGALQDLS 649 (1109)
Q Consensus 573 -l~~L~~L~ls~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~l~~l~ 649 (1109)
|++|+.|+|++|+|+ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++|+
T Consensus 726 nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~---------------- 787 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR---------------- 787 (876)
T ss_dssp TGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----------------
T ss_pred ccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----------------
Confidence 237778888888777 6777776 77788888888888775 67777777788888877776
Q ss_pred hhhcccccccccccCcchhhcccCCeEEccCCcccccCCC-CCccccceEEeeeccccccccchhh
Q 001275 650 YALNLSKNGLTGRIPSDLEKLSKLEQLDISSNNLTGTLSP-LSNIHSLVEVNVSYNLFTGPVPETL 714 (1109)
Q Consensus 650 ~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~~~-l~~~~~l~~l~~~~n~l~g~~p~~~ 714 (1109)
++++|++++.+|..++++++|+.|+|++|+| +.+|. +. ++|+.|++++|++...-+..+
T Consensus 788 ---~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 788 ---DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp ---CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred ---CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 4567777777777777777777777777777 56666 43 577777777777765444433
No 21
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=2e-50 Score=446.61 Aligned_cols=258 Identities=25% Similarity=0.395 Sum_probs=209.0
Q ss_pred hCCCCCceeecccCeEEEEEEeC------CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCcee
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG------PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGI 892 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 892 (1109)
++|...+.||+|+||+||+|++. +++.||||++.. ......++|.+|++++++++|||||+++|+|.+++..+
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~-~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 91 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKD-ASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI 91 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECS-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCC-CChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEE
Confidence 46778899999999999999763 478899999853 33445678999999999999999999999999999999
Q ss_pred EEEEeccCCCHHHHHhccC----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEE
Q 001275 893 IMYRYMENGSLRDVLHSIT----------PPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPH 962 (1109)
Q Consensus 893 lv~e~~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~k 962 (1109)
+|||||++|+|.++++..+ ....++|..++.++.|||+||+||| +++||||||||+|||+++++.+|
T Consensus 92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEE
T ss_pred EEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCCcEE
Confidence 9999999999999997643 2356999999999999999999999 88999999999999999999999
Q ss_pred EecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHh
Q 001275 963 ISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSV 1041 (1109)
Q Consensus 963 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~ 1041 (1109)
|+|||+|+...............||++|||||++.+..|+.++|||||||++|||+| |+.||..... .++...+..
T Consensus 169 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~--~~~~~~i~~- 245 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN--NEVIECITQ- 245 (299)
T ss_dssp ECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH--HHHHHHHHH-
T ss_pred ECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHc-
Confidence 999999987654433333334579999999999999999999999999999999999 8999865321 122222211
Q ss_pred hcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1042 WSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1042 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
... . . .......++.+++.+||+.||++||||+|+++.|+++
T Consensus 246 --~~~-~-~-------------~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~ 287 (299)
T 4asz_A 246 --GRV-L-Q-------------RPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNL 287 (299)
T ss_dssp --TCC-C-C-------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred --CCC-C-C-------------CCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 100 0 0 0112234567788899999999999999999999876
No 22
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-49 Score=438.85 Aligned_cols=260 Identities=26% Similarity=0.362 Sum_probs=199.7
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
+++...++||+|+||+||+|++.+ .||||+++... .....+.|.+|++++++++|||||+++|++.+ +..++||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy 112 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQW 112 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEc
Confidence 467778999999999999998763 58999885432 23345679999999999999999999999864 568999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
|++|+|.++++... ..++|..+..|+.|||+||+||| +++||||||||+|||+++++.+||+|||+|+.......
T Consensus 113 ~~gGsL~~~l~~~~--~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~ 187 (307)
T 3omv_A 113 CEGSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp CSSCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------
T ss_pred CCCCCHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEEeeccCceecccCCc
Confidence 99999999997643 35999999999999999999999 88999999999999999999999999999987754443
Q ss_pred CceeeecccCccccccccccc---CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 978 STTSISVVGTIGYIAPENAFT---TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
.......+||+.|||||++.+ +.|+.++|||||||++|||+||+.||...... ..+...+..... .+
T Consensus 188 ~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~-~~~~~~~~~~~~---------~p 257 (307)
T 3omv_A 188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR-DQIIFMVGRGYA---------SP 257 (307)
T ss_dssp ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH-HHHHHHHHTTCC---------CC
T ss_pred ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChH-HHHHHHHhcCCC---------CC
Confidence 334445689999999999864 46899999999999999999999999643211 111111111100 11
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCC
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDAS 1101 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 1101 (1109)
... ........++.+++.+||+.||++||||+||+++|+.+.
T Consensus 258 ~~~-----~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 258 DLS-----KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp CST-----TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred Ccc-----cccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence 000 001122345677888999999999999999999987653
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-48 Score=472.23 Aligned_cols=459 Identities=20% Similarity=0.192 Sum_probs=210.8
Q ss_pred ceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccc
Q 001275 146 QYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNEN 225 (1109)
Q Consensus 146 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 225 (1109)
++||+++|.++ .+|..+. ++|++|++++|++++..|..|+++++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 35666666665 4555444 45555555555555544455555555555555555555444555555555555555555
Q ss_pred cccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCc
Q 001275 226 KLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPS 305 (1109)
Q Consensus 226 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (1109)
++++ +|.. .+++|++|++++|++++. .+|..|+++++|++|++++|++++ .
T Consensus 80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~-----------------------~~p~~~~~l~~L~~L~L~~n~l~~---~ 130 (520)
T 2z7x_B 80 KLVK-ISCH--PTVNLKHLDLSFNAFDAL-----------------------PICKEFGNMSQLKFLGLSTTHLEK---S 130 (520)
T ss_dssp CCCE-EECC--CCCCCSEEECCSSCCSSC-----------------------CCCGGGGGCTTCCEEEEEESSCCG---G
T ss_pred ceee-cCcc--ccCCccEEeccCCccccc-----------------------cchhhhccCCcceEEEecCcccch---h
Confidence 5542 2222 444444444444444431 233444444444444444444443 2
Q ss_pred cccccccc--cEEEcCCCCC--CCCCCCcccccc-ccceeeccCcccCCCCCc-cccCCCCccEEEccCcc-------cc
Q 001275 306 SFGLLARL--SSLDLSENQL--SGKIPPELGKCK-YLTVLHLYANQLEGEIPD-ELGQLSNLQDLELFDNR-------LT 372 (1109)
Q Consensus 306 ~~~~l~~L--~~L~Ls~N~l--~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~-------l~ 372 (1109)
.++.+++| +.|++++|.+ .+..|..+..+. ....+++++|++.+.++. .+..+++|+.|++++|. +.
T Consensus 131 ~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceee
Confidence 23334444 4444444444 344444444333 122334444444433322 23334444444444443 22
Q ss_pred ccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCc-
Q 001275 373 GEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNL- 451 (1109)
Q Consensus 373 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~- 451 (1109)
+.+| .+..+++|+.|++++|.+++..+..+.. .+ ..++|++|++++|.++|.+|..+
T Consensus 211 ~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~--------------------~~-~~~~L~~L~l~~n~l~~~~p~~~~ 268 (520)
T 2z7x_B 211 SILA-KLQTNPKLSNLTLNNIETTWNSFIRILQ--------------------LV-WHTTVWYFSISNVKLQGQLDFRDF 268 (520)
T ss_dssp HHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHH--------------------HH-HTSSCSEEEEEEEEEESCCCCCCC
T ss_pred cchh-hhccccchhhccccccccCHHHHHHHHH--------------------Hh-hhCcccEEEeecccccCccccchh
Confidence 2222 2333333333333333332211111100 00 01234444444444444444443
Q ss_pred ----ccCccceEEECCCcccccCCC-cccCCC---CccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCccc
Q 001275 452 ----CFGKQLRVLNMGQNQFHGPIP-SLLGSC---PTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIG 523 (1109)
Q Consensus 452 ----~~~~~L~~L~L~~N~l~~~~p-~~~~~l---~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~ 523 (1109)
..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|++... +.+..+++|++|++++|++++.+|..++
T Consensus 269 ~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 345 (520)
T 2z7x_B 269 DYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-LCPSKISPFLHLDFSNNLLTDTVFENCG 345 (520)
T ss_dssp CCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-CCCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred hcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-cchhhCCcccEEEeECCccChhhhhhhc
Confidence 4444555555555544 222 121111 1222222222222211 1113444555555555555555555555
Q ss_pred ccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCCcc-cccccccce
Q 001275 524 NSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSS-LRSWKSLSI 602 (1109)
Q Consensus 524 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~ 602 (1109)
++++|++|++++|++++.. .+|..++.+++|++||+++|++++.+|.. +..+++|+.
T Consensus 346 ~l~~L~~L~L~~N~l~~l~----------------------~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELS----------------------KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCSSCCEEECCSSCCCBHH----------------------HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred cCCCCCEEEccCCccCccc----------------------cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 5555555555555555310 23334444455555555555555434432 444555555
Q ss_pred eccccccccCCCcchhhhhhhhhhhhcccCcCCCCCCCCchhhhhhhhhhcccccccccccCcchhhcccCCeEEccCCc
Q 001275 603 LKLSENHFTGGIPTFISELEKLLELQLGGNQLGGEIPPSIGALQDLSYALNLSKNGLTGRIPSDLEKLSKLEQLDISSNN 682 (1109)
Q Consensus 603 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~l~~l~~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 682 (1109)
|++++|++++.+|..+. ++|+ .|+|++|+++ .+|..+.++++|++|||++|+
T Consensus 404 L~Ls~N~l~~~~~~~l~--~~L~-------------------------~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLP--PRIK-------------------------VLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp EECCSSCCCGGGGGSCC--TTCC-------------------------EEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred EECcCCCCCcchhhhhc--ccCC-------------------------EEECCCCccc-ccchhhhcCCCCCEEECCCCc
Confidence 55555555544444321 2333 3444444444 555556666677777777777
Q ss_pred ccccCCC-CCccccceEEeeeccccccccc
Q 001275 683 LTGTLSP-LSNIHSLVEVNVSYNLFTGPVP 711 (1109)
Q Consensus 683 l~g~~~~-l~~~~~l~~l~~~~n~l~g~~p 711 (1109)
|++.++. +..+++|+.|++++|++++..+
T Consensus 456 l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 456 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 7743333 6667777777777777777665
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.4e-47 Score=474.78 Aligned_cols=551 Identities=21% Similarity=0.166 Sum_probs=363.7
Q ss_pred CcccCCCCCCCCCCceeeeEEecCCCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEe
Q 001275 45 PLIISSWNSSDSTPCQWVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYL 124 (1109)
Q Consensus 45 ~~~l~sW~~~~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 124 (1109)
...+++|+.+. |..|..+.|......| +.++.+++ .+|+.+- +.+++|||++|+|++..|.+|+++++|++|
T Consensus 10 ~~~~~~~~~~~--p~~~~~c~~~~~~~~~---~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L 81 (635)
T 4g8a_A 10 DDKLAAANSSI--PESWEPCVEVVPNITY---QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVL 81 (635)
T ss_dssp -----------------CCSEEEETTTEE---ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cchhhcccCCC--CCCCCCccccCCCCEE---ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEE
Confidence 34566776543 3556666665433322 44555554 3565442 478999999999998888899999999999
Q ss_pred eccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeecccccCC
Q 001275 125 DLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLS 204 (1109)
Q Consensus 125 ~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 204 (1109)
||++|+|++..|.+|.+|++|++|+|++|+|++..+..+.++++|++|+|++|++++..+..|+++++|++|+|++|+++
T Consensus 82 ~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 82 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence 99999999888889999999999999999999666677899999999999999999877788999999999999999998
Q ss_pred C-CcccccccccCccEEEeccccccCcCchhcccccccc----cccccCcccCCcccccccCCCCcchhccccccccCC-
Q 001275 205 G-TIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLV----YLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGG- 278 (1109)
Q Consensus 205 ~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~- 278 (1109)
+ .+|..++.+++|++|+|++|++++..+..|..+++++ .++++.|.++...+..+ ....++.+++++|.....
T Consensus 162 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~ 240 (635)
T 4g8a_A 162 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNV 240 (635)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHH
T ss_pred cCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccc
Confidence 6 4688899999999999999999999898888877665 46788888886555444 344567788887765532
Q ss_pred CCcccccccCCcEEEeecCCC------CCcCCccccccccccEEEcCCCCCCC---CCCCccccccccceeeccCcccCC
Q 001275 279 ISPNLGNCSSLTHLDIVGSKL------TGSIPSSFGLLARLSSLDLSENQLSG---KIPPELGKCKYLTVLHLYANQLEG 349 (1109)
Q Consensus 279 ~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~p~~l~~l~~L~~L~L~~N~l~~ 349 (1109)
.+..+..+..++...+..+.. .......+..+..+..+++..+.... ..+..+..+.+++.+++.+|.+..
T Consensus 241 ~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 320 (635)
T 4g8a_A 241 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER 320 (635)
T ss_dssp HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE
T ss_pred cchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc
Confidence 234456666777666654332 22333445555666666655544321 233455666677777777777664
Q ss_pred CCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcc--cCCccc
Q 001275 350 EIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSG--VIPQSL 427 (1109)
Q Consensus 350 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~ 427 (1109)
. ..+....+|+.|++.+|.+.+..+ ..+..|+.+++++|.+... .....+++|+.|++++|.+.. ..+..+
T Consensus 321 ~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 393 (635)
T 4g8a_A 321 V--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSD 393 (635)
T ss_dssp C--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHH
T ss_pred c--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccch
Confidence 3 234556677777777777764332 2345667777777766532 233456777777777777643 344455
Q ss_pred cCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCC-cccCCCCccchhhccCcccCCCCCC-CCCCCCCc
Q 001275 428 GINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIP-SLLGSCPTLWRVILKQNQLTGALPE-FSKNPVLS 505 (1109)
Q Consensus 428 ~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~L~ 505 (1109)
....+|++|+++.|.+.. .+..+..+.+|+.+++++|++....+ ..+..+++++.++++.|++++..+. +..++.|+
T Consensus 394 ~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~ 472 (635)
T 4g8a_A 394 FGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 472 (635)
T ss_dssp HSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred hhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhh
Confidence 566677777777776663 34455666677777777666554333 3455566666666666666655554 55556666
Q ss_pred eEEeecCcc-CCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCc
Q 001275 506 HLDVSRNNI-SGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFN 584 (1109)
Q Consensus 506 ~L~Ls~N~i-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 584 (1109)
.|++++|++ .+.+|..|..+++|++|||++|+|++..|..|+++++|++|+|++|+|++..|..|..+++|++|||++|
T Consensus 473 ~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred hhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC
Confidence 666666653 2345556666666666666666666665666666666666666666666555556666666666666666
Q ss_pred cccCCCCcccccc-cccceeccccccccC
Q 001275 585 LLNGSIPSSLRSW-KSLSILKLSENHFTG 612 (1109)
Q Consensus 585 ~l~~~~p~~~~~l-~~L~~L~L~~N~l~~ 612 (1109)
+|++..|..+..+ ++|+.|+|++|+++.
T Consensus 553 ~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 553 HIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred cCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 6666666666555 456666666666654
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.2e-48 Score=469.30 Aligned_cols=451 Identities=20% Similarity=0.210 Sum_probs=306.4
Q ss_pred cEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeecccc
Q 001275 122 EYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSN 201 (1109)
Q Consensus 122 ~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N 201 (1109)
++||+++|+++ .+|..+. ++|++|+|++|.+++..|..+.++++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 58999999999 5888776 89999999999999877789999999999999999999988999999999999999999
Q ss_pred cCCCCcccccccccCccEEEeccccccC-cCchhcccccccccccccCcccCCcccccccCCCCc--chhccccccccCC
Q 001275 202 RLSGTIPESIGNCYRLQELYLNENKLMG-FLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNL--TFLDLSYNRFSGG 278 (1109)
Q Consensus 202 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~Ls~N~l~~~ 278 (1109)
+++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|++++|++++ ..+..+++| ++|++++|.+.+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~- 152 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG- 152 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT-
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc-
Confidence 999 56766 89999999999999998 468999999999999999998875 233344444 555555554400
Q ss_pred CCcccccccCCcEEEeecCCCCCcCCccccccc-cccEEEcCCCCCCCCCCC-ccccccccceeeccCcc-------cCC
Q 001275 279 ISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLA-RLSSLDLSENQLSGKIPP-ELGKCKYLTVLHLYANQ-------LEG 349 (1109)
Q Consensus 279 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~-------l~~ 349 (1109)
++..|..+..+. +...+++++|++.+.++. .+.++++|+.|++++|. +.+
T Consensus 153 ---------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 153 ---------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp ---------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred ---------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence 444444444433 233456667766654443 56677778888888776 555
Q ss_pred CCCccccCCCCccEEEccCccccccCchHHH---hhcccceeeccCCccCCCCchhh-----hccCCCCeEEccCCcCcc
Q 001275 350 EIPDELGQLSNLQDLELFDNRLTGEFPVSIW---RIASLEYLLVYNNNLLGKLPLEM-----TELKQLKNISLYNNQFSG 421 (1109)
Q Consensus 350 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~ 421 (1109)
.+| .++.+++|+.|++++|.+++..+..+. ..++|++|++++|+++|.+|..+ ..+++|+.+++++|.+
T Consensus 212 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-- 288 (520)
T 2z7x_B 212 ILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-- 288 (520)
T ss_dssp HHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred chh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence 555 678888888888888888764443332 24578888888888888888877 7788888888888888
Q ss_pred cCC-ccccCC---CCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCC--CC
Q 001275 422 VIP-QSLGIN---SSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTG--AL 495 (1109)
Q Consensus 422 ~~p-~~~~~~---~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~--~~ 495 (1109)
.+| ..++.. .+|++|++++|.+.... ....+++|++|++++|++++.+|..++.+++|+.|++++|++++ .+
T Consensus 289 ~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 366 (520)
T 2z7x_B 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366 (520)
T ss_dssp CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH
T ss_pred ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc
Confidence 445 444433 56888888888776322 11456677777777777776666666666555555555555554 22
Q ss_pred CC-CCCCCCCceEEeecCccCCCCCC-cccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCC
Q 001275 496 PE-FSKNPVLSHLDVSRNNISGAIPS-SIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKC 573 (1109)
Q Consensus 496 ~~-~~~~~~L~~L~Ls~N~i~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 573 (1109)
|. +..+++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|++|+|++|+|+ .+|..+..+
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l 443 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKL 443 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGC
T ss_pred hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcC
Confidence 22 45555555555555555543333 244555555555555555544444433 44555555555555 445444455
Q ss_pred CCccEEEecCccccCCCCcc-cccccccceeccccccccC
Q 001275 574 KNLEVFDVSFNLLNGSIPSS-LRSWKSLSILKLSENHFTG 612 (1109)
Q Consensus 574 ~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~ 612 (1109)
++|++|++++|+|+ .+|.. +..+++|+.|++++|++++
T Consensus 444 ~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 444 EALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 55555555555555 33332 4445555555555555544
No 26
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=3.8e-47 Score=425.07 Aligned_cols=252 Identities=23% Similarity=0.361 Sum_probs=206.1
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
+.|+..++||+|+||+||+|+.. +|+.||||++... .......+.+|++++++++|||||++++++.+++..|+||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~-~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 152 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLR-KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 152 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGG-GCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecC-chhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeC
Confidence 46888899999999999999764 6899999999544 334456788999999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
|++|+|.++++.. .+++..+..++.||+.||+||| +.+||||||||+|||++.++.+||+|||+|+.+.....
T Consensus 153 ~~gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~ 225 (346)
T 4fih_A 153 LEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP 225 (346)
T ss_dssp CTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC
T ss_pred CCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCC
Confidence 9999999999763 3899999999999999999999 89999999999999999999999999999997754322
Q ss_pred CceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchhhh
Q 001275 978 STTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLM 1057 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 1057 (1109)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......+...... ...
T Consensus 226 --~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~~~~--~~~-------- 291 (346)
T 4fih_A 226 --RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNLPP--RLK-------- 291 (346)
T ss_dssp --CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSSCC--CCS--------
T ss_pred --cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcCCCC--CCC--------
Confidence 22346899999999999999999999999999999999999999964321 1111111111000 000
Q ss_pred HHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1058 EEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1058 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.......++.+++.+||+.||++|||++|+++|=+
T Consensus 292 ------~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~ 326 (346)
T 4fih_A 292 ------NLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPF 326 (346)
T ss_dssp ------CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGG
T ss_pred ------ccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHh
Confidence 00111234566778999999999999999999744
No 27
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=4.4e-48 Score=437.31 Aligned_cols=266 Identities=22% Similarity=0.301 Sum_probs=213.3
Q ss_pred HHHHHhhCCCCCceeecccCeEEEEEEeCC------CcEEEEEEeeecccccChHHHHHHHHHHhcCCC-CceeeEeeEE
Q 001275 813 QVIEATENLNAKHVIGRGAHGIVYKASLGP------NAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRH-RNLVRLEDFW 885 (1109)
Q Consensus 813 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~ 885 (1109)
+.....++|++.++||+|+||+||+|.+.. ++.||||++.........++|.+|++++.+++| ||||+++|+|
T Consensus 58 ~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~ 137 (353)
T 4ase_A 58 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGAC 137 (353)
T ss_dssp HHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEE
Confidence 333345788999999999999999997542 367999999655555556789999999999965 8999999999
Q ss_pred ecC-CceeEEEEeccCCCHHHHHhccCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCC
Q 001275 886 LRK-DCGIIMYRYMENGSLRDVLHSITP-------------PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPE 951 (1109)
Q Consensus 886 ~~~-~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~ 951 (1109)
.+. +..++|||||++|+|.++++.... ...++|..++.++.|||+||+||| +++||||||||+
T Consensus 138 ~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDLK~~ 214 (353)
T 4ase_A 138 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAAR 214 (353)
T ss_dssp CCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGG
T ss_pred EecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCccCcc
Confidence 764 568999999999999999976421 345899999999999999999999 899999999999
Q ss_pred CeeeCCCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccc
Q 001275 952 NILLDSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKE 1030 (1109)
Q Consensus 952 NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~ 1030 (1109)
|||+++++.+||+|||+|+.+.............||+.|||||++.+..|+.++|||||||++|||+| |+.||.....
T Consensus 215 NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~- 293 (353)
T 4ase_A 215 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI- 293 (353)
T ss_dssp GEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-
T ss_pred ceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCH-
Confidence 99999999999999999997765544444445689999999999999999999999999999999998 8999864321
Q ss_pred cccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1031 RTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
...+...+.... .. . .......++.+++.+||+.||++|||++|++++|+++
T Consensus 294 ~~~~~~~i~~g~----~~-~-------------~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~l 345 (353)
T 4ase_A 294 DEEFCRRLKEGT----RM-R-------------APDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 345 (353)
T ss_dssp SHHHHHHHHHTC----CC-C-------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CC-C-------------CCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 112222221110 00 0 0011234567788899999999999999999999875
No 28
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=6.7e-48 Score=429.76 Aligned_cols=268 Identities=24% Similarity=0.290 Sum_probs=199.3
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCC----ceeEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKD----CGIIM 894 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~lv 894 (1109)
++|...++||+|+||+||+|++. |+.||||++... ......+++|+..+.+++|||||+++++|.+++ ..++|
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~--~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV 79 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR--EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV 79 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGG--GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEEC-CEEEEEEEECcc--chhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEE
Confidence 45677889999999999999885 899999998432 222233455677777899999999999998754 46999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcC-----CCCCeEEeccCCCCeeeCCCCcEEEecccCC
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYD-----CDPPIVHRDIKPENILLDSEMEPHISDFGIA 969 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~-----~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla 969 (1109)
||||++|+|.++++.. .++|+.+.+++.|+++||+|||.. +.++||||||||+|||+++++.+||+|||+|
T Consensus 80 ~Ey~~~gsL~~~l~~~----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla 155 (303)
T 3hmm_A 80 SDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp EECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred ecCCCCCcHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCC
Confidence 9999999999999864 389999999999999999999942 1349999999999999999999999999999
Q ss_pred cccCCCCCC--ceeeecccCcccccccccccC------CCCccCcchhhHHHHHHHHhCCCCCCCCccccc---------
Q 001275 970 KLLDKSPAS--TTSISVVGTIGYIAPENAFTT------AKSKESDVYSYGVVLLELITRKKALDPSYKERT--------- 1032 (1109)
Q Consensus 970 ~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~------~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~--------- 1032 (1109)
+........ ......+||+.|||||++.+. .++.++|||||||++|||+||+.|+........
T Consensus 156 ~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~ 235 (303)
T 3hmm_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD 235 (303)
T ss_dssp EEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSS
T ss_pred ccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhccccc
Confidence 876544322 122346899999999998764 367899999999999999999887643221111
Q ss_pred -cHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCC
Q 001275 1033 -DIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASV 1102 (1109)
Q Consensus 1033 -~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 1102 (1109)
........... ...++.+.... ...+....+.+++.+||+.||++||||+||+++|+++..
T Consensus 236 ~~~~~~~~~~~~------~~~rp~~p~~~---~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~ 297 (303)
T 3hmm_A 236 PSVEEMRKVVCE------QKLRPNIPNRW---QSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp CCHHHHHHHHTT------SCCCCCCCGGG---GSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhc------ccCCCCCCccc---cchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHH
Confidence 11111111110 00111111111 122455678889999999999999999999999987643
No 29
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=2.6e-47 Score=419.91 Aligned_cols=249 Identities=22% Similarity=0.324 Sum_probs=206.2
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|++.++||+|+||+||+|+. .+++.||||++.... .......+.+|++++++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 5699999999999999999976 568999999996432 2344567999999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||++||+|.++++..+ .+++..+..++.||+.||+||| +++|+||||||+|||+++++.+||+|||+|+.+...
T Consensus 112 Ey~~gG~L~~~i~~~~---~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG---SFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ecCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCC
Confidence 9999999999998754 4899999999999999999999 899999999999999999999999999999987654
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
.........+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ...........-.+.
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-----~~~~~~i~~~~~~~p------ 254 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE-----GLIFAKIIKLEYDFP------ 254 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHTCCCCC------
T ss_pred CCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHcCCCCCC------
Confidence 444444557899999999999999999999999999999999999999965321 111111111111110
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHH
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVV 1094 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl 1094 (1109)
.... .++.+++.+|++.||++|||++|++
T Consensus 255 -------~~~s---~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 255 -------EKFF---PKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp -------TTCC---HHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred -------cccC---HHHHHHHHHHccCCHhHCcChHHHc
Confidence 0112 2355677899999999999999853
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.9e-46 Score=461.10 Aligned_cols=525 Identities=21% Similarity=0.178 Sum_probs=392.8
Q ss_pred EeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccccc
Q 001275 99 TIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNS 178 (1109)
Q Consensus 99 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 178 (1109)
+.+=++-+++ .+|..+. +++++|||++|+|++..|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 3455555676 6787653 589999999999998778899999999999999999997777789999999999999999
Q ss_pred cccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCc-CchhcccccccccccccCcccCCcccc
Q 001275 179 LSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGF-LPESLSNLENLVYLDVGDNNLEGRINF 257 (1109)
Q Consensus 179 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~ 257 (1109)
+++..+..|+++++|++|+|++|++++..+..|+++++|++|+|++|++++. .|..+..+++|++|++++|++++..+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 9987778899999999999999999988888899999999999999999864 688899999999999999999998888
Q ss_pred cccCCCCcc----hhccccccccCCCCcccccccCCcEEEeecCCCCCc-CCccccccccccEEEcCCCC------CCCC
Q 001275 258 GSEKCKNLT----FLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGS-IPSSFGLLARLSSLDLSENQ------LSGK 326 (1109)
Q Consensus 258 ~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~------l~~~ 326 (1109)
.+..+.+++ .++++.|.++...+..+ ....++.+++.+|..... .+..+..+..++...+..+. +...
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 877665544 57889999986554444 445678899998876633 34556677777776664333 3334
Q ss_pred CCCccccccccceeeccCcccCC---CCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhh
Q 001275 327 IPPELGKCKYLTVLHLYANQLEG---EIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEM 403 (1109)
Q Consensus 327 ~p~~l~~l~~L~~L~L~~N~l~~---~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 403 (1109)
....+..+..+...++..+.... ..+..+..+.+++.+++.+|.+... ..+....+|+.|++.+|.+.+..+.
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~-- 346 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL-- 346 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC--
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc--
Confidence 44566667777777766554432 2234455677888888888887743 2355567888888888888754433
Q ss_pred hccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccc--cCCCCcccCccceEEECCCcccccCCCcccCCCCcc
Q 001275 404 TELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTG--EIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTL 481 (1109)
Q Consensus 404 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~--~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L 481 (1109)
.+..|+.+++++|.+.... ....+++|+.|++++|.+.. ..+..+....+|+.++++.|.+.. .+..+..++.|
T Consensus 347 -~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L 422 (635)
T 4g8a_A 347 -KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQL 422 (635)
T ss_dssp -BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTC
T ss_pred -cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccc
Confidence 4567888888888876432 34467788888888888753 344455566778888888887764 44556667777
Q ss_pred chhhccCcccCCCCCC--CCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCccc-CCcchhhhcccccceeecc
Q 001275 482 WRVILKQNQLTGALPE--FSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFS-GLMPQELGNLVSLVTLNIS 558 (1109)
Q Consensus 482 ~~l~l~~N~l~~~~~~--~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~ 558 (1109)
+.++++.|+.....+. +..+..++.++++.|++.+..|..+..++.|+.|+|++|++. +.+|..|..+++|++|+|+
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 7777777776655443 667777777777777777777777777777777777777643 3456667777777777777
Q ss_pred cccccccCCccccCCCCccEEEecCccccCCCCcccccccccceeccccccccCCCcchhhhh-hhhhhhhcccCcCC
Q 001275 559 LNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIPTFISEL-EKLLELQLGGNQLG 635 (1109)
Q Consensus 559 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~ 635 (1109)
+|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|++++..|..+..+ ++|+.|+|++|++.
T Consensus 503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 777777677777777777777777777776666677777777777777777777677777666 56777777777766
No 31
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=1e-47 Score=430.28 Aligned_cols=252 Identities=22% Similarity=0.369 Sum_probs=199.6
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
++|++.+.||+|+||+||+|+. .+|+.||||++.... .......+.+|++++++++|||||++++++.+++..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 5789999999999999999976 468999999996543 23345678999999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSP 976 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~ 976 (1109)
|++||+|.++++..+ ...+++..++.++.||+.||+||| +++||||||||+|||+++++.+||+|||+|+......
T Consensus 104 y~~gg~L~~~i~~~~-~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQK-GVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCcHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCCc
Confidence 999999999997643 345789999999999999999999 8999999999999999999999999999998764321
Q ss_pred CCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchhh
Q 001275 977 ASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSL 1056 (1109)
Q Consensus 977 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 1056 (1109)
......+||+.|||||++.+..|+.++||||+||++|||+||+.||..... ...+....... ....
T Consensus 180 --~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-----~~~~~~i~~~~--~~~~----- 245 (350)
T 4b9d_A 180 --ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM-----KNLVLKIISGS--FPPV----- 245 (350)
T ss_dssp --HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHHHHHHTC--CCCC-----
T ss_pred --ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-----HHHHHHHHcCC--CCCC-----
Confidence 122346799999999999999999999999999999999999999965321 11121111110 0000
Q ss_pred hHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 001275 1057 MEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQ 1096 (1109)
Q Consensus 1057 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 1096 (1109)
.... ..++.+++.+||+.||++|||++|+++|
T Consensus 246 -----~~~~---s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 246 -----SLHY---SYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp -----CTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred -----CccC---CHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 0011 2345667889999999999999999976
No 32
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=8.8e-47 Score=420.94 Aligned_cols=252 Identities=21% Similarity=0.250 Sum_probs=200.5
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
+.|...++||+|+||+||+|+. .+|+.||||++..... ..+|++++++++|||||++++++.+++..|+||||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF------RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence 4577788999999999999976 4689999999854321 24799999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCC-cEEEecccCCcccCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEM-EPHISDFGIAKLLDKSP 976 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~-~~kl~DfGla~~~~~~~ 976 (1109)
++||+|.++++..+ .+++..+..++.||+.||+||| +++||||||||+|||++.++ .+||+|||+|+.+....
T Consensus 132 ~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG---CLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred cCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCC
Confidence 99999999998754 4899999999999999999999 99999999999999999987 69999999999775433
Q ss_pred CCc---eeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccc
Q 001275 977 AST---TSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVD 1053 (1109)
Q Consensus 977 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1053 (1109)
... .....+||+.|||||++.+..|+.++||||+||++|||+||+.||...... .+...+.. ......++
T Consensus 206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~--~~~~~i~~---~~~~~~~~-- 278 (336)
T 4g3f_A 206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRG--PLCLKIAS---EPPPIREI-- 278 (336)
T ss_dssp --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCS--CCHHHHHH---SCCGGGGS--
T ss_pred cccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH--HHHHHHHc---CCCCchhc--
Confidence 221 223457999999999999999999999999999999999999999654222 11111111 11000000
Q ss_pred hhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1054 LSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
+ .....++.+++.+||+.||++|||++|+++++..+
T Consensus 279 --------~---~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~ 314 (336)
T 4g3f_A 279 --------P---PSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKA 314 (336)
T ss_dssp --------C---TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred --------C---ccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence 1 11223456677899999999999999999988654
No 33
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=8.1e-47 Score=414.43 Aligned_cols=248 Identities=25% Similarity=0.389 Sum_probs=195.4
Q ss_pred CCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEec----CCceeEEE
Q 001275 822 NAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLR----KDCGIIMY 895 (1109)
Q Consensus 822 ~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ 895 (1109)
+..++||+|+||+||+|... +++.||+|++.... .......|.+|++++++++|||||+++++|.. ++..|+||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 55678999999999999764 68899999986543 23345679999999999999999999999865 34579999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eEEeccCCCCeeeCC-CCcEEEecccCCccc
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPP--IVHRDIKPENILLDS-EMEPHISDFGIAKLL 972 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~NIll~~-~~~~kl~DfGla~~~ 972 (1109)
|||++|+|.++++... .+++..+..++.||+.||+||| +++ ||||||||+|||++. ++.+||+|||+|+..
T Consensus 109 Ey~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~ylH---~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~ 182 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFK---VMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK 182 (290)
T ss_dssp ECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred eCCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCCCEEecccChhheeEECCCCCEEEEeCcCCEeC
Confidence 9999999999998754 4899999999999999999999 666 999999999999974 799999999999864
Q ss_pred CCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 973 DKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 973 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
... .....+||+.|||||++.+ .|+.++|||||||++|||+||+.||..... .............
T Consensus 183 ~~~----~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~----~~~~~~~i~~~~~------ 247 (290)
T 3fpq_A 183 RAS----FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN----AAQIYRRVTSGVK------ 247 (290)
T ss_dssp CTT----SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS----HHHHHHHHTTTCC------
T ss_pred CCC----ccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCc----HHHHHHHHHcCCC------
Confidence 322 2334689999999998764 699999999999999999999999964321 1122222111110
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
+.... .....++.+++.+||+.||++|||++|+++|-+
T Consensus 248 -~~~~~-------~~~~~~~~~li~~~L~~dP~~R~s~~e~l~Hp~ 285 (290)
T 3fpq_A 248 -PASFD-------KVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAF 285 (290)
T ss_dssp -CGGGG-------GCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred -CCCCC-------ccCCHHHHHHHHHHccCChhHCcCHHHHhcCcc
Confidence 00000 011234566888999999999999999998743
No 34
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=5e-46 Score=426.20 Aligned_cols=252 Identities=23% Similarity=0.363 Sum_probs=206.2
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
+.|+..++||+|+||+||+|+.. +|+.||||++... .......+.+|+++|++++|||||++++++.+.+..|+||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~-~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLR-KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEST-TCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEecc-chhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence 56889999999999999999764 6899999999644 334456789999999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
|+||+|.++++.. .+++..+..++.||+.||+||| +++||||||||+|||++.++.+||+|||+|+.+.....
T Consensus 230 ~~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~ 302 (423)
T 4fie_A 230 LEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP 302 (423)
T ss_dssp CTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC
T ss_pred CCCCcHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCc
Confidence 9999999999753 3899999999999999999999 89999999999999999999999999999997754322
Q ss_pred CceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchhhh
Q 001275 978 STTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLM 1057 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 1057 (1109)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......+...... ... .
T Consensus 303 --~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~~~~--~~~---~---- 369 (423)
T 4fie_A 303 --RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNLPP--RLK---N---- 369 (423)
T ss_dssp --CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSCCC--CCS---C----
T ss_pred --cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcCCCC--CCc---c----
Confidence 22346899999999999999999999999999999999999999964321 1111111111000 000 0
Q ss_pred HHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1058 EEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1058 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
......++.+++.+||+.||++|||++|+++|=+
T Consensus 370 -------~~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp~ 403 (423)
T 4fie_A 370 -------LHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPF 403 (423)
T ss_dssp -------TTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGG
T ss_pred -------cccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHH
Confidence 0111234556778999999999999999999743
No 35
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=5e-46 Score=404.37 Aligned_cols=249 Identities=24% Similarity=0.327 Sum_probs=190.6
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
.+|++.+.||+|+||+||+|.. .+|+.||||++.... .......+.+|++++++++|||||++++++.+++..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 5799999999999999999976 468999999986443 2334567999999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+ +|+|.+++...+ .+++..+..++.|++.||+||| +++|+||||||+|||+++++.+||+|||+|+.....
T Consensus 93 Ey~-~g~L~~~l~~~~---~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~ 165 (275)
T 3hyh_A 93 EYA-GNELFDYIVQRD---KMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG 165 (275)
T ss_dssp ECC-CEEHHHHHHHSC---SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC------
T ss_pred eCC-CCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecCCC
Confidence 999 679999997654 4999999999999999999999 899999999999999999999999999999876443
Q ss_pred CCCceeeecccCcccccccccccCCC-CccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAK-SKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
. .....+||+.|||||++.+..+ +.++||||+||++|||+||+.||.... .................
T Consensus 166 ~---~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~-----~~~~~~~i~~~~~~~p~---- 233 (275)
T 3hyh_A 166 N---FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES-----IPVLFKNISNGVYTLPK---- 233 (275)
T ss_dssp ------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHHHHTCCCCCT----
T ss_pred C---ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCC-----HHHHHHHHHcCCCCCCC----
Confidence 2 2234689999999999998886 589999999999999999999996432 11222221111111111
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
... .++.+++.+|++.||++|||++|+++|=+
T Consensus 234 ---------~~s---~~~~~li~~~L~~dP~~R~s~~eil~hpw 265 (275)
T 3hyh_A 234 ---------FLS---PGAAGLIKRMLIVNPLNRISIHEIMQDDW 265 (275)
T ss_dssp ---------TSC---HHHHHHHHHHSCSSGGGSCCHHHHHHCHH
T ss_pred ---------CCC---HHHHHHHHHHccCChhHCcCHHHHHcCcc
Confidence 111 23556778999999999999999999754
No 36
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=6.8e-46 Score=411.22 Aligned_cols=255 Identities=23% Similarity=0.407 Sum_probs=192.7
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCc-------
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDC------- 890 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------- 890 (1109)
++|++.+.||+|+||+||+|+. .+|+.||||++.....+...+.+.+|++++++++|||||++++++.+.+.
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 4588899999999999999976 46899999999766555556789999999999999999999999876543
Q ss_pred -----eeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEec
Q 001275 891 -----GIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISD 965 (1109)
Q Consensus 891 -----~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~D 965 (1109)
.|+||||+++|+|.++++........++..++.++.|+++||+||| +++|+||||||+|||++.++.+||+|
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~vKl~D 161 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGD 161 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcEEEcc
Confidence 6899999999999999987655455678889999999999999999 89999999999999999999999999
Q ss_pred ccCCcccCCCCCCc----------eeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHH
Q 001275 966 FGIAKLLDKSPAST----------TSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIV 1035 (1109)
Q Consensus 966 fGla~~~~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~ 1035 (1109)
||+|+.+....... .....+||+.|||||++.+..|+.++||||+||++|||++ ||.... +..
T Consensus 162 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~----~~~ 234 (299)
T 4g31_A 162 FGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM----ERV 234 (299)
T ss_dssp CCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH----HHH
T ss_pred CccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc----HHH
Confidence 99998775432211 1234579999999999999999999999999999999996 664211 111
Q ss_pred HHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1036 GWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.......... -+. ..........+++.+||+.||++|||+.|+++|-+
T Consensus 235 ~~~~~~~~~~-------~p~--------~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~ 282 (299)
T 4g31_A 235 RTLTDVRNLK-------FPP--------LFTQKYPCEYVMVQDMLSPSPMERPEAINIIENAV 282 (299)
T ss_dssp HHHHHHHTTC-------CCH--------HHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTSGG
T ss_pred HHHHHHhcCC-------CCC--------CCcccCHHHHHHHHHHcCCChhHCcCHHHHhcCHh
Confidence 1111111000 000 11222334556888999999999999999998643
No 37
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=5.7e-46 Score=409.57 Aligned_cols=251 Identities=22% Similarity=0.317 Sum_probs=196.3
Q ss_pred hCCCCCceeecccCeEEEEEEe----CCCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL----GPNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~----~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 893 (1109)
++|++.+.||+|+||+||+|+. ..++.||||++.... .......+.+|++++++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 5799999999999999999975 247889999985433 22234468899999999999999999999999999999
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
||||++||+|.++++..+ .+++..+..++.|++.||+||| +.+|+||||||+|||+++++.+||+|||+|+...
T Consensus 104 vmEy~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~ 177 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEV---MFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESI 177 (304)
T ss_dssp EECCCTTCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC--
T ss_pred EEEcCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEecccccceecc
Confidence 999999999999998754 4899999999999999999999 8999999999999999999999999999998654
Q ss_pred CCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVD 1053 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1053 (1109)
.... .....+||+.|||||++.+..|+.++||||+||++|||+||+.||..... ................
T Consensus 178 ~~~~--~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-----~~~~~~i~~~~~~~p~--- 247 (304)
T 3ubd_A 178 DHEK--KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR-----KETMTMILKAKLGMPQ--- 247 (304)
T ss_dssp ---C--CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHCCCCCCT---
T ss_pred CCCc--cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH-----HHHHHHHHcCCCCCCC---
Confidence 3322 22346899999999999999999999999999999999999999965321 1111111111111100
Q ss_pred hhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHHhh
Q 001275 1054 LSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPN-----MRDVVRQLV 1098 (1109)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-----~~evl~~L~ 1098 (1109)
.. ..++.+++.+||+.||++||| ++|+++|=+
T Consensus 248 ----------~~---s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~ 284 (304)
T 3ubd_A 248 ----------FL---SPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSF 284 (304)
T ss_dssp ----------TS---CHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGG
T ss_pred ----------cC---CHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcCcc
Confidence 11 234556788999999999998 578887643
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-44 Score=442.51 Aligned_cols=455 Identities=20% Similarity=0.212 Sum_probs=271.8
Q ss_pred CCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeec
Q 001275 119 SALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWL 198 (1109)
Q Consensus 119 ~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 198 (1109)
...+++|+++|++++ +|..+. ++|++|+|++|.+++..|..+.++++|++|+|++|++++..|..|+++++|++|+|
T Consensus 31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 344788888888884 666553 67888888888877666667777777777777777777666777777777777777
Q ss_pred ccccCCCCcccccccccCccEEEeccccccCc-CchhcccccccccccccCcccCCcccccccCCCCcchhccccccccC
Q 001275 199 FSNRLSGTIPESIGNCYRLQELYLNENKLMGF-LPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSG 277 (1109)
Q Consensus 199 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 277 (1109)
++|+++ .+|.. .+++|++|+|++|++++. .|..|+++++|++|++++|++++. .+..+++|
T Consensus 108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L------------ 169 (562)
T 3a79_B 108 SHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHL------------ 169 (562)
T ss_dssp TTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTS------------
T ss_pred CCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhc------------
Confidence 777776 45544 566777777777776653 345666666666666666665531 12222222
Q ss_pred CCCcccccccCCcEEEeecCCC--CCcCCccccccc-cccEEEcCCCCCCCCCCC-ccccccccceeeccCcc-----cC
Q 001275 278 GISPNLGNCSSLTHLDIVGSKL--TGSIPSSFGLLA-RLSSLDLSENQLSGKIPP-ELGKCKYLTVLHLYANQ-----LE 348 (1109)
Q Consensus 278 ~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~-----l~ 348 (1109)
+|++|++++|++ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.|++++|+ +.
T Consensus 170 ----------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~ 239 (562)
T 3a79_B 170 ----------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM 239 (562)
T ss_dssp ----------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHH
T ss_pred ----------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHH
Confidence 225555555555 445555554433 111446666666554443 34556677777777664 22
Q ss_pred CCCCccccCCCCccEEEccCccccccCchHH---HhhcccceeeccCCccCCCCchhh-----hccCCCCeEEccCCcCc
Q 001275 349 GEIPDELGQLSNLQDLELFDNRLTGEFPVSI---WRIASLEYLLVYNNNLLGKLPLEM-----TELKQLKNISLYNNQFS 420 (1109)
Q Consensus 349 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~ 420 (1109)
+ .+..+..+++|+.|+++++.+++.....+ ....+|++|++++|.++|.+|..+ ..++.|+.++++.|.+
T Consensus 240 ~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~- 317 (562)
T 3a79_B 240 T-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF- 317 (562)
T ss_dssp H-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-
T ss_pred H-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-
Confidence 1 12346667777888877777664322211 123478888888888887777776 6666677777777766
Q ss_pred ccCC-cccc---CCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCC-
Q 001275 421 GVIP-QSLG---INSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGAL- 495 (1109)
Q Consensus 421 ~~~p-~~~~---~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~- 495 (1109)
.+| ..+. ...+|++|++++|.+.... ....+++|++|++++|++++.+|..++.+++|+.|++++|++++..
T Consensus 318 -~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 394 (562)
T 3a79_B 318 -LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394 (562)
T ss_dssp -SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH
T ss_pred -ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc
Confidence 344 2222 2256777888887775322 1145667777777777777666666666666666666666666432
Q ss_pred -C-CCCCCCCCceEEeecCccCCCCCC-cccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccC
Q 001275 496 -P-EFSKNPVLSHLDVSRNNISGAIPS-SIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSK 572 (1109)
Q Consensus 496 -~-~~~~~~~L~~L~Ls~N~i~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 572 (1109)
| .+..+++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|++|+|++|+|+ .+|..+..
T Consensus 395 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~ 471 (562)
T 3a79_B 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTH 471 (562)
T ss_dssp HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTS
T ss_pred chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcC
Confidence 2 255666666666666666653333 355566666666666666555444433 45555555555555 45554445
Q ss_pred CCCccEEEecCccccCCCCcc-cccccccceeccccccccCC
Q 001275 573 CKNLEVFDVSFNLLNGSIPSS-LRSWKSLSILKLSENHFTGG 613 (1109)
Q Consensus 573 l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~ 613 (1109)
+++|+.|||++|+|+ .+|.. +..+++|+.|++++|++++.
T Consensus 472 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 472 LQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 555555555555555 34433 55555555555555555543
No 39
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.7e-44 Score=422.17 Aligned_cols=426 Identities=26% Similarity=0.279 Sum_probs=221.0
Q ss_pred CcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhc
Q 001275 190 LKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLD 269 (1109)
Q Consensus 190 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 269 (1109)
.+.|++|++++|.+ +.+|.+|+++++|++|++++|++++.+|.+++++++|+.+++.+|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 46778888888887 67787788888888888888888777787787777777777766542 3567777
Q ss_pred cccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCC
Q 001275 270 LSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEG 349 (1109)
Q Consensus 270 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 349 (1109)
+++|.+++ +|.. .++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++
T Consensus 78 l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 78 LNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp CTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS
T ss_pred ecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC
Confidence 77777775 2321 3567777777777775 4433 3667777777777764 2321 1567777777777764
Q ss_pred CCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccC
Q 001275 350 EIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGI 429 (1109)
Q Consensus 350 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 429 (1109)
+| .++.+++|++|++++|++++ +|..+ .+|++|++++|++++ +| .+..+++|+.|++++|++++ +|...
T Consensus 146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~-- 214 (454)
T 1jl5_A 146 -LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP-- 214 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC--
T ss_pred -Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc--
Confidence 55 46777777777777777664 44322 356666666666654 33 35556666666666666554 23211
Q ss_pred CCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEe
Q 001275 430 NSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDV 509 (1109)
Q Consensus 430 ~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~L 509 (1109)
++|++|++++|.++ .+|. +..+++|++|++ ++|++++. |. ..++|++|++
T Consensus 215 -~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l------------------------~~N~l~~l-~~--~~~~L~~L~l 264 (454)
T 1jl5_A 215 -LSLESIVAGNNILE-ELPE-LQNLPFLTTIYA------------------------DNNLLKTL-PD--LPPSLEALNV 264 (454)
T ss_dssp -TTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC------------------------CSSCCSSC-CS--CCTTCCEEEC
T ss_pred -CcccEEECcCCcCC-cccc-cCCCCCCCEEEC------------------------CCCcCCcc-cc--cccccCEEEC
Confidence 34555555555554 3332 444444444444 44444432 22 1256777777
Q ss_pred ecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCC
Q 001275 510 SRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGS 589 (1109)
Q Consensus 510 s~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 589 (1109)
++|++++ +|.. .++|++|++++|++++. |.. .++|++|++++|++++ ++.. .++|+.|++++|++++
T Consensus 265 ~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~- 331 (454)
T 1jl5_A 265 RDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLIE- 331 (454)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCCSC-
T ss_pred CCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCcccc-
Confidence 7777774 4543 25677777777777752 211 1567788888887774 2221 1578888888888885
Q ss_pred CCcccccccccceeccccccccCCCcchhhhhhhhhhhhcccCcCCC--CCCCCchhhhhhhhhhcccccccccccCcch
Q 001275 590 IPSSLRSWKSLSILKLSENHFTGGIPTFISELEKLLELQLGGNQLGG--EIPPSIGALQDLSYALNLSKNGLTGRIPSDL 667 (1109)
Q Consensus 590 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g--~ip~~~~~l~~l~~~L~L~~N~l~g~ip~~l 667 (1109)
+|.. +++|+.|++++|+++ .+|. .+++|+.|++++|++++ .+|.+++. |+.|++.|.+|..
T Consensus 332 lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~---------L~~n~~~~~i~~~- 394 (454)
T 1jl5_A 332 LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED---------LRMNSHLAEVPEL- 394 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE---------EECCC---------
T ss_pred cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh---------hhhcccccccccc-
Confidence 6654 477888888888888 5676 36788888888888887 67776643 4567888888874
Q ss_pred hhcccCCeEEccCCcccc--cCCCCCccccceEEeeeccccccccchhhhhc
Q 001275 668 EKLSKLEQLDISSNNLTG--TLSPLSNIHSLVEVNVSYNLFTGPVPETLMNL 717 (1109)
Q Consensus 668 ~~l~~L~~L~Ls~N~l~g--~~~~l~~~~~l~~l~~~~n~l~g~~p~~~~~~ 717 (1109)
+++|+.|||++|+++| .+|. .++.|.+++|.+.+++|.+...+
T Consensus 395 --~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 395 --PQNLKQLHVETNPLREFPDIPE-----SVEDLRMNSERVVDPYEFAHETT 439 (454)
T ss_dssp ----------------------------------------------------
T ss_pred --cCcCCEEECCCCcCCccccchh-----hHhheeCcCcccCCccccCHHHh
Confidence 5789999999999997 5653 46677788999988887554443
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.4e-44 Score=438.69 Aligned_cols=451 Identities=18% Similarity=0.191 Sum_probs=283.4
Q ss_pred EEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccc
Q 001275 74 VSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGN 153 (1109)
Q Consensus 74 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n 153 (1109)
..++++++++++ +|..+. ++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 567888888875 776664 78999999999998877788899999999999999999888888999999999999999
Q ss_pred cccccCCcccccccccceeccccccccc-ccccccCCCcccceeecccccCCCCcccccccccCc--cEEEeccccc--c
Q 001275 154 LLDGEIPEPLFRILGLQYVFLNNNSLSG-SIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRL--QELYLNENKL--M 228 (1109)
Q Consensus 154 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L--~~L~L~~N~l--~ 228 (1109)
+++ .+|.. .+++|++|++++|++++ .+|..|+++++|++|++++|++++. .++.+++| ++|++++|++ +
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 988 67766 78888999999988886 3467888888888888888888753 45555555 8888888888 7
Q ss_pred CcCchhccccc--ccccccccCcccCCccc-ccccCCCCcchhcccccc-----ccCCCCcccccccCCcEEEeecCCCC
Q 001275 229 GFLPESLSNLE--NLVYLDVGDNNLEGRIN-FGSEKCKNLTFLDLSYNR-----FSGGISPNLGNCSSLTHLDIVGSKLT 300 (1109)
Q Consensus 229 ~~~~~~l~~l~--~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~L~~n~l~ 300 (1109)
+..|..+..++ .| .+++++|.+.+.++ ..+..+++|+.|++++|+ +.+ ....+..+++|+.|+++++.+.
T Consensus 185 ~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 185 GGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp SSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCc
Confidence 77787777654 33 45667777665433 234556667777777664 111 1223455566666666655554
Q ss_pred CcCCcc---ccccccccEEEcCCCCCCCCCCCcc-----ccccccceeeccCcccCCCCCccccCCCCccEEEccCcccc
Q 001275 301 GSIPSS---FGLLARLSSLDLSENQLSGKIPPEL-----GKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLT 372 (1109)
Q Consensus 301 ~~~~~~---~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 372 (1109)
+..... ....++|++|++++|+++|.+|..+ .+++.|+.++++.|.+ .+|.
T Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~------------------- 321 (562)
T 3a79_B 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSK------------------- 321 (562)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCH-------------------
T ss_pred HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecCh-------------------
Confidence 321100 0111255555555555555555444 4444444444444443 2221
Q ss_pred ccCchHHHhh---cccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccc--cC
Q 001275 373 GEFPVSIWRI---ASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTG--EI 447 (1109)
Q Consensus 373 ~~~~~~~~~l---~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~--~~ 447 (1109)
..+..+ .+|+.|++++|.+.... ....+++|+.|++++|++++.+|..++.+++|++|++++|.+++ .+
T Consensus 322 ----~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 395 (562)
T 3a79_B 322 ----EALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395 (562)
T ss_dssp ----HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHH
T ss_pred ----hhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccc
Confidence 222221 34555555555543211 01344555555555555555555555555555555555555554 22
Q ss_pred CCCcccCccceEEECCCcccccCCCc-ccCCCCccchhhccCcccCCCCCC-CCCCCCCceEEeecCccCCCCCCccccc
Q 001275 448 PPNLCFGKQLRVLNMGQNQFHGPIPS-LLGSCPTLWRVILKQNQLTGALPE-FSKNPVLSHLDVSRNNISGAIPSSIGNS 525 (1109)
Q Consensus 448 p~~~~~~~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~L~~L~Ls~N~i~~~~p~~~~~l 525 (1109)
|..+..+++|++|++++|++++.+|. .+..+++|+.|++++|++++..|. +. ++|++|++++|+|+ .+|..+..+
T Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l 472 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHL 472 (562)
T ss_dssp HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSS
T ss_pred hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCC
Confidence 33445555555555555555553332 355555666666666666544433 22 56777777777776 566666677
Q ss_pred ccccEEeccCCcccCCcchh-hhcccccceeecccccccccC
Q 001275 526 INLTSIDFSSNKFSGLMPQE-LGNLVSLVTLNISLNHVEGSL 566 (1109)
Q Consensus 526 ~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~ 566 (1109)
++|++|+|++|+|++ +|.. +..+++|+.|++++|.+.+..
T Consensus 473 ~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 473 QALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 777777777777774 4444 777777777777777776543
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.6e-43 Score=413.66 Aligned_cols=429 Identities=23% Similarity=0.280 Sum_probs=187.4
Q ss_pred cCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccce
Q 001275 92 GHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQY 171 (1109)
Q Consensus 92 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 171 (1109)
...++|++|++++|++ |.+|++++++++|++|++++|.++|.+|..++++++|+.+++++|.. .++++
T Consensus 8 ~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~ 75 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHE 75 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSE
T ss_pred cccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCE
Confidence 3456777777777777 56777777777777777777777777777777777777666666542 35666
Q ss_pred ecccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCccc
Q 001275 172 VFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNL 251 (1109)
Q Consensus 172 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l 251 (1109)
|++++|++++ +|.. .++|++|++++|++++ +|.. +++|++|++++|++++. |.. .++|++|++++|++
T Consensus 76 L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 76 LELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQL 143 (454)
T ss_dssp EECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCC
T ss_pred EEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCC
Confidence 7777776664 3331 2456666666666664 4432 25566666666666542 111 13555555555555
Q ss_pred CCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCcc
Q 001275 252 EGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPEL 331 (1109)
Q Consensus 252 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 331 (1109)
++ +| .+..+++|++|++++|++++ +|..+ .+|++|++++|++++ +| .++.+++|+.|++++|++++ +|...
T Consensus 144 ~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~ 214 (454)
T 1jl5_A 144 EK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP 214 (454)
T ss_dssp SS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC
T ss_pred CC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc
Confidence 54 23 35555555555555555553 22221 245555555555543 23 34445555555555555443 22221
Q ss_pred ccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCe
Q 001275 332 GKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKN 411 (1109)
Q Consensus 332 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 411 (1109)
++|++|++++|+++ .+|. ++.+++|++|++++|++++ +| .. .++|+.
T Consensus 215 ---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~------------------------~~---~~~L~~ 261 (454)
T 1jl5_A 215 ---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LP------------------------DL---PPSLEA 261 (454)
T ss_dssp ---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CC------------------------SC---CTTCCE
T ss_pred ---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cc------------------------cc---ccccCE
Confidence 24444555555444 3332 4444444555554444442 22 21 244555
Q ss_pred EEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCccc
Q 001275 412 ISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQL 491 (1109)
Q Consensus 412 L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 491 (1109)
|++++|++++ +|.. .++|++|++++|.+++. |.. .++|++|++++|++++ ++.. .++|+.|++++|++
T Consensus 262 L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 262 LNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKL 329 (454)
T ss_dssp EECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCC
T ss_pred EECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCcc
Confidence 5555555553 3322 24555555555555541 110 1355566666666553 1111 13556666666666
Q ss_pred CCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccC--CcchhhhcccccceeecccccccccCCcc
Q 001275 492 TGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSG--LMPQELGNLVSLVTLNISLNHVEGSLPSQ 569 (1109)
Q Consensus 492 ~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 569 (1109)
++. |.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|.+++.+ +.|.+.+.+|..
T Consensus 330 ~~l-p~~--~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~ 394 (454)
T 1jl5_A 330 IEL-PAL--PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL 394 (454)
T ss_dssp SCC-CCC--CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC--------
T ss_pred ccc-ccc--CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc
Confidence 652 321 467888888888887 4565 36778888888888887 566666543 346666667763
Q ss_pred ccCCCCccEEEecCccccC--CCCcccccccccceeccccccccCCCcchhhhhh
Q 001275 570 LSKCKNLEVFDVSFNLLNG--SIPSSLRSWKSLSILKLSENHFTGGIPTFISELE 622 (1109)
Q Consensus 570 l~~l~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 622 (1109)
+++|+.||+++|++++ .+|.+ ++.|.+.+|.+.+.+|.+.....
T Consensus 395 ---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~~~~~~ 440 (454)
T 1jl5_A 395 ---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFAHETTD 440 (454)
T ss_dssp -------------------------------------------------------
T ss_pred ---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccccCHHHhh
Confidence 4788888899888887 66644 45566788888877766554443
No 42
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=8.5e-43 Score=397.16 Aligned_cols=202 Identities=25% Similarity=0.398 Sum_probs=172.2
Q ss_pred HhhCCCCCceeecccCeEEEEEEeC----CCcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCce
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASLG----PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCG 891 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 891 (1109)
..++|++.++||+|+||+||+|+.+ +++.||+|++... ....++.+|+++++++ +|||||++++++.+.+..
T Consensus 19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~---~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~ 95 (361)
T 4f9c_A 19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT---SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV 95 (361)
T ss_dssp GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT---SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc---cCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence 4578999999999999999999652 4688999988432 3345788999999998 699999999999999999
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCC-CcEEEecccCCc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSE-MEPHISDFGIAK 970 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~-~~~kl~DfGla~ 970 (1109)
|+||||+++|+|.++++. +++.++..++.|++.||+||| +.+|+||||||+|||++.+ +.+||+|||+|+
T Consensus 96 ~lvmE~~~g~~L~~~~~~------l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~ 166 (361)
T 4f9c_A 96 VIAMPYLEHESFLDILNS------LSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQ 166 (361)
T ss_dssp EEEEECCCCCCHHHHHTT------CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred EEEEeCCCcccHHHHHcC------CCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCCCCc
Confidence 999999999999999853 889999999999999999999 8999999999999999877 799999999998
Q ss_pred ccCCCCCC--------------------------ceeeecccCcccccccccccC-CCCccCcchhhHHHHHHHHhCCCC
Q 001275 971 LLDKSPAS--------------------------TTSISVVGTIGYIAPENAFTT-AKSKESDVYSYGVVLLELITRKKA 1023 (1109)
Q Consensus 971 ~~~~~~~~--------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwSlGvil~elltg~~p 1023 (1109)
........ ......+||+.|+|||++.+. .|+.++||||+||++|||++|+.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~P 246 (361)
T 4f9c_A 167 GTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYP 246 (361)
T ss_dssp ECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSS
T ss_pred ccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCC
Confidence 65432211 112235799999999998876 489999999999999999999999
Q ss_pred CCCCccc
Q 001275 1024 LDPSYKE 1030 (1109)
Q Consensus 1024 ~~~~~~~ 1030 (1109)
|.+...+
T Consensus 247 f~~~~~~ 253 (361)
T 4f9c_A 247 FYKASDD 253 (361)
T ss_dssp SSCCSSH
T ss_pred CCCCCCH
Confidence 9765443
No 43
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-41 Score=405.72 Aligned_cols=364 Identities=19% Similarity=0.183 Sum_probs=257.5
Q ss_pred CCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCC-CccccccCccceeccccccccccCCcccccccccceec
Q 001275 95 SKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDI-PDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVF 173 (1109)
Q Consensus 95 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 173 (1109)
++|++|+|++|++++..|..|+++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999888999999999999999999998655 56799999999999999999988899999999999999
Q ss_pred ccccccccccccc--cCCCcccceeecccccCCCCcccc-cccccCccEEEeccccccCcCchhcccc--cccccccccC
Q 001275 174 LNNNSLSGSIPRN--VGDLKEVEALWLFSNRLSGTIPES-IGNCYRLQELYLNENKLMGFLPESLSNL--ENLVYLDVGD 248 (1109)
Q Consensus 174 Ls~n~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~~l~~l--~~L~~L~L~~ 248 (1109)
+++|++++..|.. |+++++|++|+|++|++++..|.. ++++++|++|++++|++++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999999866665 899999999999999999888876 8899999999999999999888888877 6788888888
Q ss_pred cccCCcccccc--------cCCCCcchhccccccccCCCCcccccc---cCCcEEEeecCCCCCcCCccccccccccEEE
Q 001275 249 NNLEGRINFGS--------EKCKNLTFLDLSYNRFSGGISPNLGNC---SSLTHLDIVGSKLTGSIPSSFGLLARLSSLD 317 (1109)
Q Consensus 249 N~l~~~~~~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 317 (1109)
|.+.+..+..+ ..+++|++|++++|++++..+..+... ++|+.|++++|.+.+..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------- 255 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-------------- 255 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------
Confidence 88876554432 234555555666555555444444332 45555555555443211
Q ss_pred cCCCCCCCCCCCccccc--cccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCcc
Q 001275 318 LSENQLSGKIPPELGKC--KYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNL 395 (1109)
Q Consensus 318 Ls~N~l~~~~p~~l~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 395 (1109)
+..+.+.+..+..+..+ ++|+.|++++|++.+..|..++.+++|++|+|++|++++..|..+..+++|++|++++|.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 11112222222223222 4566666666666666666666666666666666666655555666666666666666666
Q ss_pred CCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCC
Q 001275 396 LGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIP 472 (1109)
Q Consensus 396 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p 472 (1109)
++..|..+..+++|++|+|++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 65556666666666666666666666666666666666666666666665444455556666666666666665444
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.3e-43 Score=393.09 Aligned_cols=293 Identities=27% Similarity=0.467 Sum_probs=225.8
Q ss_pred cCChhhHHHHHHHHHhccCCCCcccCCCCCCCCCCce--eeeEEecCCC--CcEEEEEecccCCcc--ccCCcccCCCCc
Q 001275 24 NALNGDGVALLSLMRHWNSVPPLIISSWNSSDSTPCQ--WVGIECDDDA--HNVVSFNLSSYGVSG--QLGPEIGHLSKL 97 (1109)
Q Consensus 24 ~~~~~~~~all~~~~~~~~~~~~~l~sW~~~~~~~c~--w~gv~C~~~~--~~v~~l~l~~~~l~~--~~~~~l~~l~~L 97 (1109)
.|.++|++||++||+++. +|. .+++|+.+ .+||. |.||+|+..+ ++|+.++++++.++| .+|+.++++++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~-~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCC-CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 599999999999999995 454 78999764 46888 9999998755 789999999999998 888899999999
Q ss_pred cEeecCC-CcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccc
Q 001275 98 QTIDLSS-NNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNN 176 (1109)
Q Consensus 98 ~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 176 (1109)
++|+|++ |++.+.+|..|+++++|++|+|++|++++.+|..|.++++|++|+|++|.+++.+|..+..+++|++|++++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 9999995 888888888899999999999999999888888888888999999888888888888888888888888888
Q ss_pred cccccccccccCCCc-ccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcc
Q 001275 177 NSLSGSIPRNVGDLK-EVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRI 255 (1109)
Q Consensus 177 n~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 255 (1109)
|++++.+|..++.++ +|++|++++|++++.+|..++.++ |++|++++|++++..|..|.++++|++|++++|++++.+
T Consensus 159 N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 888877777777776 777777777777777777777766 777777777777666666666666666666666665443
Q ss_pred cccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCcccccc
Q 001275 256 NFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCK 335 (1109)
Q Consensus 256 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 335 (1109)
+. +..+++|++|++++|++++.+|..+..+++|++|+|++|+++|.+|.. +.++
T Consensus 238 ~~-------------------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~ 291 (313)
T 1ogq_A 238 GK-------------------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291 (313)
T ss_dssp GG-------------------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGG
T ss_pred Cc-------------------------ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cccc
Confidence 33 344455555555555555555666666666666666666666555554 5566
Q ss_pred ccceeeccCcc
Q 001275 336 YLTVLHLYANQ 346 (1109)
Q Consensus 336 ~L~~L~L~~N~ 346 (1109)
+|+.|++++|+
T Consensus 292 ~L~~l~l~~N~ 302 (313)
T 1ogq_A 292 RFDVSAYANNK 302 (313)
T ss_dssp GSCGGGTCSSS
T ss_pred ccChHHhcCCC
Confidence 66666666665
No 45
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=399.90 Aligned_cols=273 Identities=22% Similarity=0.299 Sum_probs=201.5
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEecC------Cc
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK------DC 890 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~ 890 (1109)
++|++.+.||+|+||+||+|.. .+|+.||||++..... ....+.+.+|+++|++++|||||++++++... +.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 5788999999999999999976 5799999999854332 23345788999999999999999999987643 56
Q ss_pred eeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 891 GIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 891 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
.|+|||||+ |+|.+++...+ .+++..+..++.||+.||+||| +.+||||||||+|||++.++.+||+|||+|+
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~~---~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~ 206 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSSQ---PLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMAR 206 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSSS---CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred EEEEEeCCC-CCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeecceee
Confidence 799999996 68999997643 4999999999999999999999 8999999999999999999999999999998
Q ss_pred ccCCCCC--CceeeecccCcccccccccccC-CCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccc
Q 001275 971 LLDKSPA--STTSISVVGTIGYIAPENAFTT-AKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEE 1047 (1109)
Q Consensus 971 ~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1109)
.+..... .......+||+.|||||++.+. .++.++||||+||++|||++|+.||.... ....+.............
T Consensus 207 ~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~-~~~~l~~I~~~~g~p~~~ 285 (398)
T 4b99_A 207 GLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKN-YVHQLQLIMMVLGTPSPA 285 (398)
T ss_dssp CC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSS-HHHHHHHHHHHHCCCCGG
T ss_pred ecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCC-HHHHHHHHHHhcCCCChH
Confidence 7643321 2233457899999999998875 46999999999999999999999996532 111222222221111111
Q ss_pred cccccchhhhHHh---h--------hchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1048 INDIVDLSLMEEM---L--------VSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1048 ~~~~~d~~~~~~~---~--------~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
....+........ . ....+....++.+++.+|++.||++|||++|+++|=+-
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f 348 (398)
T 4b99_A 286 VIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFL 348 (398)
T ss_dssp GTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGG
T ss_pred HhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcCHhh
Confidence 1000000000000 0 00001112356678889999999999999999998543
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.6e-41 Score=398.05 Aligned_cols=363 Identities=20% Similarity=0.202 Sum_probs=246.0
Q ss_pred CCCcEeeccCccccCCCCccccccCccceeccccccccccC-CcccccccccceecccccccccccccccCCCcccceee
Q 001275 119 SALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEI-PEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALW 197 (1109)
Q Consensus 119 ~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 197 (1109)
++|++|||++|.+++..|..|+++++|++|+|++|.+.+.+ |..+..+++|++|+|++|++++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999888999999999999999999997665 56788899999999999999988899999999999999
Q ss_pred cccccCCCCcccc--cccccCccEEEeccccccCcCchh-cccccccccccccCcccCCcccccccCC--CCcchhcccc
Q 001275 198 LFSNRLSGTIPES--IGNCYRLQELYLNENKLMGFLPES-LSNLENLVYLDVGDNNLEGRINFGSEKC--KNLTFLDLSY 272 (1109)
Q Consensus 198 L~~N~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~Ls~ 272 (1109)
|++|++++.+|.. |+.+++|++|+|++|++++..|.. +.++++|++|++++|++++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998866555 889999999999999999887776 7889999999999999888777777665 6788888888
Q ss_pred ccccCCCCccc--------ccccCCcEEEeecCCCCCcCCcccccc---ccccEEEcCCCCCCCCCCCccccccccceee
Q 001275 273 NRFSGGISPNL--------GNCSSLTHLDIVGSKLTGSIPSSFGLL---ARLSSLDLSENQLSGKIPPELGKCKYLTVLH 341 (1109)
Q Consensus 273 N~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 341 (1109)
|.+.+..+..+ ..+++|++|++++|++++..|..+... ++|+.|++++|.+.+..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------- 255 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-------------- 255 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------
Confidence 88776544332 244566666666666666555555443 55666666666544321
Q ss_pred ccCcccCCCCCccccC--CCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcC
Q 001275 342 LYANQLEGEIPDELGQ--LSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQF 419 (1109)
Q Consensus 342 L~~N~l~~~~p~~l~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 419 (1109)
+..+.+.+..+..+.. .++|++|++++|++++..|. .+..+++|+.|++++|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------------------------~~~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS------------------------VFSHFTDLEQLTLAQNEI 311 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT------------------------TTTTCTTCCEEECTTSCC
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchh------------------------hcccCCCCCEEECCCCcc
Confidence 1111122111222221 23455555555555544444 444445555555555555
Q ss_pred cccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCC-C
Q 001275 420 SGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPE-F 498 (1109)
Q Consensus 420 ~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~ 498 (1109)
++..|..++.+++|++|++++|.+++..|..+..+++|++|+|++|++++..|..+..+++|++|++++|++++.++. +
T Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 544444454555555555555555444444455555555555555555555555555555555555555666554444 5
Q ss_pred CCCCCCceEEeecCccCCCCC
Q 001275 499 SKNPVLSHLDVSRNNISGAIP 519 (1109)
Q Consensus 499 ~~~~~L~~L~Ls~N~i~~~~p 519 (1109)
..+++|++|++++|++++..|
T Consensus 392 ~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 392 DRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCcccEEEccCCCcccCCC
Confidence 667777777777777776655
No 47
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=7.6e-41 Score=379.83 Aligned_cols=292 Identities=39% Similarity=0.689 Sum_probs=235.1
Q ss_pred CCCcccHHHHHHHhhCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeE
Q 001275 805 EGPSYLLKQVIEATENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDF 884 (1109)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~ 884 (1109)
....+..+++..++++|...+.||+|+||+||+|+..+++.||||++...........+.+|++++++++||||++++++
T Consensus 16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~ 95 (326)
T 3uim_A 16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 95 (326)
T ss_dssp CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEE
Confidence 34567889999999999999999999999999999888999999998665555555579999999999999999999999
Q ss_pred EecCCceeEEEEeccCCCHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEE
Q 001275 885 WLRKDCGIIMYRYMENGSLRDVLHSITP-PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHI 963 (1109)
Q Consensus 885 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl 963 (1109)
+...+..++||||+++|+|.++++.... ...+++..+..++.|++.||+|||..+..+|+||||||+||+++.++.+||
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl 175 (326)
T 3uim_A 96 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVV 175 (326)
T ss_dssp ECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEE
T ss_pred EecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEe
Confidence 9999999999999999999999987542 345999999999999999999999433339999999999999999999999
Q ss_pred ecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCC---ccccccHHHHHHH
Q 001275 964 SDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPS---YKERTDIVGWVRS 1040 (1109)
Q Consensus 964 ~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~---~~~~~~~~~~~~~ 1040 (1109)
+|||+++...... ........||+.|+|||++.+..++.++||||+||++|||++|+.||+.. .........|+..
T Consensus 176 ~Dfg~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 254 (326)
T 3uim_A 176 GDFGLAKLMDYKD-THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKG 254 (326)
T ss_dssp CCCSSCEECCSSS-SCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTT
T ss_pred ccCccccccCccc-ccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHH
Confidence 9999998765432 22333456999999999999889999999999999999999999999531 1223334445444
Q ss_pred hhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCC
Q 001275 1041 VWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASV 1102 (1109)
Q Consensus 1041 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 1102 (1109)
.... .......+...... .......++.+++.+||+.||++|||++|++++|++...
T Consensus 255 ~~~~-~~~~~~~~~~~~~~----~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~~ 311 (326)
T 3uim_A 255 LLKE-KKLEALVDVDLQGN----YKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGL 311 (326)
T ss_dssp TTSS-CCSTTSSCTTCTTS----CCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSSC
T ss_pred Hhhc-hhhhhhcChhhccc----cCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcch
Confidence 3322 22333333332221 234566788899999999999999999999999987644
No 48
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=5.4e-41 Score=400.76 Aligned_cols=252 Identities=23% Similarity=0.272 Sum_probs=200.1
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc--ccChHHH---HHHHHHHhcCCCCceeeEeeEEecCCcee
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH--KRGSLSM---KREIQTIGKIRHRNLVRLEDFWLRKDCGI 892 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~---~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 892 (1109)
++|++.++||+|+||+||+|+.. +|+.||||++..... ......+ .+++.+++.++|||||++++++.+.+..|
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 57899999999999999999764 689999999954321 2222233 34467778889999999999999999999
Q ss_pred EEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCccc
Q 001275 893 IMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLL 972 (1109)
Q Consensus 893 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~ 972 (1109)
+||||++||+|.+++...+ .+++..+..++.||+.||+||| +.+||||||||+|||++.+|.+||+|||+|+.+
T Consensus 269 lVmEy~~GGdL~~~l~~~~---~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~ 342 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLSQHG---VFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDF 342 (689)
T ss_dssp EEECCCCSCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceeeec
Confidence 9999999999999998754 4899999999999999999999 999999999999999999999999999999877
Q ss_pred CCCCCCceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccc
Q 001275 973 DKSPASTTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDI 1051 (1109)
Q Consensus 973 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1109)
..... ...+||+.|||||++.+ ..|+.++||||+||++|||++|+.||..... .+................
T Consensus 343 ~~~~~----~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~--~~~~~i~~~i~~~~~~~p-- 414 (689)
T 3v5w_A 343 SKKKP----HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKT--KDKHEIDRMTLTMAVELP-- 414 (689)
T ss_dssp SSCCC----CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGC--CCHHHHHHHHHHCCCCCC--
T ss_pred CCCCC----CCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHhhcCCCCCCC--
Confidence 54322 23689999999999864 5799999999999999999999999964321 122222222111111110
Q ss_pred cchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHHhh
Q 001275 1052 VDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPN-----MRDVVRQLV 1098 (1109)
Q Consensus 1052 ~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-----~~evl~~L~ 1098 (1109)
.... .++.+++.+|++.||++|++ ++|+++|-+
T Consensus 415 -----------~~~S---~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~Hpf 452 (689)
T 3v5w_A 415 -----------DSFS---PELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPF 452 (689)
T ss_dssp -----------TTSC---HHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGG
T ss_pred -----------ccCC---HHHHHHHHHHccCCHhHCCCCCCCCHHHHhcCcc
Confidence 1112 23556777999999999998 799988764
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.9e-40 Score=390.80 Aligned_cols=320 Identities=20% Similarity=0.178 Sum_probs=165.3
Q ss_pred CcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCCCCccccc
Q 001275 206 TIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGN 285 (1109)
Q Consensus 206 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 285 (1109)
..+..++++++|++|++++|.+++. | .+..+++|++|++++|++++. + +..+++|++|++++|++++. + +++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred ccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 3334444455555555555555443 2 344555555555555555442 1 44455555555555555542 1 555
Q ss_pred ccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccEEE
Q 001275 286 CSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLE 365 (1109)
Q Consensus 286 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 365 (1109)
+++|++|++++|++++. | ++.+++|++|++++|++++. + ++.+++|++|++++|+..+.+ .++.+++|++|+
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 55555555555555542 2 55556666666666666542 2 555566666666666443333 255566666666
Q ss_pred ccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccc
Q 001275 366 LFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTG 445 (1109)
Q Consensus 366 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~ 445 (1109)
+++|++++ +| +..+++|+.|++++|++++. .+..+++|+.|++++|++++ +| ++.+++|++|++++|.+++
T Consensus 177 ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 177 CSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred CCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 66666654 33 44555566666666655543 25556666666666666665 34 5556666666666666664
Q ss_pred cCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCccccc
Q 001275 446 EIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNS 525 (1109)
Q Consensus 446 ~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l 525 (1109)
.. +..+++|+.|++++|++ +.+++++|++.+.+| ++.+++|+.|++++|...+.+|. ..
T Consensus 248 ~~---~~~l~~L~~L~l~~n~L--------------~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~---~~ 306 (457)
T 3bz5_A 248 LD---VSTLSKLTTLHCIQTDL--------------LEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDC---QA 306 (457)
T ss_dssp CC---CTTCTTCCEEECTTCCC--------------SCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEEC---TT
T ss_pred cC---HHHCCCCCEEeccCCCC--------------CEEECCCCccCCccc-ccccccCCEEECCCCcccceecc---CC
Confidence 32 23345556666555432 234455555444443 34445555555555555444443 12
Q ss_pred ccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCcccc
Q 001275 526 INLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLN 587 (1109)
Q Consensus 526 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 587 (1109)
.+|+.|++++| ++|++|++++|++++ ++ ++.+++|+.||+++|+|+
T Consensus 307 ~~L~~L~l~~~-------------~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 307 AGITELDLSQN-------------PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CCCSCCCCTTC-------------TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCC
T ss_pred CcceEechhhc-------------ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCC
Confidence 33444444433 344555555555554 22 444555555555555554
No 50
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=6.1e-41 Score=379.63 Aligned_cols=276 Identities=35% Similarity=0.565 Sum_probs=223.2
Q ss_pred HHhhCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 816 EATENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 816 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
.++++|+..+.||+|+||+||+|...+++.||||++... .......+.+|++++++++||||+++++++...+..++||
T Consensus 36 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 114 (321)
T 2qkw_B 36 EATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPE-SSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIY 114 (321)
T ss_dssp CCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSC-CSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEE
T ss_pred HHHhccCccceeecCCCeeEEEEEECCCCEEEEEEeccc-ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEE
Confidence 456789999999999999999999888999999987433 3344567899999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 896 RYMENGSLRDVLHSITP-PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
||+++|+|.+++..... ...+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 115 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 191 (321)
T 2qkw_B 115 KYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTE 191 (321)
T ss_dssp ECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECTTCCEEECCCTTCEECSS
T ss_pred EcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECCCCCEEEeeccccccccc
Confidence 99999999999976432 235899999999999999999999 88999999999999999999999999999986544
Q ss_pred CCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccc-cccHHHHHHHhhcCccccccccc
Q 001275 975 SPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKE-RTDIVGWVRSVWSDTEEINDIVD 1053 (1109)
Q Consensus 975 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d 1053 (1109)
...........||+.|+|||++.+..++.++||||||+++|||++|+.||...... ......|...... .......++
T Consensus 192 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 270 (321)
T 2qkw_B 192 LDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHN-NGQLEQIVD 270 (321)
T ss_dssp SSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHT-TTCCCSSSS
T ss_pred ccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccc-cccHHHhcC
Confidence 33333333456899999999999999999999999999999999999999754322 2233333322221 122233333
Q ss_pred hhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1054 LSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
+..... ...+...++.+++.+||+.||++||+++|++++|+.+
T Consensus 271 ~~~~~~----~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 313 (321)
T 2qkw_B 271 PNLADK----IRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYA 313 (321)
T ss_dssp SSCTTC----SCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred hhhccc----cCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence 332211 1245567788899999999999999999999999876
No 51
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=2.5e-40 Score=399.89 Aligned_cols=254 Identities=24% Similarity=0.344 Sum_probs=205.3
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
++|++.+.||+|+||+||+|.. .+|+.||+|++... .......+.+|+++|++++|||||++++++.+.+..|+||||
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~-~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP-HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEecc-chhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 5799999999999999999976 46899999998543 333456788999999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCC--CcEEEecccCCcccCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSE--MEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~--~~~kl~DfGla~~~~~~ 975 (1109)
|+||+|.+++.... ..+++..+..++.||+.||+||| +.+|+||||||+|||++.+ +.+||+|||+|+.+...
T Consensus 236 ~~gg~L~~~i~~~~--~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~ 310 (573)
T 3uto_A 236 MSGGELFEKVADEH--NKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK 310 (573)
T ss_dssp CCCCBHHHHHTCTT--SCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTT
T ss_pred cCCCcHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEccCC
Confidence 99999999996532 34899999999999999999999 8999999999999999854 89999999999987543
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||...... ............... .
T Consensus 311 ---~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~-----~~~~~i~~~~~~~~~----~ 378 (573)
T 3uto_A 311 ---QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD-----ETLRNVKSCDWNMDD----S 378 (573)
T ss_dssp ---SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH-----HHHHHHHTTCCCCCS----G
T ss_pred ---CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH-----HHHHHHHhCCCCCCc----c
Confidence 2334468999999999999999999999999999999999999999653221 111111111111100 0
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
. ..... .++.+++.+||+.||++||++.|+++|=+
T Consensus 379 ~-----~~~~s---~~~~dli~~~L~~dp~~R~t~~e~l~Hpw 413 (573)
T 3uto_A 379 A-----FSGIS---EDGKDFIRKLLLADPNTRMTIHQALEHPW 413 (573)
T ss_dssp G-----GTTSC---HHHHHHHHTTSCSSGGGSCCHHHHHHSTT
T ss_pred c-----ccCCC---HHHHHHHHHHccCChhHCcCHHHHhcCcC
Confidence 0 01112 23556778999999999999999999754
No 52
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=1.8e-39 Score=365.09 Aligned_cols=286 Identities=34% Similarity=0.534 Sum_probs=229.8
Q ss_pred CCCcccHHHHHHHhhCCCCC------ceeecccCeEEEEEEeCCCcEEEEEEeeecc---cccChHHHHHHHHHHhcCCC
Q 001275 805 EGPSYLLKQVIEATENLNAK------HVIGRGAHGIVYKASLGPNAVFAVKKLAFRG---HKRGSLSMKREIQTIGKIRH 875 (1109)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~------~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h 875 (1109)
....|.+.++..++.+|... +.||+|+||+||+|.. +++.||||++.... .......+.+|++++++++|
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 89 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH 89 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence 44678899999999999887 8999999999999987 58899999985432 22335678999999999999
Q ss_pred CceeeEeeEEecCCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee
Q 001275 876 RNLVRLEDFWLRKDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL 955 (1109)
Q Consensus 876 ~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll 955 (1109)
|||+++++++...+..++||||+++|+|.+++........+++..++.++.|+++||+||| +.+|+||||||+||++
T Consensus 90 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nili 166 (307)
T 2nru_A 90 ENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILL 166 (307)
T ss_dssp TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEE
T ss_pred CCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEEE
Confidence 9999999999999999999999999999999986555556999999999999999999999 8899999999999999
Q ss_pred CCCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHH
Q 001275 956 DSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIV 1035 (1109)
Q Consensus 956 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~ 1035 (1109)
++++.+||+|||+++...............||+.|+|||.+.+ .++.++||||+|+++|+|++|+.||...... ....
T Consensus 167 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~~~~ 244 (307)
T 2nru_A 167 DEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREP-QLLL 244 (307)
T ss_dssp CTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSS-SBTT
T ss_pred cCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcch-HHHH
Confidence 9999999999999987654433333334579999999997765 5789999999999999999999999754322 2222
Q ss_pred HHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCC
Q 001275 1036 GWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDAS 1101 (1109)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 1101 (1109)
.+..........+.+.++... ..........+.+++.+||+.||++||+++|++++|+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~ 305 (307)
T 2nru_A 245 DIKEEIEDEEKTIEDYIDKKM-----NDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT 305 (307)
T ss_dssp HHHHHHHTTSCCHHHHSCSSC-----SCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC
T ss_pred HHHHHhhhhhhhhhhhccccc-----cccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence 333322222222223323221 1122345567888999999999999999999999998863
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.5e-39 Score=379.86 Aligned_cols=373 Identities=20% Similarity=0.185 Sum_probs=247.2
Q ss_pred cccccccCcccCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCC
Q 001275 241 LVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSE 320 (1109)
Q Consensus 241 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 320 (1109)
++..........+..+..+..+++|++|++++|.+++. | .+..+++|++|++++|++++. | ++.+++|++|++++
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~ 94 (457)
T 3bz5_A 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDS 94 (457)
T ss_dssp HHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCS
T ss_pred HHHHHHHhcCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcC
Confidence 33333344444545555667777888888888887754 3 577777888888888887764 3 67777788888888
Q ss_pred CCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCc
Q 001275 321 NQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLP 400 (1109)
Q Consensus 321 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 400 (1109)
|++++. + ++++++|++|++++|++++ +| ++.+++|++|++++|++++. + +..+++|++|++++|+..+.+
T Consensus 95 N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~- 164 (457)
T 3bz5_A 95 NKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL- 164 (457)
T ss_dssp SCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC-
T ss_pred CCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc-
Confidence 887753 3 7777778888888887775 33 67777788888887777753 2 666777777777777555444
Q ss_pred hhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCc
Q 001275 401 LEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPT 480 (1109)
Q Consensus 401 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~ 480 (1109)
.+..+++|+.|++++|++++ +| ++.+++|++|++++|.+++. .+..+++|++|++++|++++ +| ++.+++
T Consensus 165 -~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~ 234 (457)
T 3bz5_A 165 -DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQ 234 (457)
T ss_dssp -CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTT
T ss_pred -ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCC
Confidence 36667777777777777775 33 66667777777777777654 25566667777777777765 34 556666
Q ss_pred cchhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccc
Q 001275 481 LWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLN 560 (1109)
Q Consensus 481 L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 560 (1109)
|+.|++++|++++.+ +..+++|+.|++++|+ |+.|++++|++.+.+| ++.+++|+.|++++|
T Consensus 235 L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 235 LTYFDCSVNPLTELD--VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHN 296 (457)
T ss_dssp CSEEECCSSCCSCCC--CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTC
T ss_pred CCEEEeeCCcCCCcC--HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECCCC
Confidence 666666666666543 3445556666655542 4556677777666665 456677777777777
Q ss_pred cccccCCccccCCCCccEEEecCccccCCCCcccccccccceeccccccccCCCcchhhhhhhhhhhhcccCcCCCCCCC
Q 001275 561 HVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIPTFISELEKLLELQLGGNQLGGEIPP 640 (1109)
Q Consensus 561 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~ 640 (1109)
...+.+|.. ..+|+.|++++| ++|+.|++++|++++ ++ ++.+++|+.|++++|+++| +|
T Consensus 297 ~~l~~l~~~---~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~-l~- 355 (457)
T 3bz5_A 297 TQLYLLDCQ---AAGITELDLSQN-------------PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD-FS- 355 (457)
T ss_dssp TTCCEEECT---TCCCSCCCCTTC-------------TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB-CT-
T ss_pred cccceeccC---CCcceEechhhc-------------ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC-cc-
Confidence 766666642 244444444443 467777777777775 33 6677777777777777774 22
Q ss_pred CchhhhhhhhhhcccccccccccCcchhhcccCCeEEccCCcccccCCC
Q 001275 641 SIGALQDLSYALNLSKNGLTGRIPSDLEKLSKLEQLDISSNNLTGTLSP 689 (1109)
Q Consensus 641 ~~~~l~~l~~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~~~ 689 (1109)
.+ ..|++++|.++|. +++..|+.+||++|+|+|.||+
T Consensus 356 ------~L-~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 356 ------SV-GKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp ------TG-GGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred ------cc-ccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 23 2466777777765 3566677777777777777765
No 54
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=9e-40 Score=376.78 Aligned_cols=259 Identities=21% Similarity=0.358 Sum_probs=210.0
Q ss_pred hCCCCCceeecccCeEEEEEEe--------CCCcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEEecCC
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL--------GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKD 889 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 889 (1109)
++|.+.+.||+|+||+||+|+. .++..||||++...........+.+|+++++++ +||||+++++++...+
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~ 160 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG 160 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSS
T ss_pred HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCC
Confidence 6788899999999999999975 245679999986554445566799999999999 8999999999999999
Q ss_pred ceeEEEEeccCCCHHHHHhccCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeC
Q 001275 890 CGIIMYRYMENGSLRDVLHSITP-------------PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLD 956 (1109)
Q Consensus 890 ~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~ 956 (1109)
..++||||+++|+|.+++..... ...+++..++.++.|+++||+||| +.+|+||||||+||+++
T Consensus 161 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~ 237 (370)
T 2psq_A 161 PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLVT 237 (370)
T ss_dssp SCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEEEC
Confidence 99999999999999999986542 235899999999999999999999 88999999999999999
Q ss_pred CCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHH
Q 001275 957 SEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIV 1035 (1109)
Q Consensus 957 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~ 1035 (1109)
.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... ..+.
T Consensus 238 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~--~~~~ 315 (370)
T 2psq_A 238 ENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV--EELF 315 (370)
T ss_dssp TTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG--GGHH
T ss_pred CCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCH--HHHH
Confidence 999999999999987655433333334567889999999999999999999999999999999 9999864321 1122
Q ss_pred HHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1036 GWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
..+..... . . .......++.+++.+||+.||++||+++|++++|+++
T Consensus 316 ~~~~~~~~----~-~-------------~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~i 362 (370)
T 2psq_A 316 KLLKEGHR----M-D-------------KPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 362 (370)
T ss_dssp HHHHTTCC----C-C-------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHhcCCC----C-C-------------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11111000 0 0 0011223466788899999999999999999999875
No 55
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=4.7e-40 Score=372.28 Aligned_cols=263 Identities=27% Similarity=0.349 Sum_probs=205.2
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCc----eeEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDC----GIIM 894 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----~~lv 894 (1109)
.+|++.++||+|+||+||+|+.. ++.||||++... ......+.+|+.++++++||||+++++++..... .++|
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv 100 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQ--DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI 100 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGG--GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred hhchhhheecccCceEEEEEEEC-CCEEEEEEeecC--chHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence 67889999999999999999877 799999998432 2334456779999999999999999999987543 5999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC----------CeEEeccCCCCeeeCCCCcEEEe
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDP----------PIVHRDIKPENILLDSEMEPHIS 964 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~----------~ivH~Dlk~~NIll~~~~~~kl~ 964 (1109)
|||+++|+|.++++.. .+++..++.++.|+++||+||| +. +|+||||||+||+++.++.+||+
T Consensus 101 ~e~~~~g~L~~~l~~~----~~~~~~~~~i~~qi~~al~~LH---~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~ 173 (322)
T 3soc_A 101 TAFHEKGSLSDFLKAN----VVSWNELCHIAETMARGLAYLH---EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIA 173 (322)
T ss_dssp EECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHT---CCEEEETTEEECEEECSCCSGGGEEECTTCCEEEC
T ss_pred EecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHH---hhccccccccCCCEEeCCCChHhEEECCCCeEEEc
Confidence 9999999999999763 3899999999999999999999 77 99999999999999999999999
Q ss_pred cccCCcccCCCCCCceeeecccCcccccccccccC-----CCCccCcchhhHHHHHHHHhCCCCCCCCcccccc------
Q 001275 965 DFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTT-----AKSKESDVYSYGVVLLELITRKKALDPSYKERTD------ 1033 (1109)
Q Consensus 965 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~------ 1033 (1109)
|||+++...............||+.|+|||++.+. .++.++|||||||++|||++|+.||.........
T Consensus 174 DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~ 253 (322)
T 3soc_A 174 DFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEI 253 (322)
T ss_dssp CCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHH
T ss_pred cCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhh
Confidence 99999877554433333446799999999998863 4567899999999999999999999754322111
Q ss_pred -----HHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1034 -----IVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1034 -----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
...+........ ..+...... .......++.+++.+||+.||++|||++|+++.|+++
T Consensus 254 ~~~~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l 316 (322)
T 3soc_A 254 GQHPSLEDMQEVVVHKK------KRPVLRDYW---QKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQM 316 (322)
T ss_dssp CSSCCHHHHHHHHTTSC------CCCCCCGGG---GSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ccCCchhhhhhhhhccc------CCCCccccc---cccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 111111110000 000000000 0123445688899999999999999999999999875
No 56
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=5.4e-39 Score=359.01 Aligned_cols=253 Identities=22% Similarity=0.336 Sum_probs=205.8
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
++|+..+.||+|+||+||+|.. .+++.||||++... .......+.+|+.++++++||||+++++++...+..++||||
T Consensus 20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 98 (297)
T 3fxz_A 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQ-QQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98 (297)
T ss_dssp GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGG-GCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecc-cccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence 6799999999999999999975 56899999998543 334456789999999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
+++|+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 99 ~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 171 (297)
T 3fxz_A 99 LAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS 171 (297)
T ss_dssp CTTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred CCCCCHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc
Confidence 9999999999764 3889999999999999999999 88999999999999999999999999999987654322
Q ss_pred CceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchhhh
Q 001275 978 STTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLM 1057 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 1057 (1109)
......||+.|+|||++.+..++.++||||+||++|||++|+.||....... ........ ... ....
T Consensus 172 --~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~---~~~---~~~~---- 238 (297)
T 3fxz_A 172 --KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR-ALYLIATN---GTP---ELQN---- 238 (297)
T ss_dssp --CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHH---CSC---CCSC----
T ss_pred --ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhC---CCC---CCCC----
Confidence 2234679999999999999999999999999999999999999996432111 11111100 000 0000
Q ss_pred HHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1058 EEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1058 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
.......+.+++.+||+.||++||+++|+++|-+-
T Consensus 239 -------~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h~~~ 273 (297)
T 3fxz_A 239 -------PEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFL 273 (297)
T ss_dssp -------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGG
T ss_pred -------ccccCHHHHHHHHHHccCChhHCcCHHHHhhChhh
Confidence 01112345667889999999999999999987543
No 57
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=6e-39 Score=365.05 Aligned_cols=253 Identities=21% Similarity=0.294 Sum_probs=197.9
Q ss_pred hhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
.++|++.+.||+|+||+||+|.. .+|+.||||++...........+.+|++++++++||||+++++++...+..++|||
T Consensus 9 ~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~E 88 (347)
T 3zgw_A 9 LKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVLE 88 (347)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEEe
Confidence 46789999999999999999976 57899999998665544556678999999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSP 976 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~ 976 (1109)
|+++|+|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||++++++.+||+|||++.......
T Consensus 89 ~~~gg~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~ 162 (347)
T 3zgw_A 89 YCPGGELFDYIISQD---RLSEEETRVVFRQIVSAVAYVH---SQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNK 162 (347)
T ss_dssp CCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBC-----
T ss_pred CCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCccHHHEEEcCCCCEEEEeccCcccccCCC
Confidence 999999999997644 3899999999999999999999 8899999999999999999999999999998654322
Q ss_pred CCceeeecccCcccccccccccCCC-CccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 977 ASTTSISVVGTIGYIAPENAFTTAK-SKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 977 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
. .......||+.|+|||++.+..+ +.++||||+||++|||++|+.||..... .................
T Consensus 163 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~-----~~~~~~i~~~~~~~p~~---- 232 (347)
T 3zgw_A 163 D-YHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNV-----MALYKKIMRGKYDVPKW---- 232 (347)
T ss_dssp ----------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHTCCCCCTT----
T ss_pred C-ccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHcCCCCCCCC----
Confidence 1 22334579999999999988876 8999999999999999999999965321 11111111111111110
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
...++.+++.+|++.||++|||++|+++|-+
T Consensus 233 ------------~s~~~~~li~~~L~~dP~~Rps~~eil~hp~ 263 (347)
T 3zgw_A 233 ------------LSPSSILLLQQMLQVDPKKRISMKNLLNHPW 263 (347)
T ss_dssp ------------CCHHHHHHHHHHTCSSGGGSCCHHHHHTCHH
T ss_pred ------------CCHHHHHHHHHHcccCHhHCcCHHHHhcCcc
Confidence 1123556788999999999999999998754
No 58
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=359.82 Aligned_cols=279 Identities=20% Similarity=0.232 Sum_probs=214.0
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCC--ceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKD--CGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lv~ 895 (1109)
++|.+.++||+|+||+||+|... +++.||||++...........+.+|++++++++||||+++++++...+ ..++||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence 56888999999999999999775 489999999965555556678899999999999999999999988765 679999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee----CCCCcEEEecccCCcc
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL----DSEMEPHISDFGIAKL 971 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll----~~~~~~kl~DfGla~~ 971 (1109)
||+++|+|.+++........+++..++.++.|+++||+||| +.+|+||||||+||++ +.++.+||+|||+++.
T Consensus 89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~ 165 (319)
T 4euu_A 89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE 165 (319)
T ss_dssp ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEE
T ss_pred eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCCcee
Confidence 99999999999987655555999999999999999999999 8899999999999999 7788899999999987
Q ss_pred cCCCCCCceeeecccCcccccccccc--------cCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhc
Q 001275 972 LDKSPASTTSISVVGTIGYIAPENAF--------TTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWS 1043 (1109)
Q Consensus 972 ~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~ 1043 (1109)
...... .....||+.|+|||++. +..++.++|||||||++|||++|+.||.+.................
T Consensus 166 ~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~ 242 (319)
T 4euu_A 166 LEDDEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITG 242 (319)
T ss_dssp CCTTCC---BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHH
T ss_pred cCCCCc---eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcC
Confidence 754432 22357999999999876 5778999999999999999999999997543322221111111111
Q ss_pred Cc-ccccccc---chhh--hH--HhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCCC
Q 001275 1044 DT-EEINDIV---DLSL--ME--EMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASVP 1103 (1109)
Q Consensus 1044 ~~-~~~~~~~---d~~~--~~--~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 1103 (1109)
.. .....+. .... .. .............+.+++.+|++.||++||+++|++++..+...+
T Consensus 243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~~~ 310 (319)
T 4euu_A 243 KPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR 310 (319)
T ss_dssp CCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHTC-
T ss_pred CCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHhhc
Confidence 10 0000000 0000 00 000011234455677788899999999999999999999887554
No 59
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=2e-39 Score=364.54 Aligned_cols=259 Identities=29% Similarity=0.391 Sum_probs=199.5
Q ss_pred hhCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
..+|++.+.||+|+||+||+|+.. ++.||||++..... ......+.+|++++++++||||+++++++...+..++|||
T Consensus 36 ~~~y~i~~~lG~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 114 (309)
T 3p86_A 36 WCDLNIKEKIGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTE 114 (309)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEE
T ss_pred hhHceeeeEeecCCCeEEEEEEEC-CCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEe
Confidence 367888999999999999999874 88899999854432 2334578899999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPP--IVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
|+++|+|.+++........+++..++.++.|+++||+||| +.+ |+||||||+||+++.++.+||+|||+++....
T Consensus 115 ~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~ 191 (309)
T 3p86_A 115 YLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH---NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKAS 191 (309)
T ss_dssp CCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHH---TSSSCCCCTTCCGGGEEECTTCCEEECCCC-------
T ss_pred cCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH---cCCCCEECCCCChhhEEEeCCCcEEECCCCCCccccc
Confidence 9999999999987543334899999999999999999999 888 99999999999999999999999999985543
Q ss_pred CCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 975 SPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 975 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
.. .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+.... ......
T Consensus 192 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~--~~~~~~~~~~-~~~~~~----- 261 (309)
T 3p86_A 192 TF--LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPA--QVVAAVGFKC-KRLEIP----- 261 (309)
T ss_dssp ------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHH--HHHHHHHHSC-CCCCCC-----
T ss_pred cc--cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhcC-CCCCCC-----
Confidence 21 2223457999999999999999999999999999999999999999653211 1111111100 000000
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCC
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDAS 1101 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 1101 (1109)
.....++.+++.+||+.||++||+++|+++.|+.+.
T Consensus 262 -----------~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~ 297 (309)
T 3p86_A 262 -----------RNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLI 297 (309)
T ss_dssp -----------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -----------ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 111234667888999999999999999999998763
No 60
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=358.57 Aligned_cols=258 Identities=24% Similarity=0.422 Sum_probs=206.2
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
++|...++||+|+||+||+|... +++.||+|++. .........+.+|++++++++||||+++++++.+.+..++||||
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~-~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 88 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELI-RFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEES-CCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEec-cCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence 57888999999999999999774 68999999873 33445567899999999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
+++|+|.++++... ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 89 ~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 163 (310)
T 3s95_A 89 IKGGTLRGIIKSMD--SQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKT 163 (310)
T ss_dssp CTTCBHHHHHHHCC--TTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC----
T ss_pred cCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceecccccc
Confidence 99999999998743 34899999999999999999999 88999999999999999999999999999987654322
Q ss_pred Cc------------eeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCc
Q 001275 978 ST------------TSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDT 1045 (1109)
Q Consensus 978 ~~------------~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 1045 (1109)
.. ......||+.|+|||++.+..++.++||||||+++|||++|..|+...............
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~------ 237 (310)
T 3s95_A 164 QPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVR------ 237 (310)
T ss_dssp ----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHH------
T ss_pred cccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhh------
Confidence 11 111457999999999999999999999999999999999999988643222111100000
Q ss_pred cccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1046 EEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1046 ~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
........ .....++.+++.+||+.||++||+++|+++.|+.+
T Consensus 238 ---------~~~~~~~~---~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l 280 (310)
T 3s95_A 238 ---------GFLDRYCP---PNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETL 280 (310)
T ss_dssp ---------HHHHHTCC---TTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ---------ccccccCC---CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 00000000 11223466788899999999999999999999875
No 61
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=4.9e-38 Score=355.33 Aligned_cols=265 Identities=22% Similarity=0.309 Sum_probs=212.0
Q ss_pred CcccHHHHHHHhhC----------CCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCC
Q 001275 807 PSYLLKQVIEATEN----------LNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRH 875 (1109)
Q Consensus 807 ~~~~~~~~~~~~~~----------~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h 875 (1109)
+.++.+++..+++. |+..++||+|+||.||+|... +|+.||||++... .......+.+|+.++++++|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h 101 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLR-KQQRRELLFNEVVIMRDYQH 101 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT-TCCSHHHHHHHHHHHTTCCC
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEecc-chhHHHHHHHHHHHHHhCCC
Confidence 45677777777764 666778999999999999876 7999999998543 34456678999999999999
Q ss_pred CceeeEeeEEecCCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee
Q 001275 876 RNLVRLEDFWLRKDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL 955 (1109)
Q Consensus 876 ~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll 955 (1109)
|||+++++++...+..++||||+++|+|.+++... .+++..+..++.|+++||+||| +.+|+||||||+||++
T Consensus 102 ~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~----~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll 174 (321)
T 2c30_A 102 FNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV----RLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSILL 174 (321)
T ss_dssp TTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEE
T ss_pred CCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEE
Confidence 99999999999999999999999999999998753 3899999999999999999999 8899999999999999
Q ss_pred CCCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHH
Q 001275 956 DSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIV 1035 (1109)
Q Consensus 956 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~ 1035 (1109)
+.++.+||+|||+++....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ....
T Consensus 175 ~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~--~~~~ 250 (321)
T 2c30_A 175 TLDGRVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP--VQAM 250 (321)
T ss_dssp CTTCCEEECCCTTCEECCSSSC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHH
T ss_pred CCCCcEEEeeeeeeeecccCcc--ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHH
Confidence 9999999999999987654322 22346799999999999999999999999999999999999999964321 1111
Q ss_pred HHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1036 GWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
..+.... .+.... ......++.+++.+||+.||++||+++|++++-+-
T Consensus 251 ~~~~~~~----------~~~~~~------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~ 298 (321)
T 2c30_A 251 KRLRDSP----------PPKLKN------SHKVSPVLRDFLERMLVRDPQERATAQELLDHPFL 298 (321)
T ss_dssp HHHHHSS----------CCCCTT------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGG
T ss_pred HHHhcCC----------CCCcCc------cccCCHHHHHHHHHHccCChhhCcCHHHHhcChhh
Confidence 1111100 000000 01112345667889999999999999999997654
No 62
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=1.4e-38 Score=360.11 Aligned_cols=250 Identities=23% Similarity=0.267 Sum_probs=204.6
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
.+|.+.+.||+|+||.||+|.. .+|+.||||++.... .......+.+|++++++++||||+++++++...+..++|||
T Consensus 15 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~e 94 (328)
T 3fe3_A 15 GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIME 94 (328)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred CCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEE
Confidence 5789999999999999999977 679999999985543 22345578899999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSP 976 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~ 976 (1109)
|+++|+|.+++...+ .+++..+..++.|+++|++||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 95 ~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 168 (328)
T 3fe3_A 95 YASGGEVFDYLVAHG---RMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG 168 (328)
T ss_dssp CCTTCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC
T ss_pred CCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCC
Confidence 999999999997654 3899999999999999999999 8899999999999999999999999999998664432
Q ss_pred CCceeeecccCcccccccccccCCCC-ccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 977 ASTTSISVVGTIGYIAPENAFTTAKS-KESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 977 ~~~~~~~~~gt~~y~aPE~~~~~~~~-~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
......||+.|+|||++.+..++ .++||||+||++|||++|+.||..... ................
T Consensus 169 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-----~~~~~~i~~~~~~~p~----- 235 (328)
T 3fe3_A 169 ---KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL-----KELRERVLRGKYRIPF----- 235 (328)
T ss_dssp ---GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHCCCCCCT-----
T ss_pred ---ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhCCCCCCC-----
Confidence 22346799999999999988874 899999999999999999999965321 1111111111110100
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
....++.+++.+|++.||++|||++|+++|-+
T Consensus 236 -----------~~s~~~~~li~~~L~~dP~~R~t~~eil~h~~ 267 (328)
T 3fe3_A 236 -----------YMSTDCENLLKRFLVLNPIKRGTLEQIMKDRW 267 (328)
T ss_dssp -----------TSCHHHHHHHHHHCCSSTTTSCCHHHHTTCTT
T ss_pred -----------CCCHHHHHHHHHHCCCChhHCcCHHHHhcCHh
Confidence 11234556788999999999999999999854
No 63
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.4e-39 Score=364.61 Aligned_cols=257 Identities=26% Similarity=0.392 Sum_probs=205.3
Q ss_pred hCCCCCceeecccCeEEEEEEeC----CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG----PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 894 (1109)
.+|.+.+.||+|+||+||+|... .+..||||++...........+.+|++++++++||||+++++++...+..++|
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 128 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV 128 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence 56788899999999999999874 45569999986554555567899999999999999999999999999999999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
|||+++|+|.++++... ..+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 129 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 203 (325)
T 3kul_A 129 TEYMENGSLDTFLRTHD--GQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLED 203 (325)
T ss_dssp EECCTTCBHHHHHHTTT--TCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEECC-
T ss_pred eeCCCCCcHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCccccccc
Confidence 99999999999997543 35899999999999999999999 88999999999999999999999999999987754
Q ss_pred CCCC-ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 975 SPAS-TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 975 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
.... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... +....+ ..... ..
T Consensus 204 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~---~~~~~-~~--- 274 (325)
T 3kul_A 204 DPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNR--DVISSV---EEGYR-LP--- 274 (325)
T ss_dssp ---CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHH--HHHHHH---HTTCC-CC---
T ss_pred CccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHH--HHHHHH---HcCCC-CC---
Confidence 3222 22233456889999999998999999999999999999999 99998643211 111111 11100 00
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.......++.+++.+||+.||++||+++|+++.|+.+
T Consensus 275 -----------~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l 311 (325)
T 3kul_A 275 -----------APMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDAL 311 (325)
T ss_dssp -----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -----------CCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 0011223566788899999999999999999999876
No 64
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=4.7e-39 Score=363.86 Aligned_cols=257 Identities=23% Similarity=0.314 Sum_probs=204.1
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
++|++.+.||+|+||+||+|... +++.||||++...........+.+|+.++++++||||+++++++...+..++||||
T Consensus 7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 86 (323)
T 3tki_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 86 (323)
T ss_dssp TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEc
Confidence 57889999999999999999765 78999999986554444456788999999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.+.....
T Consensus 87 ~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 160 (323)
T 3tki_A 87 CSGGELFDRIEPDI---GMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160 (323)
T ss_dssp CTTEEGGGGSBTTT---BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred CCCCcHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccCCc
Confidence 99999999987543 4899999999999999999999 89999999999999999999999999999986643332
Q ss_pred CceeeecccCcccccccccccCCC-CccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchhh
Q 001275 978 STTSISVVGTIGYIAPENAFTTAK-SKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSL 1056 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 1056 (1109)
........||+.|+|||++.+..+ +.++||||+||++|||++|+.||............+... .... .+
T Consensus 161 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~----~~~~----~~-- 230 (323)
T 3tki_A 161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK----KTYL----NP-- 230 (323)
T ss_dssp ECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTT----CTTS----TT--
T ss_pred ccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcc----cccC----Cc--
Confidence 222334689999999999988776 789999999999999999999997543322222221111 0000 00
Q ss_pred hHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1057 MEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1057 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
......++.+++.+|++.||++|||++|++++-+-
T Consensus 231 --------~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h~~~ 265 (323)
T 3tki_A 231 --------WKKIDSAPLALLHKILVENPSARITIPDIKKDRWY 265 (323)
T ss_dssp --------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTT
T ss_pred --------cccCCHHHHHHHHHHccCChhhCcCHHHHhhChhh
Confidence 01112345568889999999999999999988653
No 65
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=2.2e-39 Score=373.06 Aligned_cols=269 Identities=22% Similarity=0.300 Sum_probs=212.8
Q ss_pred cHHHHHHHhhCCCCCceeecccCeEEEEEEe------CCCcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEe
Q 001275 810 LLKQVIEATENLNAKHVIGRGAHGIVYKASL------GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLE 882 (1109)
Q Consensus 810 ~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~ 882 (1109)
.........++|.+.+.||+|+||.||+|++ .+++.||||++.........+.+.+|++++.++ +||||++++
T Consensus 13 ~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~ 92 (359)
T 3vhe_A 13 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 92 (359)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeee
Confidence 3444445568899999999999999999963 346889999996544444556799999999999 799999999
Q ss_pred eEEecCCc-eeEEEEeccCCCHHHHHhccCC-------------------------------------------------
Q 001275 883 DFWLRKDC-GIIMYRYMENGSLRDVLHSITP------------------------------------------------- 912 (1109)
Q Consensus 883 ~~~~~~~~-~~lv~e~~~~gsL~~~l~~~~~------------------------------------------------- 912 (1109)
+++...+. .++||||+++|+|.++++....
T Consensus 93 ~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (359)
T 3vhe_A 93 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKS 172 (359)
T ss_dssp EEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-------------------------------------------
T ss_pred eeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccc
Confidence 99987654 8999999999999999986532
Q ss_pred --------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCCC
Q 001275 913 --------------PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPAS 978 (1109)
Q Consensus 913 --------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~ 978 (1109)
...+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++........
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 249 (359)
T 3vhe_A 173 LSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 249 (359)
T ss_dssp -----------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTC
T ss_pred cchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccc
Confidence 122889999999999999999999 889999999999999999999999999999876554444
Q ss_pred ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchhhh
Q 001275 979 TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLM 1057 (1109)
Q Consensus 979 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 1057 (1109)
.......||+.|+|||++.+..++.++|||||||++|||++ |+.||...... ......+.... ....
T Consensus 250 ~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~-~~~~~~~~~~~--~~~~--------- 317 (359)
T 3vhe_A 250 VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFCRRLKEGT--RMRA--------- 317 (359)
T ss_dssp EEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS-HHHHHHHHHTC--CCCC---------
T ss_pred hhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchh-HHHHHHHHcCC--CCCC---------
Confidence 44445678999999999999999999999999999999998 99998653221 11111111100 0000
Q ss_pred HHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1058 EEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1058 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
......++.+++.+||+.||++||+++|++++|+++
T Consensus 318 -------~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 353 (359)
T 3vhe_A 318 -------PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 353 (359)
T ss_dssp -------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -------CCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence 001123466788899999999999999999999875
No 66
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=2.1e-39 Score=375.13 Aligned_cols=257 Identities=22% Similarity=0.276 Sum_probs=205.3
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
++|...+.||+|+||+||+|... +++.||||++..........++.+|++++++++||||+++++++...+..++||||
T Consensus 114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 193 (377)
T 3cbl_A 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMEL 193 (377)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEc
Confidence 57888899999999999999886 78999999985443333445688999999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
+++|+|.++++... ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 194 ~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~ 268 (377)
T 3cbl_A 194 VQGGDFLTFLRTEG--ARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVY 268 (377)
T ss_dssp CTTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEE
T ss_pred CCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCce
Confidence 99999999997643 24889999999999999999999 89999999999999999999999999999986543211
Q ss_pred CceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchhh
Q 001275 978 STTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSL 1056 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 1056 (1109)
........+++.|+|||.+.+..++.++|||||||++|||++ |+.||..... ......+.. .... ..
T Consensus 269 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~--~~~~~~~~~----~~~~---~~--- 336 (377)
T 3cbl_A 269 AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSN--QQTREFVEK----GGRL---PC--- 336 (377)
T ss_dssp ECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCH--HHHHHHHHT----TCCC---CC---
T ss_pred eecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHc----CCCC---CC---
Confidence 111112345778999999998899999999999999999998 8888864321 111111111 0000 00
Q ss_pred hHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1057 MEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1057 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
......++.+++.+||+.||++|||++|+++.|+++
T Consensus 337 --------~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 372 (377)
T 3cbl_A 337 --------PELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSI 372 (377)
T ss_dssp --------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred --------CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHH
Confidence 011223466788899999999999999999999875
No 67
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.3e-37 Score=369.00 Aligned_cols=345 Identities=28% Similarity=0.376 Sum_probs=194.0
Q ss_pred CCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCccccccccccee
Q 001275 93 HLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYV 172 (1109)
Q Consensus 93 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 172 (1109)
.+++|+.|+++++.+.. +| .+..+++|++|+|++|.+++..| +.++++|++|+|++|.+++..| +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 45667777777777763 44 36677777777777777775433 7777777777777777764333 6667777777
Q ss_pred cccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccC
Q 001275 173 FLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLE 252 (1109)
Q Consensus 173 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 252 (1109)
++++|++++..+ ++.+++|++|++++|.+++. + .++.+++|++|+++ |.+.+.. .+.++++|++|++++|+++
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 777777765432 66677777777777766642 2 36666677777764 4444332 2666666666666666665
Q ss_pred CcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccc
Q 001275 253 GRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELG 332 (1109)
Q Consensus 253 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 332 (1109)
+.. .+..+++|++|++++|.+++..+ ++.+++|+.|++++|++++. ..+..+++|+.|++++|.+++..| +.
T Consensus 191 ~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 191 DIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp CCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 432 24555566666666665554333 44555555555555555532 234555555555555555554332 55
Q ss_pred cccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeE
Q 001275 333 KCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNI 412 (1109)
Q Consensus 333 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 412 (1109)
.+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++..| +..+++|+.|
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 55555555555555553322 4555555555555555554222 4445555555555555554333 4445555555
Q ss_pred EccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccc
Q 001275 413 SLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFH 468 (1109)
Q Consensus 413 ~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~ 468 (1109)
++++|++++. ..++.+++|++|++++|.+++..| +..+++|+.|++++|+++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 5555555433 234444444444444444444333 344444444444444444
No 68
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=7.4e-39 Score=366.26 Aligned_cols=265 Identities=26% Similarity=0.397 Sum_probs=211.0
Q ss_pred hhCCCCCceeecccCeEEEEEEeC------CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCce
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG------PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCG 891 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 891 (1109)
.++|...+.||+|+||.||+|+.. +++.||||++...........+.+|++++++++||||+++++++...+..
T Consensus 46 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 125 (343)
T 1luf_A 46 RNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPM 125 (343)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSC
T ss_pred HHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCce
Confidence 478999999999999999999774 34889999986554444566799999999999999999999999999999
Q ss_pred eEEEEeccCCCHHHHHhccCC---------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCC
Q 001275 892 IIMYRYMENGSLRDVLHSITP---------------------PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKP 950 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~ 950 (1109)
++||||+++|+|.+++..... ...+++..++.++.|+++||+||| +.+|+||||||
T Consensus 126 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp 202 (343)
T 1luf_A 126 CLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLAT 202 (343)
T ss_dssp EEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSG
T ss_pred EEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCc
Confidence 999999999999999976432 146899999999999999999999 88999999999
Q ss_pred CCeeeCCCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCcc
Q 001275 951 ENILLDSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYK 1029 (1109)
Q Consensus 951 ~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~ 1029 (1109)
+||++++++.+||+|||+++...............+|+.|+|||.+.+..++.++||||||+++|||++ |+.||.....
T Consensus 203 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~ 282 (343)
T 1luf_A 203 RNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAH 282 (343)
T ss_dssp GGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred ceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCCh
Confidence 999999999999999999987644333233344578999999999999999999999999999999999 9999864321
Q ss_pred ccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCCCCC
Q 001275 1030 ERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASVPMT 1105 (1109)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~ 1105 (1109)
. .. ........ .... ......++.+++.+||+.||++||++.|++++|+++.....
T Consensus 283 ~--~~---~~~~~~~~--~~~~-------------~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~ 338 (343)
T 1luf_A 283 E--EV---IYYVRDGN--ILAC-------------PENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE 338 (343)
T ss_dssp H--HH---HHHHHTTC--CCCC-------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred H--HH---HHHHhCCC--cCCC-------------CCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence 1 11 11111110 0000 01112346678889999999999999999999999865544
No 69
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=9.4e-39 Score=368.50 Aligned_cols=257 Identities=27% Similarity=0.410 Sum_probs=195.9
Q ss_pred hCCCCCceeecccCeEEEEEEeC----CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG----PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 894 (1109)
.+|...+.||+|+||+||+|+.. ++..||||++..........++.+|++++++++||||+++++++...+..++|
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 124 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV 124 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence 57899999999999999999764 57789999986544445566899999999999999999999999999999999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
|||+++|+|.++++... ..+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 125 ~e~~~~~sL~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 199 (373)
T 2qol_A 125 TEYMENGSLDSFLRKHD--AQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLED 199 (373)
T ss_dssp EECCTTCBHHHHHHTTT--TCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred EeCCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCcccccccc
Confidence 99999999999997643 35899999999999999999999 88999999999999999999999999999987654
Q ss_pred CCCC-ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 975 SPAS-TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 975 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
.... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... .+....+.. .. ..
T Consensus 200 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~--~~~~~~i~~---~~-~~---- 269 (373)
T 2qol_A 200 DPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSN--QDVIKAVDE---GY-RL---- 269 (373)
T ss_dssp --------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCH--HHHHHHHHT---TE-EC----
T ss_pred CCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHc---CC-CC----
Confidence 3221 12223356788999999999999999999999999999998 9999864321 111111111 00 00
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
........++.+++.+||+.||++||+++|+++.|+++
T Consensus 270 ----------~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~ 307 (373)
T 2qol_A 270 ----------PPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKL 307 (373)
T ss_dssp ----------CCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ----------CCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHH
Confidence 00011234567788899999999999999999999765
No 70
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.5e-37 Score=366.48 Aligned_cols=343 Identities=27% Similarity=0.379 Sum_probs=248.0
Q ss_pred cEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccc
Q 001275 72 NVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLY 151 (1109)
Q Consensus 72 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~ 151 (1109)
+++.+++.++++.. ++ .+..+++|++|+|++|.+++..| ++.+++|++|++++|.+++..| ++++++|++|+|+
T Consensus 47 ~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 46677777776654 33 46777788888888887775543 7777888888888887775443 7778888888888
Q ss_pred cccccccCCcccccccccceecccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcC
Q 001275 152 GNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFL 231 (1109)
Q Consensus 152 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 231 (1109)
+|.+++. |. +.++++|++|++++|.+++. + .++.+++|++|+++ |.+.+..+ ++++++|++|++++|.+++.
T Consensus 121 ~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 121 NNQITDI-DP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDI- 192 (466)
T ss_dssp SSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred CCCCCCC-hH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCC-
Confidence 8877743 32 77777888888888877753 3 47777788888875 45554332 77777888888888877754
Q ss_pred chhcccccccccccccCcccCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccc
Q 001275 232 PESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLA 311 (1109)
Q Consensus 232 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 311 (1109)
..+..+++|++|++++|++++..+ +..+++|++|++++|++++. +.+..+++|+.|++++|.+++..+ +..++
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred -hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCC
Confidence 347777788888888887776655 56677788888888877753 356777788888888888776544 67777
Q ss_pred cccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeecc
Q 001275 312 RLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVY 391 (1109)
Q Consensus 312 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 391 (1109)
+|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..| +..+++|+.|+++
T Consensus 266 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence 88888888887775433 7777788888888888775433 6777788888888888776544 6677788888888
Q ss_pred CCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccc
Q 001275 392 NNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTG 445 (1109)
Q Consensus 392 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~ 445 (1109)
+|.+++. ..+..+++|+.|++++|++++..| +..+++|++|++++|.+++
T Consensus 340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 8877754 457777788888888888877666 6777778888888888775
No 71
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=3.2e-38 Score=359.13 Aligned_cols=255 Identities=23% Similarity=0.406 Sum_probs=202.3
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCC-------
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKD------- 889 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------- 889 (1109)
.++|+..+.||+|+||.||+|+.. +++.||||++.........+.+.+|++++++++||||++++++|.+..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 357889999999999999999875 789999999976555556678999999999999999999999986543
Q ss_pred --------------------------------------------------ceeEEEEeccCCCHHHHHhccCCCCCCCHH
Q 001275 890 --------------------------------------------------CGIIMYRYMENGSLRDVLHSITPPPTLEWN 919 (1109)
Q Consensus 890 --------------------------------------------------~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~ 919 (1109)
..++||||+++|+|.+++.........++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~ 164 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG 164 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence 279999999999999999886665667888
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCCC----------ceeeecccCcc
Q 001275 920 VRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPAS----------TTSISVVGTIG 989 (1109)
Q Consensus 920 ~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~----------~~~~~~~gt~~ 989 (1109)
.++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++........ .......||+.
T Consensus 165 ~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 241 (332)
T 3qd2_B 165 VCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL 241 (332)
T ss_dssp HHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred HHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence 89999999999999999 889999999999999999999999999999877544211 12234579999
Q ss_pred cccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHH
Q 001275 990 YIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQV 1069 (1109)
Q Consensus 990 y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 1069 (1109)
|+|||++.+..++.++||||+||++|||++|..|+. +. .......... ..+ .......
T Consensus 242 y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~----~~---~~~~~~~~~~-------~~~--------~~~~~~~ 299 (332)
T 3qd2_B 242 YMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQM----ER---VRIITDVRNL-------KFP--------LLFTQKY 299 (332)
T ss_dssp GSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHH----HH---HHHHHHHHTT-------CCC--------HHHHHHC
T ss_pred ccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChh----HH---HHHHHHhhcc-------CCC--------cccccCC
Confidence 999999999999999999999999999999876531 10 1111110000 000 0112223
Q ss_pred HHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1070 IDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1070 ~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
.++.+++.+||+.||++||+++|+++|-
T Consensus 300 ~~~~~li~~~l~~~p~~Rps~~~~l~~~ 327 (332)
T 3qd2_B 300 PQEHMMVQDMLSPSPTERPEATDIIENA 327 (332)
T ss_dssp HHHHHHHHHHHCSSGGGSCCHHHHHHST
T ss_pred hhHHHHHHHHccCCCCcCCCHHHHhhch
Confidence 4556788899999999999999999864
No 72
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.4e-38 Score=364.20 Aligned_cols=265 Identities=22% Similarity=0.312 Sum_probs=208.7
Q ss_pred hhCCCCCceeecccCeEEEEEEe------CCCcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCc
Q 001275 818 TENLNAKHVIGRGAHGIVYKASL------GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDC 890 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 890 (1109)
.++|...+.||+|+||+||+|.. .+++.||||++...........+.+|+++++++ +||||+++++++...+.
T Consensus 44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~ 123 (344)
T 1rjb_A 44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP 123 (344)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCc
Confidence 46788899999999999999975 345689999996555555667899999999999 89999999999999999
Q ss_pred eeEEEEeccCCCHHHHHhccCCC--------------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCC
Q 001275 891 GIIMYRYMENGSLRDVLHSITPP--------------------PTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKP 950 (1109)
Q Consensus 891 ~~lv~e~~~~gsL~~~l~~~~~~--------------------~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~ 950 (1109)
.++||||+++|+|.+++...... ..+++..++.++.|+++||+||| +.+|+||||||
T Consensus 124 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp 200 (344)
T 1rjb_A 124 IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAA 200 (344)
T ss_dssp CEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCSG
T ss_pred cEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCh
Confidence 99999999999999999865421 24799999999999999999999 88999999999
Q ss_pred CCeeeCCCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCcc
Q 001275 951 ENILLDSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYK 1029 (1109)
Q Consensus 951 ~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~ 1029 (1109)
+||+++.++.+||+|||+++...............||+.|+|||.+.+..++.++|||||||++|||+| |+.||.....
T Consensus 201 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~ 280 (344)
T 1rjb_A 201 RNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV 280 (344)
T ss_dssp GGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC
T ss_pred hhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCc
Confidence 999999999999999999987654443333344568889999999999999999999999999999998 9999865422
Q ss_pred ccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCCCC
Q 001275 1030 ERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASVPM 1104 (1109)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 1104 (1109)
. ......+..... . . . ......++.+++.+||+.||++||+++|++++|+......
T Consensus 281 ~-~~~~~~~~~~~~----~-~--~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~ 336 (344)
T 1rjb_A 281 D-ANFYKLIQNGFK----M-D--Q-----------PFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADA 336 (344)
T ss_dssp S-HHHHHHHHTTCC----C-C--C-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred H-HHHHHHHhcCCC----C-C--C-----------CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHH
Confidence 1 111111111100 0 0 0 0111234667888999999999999999999999875543
No 73
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=369.03 Aligned_cols=259 Identities=22% Similarity=0.360 Sum_probs=210.6
Q ss_pred hCCCCCceeecccCeEEEEEEe--------CCCcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEEecCC
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL--------GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKD 889 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 889 (1109)
++|.+.++||+|+||+||+|.. ..++.||||++...........+.+|+++++++ +||||+++++++...+
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~ 148 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG 148 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCC
Confidence 6788899999999999999975 234679999986555555567899999999999 9999999999999999
Q ss_pred ceeEEEEeccCCCHHHHHhccCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeC
Q 001275 890 CGIIMYRYMENGSLRDVLHSITP-------------PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLD 956 (1109)
Q Consensus 890 ~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~ 956 (1109)
..++||||+++|+|.+++..... ...+++..++.++.|++.||+||| +.+|+||||||+||+++
T Consensus 149 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~ 225 (382)
T 3tt0_A 149 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVT 225 (382)
T ss_dssp SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEC
T ss_pred ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceEEEc
Confidence 99999999999999999986542 235899999999999999999999 88999999999999999
Q ss_pred CCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHH
Q 001275 957 SEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIV 1035 (1109)
Q Consensus 957 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~ 1035 (1109)
+++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... ....
T Consensus 226 ~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~--~~~~ 303 (382)
T 3tt0_A 226 EDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV--EELF 303 (382)
T ss_dssp TTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHH
T ss_pred CCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH--HHHH
Confidence 999999999999987755433333344567899999999999999999999999999999999 9999864321 1111
Q ss_pred HHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1036 GWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
..+.. ... . . . ......++.+++.+||+.||++||+++|++++|+++
T Consensus 304 ~~~~~---~~~-~-~--~-----------~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 350 (382)
T 3tt0_A 304 KLLKE---GHR-M-D--K-----------PSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 350 (382)
T ss_dssp HHHHT---TCC-C-C--C-----------CSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHc---CCC-C-C--C-----------CccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11111 100 0 0 0 011123466788899999999999999999999876
No 74
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=2.6e-38 Score=348.19 Aligned_cols=256 Identities=21% Similarity=0.301 Sum_probs=208.7
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEec
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRYM 898 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 898 (1109)
++|+..+.||+|+||+||+|+..++..||+|++... .....++.+|++++++++||||+++++++...+..++||||+
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (268)
T 3sxs_A 8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEG--SMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85 (268)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBT--TBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hheeeeeeeccCCCceEEEEEecCceeEEEEEeccC--CCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence 578889999999999999999998889999998543 334567899999999999999999999999999999999999
Q ss_pred cCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCCC
Q 001275 899 ENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPAS 978 (1109)
Q Consensus 899 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~ 978 (1109)
++|+|.+++.... ..+++..++.++.|+++|++||| +.+|+||||||+||+++.++.+||+|||+++...... .
T Consensus 86 ~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~-~ 159 (268)
T 3sxs_A 86 SNGCLLNYLRSHG--KGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ-Y 159 (268)
T ss_dssp TTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC-E
T ss_pred CCCcHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecchhh-h
Confidence 9999999997643 24899999999999999999999 8899999999999999999999999999998765432 2
Q ss_pred ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchhhh
Q 001275 979 TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLM 1057 (1109)
Q Consensus 979 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 1057 (1109)
.......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... ........... ...+.
T Consensus 160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-----~~~~~~~~~~~----~~~~~-- 228 (268)
T 3sxs_A 160 VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNS-----EVVLKVSQGHR----LYRPH-- 228 (268)
T ss_dssp EECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHH-----HHHHHHHTTCC----CCCCT--
T ss_pred hcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChH-----HHHHHHHcCCC----CCCCC--
Confidence 22334566788999999998899999999999999999999 99998643221 11111111100 00000
Q ss_pred HHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCC
Q 001275 1058 EEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASV 1102 (1109)
Q Consensus 1058 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 1102 (1109)
....++.+++.+||+.||++||+++|++++|+.+..
T Consensus 229 ---------~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (268)
T 3sxs_A 229 ---------LASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLRE 264 (268)
T ss_dssp ---------TSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred ---------cChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence 012246678889999999999999999999998743
No 75
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=1.4e-38 Score=361.04 Aligned_cols=256 Identities=23% Similarity=0.356 Sum_probs=198.6
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcE----EEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAV----FAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~----vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 893 (1109)
++|+..++||+|+||+||+|.+. +++. ||+|.+...........+.+|++++++++||||++++++|.... .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~ 93 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEE
Confidence 56888999999999999999764 3443 58887755555566778999999999999999999999998754 789
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
|+||+++|+|.+++.... ..+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 94 v~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~ 168 (327)
T 3poz_A 94 ITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168 (327)
T ss_dssp EEECCTTCBHHHHHHHST--TSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHT
T ss_pred EEEecCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCCCCEEEccCcceeEcc
Confidence 999999999999998743 34899999999999999999999 8899999999999999999999999999998776
Q ss_pred CCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
............+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... ......+.... ...
T Consensus 169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~~~~~~----~~~--- 239 (327)
T 3poz_A 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA--SEISSILEKGE----RLP--- 239 (327)
T ss_dssp TTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHHHHHTTC----CCC---
T ss_pred CCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCH--HHHHHHHHcCC----CCC---
Confidence 5544444445567889999999999999999999999999999999 9999865422 12222211110 000
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
. ......++.+++.+||+.||++||+++|++++|+.+
T Consensus 240 ~-----------~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~ 276 (327)
T 3poz_A 240 Q-----------PPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM 276 (327)
T ss_dssp C-----------CTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHH
T ss_pred C-----------CccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 0 011223567788899999999999999999999764
No 76
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.3e-38 Score=350.75 Aligned_cols=254 Identities=22% Similarity=0.353 Sum_probs=206.9
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEec
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRYM 898 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 898 (1109)
++|+..+.||+|+||+||+|...+++.||+|++... .....++.+|++++++++||||+++++++.+.+..++||||+
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 87 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG--AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 87 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTT--SBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEeccc--ccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeC
Confidence 578889999999999999999988999999998533 334567999999999999999999999999999999999999
Q ss_pred cCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCCC
Q 001275 899 ENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPAS 978 (1109)
Q Consensus 899 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~ 978 (1109)
++|+|.+++.... ..+++..++.++.|+++|++||| +.+|+||||||+||+++.++.+||+|||+++...... .
T Consensus 88 ~~~~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~ 161 (269)
T 4hcu_A 88 EHGCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-Y 161 (269)
T ss_dssp TTCBHHHHHHTTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH-H
T ss_pred CCCcHHHHHHhcC--cccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEeccccccccccccc-c
Confidence 9999999997643 35899999999999999999999 8899999999999999999999999999998664321 1
Q ss_pred ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchhhh
Q 001275 979 TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLM 1057 (1109)
Q Consensus 979 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 1057 (1109)
.......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... ........... ...+
T Consensus 162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~-----~~~~~~~~~~~----~~~~--- 229 (269)
T 4hcu_A 162 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS-----EVVEDISTGFR----LYKP--- 229 (269)
T ss_dssp HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-----HHHHHHHTTCC----CCCC---
T ss_pred ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHH-----HHHHHHhcCcc----CCCC---
Confidence 12223467788999999999999999999999999999999 89998643211 11111111100 0000
Q ss_pred HHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1058 EEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1058 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.....++.+++.+||+.||++||+++|++++|+++
T Consensus 230 --------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l 264 (269)
T 4hcu_A 230 --------RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEI 264 (269)
T ss_dssp --------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred --------CcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHH
Confidence 01123466788899999999999999999999875
No 77
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=1.1e-37 Score=357.00 Aligned_cols=255 Identities=20% Similarity=0.284 Sum_probs=205.3
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccccc-----ChHHHHHHHHHHhcCCCCceeeEeeEEecCCce
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKR-----GSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCG 891 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 891 (1109)
.++|.+.+.||+|+||+||+|... +|+.||+|.+....... ....+.+|+.++++++||||+++++++...+..
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 367889999999999999999765 68999999996543322 346789999999999999999999999999999
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCC----cEEEeccc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEM----EPHISDFG 967 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~----~~kl~DfG 967 (1109)
++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||
T Consensus 91 ~lv~e~~~gg~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~DFG 164 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQKE---SLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG 164 (361)
T ss_dssp EEEEECCCSCBHHHHHTTCS---CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCS
T ss_pred EEEEEcCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEEecC
Confidence 99999999999999997533 4899999999999999999999 88999999999999998877 79999999
Q ss_pred CCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccc
Q 001275 968 IAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEE 1047 (1109)
Q Consensus 968 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1109)
+++....... .....||+.|+|||++.+..++.++||||+||++|+|++|+.||...... ............
T Consensus 165 ~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~-----~~~~~i~~~~~~ 236 (361)
T 2yab_A 165 LAHEIEDGVE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ-----ETLANITAVSYD 236 (361)
T ss_dssp SCEECCTTCC---CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH-----HHHHHHHTTCCC
T ss_pred CceEcCCCCc---cccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHH-----HHHHHHHhcCCC
Confidence 9987654322 23457999999999999999999999999999999999999999653211 111111111000
Q ss_pred cccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1048 INDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1048 ~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
. +... . .....++.+++.+|++.||++|||++|+++|-+
T Consensus 237 ~----~~~~-----~---~~~s~~~~~li~~~L~~dP~~R~t~~e~l~hp~ 275 (361)
T 2yab_A 237 F----DEEF-----F---SQTSELAKDFIRKLLVKETRKRLTIQEALRHPW 275 (361)
T ss_dssp C----CHHH-----H---TTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSTT
T ss_pred C----Cchh-----c---cCCCHHHHHHHHHHCCCChhHCcCHHHHhcCcC
Confidence 0 1000 0 111234566788999999999999999998754
No 78
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=1.4e-37 Score=352.72 Aligned_cols=251 Identities=21% Similarity=0.258 Sum_probs=204.6
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|+..+.||+|+||+||+|+.. +++.||+|++.... .......+.+|++++++++||||+++++++...+..++||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 57888999999999999999775 68999999986432 2344567889999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 85 E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 158 (337)
T 1o6l_A 85 EYANGGELFFHLSRER---VFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISD 158 (337)
T ss_dssp ECCTTCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCT
T ss_pred eCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhcccC
Confidence 9999999999997643 4899999999999999999999 889999999999999999999999999999864332
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
. ......+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ...............
T Consensus 159 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~~i~~~~~~~p------ 225 (337)
T 1o6l_A 159 G--ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----ERLFELILMEEIRFP------ 225 (337)
T ss_dssp T--CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHCCCCCC------
T ss_pred C--CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH-----HHHHHHHHcCCCCCC------
Confidence 2 122346899999999999999999999999999999999999999964321 111111111110000
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHHhh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRP-----NMRDVVRQLV 1098 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~evl~~L~ 1098 (1109)
... ..++.+++.+|++.||++|| +++|+++|-.
T Consensus 226 -------~~~---s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h~~ 263 (337)
T 1o6l_A 226 -------RTL---SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRF 263 (337)
T ss_dssp -------TTS---CHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGG
T ss_pred -------CCC---CHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcCCC
Confidence 011 23456677899999999999 8999998754
No 79
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=2.8e-38 Score=354.91 Aligned_cols=262 Identities=26% Similarity=0.372 Sum_probs=199.7
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
++|.+.++||+|+||+||+|.... .+|+|.++... .......+.+|++++++++||||+++++++. .+..++||||
T Consensus 36 ~~~~~~~~lG~G~~g~Vy~~~~~~--~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e~ 112 (307)
T 3lb7_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQW 112 (307)
T ss_dssp TSCCEEEEEEECSSCEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred cceEEEeEecCCCCeEEEEEEECC--EEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEec
Confidence 578889999999999999998653 57888875432 2233467899999999999999999999875 5568999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||++++++.+||+|||+++.......
T Consensus 113 ~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~~ 187 (307)
T 3lb7_A 113 CEGSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp CSSCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCSSSEEECTTSCEEECCCCSSCC------
T ss_pred CCCCcHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCChhhEEEcCCCCEEEccCCCceecccccc
Confidence 99999999997543 35899999999999999999999 88999999999999999999999999999986644333
Q ss_pred CceeeecccCcccccccccc---cCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 978 STTSISVVGTIGYIAPENAF---TTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
........||+.|+|||++. +..++.++|||||||++|||++|+.||...... ......+...... ......
T Consensus 188 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~-~~~~~~~~~~~~~-~~~~~~--- 262 (307)
T 3lb7_A 188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR-DQIIFMVGRGYAS-PDLSKL--- 262 (307)
T ss_dssp ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH-HHHHHHHHHTCCC-CCSTTS---
T ss_pred cccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcH-HHHHHHHhcCCCC-cchhhh---
Confidence 33334467999999999886 667899999999999999999999999654221 1111111111100 000000
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCCC
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASVP 1103 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 1103 (1109)
......++.+++.+||+.||++||++.|++++++.+...
T Consensus 263 ----------~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~ 301 (307)
T 3lb7_A 263 ----------YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS 301 (307)
T ss_dssp ----------CSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred ----------hcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhh
Confidence 011224566788899999999999999999999887443
No 80
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=9e-38 Score=351.60 Aligned_cols=268 Identities=22% Similarity=0.319 Sum_probs=203.3
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeeccccc-ChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKR-GSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
++|++.++||+|+||+||+|+..+++.||+|++....... ....+.+|++++++++||||+++++++...+..++||||
T Consensus 21 ~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 100 (311)
T 3niz_A 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEF 100 (311)
T ss_dssp CEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEEC
T ss_pred hhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcC
Confidence 6788999999999999999999889999999986543332 245788999999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
+++ +|.+++.... ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 101 ~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~ 174 (311)
T 3niz_A 101 MEK-DLKKVLDENK--TGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVR 174 (311)
T ss_dssp CSE-EHHHHHHTCT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC
T ss_pred CCC-CHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecCCCcc
Confidence 985 8888887543 34899999999999999999999 88999999999999999999999999999987643322
Q ss_pred CceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCc-ccccccc---
Q 001275 978 STTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDT-EEINDIV--- 1052 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--- 1052 (1109)
......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... .............. .......
T Consensus 175 --~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3niz_A 175 --SYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDD-DQLPKIFSILGTPNPREWPQVQELP 251 (311)
T ss_dssp -----CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTT-THHHHHHHHHCCCCTTTSGGGTTSH
T ss_pred --cccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHHCCCChHHhhhhhccc
Confidence 2233578999999998876 56899999999999999999999999654322 22222222111110 0000000
Q ss_pred ----------chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1053 ----------DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1053 ----------d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
+....... ......++.+++.+|++.||++|||++|+++|-+-
T Consensus 252 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f 304 (311)
T 3niz_A 252 LWKQRTFQVFEKKPWSSI----IPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYF 304 (311)
T ss_dssp HHHSCCCCCCCCCCHHHH----STTCCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGG
T ss_pred hhhhcccccccCCcHHHh----CcccCHHHHHHHHHHcCCChhHCCCHHHHhcCccc
Confidence 00000000 11122456778889999999999999999997543
No 81
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1.4e-38 Score=359.01 Aligned_cols=260 Identities=22% Similarity=0.341 Sum_probs=210.3
Q ss_pred hhCCCCCceeecccCeEEEEEEe------CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCce
Q 001275 818 TENLNAKHVIGRGAHGIVYKASL------GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCG 891 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 891 (1109)
.++|...+.||+|+||.||+|.. .+++.||||++...........+.+|++++++++||||+++++++...+..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 101 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL 101 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence 36788899999999999999975 345889999986544445557789999999999999999999999999999
Q ss_pred eEEEEeccCCCHHHHHhccCC---------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCC
Q 001275 892 IIMYRYMENGSLRDVLHSITP---------------------PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKP 950 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~ 950 (1109)
++||||+++|+|.+++..... ...+++..++.++.|+++||+||| +.+|+||||||
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dikp 178 (314)
T 2ivs_A 102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLAA 178 (314)
T ss_dssp EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCCSG
T ss_pred EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCcccccch
Confidence 999999999999999986542 124889999999999999999999 88999999999
Q ss_pred CCeeeCCCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCcc
Q 001275 951 ENILLDSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYK 1029 (1109)
Q Consensus 951 ~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~ 1029 (1109)
+||++++++.+||+|||+++...............+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||.....
T Consensus 179 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~ 258 (314)
T 2ivs_A 179 RNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP 258 (314)
T ss_dssp GGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred heEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 999999999999999999987755433333334567889999999999889999999999999999999 9999865322
Q ss_pred ccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1030 ERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
. .....+.... .. .. ......++.+++.+||+.||++||+++|++++|+++
T Consensus 259 ~--~~~~~~~~~~----~~-~~-------------~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~ 309 (314)
T 2ivs_A 259 E--RLFNLLKTGH----RM-ER-------------PDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKM 309 (314)
T ss_dssp G--GHHHHHHTTC----CC-CC-------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred H--HHHHHhhcCC----cC-CC-------------CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 1 1221111100 00 00 011223466788899999999999999999999876
No 82
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.1e-39 Score=369.60 Aligned_cols=259 Identities=24% Similarity=0.366 Sum_probs=207.0
Q ss_pred hCCCCCceeecccCeEEEEEEeC------CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCcee
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG------PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGI 892 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 892 (1109)
++|.+.++||+|+||+||+|.+. +++.||||++...........+.+|+.++++++||||+++++++...+..+
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 150 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF 150 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCE
Confidence 56888999999999999999743 467899999865545555667899999999999999999999999999999
Q ss_pred EEEEeccCCCHHHHHhccCC----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCC---cEEEec
Q 001275 893 IMYRYMENGSLRDVLHSITP----PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEM---EPHISD 965 (1109)
Q Consensus 893 lv~e~~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~---~~kl~D 965 (1109)
+||||+++|+|.++++.... ...+++..++.++.|+++||+||| +.+|+||||||+||+++.++ .+||+|
T Consensus 151 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL~D 227 (367)
T 3l9p_A 151 ILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGD 227 (367)
T ss_dssp EEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECC
T ss_pred EEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEECC
Confidence 99999999999999976532 245899999999999999999999 88999999999999999555 599999
Q ss_pred ccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcC
Q 001275 966 FGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSD 1044 (1109)
Q Consensus 966 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~ 1044 (1109)
||+++...............||+.|+|||++.+..++.++|||||||++|||++ |+.||..... ......+ ...
T Consensus 228 FG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~--~~~~~~i---~~~ 302 (367)
T 3l9p_A 228 FGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--QEVLEFV---TSG 302 (367)
T ss_dssp CHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHHHHH---HTT
T ss_pred CccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHH---HcC
Confidence 999986533322223334578999999999999999999999999999999998 9898864321 1111111 111
Q ss_pred ccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1045 TEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1045 ~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.. . +. .......+.+++.+||+.||++||+++|++++|+.+
T Consensus 303 ~~-~----~~----------~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~ 343 (367)
T 3l9p_A 303 GR-M----DP----------PKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 343 (367)
T ss_dssp CC-C----CC----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CC-C----CC----------CccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 00 0 00 011123466788899999999999999999999764
No 83
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=1.3e-37 Score=348.97 Aligned_cols=265 Identities=26% Similarity=0.348 Sum_probs=200.9
Q ss_pred hhCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhc--CCCCceeeEeeEEecC----Cce
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGK--IRHRNLVRLEDFWLRK----DCG 891 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~----~~~ 891 (1109)
.++|+..+.||+|+||+||+|+. +++.||||++.. .....+.+|.+++.. ++||||+++++++... ...
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~----~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~ 81 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSS----RDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQL 81 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECG----GGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecc----ccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCcee
Confidence 46799999999999999999988 589999999843 233455566666655 7999999999986543 457
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcC-----CCCCeEEeccCCCCeeeCCCCcEEEecc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYD-----CDPPIVHRDIKPENILLDSEMEPHISDF 966 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~-----~~~~ivH~Dlk~~NIll~~~~~~kl~Df 966 (1109)
++||||+++|+|.++++.. .+++..++.++.|++.||+|||.. ++.+|+||||||+||+++.++.+||+||
T Consensus 82 ~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Df 157 (301)
T 3q4u_A 82 WLITHYHEMGSLYDYLQLT----TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADL 157 (301)
T ss_dssp EEEECCCTTCBHHHHHTTC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCC
T ss_pred EEehhhccCCCHHHHHhhc----ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeC
Confidence 9999999999999999643 489999999999999999999932 2578999999999999999999999999
Q ss_pred cCCcccCCCCCCc--eeeecccCcccccccccccC------CCCccCcchhhHHHHHHHHhC----------CCCCCCCc
Q 001275 967 GIAKLLDKSPAST--TSISVVGTIGYIAPENAFTT------AKSKESDVYSYGVVLLELITR----------KKALDPSY 1028 (1109)
Q Consensus 967 Gla~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~sDvwSlGvil~elltg----------~~p~~~~~ 1028 (1109)
|+++......... ......||+.|+|||++.+. .++.++|||||||++|||++| +.||....
T Consensus 158 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~ 237 (301)
T 3q4u_A 158 GLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVV 237 (301)
T ss_dssp TTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred CCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccC
Confidence 9998664433221 12234799999999998876 445799999999999999999 77775543
Q ss_pred cccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1029 KERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
................. ..... . ... .......++.+++.+||+.||++|||++|+++.|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~-~~~~~-~----~~~---~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 238 PNDPSFEDMRKVVCVDQ-QRPNI-P----NRW---FSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp CSSCCHHHHHHHHTTSC-CCCCC-C----GGG---GGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCcchhhhhHHHhccC-CCCCC-C----hhh---ccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 33333222222211111 00010 0 000 0123456678899999999999999999999999875
No 84
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=8.4e-38 Score=348.94 Aligned_cols=261 Identities=27% Similarity=0.395 Sum_probs=203.5
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeeccc--ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGH--KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|++.+.||+|+||+||+|.. .+++.||+|++..... ......+.+|+.++++++||||+++++++...+..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 90 (294)
T 4eqm_A 11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM 90 (294)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence 5788899999999999999976 4689999999854332 223467899999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 91 e~~~g~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 164 (294)
T 4eqm_A 91 EYIEGPTLSEYIESHG---PLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSET 164 (294)
T ss_dssp ECCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC---
T ss_pred eCCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCccccccc
Confidence 9999999999998654 4899999999999999999999 889999999999999999999999999999876433
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
.. .......||+.|+|||.+.+..++.++||||+|+++|||++|+.||....... .......... +.
T Consensus 165 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~----~~~~~~~~~~--------~~ 231 (294)
T 4eqm_A 165 SL-TQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVS----IAIKHIQDSV--------PN 231 (294)
T ss_dssp -----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHH----HHHHHHSSCC--------CC
T ss_pred cc-cccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH----HHHHHhhccC--------CC
Confidence 22 22234579999999999999999999999999999999999999996532211 1111111000 00
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCC-CHHHHHHHhhhCCC
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRP-NMRDVVRQLVDASV 1102 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-s~~evl~~L~~~~~ 1102 (1109)
.... .. ......+.+++.+|++.||++|| +++++.+.|+.+..
T Consensus 232 ~~~~-~~---~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~ 275 (294)
T 4eqm_A 232 VTTD-VR---KDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH 275 (294)
T ss_dssp HHHH-SC---TTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred cchh-cc---cCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence 0000 01 11223466788899999999998 89999999988744
No 85
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=2.2e-38 Score=375.66 Aligned_cols=262 Identities=23% Similarity=0.367 Sum_probs=211.6
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEec
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRYM 898 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 898 (1109)
++|...+.||+|+||+||+|...+++.||||++... ......+.+|++++++++||||+++++++. .+..++||||+
T Consensus 188 ~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~ 264 (454)
T 1qcf_A 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG--SMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFM 264 (454)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTT--SBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECCC
T ss_pred HHeEEEEEcccCCceEEEEEEECCccEEEEEEecCC--CccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEeec
Confidence 568888999999999999999988999999998532 345678999999999999999999999986 66789999999
Q ss_pred cCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCCC
Q 001275 899 ENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPAS 978 (1109)
Q Consensus 899 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~ 978 (1109)
++|+|.++++... ...+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++...... .
T Consensus 265 ~~g~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~-~ 339 (454)
T 1qcf_A 265 AKGSLLDFLKSDE-GSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE-Y 339 (454)
T ss_dssp TTCBHHHHHHSHH-HHTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHH-H
T ss_pred CCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCc-e
Confidence 9999999997532 124788999999999999999999 8899999999999999999999999999998764321 1
Q ss_pred ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchhhh
Q 001275 979 TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLM 1057 (1109)
Q Consensus 979 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 1057 (1109)
.......+|+.|+|||++....++.++|||||||++|||++ |+.||..... .+....+..... ...
T Consensus 340 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~--~~~~~~i~~~~~-------~~~---- 406 (454)
T 1qcf_A 340 TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN--PEVIRALERGYR-------MPR---- 406 (454)
T ss_dssp HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHHHHHHHTCC-------CCC----
T ss_pred eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCCC-------CCC----
Confidence 11223456789999999999999999999999999999999 9999864321 111111111100 000
Q ss_pred HHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCCCCCCCC
Q 001275 1058 EEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASVPMTSKY 1108 (1109)
Q Consensus 1058 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~~ 1108 (1109)
......++.+++.+||+.||++||+++++++.|+++.....++|
T Consensus 407 -------~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~~~~~ 450 (454)
T 1qcf_A 407 -------PENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTATESQY 450 (454)
T ss_dssp -------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSSCCSS
T ss_pred -------CCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhcccccc
Confidence 01123456778889999999999999999999999977766665
No 86
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=3.6e-38 Score=355.55 Aligned_cols=261 Identities=21% Similarity=0.334 Sum_probs=211.3
Q ss_pred hCCCCCceeecccCeEEEEEEe------CCCcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCce
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL------GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCG 891 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 891 (1109)
++|...+.||+|+||+||+|+. .+++.||||++...........+.+|+++++++ +||||+++++++...+..
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~ 102 (313)
T 1t46_A 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPT 102 (313)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCc
Confidence 5788899999999999999974 356889999986554444557799999999999 999999999999999999
Q ss_pred eEEEEeccCCCHHHHHhccCC---------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeC
Q 001275 892 IIMYRYMENGSLRDVLHSITP---------------PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLD 956 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~---------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~ 956 (1109)
++||||+++|+|.+++..... ...+++..++.++.|+++||+||| +.+|+||||||+||+++
T Consensus 103 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~ 179 (313)
T 1t46_A 103 LVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLT 179 (313)
T ss_dssp EEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEE
T ss_pred EEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEEc
Confidence 999999999999999986542 124899999999999999999999 88999999999999999
Q ss_pred CCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHH
Q 001275 957 SEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIV 1035 (1109)
Q Consensus 957 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~ 1035 (1109)
.++.+||+|||+++...............+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... ....
T Consensus 180 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~-~~~~ 258 (313)
T 1t46_A 180 HGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVD-SKFY 258 (313)
T ss_dssp TTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSS-HHHH
T ss_pred CCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccch-hHHH
Confidence 999999999999987765544333344567889999999999999999999999999999999 99998654221 1111
Q ss_pred HHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCC
Q 001275 1036 GWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDAS 1101 (1109)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 1101 (1109)
..+...... . . ......++.+++.+|++.||++||+++|++++|++..
T Consensus 259 ~~~~~~~~~------~-~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 306 (313)
T 1t46_A 259 KMIKEGFRM------L-S-----------PEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI 306 (313)
T ss_dssp HHHHHTCCC------C-C-----------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHhccCCCC------C-C-----------cccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 111111100 0 0 0111234667888999999999999999999998763
No 87
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=1.3e-38 Score=355.96 Aligned_cols=274 Identities=23% Similarity=0.319 Sum_probs=201.9
Q ss_pred hCCCCCceeecccCeEEEEEEe-----CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecC--Cce
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-----GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK--DCG 891 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~ 891 (1109)
++|++.+.||+|+||+||+|++ .+++.||||++.. ........+.+|++++++++||||+++++++... ...
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQH-STEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESC-CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEccc-CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 6788899999999999999974 3688999999843 2334456789999999999999999999998654 457
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKL 971 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~ 971 (1109)
++||||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 89 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~ 163 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKV 163 (295)
T ss_dssp EEEEECCTTCBHHHHHHHCG--GGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCSCC-
T ss_pred EEEEEeCCCCCHHHHHHhcc--cccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCccccc
Confidence 99999999999999997643 24899999999999999999999 89999999999999999999999999999987
Q ss_pred cCCCCCC-ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccc
Q 001275 972 LDKSPAS-TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEIND 1050 (1109)
Q Consensus 972 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1109)
....... .......+|..|+|||.+.+..++.++||||+|+++|||++|..|+...... .................
T Consensus 164 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 240 (295)
T 3ugc_A 164 LPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE---FMRMIGNDKQGQMIVFH 240 (295)
T ss_dssp ------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHH---HHHHHCTTCCTHHHHHH
T ss_pred ccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHH---HHhhhcCccccchhHHH
Confidence 6543221 2223346778899999999999999999999999999999999987543211 00000000000000000
Q ss_pred ccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCC
Q 001275 1051 IVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASV 1102 (1109)
Q Consensus 1051 ~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 1102 (1109)
. ..................++.+++.+||+.||++|||++|+++.|+++..
T Consensus 241 ~-~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~ 291 (295)
T 3ugc_A 241 L-IELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 291 (295)
T ss_dssp H-HHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred H-HHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHH
Confidence 0 00000000000111223457778889999999999999999999987643
No 88
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.8e-37 Score=349.95 Aligned_cols=255 Identities=23% Similarity=0.306 Sum_probs=204.9
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccc-----cChHHHHHHHHHHhcCCCCceeeEeeEEecCCce
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHK-----RGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCG 891 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 891 (1109)
.++|...+.||+|+||.||+|... +++.||+|.+...... .....+.+|++++++++||||+++++++...+..
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 89 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 89 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 356889999999999999999775 6899999998654322 2356799999999999999999999999999999
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCC----cEEEeccc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEM----EPHISDFG 967 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~----~~kl~DfG 967 (1109)
++||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||
T Consensus 90 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg 163 (326)
T 2y0a_A 90 ILILELVAGGELFDFLAEK---ESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFG 163 (326)
T ss_dssp EEEEECCCSCBHHHHHTTS---SCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCT
T ss_pred EEEEEcCCCCCHHHHHHhc---CCcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECC
Confidence 9999999999999999753 34899999999999999999999 89999999999999999887 79999999
Q ss_pred CCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccc
Q 001275 968 IAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEE 1047 (1109)
Q Consensus 968 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1109)
+++....... .....||+.|+|||++.+..++.++||||+||++|+|++|+.||...... .....+.. ....
T Consensus 164 ~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~~~~---~~~~ 235 (326)
T 2y0a_A 164 LAHKIDFGNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ--ETLANVSA---VNYE 235 (326)
T ss_dssp TCEECCTTSC---CCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHH---TCCC
T ss_pred CCeECCCCCc---cccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH--HHHHHHHh---cCCC
Confidence 9987653322 22357999999999999999999999999999999999999999653211 11111111 0000
Q ss_pred cccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1048 INDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1048 ~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
. ... . .......+.+++.+|++.||++|||++|+++|-+
T Consensus 236 ~----~~~----~----~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~ 274 (326)
T 2y0a_A 236 F----EDE----Y----FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPW 274 (326)
T ss_dssp C----CHH----H----HTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHSTT
T ss_pred c----Ccc----c----cccCCHHHHHHHHHHccCChhhCCCHHHHhcCCC
Confidence 0 000 0 0111234566888999999999999999998754
No 89
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=1.5e-37 Score=346.87 Aligned_cols=273 Identities=21% Similarity=0.325 Sum_probs=204.4
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccccc-ChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKR-GSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
++|+..++||+|+||+||+|... +++.||+|++....... ....+.+|++++++++||||+++++++...+..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 46888999999999999999775 68999999986544333 34678899999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSP 976 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~ 976 (1109)
|+++ ++.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~~~-~l~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 155 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSCN--GDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV 155 (292)
T ss_dssp CCSE-EHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCC
T ss_pred cCCC-CHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCcc
Confidence 9986 6666665432 34899999999999999999999 8899999999999999999999999999998764332
Q ss_pred CCceeeecccCcccccccccccCC-CCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccc-cccc--
Q 001275 977 ASTTSISVVGTIGYIAPENAFTTA-KSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEI-NDIV-- 1052 (1109)
Q Consensus 977 ~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 1052 (1109)
.......||+.|+|||++.+.. ++.++||||+||++|||++|+.|+........................ ....
T Consensus 156 --~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 233 (292)
T 3o0g_A 156 --RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKL 233 (292)
T ss_dssp --SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGS
T ss_pred --ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhccc
Confidence 2223457899999999988766 799999999999999999999987654433332322222211111000 0000
Q ss_pred -chh---h--hHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1053 -DLS---L--MEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1053 -d~~---~--~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
+.. . ..............++.+++.+|++.||++|||++|+++|-+-
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f 286 (292)
T 3o0g_A 234 PDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYF 286 (292)
T ss_dssp TTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGG
T ss_pred ccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcCccc
Confidence 000 0 0000000011223445678889999999999999999997553
No 90
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=5e-38 Score=357.78 Aligned_cols=260 Identities=21% Similarity=0.346 Sum_probs=208.7
Q ss_pred hhCCCCCceeecccCeEEEEEEeC--------CCcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEEecC
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG--------PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRK 888 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 888 (1109)
.++|...+.||+|+||+||+|+.. +++.||||++...........+.+|+++++++ +||||+++++++...
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 367889999999999999999763 56789999986554445566789999999999 899999999999999
Q ss_pred CceeEEEEeccCCCHHHHHhccCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee
Q 001275 889 DCGIIMYRYMENGSLRDVLHSITP-------------PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL 955 (1109)
Q Consensus 889 ~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll 955 (1109)
+..++||||+++|+|.+++..... ...+++..++.++.|+++||+||| +.+|+||||||+||++
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll 190 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLV 190 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEE
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceEEE
Confidence 999999999999999999986542 234899999999999999999999 8899999999999999
Q ss_pred CCCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccH
Q 001275 956 DSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDI 1034 (1109)
Q Consensus 956 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~ 1034 (1109)
+.++.+||+|||+++...............+|+.|+|||++.+..++.++||||+|+++|||++ |+.||..... ...
T Consensus 191 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~ 268 (334)
T 2pvf_A 191 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV--EEL 268 (334)
T ss_dssp CTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHH
T ss_pred cCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCH--HHH
Confidence 9999999999999987755433333334567889999999998889999999999999999999 9999864321 111
Q ss_pred HHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1035 VGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
...+...... .. ......++.+++.+||+.||++||+++|++++|+++
T Consensus 269 ~~~~~~~~~~-----~~-------------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l 316 (334)
T 2pvf_A 269 FKLLKEGHRM-----DK-------------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 316 (334)
T ss_dssp HHHHHHTCCC-----CC-------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHhcCCCC-----CC-------------CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 1111111000 00 011123466788899999999999999999999875
No 91
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=2.4e-37 Score=349.22 Aligned_cols=274 Identities=22% Similarity=0.321 Sum_probs=193.8
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
.++|+..+.||+|+||+||+|... +++.||+|++...........+.+|++++++++||||+++++++...+..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 467999999999999999999764 5899999999766555566788999999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccC---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 897 YMENGSLRDVLHSIT---PPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
|++ |+|.+++.... ....+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 159 (317)
T 2pmi_A 84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFG 159 (317)
T ss_dssp CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence 998 59999986532 2235899999999999999999999 8899999999999999999999999999998764
Q ss_pred CCCCCceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccc-ccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEI-NDI 1051 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 1051 (1109)
.... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ................. ...
T Consensus 160 ~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~ 236 (317)
T 2pmi_A 160 IPVN--TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDE-EQLKLIFDIMGTPNESLWPSV 236 (317)
T ss_dssp SCCC--CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCSCCTTTCGGG
T ss_pred CCcc--cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHhCCCChhHhhhh
Confidence 3321 2233578999999999876 46899999999999999999999999654221 11111111111100000 000
Q ss_pred -------------cchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1052 -------------VDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1052 -------------~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
....+..............++.+++.+|++.||++|||++|+++|-+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~ 296 (317)
T 2pmi_A 237 TKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPW 296 (317)
T ss_dssp GGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGG
T ss_pred hhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCChh
Confidence 00000000000000112245777888999999999999999998743
No 92
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=4.4e-38 Score=349.38 Aligned_cols=254 Identities=19% Similarity=0.312 Sum_probs=203.8
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEec
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRYM 898 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 898 (1109)
++|+..+.||+|+||+||+|+..++..||+|++... .....++.+|++++++++||||+++++++...+..++||||+
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 101 (283)
T 3gen_A 24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG--SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM 101 (283)
T ss_dssp GGEEEEEECC---CEEEEEEEETTTEEEEEEEECTT--SBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCC
T ss_pred HHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCC--CCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEecc
Confidence 578889999999999999999998999999998533 334567999999999999999999999999999999999999
Q ss_pred cCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCCC
Q 001275 899 ENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPAS 978 (1109)
Q Consensus 899 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~ 978 (1109)
++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...... .
T Consensus 102 ~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-~ 175 (283)
T 3gen_A 102 ANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-Y 175 (283)
T ss_dssp TTCBHHHHHHCGG--GCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH-H
T ss_pred CCCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEccccccccccccc-c
Confidence 9999999997633 24899999999999999999999 8899999999999999999999999999998664321 1
Q ss_pred ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchhhh
Q 001275 979 TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLM 1057 (1109)
Q Consensus 979 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 1057 (1109)
.......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... ... .......... .+
T Consensus 176 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~--~~~---~~~~~~~~~~----~~--- 243 (283)
T 3gen_A 176 TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS--ETA---EHIAQGLRLY----RP--- 243 (283)
T ss_dssp HSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHH---HHHHTTCCCC----CC---
T ss_pred ccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChh--HHH---HHHhcccCCC----CC---
Confidence 12223457788999999999999999999999999999998 99998653211 111 1111110000 00
Q ss_pred HHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1058 EEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1058 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.....++.+++.+||+.||++||+++|++++|.++
T Consensus 244 --------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~ 278 (283)
T 3gen_A 244 --------HLASEKVYTIMYSCWHEKADERPTFKILLSNILDV 278 (283)
T ss_dssp --------TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred --------CcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence 01123466788899999999999999999999875
No 93
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=5.5e-38 Score=355.79 Aligned_cols=260 Identities=19% Similarity=0.336 Sum_probs=190.6
Q ss_pred hhCCCCCceeecccCeEEEEEEeCCC----cEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCce-
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLGPN----AVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCG- 891 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~~~----~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 891 (1109)
.++|...+.||+|+||+||+|..... ..||||++.... .......+.+|++++++++||||+++++++...+..
T Consensus 22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 101 (323)
T 3qup_A 22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKG 101 (323)
T ss_dssp ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC----
T ss_pred hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccccc
Confidence 46799999999999999999976543 279999985432 333456799999999999999999999999877655
Q ss_pred -----eEEEEeccCCCHHHHHhccC---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEE
Q 001275 892 -----IIMYRYMENGSLRDVLHSIT---PPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHI 963 (1109)
Q Consensus 892 -----~lv~e~~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl 963 (1109)
++||||+++|+|.+++.... ....+++..++.++.|+++||+||| +.+|+||||||+||++++++.+||
T Consensus 102 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~~kl 178 (323)
T 3qup_A 102 RLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTVCV 178 (323)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEE
T ss_pred CCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCCEEE
Confidence 99999999999999996532 2225899999999999999999999 889999999999999999999999
Q ss_pred ecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhh
Q 001275 964 SDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVW 1042 (1109)
Q Consensus 964 ~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 1042 (1109)
+|||+++...............+|+.|+|||.+.+..++.++||||+||++|||++ |+.||...... .....+ .
T Consensus 179 ~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~---~ 253 (323)
T 3qup_A 179 ADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENA--EIYNYL---I 253 (323)
T ss_dssp CCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHH---H
T ss_pred eeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChH--HHHHHH---h
Confidence 99999987655443333444567889999999999999999999999999999999 88888653221 111111 1
Q ss_pred cCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1043 SDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1043 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.... . ........++.+++.+||+.||++||++.|+++.|+++
T Consensus 254 ~~~~-~--------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~ 296 (323)
T 3qup_A 254 GGNR-L--------------KQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENI 296 (323)
T ss_dssp TTCC-C--------------CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred cCCC-C--------------CCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 1000 0 00011223467788899999999999999999999875
No 94
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.5e-37 Score=351.11 Aligned_cols=254 Identities=19% Similarity=0.289 Sum_probs=204.9
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
.++|.+.+.||+|+||+||+|... +++.||+|.+... ......+.+|++++++++||||+++++++.+.+..++|||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 81 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK--GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFE 81 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC--THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEEC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC--cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEE
Confidence 367888999999999999999765 5789999988532 3334568899999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCC--CCcEEEecccCCcccCC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDS--EMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~--~~~~kl~DfGla~~~~~ 974 (1109)
|+++|+|.+++.... ..+++..+..++.|+++|++||| +.+|+||||||+||+++. ++.+||+|||+++....
T Consensus 82 ~~~g~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~ 156 (321)
T 1tki_A 82 FISGLDIFERINTSA--FELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP 156 (321)
T ss_dssp CCCCCBHHHHHTSSS--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCT
T ss_pred eCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCC
Confidence 999999999997533 35899999999999999999999 889999999999999987 78999999999987754
Q ss_pred CCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 975 SPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 975 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
.. ......||+.|+|||++.+..++.++||||+||++|+|++|+.||...... ............. +.
T Consensus 157 ~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-----~~~~~i~~~~~~~----~~ 224 (321)
T 1tki_A 157 GD---NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ-----QIIENIMNAEYTF----DE 224 (321)
T ss_dssp TC---EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHHHHHHTCCCC----CH
T ss_pred CC---ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHH-----HHHHHHHcCCCCC----Ch
Confidence 32 234467999999999999888899999999999999999999999653221 1111111110000 00
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
. .......++.+++.+|++.||++|||+.|+++|-+
T Consensus 225 ~--------~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp~ 260 (321)
T 1tki_A 225 E--------AFKEISIEAMDFVDRLLVKERKSRMTASEALQHPW 260 (321)
T ss_dssp H--------HHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHH
T ss_pred h--------hhccCCHHHHHHHHHHcCCChhHCcCHHHHhcChh
Confidence 0 01112234667888999999999999999999764
No 95
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=1.2e-37 Score=353.19 Aligned_cols=257 Identities=22% Similarity=0.328 Sum_probs=202.0
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcE----EEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAV----FAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~----vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 893 (1109)
++|+..++||+|+||+||+|... +++. ||+|.+...........+.+|+.++++++||||+++++++. .+..++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~ 91 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL 91 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence 46888899999999999999764 3443 77787754444445567789999999999999999999986 566899
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
||||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 92 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~ 166 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQHR--GALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLP 166 (325)
T ss_dssp EEECCTTCBSHHHHHSSG--GGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSC
T ss_pred EEEeCCCCCHHHHHHHcc--ccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCcccccC
Confidence 999999999999997642 34888999999999999999999 8899999999999999999999999999999876
Q ss_pred CCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
............+|..|+|||++.+..++.++||||+||++|||++ |+.||..... ......+.... ......
T Consensus 167 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~~--~~~~~~-- 240 (325)
T 3kex_A 167 PDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRL--AEVPDLLEKGE--RLAQPQ-- 240 (325)
T ss_dssp CCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCT--THHHHHHHTTC--BCCCCT--
T ss_pred cccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCH--HHHHHHHHcCC--CCCCCC--
Confidence 5544444455678889999999999999999999999999999999 9999865321 11222111100 000000
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCC
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDAS 1101 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 1101 (1109)
....++.+++.+||+.||++||+++|++++|+++.
T Consensus 241 --------------~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~ 275 (325)
T 3kex_A 241 --------------ICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMA 275 (325)
T ss_dssp --------------TBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHT
T ss_pred --------------cCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 01123556888999999999999999999998753
No 96
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=1.4e-37 Score=346.26 Aligned_cols=271 Identities=22% Similarity=0.345 Sum_probs=201.4
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
++|...+.||+|+||+||+|+..+++.||+|++..... ......+.+|++++++++||||+++++++...+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 46888999999999999999988899999999854432 23346788999999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
+++ +|.+++.... ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 154 (288)
T 1ob3_A 82 LDQ-DLKKLLDVCE--GGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPV- 154 (288)
T ss_dssp CSE-EHHHHHHTST--TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---
T ss_pred cCC-CHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCccc-
Confidence 985 9999987643 34899999999999999999999 8899999999999999999999999999998764322
Q ss_pred CceeeecccCcccccccccccC-CCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcc-ccccc----
Q 001275 978 STTSISVVGTIGYIAPENAFTT-AKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTE-EINDI---- 1051 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---- 1051 (1109)
.......||+.|+|||++.+. .++.++||||+||++|||++|+.||..... ................ .....
T Consensus 155 -~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
T 1ob3_A 155 -RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSE-ADQLMRIFRILGTPNSKNWPNVTELP 232 (288)
T ss_dssp --------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCCCCTTTSTTGGGST
T ss_pred -cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHHCCCChhhchhhhccc
Confidence 122335789999999988764 589999999999999999999999965422 1122222221111000 00000
Q ss_pred -cchhhhH--Hh-hhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1052 -VDLSLME--EM-LVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1052 -~d~~~~~--~~-~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.++.... .. ..........++.+++.+|++.||++|||++|+++|-+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~ 283 (288)
T 1ob3_A 233 KYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAY 283 (288)
T ss_dssp TCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGG
T ss_pred ccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcCcc
Confidence 0000000 00 00000112244667888999999999999999998754
No 97
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=363.33 Aligned_cols=276 Identities=20% Similarity=0.242 Sum_probs=211.7
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCC--ceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKD--CGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lv~ 895 (1109)
++|.+.++||+|+||+||+|... +++.||||++...........+.+|++++++++||||+++++++...+ ..++||
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~ 88 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence 56888999999999999999775 589999999965555556678889999999999999999999998765 679999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee----CCCCcEEEecccCCcc
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL----DSEMEPHISDFGIAKL 971 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll----~~~~~~kl~DfGla~~ 971 (1109)
||+++|+|.+++........+++..++.++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||+++.
T Consensus 89 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~ 165 (396)
T 4eut_A 89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE 165 (396)
T ss_dssp CCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEE
T ss_pred ecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCCceE
Confidence 99999999999987655455999999999999999999999 8899999999999999 7778899999999987
Q ss_pred cCCCCCCceeeecccCccccccccccc--------CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhc
Q 001275 972 LDKSPASTTSISVVGTIGYIAPENAFT--------TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWS 1043 (1109)
Q Consensus 972 ~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~ 1043 (1109)
..... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.................
T Consensus 166 ~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~ 242 (396)
T 4eut_A 166 LEDDE---QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITG 242 (396)
T ss_dssp CCCGG---GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHS
T ss_pred ccCCC---ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcC
Confidence 65432 2223579999999998865 567889999999999999999999997543322222111111111
Q ss_pred Ccc-cccccc---chhh--hH--HhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1044 DTE-EINDIV---DLSL--ME--EMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1044 ~~~-~~~~~~---d~~~--~~--~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
... ....+. .... .. .............+.+++.+|++.||++||+++|+++.+.++
T Consensus 243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~i 307 (396)
T 4eut_A 243 KPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI 307 (396)
T ss_dssp CCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred CCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHH
Confidence 110 000000 0000 00 000011234455677788899999999999999999999875
No 98
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.8e-38 Score=354.02 Aligned_cols=249 Identities=22% Similarity=0.326 Sum_probs=201.3
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
.+|.+.+.||+|+||+||+|.. .+++.||+|++.... .......+.+|+++++.++||||+++++++...+..++||
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 88 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI 88 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 5788899999999999999976 578999999985432 2233467899999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+ +|+|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||++++++.+||+|||++......
T Consensus 89 E~~-~g~l~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~ 161 (336)
T 3h4j_B 89 EYA-GGELFDYIVEKK---RMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG 161 (336)
T ss_dssp CCC-CEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTS
T ss_pred ECC-CCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCEEEEEeccceeccCC
Confidence 999 689999987644 3899999999999999999999 889999999999999999999999999999876543
Q ss_pred CCCceeeecccCcccccccccccCCC-CccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAK-SKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
.. .....||+.|+|||++.+..+ +.++||||+||++|+|++|+.||........ ...+...
T Consensus 162 ~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~---------------~~~i~~~ 223 (336)
T 3h4j_B 162 NF---LKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL---------------FKKVNSC 223 (336)
T ss_dssp BT---TCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC---------------BCCCCSS
T ss_pred cc---cccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH---------------HHHHHcC
Confidence 22 223579999999999988876 7899999999999999999999965321110 0000000
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.. ..+. ....++.+++.+|++.||++|||++|+++|-+
T Consensus 224 ~~---~~p~---~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~ 261 (336)
T 3h4j_B 224 VY---VMPD---FLSPGAQSLIRRMIVADPMQRITIQEIRRDPW 261 (336)
T ss_dssp CC---CCCT---TSCHHHHHHHHTTSCSSGGGSCCHHHHTTCHH
T ss_pred CC---CCcc---cCCHHHHHHHHHHcCCChhHCcCHHHHHhChh
Confidence 00 0000 11234566888999999999999999998754
No 99
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=3.4e-37 Score=355.93 Aligned_cols=256 Identities=21% Similarity=0.273 Sum_probs=200.8
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCceeEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 894 (1109)
++|+..++||+|+||+||+|+.. +++.||+|++.... .......+.+|..++.++ +||||+++++++...+..++|
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV 131 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 131 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEE
Confidence 67899999999999999999765 57899999986543 223345688999999887 899999999999999999999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
|||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+....
T Consensus 132 ~E~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 205 (396)
T 4dc2_A 132 IEYVNGGDLMFHMQRQR---KLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 205 (396)
T ss_dssp EECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEcCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceeeeccc
Confidence 99999999999998644 4899999999999999999999 89999999999999999999999999999986432
Q ss_pred CCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCcccc----ccHHHHHHHhhcCcccccc
Q 001275 975 SPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKER----TDIVGWVRSVWSDTEEIND 1050 (1109)
Q Consensus 975 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 1050 (1109)
.. ......+||+.|+|||++.+..++.++||||+||++|||++|+.||....... .................
T Consensus 206 ~~--~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 281 (396)
T 4dc2_A 206 PG--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRI-- 281 (396)
T ss_dssp TT--CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCC--
T ss_pred CC--CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCC--
Confidence 22 22334689999999999999999999999999999999999999996432111 00111111111110000
Q ss_pred ccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCH------HHHHHHhh
Q 001275 1051 IVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNM------RDVVRQLV 1098 (1109)
Q Consensus 1051 ~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~------~evl~~L~ 1098 (1109)
......++.+++.+|++.||++||++ +|+++|-.
T Consensus 282 --------------p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpf 321 (396)
T 4dc2_A 282 --------------PRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPF 321 (396)
T ss_dssp --------------CTTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTT
T ss_pred --------------CCcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCcc
Confidence 01112345667889999999999985 68877654
No 100
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=6.5e-37 Score=344.77 Aligned_cols=248 Identities=24% Similarity=0.308 Sum_probs=203.5
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|+..+.||+|+||+||+|+.. +|+.||+|++.... .......+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~ 85 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 85 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence 57888999999999999999775 68999999986432 2234567889999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 86 e~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~ 159 (318)
T 1fot_A 86 DYIEGGELFSLLRKSQ---RFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV 159 (318)
T ss_dssp CCCCSCBHHHHHHHTS---SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC
T ss_pred eCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecCCc
Confidence 9999999999998643 4899999999999999999999 899999999999999999999999999999866432
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
.....||+.|+|||++.+..++.++||||+||++|||++|+.||..... ...............
T Consensus 160 -----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-----~~~~~~i~~~~~~~p------ 223 (318)
T 1fot_A 160 -----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT-----MKTYEKILNAELRFP------ 223 (318)
T ss_dssp -----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHHHCCCCCC------
T ss_pred -----cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhCCCCCC------
Confidence 1235799999999999999999999999999999999999999965321 111111111110000
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHHhh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRP-----NMRDVVRQLV 1098 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~evl~~L~ 1098 (1109)
... ..++.+++.+|++.||++|| +++|+++|-+
T Consensus 224 -------~~~---~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~hp~ 261 (318)
T 1fot_A 224 -------PFF---NEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPW 261 (318)
T ss_dssp -------TTS---CHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGG
T ss_pred -------CCC---CHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcCcc
Confidence 011 13456677899999999999 8999998754
No 101
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=1.8e-38 Score=359.67 Aligned_cols=265 Identities=20% Similarity=0.312 Sum_probs=210.3
Q ss_pred HHHhhCCCCCceeecccCeEEEEEEeC------CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecC
Q 001275 815 IEATENLNAKHVIGRGAHGIVYKASLG------PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK 888 (1109)
Q Consensus 815 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 888 (1109)
....++|...+.||+|+||.||+|... +++.||+|.+...........+.+|++++++++||||+++++++...
T Consensus 21 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 100 (322)
T 1p4o_A 21 EVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG 100 (322)
T ss_dssp BCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSS
T ss_pred cchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccC
Confidence 345578999999999999999999654 36889999986544444556789999999999999999999999999
Q ss_pred CceeEEEEeccCCCHHHHHhccC-------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcE
Q 001275 889 DCGIIMYRYMENGSLRDVLHSIT-------PPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEP 961 (1109)
Q Consensus 889 ~~~~lv~e~~~~gsL~~~l~~~~-------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~ 961 (1109)
+..++||||+++|+|.++++... ....+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+
T Consensus 101 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~NIli~~~~~~ 177 (322)
T 1p4o_A 101 QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTV 177 (322)
T ss_dssp SSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCCE
T ss_pred CccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCccceEEEcCCCeE
Confidence 99999999999999999997532 1235789999999999999999999 8899999999999999999999
Q ss_pred EEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHH
Q 001275 962 HISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRS 1040 (1109)
Q Consensus 962 kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~ 1040 (1109)
||+|||+++...............+|+.|+|||++.+..++.++||||+|+++|||++ |+.||..... .. ....
T Consensus 178 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~---~~~~ 252 (322)
T 1p4o_A 178 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN--EQ---VLRF 252 (322)
T ss_dssp EECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH--HH---HHHH
T ss_pred EECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH--HH---HHHH
Confidence 9999999986644322222233467889999999999999999999999999999999 8888854321 11 1111
Q ss_pred hhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCC
Q 001275 1041 VWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASV 1102 (1109)
Q Consensus 1041 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 1102 (1109)
..... .... .......+.+++.+|++.||++||++.|++++|++...
T Consensus 253 ~~~~~--~~~~-------------~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~ 299 (322)
T 1p4o_A 253 VMEGG--LLDK-------------PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME 299 (322)
T ss_dssp HHTTC--CCCC-------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred HHcCC--cCCC-------------CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence 11110 0000 01122346678889999999999999999999988633
No 102
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=7.2e-38 Score=370.81 Aligned_cols=262 Identities=26% Similarity=0.361 Sum_probs=205.5
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEec
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRYM 898 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 898 (1109)
++|...++||+|+||+||+|.+.++..||||++... .....++.+|++++++++||||+++++++.. +..++||||+
T Consensus 184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~ 260 (452)
T 1fmk_A 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG--TMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYM 260 (452)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT--SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCC
T ss_pred hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccC--CCCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhh
Confidence 567888999999999999999998889999998533 2345689999999999999999999999876 6789999999
Q ss_pred cCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCCC
Q 001275 899 ENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPAS 978 (1109)
Q Consensus 899 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~ 978 (1109)
++|+|.++++... ...+++..++.++.|+++||+||| +.+|+||||||+||++++++.+||+|||+++...... .
T Consensus 261 ~~gsL~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~-~ 335 (452)
T 1fmk_A 261 SKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-Y 335 (452)
T ss_dssp TTCBHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------
T ss_pred cCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCc-e
Confidence 9999999997532 234889999999999999999999 8999999999999999999999999999998764332 1
Q ss_pred ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchhhh
Q 001275 979 TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLM 1057 (1109)
Q Consensus 979 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 1057 (1109)
.......+|..|+|||++.+..++.++|||||||++|||++ |+.||..... .+....+. .... .
T Consensus 336 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~--~~~~~~i~---~~~~----~------ 400 (452)
T 1fmk_A 336 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--REVLDQVE---RGYR----M------ 400 (452)
T ss_dssp -------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH--HHHHHHHH---TTCC----C------
T ss_pred ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCH--HHHHHHHH---cCCC----C------
Confidence 22234567889999999999999999999999999999999 8988864321 11111111 1100 0
Q ss_pred HHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCCCCCCCC
Q 001275 1058 EEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASVPMTSKY 1108 (1109)
Q Consensus 1058 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~~ 1108 (1109)
.........+.+++.+||+.||++|||++++++.|+++.....++|
T Consensus 401 -----~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~~~ 446 (452)
T 1fmk_A 401 -----PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQY 446 (452)
T ss_dssp -----CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCCCC
T ss_pred -----CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCCccc
Confidence 0001123456678889999999999999999999999877666655
No 103
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=353.49 Aligned_cols=252 Identities=23% Similarity=0.313 Sum_probs=202.4
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|.+.+.||+|+||.||+|... +++.||+|++.... .......+.+|++++++++|||||++++++...+..++||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 57889999999999999999765 58899999985432 2334567889999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 95 e~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 168 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQNV---HFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE 168 (384)
T ss_dssp CCCTTEEHHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeeccCC
Confidence 9999999999998643 4899999999999999999999 899999999999999999999999999999876543
Q ss_pred CCCceeeecccCccccccccccc---CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 976 PASTTSISVVGTIGYIAPENAFT---TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
. ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... .................
T Consensus 169 ~---~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~--~~~~~~~~~~~~~~~~p--- 240 (384)
T 4fr4_A 169 T---QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSST--SSKEIVHTFETTVVTYP--- 240 (384)
T ss_dssp C---CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTS--CHHHHHHHHHHCCCCCC---
T ss_pred C---ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCc--cHHHHHHHHhhcccCCC---
Confidence 2 2234689999999999874 45899999999999999999999999643221 11111111111100000
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCC-HHHHHHHh
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPN-MRDVVRQL 1097 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-~~evl~~L 1097 (1109)
.....++.+++.+|++.||++||+ ++++.+|-
T Consensus 241 -------------~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~hp 273 (384)
T 4fr4_A 241 -------------SAWSQEMVSLLKKLLEPNPDQRFSQLSDVQNFP 273 (384)
T ss_dssp -------------TTSCHHHHHHHHHHSCSSGGGSCCSHHHHHTSG
T ss_pred -------------CcCCHHHHHHHHHHhcCCHhHhcccHHHHHcCh
Confidence 111234667888999999999998 78887654
No 104
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.4e-36 Score=346.32 Aligned_cols=270 Identities=24% Similarity=0.302 Sum_probs=201.9
Q ss_pred HHHhhCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcC--CCCceeeEeeEEecC----
Q 001275 815 IEATENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI--RHRNLVRLEDFWLRK---- 888 (1109)
Q Consensus 815 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~~~~~~~---- 888 (1109)
....++|++.+.||+|+||+||+|+.. ++.||||++... ....+.+|.+++... +||||+++++++...
T Consensus 33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~ 107 (337)
T 3mdy_A 33 RTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT----EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSW 107 (337)
T ss_dssp TTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGG
T ss_pred cccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc----ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCC
Confidence 344578999999999999999999887 899999998422 233455566665554 999999999999877
Q ss_pred CceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC--------CeEEeccCCCCeeeCCCCc
Q 001275 889 DCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDP--------PIVHRDIKPENILLDSEME 960 (1109)
Q Consensus 889 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~--------~ivH~Dlk~~NIll~~~~~ 960 (1109)
...++||||+++|+|.++++.. .+++..++.++.|++.||+||| +. +|+||||||+||+++.++.
T Consensus 108 ~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~~~~ivH~Dikp~Nill~~~~~ 180 (337)
T 3mdy_A 108 TQLYLITDYHENGSLYDYLKST----TLDAKSMLKLAYSSVSGLCHLH---TEIFSTQGKPAIAHRDLKSKNILVKKNGT 180 (337)
T ss_dssp CEEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHH---SCBCSTTCBCCEECSCCCGGGEEECTTSC
T ss_pred CceEEEEeccCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHH---HhhhhhccCCCEEecccchHHEEECCCCC
Confidence 6789999999999999999764 3899999999999999999999 66 9999999999999999999
Q ss_pred EEEecccCCcccCCCCCCc--eeeecccCcccccccccccCCCCcc------CcchhhHHHHHHHHhC----------CC
Q 001275 961 PHISDFGIAKLLDKSPAST--TSISVVGTIGYIAPENAFTTAKSKE------SDVYSYGVVLLELITR----------KK 1022 (1109)
Q Consensus 961 ~kl~DfGla~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~------sDvwSlGvil~elltg----------~~ 1022 (1109)
+||+|||+++......... ......||+.|+|||++.+..++.+ +|||||||++|||++| +.
T Consensus 181 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~ 260 (337)
T 3mdy_A 181 CCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQL 260 (337)
T ss_dssp EEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCC
T ss_pred EEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccc
Confidence 9999999998664432221 1124579999999999987776655 9999999999999999 55
Q ss_pred CCCCCccccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCC
Q 001275 1023 ALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASV 1102 (1109)
Q Consensus 1023 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 1102 (1109)
||..................... . .+...... .......++.+++.+||+.||++||+++|++++|+++..
T Consensus 261 p~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~---~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~ 331 (337)
T 3mdy_A 261 PYHDLVPSDPSYEDMREIVCIKK--L----RPSFPNRW---SSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSE 331 (337)
T ss_dssp TTTTTSCSSCCHHHHHHHHTTSC--C----CCCCCGGG---GGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cHhhhcCCCCchhhhHHHHhhhc--c----Cccccccc---hhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHh
Confidence 55433222222222111111000 0 00000000 012455668889999999999999999999999998754
Q ss_pred CCC
Q 001275 1103 PMT 1105 (1109)
Q Consensus 1103 ~~~ 1105 (1109)
...
T Consensus 332 ~~~ 334 (337)
T 3mdy_A 332 SQD 334 (337)
T ss_dssp TTT
T ss_pred hcc
Confidence 433
No 105
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=355.00 Aligned_cols=252 Identities=22% Similarity=0.276 Sum_probs=199.9
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCceeE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 893 (1109)
.++|+..++||+|+||+||+|+.. +++.||||++.... .......+.+|.+++..+ +||||+++++++...+..|+
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 367999999999999999999765 58999999986432 233456688999999988 79999999999999999999
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
||||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+...
T Consensus 102 v~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~ 175 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQKSR---RFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI 175 (353)
T ss_dssp EEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred EEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEccccceeecc
Confidence 999999999999997654 3899999999999999999999 8899999999999999999999999999998543
Q ss_pred CCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVD 1053 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1053 (1109)
... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||...... ...............
T Consensus 176 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~-----~~~~~i~~~~~~~p~--- 245 (353)
T 3txo_A 176 CNG--VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENED-----DLFEAILNDEVVYPT--- 245 (353)
T ss_dssp C-----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHHHHHCCCCCCT---
T ss_pred cCC--ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHH-----HHHHHHHcCCCCCCC---
Confidence 222 2233468999999999999999999999999999999999999999653211 111111111110100
Q ss_pred hhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCH------HHHHHHhh
Q 001275 1054 LSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNM------RDVVRQLV 1098 (1109)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~------~evl~~L~ 1098 (1109)
. ...++.+++.+|++.||++||++ +|+++|-+
T Consensus 246 ----------~---~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~hp~ 283 (353)
T 3txo_A 246 ----------W---LHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPF 283 (353)
T ss_dssp ----------T---SCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTSGG
T ss_pred ----------C---CCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhCCc
Confidence 0 11235567789999999999998 78887654
No 106
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=3.4e-37 Score=353.92 Aligned_cols=256 Identities=22% Similarity=0.307 Sum_probs=204.2
Q ss_pred HhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEE
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 894 (1109)
..++|.+.+.||+|+||.||+|... +++.||+|++..... ......+.+|++++++++||||+++++++.+.+..++|
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 106 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 106 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 3568999999999999999999764 689999999864432 23345788999999999999999999999999999999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCC---cEEEecccCCcc
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEM---EPHISDFGIAKL 971 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~---~~kl~DfGla~~ 971 (1109)
|||+++|+|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+||+++.++ .+||+|||+++.
T Consensus 107 ~e~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~ 180 (362)
T 2bdw_A 107 FDLVTGGELFEDIVARE---FYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIE 180 (362)
T ss_dssp ECCCCSCBHHHHHTTCS---CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBC
T ss_pred EecCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCcceE
Confidence 99999999999987543 4899999999999999999999 88999999999999998654 599999999987
Q ss_pred cCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccc
Q 001275 972 LDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDI 1051 (1109)
Q Consensus 972 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1109)
...... .....||+.|+|||++.+..++.++||||+||++|+|++|+.||..... ......+.. ......
T Consensus 181 ~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~--~~~~~~i~~---~~~~~~-- 250 (362)
T 2bdw_A 181 VNDSEA---WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ--HRLYAQIKA---GAYDYP-- 250 (362)
T ss_dssp CTTCCS---CCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHH---TCCCCC--
T ss_pred ecCCcc---cccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHh---CCCCCC--
Confidence 653322 2346799999999999999999999999999999999999999965321 111111111 100000
Q ss_pred cchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1052 VDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1052 ~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.+. ......++.+++.+|++.||++||++.|+++|-+
T Consensus 251 -~~~---------~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~ 287 (362)
T 2bdw_A 251 -SPE---------WDTVTPEAKSLIDSMLTVNPKKRITADQALKVPW 287 (362)
T ss_dssp -TTG---------GGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTSHH
T ss_pred -ccc---------ccCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcc
Confidence 000 0111234566888999999999999999998743
No 107
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=353.54 Aligned_cols=254 Identities=22% Similarity=0.305 Sum_probs=189.0
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
.++|.+.+.||+|+||+||+|+.. +++.||||++.... ....+.+|++++++++||||+++++++...+..++|||
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 128 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV---DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE 128 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch---hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence 467889999999999999999876 57899999985432 34568899999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCC---CCcEEEecccCCcccC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDS---EMEPHISDFGIAKLLD 973 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~---~~~~kl~DfGla~~~~ 973 (1109)
|+++|+|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+||+++. ++.+||+|||+++...
T Consensus 129 ~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~ 202 (349)
T 2w4o_A 129 LVTGGELFDRIVEKG---YYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVE 202 (349)
T ss_dssp CCCSCBHHHHHTTCS---SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC------
T ss_pred eCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCccccccC
Confidence 999999999997643 4899999999999999999999 889999999999999975 8899999999998664
Q ss_pred CCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVD 1053 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1053 (1109)
... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......... ........... ..
T Consensus 203 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~----~~~i~~~~~~~---~~ 272 (349)
T 2w4o_A 203 HQV---LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFM----FRRILNCEYYF---IS 272 (349)
T ss_dssp -------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHH----HHHHHTTCCCC---CT
T ss_pred ccc---ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHH----HHHHHhCCCcc---CC
Confidence 322 223457999999999999999999999999999999999999999654322111 11111110000 00
Q ss_pred hhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1054 LSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
+ .......++.+++.+|++.||++||++.|+++|-+-
T Consensus 273 ~---------~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~ 309 (349)
T 2w4o_A 273 P---------WWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWV 309 (349)
T ss_dssp T---------TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTT
T ss_pred c---------hhhhCCHHHHHHHHHHccCChhhCcCHHHHhcCccc
Confidence 0 001122346678889999999999999999997543
No 108
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=4.5e-37 Score=361.11 Aligned_cols=257 Identities=19% Similarity=0.258 Sum_probs=203.7
Q ss_pred HhhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEE
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 894 (1109)
..++|++.+.||+|+||+||+|.. .+|+.||+|++..... ......+.+|++++++++||||+++++++.+.+..++|
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 457799999999999999999965 5789999999865432 23345789999999999999999999999999999999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeC---CCCcEEEecccCCcc
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLD---SEMEPHISDFGIAKL 971 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~---~~~~~kl~DfGla~~ 971 (1109)
|||+++|+|.+++.... .+++..+..++.|+++|++||| +.+|+||||||+||+++ .++.+||+|||+++.
T Consensus 89 ~E~~~gg~L~~~i~~~~---~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~ 162 (444)
T 3soa_A 89 FDLVTGGELFEDIVARE---YYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIE 162 (444)
T ss_dssp ECCCBCCBHHHHHHHCS---CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBC
T ss_pred EEeCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCceeEE
Confidence 99999999999997643 4899999999999999999999 88999999999999998 467899999999987
Q ss_pred cCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccc
Q 001275 972 LDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDI 1051 (1109)
Q Consensus 972 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1109)
...... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||..... ......+.. ......
T Consensus 163 ~~~~~~--~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~--~~~~~~i~~---~~~~~~-- 233 (444)
T 3soa_A 163 VEGEQQ--AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ--HRLYQQIKA---GAYDFP-- 233 (444)
T ss_dssp CCTTCC--BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHH---TCCCCC--
T ss_pred ecCCCc--eeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccH--HHHHHHHHh---CCCCCC--
Confidence 654322 22346899999999999999999999999999999999999999965321 111111111 100000
Q ss_pred cchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1052 VDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1052 ~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.+. ......++.+++.+|++.||++||+++|+++|-+
T Consensus 234 -~~~---------~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~hp~ 270 (444)
T 3soa_A 234 -SPE---------WDTVTPEAKDLINKMLTINPSKRITAAEALKHPW 270 (444)
T ss_dssp -TTT---------TTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSCT
T ss_pred -ccc---------cccCCHHHHHHHHHHcCCChhHCCCHHHHhcCcc
Confidence 000 0111234566788999999999999999998743
No 109
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=1e-36 Score=339.04 Aligned_cols=253 Identities=23% Similarity=0.431 Sum_probs=199.4
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccC------hHHHHHHHHHHhcCCCCceeeEeeEEecCCce
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRG------SLSMKREIQTIGKIRHRNLVRLEDFWLRKDCG 891 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 891 (1109)
++|+..+.||+|+||+||+|+. .+++.||+|++........ ...+.+|++++++++||||+++++++....
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 5788899999999999999977 5789999999854433222 267899999999999999999999986544
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eEEeccCCCCeeeCCCCc-----EEEe
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPP--IVHRDIKPENILLDSEME-----PHIS 964 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~NIll~~~~~-----~kl~ 964 (1109)
++||||+++|+|.+++.... ..+++..++.++.|+++|++||| +.+ |+||||||+||+++.++. +||+
T Consensus 97 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~lH---~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~ 171 (287)
T 4f0f_A 97 RMVMEFVPCGDLYHRLLDKA--HPIKWSVKLRLMLDIALGIEYMQ---NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVA 171 (287)
T ss_dssp EEEEECCTTCBHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCSCCSGGGEEESCCCTTCSCCEEEC
T ss_pred eEEEEecCCCCHHHHHhccc--CCccHHHHHHHHHHHHHHHHHHH---hCCCCeecCCCCcceEEEeccCCCCceeEEeC
Confidence 79999999999999887543 35899999999999999999999 788 999999999999988776 9999
Q ss_pred cccCCcccCCCCCCceeeecccCcccccccccc--cCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhh
Q 001275 965 DFGIAKLLDKSPASTTSISVVGTIGYIAPENAF--TTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVW 1042 (1109)
Q Consensus 965 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~ 1042 (1109)
|||+++.... ......||+.|+|||++. ...++.++||||+||++|||++|+.||..................
T Consensus 172 Dfg~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 246 (287)
T 4f0f_A 172 DFGLSQQSVH-----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEG 246 (287)
T ss_dssp CCTTCBCCSS-----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSC
T ss_pred CCCccccccc-----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccC
Confidence 9999984432 233467999999999884 455689999999999999999999999754332221111111110
Q ss_pred cCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1043 SDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1043 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
... .. ......++.+++.+||+.||++||+++|+++.|+++
T Consensus 247 ~~~----~~-------------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 247 LRP----TI-------------PEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp CCC----CC-------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred CCC----CC-------------CcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 000 00 011123466788899999999999999999999864
No 110
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=1.7e-37 Score=348.20 Aligned_cols=270 Identities=22% Similarity=0.326 Sum_probs=204.4
Q ss_pred hCCCCCceeecccCeEEEEEEe-----CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecC--Cce
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-----GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK--DCG 891 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~ 891 (1109)
++|+..+.||+|+||.||+|++ .+++.||+|++...........+.+|++++++++||||+++++++... ...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 4578889999999999999983 468999999997665556667899999999999999999999999876 567
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKL 971 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~ 971 (1109)
++||||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 101 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~ 175 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLPKNK--NKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKA 175 (302)
T ss_dssp EEEEECCTTCBHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred EEEEEeCCCCcHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECccccccc
Confidence 99999999999999996543 34899999999999999999999 89999999999999999999999999999987
Q ss_pred cCCCCCC-ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcc--cc
Q 001275 972 LDKSPAS-TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTE--EI 1048 (1109)
Q Consensus 972 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~--~~ 1048 (1109)
....... .......||..|+|||.+.+..++.++||||+|+++|||++|+.|+..... ........... ..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~------~~~~~~~~~~~~~~~ 249 (302)
T 4e5w_A 176 IETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMA------LFLKMIGPTHGQMTV 249 (302)
T ss_dssp CCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH------HHHHHHCSCCGGGHH
T ss_pred ccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhh------HHhhccCCcccccCH
Confidence 7544322 222345788899999999999999999999999999999999988642211 00000000000 00
Q ss_pred ccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1049 NDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1049 ~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
..+ ..................++.+++.+||+.||++|||++|+++.|+++
T Consensus 250 ~~~-~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 300 (302)
T 4e5w_A 250 TRL-VNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL 300 (302)
T ss_dssp HHH-HHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHH-HHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 000 000000000000112234577788899999999999999999999864
No 111
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=2.7e-37 Score=353.73 Aligned_cols=256 Identities=21% Similarity=0.270 Sum_probs=203.1
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc----cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG----HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 893 (1109)
++|++.+.||+|+||+||+|.. .+++.||||++.... .......+.+|++++++++||||+++++++...+..++
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 103 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM 103 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 5789999999999999999976 468999999985432 12245679999999999999999999999999999999
Q ss_pred EEEeccCCCHHHHHhccC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCc---EEEecccCC
Q 001275 894 MYRYMENGSLRDVLHSIT-PPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEME---PHISDFGIA 969 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~---~kl~DfGla 969 (1109)
||||+++|+|.+++.... ....+++..+..++.|+++||+||| +.+|+||||||+||+++.++. +||+|||++
T Consensus 104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a 180 (351)
T 3c0i_A 104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVA 180 (351)
T ss_dssp EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCcce
Confidence 999999999998886532 2335899999999999999999999 889999999999999987654 999999999
Q ss_pred cccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccc
Q 001275 970 KLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEIN 1049 (1109)
Q Consensus 970 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1109)
+....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ... .........
T Consensus 181 ~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~---~~i~~~~~~-- 250 (351)
T 3c0i_A 181 IQLGESGL--VAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE---RLF---EGIIKGKYK-- 250 (351)
T ss_dssp EECCTTSC--BCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH---HHH---HHHHHTCCC--
T ss_pred eEecCCCe--eecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH---HHH---HHHHcCCCC--
Confidence 87754322 22345799999999999999999999999999999999999999965311 111 111110000
Q ss_pred cccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1050 DIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1050 ~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
..+.. ......++.+++.+|++.||++||++.|+++|-
T Consensus 251 --~~~~~--------~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp 288 (351)
T 3c0i_A 251 --MNPRQ--------WSHISESAKDLVRRMLMLDPAERITVYEALNHP 288 (351)
T ss_dssp --CCHHH--------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred --CCccc--------cccCCHHHHHHHHHHCCCChhHCcCHHHHhcCh
Confidence 00000 011123466788899999999999999999864
No 112
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=351.82 Aligned_cols=257 Identities=23% Similarity=0.349 Sum_probs=198.2
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcE----EEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAV----FAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~----vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 893 (1109)
++|+..++||+|+||+||+|... +++. ||+|.+...........+.+|++++++++||||+++++++.... .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~ 93 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEE
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceE
Confidence 57888999999999999999764 4443 57777655555566778999999999999999999999998654 789
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
|+||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 94 v~~~~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~ 168 (327)
T 3lzb_A 94 ITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168 (327)
T ss_dssp EECCCSSCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC-----
T ss_pred EEEecCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCcceeEcc
Confidence 999999999999998643 34899999999999999999999 8899999999999999999999999999998775
Q ss_pred CCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
............+|+.|+|||.+.+..++.++||||+||++|||++ |+.||...... .....+.... ...
T Consensus 169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~~~~~----~~~--- 239 (327)
T 3lzb_A 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSILEKGE----RLP--- 239 (327)
T ss_dssp -----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHTTC----CCC---
T ss_pred CccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHcCC----CCC---
Confidence 5444333444567889999999999999999999999999999999 99998654221 2222211110 000
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCC
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDAS 1101 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 1101 (1109)
. ......++.+++.+||+.||++||+++|+++.|+++.
T Consensus 240 ~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 277 (327)
T 3lzb_A 240 Q-----------PPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMA 277 (327)
T ss_dssp C-----------CTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred C-----------CccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 0 0111234667888999999999999999999998763
No 113
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=1e-37 Score=347.52 Aligned_cols=261 Identities=26% Similarity=0.379 Sum_probs=193.5
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
++|++.++||+|+||+||+|+... .||+|++..... ......+.+|++++++++||||+++++++ ..+..++||||
T Consensus 24 ~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e~ 100 (289)
T 3og7_A 24 GQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQW 100 (289)
T ss_dssp TSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEEC
T ss_pred cceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEEe
Confidence 678999999999999999998653 589999854432 23346789999999999999999999965 45668999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
+++++|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 101 ~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 175 (289)
T 3og7_A 101 CEGSSLYHHLHASE--TKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG 175 (289)
T ss_dssp CCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC----------
T ss_pred cCCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceeccccccccc
Confidence 99999999996543 35899999999999999999999 88999999999999999999999999999986654333
Q ss_pred CceeeecccCcccccccccc---cCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 978 STTSISVVGTIGYIAPENAF---TTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
........||+.|+|||.+. +..++.++||||+|+++|||++|+.||...... ......+...... ......
T Consensus 176 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~~~~~~~~~~~~~-~~~~~~--- 250 (289)
T 3og7_A 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR-DQIIEMVGRGSLS-PDLSKV--- 250 (289)
T ss_dssp --------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCH-HHHHHHHHHTSCC-CCTTSS---
T ss_pred cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchH-HHHHHHhcccccC-cchhhc---
Confidence 33334467999999999886 667889999999999999999999999653221 1122221111000 000000
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCC
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASV 1102 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 1102 (1109)
......++.+++.+||+.||++||+++|+++.|+++..
T Consensus 251 ----------~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 251 ----------RSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp ----------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred ----------cccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 01123456778889999999999999999999998853
No 114
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=1.3e-37 Score=343.17 Aligned_cols=251 Identities=26% Similarity=0.388 Sum_probs=191.0
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeeccc---ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGH---KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|+..+.||+|+||+||+|... ++.||||++..... ......+.+|++++++++||||+++++++...+..++||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 57888999999999999999876 88999998854332 233467899999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC---eEEeccCCCCeeeCC--------CCcEEEe
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPP---IVHRDIKPENILLDS--------EMEPHIS 964 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~---ivH~Dlk~~NIll~~--------~~~~kl~ 964 (1109)
||+++++|.+++... .+++..++.++.|+++|++||| +.+ |+||||||+||+++. ++.+||+
T Consensus 86 e~~~~~~L~~~~~~~----~~~~~~~~~i~~~l~~~l~~lH---~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~ 158 (271)
T 3dtc_A 86 EFARGGPLNRVLSGK----RIPPDILVNWAVQIARGMNYLH---DEAIVPIIHRDLKSSNILILQKVENGDLSNKILKIT 158 (271)
T ss_dssp ECCTTEEHHHHHTSS----CCCHHHHHHHHHHHHHHHHHHH---HSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEEC
T ss_pred EcCCCCCHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHH---hCCCCceeecCCchHHEEEecccccccccCcceEEc
Confidence 999999999998642 4899999999999999999999 666 999999999999986 6789999
Q ss_pred cccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcC
Q 001275 965 DFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSD 1044 (1109)
Q Consensus 965 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1044 (1109)
|||+++....... ....||+.|+|||.+.+..++.++||||+|+++|+|++|+.||....... ........
T Consensus 159 Dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-----~~~~~~~~ 229 (271)
T 3dtc_A 159 DFGLAREWHRTTK----MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLA-----VAYGVAMN 229 (271)
T ss_dssp CCCC-----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHH-----HHHHHHTS
T ss_pred cCCcccccccccc----cCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-----HHHhhhcC
Confidence 9999986643322 23579999999999999999999999999999999999999996532111 11111100
Q ss_pred ccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1045 TEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1045 ~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.... .. ......++.+++.+||+.||++||+++|++++|+++
T Consensus 230 ~~~~-~~-------------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 230 KLAL-PI-------------PSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp CCCC-CC-------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred CCCC-CC-------------CcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 0000 00 011123466788899999999999999999999863
No 115
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=1e-37 Score=345.94 Aligned_cols=255 Identities=22% Similarity=0.308 Sum_probs=193.3
Q ss_pred hCCCCCceeecccCeEEEEEEeCC----CcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGP----NAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 894 (1109)
++|+..+.||+|+||+||+|.... +..||+|++...........+.+|+.++++++||||+++++++. .+..++|
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~lv 93 (281)
T 1mp8_A 15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWII 93 (281)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEE
T ss_pred HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEEE
Confidence 578889999999999999997643 45799998755444445567899999999999999999999984 5678999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
|||+++|+|.+++.... ..+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 94 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 168 (281)
T 1mp8_A 94 MELCTLGELRSFLQVRK--YSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 168 (281)
T ss_dssp EECCTTEEHHHHHHHTT--TTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC---------
T ss_pred EecCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECccccccccCc
Confidence 99999999999997643 34899999999999999999999 88999999999999999999999999999987654
Q ss_pred CCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccc
Q 001275 975 SPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVD 1053 (1109)
Q Consensus 975 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1053 (1109)
... .......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... +....+... .....
T Consensus 169 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~--~~~~~i~~~--~~~~~----- 238 (281)
T 1mp8_A 169 STY-YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIGRIENG--ERLPM----- 238 (281)
T ss_dssp -----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHTT--CCCCC-----
T ss_pred ccc-cccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHH--HHHHHHHcC--CCCCC-----
Confidence 322 12233467889999999999999999999999999999997 88898654221 222111110 00000
Q ss_pred hhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1054 LSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
......++.+++.+|++.||++||+++|++++|+++
T Consensus 239 -----------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 274 (281)
T 1mp8_A 239 -----------PPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 274 (281)
T ss_dssp -----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -----------CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 011223466788899999999999999999999875
No 116
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=6.8e-38 Score=353.81 Aligned_cols=266 Identities=22% Similarity=0.308 Sum_probs=211.2
Q ss_pred HHHHHhhCCCCCceeecccCeEEEEEEe------CCCcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEE
Q 001275 813 QVIEATENLNAKHVIGRGAHGIVYKASL------GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFW 885 (1109)
Q Consensus 813 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~ 885 (1109)
+.....++|.+.+.||+|+||+||+|.. .+++.||||++...........+.+|++++.++ +||||+++++++
T Consensus 21 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 100 (316)
T 2xir_A 21 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGAC 100 (316)
T ss_dssp HHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEE
Confidence 3334457899999999999999999964 356889999986554444556789999999999 799999999998
Q ss_pred ecCC-ceeEEEEeccCCCHHHHHhccCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCC
Q 001275 886 LRKD-CGIIMYRYMENGSLRDVLHSITP-------------PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPE 951 (1109)
Q Consensus 886 ~~~~-~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~ 951 (1109)
...+ ..++||||+++|+|.+++..... ...+++..++.++.|+++||+||| +.+|+||||||+
T Consensus 101 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~ 177 (316)
T 2xir_A 101 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAAR 177 (316)
T ss_dssp CCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGG
T ss_pred ecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCcccccCccc
Confidence 7754 48999999999999999986543 123789999999999999999999 889999999999
Q ss_pred CeeeCCCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccc
Q 001275 952 NILLDSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKE 1030 (1109)
Q Consensus 952 NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~ 1030 (1109)
||+++.++.+||+|||+++...............||+.|+|||++.+..++.++||||+|+++|||++ |+.||......
T Consensus 178 Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~ 257 (316)
T 2xir_A 178 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID 257 (316)
T ss_dssp GEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCS
T ss_pred eEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchh
Confidence 99999999999999999987755444333444678899999999999999999999999999999998 99998653221
Q ss_pred cccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1031 RTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
......+.... .... ......++.+++.+||+.||++||+++|++++|+.+
T Consensus 258 -~~~~~~~~~~~--~~~~----------------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 308 (316)
T 2xir_A 258 -EEFCRRLKEGT--RMRA----------------PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 308 (316)
T ss_dssp -HHHHHHHHHTC--CCCC----------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -HHHHHHhccCc--cCCC----------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11111111100 0000 001123466788899999999999999999999875
No 117
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=364.10 Aligned_cols=309 Identities=23% Similarity=0.213 Sum_probs=268.4
Q ss_pred cCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccc
Q 001275 87 LGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRI 166 (1109)
Q Consensus 87 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l 166 (1109)
+|..+ .+++++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..+.++
T Consensus 26 ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 26 VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 45544 3589999999999998888999999999999999999998889999999999999999999995555667899
Q ss_pred cccceecccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccc
Q 001275 167 LGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDV 246 (1109)
Q Consensus 167 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 246 (1109)
++|++|+|++|++++..|..|.++++|++|++++|.+++..|..|+++++|++|+|++|++++..+..|.++++|+.|++
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 99999999999999888999999999999999999999888899999999999999999999888888999999999999
Q ss_pred cCcccCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCC
Q 001275 247 GDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGK 326 (1109)
Q Consensus 247 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 326 (1109)
++|++++..+..+..+++|++|++++|.+.+.++..+....+|+.|++++|+++...+..|..+++|+.|+|++|.+++.
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc
Confidence 99999988888888899999999999888777777776677888888888888865556788888888888888888877
Q ss_pred CCCccccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCC
Q 001275 327 IPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLG 397 (1109)
Q Consensus 327 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 397 (1109)
.+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 77788888888888888888888778888888888888888888886666666777778888888777764
No 118
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-36 Score=354.47 Aligned_cols=351 Identities=19% Similarity=0.133 Sum_probs=231.4
Q ss_pred cCCCCCCCCCCceeeeEEecCCCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeecc
Q 001275 48 ISSWNSSDSTPCQWVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLS 127 (1109)
Q Consensus 48 l~sW~~~~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 127 (1109)
+++|.....|||.|.++.|.....+| ............-..++++++|++++|.++...+..+..+++|++|+|+
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEESCEE-----CSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceeeeee-----ecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 57888766555556666664222122 2212122222233457888999999998885444447888999999999
Q ss_pred CccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeecccccCCCCc
Q 001275 128 TNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTI 207 (1109)
Q Consensus 128 ~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 207 (1109)
+|.+++..+..|+++++|++|+|++|.+++..|..+.++++|++|++++|+++...+..|+++++|++|++++|++++..
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99998777778899999999999999988777777888888888888888888554455688888888888888888777
Q ss_pred ccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCCCCccccccc
Q 001275 208 PESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCS 287 (1109)
Q Consensus 208 p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 287 (1109)
|..|+++++|++|++++|++++. .+..+++|+.|++++|.+++. ...++|++|++++|.++.. +.. ..+
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~ 226 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNV 226 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCS
T ss_pred hhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccc
Confidence 77788888888888888888765 355667778888888877643 2234677777777777643 222 235
Q ss_pred CCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccEEEcc
Q 001275 288 SLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELF 367 (1109)
Q Consensus 288 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 367 (1109)
+|+.|++++|++++. ..++.+++|++|++++|.+++..|..|..+++|+.|+|++|++++ +|..+..+++|++|+|+
T Consensus 227 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECC
T ss_pred cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECC
Confidence 667777777776643 456666667777777776666666666666666666666666663 45455566666666666
Q ss_pred CccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcc
Q 001275 368 DNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSG 421 (1109)
Q Consensus 368 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 421 (1109)
+|+++ .+|..+..+++|++|++++|++++. + +..+++|+.|++++|++++
T Consensus 304 ~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 304 HNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 66666 3555556666666666666666533 1 4445555555555555543
No 119
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=3.6e-37 Score=364.65 Aligned_cols=249 Identities=26% Similarity=0.344 Sum_probs=201.8
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCC-ceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKD-CGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~lv~e~ 897 (1109)
++|...+.||+|+||+||+|... ++.||||++... .....+.+|++++++++||||+++++++...+ ..++||||
T Consensus 193 ~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~ 268 (450)
T 1k9a_A 193 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 268 (450)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSC---TTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEEC
T ss_pred HHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCc---hHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEe
Confidence 56788899999999999999887 789999998533 24568999999999999999999999987765 78999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
+++|+|.++++... ...+++..++.++.|+++||+||| +.+|+||||||+||++++++.+||+|||+++......
T Consensus 269 ~~~g~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~- 343 (450)
T 1k9a_A 269 MAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ- 343 (450)
T ss_dssp CTTCBHHHHHHHHC-TTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC----
T ss_pred cCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccccc-
Confidence 99999999998753 234789999999999999999999 8899999999999999999999999999998553221
Q ss_pred CceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchhh
Q 001275 978 STTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSL 1056 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 1056 (1109)
....+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... .+....+.. .. .. .
T Consensus 344 ----~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~--~~~~~~i~~---~~-~~----~--- 406 (450)
T 1k9a_A 344 ----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL--KDVVPRVEK---GY-KM----D--- 406 (450)
T ss_dssp -------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCT--TTHHHHHHT---TC-CC----C---
T ss_pred ----cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHc---CC-CC----C---
Confidence 12367889999999999999999999999999999998 9999864321 122221111 00 00 0
Q ss_pred hHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1057 MEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1057 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.......++.+++.+||+.||++||+++|+++.|+++
T Consensus 407 -------~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i 443 (450)
T 1k9a_A 407 -------APDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHI 443 (450)
T ss_dssp -------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -------CCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 0011234567788899999999999999999999875
No 120
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=347.27 Aligned_cols=253 Identities=29% Similarity=0.464 Sum_probs=195.4
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEec
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRYM 898 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 898 (1109)
++|++.+.||+|+||+||+|+.. ++.||||++.. ......+.+|++++++++||||+++++++. +..++||||+
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~ 81 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIES---ESERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYA 81 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSS---TTHHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECC
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecC---hhHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcC
Confidence 56888899999999999999886 78899998742 234567899999999999999999999876 4589999999
Q ss_pred cCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCc-EEEecccCCcccCCCCC
Q 001275 899 ENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEME-PHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 899 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~-~kl~DfGla~~~~~~~~ 977 (1109)
++|+|.++++.......+++..++.++.|+++||+|||..+..+|+||||||+||+++.++. +||+|||++......
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~-- 159 (307)
T 2eva_A 82 EGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-- 159 (307)
T ss_dssp TTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC---------
T ss_pred CCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc--
Confidence 99999999987654456889999999999999999999322289999999999999988886 799999999765432
Q ss_pred CceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchhhh
Q 001275 978 STTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLM 1057 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 1057 (1109)
.....||+.|+|||++.+..++.++||||||+++|||++|+.||........... ....... ....
T Consensus 160 ---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~---~~~~~~~--~~~~------ 225 (307)
T 2eva_A 160 ---MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIM---WAVHNGT--RPPL------ 225 (307)
T ss_dssp --------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHH---HHHHTTC--CCCC------
T ss_pred ---cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHH---HHHhcCC--CCCc------
Confidence 1234689999999999999999999999999999999999999965322211111 1110000 0000
Q ss_pred HHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1058 EEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1058 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.......+.+++.+||+.||++||+++|++++|+.+
T Consensus 226 -------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 261 (307)
T 2eva_A 226 -------IKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHL 261 (307)
T ss_dssp -------BTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -------ccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 011123466788899999999999999999999865
No 121
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=1.7e-37 Score=356.55 Aligned_cols=255 Identities=23% Similarity=0.277 Sum_probs=194.5
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
.++|.+.+.||+|+||+||+|+.. +++.||||++... ......+.+|+.++++++||||+++++++...+..++|||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 96 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERG--AAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIME 96 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESS--TTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecC--ccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEE
Confidence 357899999999999999999775 7899999998532 3334678899999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCc--EEEecccCCcccCC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEME--PHISDFGIAKLLDK 974 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~--~kl~DfGla~~~~~ 974 (1109)
|+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+++....
T Consensus 97 ~~~~~~L~~~l~~~~---~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~ 170 (361)
T 3uc3_A 97 YASGGELYERICNAG---RFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVL 170 (361)
T ss_dssp CCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC-----
T ss_pred eCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCccccccc
Confidence 999999999997644 3899999999999999999999 899999999999999987765 99999999974432
Q ss_pred CCCCceeeecccCcccccccccccCCCCcc-CcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccc
Q 001275 975 SPASTTSISVVGTIGYIAPENAFTTAKSKE-SDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVD 1053 (1109)
Q Consensus 975 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1053 (1109)
.. ......||+.|+|||++.+..++.+ +||||+||++|+|++|+.||..... ....................
T Consensus 171 ~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-~~~~~~~~~~~~~~~~~~~~--- 243 (361)
T 3uc3_A 171 HS---QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEE-PRDYRKTIQRILSVKYSIPD--- 243 (361)
T ss_dssp -------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC-----CCCHHHHHHHHHTTCCCCCT---
T ss_pred cC---CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCcc-HHHHHHHHHHHhcCCCCCCC---
Confidence 21 2234579999999999988887655 8999999999999999999965322 22222222222211111100
Q ss_pred hhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1054 LSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
......++.+++.+||+.||++|||+.|+++|-+
T Consensus 244 -----------~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~ 277 (361)
T 3uc3_A 244 -----------DIRISPECCHLISRIFVADPATRISIPEIKTHSW 277 (361)
T ss_dssp -----------TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTSHH
T ss_pred -----------cCCCCHHHHHHHHHHccCChhHCcCHHHHHhCcc
Confidence 0011234567888999999999999999999854
No 122
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=2.9e-37 Score=341.45 Aligned_cols=257 Identities=23% Similarity=0.316 Sum_probs=207.0
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
.++|++.+.||+|+||.||+|... +++.||+|++...........+.+|++++++++||||+++++++...+..++|||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence 467899999999999999999775 6899999998655544556789999999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSP 976 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~ 976 (1109)
|+++++|.+++... ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||.+.......
T Consensus 86 ~~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 159 (276)
T 2yex_A 86 YCSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNN 159 (276)
T ss_dssp CCTTEEGGGGSBTT---TBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred ecCCCcHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCc
Confidence 99999999998653 34899999999999999999999 8899999999999999999999999999998654332
Q ss_pred CCceeeecccCcccccccccccCCC-CccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 977 ASTTSISVVGTIGYIAPENAFTTAK-SKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 977 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
.........||+.|+|||.+.+..+ +.++||||+|+++|||++|+.||............+... .... ..
T Consensus 160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~----~~~~----~~- 230 (276)
T 2yex_A 160 RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK----KTYL----NP- 230 (276)
T ss_dssp EECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTT----CTTS----TT-
T ss_pred chhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhc----cccc----Cc-
Confidence 2222334578999999999987775 789999999999999999999997543322222222110 0000 00
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
......++.+++.+|++.||++||+++|++++-+
T Consensus 231 ---------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~ 264 (276)
T 2yex_A 231 ---------WKKIDSAPLALLHKILVENPSARITIPDIKKDRW 264 (276)
T ss_dssp ---------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTT
T ss_pred ---------hhhcCHHHHHHHHHHCCCCchhCCCHHHHhcCcc
Confidence 0111234566888999999999999999998754
No 123
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=347.16 Aligned_cols=251 Identities=24% Similarity=0.319 Sum_probs=194.0
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccc-------------------------cChHHHHHHHHHHhc
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHK-------------------------RGSLSMKREIQTIGK 872 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-------------------------~~~~~~~~E~~~l~~ 872 (1109)
++|.+.+.||+|+||+||+|.. .+++.||||++...... .....+.+|++++++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~ 92 (298)
T 2zv2_A 13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK 92 (298)
T ss_dssp TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence 5788899999999999999976 46889999998543211 123568899999999
Q ss_pred CCCCceeeEeeEEec--CCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCC
Q 001275 873 IRHRNLVRLEDFWLR--KDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKP 950 (1109)
Q Consensus 873 l~h~niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~ 950 (1109)
++||||+++++++.. .+..++||||+++|+|.++... ..+++..+..++.|+++||+||| +.+|+||||||
T Consensus 93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp 165 (298)
T 2zv2_A 93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL----KPLSEDQARFYFQDLIKGIEYLH---YQKIIHRDIKP 165 (298)
T ss_dssp CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS----SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCG
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCH
Confidence 999999999999986 5678999999999999876543 35899999999999999999999 88999999999
Q ss_pred CCeeeCCCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCC---CCccCcchhhHHHHHHHHhCCCCCCCC
Q 001275 951 ENILLDSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTA---KSKESDVYSYGVVLLELITRKKALDPS 1027 (1109)
Q Consensus 951 ~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~sDvwSlGvil~elltg~~p~~~~ 1027 (1109)
+||+++.++.+||+|||+++...... .......||+.|+|||.+.+.. ++.++||||+||++|||++|+.||...
T Consensus 166 ~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~ 243 (298)
T 2zv2_A 166 SNLLVGEDGHIKIADFGVSNEFKGSD--ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE 243 (298)
T ss_dssp GGEEECTTSCEEECCCTTCEECSSSS--CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred HHEEECCCCCEEEecCCCcccccccc--ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCc
Confidence 99999999999999999998765432 2223457999999999988765 378899999999999999999999643
Q ss_pred ccccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1028 YKERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
.. ..+............ + ......++.+++.+||+.||++||+++|+++|-
T Consensus 244 ~~-----~~~~~~~~~~~~~~~---~-----------~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~hp 294 (298)
T 2zv2_A 244 RI-----MCLHSKIKSQALEFP---D-----------QPDIAEDLKDLITRMLDKNPESRIVVPEIKLHP 294 (298)
T ss_dssp SH-----HHHHHHHHHCCCCCC---S-----------SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTCH
T ss_pred cH-----HHHHHHHhcccCCCC---C-----------ccccCHHHHHHHHHHhhcChhhCCCHHHHhcCc
Confidence 21 111111111100000 0 011123466788899999999999999998763
No 124
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=1.3e-36 Score=340.13 Aligned_cols=260 Identities=15% Similarity=0.185 Sum_probs=205.4
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCceeEEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
++|.+.+.||+|+||+||+|.. .+++.||||++.... ....+.+|+++++++ +|+|++++++++......++|||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS---DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT---TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC---ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 5788999999999999999975 678999999885332 234578899999999 79999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCc-----EEEecccCCcc
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEME-----PHISDFGIAKL 971 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~-----~kl~DfGla~~ 971 (1109)
|+ +++|.+++.... ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++. +||+|||+++.
T Consensus 87 ~~-~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~ 160 (298)
T 1csn_A 87 LL-GPSLEDLLDLCG--RKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKF 160 (298)
T ss_dssp CC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEE
T ss_pred ec-CCCHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccc
Confidence 99 999999998643 34899999999999999999999 899999999999999987776 99999999987
Q ss_pred cCCCCCC-----ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcc
Q 001275 972 LDKSPAS-----TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTE 1046 (1109)
Q Consensus 972 ~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1109)
....... .......||+.|+|||++.+..++.++|||||||++|||++|+.||........ ............
T Consensus 161 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~--~~~~~~~~~~~~ 238 (298)
T 1csn_A 161 YRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATN--KQKYERIGEKKQ 238 (298)
T ss_dssp SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCH--HHHHHHHHHHHH
T ss_pred cccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhcccc--HHHHHHHHhhcc
Confidence 6543221 122346799999999999999999999999999999999999999975322111 111110000000
Q ss_pred ccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1047 EINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1047 ~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
... ... .......++.+++.+||+.||++||+++|+++.|+++
T Consensus 239 ------~~~-~~~----~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~ 281 (298)
T 1csn_A 239 ------STP-LRE----LCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKV 281 (298)
T ss_dssp ------HSC-HHH----HTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred ------Ccc-HHH----HHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHH
Confidence 000 000 0011234577788899999999999999999999875
No 125
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=8.4e-37 Score=347.02 Aligned_cols=259 Identities=15% Similarity=0.214 Sum_probs=204.9
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCceeEEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
++|.+.+.||+|+||+||+|.. .+++.||||++.... ....+.+|+++++++ +||||+++++++...+..++|||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS---RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC---SSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc---chHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 5788899999999999999976 578999999885432 234588999999999 99999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCc-----EEEecccCCcc
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEME-----PHISDFGIAKL 971 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~-----~kl~DfGla~~ 971 (1109)
|+ +|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+++.
T Consensus 86 ~~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~ 159 (330)
T 2izr_A 86 LL-GPSLEDLFDLCD--RTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKE 159 (330)
T ss_dssp CC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEE
T ss_pred eC-CCCHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEccccee
Confidence 99 999999998642 35899999999999999999999 889999999999999998887 99999999987
Q ss_pred cCCCCCCc-----eeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcc
Q 001275 972 LDKSPAST-----TSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTE 1046 (1109)
Q Consensus 972 ~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1109)
+....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...... +...........
T Consensus 160 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~--~~~~~~~~i~~~-- 235 (330)
T 2izr_A 160 YIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD--TLKERYQKIGDT-- 235 (330)
T ss_dssp SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCS--SHHHHHHHHHHH--
T ss_pred eecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccc--cHHHHHHHHHhh--
Confidence 64432211 123468999999999999999999999999999999999999999754211 111111111000
Q ss_pred ccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1047 EINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1047 ~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.. ............++.+++.+||+.||.+||+++++++.|+++
T Consensus 236 --------~~--~~~~~~~~~~~p~~~~li~~~l~~~p~~RP~~~~l~~~l~~~ 279 (330)
T 2izr_A 236 --------KR--ATPIEVLCENFPEMATYLRYVRRLDFFEKPDYDYLRKLFTDL 279 (330)
T ss_dssp --------HH--HSCHHHHTTTCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred --------hc--cCCHHHHhccChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 00 000000001112677888899999999999999999998754
No 126
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=1e-36 Score=347.82 Aligned_cols=248 Identities=19% Similarity=0.249 Sum_probs=204.4
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|+..+.||+|+||.||+|+.. +++.||+|++.... .......+.+|++++++++||||+++++++.+.+..|+||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 57889999999999999999775 68999999985432 2234567889999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 121 e~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~ 194 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRIG---RFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR 194 (350)
T ss_dssp ECCTTCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred cCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceeccCC
Confidence 9999999999998654 3899999999999999999999 899999999999999999999999999999876432
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
.....||+.|+|||++.+..++.++||||+||++|||++|+.||..... ...............
T Consensus 195 -----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~~i~~~~~~~p------ 258 (350)
T 1rdq_E 195 -----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP-----IQIYEKIVSGKVRFP------ 258 (350)
T ss_dssp -----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHCCCCCC------
T ss_pred -----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH-----HHHHHHHHcCCCCCC------
Confidence 1235799999999999999999999999999999999999999964321 111111111110000
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHHhh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPN-----MRDVVRQLV 1098 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-----~~evl~~L~ 1098 (1109)
. ....++.+++.+|++.||++||+ ++|+++|-.
T Consensus 259 -------~---~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~~ 296 (350)
T 1rdq_E 259 -------S---HFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKW 296 (350)
T ss_dssp -------T---TCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGG
T ss_pred -------C---CCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhCcC
Confidence 0 11234566788999999999998 899998765
No 127
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-37 Score=352.83 Aligned_cols=255 Identities=22% Similarity=0.314 Sum_probs=195.9
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCC--CceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRH--RNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|++.+.||+|+||+||+|...+++.||||++..... ......+.+|++++.+++| +||+++++++...+..++||
T Consensus 9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 88 (343)
T 3dbq_A 9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 88 (343)
T ss_dssp CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence 56888999999999999999988899999999864432 2334678999999999976 99999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
| +.+|+|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+||+++ ++.+||+|||+++.....
T Consensus 89 e-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~ 160 (343)
T 3dbq_A 89 E-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 160 (343)
T ss_dssp C-CCSEEHHHHHHHSC---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC---
T ss_pred e-CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcEEEeecccccccCcc
Confidence 9 56789999998743 4899999999999999999999 88999999999999997 678999999999877544
Q ss_pred CCCceeeecccCccccccccccc-----------CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcC
Q 001275 976 PASTTSISVVGTIGYIAPENAFT-----------TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSD 1044 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1044 (1109)
..........||+.|+|||++.+ ..++.++|||||||++|||++|+.||......... .......
T Consensus 161 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~----~~~~~~~ 236 (343)
T 3dbq_A 161 TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISK----LHAIIDP 236 (343)
T ss_dssp ---------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHH----HHHHHCT
T ss_pred cccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHH----HHHHhcC
Confidence 33333345689999999998865 67899999999999999999999999643222111 1111111
Q ss_pred ccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1045 TEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1045 ~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
.... .. .. ....++.+++.+||+.||++|||++|+++|-+-
T Consensus 237 ~~~~-~~----------~~---~~~~~l~~li~~~L~~dp~~Rpt~~e~l~hp~~ 277 (343)
T 3dbq_A 237 NHEI-EF----------PD---IPEKDLQDVLKCCLKRDPKQRISIPELLAHPYV 277 (343)
T ss_dssp TSCC-CC----------CC---CSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHH
T ss_pred Cccc-CC----------cc---cCCHHHHHHHHHHcCCChhHCCCHHHHHhCccc
Confidence 0000 00 00 011345678889999999999999999988653
No 128
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=1.8e-37 Score=371.33 Aligned_cols=257 Identities=23% Similarity=0.317 Sum_probs=208.6
Q ss_pred hCCCCCceeecccCeEEEEEEeCC-CcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGP-NAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
.+|...++||+|+||.||+|.+.. +..||||++... .....++.+|++++++++||||++++++|...+..++||||
T Consensus 220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~ 297 (495)
T 1opk_A 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED--TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297 (495)
T ss_dssp GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSS--SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCc--ccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence 567888999999999999998764 889999998533 33467899999999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
+++|+|.++++... ...+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 298 ~~~g~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~- 372 (495)
T 1opk_A 298 MTYGNLLDYLRECN-RQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT- 372 (495)
T ss_dssp CTTCBHHHHHHHSC-TTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC-
T ss_pred cCCCCHHHHHHhcC-cCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeecccceeccCCc-
Confidence 99999999998643 345899999999999999999999 8899999999999999999999999999998764322
Q ss_pred CceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchhh
Q 001275 978 STTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSL 1056 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 1056 (1109)
........+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... ..+...+..... .
T Consensus 373 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~--~~~~~~~~~~~~----~-------- 438 (495)
T 1opk_A 373 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL--SQVYELLEKDYR----M-------- 438 (495)
T ss_dssp EECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG--GGHHHHHHTTCC----C--------
T ss_pred eeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCCC----C--------
Confidence 122223456789999999999999999999999999999999 8888864321 122222111100 0
Q ss_pred hHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCC
Q 001275 1057 MEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASV 1102 (1109)
Q Consensus 1057 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 1102 (1109)
........++.+++.+||+.||++||+++|+++.|+.+..
T Consensus 439 ------~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~ 478 (495)
T 1opk_A 439 ------ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ 478 (495)
T ss_dssp ------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred ------CCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHh
Confidence 0001122456678889999999999999999999998743
No 129
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=7.8e-37 Score=353.02 Aligned_cols=254 Identities=21% Similarity=0.274 Sum_probs=203.4
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
++|.+.+.||+|+||+||+|... +++.||+|++... .......+.+|++++++++||||+++++++.+.+..++||||
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTP-YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-SHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEeccc-chhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 57899999999999999999765 6889999988533 233345789999999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCC--CCcEEEecccCCcccCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDS--EMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~--~~~~kl~DfGla~~~~~~ 975 (1109)
+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||+++.....
T Consensus 130 ~~gg~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~ 204 (387)
T 1kob_A 130 LSGGELFDRIAAED--YKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD 204 (387)
T ss_dssp CCCCBHHHHTTCTT--CCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT
T ss_pred CCCCcHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceecCCC
Confidence 99999999987532 34899999999999999999999 889999999999999974 467999999999877543
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
. ......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ... ........... +..
T Consensus 205 ~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~--~~~---~~~i~~~~~~~----~~~ 272 (387)
T 1kob_A 205 E---IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD--LET---LQNVKRCDWEF----DED 272 (387)
T ss_dssp S---CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--HHH---HHHHHHCCCCC----CSS
T ss_pred c---ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH--HHH---HHHHHhCCCCC----Ccc
Confidence 2 22345799999999999999999999999999999999999999965321 111 11111110000 000
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
. ......++.+++.+|++.||++||+++|+++|-+
T Consensus 273 ~--------~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~hp~ 307 (387)
T 1kob_A 273 A--------FSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPW 307 (387)
T ss_dssp T--------TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTSTT
T ss_pred c--------cccCCHHHHHHHHHHcCCChhHCcCHHHHhhCcc
Confidence 0 0111234667888999999999999999999754
No 130
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=8.3e-38 Score=355.92 Aligned_cols=261 Identities=21% Similarity=0.316 Sum_probs=208.4
Q ss_pred hhCCCCCceeecccCeEEEEEEeCC------CcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCc
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLGP------NAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDC 890 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 890 (1109)
.++|...+.||+|+||+||+|.... ...||+|.+...........+.+|+++++++ +||||+++++++...+.
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 124 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGP 124 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCc
Confidence 4678889999999999999997642 2479999986554444566789999999999 89999999999999999
Q ss_pred eeEEEEeccCCCHHHHHhccCC-----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCC
Q 001275 891 GIIMYRYMENGSLRDVLHSITP-----------PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEM 959 (1109)
Q Consensus 891 ~~lv~e~~~~gsL~~~l~~~~~-----------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~ 959 (1109)
.++||||+++|+|.+++..... ...+++..++.++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 125 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~ 201 (333)
T 2i1m_A 125 VLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLTNGH 201 (333)
T ss_dssp CEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGCEEEGGG
T ss_pred eEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceEEECCCC
Confidence 9999999999999999975321 235799999999999999999999 88999999999999999999
Q ss_pred cEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHH
Q 001275 960 EPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWV 1038 (1109)
Q Consensus 960 ~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~ 1038 (1109)
.+||+|||+++...............+|+.|+|||.+.+..++.++||||||+++|||++ |..||...... ......+
T Consensus 202 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~-~~~~~~~ 280 (333)
T 2i1m_A 202 VAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVN-SKFYKLV 280 (333)
T ss_dssp EEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSS-HHHHHHH
T ss_pred eEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchh-HHHHHHH
Confidence 999999999986654433333334567889999999999999999999999999999999 88888643221 1111111
Q ss_pred HHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1039 RSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
....... .+ .....++.+++.+||+.||++||+++|++++|++.
T Consensus 281 ~~~~~~~-------~~-----------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~ 324 (333)
T 2i1m_A 281 KDGYQMA-------QP-----------AFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQ 324 (333)
T ss_dssp HHTCCCC-------CC-----------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred hcCCCCC-------CC-----------CCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHH
Confidence 1111000 00 01123466788899999999999999999999865
No 131
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=2.6e-37 Score=361.59 Aligned_cols=265 Identities=22% Similarity=0.251 Sum_probs=205.8
Q ss_pred HHHHHhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCC
Q 001275 813 QVIEATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKD 889 (1109)
Q Consensus 813 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 889 (1109)
+.....++|+..++||+|+||+||+|+.. +++.||+|++.... .......+.+|..++..++||||++++++|.+.+
T Consensus 68 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~ 147 (437)
T 4aw2_A 68 QMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDN 147 (437)
T ss_dssp HHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSS
T ss_pred cccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCC
Confidence 33344578999999999999999999876 47899999985432 1223345889999999999999999999999999
Q ss_pred ceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCC
Q 001275 890 CGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIA 969 (1109)
Q Consensus 890 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla 969 (1109)
..|+||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+|
T Consensus 148 ~~~lV~Ey~~gg~L~~~l~~~~--~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~DFGla 222 (437)
T 4aw2_A 148 NLYLVMDYYVGGDLLTLLSKFE--DRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSC 222 (437)
T ss_dssp EEEEEECCCTTCBHHHHHHTTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred EEEEEEecCCCCcHHHHHHHcc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcchhhh
Confidence 9999999999999999997632 34899999999999999999999 899999999999999999999999999999
Q ss_pred cccCCCCCCceeeecccCcccccccccc-----cCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcC
Q 001275 970 KLLDKSPASTTSISVVGTIGYIAPENAF-----TTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSD 1044 (1109)
Q Consensus 970 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1044 (1109)
+....... ......+||+.|+|||++. ...++.++||||+||++|||++|+.||...... .........
T Consensus 223 ~~~~~~~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~-----~~~~~i~~~ 296 (437)
T 4aw2_A 223 LKLMEDGT-VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLV-----ETYGKIMNH 296 (437)
T ss_dssp EECCTTSC-EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHHHHHTH
T ss_pred hhcccCCC-cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChh-----HHHHhhhhc
Confidence 87644322 2223468999999999987 566899999999999999999999999653211 111111100
Q ss_pred ccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCC--CCCHHHHHHHhhh
Q 001275 1045 TEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSN--RPNMRDVVRQLVD 1099 (1109)
Q Consensus 1045 ~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--RPs~~evl~~L~~ 1099 (1109)
.... . -+ ........++.+++.+|++.+|++ ||+++|+++|-+-
T Consensus 297 ~~~~-~--~p--------~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~Hpff 342 (437)
T 4aw2_A 297 KERF-Q--FP--------TQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKHPFF 342 (437)
T ss_dssp HHHC-C--CC--------SSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTSGGG
T ss_pred cccc-c--CC--------cccccCCHHHHHHHHHHhcccccccCCCCHHHHhCCCcc
Confidence 0000 0 00 000011233556777999988888 9999999998653
No 132
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=3.9e-38 Score=353.48 Aligned_cols=272 Identities=24% Similarity=0.299 Sum_probs=189.3
Q ss_pred hhCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhc--CCCCceeeEeeEEecCC----ce
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGK--IRHRNLVRLEDFWLRKD----CG 891 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~----~~ 891 (1109)
.++|.+.+.||+|+||+||+|+.. ++.||||++.. .....+.+|.+++.. ++||||+++++++...+ ..
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~----~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 76 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSS----REERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQL 76 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-----TTHHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEE
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEecc----cchhhHHHHHHHHHHHhccCcceeeeeeecccCCCcccee
Confidence 367999999999999999999876 88999998742 334567788888888 79999999999998776 68
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCCeEEeccCCCCeeeCCCCcEEEecc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDC-----DPPIVHRDIKPENILLDSEMEPHISDF 966 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-----~~~ivH~Dlk~~NIll~~~~~~kl~Df 966 (1109)
++||||+++|+|.++++.. .+++..++.++.|++.|++|||... +.+|+||||||+||+++.++.+||+||
T Consensus 77 ~lv~e~~~~g~L~~~l~~~----~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl~DF 152 (303)
T 3gxj_A 77 WLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL 152 (303)
T ss_dssp EEEEECCTTCCHHHHHHHC----CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCTTCCC-BCCC
T ss_pred EEEEeccCCCCHHHHHhcc----CcchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECCCCCEEEeec
Confidence 9999999999999999764 3778889999999999999999322 678999999999999999999999999
Q ss_pred cCCcccCCCCCCc--eeeecccCcccccccccccC------CCCccCcchhhHHHHHHHHhC----------CCCCCCCc
Q 001275 967 GIAKLLDKSPAST--TSISVVGTIGYIAPENAFTT------AKSKESDVYSYGVVLLELITR----------KKALDPSY 1028 (1109)
Q Consensus 967 Gla~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~sDvwSlGvil~elltg----------~~p~~~~~ 1028 (1109)
|+++......... ......||+.|+|||++.+. .++.++|||||||++|||++| +.||....
T Consensus 153 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~ 232 (303)
T 3gxj_A 153 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV 232 (303)
T ss_dssp CC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTC
T ss_pred CcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccccC
Confidence 9998664433221 12334799999999988776 344689999999999999999 55554322
Q ss_pred cccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCCCCCCC
Q 001275 1029 KERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASVPMTSK 1107 (1109)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~ 1107 (1109)
................ ...+...... ........+.+++.+||+.||++|||++|+++.|+++..+...|
T Consensus 233 ~~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~~~~~ 302 (303)
T 3gxj_A 233 PSDPSVEEMRKVVCEQ------KLRPNIPNRW---QSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEGIK 302 (303)
T ss_dssp C-CCCCC-CHHHHTTS------CCCCCCCGGG---GSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC----
T ss_pred CCCccHHHHHHHHHHh------hcCCCccccc---cchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhhcccC
Confidence 1111111111111000 0011110100 01245567888999999999999999999999999996665443
No 133
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=3.6e-37 Score=350.37 Aligned_cols=253 Identities=23% Similarity=0.312 Sum_probs=203.2
Q ss_pred HhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCcee
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGI 892 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 892 (1109)
..++|...++||+|+||+||+|+.. +++.||+|++.... .......+.+|.+++.++ +||||+++++++.+.+..|
T Consensus 15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~ 94 (345)
T 1xjd_A 15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLF 94 (345)
T ss_dssp -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEE
Confidence 4578999999999999999999875 68999999986532 233456678899999887 9999999999999999999
Q ss_pred EEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCccc
Q 001275 893 IMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLL 972 (1109)
Q Consensus 893 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~ 972 (1109)
+||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 95 lv~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~ 168 (345)
T 1xjd_A 95 FVMEYLNGGDLMYHIQSCH---KFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKEN 168 (345)
T ss_dssp EEEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChhhhhc
Confidence 9999999999999998643 3899999999999999999999 889999999999999999999999999999864
Q ss_pred CCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 973 DKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 973 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
..... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||..... . ...............
T Consensus 169 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~---~~~~~i~~~~~~~p~-- 239 (345)
T 1xjd_A 169 MLGDA--KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE--E---ELFHSIRMDNPFYPR-- 239 (345)
T ss_dssp CCTTC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--H---HHHHHHHHCCCCCCT--
T ss_pred ccCCC--cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH--H---HHHHHHHhCCCCCCc--
Confidence 33221 22346899999999999999999999999999999999999999964321 1 111111111100000
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHH-HHHHHhh
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMR-DVVRQLV 1098 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~-evl~~L~ 1098 (1109)
.. ..++.+++.+|++.||++||++. |+++|-.
T Consensus 240 -----------~~---s~~~~~li~~lL~~dp~~R~~~~~~i~~hp~ 272 (345)
T 1xjd_A 240 -----------WL---EKEAKDLLVKLFVREPEKRLGVRGDIRQHPL 272 (345)
T ss_dssp -----------TS---CHHHHHHHHHHSCSSGGGSBTTBSCGGGSGG
T ss_pred -----------cc---CHHHHHHHHHHhcCCHhHcCCChHHHHcCcc
Confidence 11 13455677899999999999998 7776543
No 134
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=8.7e-37 Score=347.92 Aligned_cols=256 Identities=22% Similarity=0.272 Sum_probs=201.6
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc--ccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCceeEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH--KRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 894 (1109)
++|...+.||+|+||.||+|+.. +++.||+|++..... ......+.+|..++.++ +||||+++++++...+..|+|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 56888999999999999999775 588999999865432 22345688999999988 899999999999999999999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
|||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 89 ~e~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~ 162 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQR---KLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 162 (345)
T ss_dssp ECCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCC
T ss_pred EeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEeccccccccC
Confidence 99999999999997643 4899999999999999999999 88999999999999999999999999999986433
Q ss_pred CCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCcccc----ccHHHHHHHhhcCcccccc
Q 001275 975 SPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKER----TDIVGWVRSVWSDTEEIND 1050 (1109)
Q Consensus 975 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 1050 (1109)
.. ......+||+.|+|||++.+..++.++||||+||++|||++|+.||....... .................
T Consensus 163 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 238 (345)
T 3a8x_A 163 PG--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRI-- 238 (345)
T ss_dssp TT--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCC--
T ss_pred CC--CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCC--
Confidence 22 12234689999999999999999999999999999999999999996421110 00111111111100000
Q ss_pred ccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCH------HHHHHHhh
Q 001275 1051 IVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNM------RDVVRQLV 1098 (1109)
Q Consensus 1051 ~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~------~evl~~L~ 1098 (1109)
+ .....++.+++.+|++.||++||++ +|+++|-.
T Consensus 239 -----------p---~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~ 278 (345)
T 3a8x_A 239 -----------P---RSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPF 278 (345)
T ss_dssp -----------C---TTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGG
T ss_pred -----------C---CCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCc
Confidence 0 0112345667889999999999995 78887754
No 135
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=6.6e-37 Score=344.35 Aligned_cols=274 Identities=24% Similarity=0.295 Sum_probs=202.5
Q ss_pred HhhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeeccc----ccChHHHHHHHHHHhcCC---CCceeeEeeEEecC
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGH----KRGSLSMKREIQTIGKIR---HRNLVRLEDFWLRK 888 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~----~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~ 888 (1109)
..++|++.++||+|+||+||+|.. .+++.||||++..... ......+.+|++++++++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 357899999999999999999976 5689999999864432 222456778888887774 99999999999875
Q ss_pred C-----ceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEE
Q 001275 889 D-----CGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHI 963 (1109)
Q Consensus 889 ~-----~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl 963 (1109)
. ..++||||++ |+|.+++.... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl 161 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAP-PPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKL 161 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCC-TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSCEEE
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEE
Confidence 5 4799999997 59999998644 334899999999999999999999 889999999999999999999999
Q ss_pred ecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhc
Q 001275 964 SDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWS 1043 (1109)
Q Consensus 964 ~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~ 1043 (1109)
+|||+++....... .....||+.|+|||++.+..++.++||||+||++|||++|+.||...... ............
T Consensus 162 ~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~~~~~i~~~~~~ 237 (308)
T 3g33_A 162 ADFGLARIYSYQMA---LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEA-DQLGKIFDLIGL 237 (308)
T ss_dssp CSCSCTTTSTTCCC---SGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHH-HHHHHHHHHHCC
T ss_pred eeCccccccCCCcc---cCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCC
Confidence 99999987643322 23467899999999999999999999999999999999999999654221 112222211110
Q ss_pred Cc-cccccccc--hhhhH----HhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1044 DT-EEINDIVD--LSLME----EMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1044 ~~-~~~~~~~d--~~~~~----~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
.. ........ ..... ........+...++.+++.+|++.||++|||++|+++|-+-
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h~~~ 300 (308)
T 3g33_A 238 PPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYL 300 (308)
T ss_dssp CCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTC
T ss_pred CChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcCccc
Confidence 00 00000000 00000 00000011223456778889999999999999999987543
No 136
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=2.9e-37 Score=343.85 Aligned_cols=255 Identities=20% Similarity=0.299 Sum_probs=200.0
Q ss_pred hCCCCCceeecccCeEEEEEEeCC-C-------cEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCc
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGP-N-------AVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDC 890 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~-~-------~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 890 (1109)
++|...+.||+|+||+||+|.... + ..||+|++.. ........+.+|++++++++||||+++++++...+.
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDK-AHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECG-GGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccc-ccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 578889999999999999996543 3 4699998843 334455779999999999999999999999999999
Q ss_pred eeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCc--------EE
Q 001275 891 GIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEME--------PH 962 (1109)
Q Consensus 891 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~--------~k 962 (1109)
.++||||+++|+|.+++.... ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++. +|
T Consensus 87 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~k 161 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKKNK--NCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPFIK 161 (289)
T ss_dssp CEEEEECCTTCBHHHHHHHTG--GGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCCEEE
T ss_pred CEEEEECCCCCCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCcccccccceee
Confidence 999999999999999998643 23889999999999999999999 889999999999999998887 99
Q ss_pred EecccCCcccCCCCCCceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHh
Q 001275 963 ISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSV 1041 (1109)
Q Consensus 963 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~ 1041 (1109)
|+|||++...... ....||+.|+|||++.+ ..++.++||||+|+++|||++|+.|+........ ......
T Consensus 162 l~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~-~~~~~~-- 232 (289)
T 4fvq_A 162 LSDPGISITVLPK------DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQR-KLQFYE-- 232 (289)
T ss_dssp ECCCCSCTTTSCH------HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH-HHHHHH--
T ss_pred eccCcccccccCc------cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHH-HHHHhh--
Confidence 9999998754321 22468899999999987 7789999999999999999997665543322111 111110
Q ss_pred hcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCCCCCC
Q 001275 1042 WSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASVPMTS 1106 (1109)
Q Consensus 1042 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~ 1106 (1109)
........ ...++.+++.+||+.||++||+++|++++|+++..+..+
T Consensus 233 --~~~~~~~~----------------~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~~ 279 (289)
T 4fvq_A 233 --DRHQLPAP----------------KAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDLV 279 (289)
T ss_dssp --TTCCCCCC----------------SSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-----
T ss_pred --ccCCCCCC----------------CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCC
Confidence 11001000 012355688899999999999999999999998665443
No 137
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=3.7e-37 Score=339.41 Aligned_cols=252 Identities=21% Similarity=0.278 Sum_probs=201.3
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEecC--CceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK--DCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ 895 (1109)
++|...+.||+|+||+||+|+.+ ++.||||++.... .....+.+.+|+.++++++||||+++++++... +..++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT 88 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence 57888999999999999999986 8899999986543 233356789999999999999999999999887 6789999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPP--IVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
||+++|+|.++++... ...+++..++.++.|+++||+||| +.+ |+||||||+||+++.++.++++|||++....
T Consensus 89 e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~ 164 (271)
T 3kmu_A 89 HWMPYGSLYNVLHEGT-NFVVDQSQAVKFALDMARGMAFLH---TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ 164 (271)
T ss_dssp ECCTTCBHHHHHHSCS-SCCCCHHHHHHHHHHHHHHHHHHT---TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS
T ss_pred cccCCCcHHHHHhhcc-cCCCCHHHHHHHHHHHHHHHHHHh---cCCCceecCCCccceEEEcCCcceeEEeccceeeec
Confidence 9999999999998643 335899999999999999999999 778 9999999999999999999999999876432
Q ss_pred CCCCCceeeecccCcccccccccccCCCCc---cCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFTTAKSK---ESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEIND 1050 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1109)
.. ...||+.|+|||.+.+..++. ++||||+|+++|||++|+.||....... ............ .
T Consensus 165 ~~-------~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-----~~~~~~~~~~~~-~ 231 (271)
T 3kmu_A 165 SP-------GRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNME-----IGMKVALEGLRP-T 231 (271)
T ss_dssp CT-------TCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHH-----HHHHHHHSCCCC-C
T ss_pred cc-------CccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHH-----HHHHHHhcCCCC-C
Confidence 22 246899999999988765544 7999999999999999999996432211 111111000000 0
Q ss_pred ccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCC
Q 001275 1051 IVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDAS 1101 (1109)
Q Consensus 1051 ~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 1101 (1109)
. . .....++.+++.+||+.||++||+++|+++.|+++.
T Consensus 232 ~-~------------~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~ 269 (271)
T 3kmu_A 232 I-P------------PGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQ 269 (271)
T ss_dssp C-C------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred C-C------------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 0 0 111234667888999999999999999999998763
No 138
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=2.6e-37 Score=358.97 Aligned_cols=260 Identities=22% Similarity=0.283 Sum_probs=205.2
Q ss_pred HHhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCcee
Q 001275 816 EATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGI 892 (1109)
Q Consensus 816 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 892 (1109)
...++|...++||+|+||+||+|+.. +++.||+|++.... .......+.+|+.+++.++|||||++++++.+.+..|
T Consensus 66 ~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~ 145 (410)
T 3v8s_A 66 MKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLY 145 (410)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEE
Confidence 34578999999999999999999775 58899999985422 2233456889999999999999999999999999999
Q ss_pred EEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCccc
Q 001275 893 IMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLL 972 (1109)
Q Consensus 893 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~ 972 (1109)
+||||+++|+|.++++.. .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+..
T Consensus 146 lV~E~~~gg~L~~~l~~~----~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~ 218 (410)
T 3v8s_A 146 MVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKM 218 (410)
T ss_dssp EEECCCTTEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEeCCCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEeccceeEee
Confidence 999999999999999763 3889999999999999999999 899999999999999999999999999999876
Q ss_pred CCCCCCceeeecccCcccccccccccCC----CCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccc
Q 001275 973 DKSPASTTSISVVGTIGYIAPENAFTTA----KSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEI 1048 (1109)
Q Consensus 973 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1109)
.... .......+||+.|+|||++.+.. ++.++||||+||++|||++|+.||..... ..............
T Consensus 219 ~~~~-~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~-----~~~~~~i~~~~~~~ 292 (410)
T 3v8s_A 219 NKEG-MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL-----VGTYSKIMNHKNSL 292 (410)
T ss_dssp CTTS-EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHHTHHHHC
T ss_pred ccCC-cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCCh-----hhHHHHHHhccccc
Confidence 5432 12223468999999999988765 78999999999999999999999965321 11111111100000
Q ss_pred ccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCC--CCCHHHHHHHhhhC
Q 001275 1049 NDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSN--RPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1049 ~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--RPs~~evl~~L~~~ 1100 (1109)
.. +.......++.+++.+|++.+|++ ||+++|+++|-+-.
T Consensus 293 -~~-----------p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp~f~ 334 (410)
T 3v8s_A 293 -TF-----------PDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFK 334 (410)
T ss_dssp -CC-----------CTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTSGGGC
T ss_pred -cC-----------CCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcCcccc
Confidence 00 000011234556777999999998 99999999987643
No 139
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=9.8e-37 Score=345.61 Aligned_cols=251 Identities=20% Similarity=0.295 Sum_probs=193.7
Q ss_pred hCCCCCceeecccCeEEEEEEe----CCCcEEEEEEeeecc---cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCce
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL----GPNAVFAVKKLAFRG---HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCG 891 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~----~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 891 (1109)
++|+..+.||+|+||+||+|+. .+++.||+|++.... .......+.+|++++++++||||+++++++...+..
T Consensus 17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 96 (327)
T 3a62_A 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL 96 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence 6788999999999999999977 478999999985432 123345678999999999999999999999999999
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKL 971 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~ 971 (1109)
++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 97 ~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~ 170 (327)
T 3a62_A 97 YLILEYLSGGELFMQLEREG---IFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKE 170 (327)
T ss_dssp EEEEECCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCSCC--
T ss_pred EEEEeCCCCCcHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCCcccc
Confidence 99999999999999997643 3889999999999999999999 88999999999999999999999999999985
Q ss_pred cCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccc
Q 001275 972 LDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDI 1051 (1109)
Q Consensus 972 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1109)
..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... ..............
T Consensus 171 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-----~~~~~i~~~~~~~p-- 241 (327)
T 3a62_A 171 SIHDG--TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRK-----KTIDKILKCKLNLP-- 241 (327)
T ss_dssp ----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-----HHHHHHHHTCCCCC--
T ss_pred cccCC--ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHH-----HHHHHHHhCCCCCC--
Confidence 43221 1223457999999999999999999999999999999999999999653211 11111111100000
Q ss_pred cchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHHhh
Q 001275 1052 VDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRP-----NMRDVVRQLV 1098 (1109)
Q Consensus 1052 ~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~evl~~L~ 1098 (1109)
. ....++.+++.+|++.||++|| +++|+++|-.
T Consensus 242 -----------~---~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp~ 279 (327)
T 3a62_A 242 -----------P---YLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPF 279 (327)
T ss_dssp -----------T---TSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHSGG
T ss_pred -----------C---CCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcCCc
Confidence 0 1123456678899999999999 8889998754
No 140
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=350.41 Aligned_cols=271 Identities=20% Similarity=0.311 Sum_probs=197.1
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
++|...+.||+|+||+||+|... +++.||+|++...........+.+|++++++++||||+++++++...+..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 46888999999999999999775 78999999986544333333556899999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
++ |+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~- 154 (324)
T 3mtl_A 82 LD-KDLKQYLDDCG--NIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPT- 154 (324)
T ss_dssp CS-EEHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC-----
T ss_pred cc-cCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCc-
Confidence 98 59999987643 35899999999999999999999 8899999999999999999999999999998654322
Q ss_pred CceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcC--ccccccccch
Q 001275 978 STTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSD--TEEINDIVDL 1054 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~ 1054 (1109)
.......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... +....+...... ..........
T Consensus 155 -~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~ 231 (324)
T 3mtl_A 155 -KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVE--EQLHFIFRILGTPTEETWPGILSN 231 (324)
T ss_dssp ---------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHHHCCCCTTTSTTGGGC
T ss_pred -cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHHhCCCChHhchhhhcc
Confidence 22234578999999998876 56799999999999999999999999654221 122222111111 0001111110
Q ss_pred hhhHHh---------hhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1055 SLMEEM---------LVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1055 ~~~~~~---------~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
...... ..........++.+++.+|++.||++|||++|+++|-+-
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f 285 (324)
T 3mtl_A 232 EEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFF 285 (324)
T ss_dssp HHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGG
T ss_pred hhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhh
Confidence 000000 000011122456778889999999999999999997543
No 141
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2.1e-37 Score=340.67 Aligned_cols=254 Identities=22% Similarity=0.343 Sum_probs=206.2
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEec
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRYM 898 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 898 (1109)
++|+..+.||+|+||.||+|...+++.||+|++... ......+.+|++++++++||||+++++++...+..++||||+
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG--AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFM 85 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT--TBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCC
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEcccc--CCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCC
Confidence 568888999999999999999988999999998543 234567999999999999999999999999999999999999
Q ss_pred cCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCCC
Q 001275 899 ENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPAS 978 (1109)
Q Consensus 899 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~ 978 (1109)
++|+|.+++.... ..+++..+..++.|+++|++||| +.+|+||||||+||+++.++.+||+|||+++...... .
T Consensus 86 ~~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~-~ 159 (267)
T 3t9t_A 86 EHGCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-Y 159 (267)
T ss_dssp TTCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH-H
T ss_pred CCCcHHHHHhhCc--ccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEccccccccccccc-c
Confidence 9999999997643 35889999999999999999999 8899999999999999999999999999998664321 1
Q ss_pred ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchhhh
Q 001275 979 TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLM 1057 (1109)
Q Consensus 979 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 1057 (1109)
.......+|..|+|||++.+..++.++||||+|+++|||++ |+.||..... ............ ...+
T Consensus 160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~i~~~~~----~~~~--- 227 (267)
T 3t9t_A 160 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN-----SEVVEDISTGFR----LYKP--- 227 (267)
T ss_dssp HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHHHTTCC----CCCC---
T ss_pred cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCH-----HHHHHHHhcCCc----CCCC---
Confidence 11223467789999999998999999999999999999999 8988864321 111111111100 0000
Q ss_pred HHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1058 EEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1058 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.....++.+++.+||+.||++||+++|++++|+++
T Consensus 228 --------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l 262 (267)
T 3t9t_A 228 --------RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEI 262 (267)
T ss_dssp --------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred --------ccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 01123466788899999999999999999999876
No 142
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=1.3e-36 Score=359.32 Aligned_cols=249 Identities=22% Similarity=0.307 Sum_probs=203.4
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|.+.+.||+|+||.||+|+.. +|+.||||++.... .......+.+|+++++.++||||+++++++...+..++||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 56888999999999999999775 78999999985432 2233567899999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 96 E~~~gg~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~ 169 (476)
T 2y94_A 96 EYVSGGELFDYICKNG---RLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 169 (476)
T ss_dssp ECCSSEEHHHHTTSSS---SCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTT
T ss_pred eCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhcccc
Confidence 9999999999997543 4899999999999999999999 899999999999999999999999999999876543
Q ss_pred CCCceeeecccCcccccccccccCCC-CccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAK-SKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
.. .....||+.|+|||++.+..+ +.++||||+||++|||++|+.||..... ................
T Consensus 170 ~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~-----~~~~~~i~~~~~~~p~---- 237 (476)
T 2y94_A 170 EF---LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV-----PTLFKKICDGIFYTPQ---- 237 (476)
T ss_dssp CC---BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS-----HHHHHHHHTTCCCCCT----
T ss_pred cc---ccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH-----HHHHHHHhcCCcCCCc----
Confidence 22 223579999999999988776 7899999999999999999999965321 1111111111100000
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
....++.+++.+|++.||++|||++|+++|-
T Consensus 238 ------------~~s~~~~~Li~~~L~~dP~~Rpt~~eil~hp 268 (476)
T 2y94_A 238 ------------YLNPSVISLLKHMLQVDPMKRATIKDIREHE 268 (476)
T ss_dssp ------------TCCHHHHHHHHHHTCSSTTTSCCHHHHHTCH
T ss_pred ------------cCCHHHHHHHHHHcCCCchhCcCHHHHHhCH
Confidence 0113456688899999999999999999864
No 143
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=1.3e-36 Score=346.89 Aligned_cols=252 Identities=22% Similarity=0.282 Sum_probs=203.5
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCceeE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 893 (1109)
.++|+..++||+|+||+||+|+.. +++.||+|++.... .......+.+|.+++..+ +||+|+++++++...+..|+
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 98 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 98 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence 467999999999999999999876 47899999986542 233456788999999988 89999999999999999999
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
||||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 99 v~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 172 (353)
T 2i0e_A 99 VMEYVNGGDLMYHIQQVG---RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI 172 (353)
T ss_dssp EEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCcccccc
Confidence 999999999999998644 3899999999999999999999 8899999999999999999999999999998643
Q ss_pred CCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVD 1053 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1053 (1109)
... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ...............
T Consensus 173 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-----~~~~~~i~~~~~~~p---- 241 (353)
T 2i0e_A 173 WDG--VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE-----DELFQSIMEHNVAYP---- 241 (353)
T ss_dssp CTT--CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHCCCCCC----
T ss_pred cCC--cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH-----HHHHHHHHhCCCCCC----
Confidence 222 123346899999999999999999999999999999999999999965321 111111111110000
Q ss_pred hhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHHHhh
Q 001275 1054 LSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPN-----MRDVVRQLV 1098 (1109)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-----~~evl~~L~ 1098 (1109)
. ....++.+++.+|++.||++||+ ++|+++|-.
T Consensus 242 ---------~---~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h~~ 279 (353)
T 2i0e_A 242 ---------K---SMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAF 279 (353)
T ss_dssp ---------T---TSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTSGG
T ss_pred ---------C---CCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCcc
Confidence 0 11234566788999999999994 688887753
No 144
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=3e-37 Score=348.70 Aligned_cols=268 Identities=22% Similarity=0.321 Sum_probs=203.7
Q ss_pred CCCCceeecccCeEEEEEEe-----CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecC--CceeE
Q 001275 821 LNAKHVIGRGAHGIVYKASL-----GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK--DCGII 893 (1109)
Q Consensus 821 ~~~~~~lG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~l 893 (1109)
|+..++||+|+||+||++.+ .+++.||||++...........+.+|++++++++||||+++++++... ...++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 48889999999999998864 268899999996554445566799999999999999999999999874 56799
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
||||+++|+|.+++.... +++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 113 v~e~~~~~~L~~~l~~~~----~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~ 185 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPRHS----IGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVP 185 (318)
T ss_dssp EECCCTTCBHHHHGGGSC----CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECC
T ss_pred EEecccCCcHHHHHhhCC----CCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCcccccccc
Confidence 999999999999997643 899999999999999999999 8899999999999999999999999999998775
Q ss_pred CCCCC-ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 974 KSPAS-TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 974 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
..... .......+|..|+|||.+.+..++.++||||+|+++|||++|+.||............+...... .....+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 264 (318)
T 3lxp_A 186 EGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMT-VLRLTELL 264 (318)
T ss_dssp TTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHH-HHHHHHHH
T ss_pred ccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchh-HHHHHHHH
Confidence 44322 12234568889999999999899999999999999999999999985432110000000000000 00000000
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
. .............++.+++.+||+.||++||+++|+++.|+.+
T Consensus 265 ~----~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l 308 (318)
T 3lxp_A 265 E----RGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTV 308 (318)
T ss_dssp H----TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred h----cccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence 0 0000001112234577788899999999999999999999875
No 145
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=5e-37 Score=345.64 Aligned_cols=248 Identities=21% Similarity=0.275 Sum_probs=192.4
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc-ccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|+..++||+|+||+||+|... +++.||||++..... ......+.+|+..+.++ +||||++++++|.+.+..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 57999999999999999999876 789999998744322 22233455566665555 8999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+ +++|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 137 e~~-~~~L~~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~ 210 (311)
T 3p1a_A 137 ELC-GPSLQQHCEAWG--ASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTA 210 (311)
T ss_dssp ECC-CCBHHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGGGCEEECCCTTCEECC--
T ss_pred ecc-CCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEccceeeeecccC
Confidence 999 679999887653 35899999999999999999999 889999999999999999999999999999876443
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
. ......||++|+|||++.+ .++.++|||||||++|||++|..++.... . + ..... ....+.
T Consensus 211 ~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~----~---~-~~~~~------~~~~~~ 272 (311)
T 3p1a_A 211 G---AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGE----G---W-QQLRQ------GYLPPE 272 (311)
T ss_dssp -------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHH----H---H-HHHTT------TCCCHH
T ss_pred C---CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCcc----H---H-HHHhc------cCCCcc
Confidence 2 2233569999999998875 78999999999999999999987764321 0 0 00000 000111
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
. ......++.+++.+|++.||++||+++|++++-+
T Consensus 273 ~--------~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~ 307 (311)
T 3p1a_A 273 F--------TAGLSSELRSVLVMMLEPDPKLRATAEALLALPV 307 (311)
T ss_dssp H--------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGG
T ss_pred c--------ccCCCHHHHHHHHHHcCCChhhCcCHHHHHhCcc
Confidence 0 0112345677888999999999999999998643
No 146
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=1.1e-36 Score=338.46 Aligned_cols=254 Identities=23% Similarity=0.290 Sum_probs=198.7
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
++|...++||+|+||+||+|.. .+++.||+|++...........+.+|++++++++||||+++++++...+..++||||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 101 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET 101 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence 5788999999999999999976 468899999997666566678899999999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee---CCCCcEEEecccCCcccC
Q 001275 898 MENGSLRDVLHSIT-PPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL---DSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll---~~~~~~kl~DfGla~~~~ 973 (1109)
+++|+|.+++.... ....+++..+..++.|+++||+||| +.+|+||||||+||++ +.++.+||+|||+++...
T Consensus 102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~ 178 (285)
T 3is5_A 102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK 178 (285)
T ss_dssp CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC--
T ss_pred CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecC
Confidence 99999999886531 2245899999999999999999999 8899999999999999 456789999999998664
Q ss_pred CCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVD 1053 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1053 (1109)
... ......||+.|+|||.+. ..++.++||||+|+++|||++|+.||...... ........ ........
T Consensus 179 ~~~---~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~--~~~~~~~~---~~~~~~~~-- 247 (285)
T 3is5_A 179 SDE---HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLE--EVQQKATY---KEPNYAVE-- 247 (285)
T ss_dssp -----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHH---CCCCCCC---
T ss_pred Ccc---cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHH--HHHhhhcc---CCcccccc--
Confidence 332 223457999999999875 57899999999999999999999999653211 11111110 00000000
Q ss_pred hhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1054 LSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
......++.+++.+|++.||++||+++|++++-
T Consensus 248 -----------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp 280 (285)
T 3is5_A 248 -----------CRPLTPQAVDLLKQMLTKDPERRPSAAQVLHHE 280 (285)
T ss_dssp ------------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTSG
T ss_pred -----------cCcCCHHHHHHHHHHccCChhhCcCHHHHhcCH
Confidence 000123456788899999999999999999864
No 147
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=8.6e-37 Score=354.32 Aligned_cols=254 Identities=21% Similarity=0.308 Sum_probs=196.8
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCC--CCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIR--HRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|.+.+.||+|+||+||+|...+++.||||++..... ......+.+|++++++++ ||||+++++++...+..++||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 45888999999999999999988899999999865432 334567899999999996 599999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
| +.+++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++ ++.+||+|||+++.....
T Consensus 136 E-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~ 207 (390)
T 2zmd_A 136 E-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 207 (390)
T ss_dssp E-CCSEEHHHHHHHCS---SCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---
T ss_pred e-cCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCC
Confidence 9 56889999998744 4889999999999999999999 89999999999999995 589999999999877544
Q ss_pred CCCceeeecccCccccccccccc-----------CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcC
Q 001275 976 PASTTSISVVGTIGYIAPENAFT-----------TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSD 1044 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1044 (1109)
..........||+.|+|||++.+ ..++.++|||||||++|||++|+.||....... ..+......
T Consensus 208 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~----~~~~~~~~~ 283 (390)
T 2zmd_A 208 TTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI----SKLHAIIDP 283 (390)
T ss_dssp ------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH----HHHHHHHCT
T ss_pred CccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHH----HHHHHHhCc
Confidence 33223344679999999998865 468999999999999999999999996432211 111111111
Q ss_pred ccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1045 TEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1045 ~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.... .. .... ..++.+++.+||+.||++||++.|+++|-+
T Consensus 284 ~~~~-~~----------~~~~---~~~~~~li~~~L~~dP~~Rps~~ell~hp~ 323 (390)
T 2zmd_A 284 NHEI-EF----------PDIP---EKDLQDVLKCCLKRDPKQRISIPELLAHPY 323 (390)
T ss_dssp TSCC-CC----------CCCS---CHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred cccC-CC----------Cccc---hHHHHHHHHHHcccChhhCCCHHHHhhCcC
Confidence 1000 00 0001 234667888999999999999999998754
No 148
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.8e-37 Score=357.30 Aligned_cols=256 Identities=24% Similarity=0.343 Sum_probs=190.5
Q ss_pred CCCCCceeecccCeEEEEEEeC--CC--cEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEec-CCceeEE
Q 001275 820 NLNAKHVIGRGAHGIVYKASLG--PN--AVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLR-KDCGIIM 894 (1109)
Q Consensus 820 ~~~~~~~lG~G~~g~Vy~~~~~--~~--~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~lv 894 (1109)
.|...++||+|+||+||+|... ++ ..||||.+..........++.+|+.++++++||||+++++++.. .+..++|
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv 169 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV 169 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence 3556688999999999999753 22 46899988654444556789999999999999999999998765 4578999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
|||+++|+|.++++... ..+++..++.++.|+++||+||| +.+|+||||||+||++++++.+||+|||+++....
T Consensus 170 ~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~ 244 (373)
T 3c1x_A 170 LPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 244 (373)
T ss_dssp EECCTTCBHHHHHHCTT--CCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred EECCCCCCHHHHHhhcc--cCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeeccccccccc
Confidence 99999999999997643 34789999999999999999999 88999999999999999999999999999986643
Q ss_pred CCCC--ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccc
Q 001275 975 SPAS--TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDI 1051 (1109)
Q Consensus 975 ~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1109)
.... .......+|+.|+|||++.+..++.++|||||||++|||++ |..||.... ..+....+.. ... .
T Consensus 245 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~--~~~~~~~~~~---~~~----~ 315 (373)
T 3c1x_A 245 KEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN--TFDITVYLLQ---GRR----L 315 (373)
T ss_dssp -------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC--SSCHHHHHHT---TCC----C
T ss_pred cccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCC--HHHHHHHHHc---CCC----C
Confidence 3221 12234567889999999999999999999999999999999 555654321 1122221111 000 0
Q ss_pred cchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1052 VDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1052 ~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
..+ ......+.+++.+||+.||++||+++|++++|+++
T Consensus 316 ~~p-----------~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i 353 (373)
T 3c1x_A 316 LQP-----------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 353 (373)
T ss_dssp CCC-----------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCC-----------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 000 01123466788899999999999999999999876
No 149
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=4e-37 Score=354.62 Aligned_cols=267 Identities=16% Similarity=0.214 Sum_probs=199.6
Q ss_pred hhCCCCCceeecccCeEEEEEEeCC------CcEEEEEEeeecccc----------cChHHHHHHHHHHhcCCCCceeeE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLGP------NAVFAVKKLAFRGHK----------RGSLSMKREIQTIGKIRHRNLVRL 881 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~----------~~~~~~~~E~~~l~~l~h~niv~l 881 (1109)
.++|.+.+.||+|+||+||+|.+.. ++.||||++...... .....+..|+..+..++||||+++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 3578899999999999999997754 478999998543211 111234456677788899999999
Q ss_pred eeEEecC----CceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeC-
Q 001275 882 EDFWLRK----DCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLD- 956 (1109)
Q Consensus 882 ~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~- 956 (1109)
++++... ...++||||+ +|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~Nill~~ 187 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANA--KRFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASNLLLNY 187 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEES
T ss_pred EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHHEEEec
Confidence 9998765 4479999999 999999998642 35899999999999999999999 88999999999999998
Q ss_pred -CCCcEEEecccCCcccCCCCCC-----ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccc
Q 001275 957 -SEMEPHISDFGIAKLLDKSPAS-----TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKE 1030 (1109)
Q Consensus 957 -~~~~~kl~DfGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~ 1030 (1109)
.++.+||+|||+++.+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||......
T Consensus 188 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~ 267 (364)
T 3op5_A 188 KNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD 267 (364)
T ss_dssp SCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC
T ss_pred CCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC
Confidence 8899999999999876432211 1112346999999999999999999999999999999999999999643222
Q ss_pred cccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1031 RTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
........... ......+.++.+. . .....++.+++..||+.||++||+++++++.|+++
T Consensus 268 -~~~~~~~~~~~--~~~~~~~~~~~~~----~---~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~ 327 (364)
T 3op5_A 268 -PKYVRDSKIRY--RENIASLMDKCFP----A---ANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQG 327 (364)
T ss_dssp -HHHHHHHHHHH--HHCHHHHHHHHSC----T---TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHh--hhhHHHHHHHhcc----c---ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 11111111111 0011111111100 0 11234567788899999999999999999998764
No 150
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=9.6e-37 Score=354.89 Aligned_cols=206 Identities=18% Similarity=0.228 Sum_probs=176.4
Q ss_pred hhCCCCCceeecc--cCeEEEEEEeC-CCcEEEEEEeeecccc-cChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeE
Q 001275 818 TENLNAKHVIGRG--AHGIVYKASLG-PNAVFAVKKLAFRGHK-RGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 818 ~~~~~~~~~lG~G--~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 893 (1109)
..+|++.++||+| +||+||+|+.. +++.||||++...... .....+.+|++++++++|||||++++++...+..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 3678899999999 99999999875 6899999999654322 334568889999999999999999999999999999
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
||||+++|+|.+++.... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.+....
T Consensus 104 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~ 179 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHF-MDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMI 179 (389)
T ss_dssp EEECCTTCBHHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred EEEccCCCCHHHHHhhhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence 999999999999997643 234899999999999999999999 8899999999999999999999999999986543
Q ss_pred CCCC-----CceeeecccCccccccccccc--CCCCccCcchhhHHHHHHHHhCCCCCCCC
Q 001275 974 KSPA-----STTSISVVGTIGYIAPENAFT--TAKSKESDVYSYGVVLLELITRKKALDPS 1027 (1109)
Q Consensus 974 ~~~~-----~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDvwSlGvil~elltg~~p~~~~ 1027 (1109)
.... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||...
T Consensus 180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 240 (389)
T 3gni_B 180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM 240 (389)
T ss_dssp ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCC
Confidence 2211 111122478999999999987 67899999999999999999999999653
No 151
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=2.2e-37 Score=348.72 Aligned_cols=256 Identities=26% Similarity=0.339 Sum_probs=192.4
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccc--cChHHHHHHHHHHhcCCCCceeeEeeEEecCCce----
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHK--RGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCG---- 891 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 891 (1109)
++|++.+.||+|+||+||+|.. .+++.||||++...... .....+.+|++++++++||||+++++++...+..
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 91 (311)
T 3ork_A 12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP 91 (311)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCccc
Confidence 5788999999999999999976 57899999998543222 2235788999999999999999999998776544
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKL 971 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~ 971 (1109)
++||||+++|+|.++++... .+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 92 ~lv~e~~~g~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~ 165 (311)
T 3ork_A 92 YIVMEYVDGVTLRDIVHTEG---PMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARA 165 (311)
T ss_dssp EEEEECCCEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSCC--
T ss_pred EEEEecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccCccc
Confidence 99999999999999998644 4899999999999999999999 88999999999999999999999999999987
Q ss_pred cCCCCCC-ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccc
Q 001275 972 LDKSPAS-TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEIND 1050 (1109)
Q Consensus 972 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1109)
....... .......||+.|+|||++.+..++.++||||+||++|||++|+.||....... .........
T Consensus 166 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~-----~~~~~~~~~----- 235 (311)
T 3ork_A 166 IADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVS-----VAYQHVRED----- 235 (311)
T ss_dssp ----------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH-----HHHHHHHCC-----
T ss_pred ccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH-----HHHHHhcCC-----
Confidence 6543222 22234579999999999999999999999999999999999999996532211 111111000
Q ss_pred ccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1051 IVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1051 ~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
...+. ... .....++.+++.+||+.||++||++.+++++-
T Consensus 236 ~~~~~----~~~---~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~ 275 (311)
T 3ork_A 236 PIPPS----ARH---EGLSADLDAVVLKALAKNPENRYQTAAEMRAD 275 (311)
T ss_dssp CCCHH----HHS---TTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHH
T ss_pred CCCcc----ccc---CCCCHHHHHHHHHHHhcCHhhChhhHHHHHHH
Confidence 00000 000 11224466788899999999999776666543
No 152
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=7.3e-37 Score=355.67 Aligned_cols=273 Identities=23% Similarity=0.324 Sum_probs=193.0
Q ss_pred HhhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc-cccChHHHHHHHHHHhcCC-CCceeeEeeEEecCC--ce
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIR-HRNLVRLEDFWLRKD--CG 891 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~--~~ 891 (1109)
..++|...+.||+|+||+||+|.. .+++.||||++.... .......+.+|+.+++++. ||||+++++++...+ ..
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~ 86 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV 86 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence 457899999999999999999976 568999999985332 2334556789999999997 999999999997544 67
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKL 971 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~ 971 (1109)
|+||||++ |+|.++++.. .+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+|+.
T Consensus 87 ~lv~e~~~-~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 158 (388)
T 3oz6_A 87 YLVFDYME-TDLHAVIRAN----ILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRS 158 (388)
T ss_dssp EEEEECCS-EEHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEecccC-cCHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCccccc
Confidence 99999998 5999998763 3889999999999999999999 89999999999999999999999999999986
Q ss_pred cCCCCC-------------------CceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCcccc
Q 001275 972 LDKSPA-------------------STTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKER 1031 (1109)
Q Consensus 972 ~~~~~~-------------------~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~ 1031 (1109)
...... .......+||+.|+|||++.+ ..++.++||||+||++|||++|+.||.... ..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~-~~ 237 (388)
T 3oz6_A 159 FVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSS-TM 237 (388)
T ss_dssp SSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS-HH
T ss_pred ccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCC-HH
Confidence 643111 112234689999999999886 678999999999999999999999996532 11
Q ss_pred ccHHHHHHHhhcCc-cccccccch---hhh------------------HHhh-----hchhHHHHHHHHHHHHhccCCCC
Q 001275 1032 TDIVGWVRSVWSDT-EEINDIVDL---SLM------------------EEML-----VSSIRDQVIDVLLVALRCTEKKP 1084 (1109)
Q Consensus 1032 ~~~~~~~~~~~~~~-~~~~~~~d~---~~~------------------~~~~-----~~~~~~~~~~l~~l~~~cl~~dP 1084 (1109)
..+........... .....+..+ ... .... .........++.+++.+|++.||
T Consensus 238 ~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP 317 (388)
T 3oz6_A 238 NQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNP 317 (388)
T ss_dssp HHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSG
T ss_pred HHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCc
Confidence 11222211111000 000000000 000 0000 00000123457778889999999
Q ss_pred CCCCCHHHHHHHhh
Q 001275 1085 SNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1085 ~~RPs~~evl~~L~ 1098 (1109)
++|||++|+++|-.
T Consensus 318 ~~R~t~~e~l~Hp~ 331 (388)
T 3oz6_A 318 NKRISANDALKHPF 331 (388)
T ss_dssp GGSCCHHHHTTSTT
T ss_pred ccCCCHHHHhCCHH
Confidence 99999999999843
No 153
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=4.7e-37 Score=343.83 Aligned_cols=264 Identities=24% Similarity=0.335 Sum_probs=201.9
Q ss_pred hCCCCCceeecccCeEEEEEEeCC----CcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEec-CCceeE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGP----NAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLR-KDCGII 893 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~l 893 (1109)
.+|...++||+|+||+||+|...+ ...||+|.+...........+.+|+.++++++||||+++++++.. ++..++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 104 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 104 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence 457788999999999999997642 235889988554444556778999999999999999999998654 557899
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
||||+++|+|.++++... ..+++..++.++.|+++||+||| +.+|+||||||+||++++++.+||+|||+++...
T Consensus 105 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~ 179 (298)
T 3f66_A 105 VLPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 179 (298)
T ss_dssp EEECCTTCBHHHHHHCTT--CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCS
T ss_pred EEeCCCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECccccccccc
Confidence 999999999999997633 35789999999999999999999 8899999999999999999999999999998664
Q ss_pred CCCC--CceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccc
Q 001275 974 KSPA--STTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDI 1051 (1109)
Q Consensus 974 ~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1109)
.... ........+|+.|+|||.+.+..++.++||||+|+++|||++|+.|+....... +....... ....
T Consensus 180 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~-~~~~~~~~---~~~~---- 251 (298)
T 3f66_A 180 DKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQ---GRRL---- 251 (298)
T ss_dssp CGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTT-THHHHHHT---TCCC----
T ss_pred ccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHH-HHHHHHhc---CCCC----
Confidence 4321 122334567889999999999999999999999999999999555543322221 11111111 1000
Q ss_pred cchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCCCCCC
Q 001275 1052 VDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASVPMTS 1106 (1109)
Q Consensus 1052 ~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~ 1106 (1109)
..+ .....++.+++.+||+.||++||+++|+++.|+++.....+
T Consensus 252 ~~~-----------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~ 295 (298)
T 3f66_A 252 LQP-----------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 295 (298)
T ss_dssp CCC-----------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCC
T ss_pred CCC-----------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhcc
Confidence 000 01123466788899999999999999999999987544433
No 154
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=362.20 Aligned_cols=318 Identities=19% Similarity=0.186 Sum_probs=251.8
Q ss_pred ecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccc
Q 001275 101 DLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLS 180 (1109)
Q Consensus 101 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 180 (1109)
+.++++++ .+|..+. +++++|+|++|++++..|..|.++++|++|+|++|.+++..|..+.++++|++|+|++|+++
T Consensus 17 ~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 17 LCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp ECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 33445555 5676553 68999999999999888899999999999999999999888889999999999999999998
Q ss_pred cccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCccccccc
Q 001275 181 GSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSE 260 (1109)
Q Consensus 181 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 260 (1109)
+..+..|+++++|++|+|++|++++..|..|.++++|++|+|++|.+++..+..|.++++|+.|++++|++++..+..+.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 173 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc
Confidence 76667788899999999999999888888888999999999999998888888888888888888888888877777777
Q ss_pred CCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCcccccccccee
Q 001275 261 KCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVL 340 (1109)
Q Consensus 261 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 340 (1109)
.+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+.+|.......+|+.|++++|++++..+..+..+++|+.|
T Consensus 174 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253 (477)
T ss_dssp TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEE
T ss_pred ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCee
Confidence 88888888888888877766777778888888888877776666665555677777777777775444567777777777
Q ss_pred eccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCc
Q 001275 341 HLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFS 420 (1109)
Q Consensus 341 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 420 (1109)
+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|++++..+..|..+++|+.|++++|+++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 77777777666666777777777777777777666666777777777777777777655566666677777777777665
Q ss_pred c
Q 001275 421 G 421 (1109)
Q Consensus 421 ~ 421 (1109)
+
T Consensus 334 c 334 (477)
T 2id5_A 334 C 334 (477)
T ss_dssp C
T ss_pred C
Confidence 4
No 155
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=1.7e-36 Score=335.87 Aligned_cols=250 Identities=24% Similarity=0.367 Sum_probs=200.3
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 894 (1109)
.++|.+.+.||+|+||+||+|... +++.||+|++.... .......+.+|++++++++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 367889999999999999999765 57789999985432 223356789999999999999999999999999999999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
|||+++|+|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 88 ~e~~~~~~l~~~l~~~~---~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~ 161 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKLS---KFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS 161 (279)
T ss_dssp ECCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC--
T ss_pred EecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCc
Confidence 99999999999997654 3899999999999999999999 89999999999999999999999999999865433
Q ss_pred CCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 975 SPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 975 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
.. .....||+.|+|||.+.+..++.++||||+|+++|+|++|+.||...... ...............
T Consensus 162 ~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~---- 228 (279)
T 3fdn_A 162 SR----RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQ-----ETYKRISRVEFTFPD---- 228 (279)
T ss_dssp ----------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHHHHHHTCCCCCT----
T ss_pred cc----ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHH-----HHHHHHHhCCCCCCC----
Confidence 22 23357899999999999999999999999999999999999999643211 111111100000000
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
....++.+++.+|++.||++||+++|+++|-+
T Consensus 229 ------------~~~~~~~~li~~~l~~~p~~Rps~~e~l~h~~ 260 (279)
T 3fdn_A 229 ------------FVTEGARDLISRLLKHNPSQRPMLREVLEHPW 260 (279)
T ss_dssp ------------TSCHHHHHHHHHHCCSSGGGSCCHHHHHHCHH
T ss_pred ------------cCCHHHHHHHHHHhccChhhCCCHHHHhhCcc
Confidence 11234556788999999999999999998865
No 156
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=2.6e-36 Score=341.50 Aligned_cols=255 Identities=20% Similarity=0.288 Sum_probs=205.6
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccccc-----ChHHHHHHHHHHhcCCCCceeeEeeEEecCCce
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKR-----GSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCG 891 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 891 (1109)
.++|.+.+.||+|+||.||+|... +++.||+|.+....... ....+.+|++++++++||||+++++++...+..
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 467889999999999999999775 68999999986543322 356799999999999999999999999999999
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCC----cEEEeccc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEM----EPHISDFG 967 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~----~~kl~DfG 967 (1109)
++||||+++++|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+||+++.++ .+||+|||
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg 164 (321)
T 2a2a_A 91 VLILELVSGGELFDFLAQKE---SLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG 164 (321)
T ss_dssp EEEECCCCSCBHHHHHHTCS---CEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCT
T ss_pred EEEEEcCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEccCc
Confidence 99999999999999997633 4899999999999999999999 88999999999999999887 79999999
Q ss_pred CCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccc
Q 001275 968 IAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEE 1047 (1109)
Q Consensus 968 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1109)
+++....... .....||+.|+|||++.+..++.++||||+|+++|+|++|+.||...... ............
T Consensus 165 ~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-----~~~~~i~~~~~~ 236 (321)
T 2a2a_A 165 LAHEIEDGVE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ-----ETLANITSVSYD 236 (321)
T ss_dssp TCEECCTTCC---CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH-----HHHHHHHTTCCC
T ss_pred cceecCcccc---ccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHH-----HHHHHHHhcccc
Confidence 9987654322 23357999999999999999999999999999999999999999653211 111111111000
Q ss_pred cccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1048 INDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1048 ~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.++.. .......+.+++.+|++.||++||+++|+++|-+
T Consensus 237 ----~~~~~--------~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~hp~ 275 (321)
T 2a2a_A 237 ----FDEEF--------FSHTSELAKDFIRKLLVKETRKRLTIQEALRHPW 275 (321)
T ss_dssp ----CCHHH--------HTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHSTT
T ss_pred ----cChhh--------hcccCHHHHHHHHHHcCCChhhCcCHHHHhcCcc
Confidence 01100 0111234667888999999999999999998754
No 157
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.3e-37 Score=344.11 Aligned_cols=269 Identities=24% Similarity=0.317 Sum_probs=198.9
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccc-cChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHK-RGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
++|+..++||+|+||+||+|... +++.||+|++...... .....+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 57888999999999999999775 5899999988544322 224568899999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSP 976 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~ 976 (1109)
|+++++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 83 ~~~~~~l~~~~~~~~---~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 156 (311)
T 4agu_A 83 YCDHTVLHELDRYQR---GVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPS 156 (311)
T ss_dssp CCSEEHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC---
T ss_pred eCCCchHHHHHhhhc---CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcc
Confidence 999999999887543 4899999999999999999999 8899999999999999999999999999998765332
Q ss_pred CCceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcC-----------
Q 001275 977 ASTTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSD----------- 1044 (1109)
Q Consensus 977 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~----------- 1044 (1109)
. ......||+.|+|||++.+ ..++.++||||+|+++|+|++|+.||...... +....+......
T Consensus 157 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 232 (311)
T 4agu_A 157 D--YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDV--DQLYLIRKTLGDLIPRHQQVFST 232 (311)
T ss_dssp -----------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHHHCSCCHHHHHHHHT
T ss_pred c--ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHHhccccccccccccc
Confidence 2 2234578999999998876 66799999999999999999999999654221 111111111100
Q ss_pred ccccc--cccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1045 TEEIN--DIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1045 ~~~~~--~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
..... ...++..... ..........++.+++.+|++.||++|||++|+++|-+
T Consensus 233 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~ 287 (311)
T 4agu_A 233 NQYFSGVKIPDPEDMEP-LELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHHPY 287 (311)
T ss_dssp CGGGTTCCCCCCSSCCC-HHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTSGG
T ss_pred ccccccCcCCCccccch-hhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcChH
Confidence 00000 0000000000 00001122345677888999999999999999998754
No 158
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.6e-37 Score=341.88 Aligned_cols=256 Identities=21% Similarity=0.305 Sum_probs=203.9
Q ss_pred hCCCCCc-eeecccCeEEEEEEeC---CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEE
Q 001275 819 ENLNAKH-VIGRGAHGIVYKASLG---PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 819 ~~~~~~~-~lG~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 894 (1109)
++|.+.+ .||+|+||+||+|... ++..||||++...........+.+|++++++++||||+++++++ ..+..++|
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv 87 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLV 87 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEE
Confidence 4455555 8999999999999753 57889999986554455567899999999999999999999999 45678999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
|||+++|+|.+++... ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 88 ~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~ 162 (287)
T 1u59_A 88 MEMAGGGPLHKFLVGK--REEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGA 162 (287)
T ss_dssp EECCTTEEHHHHHTTC--TTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTT
T ss_pred EEeCCCCCHHHHHHhC--CccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceeeecc
Confidence 9999999999999753 235899999999999999999999 88999999999999999999999999999987754
Q ss_pred CCCC-ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 975 SPAS-TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 975 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
.... .......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||..... .+....+.. ... . ..
T Consensus 163 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~i~~---~~~-~-~~- 234 (287)
T 1u59_A 163 DDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG--PEVMAFIEQ---GKR-M-EC- 234 (287)
T ss_dssp CSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT--HHHHHHHHT---TCC-C-CC-
T ss_pred CcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH--HHHHHHHhc---CCc-C-CC-
Confidence 3221 11223457889999999988889999999999999999998 9999865322 111111111 000 0 00
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
......++.+++.+||+.||++||++.|++++|+.+
T Consensus 235 ------------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 270 (287)
T 1u59_A 235 ------------PPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 270 (287)
T ss_dssp ------------CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred ------------CCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 011223566788899999999999999999999875
No 159
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=3.2e-37 Score=350.05 Aligned_cols=271 Identities=25% Similarity=0.320 Sum_probs=205.6
Q ss_pred hCCCCCceeecccCeEEEEEEe-----CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEec--CCce
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-----GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLR--KDCG 891 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~ 891 (1109)
++|+..+.||+|+||.||+|++ .+++.||||++... .......+.+|++++++++||||+++++++.. ....
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 101 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS-GPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 101 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC-CHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence 5788899999999999999984 46889999998433 33445678999999999999999999999874 4568
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKL 971 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~ 971 (1109)
++||||+++|+|.+++..... .+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~ 176 (327)
T 3lxl_A 102 RLVMEYLPSGCLRDFLQRHRA--RLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKL 176 (327)
T ss_dssp EEEEECCTTCBHHHHHHHHGG--GCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGGCEE
T ss_pred EEEEeecCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEccccccee
Confidence 999999999999999976432 4899999999999999999999 89999999999999999999999999999987
Q ss_pred cCCCCCCc-eeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcC--cccc
Q 001275 972 LDKSPAST-TSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSD--TEEI 1048 (1109)
Q Consensus 972 ~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~--~~~~ 1048 (1109)
........ ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||....... ....... ....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~------~~~~~~~~~~~~~ 250 (327)
T 3lxl_A 177 LPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEF------LRMMGCERDVPAL 250 (327)
T ss_dssp CCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHH------HHHCC----CCHH
T ss_pred cccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchh------hhhcccccccccH
Confidence 75433221 2223568888999999999889999999999999999999999985422110 0000000 0000
Q ss_pred ccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCC
Q 001275 1049 NDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASV 1102 (1109)
Q Consensus 1049 ~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 1102 (1109)
....+ ................++.+++.+||+.||++||+++|++++|+.+..
T Consensus 251 ~~~~~-~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~ 303 (327)
T 3lxl_A 251 SRLLE-LLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWS 303 (327)
T ss_dssp HHHHH-HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC--
T ss_pred HHHHH-HhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 00000 000000000111223457778889999999999999999999998743
No 160
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=3.8e-37 Score=347.24 Aligned_cols=263 Identities=20% Similarity=0.323 Sum_probs=195.2
Q ss_pred HHhhCCCCCceeecccCeEEEEEEeC----CCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCc
Q 001275 816 EATENLNAKHVIGRGAHGIVYKASLG----PNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDC 890 (1109)
Q Consensus 816 ~~~~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 890 (1109)
...++|...+.||+|+||+||+|... .++.||+|++..... ......+.+|++++++++||||+++++++...+.
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 110 (313)
T 3brb_A 31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS 110 (313)
T ss_dssp CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC---
T ss_pred cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc
Confidence 34577888999999999999999653 345899999854432 2334678999999999999999999999987553
Q ss_pred -----eeEEEEeccCCCHHHHHhcc---CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEE
Q 001275 891 -----GIIMYRYMENGSLRDVLHSI---TPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPH 962 (1109)
Q Consensus 891 -----~~lv~e~~~~gsL~~~l~~~---~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~k 962 (1109)
.++||||+++|+|.+++... .....+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+|
T Consensus 111 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~k 187 (313)
T 3brb_A 111 QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMTVC 187 (313)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSCEE
T ss_pred cCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEE
Confidence 49999999999999998542 23346899999999999999999999 89999999999999999999999
Q ss_pred EecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHh
Q 001275 963 ISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSV 1041 (1109)
Q Consensus 963 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~ 1041 (1109)
|+|||+++...............+++.|+|||.+.+..++.++||||||+++|||++ |+.||...... .....+..
T Consensus 188 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~~~~- 264 (313)
T 3brb_A 188 VADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH--EMYDYLLH- 264 (313)
T ss_dssp ECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHT-
T ss_pred EeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHH--HHHHHHHc-
Confidence 999999987654433333344567889999999999999999999999999999999 88888543221 11111111
Q ss_pred hcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCC
Q 001275 1042 WSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDAS 1101 (1109)
Q Consensus 1042 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 1101 (1109)
... . . .......++.+++.+||+.||++||+++|++++|+++.
T Consensus 265 --~~~-~-~-------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~ 307 (313)
T 3brb_A 265 --GHR-L-K-------------QPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLL 307 (313)
T ss_dssp --TCC-C-C-------------CBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred --CCC-C-C-------------CCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 000 0 0 00112234677888999999999999999999998763
No 161
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=7.5e-37 Score=349.56 Aligned_cols=270 Identities=16% Similarity=0.191 Sum_probs=200.5
Q ss_pred hCCCCCceeecccCeEEEEEEeC----CCcEEEEEEeeecccc----------cChHHHHHHHHHHhcCCCCceeeEeeE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG----PNAVFAVKKLAFRGHK----------RGSLSMKREIQTIGKIRHRNLVRLEDF 884 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~----------~~~~~~~~E~~~l~~l~h~niv~l~~~ 884 (1109)
++|.+.+.||+|+||+||+|... ++..||+|++...... .....+.+|+..++.++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 56888999999999999999875 5788999988543211 123346788999999999999999999
Q ss_pred Eec----CCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCC-
Q 001275 885 WLR----KDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEM- 959 (1109)
Q Consensus 885 ~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~- 959 (1109)
+.. ....++||||+ +++|.+++.... .+++..++.++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~ 189 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG---TFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYKNP 189 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHCBGGG---BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESSST
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccCCC
Confidence 987 67889999999 999999997654 5899999999999999999999 88999999999999998877
Q ss_pred -cEEEecccCCcccCCCCCC-----ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCcccccc
Q 001275 960 -EPHISDFGIAKLLDKSPAS-----TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTD 1033 (1109)
Q Consensus 960 -~~kl~DfGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~ 1033 (1109)
.+||+|||+++.+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.........
T Consensus 190 ~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~ 269 (345)
T 2v62_A 190 DQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVA 269 (345)
T ss_dssp TSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHH
T ss_pred CcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHH
Confidence 9999999999876432211 1113457999999999999999999999999999999999999999542222111
Q ss_pred HHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCCCCC
Q 001275 1034 IVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASVPMT 1105 (1109)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~ 1105 (1109)
......... ............ ......++.+++.+||+.||++||+++|+++.|++...+..
T Consensus 270 ~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~ 331 (345)
T 2v62_A 270 VQTAKTNLL-------DELPQSVLKWAP---SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGIPLG 331 (345)
T ss_dssp HHHHHHHHH-------HTTTHHHHHHSC---TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCCCCC
T ss_pred HHHHHHhhc-------ccccHHHHhhcc---ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCCccc
Confidence 111111100 000100000000 00223457778889999999999999999999998866543
No 162
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.3e-36 Score=335.95 Aligned_cols=249 Identities=23% Similarity=0.302 Sum_probs=180.3
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|++.+.||+|+||+||+|.. .+++.||+|++.... .......+.+|++++++++||||+++++++...+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 5799999999999999999975 468999999985432 2334567899999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+ ++++.+++.... .+++..+..++.|+++|++||| +.+|+||||||+||++++++.+||+|||++......
T Consensus 93 e~~-~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 165 (275)
T 2eue_A 93 EYA-GNELFDYIVQRD---KMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG 165 (275)
T ss_dssp ECC-CEEHHHHHHTSS---SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCSSCC------
T ss_pred hhc-CCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCCeeccCChHhEEECCCCCEEEeecccceeccCc
Confidence 999 678888887643 4899999999999999999999 889999999999999999999999999999866433
Q ss_pred CCCceeeecccCcccccccccccCCC-CccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAK-SKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
.. .....||+.|+|||.+.+..+ +.++||||+|+++|||++|+.||..... ................
T Consensus 166 ~~---~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~~~~~~~~~~~---- 233 (275)
T 2eue_A 166 NF---LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI-----PVLFKNISNGVYTLPK---- 233 (275)
T ss_dssp ------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHTCCCCCT----
T ss_pred cc---ccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhCCCCCCc----
Confidence 22 223569999999999988776 7899999999999999999999965321 1111111111111100
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
....++.+++.+|++.||++|||++|+++|-+
T Consensus 234 ------------~~~~~~~~li~~~l~~dP~~Rps~~e~l~h~~ 265 (275)
T 2eue_A 234 ------------FLSPGAAGLIKRMLIVNPLNRISIHEIMQDDW 265 (275)
T ss_dssp ------------TSCHHHHHHHHHHSCSSGGGSCCHHHHTTCHH
T ss_pred ------------cCCHHHHHHHHHHhhcCHhHCCCHHHHhhCCe
Confidence 11234566888999999999999999998654
No 163
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=9.5e-37 Score=351.52 Aligned_cols=249 Identities=22% Similarity=0.286 Sum_probs=194.0
Q ss_pred CceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEeccCCC
Q 001275 824 KHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRYMENGS 902 (1109)
Q Consensus 824 ~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs 902 (1109)
.+.||+|+||.||+|.. .+|+.||+|++.... ......+.+|++++++++||||+++++++...+..++||||+++|+
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~ 172 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRG-MKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGE 172 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCS-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCE
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc-cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCc
Confidence 56799999999999976 468999999985432 2345678999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee--CCCCcEEEecccCCcccCCCCCCce
Q 001275 903 LRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL--DSEMEPHISDFGIAKLLDKSPASTT 980 (1109)
Q Consensus 903 L~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll--~~~~~~kl~DfGla~~~~~~~~~~~ 980 (1109)
|.+++.... ..+++..+..++.|+++||+||| +.+|+||||||+||++ +.++.+||+|||+++.......
T Consensus 173 L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~--- 244 (373)
T 2x4f_A 173 LFDRIIDES--YNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK--- 244 (373)
T ss_dssp EHHHHHHTG--GGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB---
T ss_pred HHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc---
Confidence 999886532 34899999999999999999999 8899999999999999 6678999999999987654322
Q ss_pred eeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchhhhHHh
Q 001275 981 SISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLMEEM 1060 (1109)
Q Consensus 981 ~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 1060 (1109)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||...... ..+..+....+... . .
T Consensus 245 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~-~~~~~i~~~~~~~~-------~-~----- 310 (373)
T 2x4f_A 245 LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDA-ETLNNILACRWDLE-------D-E----- 310 (373)
T ss_dssp CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHHTCCCSC-------S-G-----
T ss_pred cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHhccCCCC-------h-h-----
Confidence 22357999999999999889999999999999999999999999654211 11111111111100 0 0
Q ss_pred hhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1061 LVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1061 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.......++.+++.+|++.||++||+++|+++|-+
T Consensus 311 ---~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~ 345 (373)
T 2x4f_A 311 ---EFQDISEEAKEFISKLLIKEKSWRISASEALKHPW 345 (373)
T ss_dssp ---GGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHH
T ss_pred ---hhccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcC
Confidence 00111234667888999999999999999998643
No 164
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.4e-37 Score=356.48 Aligned_cols=263 Identities=21% Similarity=0.218 Sum_probs=204.1
Q ss_pred HHHHhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCc
Q 001275 814 VIEATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDC 890 (1109)
Q Consensus 814 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 890 (1109)
.....++|+..++||+|+||+||+|+.. +++.||+|++.... .......+.+|.+++.+++||||+++++++.+.+.
T Consensus 56 ~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~ 135 (412)
T 2vd5_A 56 VRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENY 135 (412)
T ss_dssp HSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSE
T ss_pred ccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCE
Confidence 3344578999999999999999999874 68999999985432 12233458899999999999999999999999999
Q ss_pred eeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 891 GIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 891 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
.|+||||+++|+|.+++...+ ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 136 ~~lVmE~~~gg~L~~~l~~~~--~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL~DFGla~ 210 (412)
T 2vd5_A 136 LYLVMEYYVGGDLLTLLSKFG--ERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGSCL 210 (412)
T ss_dssp EEEEECCCCSCBHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred EEEEEcCCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEEeechhhe
Confidence 999999999999999997643 24899999999999999999999 8999999999999999999999999999998
Q ss_pred ccCCCCCCceeeecccCcccccccccc-------cCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhc
Q 001275 971 LLDKSPASTTSISVVGTIGYIAPENAF-------TTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWS 1043 (1109)
Q Consensus 971 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~ 1043 (1109)
....... ......+||+.|+|||++. +..++.++||||+||++|||++|+.||...... ........
T Consensus 211 ~~~~~~~-~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~-----~~~~~i~~ 284 (412)
T 2vd5_A 211 KLRADGT-VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTA-----ETYGKIVH 284 (412)
T ss_dssp ECCTTSC-EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHHHHHT
T ss_pred eccCCCc-cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHH-----HHHHHHHh
Confidence 7654322 2223458999999999887 356899999999999999999999999653211 11111110
Q ss_pred CccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCC---CCHHHHHHHhhh
Q 001275 1044 DTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNR---PNMRDVVRQLVD 1099 (1109)
Q Consensus 1044 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R---Ps~~evl~~L~~ 1099 (1109)
..... . -+.. ......++.+++.+|++ +|++| |+++|+++|-.-
T Consensus 285 ~~~~~-~--~p~~--------~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~Hpff 331 (412)
T 2vd5_A 285 YKEHL-S--LPLV--------DEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTHPFF 331 (412)
T ss_dssp HHHHC-C--CC------------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTSGGG
T ss_pred cccCc-C--CCcc--------ccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcCCCc
Confidence 00000 0 0000 00112345667779999 99998 699999988653
No 165
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7.3e-37 Score=347.73 Aligned_cols=257 Identities=25% Similarity=0.395 Sum_probs=197.9
Q ss_pred hCCCCCceeecccCeEEEEEEeCC-----CcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGP-----NAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 893 (1109)
.+|...+.||+|+||+||+|.... +..||||++...........+.+|++++++++||||+++++++...+..++
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 123 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI 123 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence 456677899999999999996542 245999998654444455678999999999999999999999999999999
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
||||+++|+|.+++.... ..+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 124 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~ 198 (333)
T 1mqb_A 124 ITEYMENGALDKFLREKD--GEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLE 198 (333)
T ss_dssp EEECCTTEEHHHHHHHTT--TCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred EEeCCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcchhhc
Confidence 999999999999997642 35899999999999999999999 8899999999999999999999999999998765
Q ss_pred CCCCC-ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccc
Q 001275 974 KSPAS-TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDI 1051 (1109)
Q Consensus 974 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1109)
..... .......+|+.|+|||.+.+..++.++|||||||++|||++ |+.||..... ......+ .... ...
T Consensus 199 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~--~~~~~~~---~~~~-~~~-- 270 (333)
T 1mqb_A 199 DDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN--HEVMKAI---NDGF-RLP-- 270 (333)
T ss_dssp ------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHHHHH---HTTC-CCC--
T ss_pred cccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCH--HHHHHHH---HCCC-cCC--
Confidence 43221 12223456889999999999999999999999999999999 9999864321 1111111 1110 000
Q ss_pred cchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1052 VDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1052 ~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
. ......++.+++.+||+.||++||+++|++++|+++
T Consensus 271 -~-----------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~ 307 (333)
T 1mqb_A 271 -T-----------PMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 307 (333)
T ss_dssp -C-----------CTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred -C-----------cccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 0 011223466788899999999999999999999864
No 166
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.1e-36 Score=348.52 Aligned_cols=265 Identities=22% Similarity=0.255 Sum_probs=201.5
Q ss_pred HHHHhhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc----cccChHHHHHHHHHHhcCCCCceeeEeeEEecC
Q 001275 814 VIEATENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG----HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK 888 (1109)
Q Consensus 814 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~----~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 888 (1109)
+....++|.+.+.||+|+||+||+|.. .+++.||+|++.... .......+.+|++++++++||||+++++++.+.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 456678899999999999999999976 468899999985432 234456789999999999999999999999999
Q ss_pred CceeEEEEeccCCCHHHHHhccCC-------------------------------------CCCCCHHHHHHHHHHHHHH
Q 001275 889 DCGIIMYRYMENGSLRDVLHSITP-------------------------------------PPTLEWNVRYKIALGAAHA 931 (1109)
Q Consensus 889 ~~~~lv~e~~~~gsL~~~l~~~~~-------------------------------------~~~l~~~~~~~i~~~i~~~ 931 (1109)
+..++||||+++|+|.+++..... ...+++..+..++.|+++|
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~ 180 (345)
T 3hko_A 101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA 180 (345)
T ss_dssp SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 999999999999999999853110 1123577788999999999
Q ss_pred HHHhhcCCCCCeEEeccCCCCeeeCCCC--cEEEecccCCcccCCCCC--CceeeecccCccccccccccc--CCCCccC
Q 001275 932 LAYLHYDCDPPIVHRDIKPENILLDSEM--EPHISDFGIAKLLDKSPA--STTSISVVGTIGYIAPENAFT--TAKSKES 1005 (1109)
Q Consensus 932 L~~LH~~~~~~ivH~Dlk~~NIll~~~~--~~kl~DfGla~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~--~~~~~~s 1005 (1109)
|+||| +.+|+||||||+||+++.++ .+||+|||+++.+..... ........||+.|+|||++.+ ..++.++
T Consensus 181 l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~ 257 (345)
T 3hko_A 181 LHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKC 257 (345)
T ss_dssp HHHHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHH
T ss_pred HHHHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHH
Confidence 99999 88999999999999998776 899999999986533221 112334679999999998875 6789999
Q ss_pred cchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCC
Q 001275 1006 DVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPS 1085 (1109)
Q Consensus 1006 DvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~ 1085 (1109)
|||||||++|||++|+.||...... .............. .+. ......++.+++.+|++.||+
T Consensus 258 DiwslG~il~el~~g~~pf~~~~~~-----~~~~~~~~~~~~~~---~~~---------~~~~~~~~~~li~~~l~~~p~ 320 (345)
T 3hko_A 258 DAWSAGVLLHLLLMGAVPFPGVNDA-----DTISQVLNKKLCFE---NPN---------YNVLSPLARDLLSNLLNRNVD 320 (345)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHHHHHCCCCTT---SGG---------GGGSCHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCChH-----HHHHHHHhcccccC---Ccc---------cccCCHHHHHHHHHHcCCChh
Confidence 9999999999999999999654221 11111111110000 000 111223466788899999999
Q ss_pred CCCCHHHHHHHhh
Q 001275 1086 NRPNMRDVVRQLV 1098 (1109)
Q Consensus 1086 ~RPs~~evl~~L~ 1098 (1109)
+||++.|+++|-+
T Consensus 321 ~Rps~~~~l~hp~ 333 (345)
T 3hko_A 321 ERFDAMRALQHPW 333 (345)
T ss_dssp TSCCHHHHHHSHH
T ss_pred HCCCHHHHhcChh
Confidence 9999999999753
No 167
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.5e-37 Score=349.35 Aligned_cols=246 Identities=21% Similarity=0.289 Sum_probs=202.1
Q ss_pred HhhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccc-------cChHHHHHHHHHHhcCCCCceeeEeeEEecC
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHK-------RGSLSMKREIQTIGKIRHRNLVRLEDFWLRK 888 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 888 (1109)
..++|...+.||+|+||+||+|.. .+++.||||++...... .....+.+|++++++++||||+++++++...
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 357899999999999999999975 56889999998654321 1334577899999999999999999999999
Q ss_pred CceeEEEEeccCC-CHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEeccc
Q 001275 889 DCGIIMYRYMENG-SLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFG 967 (1109)
Q Consensus 889 ~~~~lv~e~~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfG 967 (1109)
+..++||||+.+| +|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~~~---~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg 175 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDRHP---RLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFG 175 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHTCC---CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCT
T ss_pred CEEEEEEEeCCCCccHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEeecc
Confidence 9999999999777 9999997643 4899999999999999999999 8899999999999999999999999999
Q ss_pred CCcccCCCCCCceeeecccCcccccccccccCCC-CccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcc
Q 001275 968 IAKLLDKSPASTTSISVVGTIGYIAPENAFTTAK-SKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTE 1046 (1109)
Q Consensus 968 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1109)
+++....... .....||+.|+|||++.+..+ +.++||||+||++|||++|+.||......
T Consensus 176 ~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~---------------- 236 (335)
T 3dls_A 176 SAAYLERGKL---FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET---------------- 236 (335)
T ss_dssp TCEECCTTCC---BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG----------------
T ss_pred cceECCCCCc---eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH----------------
Confidence 9987754332 223579999999999988877 88999999999999999999998642110
Q ss_pred ccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1047 EINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1047 ~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
........ . ....++.+++.+|++.||++||+++|++++-+
T Consensus 237 -~~~~~~~~-------~---~~~~~l~~li~~~L~~dP~~Rps~~ell~hp~ 277 (335)
T 3dls_A 237 -VEAAIHPP-------Y---LVSKELMSLVSGLLQPVPERRTTLEKLVTDPW 277 (335)
T ss_dssp -TTTCCCCS-------S---CCCHHHHHHHHHHTCSSGGGSCCHHHHHHCTT
T ss_pred -HhhccCCC-------c---ccCHHHHHHHHHHccCChhhCcCHHHHhcCcc
Confidence 00000000 0 01234667888999999999999999999854
No 168
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=2.3e-37 Score=373.72 Aligned_cols=262 Identities=26% Similarity=0.360 Sum_probs=210.8
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEec
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRYM 898 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 898 (1109)
++|...++||+|+||+||+|.+.++..||||++... .....+|.+|++++++++|+||+++++++.+ +..++||||+
T Consensus 267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~ 343 (535)
T 2h8h_A 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG--TMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYM 343 (535)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTT--SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCC
T ss_pred hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCC--CCCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehh
Confidence 567888999999999999999998889999998543 2345689999999999999999999999876 6789999999
Q ss_pred cCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCCC
Q 001275 899 ENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPAS 978 (1109)
Q Consensus 899 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~ 978 (1109)
++|+|.++++... ...+++..++.++.|+++||+||| +.+|+||||||+|||+++++.+||+|||+++...... .
T Consensus 344 ~~gsL~~~l~~~~-~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~ 418 (535)
T 2h8h_A 344 SKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-Y 418 (535)
T ss_dssp TTEEHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH-H
T ss_pred cCCcHHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc-e
Confidence 9999999997532 134889999999999999999999 8999999999999999999999999999998664321 1
Q ss_pred ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchhhh
Q 001275 979 TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLM 1057 (1109)
Q Consensus 979 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 1057 (1109)
.......++..|+|||++.+..++.++|||||||++|||++ |+.||..... .++...+.. ... . .
T Consensus 419 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~--~~~~~~i~~---~~~-~----~---- 484 (535)
T 2h8h_A 419 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--REVLDQVER---GYR-M----P---- 484 (535)
T ss_dssp HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCH--HHHHHHHHT---TCC-C----C----
T ss_pred ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHc---CCC-C----C----
Confidence 11223457789999999999999999999999999999999 8988864321 111111111 100 0 0
Q ss_pred HHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCCCCCCCC
Q 001275 1058 EEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASVPMTSKY 1108 (1109)
Q Consensus 1058 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~~ 1108 (1109)
.......++.+++.+||+.||++||+++|+++.|+++.....++|
T Consensus 485 ------~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~~~~ 529 (535)
T 2h8h_A 485 ------CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQY 529 (535)
T ss_dssp ------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCSCSS
T ss_pred ------CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccCccc
Confidence 001122346678889999999999999999999999977777666
No 169
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=350.80 Aligned_cols=251 Identities=14% Similarity=0.178 Sum_probs=200.2
Q ss_pred hhCCCCCceeecccCeEEEEE------EeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCC---CCceeeEeeEEecC
Q 001275 818 TENLNAKHVIGRGAHGIVYKA------SLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIR---HRNLVRLEDFWLRK 888 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~------~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~ 888 (1109)
.++|.+.++||+|+||+||+| ...+++.||||++.. ....++.+|++++.+++ |+||+++++++...
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~----~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~ 139 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKP----ANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ 139 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESS----CCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCC----CChhHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence 367888999999999999999 355789999999842 34557888888888886 99999999999999
Q ss_pred CceeEEEEeccCCCHHHHHhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCC---------
Q 001275 889 DCGIIMYRYMENGSLRDVLHSIT--PPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDS--------- 957 (1109)
Q Consensus 889 ~~~~lv~e~~~~gsL~~~l~~~~--~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~--------- 957 (1109)
+..++||||+++|+|.++++... ....+++..++.++.|+++||+||| +.+||||||||+|||++.
T Consensus 140 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~~ 216 (365)
T 3e7e_A 140 NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDED 216 (365)
T ss_dssp SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC----
T ss_pred CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCccccc
Confidence 99999999999999999997532 2345999999999999999999999 899999999999999998
Q ss_pred --CCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHH
Q 001275 958 --EMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIV 1035 (1109)
Q Consensus 958 --~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~ 1035 (1109)
++.+||+|||+|+.+.............||++|+|||++.+..++.++|||||||++|||++|+.||........
T Consensus 217 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~--- 293 (365)
T 3e7e_A 217 DLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGEC--- 293 (365)
T ss_dssp --CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEE---
T ss_pred cccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCce---
Confidence 899999999999866443344445567899999999999999999999999999999999999999854321110
Q ss_pred HHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCC-CCHHHHHHHhhhC
Q 001275 1036 GWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNR-PNMRDVVRQLVDA 1100 (1109)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R-Ps~~evl~~L~~~ 1100 (1109)
......... ...+. +.+++..|++.+|.+| |+++++.+.|++.
T Consensus 294 -----------~~~~~~~~~--------~~~~~---~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~ 337 (365)
T 3e7e_A 294 -----------KPEGLFRRL--------PHLDM---WNEFFHVMLNIPDCHHLPSLDLLRQKLKKV 337 (365)
T ss_dssp -----------EECSCCTTC--------SSHHH---HHHHHHHHHCCCCTTCCCCHHHHHHHHHHH
T ss_pred -----------eechhcccc--------CcHHH---HHHHHHHHcCCCCCCcchHHHHHHHHHHHH
Confidence 011111100 01222 3346668999999998 6778887777654
No 170
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=2e-36 Score=362.07 Aligned_cols=256 Identities=26% Similarity=0.324 Sum_probs=206.5
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|...++||+|+||.||+|+.. +|+.||+|++.... .......+.+|++++++++|||||++++++.+.+..|+||
T Consensus 184 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 263 (576)
T 2acx_A 184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVL 263 (576)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEE
Confidence 56888999999999999999775 68999999985532 2334567889999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+++|+|.+++.... ...+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 264 Ey~~gg~L~~~l~~~~-~~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~ 339 (576)
T 2acx_A 264 TLMNGGDLKFHIYHMG-QAGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG 339 (576)
T ss_dssp CCCCSCBHHHHHHSSS-SCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EcCCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeEEEecccceecccC
Confidence 9999999999997643 334899999999999999999999 889999999999999999999999999999876543
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
. .....+||+.|+|||++.+..++.++||||+||++|||++|+.||...... ..................
T Consensus 340 ~---~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~-~~~~~i~~~i~~~~~~~p------ 409 (576)
T 2acx_A 340 Q---TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKK-IKREEVERLVKEVPEEYS------ 409 (576)
T ss_dssp C---CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSC-CCHHHHHHHHHHCCCCCC------
T ss_pred c---cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccc-hhHHHHHHHhhcccccCC------
Confidence 2 223458999999999999989999999999999999999999999754221 111111111111110000
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHHhh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRP-----NMRDVVRQLV 1098 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~evl~~L~ 1098 (1109)
.....++.+++.+|++.||++|| +++|+++|-+
T Consensus 410 ----------~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~Hpf 447 (576)
T 2acx_A 410 ----------ERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPL 447 (576)
T ss_dssp ----------TTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTSGG
T ss_pred ----------ccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhChh
Confidence 01123456677899999999999 7899998754
No 171
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=1e-36 Score=345.06 Aligned_cols=252 Identities=21% Similarity=0.294 Sum_probs=181.1
Q ss_pred CceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCC-CCceeeEeeEEecCCceeEEEEeccCC
Q 001275 824 KHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIR-HRNLVRLEDFWLRKDCGIIMYRYMENG 901 (1109)
Q Consensus 824 ~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g 901 (1109)
.+.||+|+||+||+|... +++.||||++.. .....+.+|+.+++++. ||||+++++++.+.+..++||||+++|
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~----~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~ 91 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISK----RMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGG 91 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEG----GGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEECh----hhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCC
Confidence 478999999999999775 689999999843 23457889999999997 999999999999999999999999999
Q ss_pred CHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCC---cEEEecccCCcccCCCCCC
Q 001275 902 SLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEM---EPHISDFGIAKLLDKSPAS 978 (1109)
Q Consensus 902 sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~---~~kl~DfGla~~~~~~~~~ 978 (1109)
+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||+++.......
T Consensus 92 ~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~- 164 (325)
T 3kn6_A 92 ELFERIKKKK---HFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQ- 164 (325)
T ss_dssp BHHHHHHHCS---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC----
T ss_pred cHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCC-
Confidence 9999998743 4899999999999999999999 89999999999999997765 899999999986643322
Q ss_pred ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccc--cccHHHHHHHhhcCccccccccchhh
Q 001275 979 TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKE--RTDIVGWVRSVWSDTEEINDIVDLSL 1056 (1109)
Q Consensus 979 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~ 1056 (1109)
......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .................. ...
T Consensus 165 -~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~- 238 (325)
T 3kn6_A 165 -PLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSF----EGE- 238 (325)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCC----CSH-
T ss_pred -cccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCC----Ccc-
Confidence 223457899999999999999999999999999999999999999653221 111122222221111000 000
Q ss_pred hHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1057 MEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1057 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
.......++.+++.+|++.||++||+++|+++|-+-
T Consensus 239 -------~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h~w~ 274 (325)
T 3kn6_A 239 -------AWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWL 274 (325)
T ss_dssp -------HHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTCGGG
T ss_pred -------cccCCCHHHHHHHHHHCCCChhHCCCHHHHhcChhh
Confidence 011123456678889999999999999999987654
No 172
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=3.5e-36 Score=332.96 Aligned_cols=252 Identities=21% Similarity=0.260 Sum_probs=201.7
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
.++|.+.+.||+|+||+||+|... ++..||+|++... .......+.+|++++++++||||+++++++...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKY-FVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVME 86 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGG-GCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhh-ccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEe
Confidence 467899999999999999999765 4678999998543 33456789999999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee---CCCCcEEEecccCCcccC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL---DSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll---~~~~~~kl~DfGla~~~~ 973 (1109)
|+++++|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||++ +.++.+||+|||++....
T Consensus 87 ~~~~~~L~~~~~~~~---~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~ 160 (277)
T 3f3z_A 87 LCTGGELFERVVHKR---VFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFK 160 (277)
T ss_dssp CCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred ccCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccceecc
Confidence 999999999987644 3899999999999999999999 8899999999999999 788999999999998765
Q ss_pred CCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVD 1053 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1053 (1109)
.... .....||+.|+|||.+.+ .++.++||||+|+++|||++|+.||...... .. ........... .
T Consensus 161 ~~~~---~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~---~~~~~~~~~~~----~ 227 (277)
T 3f3z_A 161 PGKM---MRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDS--EV---MLKIREGTFTF----P 227 (277)
T ss_dssp TTSC---BCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--HH---HHHHHHCCCCC----C
T ss_pred Cccc---hhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCCHH--HH---HHHHHhCCCCC----C
Confidence 4322 233579999999998765 4899999999999999999999999653221 11 11111100000 0
Q ss_pred hhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1054 LSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
. . .......++.+++.+|++.||++||++.|+++|-
T Consensus 228 -~---~----~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~ 263 (277)
T 3f3z_A 228 -E---K----DWLNVSPQAESLIRRLLTKSPKQRITSLQALEHE 263 (277)
T ss_dssp -H---H----HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSH
T ss_pred -c---h----hhhcCCHHHHHHHHHHccCChhhCcCHHHHhcCH
Confidence 0 0 0011224566788899999999999999999764
No 173
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.7e-37 Score=343.14 Aligned_cols=258 Identities=23% Similarity=0.293 Sum_probs=201.7
Q ss_pred CCCCCceeecccCeEEEEEEeC-CC---cEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCce-eEE
Q 001275 820 NLNAKHVIGRGAHGIVYKASLG-PN---AVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCG-IIM 894 (1109)
Q Consensus 820 ~~~~~~~lG~G~~g~Vy~~~~~-~~---~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-~lv 894 (1109)
.|...++||+|+||+||+|... ++ ..||+|.+...........+.+|++++++++||||+++++++...+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 3455688999999999999753 22 379999885544444556789999999999999999999999876655 999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
+||+.+|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 102 ~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~ 176 (298)
T 3pls_A 102 LPYMCHGDLLQFIRSPQ--RNPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDILD 176 (298)
T ss_dssp ECCCTTCBHHHHHHCTT--CCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTT
T ss_pred EecccCCCHHHHHhccc--cCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCcccccC
Confidence 99999999999997633 35899999999999999999999 88999999999999999999999999999986643
Q ss_pred CCC--CceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 975 SPA--STTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 975 ~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
... ........+|+.|+|||.+.+..++.++||||+|+++|+|++|+.|+...... .+....+...... ..
T Consensus 177 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~-~~~~~~~~~~~~~--~~---- 249 (298)
T 3pls_A 177 REYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDP-FDLTHFLAQGRRL--PQ---- 249 (298)
T ss_dssp GGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCG-GGHHHHHHTTCCC--CC----
T ss_pred CcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCH-HHHHHHhhcCCCC--CC----
Confidence 221 12223457889999999999999999999999999999999977765443222 2222221111100 00
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCC
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDAS 1101 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 1101 (1109)
.......+.+++.+|++.||++|||++|+++.|+++.
T Consensus 250 ------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~ 286 (298)
T 3pls_A 250 ------------PEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIV 286 (298)
T ss_dssp ------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ------------CccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 0011234667888999999999999999999998763
No 174
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=3.6e-37 Score=349.67 Aligned_cols=259 Identities=24% Similarity=0.372 Sum_probs=202.5
Q ss_pred hCCCCCceeecccCeEEEEEEe------CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCcee
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL------GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGI 892 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 892 (1109)
++|.+.+.||+|+||+||+|+. .+++.||||++..........++.+|+.++++++||||+++++++...+..+
T Consensus 30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (327)
T 2yfx_A 30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF 109 (327)
T ss_dssp GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcE
Confidence 6788999999999999999974 3577899999865444555668899999999999999999999999999999
Q ss_pred EEEEeccCCCHHHHHhccCC----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCC---CCcEEEec
Q 001275 893 IMYRYMENGSLRDVLHSITP----PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDS---EMEPHISD 965 (1109)
Q Consensus 893 lv~e~~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~---~~~~kl~D 965 (1109)
+||||+++|+|.+++..... ...+++..++.++.|+++||+||| +.+|+||||||+||+++. +..+||+|
T Consensus 110 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~kl~D 186 (327)
T 2yfx_A 110 ILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGD 186 (327)
T ss_dssp EEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECC
T ss_pred EEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEEECc
Confidence 99999999999999987542 245899999999999999999999 889999999999999984 44699999
Q ss_pred ccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcC
Q 001275 966 FGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSD 1044 (1109)
Q Consensus 966 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~ 1044 (1109)
||+++...............||+.|+|||.+.+..++.++||||||+++|||++ |+.||..... ......+.. .
T Consensus 187 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~~~~---~ 261 (327)
T 2yfx_A 187 FGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--QEVLEFVTS---G 261 (327)
T ss_dssp CHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHHHHHHT---T
T ss_pred cccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCH--HHHHHHHhc---C
Confidence 999986544333333334578999999999999999999999999999999998 8888864321 111111111 1
Q ss_pred ccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1045 TEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1045 ~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.. . .. .......+.+++.+||+.||++||+++|++++++.+
T Consensus 262 ~~-~----~~----------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~ 302 (327)
T 2yfx_A 262 GR-M----DP----------PKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 302 (327)
T ss_dssp CC-C----CC----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CC-C----CC----------CCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 00 0 00 011123466788899999999999999999999864
No 175
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=3.3e-37 Score=354.94 Aligned_cols=199 Identities=28% Similarity=0.422 Sum_probs=175.8
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
++|...+.||+|+||+||+|... +++.||+|++...........+.+|++++++++||||+++++++...+..++||||
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 112 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH 112 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence 57888999999999999999775 68999999986654455566789999999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeEEeccCCCCeeeCCCCcEEEecccCCcccCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDP-PIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSP 976 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~-~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~ 976 (1109)
+++|+|.+++.... .+++..+..++.|++.|++||| +. +|+||||||+||+++.++.+||+|||++......
T Consensus 113 ~~~~~L~~~l~~~~---~~~~~~~~~i~~~i~~~l~~lh---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~- 185 (360)
T 3eqc_A 113 MDGGSLDQVLKKAG---RIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS- 185 (360)
T ss_dssp CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH-
T ss_pred CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc-
Confidence 99999999998654 3889999999999999999999 65 8999999999999999999999999999755322
Q ss_pred CCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCC
Q 001275 977 ASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPS 1027 (1109)
Q Consensus 977 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~ 1027 (1109)
......||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 186 ---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 233 (360)
T 3eqc_A 186 ---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP 233 (360)
T ss_dssp ---C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred ---cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 122357999999999999999999999999999999999999999754
No 176
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=5.1e-37 Score=340.05 Aligned_cols=257 Identities=25% Similarity=0.357 Sum_probs=204.9
Q ss_pred hhCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
.++|+..+.||+|+||+||+|...+++.||+|++... ......+.+|++++++++||||+++++++. .+..++||||
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~ 88 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG--SMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEY 88 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT--SSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCC--cccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEec
Confidence 3678889999999999999999988889999988432 334568999999999999999999999986 4568999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
+++|+|.+++.... ...+++..+..++.|+++||+||| +.+|+||||||+||++++++.+||+|||+++......
T Consensus 89 ~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 163 (279)
T 1qpc_A 89 MENGSLVDFLKTPS-GIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE- 163 (279)
T ss_dssp CTTCBHHHHTTSHH-HHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC-
T ss_pred CCCCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcc-
Confidence 99999999997532 124899999999999999999999 8999999999999999999999999999998765432
Q ss_pred CceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchhh
Q 001275 978 STTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSL 1056 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 1056 (1109)
........++..|+|||.+.+..++.++||||+|+++|||++ |+.||...... .....+ ..... ...
T Consensus 164 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~~---~~~~~----~~~--- 231 (279)
T 1qpc_A 164 YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP--EVIQNL---ERGYR----MVR--- 231 (279)
T ss_dssp EECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHH---HTTCC----CCC---
T ss_pred cccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHH--HHHHHH---hcccC----CCC---
Confidence 112223457889999999988889999999999999999999 88888643211 111111 11100 000
Q ss_pred hHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCC
Q 001275 1057 MEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASV 1102 (1109)
Q Consensus 1057 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 1102 (1109)
......++.+++.+|++.||++||+++|+++.|+++..
T Consensus 232 --------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 269 (279)
T 1qpc_A 232 --------PDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT 269 (279)
T ss_dssp --------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred --------cccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHH
Confidence 01112346678889999999999999999999987643
No 177
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=6e-37 Score=339.86 Aligned_cols=256 Identities=21% Similarity=0.279 Sum_probs=201.4
Q ss_pred hhCCCCCceeecccCeEEEEEEeCC----CcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLGP----NAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 893 (1109)
.++|...+.||+|+||+||+|.... +..||+|.+...........+.+|++++++++||||+++++++.+ +..++
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~ 89 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWI 89 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEE
Confidence 3678889999999999999997532 346999998655444556789999999999999999999999864 45789
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
||||+++|+|.+++.... ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 90 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 164 (281)
T 3cc6_A 90 IMELYPYGELGHYLERNK--NSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYIE 164 (281)
T ss_dssp EEECCTTCBHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC-
T ss_pred EEecCCCCCHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCcccc
Confidence 999999999999997643 34899999999999999999999 8999999999999999999999999999998764
Q ss_pred CCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
.... .......+|+.|+|||.+.+..++.++||||||+++|||++ |+.||...... +....+..... ..
T Consensus 165 ~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~--~~~~~~~~~~~--~~----- 234 (281)
T 3cc6_A 165 DEDY-YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENK--DVIGVLEKGDR--LP----- 234 (281)
T ss_dssp ---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGG--GHHHHHHHTCC--CC-----
T ss_pred cccc-cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChH--HHHHHHhcCCC--CC-----
Confidence 4321 12233567889999999998999999999999999999998 99998643221 22221111100 00
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.+ ......+.+++.+||+.||++||+++|++++|+++
T Consensus 235 ~~-----------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~ 271 (281)
T 3cc6_A 235 KP-----------DLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDV 271 (281)
T ss_dssp CC-----------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CC-----------CCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHH
Confidence 00 01123466788899999999999999999999865
No 178
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=4.6e-36 Score=342.91 Aligned_cols=272 Identities=24% Similarity=0.297 Sum_probs=209.5
Q ss_pred HHHHhhCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhc--CCCCceeeEeeEEecCC--
Q 001275 814 VIEATENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGK--IRHRNLVRLEDFWLRKD-- 889 (1109)
Q Consensus 814 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~-- 889 (1109)
-....++|.+.+.||+|+||+||+|+.. ++.||||++.. .....+.+|++++.. ++||||+++++++...+
T Consensus 37 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~----~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~ 111 (342)
T 1b6c_B 37 QRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSS----REERSWFREAEIYQTVMLRHENILGFIAADNKDNGT 111 (342)
T ss_dssp HHHHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEECG----GGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSS
T ss_pred cccccccEEEEeeecCCCCcEEEEEEEc-CccEEEEEeCc----hhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCc
Confidence 3455678999999999999999999885 89999999842 234567788888887 79999999999998876
Q ss_pred --ceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcC-----CCCCeEEeccCCCCeeeCCCCcEE
Q 001275 890 --CGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYD-----CDPPIVHRDIKPENILLDSEMEPH 962 (1109)
Q Consensus 890 --~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~-----~~~~ivH~Dlk~~NIll~~~~~~k 962 (1109)
..++||||+++|+|.+++... .+++..++.++.|++.||+|||.. ++.+|+||||||+||+++.++.+|
T Consensus 112 ~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~k 187 (342)
T 1b6c_B 112 WTQLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCC 187 (342)
T ss_dssp CCCEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEE
T ss_pred cceeEEEEeecCCCcHHHHHhcc----CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEE
Confidence 789999999999999999763 389999999999999999999932 146899999999999999999999
Q ss_pred EecccCCcccCCCCCCc--eeeecccCcccccccccccCC------CCccCcchhhHHHHHHHHhC----------CCCC
Q 001275 963 ISDFGIAKLLDKSPAST--TSISVVGTIGYIAPENAFTTA------KSKESDVYSYGVVLLELITR----------KKAL 1024 (1109)
Q Consensus 963 l~DfGla~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~------~~~~sDvwSlGvil~elltg----------~~p~ 1024 (1109)
|+|||+++......... ......||+.|+|||++.+.. ++.++|||||||++|||++| +.||
T Consensus 188 L~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~ 267 (342)
T 1b6c_B 188 IADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPY 267 (342)
T ss_dssp ECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTT
T ss_pred EEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCc
Confidence 99999998765433211 123457999999999887653 34789999999999999999 6677
Q ss_pred CCCccccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCCC
Q 001275 1025 DPSYKERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASVP 1103 (1109)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 1103 (1109)
............+........ . .+...... ...+....+.+++.+||+.||++||+++|++++|+++..+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~---~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~ 337 (342)
T 1b6c_B 268 YDLVPSDPSVEEMRKVVCEQK--L----RPNIPNRW---QSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 337 (342)
T ss_dssp TTTSCSSCCHHHHHHHHTTSC--C----CCCCCGGG---GTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred cccCcCcccHHHHHHHHHHHH--h----CCCCcccc---cchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence 554333333333332221111 0 11111101 1124556788899999999999999999999999987443
No 179
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=3e-36 Score=334.73 Aligned_cols=255 Identities=22% Similarity=0.311 Sum_probs=203.4
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
.++|++.+.||+|+||+||+|... +++.||+|++..... ......+.+|++++++++||||+++++++...+..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 367889999999999999999764 589999999865432 233467889999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCc---EEEecccCCccc
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEME---PHISDFGIAKLL 972 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~---~kl~DfGla~~~ 972 (1109)
||+++|+|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++. +||+|||++...
T Consensus 85 e~~~~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~ 158 (284)
T 3kk8_A 85 DLVTGGELFEDIVARE---FYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV 158 (284)
T ss_dssp CCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred ecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEc
Confidence 9999999999887643 4899999999999999999999 889999999999999986655 999999999866
Q ss_pred CCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 973 DKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 973 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
.... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||...... .....+.. ......
T Consensus 159 ~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~--~~~~~~~~---~~~~~~--- 227 (284)
T 3kk8_A 159 NDSE---AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH--RLYAQIKA---GAYDYP--- 227 (284)
T ss_dssp CSSC---BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHH---TCCCCC---
T ss_pred ccCc---cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchh--HHHHHHHh---ccccCC---
Confidence 5432 223457999999999999999999999999999999999999999653211 11111111 000000
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.+. ......++.+++.+|++.||++||+++|+++|-+
T Consensus 228 ~~~---------~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~ 264 (284)
T 3kk8_A 228 SPE---------WDTVTPEAKSLIDSMLTVNPKKRITADQALKVPW 264 (284)
T ss_dssp TTT---------TTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTSHH
T ss_pred chh---------hcccCHHHHHHHHHHcccChhhCCCHHHHhcCcc
Confidence 000 0111234667888999999999999999998754
No 180
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=1.3e-36 Score=360.01 Aligned_cols=252 Identities=21% Similarity=0.253 Sum_probs=194.8
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|+..++||+|+||.||+|.. .+++.||||++.... .......+.+|++++++++||||+++++++...+..++||
T Consensus 148 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~ 227 (446)
T 4ejn_A 148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVM 227 (446)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEEE
T ss_pred HHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEE
Confidence 5788999999999999999976 468999999986432 3334456788999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCD-PPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~-~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
||+++|+|.+++.... .+++..+..++.|++.||+||| + .+|+||||||+||+++.++.+||+|||+|+....
T Consensus 228 e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH---~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 301 (446)
T 4ejn_A 228 EYANGGELFFHLSRER---VFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK 301 (446)
T ss_dssp CCCSSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC
T ss_pred eeCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHh---hcCCEEECCCCHHHEEECCCCCEEEccCCCceeccC
Confidence 9999999999997644 4899999999999999999999 7 8999999999999999999999999999986433
Q ss_pred CCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 975 SPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 975 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
.. .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... ..............
T Consensus 302 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~-----~~~~~i~~~~~~~p----- 369 (446)
T 4ejn_A 302 DG--ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE-----KLFELILMEEIRFP----- 369 (446)
T ss_dssp -------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHHHHHCCCCCC-----
T ss_pred CC--cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHH-----HHHHHHHhCCCCCC-----
Confidence 22 2233468999999999999999999999999999999999999999653211 11111111111010
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHHhhh
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRP-----NMRDVVRQLVD 1099 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~evl~~L~~ 1099 (1109)
.....++.+++.+|++.||++|| +++|+++|-.-
T Consensus 370 -----------~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~hp~f 408 (446)
T 4ejn_A 370 -----------RTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFF 408 (446)
T ss_dssp -----------TTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGG
T ss_pred -----------ccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhCccc
Confidence 01123456688899999999999 99999987543
No 181
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.3e-36 Score=337.73 Aligned_cols=261 Identities=23% Similarity=0.258 Sum_probs=197.1
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccc--cChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHK--RGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 894 (1109)
.++|.+.+.||+|+||.||+|... +++.||+|++...... .....+.+|++++++++||||+++++++...+..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 367999999999999999999765 6889999998543222 2246788999999999999999999999999999999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
|||+++++|.+++.... .+++..+..++.|+++|++||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 113 ~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~ 186 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQG---PLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASATTD 186 (309)
T ss_dssp EECCCCEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC------
T ss_pred EEecCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCccccc
Confidence 99999999999998643 4899999999999999999999 88999999999999999999999999999986643
Q ss_pred CCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 975 SPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 975 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
... .......||+.|+|||.+.+..++.++||||||+++|||++|+.||...... .....+. ...... ..
T Consensus 187 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~---~~~~~~-~~--- 256 (309)
T 2h34_A 187 EKL-TQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--VMGAHIN---QAIPRP-ST--- 256 (309)
T ss_dssp -----------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--HHHHHHH---SCCCCG-GG---
T ss_pred ccc-ccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--HHHHHhc---cCCCCc-cc---
Confidence 321 2223457999999999999999999999999999999999999999653211 1111111 000000 00
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCC-CHHHHHHHhhhCCCC
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRP-NMRDVVRQLVDASVP 1103 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-s~~evl~~L~~~~~~ 1103 (1109)
. ......++.+++.+||+.||++|| +++|+++.|+.+...
T Consensus 257 ------~---~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~ 297 (309)
T 2h34_A 257 ------V---RPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALAT 297 (309)
T ss_dssp ------T---STTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC-
T ss_pred ------c---CCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHh
Confidence 0 011123456688899999999999 999999999987543
No 182
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=344.32 Aligned_cols=266 Identities=21% Similarity=0.289 Sum_probs=204.2
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEec----CCceeE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLR----KDCGII 893 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~l 893 (1109)
++|.+.+.||+|+||.||+|.. .+++.||||++... .......+.+|++++++++||||+++++++.. ....++
T Consensus 29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH-EQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES-SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC-CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 5788899999999999999976 67899999988543 33445678999999999999999999999873 346799
Q ss_pred EEEeccCCCHHHHHhccC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCccc
Q 001275 894 MYRYMENGSLRDVLHSIT-PPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLL 972 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~ 972 (1109)
||||+++|+|.+++.... ....+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++...
T Consensus 108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~ 184 (317)
T 2buj_A 108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQA 184 (317)
T ss_dssp EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence 999999999999997632 2345899999999999999999999 889999999999999999999999999998765
Q ss_pred CCCCCCc-------eeeecccCcccccccccccCC---CCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhh
Q 001275 973 DKSPAST-------TSISVVGTIGYIAPENAFTTA---KSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVW 1042 (1109)
Q Consensus 973 ~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~---~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~ 1042 (1109)
....... ......||+.|+|||.+.+.. ++.++||||||+++|||++|+.||................
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~-- 262 (317)
T 2buj_A 185 CIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQN-- 262 (317)
T ss_dssp CEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHC--
T ss_pred ccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhc--
Confidence 3211100 011245799999999887554 6889999999999999999999985321111111111110
Q ss_pred cCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCCCCCC
Q 001275 1043 SDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASVPMTS 1106 (1109)
Q Consensus 1043 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~ 1106 (1109)
.... ........++.+++.+||+.||++||+++|++++|+.+..+.++
T Consensus 263 --~~~~--------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~~ 310 (317)
T 2buj_A 263 --QLSI--------------PQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPG 310 (317)
T ss_dssp --C--C--------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCCC
T ss_pred --cCCC--------------CccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCCC
Confidence 0000 00011223567788899999999999999999999998666554
No 183
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=1.4e-36 Score=359.95 Aligned_cols=268 Identities=21% Similarity=0.246 Sum_probs=196.0
Q ss_pred hhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEecCC------
Q 001275 818 TENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKD------ 889 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 889 (1109)
.++|+..++||+|+||+||+|.. .+++.||||++.... .......+.+|+.++++++||||+++++++...+
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 46799999999999999999965 468999999985432 2334567889999999999999999999996553
Q ss_pred ceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCC
Q 001275 890 CGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIA 969 (1109)
Q Consensus 890 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla 969 (1109)
..|+||||+++ ++.+.+.. .+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+|
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~-----~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG~a 211 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLA 211 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCCC
T ss_pred eEEEEEeCCCC-CHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEEee
Confidence 46999999986 46666643 2889999999999999999999 889999999999999999999999999999
Q ss_pred cccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccc--
Q 001275 970 KLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEE-- 1047 (1109)
Q Consensus 970 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~-- 1047 (1109)
+...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ...+...+.........
T Consensus 212 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~-~~~~~~i~~~lg~p~~~~~ 287 (464)
T 3ttj_A 212 RTAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY-IDQWNKVIEQLGTPCPEFM 287 (464)
T ss_dssp -----CC---CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCSCCHHHH
T ss_pred eecCCCc---ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHhcCCCCHHHH
Confidence 8764332 22346899999999999999999999999999999999999999965321 11111111111100000
Q ss_pred ----------------cccccchhhhHHhh----hchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1048 ----------------INDIVDLSLMEEML----VSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1048 ----------------~~~~~d~~~~~~~~----~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.....-+....... .........++.+++.+|++.||++|||++|+++|-+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~ 358 (464)
T 3ttj_A 288 KKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPY 358 (464)
T ss_dssp TTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTT
T ss_pred HHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcChh
Confidence 00000000000000 0001122456788889999999999999999999854
No 184
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=2.8e-36 Score=351.01 Aligned_cols=253 Identities=21% Similarity=0.298 Sum_probs=190.4
Q ss_pred hCCCCC-ceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhc-CCCCceeeEeeEEec----CCce
Q 001275 819 ENLNAK-HVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGK-IRHRNLVRLEDFWLR----KDCG 891 (1109)
Q Consensus 819 ~~~~~~-~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~l~~~~~~----~~~~ 891 (1109)
++|... ++||+|+||+||+|... +++.||||++.. ...+.+|++++.+ .+||||+++++++.. .+..
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~------~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~ 134 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 134 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc------chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEE
Confidence 455555 68999999999999765 688999999842 2467788888754 589999999999875 5678
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCC---CCcEEEecccC
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDS---EMEPHISDFGI 968 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~---~~~~kl~DfGl 968 (1109)
|+||||+++|+|.+++.... ...+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||+
T Consensus 135 ~lv~E~~~gg~L~~~l~~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~ 210 (400)
T 1nxk_A 135 LIVMECLDGGELFSRIQDRG-DQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGF 210 (400)
T ss_dssp EEEEECCCSEEHHHHHHCC----CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSTTCCEEECCCTT
T ss_pred EEEEEeCCCCcHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcceEEEecCCCCccEEEEeccc
Confidence 99999999999999998643 245899999999999999999999 889999999999999987 78899999999
Q ss_pred CcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccc--cHHHHHHHhhcCcc
Q 001275 969 AKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERT--DIVGWVRSVWSDTE 1046 (1109)
Q Consensus 969 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~--~~~~~~~~~~~~~~ 1046 (1109)
++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||........ .....+... . .
T Consensus 211 a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~--~-~ 284 (400)
T 1nxk_A 211 AKETTSHN---SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMG--Q-Y 284 (400)
T ss_dssp CEECC--------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHT--C-C
T ss_pred ccccCCCC---ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcC--c-c
Confidence 98664322 22346789999999999999999999999999999999999999975432211 111111110 0 0
Q ss_pred ccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1047 EINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1047 ~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
. ...+ .......++.+++.+||+.||++|||++|+++|-+-
T Consensus 285 ~---~~~~---------~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~ 325 (400)
T 1nxk_A 285 E---FPNP---------EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWI 325 (400)
T ss_dssp C---CCTT---------TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHH
T ss_pred c---CCCc---------ccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccc
Confidence 0 0000 001122346678889999999999999999998643
No 185
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=351.69 Aligned_cols=269 Identities=27% Similarity=0.371 Sum_probs=194.1
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHH--HHHHhcCCCCceeeEeeEEec-----CCce
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKRE--IQTIGKIRHRNLVRLEDFWLR-----KDCG 891 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E--~~~l~~l~h~niv~l~~~~~~-----~~~~ 891 (1109)
++|.+.+.||+|+||+||+|+. +++.||||++... ....+..| +..+..++||||+++++++.. ....
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 87 (336)
T 3g2f_A 13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA----NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87 (336)
T ss_dssp TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc----chhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence 5788899999999999999977 5899999998432 22334444 444556899999999986543 2256
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC---------CeEEeccCCCCeeeCCCCcEE
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDP---------PIVHRDIKPENILLDSEMEPH 962 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~---------~ivH~Dlk~~NIll~~~~~~k 962 (1109)
++||||+++|+|.+++.... .++..+..++.|+++||+||| +. +|+||||||+||+++.++.+|
T Consensus 88 ~lv~e~~~~g~L~~~l~~~~----~~~~~~~~i~~qi~~~L~~LH---~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~k 160 (336)
T 3g2f_A 88 LLVMEYYPNGSLXKYLSLHT----SDWVSSCRLAHSVTRGLAYLH---TELPRGDHYKPAISHRDLNSRNVLVKNDGTCV 160 (336)
T ss_dssp EEEECCCTTCBHHHHHHHCC----BCHHHHHHHHHHHHHHHHHHH---CCBCCGGGCBCCEECSSCSGGGEEECTTSCEE
T ss_pred EEEEecCCCCcHHHHHhhcc----cchhHHHHHHHHHHHHHHHHH---hhhccccccccceeecccccceEEEcCCCcEE
Confidence 89999999999999997643 589999999999999999999 77 999999999999999999999
Q ss_pred EecccCCcccCCCCC------CceeeecccCccccccccccc-------CCCCccCcchhhHHHHHHHHhCCCCCCCCcc
Q 001275 963 ISDFGIAKLLDKSPA------STTSISVVGTIGYIAPENAFT-------TAKSKESDVYSYGVVLLELITRKKALDPSYK 1029 (1109)
Q Consensus 963 l~DfGla~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~sDvwSlGvil~elltg~~p~~~~~~ 1029 (1109)
|+|||+++.+..... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.|+.+...
T Consensus 161 L~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~ 240 (336)
T 3g2f_A 161 ISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGES 240 (336)
T ss_dssp ECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSC
T ss_pred EeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccc
Confidence 999999987653321 112234579999999998876 4557799999999999999999888755432
Q ss_pred ccccHHHHHHHhhcCc--cccccc-----cchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCC
Q 001275 1030 ERTDIVGWVRSVWSDT--EEINDI-----VDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDAS 1101 (1109)
Q Consensus 1030 ~~~~~~~~~~~~~~~~--~~~~~~-----~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 1101 (1109)
.......+........ ...... ..+.... ..........++.+++.+||+.||++|||++|+++.|+++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll 317 (336)
T 3g2f_A 241 VPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPE--AWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELM 317 (336)
T ss_dssp CCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCT--TCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred hhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCc--ccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHH
Confidence 2111100000000000 000000 0000000 00112234556888999999999999999999999998763
No 186
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=5e-36 Score=345.16 Aligned_cols=200 Identities=26% Similarity=0.329 Sum_probs=174.8
Q ss_pred HHhhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCC-----CCceeeEeeEEecCC
Q 001275 816 EATENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIR-----HRNLVRLEDFWLRKD 889 (1109)
Q Consensus 816 ~~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~l~~~~~~~~ 889 (1109)
...++|.+.++||+|+||+||+|+. .+++.||||++.. .......+..|++++++++ ||||+++++++...+
T Consensus 32 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~--~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~ 109 (360)
T 3llt_A 32 LLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN--IKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYD 109 (360)
T ss_dssp EETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS--CHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETT
T ss_pred EecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc--chhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECC
Confidence 3457899999999999999999977 5688999999842 2334456788999999996 999999999999999
Q ss_pred ceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCC------------
Q 001275 890 CGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDS------------ 957 (1109)
Q Consensus 890 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~------------ 957 (1109)
..++||||+ +++|.+++.... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 110 ~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~~~~~~ 184 (360)
T 3llt_A 110 HMCLIFEPL-GPSLYEIITRNN-YNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFEKSLITVRR 184 (360)
T ss_dssp EEEEEECCC-CCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCCEEEEEEEC
T ss_pred eeEEEEcCC-CCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEccccccccccchhc
Confidence 999999999 899999998644 234899999999999999999999 899999999999999975
Q ss_pred -------------CCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCC
Q 001275 958 -------------EMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKAL 1024 (1109)
Q Consensus 958 -------------~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~ 1024 (1109)
++.+||+|||+++...... ....||+.|+|||++.+..++.++||||+||++|||++|+.||
T Consensus 185 ~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf 259 (360)
T 3llt_A 185 VTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH-----GSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLF 259 (360)
T ss_dssp TTTCCEEEEEEESCCCEEECCCTTCEETTSCC-----CSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSC
T ss_pred ccccccccccccCCCCEEEEeccCceecCCCC-----cCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCC
Confidence 7889999999998654322 2357899999999999999999999999999999999999999
Q ss_pred CCC
Q 001275 1025 DPS 1027 (1109)
Q Consensus 1025 ~~~ 1027 (1109)
...
T Consensus 260 ~~~ 262 (360)
T 3llt_A 260 RTH 262 (360)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 187
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=333.61 Aligned_cols=252 Identities=22% Similarity=0.357 Sum_probs=183.2
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|.+.+.||+|+||+||+|+. .+++.||+|++.... .......+.+|++++++++||||+++++++...+..++||
T Consensus 11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (278)
T 3cok_A 11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVL 90 (278)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEE
Confidence 5788899999999999999976 578999999985432 2233467899999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+++++|.+++.... ..+++..++.++.|+++|++||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 91 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~ 165 (278)
T 3cok_A 91 EMCHNGEMNRYLKNRV--KPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMP 165 (278)
T ss_dssp ECCTTEEHHHHHHTCS--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC--
T ss_pred ecCCCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCC
Confidence 9999999999998642 35899999999999999999999 889999999999999999999999999999876433
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
.. ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||....... ........ .. .
T Consensus 166 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-----~~~~~~~~-----~~---~ 230 (278)
T 3cok_A 166 HE--KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKN-----TLNKVVLA-----DY---E 230 (278)
T ss_dssp ----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC----------CCSS-----CC---C
T ss_pred CC--cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHH-----HHHHHhhc-----cc---C
Confidence 21 1223578999999999999899999999999999999999999996532111 00000000 00 0
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
... ....++.+++.+|++.||++||+++|+++|-.
T Consensus 231 -----~~~---~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~ 265 (278)
T 3cok_A 231 -----MPS---FLSIEAKDLIHQLLRRNPADRLSLSSVLDHPF 265 (278)
T ss_dssp -----CCT---TSCHHHHHHHHHHSCSSGGGSCCHHHHTTSTT
T ss_pred -----Ccc---ccCHHHHHHHHHHcccCHhhCCCHHHHhcCcc
Confidence 000 11234567888999999999999999998654
No 188
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=371.87 Aligned_cols=249 Identities=21% Similarity=0.300 Sum_probs=196.9
Q ss_pred eeecccCeEEEEEEeC---CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEeccCCC
Q 001275 826 VIGRGAHGIVYKASLG---PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRYMENGS 902 (1109)
Q Consensus 826 ~lG~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs 902 (1109)
.||+|+||+||+|.+. ++..||||++..........++.+|++++++++|||||+++++|.. +..++||||+++|+
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~ 421 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP 421 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence 7999999999999663 4677999999665555567789999999999999999999999976 56899999999999
Q ss_pred HHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCCC-cee
Q 001275 903 LRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPAS-TTS 981 (1109)
Q Consensus 903 L~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~-~~~ 981 (1109)
|.+++... ...+++..+..++.|+++||+||| +.+|+||||||+||++++++.+||+|||+++........ ...
T Consensus 422 L~~~l~~~--~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~ 496 (613)
T 2ozo_A 422 LHKFLVGK--REEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTAR 496 (613)
T ss_dssp HHHHHTTC--TTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC---------
T ss_pred HHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeec
Confidence 99999753 345899999999999999999999 889999999999999999999999999999876443221 122
Q ss_pred eecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchhhhHHh
Q 001275 982 ISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLMEEM 1060 (1109)
Q Consensus 982 ~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 1060 (1109)
....+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... .++...+.. . ... .
T Consensus 497 ~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~--~~~~~~i~~---~-~~~-~---------- 559 (613)
T 2ozo_A 497 SAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG--PEVMAFIEQ---G-KRM-E---------- 559 (613)
T ss_dssp -----CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCS--HHHHHHHHT---T-CCC-C----------
T ss_pred cCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCH--HHHHHHHHc---C-CCC-C----------
Confidence 23456789999999999999999999999999999998 9999865422 122221111 0 000 0
Q ss_pred hhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1061 LVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1061 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.......++.+++.+||+.||++||+++|+++.|+.+
T Consensus 560 ---~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 596 (613)
T 2ozo_A 560 ---CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 596 (613)
T ss_dssp ---CCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHH
T ss_pred ---CCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 0011234567788899999999999999999999874
No 189
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=8.5e-37 Score=339.95 Aligned_cols=256 Identities=23% Similarity=0.320 Sum_probs=208.1
Q ss_pred hhCCCCCceeecccCeEEEEEEeCC-CcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLGP-NAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
.++|+..+.||+|+||+||+|.... +..||+|++.. .......+.+|++++++++||||+++++++...+..++|||
T Consensus 12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 89 (288)
T 3kfa_A 12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE--DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE 89 (288)
T ss_dssp GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECS--CSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCc--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence 4678889999999999999997764 78899998843 33345678999999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSP 976 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~ 976 (1109)
|+++|+|.+++.... ...+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 90 ~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~ 165 (288)
T 3kfa_A 90 FMTYGNLLDYLRECN-RQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT 165 (288)
T ss_dssp CCTTEEHHHHHHHCC-TTTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS
T ss_pred cCCCCcHHHHHHhcc-cCCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCEEEccCccceeccCCc
Confidence 999999999998643 345899999999999999999999 8899999999999999999999999999998765432
Q ss_pred CCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 977 ASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 977 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
........+|+.|+|||.+.+..++.++||||+|+++|+|++ |+.||..... ......+....... .
T Consensus 166 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~--~~~~~~~~~~~~~~-------~-- 233 (288)
T 3kfa_A 166 -YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL--SQVYELLEKDYRME-------R-- 233 (288)
T ss_dssp -SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG--GGHHHHHHTTCCCC-------C--
T ss_pred -cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHhccCCCC-------C--
Confidence 233334567889999999999999999999999999999999 8888864321 12222211110000 0
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
......++.+++.+|++.||++||+++|+++.|+..
T Consensus 234 ---------~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~ 269 (288)
T 3kfa_A 234 ---------PEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 269 (288)
T ss_dssp ---------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ---------CCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHH
Confidence 011123466788899999999999999999998764
No 190
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=5.5e-36 Score=332.45 Aligned_cols=253 Identities=22% Similarity=0.306 Sum_probs=201.0
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccc-----cChHHHHHHHHHHhcCCCCceeeEeeEEecCCcee
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHK-----RGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGI 892 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 892 (1109)
++|++.+.||+|+||+||+|... +++.||+|.+...... .....+.+|++++++++||||+++++++...+..+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 56888999999999999999776 6899999998654322 23567999999999999999999999999999999
Q ss_pred EEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCC----cEEEecccC
Q 001275 893 IMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEM----EPHISDFGI 968 (1109)
Q Consensus 893 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~----~~kl~DfGl 968 (1109)
+||||+++++|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+||+++.++ .+||+|||+
T Consensus 85 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~ 158 (283)
T 3bhy_A 85 LILELVSGGELFDFLAEKE---SLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGI 158 (283)
T ss_dssp EEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred EEEeecCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEeccc
Confidence 9999999999999997643 4899999999999999999999 88999999999999998877 899999999
Q ss_pred CcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccc
Q 001275 969 AKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEI 1048 (1109)
Q Consensus 969 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1109)
+........ .....||+.|+|||++.+..++.++||||+|+++|+|++|+.||...... ............
T Consensus 159 ~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~- 229 (283)
T 3bhy_A 159 AHKIEAGNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQ-----ETLTNISAVNYD- 229 (283)
T ss_dssp CEECC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHHHHHTTCCC-
T ss_pred ceeccCCCc---ccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchH-----HHHHHhHhcccC-
Confidence 987644322 23357999999999999999999999999999999999999998653211 111111110000
Q ss_pred ccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1049 NDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1049 ~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
..... .......+.+++.+|++.||++||++.|+++|-
T Consensus 230 ---~~~~~--------~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~ 267 (283)
T 3bhy_A 230 ---FDEEY--------FSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHS 267 (283)
T ss_dssp ---CCHHH--------HTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCH
T ss_pred ---Ccchh--------cccCCHHHHHHHHHHccCCHhHCcCHHHHHhCH
Confidence 00000 011223466788899999999999999999853
No 191
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=2.4e-36 Score=354.04 Aligned_cols=258 Identities=22% Similarity=0.302 Sum_probs=193.1
Q ss_pred HHhhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeeccc-------ccChHHHHHHHHHHhcCCCCceeeEeeEEec
Q 001275 816 EATENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGH-------KRGSLSMKREIQTIGKIRHRNLVRLEDFWLR 887 (1109)
Q Consensus 816 ~~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 887 (1109)
...++|...+.||+|+||+||+|.. .+++.||||++..... ......+.+|++++++++||||+++++++..
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 211 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 211 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence 4467899999999999999999966 4579999999864321 1122357899999999999999999999854
Q ss_pred CCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCC---CcEEEe
Q 001275 888 KDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSE---MEPHIS 964 (1109)
Q Consensus 888 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~---~~~kl~ 964 (1109)
+..++||||+++|+|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+||+++.+ ..+||+
T Consensus 212 -~~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kl~ 284 (419)
T 3i6u_A 212 -EDYYIVLELMEGGELFDKVVGNK---RLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKIT 284 (419)
T ss_dssp -SEEEEEEECCTTCBGGGGTSSSC---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSSSCCEEEC
T ss_pred -CceEEEEEcCCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCCCcceEEEe
Confidence 55799999999999999887543 4899999999999999999999 8899999999999999654 459999
Q ss_pred cccCCcccCCCCCCceeeecccCccccccccccc---CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHh
Q 001275 965 DFGIAKLLDKSPASTTSISVVGTIGYIAPENAFT---TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSV 1041 (1109)
Q Consensus 965 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~ 1041 (1109)
|||+++...... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ......+...
T Consensus 285 DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~-~~~~~~i~~~ 360 (419)
T 3i6u_A 285 DFGHSKILGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ-VSLKDQITSG 360 (419)
T ss_dssp CSSTTTSCC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSS-CCHHHHHHTT
T ss_pred ecccceecCCCc---cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcch-HHHHHHHhcC
Confidence 999998765332 2234679999999998863 66789999999999999999999999653222 1222111110
Q ss_pred hcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1042 WSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1042 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
. . .. .+. .......++.+++.+|++.||++||+++|+++|-+-
T Consensus 361 ~---~---~~-~~~--------~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~ 403 (419)
T 3i6u_A 361 K---Y---NF-IPE--------VWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWL 403 (419)
T ss_dssp C---C---CC-CHH--------HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGG
T ss_pred C---C---CC-Cch--------hhcccCHHHHHHHHHHccCChhHCcCHHHHhCCccc
Confidence 0 0 00 000 011123446678889999999999999999998653
No 192
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=1e-36 Score=348.04 Aligned_cols=251 Identities=26% Similarity=0.377 Sum_probs=199.6
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeeccc--ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGH--KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
+.|...+.||+|+||+||+|.. .+++.||||++..... .....++.+|++++++++||||+++++++...+..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 4588889999999999999976 5789999999854332 223457889999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||++ |++.+++.... ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 134 e~~~-g~l~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~ 207 (348)
T 1u5q_A 134 EYCL-GSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA 207 (348)
T ss_dssp ECCS-EEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB
T ss_pred ecCC-CCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC
Confidence 9997 68888886533 34899999999999999999999 889999999999999999999999999999866432
Q ss_pred CCCceeeecccCcccccccccc---cCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 976 PASTTSISVVGTIGYIAPENAF---TTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
....||+.|+|||++. +..++.++|||||||++|||++|+.||...... ............ ...
T Consensus 208 ------~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~-----~~~~~~~~~~~~--~~~ 274 (348)
T 1u5q_A 208 ------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM-----SALYHIAQNESP--ALQ 274 (348)
T ss_dssp ------CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH-----HHHHHHHHSCCC--CCC
T ss_pred ------CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH-----HHHHHHHhcCCC--CCC
Confidence 2357999999999884 567899999999999999999999998643211 111111111100 000
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
. ... ...+.+++.+||+.||++||+++|++++.+-.
T Consensus 275 ~---------~~~---~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~~ 310 (348)
T 1u5q_A 275 S---------GHW---SEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVL 310 (348)
T ss_dssp C---------TTS---CHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHH
T ss_pred C---------CCC---CHHHHHHHHHHcccChhhCcCHHHHhhChhhh
Confidence 0 011 22355677899999999999999999887654
No 193
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.7e-36 Score=367.26 Aligned_cols=351 Identities=20% Similarity=0.154 Sum_probs=218.9
Q ss_pred CCCcccCCCCCCCCCCce----eeeEEecCCCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCC
Q 001275 43 VPPLIISSWNSSDSTPCQ----WVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNC 118 (1109)
Q Consensus 43 ~~~~~l~sW~~~~~~~c~----w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 118 (1109)
+....+++|..... ||. |.++.|+. ++ +....... ....-..+++++.|++++|.++...+..++.+
T Consensus 4 ~~~~~l~~~~~~~~-C~~~~~~~~c~~~~~---~i---~~~~~~~~--~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l 74 (597)
T 3oja_B 4 QQRYNVKPRQPEYK-CIDSNLQYDCVFYDV---HI---DMQTQDVY--FGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 74 (597)
T ss_dssp -------CCCSEEC-CCCC--CCSEEECSC---EE---CSSCCCCE--ESCSSGGGCCCSEEEESSCEESEECTHHHHHC
T ss_pred cccccccCCCCCCc-CcccCcCceeEecCc---ee---cccccccc--cCcccccCCCceEEEeeCCCCCCcCHHHHccC
Confidence 34456789987654 442 66665542 11 11111111 11122346788889999888886555557888
Q ss_pred CCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeec
Q 001275 119 SALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWL 198 (1109)
Q Consensus 119 ~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 198 (1109)
++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..++.+++|++|+|++|.+++..+..|+++++|++|+|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 88999999999888877778888888999999888888777777788888888888888888655556688888888888
Q ss_pred ccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCC
Q 001275 199 FSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGG 278 (1109)
Q Consensus 199 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 278 (1109)
++|.+++..|..|+++++|++|+|++|.+++.. +..+++|+.|++++|.+++. ...++|+.|++++|.++..
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV 226 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEE
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccc
Confidence 888888777777888888888888888877652 45566777777777777642 2234566666666666532
Q ss_pred CCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCC
Q 001275 279 ISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQL 358 (1109)
Q Consensus 279 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 358 (1109)
.+. + .++|+.|++++|.+++ +..++.+++|+.|+|++|.+++.+|..|+.+++|+.|+|++|.+++ +|..+..+
T Consensus 227 ~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 300 (597)
T 3oja_B 227 RGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 300 (597)
T ss_dssp ECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCC
T ss_pred ccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccC
Confidence 221 1 2456666666666654 2445555666666666666655555556666666666666666553 34444555
Q ss_pred CCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCc
Q 001275 359 SNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFS 420 (1109)
Q Consensus 359 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 420 (1109)
++|++|+|++|+++ .+|..+..+++|++|++++|.+++.. +..+++|+.|++++|+++
T Consensus 301 ~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCC
Confidence 55555555555555 34444555555555555555554321 233344444444444443
No 194
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=1.3e-36 Score=345.07 Aligned_cols=256 Identities=21% Similarity=0.312 Sum_probs=200.3
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcE--EEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCceeEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAV--FAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 894 (1109)
++|...+.||+|+||.||+|+.. ++.. +|+|++...........+.+|+++++++ +||||+++++++...+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 57888999999999999999764 4554 4899886555555567899999999999 899999999999999999999
Q ss_pred EEeccCCCHHHHHhccC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcE
Q 001275 895 YRYMENGSLRDVLHSIT-------------PPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEP 961 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~ 961 (1109)
|||+++|+|.+++.... ....+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+
T Consensus 105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~ 181 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVA 181 (327)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCE
T ss_pred EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCeE
Confidence 99999999999997643 2245899999999999999999999 8999999999999999999999
Q ss_pred EEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHH
Q 001275 962 HISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRS 1040 (1109)
Q Consensus 962 kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~ 1040 (1109)
||+|||+++..... .......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||..... ......
T Consensus 182 kL~Dfg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~-----~~~~~~ 253 (327)
T 1fvr_A 182 KIADFGLSRGQEVY---VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-----AELYEK 253 (327)
T ss_dssp EECCTTCEESSCEE---CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHH
T ss_pred EEcccCcCcccccc---ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcH-----HHHHHH
Confidence 99999999744321 11223467889999999988889999999999999999998 9999865321 111111
Q ss_pred hhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1041 VWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1041 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
..... .. . .......++.+++.+||+.||++||+++|++++|.++
T Consensus 254 ~~~~~-~~------~--------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 298 (327)
T 1fvr_A 254 LPQGY-RL------E--------KPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 298 (327)
T ss_dssp GGGTC-CC------C--------CCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred hhcCC-CC------C--------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 11100 00 0 0011123466788899999999999999999999875
No 195
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=5.1e-36 Score=337.47 Aligned_cols=260 Identities=19% Similarity=0.317 Sum_probs=195.0
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
.+|++.+.||+|+||.||+|.. .+++.||+|++.... .......+.+|++++++++||||+++++++...+..++||
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 111 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL 111 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEE
Confidence 5788999999999999999976 578999999985422 2233567889999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 896 RYMENGSLRDVLHSIT-PPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
||+++|+|.+++.... ....+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 112 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~ 188 (310)
T 2wqm_A 112 ELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS 188 (310)
T ss_dssp ECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC--------
T ss_pred ecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecC
Confidence 9999999999986532 2345899999999999999999999 88999999999999999999999999999986643
Q ss_pred CCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 975 SPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 975 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
... ......|++.|+|||.+.+..++.++||||||+++|||++|+.||....... ........... .....
T Consensus 189 ~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~---~~~~~~~~~~~--~~~~~-- 259 (310)
T 2wqm_A 189 KTT--AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL---YSLCKKIEQCD--YPPLP-- 259 (310)
T ss_dssp ------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCH---HHHHHHHHTTC--SCCCC--
T ss_pred CCc--cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhH---HHHHHHhhccc--CCCCc--
Confidence 221 2223578999999999999999999999999999999999999986432221 11111111100 00000
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
......++.+++.+||+.||++||+++|++++|+++
T Consensus 260 ----------~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l 295 (310)
T 2wqm_A 260 ----------SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRM 295 (310)
T ss_dssp ----------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ----------ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 001123466788899999999999999999999876
No 196
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=1.2e-36 Score=343.55 Aligned_cols=262 Identities=21% Similarity=0.275 Sum_probs=196.4
Q ss_pred hCCCCC-ceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAK-HVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~-~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
+.|.+. ++||+|+||+||+|.. .+++.||||++... .......+.+|++++.++ +||||+++++++...+..++||
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~ 90 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQ-PGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF 90 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECC-SSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeC-cchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence 457664 7899999999999975 46899999998543 344567889999999985 7999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCc---EEEecccCCccc
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEME---PHISDFGIAKLL 972 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~---~kl~DfGla~~~ 972 (1109)
||+++|+|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+||+++.++. +||+|||+++..
T Consensus 91 e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~ 164 (316)
T 2ac3_A 91 EKMRGGSILSHIHKRR---HFNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGI 164 (316)
T ss_dssp ECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC--
T ss_pred EcCCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCcccc
Confidence 9999999999998643 4899999999999999999999 889999999999999988776 999999999865
Q ss_pred CCCCC-----CceeeecccCccccccccccc-----CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccH--------
Q 001275 973 DKSPA-----STTSISVVGTIGYIAPENAFT-----TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDI-------- 1034 (1109)
Q Consensus 973 ~~~~~-----~~~~~~~~gt~~y~aPE~~~~-----~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~-------- 1034 (1109)
..... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||..........
T Consensus 165 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 244 (316)
T 2ac3_A 165 KLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPA 244 (316)
T ss_dssp -----------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHH
T ss_pred ccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchh
Confidence 42211 111223469999999998875 557899999999999999999999997543221000
Q ss_pred --HHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1035 --VGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1035 --~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
............ .. . .. .......++.+++.+|++.||++||+++|+++|-+-
T Consensus 245 ~~~~~~~~i~~~~~---~~-~----~~----~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~ 299 (316)
T 2ac3_A 245 CQNMLFESIQEGKY---EF-P----DK----DWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWV 299 (316)
T ss_dssp HHHHHHHHHHHCCC---CC-C----HH----HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSTTC
T ss_pred HHHHHHHHHhccCc---cc-C----ch----hcccCCHHHHHHHHHHhhCChhhCCCHHHHhcChhh
Confidence 000000000000 00 0 00 001122456778889999999999999999997653
No 197
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=3.6e-36 Score=345.73 Aligned_cols=250 Identities=24% Similarity=0.307 Sum_probs=191.0
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc--ccChHHHHHHHHH-HhcCCCCceeeEeeEEecCCceeEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH--KRGSLSMKREIQT-IGKIRHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~lv 894 (1109)
++|+..++||+|+||+||+|+.. +++.||+|++..... ......+.+|..+ ++.++||||+++++++...+..|+|
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv 117 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFV 117 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEE
Confidence 57889999999999999999775 578999999965432 2234456677776 5678999999999999999999999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
|||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 118 ~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~ 191 (373)
T 2r5t_A 118 LDYINGGELFYHLQRER---CFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE 191 (373)
T ss_dssp EECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC
T ss_pred EeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCcccccccc
Confidence 99999999999997644 3889999999999999999999 89999999999999999999999999999986432
Q ss_pred CCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 975 SPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 975 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
.. ......+||+.|+|||++.+..++.++||||+||++|||++|+.||..... .............. .
T Consensus 192 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-----~~~~~~i~~~~~~~----~- 259 (373)
T 2r5t_A 192 HN--STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT-----AEMYDNILNKPLQL----K- 259 (373)
T ss_dssp CC--CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH-----HHHHHHHHHSCCCC----C-
T ss_pred CC--CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH-----HHHHHHHHhcccCC----C-
Confidence 21 122346899999999999999999999999999999999999999964321 11111111111000 0
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHH----HHHHHh
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMR----DVVRQL 1097 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~----evl~~L 1097 (1109)
.... .++.+++.+|++.||++||++. |+.+|-
T Consensus 260 --------~~~~---~~~~~li~~lL~~dp~~R~~~~~~~~~i~~h~ 295 (373)
T 2r5t_A 260 --------PNIT---NSARHLLEGLLQKDRTKRLGAKDDFMEIKSHV 295 (373)
T ss_dssp --------SSSC---HHHHHHHHHHTCSSGGGSTTTTTTHHHHHTSG
T ss_pred --------CCCC---HHHHHHHHHHcccCHHhCCCCCCCHHHHhCCc
Confidence 0111 2355677899999999999974 555543
No 198
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=7.4e-36 Score=356.61 Aligned_cols=257 Identities=22% Similarity=0.297 Sum_probs=205.5
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc--ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH--KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|...++||+|+||+||+|+.. +|+.||+|++..... ......+.+|++++++++||||+++++++...+..|+||
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 264 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM 264 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence 57888899999999999999875 689999999854432 234567889999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 896 RYMENGSLRDVLHSITP-PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
||+++|+|.+++..... ...+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~ 341 (543)
T 3c4z_A 265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA 341 (543)
T ss_dssp CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeeccC
Confidence 99999999999976432 345899999999999999999999 88999999999999999999999999999987654
Q ss_pred CCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 975 SPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 975 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
... ......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+............
T Consensus 342 ~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~-~~~~~~~~~i~~~~~~~p----- 413 (543)
T 3c4z_A 342 GQT--KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEK-VENKELKQRVLEQAVTYP----- 413 (543)
T ss_dssp TCC--CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCC-CCHHHHHHHHHHCCCCCC-----
T ss_pred CCc--ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccc-hhHHHHHHHHhhcccCCC-----
Confidence 322 123358999999999999999999999999999999999999999754221 111122221111110000
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCH-----HHHHHHh
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNM-----RDVVRQL 1097 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~-----~evl~~L 1097 (1109)
.....++.+++.+|++.||++||++ +|+++|-
T Consensus 414 -----------~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~Hp 450 (543)
T 3c4z_A 414 -----------DKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHP 450 (543)
T ss_dssp -----------TTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTSG
T ss_pred -----------cccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHcCc
Confidence 0112345567789999999999964 7787654
No 199
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.7e-36 Score=346.22 Aligned_cols=266 Identities=21% Similarity=0.255 Sum_probs=194.8
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEecCC------c
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKD------C 890 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~ 890 (1109)
++|...+.||+|+||.||+|.. .+|+.||||++.... .......+.+|++++++++||||+++++++...+ .
T Consensus 25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~ 104 (367)
T 1cm8_A 25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTD 104 (367)
T ss_dssp SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCC
T ss_pred ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCce
Confidence 5788899999999999999976 568999999984432 2223457889999999999999999999997653 4
Q ss_pred eeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 891 GIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 891 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
.|+||||+ +++|.++++.. .+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 105 ~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 176 (367)
T 1cm8_A 105 FYLVMPFM-GTDLGKLMKHE----KLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLAR 176 (367)
T ss_dssp CEEEEECC-SEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EEEEEecC-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeeeccc
Confidence 59999999 78999999762 3899999999999999999999 8899999999999999999999999999998
Q ss_pred ccCCCCCCceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccc
Q 001275 971 LLDKSPASTTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEIN 1049 (1109)
Q Consensus 971 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1109)
..... .....+|+.|+|||++.+ ..++.++||||+||++|||++|+.||..... ...+...............
T Consensus 177 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~l~~i~~~~g~~~~~~~ 250 (367)
T 1cm8_A 177 QADSE-----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDH-LDQLKEIMKVTGTPPAEFV 250 (367)
T ss_dssp ECCSS-----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHH
T ss_pred ccccc-----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHhcCCCCHHHH
Confidence 76432 223578999999998887 6789999999999999999999999965321 1111111111111110000
Q ss_pred cccchhhhHHh-----------hhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1050 DIVDLSLMEEM-----------LVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1050 ~~~d~~~~~~~-----------~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
..+........ ..........++.+++.+|++.||++|||++|+++|-.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~ 310 (367)
T 1cm8_A 251 QRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPY 310 (367)
T ss_dssp HTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGG
T ss_pred HHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcChH
Confidence 00000000000 00001122345677888999999999999999999754
No 200
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=2.4e-36 Score=336.79 Aligned_cols=255 Identities=20% Similarity=0.261 Sum_probs=199.4
Q ss_pred hCCCCCc-eeecccCeEEEEEEe---CCCcEEEEEEeeecccc-cChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeE
Q 001275 819 ENLNAKH-VIGRGAHGIVYKASL---GPNAVFAVKKLAFRGHK-RGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 819 ~~~~~~~-~lG~G~~g~Vy~~~~---~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 893 (1109)
++|.+.+ .||+|+||+||+|.. ..++.||||++...... .....+.+|++++++++||||+++++++ ..+..++
T Consensus 16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~l 94 (291)
T 1xbb_A 16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWML 94 (291)
T ss_dssp GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEE
T ss_pred hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEE
Confidence 5677777 899999999999954 34688999998544322 2356789999999999999999999999 5677899
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
||||+++|+|.+++.... .+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 95 v~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 168 (291)
T 1xbb_A 95 VMEMAELGPLNKYLQQNR---HVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALR 168 (291)
T ss_dssp EEECCTTEEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEeCCCCCHHHHHHhCc---CCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcceeec
Confidence 999999999999998743 4899999999999999999999 8899999999999999999999999999998775
Q ss_pred CCCCCc-eeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccc
Q 001275 974 KSPAST-TSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDI 1051 (1109)
Q Consensus 974 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1109)
...... ......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... .....+.. . ... ..
T Consensus 169 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~~~~---~-~~~-~~ 241 (291)
T 1xbb_A 169 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLEK---G-ERM-GC 241 (291)
T ss_dssp TTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHT---T-CCC-CC
T ss_pred cCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHHc---C-CCC-CC
Confidence 443221 1223456789999999998889999999999999999999 99998653221 11111111 0 000 00
Q ss_pred cchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1052 VDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1052 ~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
......++.+++.+||+.||++||++.|+++.|+++
T Consensus 242 -------------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 277 (291)
T 1xbb_A 242 -------------PAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 277 (291)
T ss_dssp -------------CTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred -------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 011223466788899999999999999999999875
No 201
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=1.1e-35 Score=333.65 Aligned_cols=251 Identities=23% Similarity=0.341 Sum_probs=205.8
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
+.|...+.||+|+||.||+|.. .+++.||+|++...........+.+|+.++++++||||+++++++...+..++||||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 101 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY 101 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEe
Confidence 5688899999999999999976 468999999997665556677899999999999999999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
+++++|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 102 ~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 174 (303)
T 3a7i_A 102 LGGGSALDLLEPG----PLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI 174 (303)
T ss_dssp CTTEEHHHHHTTS----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBC
T ss_pred CCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCcccc
Confidence 9999999998652 4899999999999999999999 88999999999999999999999999999987644321
Q ss_pred CceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchhhh
Q 001275 978 STTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLM 1057 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 1057 (1109)
......||+.|+|||++.+..++.++||||||+++|||++|+.||...... .....+... ..... .
T Consensus 175 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~--~~~~~----~---- 240 (303)
T 3a7i_A 175 --KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM--KVLFLIPKN--NPPTL----E---- 240 (303)
T ss_dssp --CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHS--CCCCC----C----
T ss_pred --ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH--HHHHHhhcC--CCCCC----c----
Confidence 223457899999999999999999999999999999999999998643211 111111110 00000 0
Q ss_pred HHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1058 EEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1058 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
......+.+++.+||+.||++||+++|++++..
T Consensus 241 --------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~ 273 (303)
T 3a7i_A 241 --------GNYSKPLKEFVEACLNKEPSFRPTAKELLKHKF 273 (303)
T ss_dssp --------SSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCHH
T ss_pred --------cccCHHHHHHHHHHcCCChhhCcCHHHHhhChh
Confidence 011234667888999999999999999998754
No 202
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.3e-36 Score=346.65 Aligned_cols=258 Identities=24% Similarity=0.285 Sum_probs=202.8
Q ss_pred hCCCCCceeecccCeEEEEEEe----CCCcEEEEEEeeecc---cccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCc
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL----GPNAVFAVKKLAFRG---HKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDC 890 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~----~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 890 (1109)
++|.+.++||+|+||+||+|+. .+++.||||++.... .......+.+|+++++++ +||||+++++++...+.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 5789999999999999999987 478999999985432 223345677899999999 69999999999999999
Q ss_pred eeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 891 GIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 891 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
.++||||+++|+|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 134 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~ 207 (355)
T 1vzo_A 134 LHLILDYINGGELFTHLSQRE---RFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSK 207 (355)
T ss_dssp EEEEECCCCSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEE
T ss_pred EEEEeecCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCCCCe
Confidence 999999999999999998643 4899999999999999999999 8899999999999999999999999999998
Q ss_pred ccCCCCCCceeeecccCccccccccccc--CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccc
Q 001275 971 LLDKSPASTTSISVVGTIGYIAPENAFT--TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEI 1048 (1109)
Q Consensus 971 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1109)
...... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... .....+...........
T Consensus 208 ~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~ 285 (355)
T 1vzo_A 208 EFVADE-TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEK-NSQAEISRRILKSEPPY 285 (355)
T ss_dssp ECCGGG-GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSC-CCHHHHHHHHHHCCCCC
T ss_pred ecccCC-CCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCcc-chHHHHHHHHhccCCCC
Confidence 664322 122234579999999999885 34689999999999999999999999643221 11222222211111000
Q ss_pred ccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHHhhhC
Q 001275 1049 NDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRP-----NMRDVVRQLVDA 1100 (1109)
Q Consensus 1049 ~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~evl~~L~~~ 1100 (1109)
.......+.+++.+||+.||++|| +++|+++|..-.
T Consensus 286 ----------------~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f~ 326 (355)
T 1vzo_A 286 ----------------PQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQ 326 (355)
T ss_dssp ----------------CTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGT
T ss_pred ----------------CcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcchh
Confidence 011123456688899999999999 999999987543
No 203
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=6.4e-36 Score=339.88 Aligned_cols=265 Identities=19% Similarity=0.253 Sum_probs=202.0
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCC-CCceeeEeeEEec--CCceeEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIR-HRNLVRLEDFWLR--KDCGIIM 894 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--~~~~~lv 894 (1109)
++|++.+.||+|+||+||+|.. .+++.||||++. ......+.+|++++++++ ||||+++++++.. ....++|
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~----~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv 111 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILK----PVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEC----SCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEec----ccchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence 6788899999999999999965 578999999984 234567899999999997 9999999999987 5678999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCC-cEEEecccCCcccC
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEM-EPHISDFGIAKLLD 973 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~-~~kl~DfGla~~~~ 973 (1109)
|||+++++|.+++.. +++..+..++.|+++||+||| +.+|+||||||+||+++.++ .+||+|||+++...
T Consensus 112 ~e~~~~~~l~~~~~~------~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~ 182 (330)
T 3nsz_A 112 FEHVNNTDFKQLYQT------LTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYH 182 (330)
T ss_dssp EECCCCCCHHHHGGG------CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECC
T ss_pred EeccCchhHHHHHHh------CCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcC
Confidence 999999999999864 788999999999999999999 88999999999999999776 89999999998765
Q ss_pred CCCCCceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCc-----cc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDT-----EE 1047 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~-----~~ 1047 (1109)
.... .....||..|+|||++.+ ..++.++||||+||++|||++|+.||.........+........... ..
T Consensus 183 ~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 259 (330)
T 3nsz_A 183 PGQE---YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDK 259 (330)
T ss_dssp TTCC---CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCCc---cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHH
Confidence 4332 223578999999999877 67899999999999999999999999655433322222221110000 00
Q ss_pred cccccchhhhH-----------H-hhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1048 INDIVDLSLME-----------E-MLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1048 ~~~~~d~~~~~-----------~-~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
.....++.... . ...........++.+++.+|++.||++|||++|+++|-+-
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~hp~f 323 (330)
T 3nsz_A 260 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 323 (330)
T ss_dssp TTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTSGGG
T ss_pred hccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcCccH
Confidence 00000000000 0 0000011123457778889999999999999999997553
No 204
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=1e-35 Score=330.52 Aligned_cols=248 Identities=21% Similarity=0.334 Sum_probs=202.3
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|...+.||+|+||.||+|... +++.||+|++.... .......+.+|++++++++||||+++++++...+..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 57888999999999999999775 57889999985432 2233567899999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+++|+|.+++.... .+++..+..++.|+++|++||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 94 e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~ 167 (284)
T 2vgo_A 94 EFAPRGELYKELQKHG---RFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL 167 (284)
T ss_dssp CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSS
T ss_pred EeCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCccc
Confidence 9999999999998654 3899999999999999999999 899999999999999999999999999999765432
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
. .....|++.|+|||++.+..++.++||||+|+++|+|++|+.||...... ..............
T Consensus 168 ~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-----~~~~~~~~~~~~~~------ 232 (284)
T 2vgo_A 168 R----RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT-----ETHRRIVNVDLKFP------ 232 (284)
T ss_dssp C----BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHHHHHTTCCCCC------
T ss_pred c----cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh-----HHHHHHhccccCCC------
Confidence 1 22357899999999999999999999999999999999999999653211 11111111100000
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
... ..++.+++.+|++.||++||+++|+++|-
T Consensus 233 -------~~~---~~~~~~li~~~l~~~p~~Rps~~~ll~h~ 264 (284)
T 2vgo_A 233 -------PFL---SDGSKDLISKLLRYHPPQRLPLKGVMEHP 264 (284)
T ss_dssp -------TTS---CHHHHHHHHHHSCSSGGGSCCHHHHHTCH
T ss_pred -------CcC---CHHHHHHHHHHhhcCHhhCCCHHHHhhCH
Confidence 011 23456688899999999999999999854
No 205
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=2.4e-36 Score=343.86 Aligned_cols=255 Identities=22% Similarity=0.275 Sum_probs=198.5
Q ss_pred HhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCceeEE
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 894 (1109)
..++|...+.||+|+||+||+|... +++.||+|++..... ...+|++++.++ +||||+++++++.+.+..|+|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv 94 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR-----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVV 94 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC-----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC-----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEE
Confidence 3467999999999999999999765 688999999854321 245788888888 799999999999999999999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCC----CcEEEecccCCc
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSE----MEPHISDFGIAK 970 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~----~~~kl~DfGla~ 970 (1109)
|||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||++..+ +.+||+|||+++
T Consensus 95 ~E~~~gg~L~~~i~~~~---~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~ 168 (342)
T 2qr7_A 95 TELMKGGELLDKILRQK---FFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAK 168 (342)
T ss_dssp ECCCCSCBHHHHHHTCT---TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCE
T ss_pred EeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcc
Confidence 99999999999997643 4899999999999999999999 8899999999999998443 359999999998
Q ss_pred ccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccc
Q 001275 971 LLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEIND 1050 (1109)
Q Consensus 971 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1109)
....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||...... ..................
T Consensus 169 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~~~~i~~~~~~~~~ 244 (342)
T 2qr7_A 169 QLRAENG--LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDD--TPEEILARIGSGKFSLSG 244 (342)
T ss_dssp ECBCTTC--CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTS--CHHHHHHHHHHCCCCCCS
T ss_pred cCcCCCC--ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcC--CHHHHHHHHccCCcccCc
Confidence 7644322 223457899999999998888999999999999999999999999753221 111222111111100000
Q ss_pred ccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1051 IVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1051 ~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
. . ......++.+++.+|++.||++||++.|+++|-+
T Consensus 245 ----~-----~---~~~~s~~~~~li~~~L~~dP~~R~t~~~il~hp~ 280 (342)
T 2qr7_A 245 ----G-----Y---WNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPW 280 (342)
T ss_dssp ----T-----T---TTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHH
T ss_pred ----c-----c---cccCCHHHHHHHHHHCCCChhHCcCHHHHhcCCe
Confidence 0 0 0111234556778999999999999999998754
No 206
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=8.4e-36 Score=333.26 Aligned_cols=261 Identities=16% Similarity=0.219 Sum_probs=198.4
Q ss_pred HHhhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEE-ecCCceeE
Q 001275 816 EATENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFW-LRKDCGII 893 (1109)
Q Consensus 816 ~~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~l 893 (1109)
...++|...+.||+|+||+||+|.. .+++.||||++..... ...+.+|++++++++|++++..++++ ...+..++
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l 82 (296)
T 4hgt_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK---HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM 82 (296)
T ss_dssp -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEE
T ss_pred ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc---chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEE
Confidence 3457899999999999999999976 6789999998644322 23578899999999888877666655 56677899
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee---CCCCcEEEecccCCc
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL---DSEMEPHISDFGIAK 970 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll---~~~~~~kl~DfGla~ 970 (1109)
||||+ +|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||+++
T Consensus 83 v~e~~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~ 156 (296)
T 4hgt_A 83 VMELL-GPSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK 156 (296)
T ss_dssp EEECC-CCBHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTTCE
T ss_pred EEEcc-CCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCccce
Confidence 99999 999999997533 24899999999999999999999 8899999999999999 788999999999998
Q ss_pred ccCCCCCC-----ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccc-cHH-HHHHHhhc
Q 001275 971 LLDKSPAS-----TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERT-DIV-GWVRSVWS 1043 (1109)
Q Consensus 971 ~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~-~~~-~~~~~~~~ 1043 (1109)
........ .......||+.|+|||.+.+..++.++||||+||++|||++|+.||........ ... ........
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 236 (296)
T 4hgt_A 157 KYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMS 236 (296)
T ss_dssp ECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHH
T ss_pred eccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhccccc
Confidence 76543221 122346799999999999999999999999999999999999999965322111 111 11000000
Q ss_pred CccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1044 DTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1044 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.. .... ......++.+++.+||+.||++||+++|+++.|+++
T Consensus 237 ~~------------~~~~---~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~ 278 (296)
T 4hgt_A 237 TP------------IEVL---CKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL 278 (296)
T ss_dssp SC------------HHHH---TTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHH
T ss_pred ch------------hhhh---hccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 00 0000 011134577788899999999999999999999875
No 207
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=5.5e-36 Score=352.74 Aligned_cols=201 Identities=26% Similarity=0.370 Sum_probs=166.6
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEecC-----Cc
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK-----DC 890 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 890 (1109)
.++|.+.++||+|+||+||+|... +++.||||++.... .....+++.+|++++++++||||+++++++... +.
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 468999999999999999999764 57899999985432 223356789999999999999999999998766 56
Q ss_pred eeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 891 GIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 891 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
.|+||||++ |+|.++++... .+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+|+
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~~---~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGla~ 177 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTPI---FLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLAR 177 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSSC---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EEEEEecCC-cCHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCCcc
Confidence 899999987 59999997643 4899999999999999999999 8899999999999999999999999999998
Q ss_pred ccCCCCCC--------------------ceeeecccCccccccccc-ccCCCCccCcchhhHHHHHHHHhCCCCCC
Q 001275 971 LLDKSPAS--------------------TTSISVVGTIGYIAPENA-FTTAKSKESDVYSYGVVLLELITRKKALD 1025 (1109)
Q Consensus 971 ~~~~~~~~--------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~sDvwSlGvil~elltg~~p~~ 1025 (1109)
........ ......+||+.|+|||++ ....++.++||||+||++|||++|..||.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 178 TINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp EC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred cccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence 76543211 123456899999999986 56678999999999999999998655543
No 208
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=9.6e-36 Score=329.21 Aligned_cols=250 Identities=23% Similarity=0.307 Sum_probs=195.2
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|.+.+.||+|+||.||+|... +++.||||++.... .......+.+|++++++++||||+++++++...+..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM 90 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence 57888999999999999999875 78999999985432 2334567899999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+++++|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 91 e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~ 164 (276)
T 2h6d_A 91 EYVSGGELFDYICKHG---RVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 164 (276)
T ss_dssp ECCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-
T ss_pred eccCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCEEEeecccccccCCC
Confidence 9999999999997643 3899999999999999999999 889999999999999999999999999999876443
Q ss_pred CCCceeeecccCcccccccccccCCC-CccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccch
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAK-SKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDL 1054 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 1054 (1109)
.. .....||+.|+|||.+.+..+ +.++||||+|+++|+|++|+.||..... ...............
T Consensus 165 ~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~----- 231 (276)
T 2h6d_A 165 EF---LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHV-----PTLFKKIRGGVFYIP----- 231 (276)
T ss_dssp ---------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHCCCCCC-----
T ss_pred cc---eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcH-----HHHHHHhhcCcccCc-----
Confidence 21 223578999999999988766 6899999999999999999999864321 111111111100000
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1055 SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
. ....++.+++.+|++.||++||+++|+++|-.
T Consensus 232 --------~---~~~~~l~~li~~~l~~~p~~Rps~~~~l~h~~ 264 (276)
T 2h6d_A 232 --------E---YLNRSVATLLMHMLQVDPLKRATIKDIREHEW 264 (276)
T ss_dssp --------T---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHH
T ss_pred --------h---hcCHHHHHHHHHHccCChhhCCCHHHHHhChh
Confidence 0 11234566888999999999999999999743
No 209
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=5.4e-36 Score=333.82 Aligned_cols=250 Identities=25% Similarity=0.380 Sum_probs=196.6
Q ss_pred CCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEec----CCceeE
Q 001275 820 NLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLR----KDCGII 893 (1109)
Q Consensus 820 ~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~l 893 (1109)
.|...+.||+|+||+||+|.. .++..||+|++.... .......+.+|+.++++++||||+++++++.. ....++
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 106 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL 106 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence 467778899999999999976 467889999986443 23345678999999999999999999999865 345799
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eEEeccCCCCeeeC-CCCcEEEecccCCc
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPP--IVHRDIKPENILLD-SEMEPHISDFGIAK 970 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~NIll~-~~~~~kl~DfGla~ 970 (1109)
||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+ |+||||||+||+++ .++.+||+|||++.
T Consensus 107 v~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~ 180 (290)
T 1t4h_A 107 VTELMTSGTLKTYLKRFK---VMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT 180 (290)
T ss_dssp EEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred EEEecCCCCHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHH---cCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcc
Confidence 999999999999998643 3889999999999999999999 777 99999999999997 78999999999997
Q ss_pred ccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccc
Q 001275 971 LLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEIND 1050 (1109)
Q Consensus 971 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1109)
..... ......||+.|+|||++. +.++.++||||+|+++|+|++|+.||...... ............
T Consensus 181 ~~~~~----~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~----~~~~~~~~~~~~---- 247 (290)
T 1t4h_A 181 LKRAS----FAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNA----AQIYRRVTSGVK---- 247 (290)
T ss_dssp GCCTT----SBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH----HHHHHHHTTTCC----
T ss_pred ccccc----ccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcH----HHHHHHHhccCC----
Confidence 55332 223457999999999776 45899999999999999999999999643221 112211111100
Q ss_pred ccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1051 IVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1051 ~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
+... ......++.+++.+||+.||++||+++|+++|-+
T Consensus 248 ---~~~~-------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~ 285 (290)
T 1t4h_A 248 ---PASF-------DKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAF 285 (290)
T ss_dssp ---CGGG-------GGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred ---cccc-------CCCCCHHHHHHHHHHccCChhhCCCHHHHhhCcc
Confidence 0000 0011234677888999999999999999998743
No 210
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=330.63 Aligned_cols=256 Identities=26% Similarity=0.348 Sum_probs=198.9
Q ss_pred CCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEec
Q 001275 820 NLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRYM 898 (1109)
Q Consensus 820 ~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 898 (1109)
+|....+||+|+||+||+|.. .+++.||||.+... .......+.+|+.++++++||||+++++++...+..++||||+
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 101 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPER-DSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV 101 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECC-CC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCC-chHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence 455566899999999999976 56889999998543 3444567899999999999999999999999999999999999
Q ss_pred cCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCC-CCcEEEecccCCcccCCCCC
Q 001275 899 ENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDS-EMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 899 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~-~~~~kl~DfGla~~~~~~~~ 977 (1109)
++++|.+++.........++..+..++.|+++||+||| +.+|+||||||+||+++. ++.+||+|||+++.......
T Consensus 102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~ 178 (295)
T 2clq_A 102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINP 178 (295)
T ss_dssp SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC---
T ss_pred CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCC
Confidence 99999999987655556789999999999999999999 889999999999999987 89999999999987643221
Q ss_pred CceeeecccCcccccccccccCC--CCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 978 STTSISVVGTIGYIAPENAFTTA--KSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~~~--~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
......||+.|+|||++.+.. ++.++||||||+++|||++|+.||........... ...........
T Consensus 179 --~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~--~~~~~~~~~~~------- 247 (295)
T 2clq_A 179 --CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMF--KVGMFKVHPEI------- 247 (295)
T ss_dssp ----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHH--HHHHHCCCCCC-------
T ss_pred --cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHH--hhccccccccc-------
Confidence 123357899999999987654 78999999999999999999999853211111100 00000000000
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
......++.+++.+||+.||++||+++|++++-.-
T Consensus 248 ---------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~~~~ 282 (295)
T 2clq_A 248 ---------PESMSAEAKAFILKCFEPDPDKRACANDLLVDEFL 282 (295)
T ss_dssp ---------CTTSCHHHHHHHHHTTCSSTTTSCCHHHHHTSGGG
T ss_pred ---------cccCCHHHHHHHHHHccCChhhCCCHHHHhcChhh
Confidence 01112345668889999999999999999987544
No 211
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=348.92 Aligned_cols=261 Identities=17% Similarity=0.156 Sum_probs=201.5
Q ss_pred hCCCCCceeecccCeEEEEEEeCC---------CcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceee---------
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGP---------NAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVR--------- 880 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------- 880 (1109)
++|.+.+.||+|+||+||+|.... ++.||+|++... ..+.+|++++++++||||++
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~------~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD------GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT------STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc------chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 578889999999999999997764 789999998432 36789999999999999987
Q ss_pred ------EeeEEec-CCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCe
Q 001275 881 ------LEDFWLR-KDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENI 953 (1109)
Q Consensus 881 ------l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NI 953 (1109)
+++++.. .+..++||||+ +|+|.+++.... ...+++..++.++.|++.||+||| +.+|+||||||+||
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NI 190 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSP-KHVLSERSVLQVACRLLDALEFLH---ENEYVHGNVTAENI 190 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCGGGE
T ss_pred ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCC-cCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHE
Confidence 6777765 67789999999 999999998642 235899999999999999999999 88999999999999
Q ss_pred eeCCCC--cEEEecccCCcccCCCCCC-----ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCC
Q 001275 954 LLDSEM--EPHISDFGIAKLLDKSPAS-----TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDP 1026 (1109)
Q Consensus 954 ll~~~~--~~kl~DfGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~ 1026 (1109)
+++.++ .+||+|||+++.+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 191 l~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~ 270 (352)
T 2jii_A 191 FVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTN 270 (352)
T ss_dssp EEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGG
T ss_pred EEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence 999998 8999999999876432211 112335799999999999999999999999999999999999999965
Q ss_pred CccccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1027 SYKERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.......+............ .+.+.... ......++.+++.+||+.||++||+++|+++.|+++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 334 (352)
T 2jii_A 271 CLPNTEDIMKQKQKFVDKPG---PFVGPCGH-------WIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEAL 334 (352)
T ss_dssp GTTCHHHHHHHHHHHHHSCC---CEECTTSC-------EECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhccCChh---hhhhhccc-------cCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHH
Confidence 43222222222222111111 11110000 001124466788899999999999999999999875
No 212
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=1.3e-35 Score=331.36 Aligned_cols=251 Identities=21% Similarity=0.291 Sum_probs=203.3
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc--ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH--KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|...+.||+|+||+||+|... +++.||+|.+..... ......+.+|++++++++||||+++++++...+..++||
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 94 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 94 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence 57888999999999999999775 578899998854432 233457889999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+++++|.+++.... .+++..+..++.|+++|++||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 95 e~~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 168 (294)
T 2rku_A 95 ELCRRRSLLELHKRRK---ALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 168 (294)
T ss_dssp ECCTTCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred ecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceecccC
Confidence 9999999999987643 4899999999999999999999 889999999999999999999999999999876433
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
.. ......||+.|+|||.+.+..++.++||||+|+++|+|++|+.||...... ...............
T Consensus 169 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~----- 236 (294)
T 2rku_A 169 GE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK-----ETYLRIKKNEYSIPK----- 236 (294)
T ss_dssp TC--CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHHHHHTTCCCCCT-----
T ss_pred cc--ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-----HHHHHHhhccCCCcc-----
Confidence 22 223357899999999999988999999999999999999999999653211 111111111100000
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.....+.+++.+|++.||++||+++|++++-.
T Consensus 237 -----------~~~~~~~~li~~~l~~~p~~Rps~~~ll~~~~ 268 (294)
T 2rku_A 237 -----------HINPVAASLIQKMLQTDPTARPTINELLNDEF 268 (294)
T ss_dssp -----------TSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHH
T ss_pred -----------ccCHHHHHHHHHHcccChhhCcCHHHHhhChh
Confidence 11134566788999999999999999998754
No 213
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=6.1e-36 Score=344.69 Aligned_cols=279 Identities=20% Similarity=0.227 Sum_probs=200.9
Q ss_pred cHHHHHHHhhCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccC----------hHHHHHHHHHHhcCCCCcee
Q 001275 810 LLKQVIEATENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRG----------SLSMKREIQTIGKIRHRNLV 879 (1109)
Q Consensus 810 ~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~----------~~~~~~E~~~l~~l~h~niv 879 (1109)
.++++....++|...+.||+|+||.||+|...+++.||||++........ .+.+.+|++++++++||||+
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 35567777899999999999999999999988899999999855433221 26789999999999999999
Q ss_pred eEeeEEecC-----CceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCee
Q 001275 880 RLEDFWLRK-----DCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENIL 954 (1109)
Q Consensus 880 ~l~~~~~~~-----~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIl 954 (1109)
++++++... ...++||||++ |+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl 166 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR--IVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNIL 166 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEE
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHHEE
Confidence 999998543 35799999998 68888887532 35899999999999999999999 889999999999999
Q ss_pred eCCCCcEEEecccCCcccCCCCCCceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCcccccc
Q 001275 955 LDSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTD 1033 (1109)
Q Consensus 955 l~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~ 1033 (1109)
++.++.+||+|||+++...... ......||+.|+|||++.+ ..++.++||||+||++|+|++|+.||...... ..
T Consensus 167 ~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~~ 242 (362)
T 3pg1_A 167 LADNNDITICDFNLAREDTADA---NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFY-NQ 242 (362)
T ss_dssp ECTTCCEEECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HH
T ss_pred EcCCCCEEEEecCccccccccc---ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHH-HH
Confidence 9999999999999998543322 2234578999999998877 67899999999999999999999999754211 11
Q ss_pred HHHHHHHhhcCccc-cccccchhhhHH-----------hhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1034 IVGWVRSVWSDTEE-INDIVDLSLMEE-----------MLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1034 ~~~~~~~~~~~~~~-~~~~~d~~~~~~-----------~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.............. ......+..... ............+.+++.+|++.||++|||++|+++|-+
T Consensus 243 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~ 319 (362)
T 3pg1_A 243 LNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRHPY 319 (362)
T ss_dssp HHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGG
T ss_pred HHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcCch
Confidence 11111111100000 000000000000 000001112345677888999999999999999999854
No 214
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=1.2e-35 Score=331.95 Aligned_cols=259 Identities=16% Similarity=0.223 Sum_probs=201.2
Q ss_pred hhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEE-ecCCceeEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFW-LRKDCGIIMY 895 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lv~ 895 (1109)
.++|+..+.||+|+||+||+|+. .+++.||||++.... ....+.+|++++++++|++++..+.++ ...+..++||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT---KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS---SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc---chhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEE
Confidence 46788999999999999999976 678999999885432 234688999999999988866666555 5566779999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeC---CCCcEEEecccCCccc
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLD---SEMEPHISDFGIAKLL 972 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~---~~~~~kl~DfGla~~~ 972 (1109)
||+ +++|.+++.... ..+++..++.++.|+++||+||| +.+|+||||||+||+++ .++.+||+|||+++..
T Consensus 85 e~~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~ 158 (296)
T 3uzp_A 85 ELL-GPSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKY 158 (296)
T ss_dssp ECC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEEC
T ss_pred Eec-CCCHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccc
Confidence 999 899999997533 34899999999999999999999 88999999999999994 7889999999999876
Q ss_pred CCCCCC-----ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCcccc-ccHHHHH-HHhhcCc
Q 001275 973 DKSPAS-----TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKER-TDIVGWV-RSVWSDT 1045 (1109)
Q Consensus 973 ~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~-~~~~~~~-~~~~~~~ 1045 (1109)
...... .......||+.|+|||.+.+..++.++|||||||++|||++|+.||....... ......+ .......
T Consensus 159 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 238 (296)
T 3uzp_A 159 RDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP 238 (296)
T ss_dssp BCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSC
T ss_pred cccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCc
Confidence 543321 11234579999999999999999999999999999999999999997532211 1111111 1000000
Q ss_pred cccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1046 EEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1046 ~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.... ......++.+++.+||+.||++||+++|+++.|+++
T Consensus 239 ------------~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~ 278 (296)
T 3uzp_A 239 ------------IEVL---CKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL 278 (296)
T ss_dssp ------------HHHH---TTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHH
T ss_pred ------------hHHH---HhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHH
Confidence 0000 011224577788899999999999999999999875
No 215
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=2.7e-36 Score=335.02 Aligned_cols=249 Identities=23% Similarity=0.427 Sum_probs=201.4
Q ss_pred HhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEec--------
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLR-------- 887 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-------- 887 (1109)
...+|+..+.||+|+||.||+|... +++.||+|++.... ..+.+|++++++++||||+++++++..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~ 83 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETS 83 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS-----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC----
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc-----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccc
Confidence 3467899999999999999999875 78999999985432 357789999999999999999998864
Q ss_pred --------CCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCC
Q 001275 888 --------KDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEM 959 (1109)
Q Consensus 888 --------~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~ 959 (1109)
....++||||+++|+|.+++.... ...+++..++.++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 84 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~ 159 (284)
T 2a19_B 84 SKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRR-GEKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTK 159 (284)
T ss_dssp -----CCEEEEEEEEECCCCSCBHHHHHHHGG-GSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETT
T ss_pred cccccccCcceEEEEEeccCCCCHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEEcCCC
Confidence 345799999999999999997643 235899999999999999999999 88999999999999999999
Q ss_pred cEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHH
Q 001275 960 EPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVR 1039 (1109)
Q Consensus 960 ~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~ 1039 (1109)
.+||+|||++........ .....||+.|+|||.+.+..++.++||||+|+++|||++|..|+... . ....
T Consensus 160 ~~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~----~---~~~~ 229 (284)
T 2a19_B 160 QVKIGDFGLVTSLKNDGK---RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET----S---KFFT 229 (284)
T ss_dssp EEEECCCTTCEESSCCSC---CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH----H---HHHH
T ss_pred CEEECcchhheecccccc---ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH----H---HHHH
Confidence 999999999987654322 22357999999999999999999999999999999999999876311 0 1111
Q ss_pred HhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCC
Q 001275 1040 SVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASV 1102 (1109)
Q Consensus 1040 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 1102 (1109)
..... .... .. ..++.+++.+||+.||++||++.|++++|+.+..
T Consensus 230 ~~~~~--~~~~-------------~~---~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~ 274 (284)
T 2a19_B 230 DLRDG--IISD-------------IF---DKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKK 274 (284)
T ss_dssp HHHTT--CCCT-------------TS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC
T ss_pred Hhhcc--cccc-------------cC---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhh
Confidence 11000 0000 11 1235567889999999999999999999988744
No 216
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=5.3e-36 Score=356.37 Aligned_cols=195 Identities=24% Similarity=0.362 Sum_probs=153.6
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEecC-----Cce
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK-----DCG 891 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~ 891 (1109)
++|.+.++||+|+||+||+|... +++.||||++.... .....+++.+|++++++++|||||++++++... ...
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 132 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL 132 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence 67899999999999999999664 68999999985432 223356788999999999999999999998543 468
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKL 971 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~ 971 (1109)
|+||||++ |+|.+++.... .+++..+..++.||++||+||| +.+|+||||||+|||++.++.+||+|||+|+.
T Consensus 133 ~lv~e~~~-~~L~~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~ 205 (458)
T 3rp9_A 133 YVVLEIAD-SDFKKLFRTPV---YLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLART 205 (458)
T ss_dssp EEEECCCS-EEHHHHHHSSC---CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEeccc-cchhhhcccCC---CCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeecccccchh
Confidence 99999985 69999987643 4899999999999999999999 88999999999999999999999999999987
Q ss_pred cCCCCCC-------------------------ceeeecccCccccccccc-ccCCCCccCcchhhHHHHHHHHhC
Q 001275 972 LDKSPAS-------------------------TTSISVVGTIGYIAPENA-FTTAKSKESDVYSYGVVLLELITR 1020 (1109)
Q Consensus 972 ~~~~~~~-------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~sDvwSlGvil~elltg 1020 (1109)
....... ......+||+.|+|||++ .+..++.++||||+||++|||++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 206 VDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp TTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred ccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 6432211 123446789999999976 466799999999999999999994
No 217
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=7.3e-36 Score=344.06 Aligned_cols=272 Identities=23% Similarity=0.303 Sum_probs=202.9
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecC-----Cce
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK-----DCG 891 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~ 891 (1109)
..+|+..+.||+|+||+||+|... +++.||||++...........+.+|++++++++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 467899999999999999999764 68889999986544444557789999999999999999999998765 357
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKL 971 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~ 971 (1109)
++|+||++ |+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 106 ~iv~e~~~-~~L~~~l~~~----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~ 177 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLKTQ----HLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARV 177 (364)
T ss_dssp EEEEECCS-EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEcccC-cCHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcceEe
Confidence 99999998 5999998763 3899999999999999999999 88999999999999999999999999999987
Q ss_pred cCCCCCCc-eeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCc-ccc
Q 001275 972 LDKSPAST-TSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDT-EEI 1048 (1109)
Q Consensus 972 ~~~~~~~~-~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~-~~~ 1048 (1109)
........ ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ..+........... +..
T Consensus 178 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~ 256 (364)
T 3qyz_A 178 ADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYL-DQLNHILGILGSPSQEDL 256 (364)
T ss_dssp CCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGG-GHHHHHHHHHCSCCHHHH
T ss_pred cCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChH-HHHHHHHHHhCCCCHHHH
Confidence 65332211 1234579999999998665 45899999999999999999999999654221 11222211111110 000
Q ss_pred ccccchhhhHHh----------hhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1049 NDIVDLSLMEEM----------LVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1049 ~~~~d~~~~~~~----------~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
....+....... ..........++.+++.+|++.||++|||++|+++|-+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~ 316 (364)
T 3qyz_A 257 NCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPY 316 (364)
T ss_dssp HTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSGG
T ss_pred HHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcc
Confidence 000000000000 00000112345677888999999999999999999765
No 218
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=9.4e-37 Score=337.89 Aligned_cols=259 Identities=22% Similarity=0.354 Sum_probs=202.7
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEec--CCceeE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLR--KDCGII 893 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~l 893 (1109)
.++|+..+.||+|+||+||+|... +++.||+|++..... ......+.+|++++++++||||+++++++.. ....++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 367889999999999999999775 689999999865432 3345678999999999999999999998754 567899
Q ss_pred EEEeccCCCHHHHHhccC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC-----eEEeccCCCCeeeCCCCcEEEeccc
Q 001275 894 MYRYMENGSLRDVLHSIT-PPPTLEWNVRYKIALGAAHALAYLHYDCDPP-----IVHRDIKPENILLDSEMEPHISDFG 967 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~-----ivH~Dlk~~NIll~~~~~~kl~DfG 967 (1109)
||||+++|+|.+++.... ....+++..++.++.|++.||+||| +.+ |+||||||+||+++.++.+||+|||
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg 161 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECH---RRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFG 161 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHC------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHh---cccCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence 999999999999997643 2345899999999999999999999 666 9999999999999999999999999
Q ss_pred CCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccc
Q 001275 968 IAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEE 1047 (1109)
Q Consensus 968 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1109)
+++...... .......||+.|+|||.+.+..++.++||||+|+++|+|++|+.||..... .+....+....
T Consensus 162 ~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~i~~~~----- 232 (279)
T 2w5a_A 162 LARILNHDT--SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ--KELAGKIREGK----- 232 (279)
T ss_dssp HHHHC---C--HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTC-----
T ss_pred hheeecccc--ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH--HHHHHHHhhcc-----
Confidence 998764322 112235789999999999999999999999999999999999999865421 11111111100
Q ss_pred cccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCC
Q 001275 1048 INDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDAS 1101 (1109)
Q Consensus 1048 ~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 1101 (1109)
...+ . .....++.+++.+||+.||++||+++|++++++...
T Consensus 233 ~~~~-~------------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~ 273 (279)
T 2w5a_A 233 FRRI-P------------YRYSDELNEIITRMLNLKDYHRPSVEEILENPLILE 273 (279)
T ss_dssp CCCC-C------------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCG
T ss_pred cccC-C------------cccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhh
Confidence 0000 0 011234667888999999999999999999987653
No 219
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=3.3e-36 Score=335.09 Aligned_cols=251 Identities=19% Similarity=0.251 Sum_probs=198.5
Q ss_pred HhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc-cccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCceeE
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 893 (1109)
..++|+..+.||+|+||+||+|... +++.||+|++.... .......+.+|+..+.++ +||||+++++++.+.+..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 3467999999999999999999775 78999999986432 233456788999999999 99999999999999999999
Q ss_pred EEEeccCCCHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCC--------------
Q 001275 894 MYRYMENGSLRDVLHSITP-PPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSE-------------- 958 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~-------------- 958 (1109)
||||+++|+|.+++..... ...+++..++.++.|+++||+||| +.+|+||||||+||+++.+
T Consensus 89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~ 165 (289)
T 1x8b_A 89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDD 165 (289)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC----------------
T ss_pred EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCccccccccccc
Confidence 9999999999999976421 235899999999999999999999 8899999999999999844
Q ss_pred -----CcEEEecccCCcccCCCCCCceeeecccCcccccccccccC-CCCccCcchhhHHHHHHHHhCCCCCCCCccccc
Q 001275 959 -----MEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTT-AKSKESDVYSYGVVLLELITRKKALDPSYKERT 1032 (1109)
Q Consensus 959 -----~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~ 1032 (1109)
..+||+|||.+....... ...||+.|+|||.+.+. .++.++||||+||++|||++|+.++....
T Consensus 166 ~~~~~~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~---- 235 (289)
T 1x8b_A 166 WASNKVMFKIGDLGHVTRISSPQ------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD---- 235 (289)
T ss_dssp ----CCCEEECCCTTCEETTCSC------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH----
T ss_pred ccCCceEEEEcccccccccCCcc------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchh----
Confidence 479999999998765432 23589999999998766 56789999999999999999987753221
Q ss_pred cHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1033 DIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
...... . ....... .....++.+++.+||+.||++||+++|+++|-+-
T Consensus 236 ~~~~~~-~--~~~~~~~----------------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~ 283 (289)
T 1x8b_A 236 QWHEIR-Q--GRLPRIP----------------QVLSQEFTELLKVMIHPDPERRPSAMALVKHSVL 283 (289)
T ss_dssp HHHHHH-T--TCCCCCS----------------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHTCTTC
T ss_pred HHHHHH-c--CCCCCCC----------------cccCHHHHHHHHHHhCCCcccCCCHHHHhhChHh
Confidence 111110 0 0000000 0112346668889999999999999999987543
No 220
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=1.2e-35 Score=333.56 Aligned_cols=253 Identities=24% Similarity=0.330 Sum_probs=200.6
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
.++|...+.||+|+||+||+|+.. +++.||+|++... .......+.+|++++++++||||+++++++...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKS-PAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQ 86 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC-------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecc-cccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEE
Confidence 467889999999999999999775 6899999998543 22334578899999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee---CCCCcEEEecccCCcccC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL---DSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll---~~~~~~kl~DfGla~~~~ 973 (1109)
|+++|+|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||++ +.++.+||+|||+++...
T Consensus 87 ~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~ 160 (304)
T 2jam_A 87 LVSGGELFDRILERG---VYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ 160 (304)
T ss_dssp CCCSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCC
T ss_pred cCCCccHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcceecC
Confidence 999999999987643 3899999999999999999999 8899999999999999 788999999999997553
Q ss_pred CCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVD 1053 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1053 (1109)
... .....||+.|+|||.+.+..++.++||||+|+++|||++|+.||..... ......+.. .......
T Consensus 161 ~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~i~~---~~~~~~~--- 228 (304)
T 2jam_A 161 NGI----MSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETE--SKLFEKIKE---GYYEFES--- 228 (304)
T ss_dssp CBT----THHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHH---CCCCCCT---
T ss_pred CCc----cccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHc---CCCCCCc---
Confidence 321 1234689999999999999999999999999999999999999865321 111111111 1000000
Q ss_pred hhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1054 LSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
. . ......++.+++.+|++.||++||+++|+++|-+
T Consensus 229 -~-----~---~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~ 264 (304)
T 2jam_A 229 -P-----F---WDDISESAKDFICHLLEKDPNERYTCEKALSHPW 264 (304)
T ss_dssp -T-----T---TTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHH
T ss_pred -c-----c---cccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcc
Confidence 0 0 0111234667888999999999999999998653
No 221
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=6.3e-37 Score=354.58 Aligned_cols=243 Identities=16% Similarity=0.178 Sum_probs=187.3
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc--cccChHHHHHHH---HHHhcCCCCceeeEe-------eEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG--HKRGSLSMKREI---QTIGKIRHRNLVRLE-------DFW 885 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~~E~---~~l~~l~h~niv~l~-------~~~ 885 (1109)
++|...+.||+|+||+||+|.. .+++.||||++.... .....+.+.+|+ +.+++++|||||+++ +++
T Consensus 73 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~ 152 (377)
T 3byv_A 73 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 152 (377)
T ss_dssp EEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEE
T ss_pred ceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhh
Confidence 5677889999999999999986 568999999986432 223456788999 555566899999998 666
Q ss_pred ecCC-----------------ceeEEEEeccCCCHHHHHhccCCC----CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeE
Q 001275 886 LRKD-----------------CGIIMYRYMENGSLRDVLHSITPP----PTLEWNVRYKIALGAAHALAYLHYDCDPPIV 944 (1109)
Q Consensus 886 ~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~~~----~~l~~~~~~~i~~~i~~~L~~LH~~~~~~iv 944 (1109)
...+ ..++||||+ +|+|.+++...... ..+++..++.++.|+++||+||| +.+|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~iv 228 (377)
T 3byv_A 153 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLV 228 (377)
T ss_dssp ECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred hccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCee
Confidence 5543 278999999 68999999764321 12446888899999999999999 88999
Q ss_pred EeccCCCCeeeCCCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccC-----------CCCccCcchhhHHH
Q 001275 945 HRDIKPENILLDSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTT-----------AKSKESDVYSYGVV 1013 (1109)
Q Consensus 945 H~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~sDvwSlGvi 1013 (1109)
||||||+||+++.++.+||+|||+++.... ......| +.|+|||++.+. .++.++|||||||+
T Consensus 229 HrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~i 302 (377)
T 3byv_A 229 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLV 302 (377)
T ss_dssp CSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHH
T ss_pred cCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHH
Confidence 999999999999999999999999985422 2334567 999999999887 89999999999999
Q ss_pred HHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHH
Q 001275 1014 LLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDV 1093 (1109)
Q Consensus 1014 l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ev 1093 (1109)
+|||++|+.||........ ...+... ......++.+++.+||+.||++||++.|+
T Consensus 303 l~elltg~~Pf~~~~~~~~---------------~~~~~~~----------~~~~~~~~~~li~~~L~~dp~~Rpt~~e~ 357 (377)
T 3byv_A 303 IYWIWCADLPITKDAALGG---------------SEWIFRS----------CKNIPQPVRALLEGFLRYPKEDRLLPLQA 357 (377)
T ss_dssp HHHHHHSSCCC------CC---------------SGGGGSS----------CCCCCHHHHHHHHHHTCSSGGGCCCHHHH
T ss_pred HHHHHHCCCCCcccccccc---------------hhhhhhh----------ccCCCHHHHHHHHHHcCCCchhCCCHHHH
Confidence 9999999999864321110 0000000 00112346668889999999999999999
Q ss_pred HHH
Q 001275 1094 VRQ 1096 (1109)
Q Consensus 1094 l~~ 1096 (1109)
++|
T Consensus 358 l~h 360 (377)
T 3byv_A 358 MET 360 (377)
T ss_dssp HTS
T ss_pred hhC
Confidence 975
No 222
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=1.7e-36 Score=340.12 Aligned_cols=267 Identities=22% Similarity=0.363 Sum_probs=185.9
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
.++|.+.+.||+|+||+||+|... +++.||||++..........++.+|++++++++||||+++++++...+..++|||
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 93 (303)
T 2vwi_A 14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMK 93 (303)
T ss_dssp CCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEE
T ss_pred hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEeh
Confidence 367899999999999999999754 6899999988655445556678899999999999999999999999999999999
Q ss_pred eccCCCHHHHHhcc-----CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcc
Q 001275 897 YMENGSLRDVLHSI-----TPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKL 971 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~-----~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~ 971 (1109)
|+++|+|.+++... .....+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++..
T Consensus 94 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~ 170 (303)
T 2vwi_A 94 LLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSAF 170 (303)
T ss_dssp CCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHHHHH
T ss_pred hccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccchhe
Confidence 99999999998642 12345899999999999999999999 88999999999999999999999999999986
Q ss_pred cCCCCC---CceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccc
Q 001275 972 LDKSPA---STTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEE 1047 (1109)
Q Consensus 972 ~~~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1109)
...... ........||+.|+|||++.+ ..++.++||||+|+++|||++|+.||....... .. ..........
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~---~~~~~~~~~~ 246 (303)
T 2vwi_A 171 LATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMK-VL---MLTLQNDPPS 246 (303)
T ss_dssp CC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGG-HH---HHHHTSSCCC
T ss_pred eccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhh-HH---HHHhccCCCc
Confidence 643321 111234579999999998876 568999999999999999999999996542221 11 1111111100
Q ss_pred cccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1048 INDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1048 ~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.... ....... .....++.+++.+||+.||++||+++|+++|-.
T Consensus 247 ~~~~----~~~~~~~---~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~ 290 (303)
T 2vwi_A 247 LETG----VQDKEML---KKYGKSFRKMISLCLQKDPEKRPTAAELLRHKF 290 (303)
T ss_dssp TTC---------CCC---CCCCHHHHHHHHHHCCSSGGGSCCHHHHHTSTT
T ss_pred cccc----cccchhh---hhhhHHHHHHHHHHccCChhhCcCHHHHhhChh
Confidence 0000 0000000 111234667888999999999999999998743
No 223
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=4.3e-36 Score=349.16 Aligned_cols=264 Identities=25% Similarity=0.330 Sum_probs=195.0
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCc------ee
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDC------GI 892 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------~~ 892 (1109)
.+|...++||+|+||+||+|+...+..||+|++..... ...+|++++++++||||+++++++...+. .+
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~-----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR-----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT-----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc-----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 46888999999999999999998777899998854322 22379999999999999999999865443 78
Q ss_pred EEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeC-CCCcEEEecccCCcc
Q 001275 893 IMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLD-SEMEPHISDFGIAKL 971 (1109)
Q Consensus 893 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~-~~~~~kl~DfGla~~ 971 (1109)
+||||++++.+....+.......+++..+..++.|+++||+||| +.+|+||||||+||+++ .++.+||+|||+|+.
T Consensus 115 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~ 191 (394)
T 4e7w_A 115 LVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKI 191 (394)
T ss_dssp EEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCCccc
Confidence 99999987544443332223345899999999999999999999 88999999999999998 799999999999987
Q ss_pred cCCCCCCceeeecccCcccccccccccC-CCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccc---
Q 001275 972 LDKSPASTTSISVVGTIGYIAPENAFTT-AKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEE--- 1047 (1109)
Q Consensus 972 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~--- 1047 (1109)
...... .....||+.|+|||++.+. .++.++||||+||++|||++|+.||..... ...+...+.........
T Consensus 192 ~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~-~~~l~~i~~~~g~p~~~~~~ 267 (394)
T 4e7w_A 192 LIAGEP---NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESG-IDQLVEIIKVLGTPSREQIK 267 (394)
T ss_dssp CCTTCC---CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHH
T ss_pred ccCCCC---CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHHH
Confidence 644322 2245789999999988765 589999999999999999999999965422 12222222211110000
Q ss_pred ----------cccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1048 ----------INDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1048 ----------~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
...... ........ .....++.+++.+||+.||++|||+.|+++|-.
T Consensus 268 ~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~ 324 (394)
T 4e7w_A 268 TMNPNYMEHKFPQIRP-HPFSKVFR---PRTPPDAIDLISRLLEYTPSARLTAIEALCHPF 324 (394)
T ss_dssp HHCGGGSSSCCCCCCC-CCHHHHSC---TTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGG
T ss_pred hhChhhhhhccccccC-CcHHHhcc---ccCCHHHHHHHHHHhCCChhhCCCHHHHhcChh
Confidence 000000 00001111 112345777888999999999999999999843
No 224
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=9.7e-36 Score=338.86 Aligned_cols=251 Identities=21% Similarity=0.295 Sum_probs=203.0
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|...+.||+|+||.||+|... +++.||+|++.... .......+.+|+.++++++||||+++++++.+.+..++||
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 120 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 120 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence 56888999999999999999775 57889999985443 2233557889999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+++++|.+++.... .+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 121 e~~~~~~L~~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 194 (335)
T 2owb_A 121 ELCRRRSLLELHKRRK---ALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 194 (335)
T ss_dssp CCCTTCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred ecCCCCCHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCceecccC
Confidence 9999999999987643 4899999999999999999999 889999999999999999999999999999876433
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
.. ......||+.|+|||++.+..++.++||||||+++|||++|+.||...... ...............
T Consensus 195 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-----~~~~~~~~~~~~~~~----- 262 (335)
T 2owb_A 195 GE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK-----ETYLRIKKNEYSIPK----- 262 (335)
T ss_dssp TC--CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHHHHHHTCCCCCT-----
T ss_pred cc--cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHH-----HHHHHHhcCCCCCCc-----
Confidence 22 223457999999999999999999999999999999999999999653211 111111111000000
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
....++.+++.+||+.||++||+++|++++-.
T Consensus 263 -----------~~~~~~~~li~~~l~~dp~~Rps~~ell~~~~ 294 (335)
T 2owb_A 263 -----------HINPVAASLIQKMLQTDPTARPTINELLNDEF 294 (335)
T ss_dssp -----------TSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHH
T ss_pred -----------cCCHHHHHHHHHHccCChhHCcCHHHHhcCcc
Confidence 11124566888999999999999999998643
No 225
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=2.8e-35 Score=338.71 Aligned_cols=259 Identities=25% Similarity=0.367 Sum_probs=204.2
Q ss_pred HHHHhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccccc-------ChHHHHHHHHHHhcC-CCCceeeEeeE
Q 001275 814 VIEATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKR-------GSLSMKREIQTIGKI-RHRNLVRLEDF 884 (1109)
Q Consensus 814 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~-------~~~~~~~E~~~l~~l-~h~niv~l~~~ 884 (1109)
.....++|.+.+.||+|+||.||+|... +|+.||||++....... ....+.+|+++++++ +||||++++++
T Consensus 89 ~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~ 168 (365)
T 2y7j_A 89 AKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDS 168 (365)
T ss_dssp HHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred hhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEE
Confidence 3445678999999999999999999875 79999999985443211 134678999999999 79999999999
Q ss_pred EecCCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEe
Q 001275 885 WLRKDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHIS 964 (1109)
Q Consensus 885 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~ 964 (1109)
+...+..++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+
T Consensus 169 ~~~~~~~~lv~e~~~g~~L~~~l~~~~---~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~~~~ikl~ 242 (365)
T 2y7j_A 169 YESSSFMFLVFDLMRKGELFDYLTEKV---ALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIRLS 242 (365)
T ss_dssp EEBSSEEEEEECCCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEEC
T ss_pred EeeCCEEEEEEEeCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEE
Confidence 999999999999999999999997643 4899999999999999999999 8899999999999999999999999
Q ss_pred cccCCcccCCCCCCceeeecccCccccccccccc------CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHH
Q 001275 965 DFGIAKLLDKSPASTTSISVVGTIGYIAPENAFT------TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWV 1038 (1109)
Q Consensus 965 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~ 1038 (1109)
|||++........ .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||..... ......+
T Consensus 243 DfG~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~--~~~~~~i 317 (365)
T 2y7j_A 243 DFGFSCHLEPGEK---LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQ--ILMLRMI 317 (365)
T ss_dssp CCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHH
T ss_pred ecCcccccCCCcc---cccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCH--HHHHHHH
Confidence 9999987754322 234679999999998863 3578899999999999999999999964321 1111111
Q ss_pred HHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1039 RSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1039 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.. .... ...+. ......++.+++.+|++.||++||+++|+++|-+
T Consensus 318 ~~---~~~~---~~~~~---------~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~ 362 (365)
T 2y7j_A 318 ME---GQYQ---FSSPE---------WDDRSSTVKDLISRLLQVDPEARLTAEQALQHPF 362 (365)
T ss_dssp HH---TCCC---CCHHH---------HSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGG
T ss_pred Hh---CCCC---CCCcc---------cccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcc
Confidence 11 0000 00000 0111234667888999999999999999998743
No 226
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=4.1e-36 Score=341.53 Aligned_cols=266 Identities=23% Similarity=0.324 Sum_probs=199.1
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccccc-ChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKR-GSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
++|+..+.||+|+||+||+|... +++.||||++....... ....+.+|++++++++||||+++++++...+..++|||
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 104 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE 104 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence 57888999999999999999775 58999999985443322 24567899999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSP 976 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~ 976 (1109)
|+++++|.++..... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 105 ~~~~~~l~~~~~~~~---~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 178 (331)
T 4aaa_A 105 FVDHTILDDLELFPN---GLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG 178 (331)
T ss_dssp CCSEEHHHHHHHSTT---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred cCCcchHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCc
Confidence 999999998876433 4899999999999999999999 8899999999999999999999999999998664332
Q ss_pred CCceeeecccCcccccccccccC-CCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcC-----------
Q 001275 977 ASTTSISVVGTIGYIAPENAFTT-AKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSD----------- 1044 (1109)
Q Consensus 977 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~----------- 1044 (1109)
. ......||+.|+|||++.+. .++.++||||+||++|||++|+.||...... .............
T Consensus 179 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 255 (331)
T 4aaa_A 179 E--VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDI-DQLYHIMMCLGNLIPRHQELFNKN 255 (331)
T ss_dssp -------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCSCCHHHHHHHHHC
T ss_pred c--ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcH-HHHHHHHHHhCCCChhhhhHhhhc
Confidence 2 22335789999999988875 6899999999999999999999999654321 1111111111000
Q ss_pred ----ccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1045 ----TEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1045 ----~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
............... .......++.+++.+||+.||++||+++|+++|-
T Consensus 256 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp 308 (331)
T 4aaa_A 256 PVFAGVRLPEIKEREPLER----RYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHD 308 (331)
T ss_dssp GGGTTCCCCCCSSCCCHHH----HSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSH
T ss_pred cccccccCccccccchhhh----cccchhHHHHHHHHHHhccCcccCCCHHHHhcCc
Confidence 000001100000000 0112235577788899999999999999999864
No 227
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=3.6e-36 Score=335.23 Aligned_cols=255 Identities=22% Similarity=0.310 Sum_probs=186.2
Q ss_pred hhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChH-HHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSL-SMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~-~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
.++|+..+.||+|+||+||+|.. .+++.||+|++.......... .+.++...++.++||||+++++++...+..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 36788999999999999999976 578999999986543333333 3445555688889999999999999999999999
Q ss_pred EeccCCCHHHHHhcc-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 896 RYMENGSLRDVLHSI-TPPPTLEWNVRYKIALGAAHALAYLHYDCDP-PIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~-~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
||++ |+|.+++... .....+++..+..++.|++.|++||| +. +|+||||||+||+++.++.+||+|||+++...
T Consensus 86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 161 (290)
T 3fme_A 86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLV 161 (290)
T ss_dssp ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHSCCCCCCCSGGGCEECTTCCEEBCCC-------
T ss_pred ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeecCCccccc
Confidence 9998 4888877542 22345899999999999999999999 76 99999999999999999999999999998664
Q ss_pred CCCCCceeeecccCccccccccc----ccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENA----FTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEIN 1049 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1109)
.... .....||+.|+|||.+ .+..++.++||||+|+++|||++|+.||................ ...
T Consensus 162 ~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~---~~~--- 232 (290)
T 3fme_A 162 DDVA---KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEE---PSP--- 232 (290)
T ss_dssp -----------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHS---CCC---
T ss_pred cccc---ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhcc---CCC---
Confidence 4322 2234799999999985 56678999999999999999999999996532222111111111 000
Q ss_pred cccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1050 DIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1050 ~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
.. . ......++.+++.+|++.||++|||++|+++|-
T Consensus 233 ~~-~-----------~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~hp 268 (290)
T 3fme_A 233 QL-P-----------ADKFSAEFVDFTSQCLKKNSKERPTYPELMQHP 268 (290)
T ss_dssp CC-C-----------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTSH
T ss_pred Cc-c-----------cccCCHHHHHHHHHHhhcChhhCcCHHHHHhCc
Confidence 00 0 001123466788899999999999999999854
No 228
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=2e-35 Score=353.80 Aligned_cols=255 Identities=25% Similarity=0.340 Sum_probs=202.1
Q ss_pred HhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEE
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 894 (1109)
..++|++.++||+|+||+||+|... +++.||||++.... .......+.+|++++++++||||+++++++...+..++|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 3467999999999999999999775 78999999985433 234567789999999999999999999999999999999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeC---CCCcEEEecccCCcc
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLD---SEMEPHISDFGIAKL 971 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~---~~~~~kl~DfGla~~ 971 (1109)
|||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++ .++.+||+|||+++.
T Consensus 100 ~e~~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 173 (486)
T 3mwu_A 100 GELYTGGELFDEIIKRK---RFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTC 173 (486)
T ss_dssp ECCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTT
T ss_pred EEcCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcCeE
Confidence 99999999999987643 4899999999999999999999 88999999999999995 456799999999987
Q ss_pred cCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccc
Q 001275 972 LDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDI 1051 (1109)
Q Consensus 972 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1109)
..... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||..... .+....+.. .....
T Consensus 174 ~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~---~~~~~--- 241 (486)
T 3mwu_A 174 FQQNT---KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE--YDILKRVET---GKYAF--- 241 (486)
T ss_dssp BCCC-------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHH---TCCCS---
T ss_pred CCCCC---ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHh---CCCCC---
Confidence 64432 2234579999999998875 589999999999999999999999965321 111111111 10000
Q ss_pred cchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1052 VDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1052 ~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
+.. .......++.+++.+|++.||++|||+.|+++|-+
T Consensus 242 -~~~--------~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~hp~ 279 (486)
T 3mwu_A 242 -DLP--------QWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPW 279 (486)
T ss_dssp -CSG--------GGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHCHH
T ss_pred -CCc--------ccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCHh
Confidence 000 01111234567888999999999999999999743
No 229
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.9e-36 Score=341.96 Aligned_cols=270 Identities=24% Similarity=0.344 Sum_probs=203.4
Q ss_pred hCCCCCceeecccCeEEEEEEe-----CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCC--ce
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-----GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKD--CG 891 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~ 891 (1109)
++|++.+.||+|+||.||+|+. .+++.||||++.. ........+.+|++++++++||||+++++++...+ ..
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQH-STEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESS-CCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEecc-CCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 5688899999999999999974 4688999999853 33444567899999999999999999999987654 67
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKL 971 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~ 971 (1109)
++||||+++|+|.+++.... ..+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 120 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~ 194 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKV 194 (326)
T ss_dssp EEEECCCTTCBHHHHHHHST--TSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred EEEEECCCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcchhh
Confidence 99999999999999998643 34899999999999999999999 88999999999999999999999999999987
Q ss_pred cCCCCCCc-eeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcc--cc
Q 001275 972 LDKSPAST-TSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTE--EI 1048 (1109)
Q Consensus 972 ~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~--~~ 1048 (1109)
........ ......++..|+|||.+.+..++.++||||+|+++|||++|+.|+...... +......... ..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~------~~~~~~~~~~~~~~ 268 (326)
T 2w1i_A 195 LPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE------FMRMIGNDKQGQMI 268 (326)
T ss_dssp CCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHH------HHHHHCTTCCTHHH
T ss_pred ccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHH------HHHhhccccchhhh
Confidence 75433211 112345778899999999888999999999999999999999887532110 0000000000 00
Q ss_pred ccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1049 NDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1049 ~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
...+..................++.+++.+||+.||++||+++|+++.|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l 320 (326)
T 2w1i_A 269 VFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQI 320 (326)
T ss_dssp HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 0000000000000000112234577788899999999999999999999875
No 230
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=1.3e-35 Score=340.33 Aligned_cols=275 Identities=20% Similarity=0.303 Sum_probs=203.6
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEecC--------
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK-------- 888 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-------- 888 (1109)
.+|.+.++||+|+||+||+|.. .+++.||||++..... ......+.+|++++++++||||+++++++...
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 96 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK 96 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence 5788999999999999999977 5789999999854433 23355788999999999999999999998773
Q ss_pred CceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccC
Q 001275 889 DCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGI 968 (1109)
Q Consensus 889 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGl 968 (1109)
+..++||||+++ ++.+.+.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 97 ~~~~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 170 (351)
T 3mi9_A 97 GSIYLVFDFCEH-DLAGLLSNVL--VKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGL 170 (351)
T ss_dssp CEEEEEEECCSE-EHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred ceEEEEEeccCC-CHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccchh
Confidence 457999999985 7877776543 34899999999999999999999 88999999999999999999999999999
Q ss_pred CcccCCCCC--CceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcC-
Q 001275 969 AKLLDKSPA--STTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSD- 1044 (1109)
Q Consensus 969 a~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~- 1044 (1109)
++.+..... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... .....+......
T Consensus 171 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~~~~i~~~~~~~ 248 (351)
T 3mi9_A 171 ARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQ--HQLALISQLCGSI 248 (351)
T ss_dssp CEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHHHCCC
T ss_pred cccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChH--HHHHHHHHHhCCC
Confidence 987653322 122234678999999998876 45799999999999999999999999754221 111111111110
Q ss_pred cccc-ccccchhhhHH-----hhhchhHH------HHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCC
Q 001275 1045 TEEI-NDIVDLSLMEE-----MLVSSIRD------QVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDAS 1101 (1109)
Q Consensus 1045 ~~~~-~~~~d~~~~~~-----~~~~~~~~------~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 1101 (1109)
.... ...-....... .......+ ....+.+++.+|++.||++|||++|+++|-+-..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~ 317 (351)
T 3mi9_A 249 TPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWS 317 (351)
T ss_dssp CTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGS
T ss_pred ChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCCCCcCC
Confidence 0000 00000000000 00000001 1234678888999999999999999999876543
No 231
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=1e-35 Score=337.81 Aligned_cols=269 Identities=18% Similarity=0.263 Sum_probs=194.9
Q ss_pred hhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccc-cChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHK-RGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
.++|.+.++||+|+||+||+|.. .+++.||||++...... .....+.+|++++++++||||+++++++...+..++||
T Consensus 33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 112 (329)
T 3gbz_A 33 IDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIF 112 (329)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEE
Confidence 46799999999999999999975 47899999998544322 23456789999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee-----CCCCcEEEecccCCc
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL-----DSEMEPHISDFGIAK 970 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll-----~~~~~~kl~DfGla~ 970 (1109)
||+++ +|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+||++ ++++.+||+|||+++
T Consensus 113 e~~~~-~L~~~~~~~~---~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~ 185 (329)
T 3gbz_A 113 EYAEN-DLKKYMDKNP---DVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR 185 (329)
T ss_dssp ECCSE-EHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHH
T ss_pred ecCCC-CHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECcCCCcc
Confidence 99985 9999998654 3899999999999999999999 8899999999999999 455569999999998
Q ss_pred ccCCCCCCceeeecccCcccccccccccC-CCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcc---
Q 001275 971 LLDKSPASTTSISVVGTIGYIAPENAFTT-AKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTE--- 1046 (1109)
Q Consensus 971 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~--- 1046 (1109)
...... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||...... ...............
T Consensus 186 ~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~ 262 (329)
T 3gbz_A 186 AFGIPI--RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEI-DQLFKIFEVLGLPDDTTW 262 (329)
T ss_dssp HHC-------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCTTTS
T ss_pred ccCCcc--cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHH-HHHHHHHHHhCCCchhhh
Confidence 764332 122335789999999998875 4799999999999999999999999654221 112222211110000
Q ss_pred -----------ccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1047 -----------EINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1047 -----------~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.......... ...... ....++.+++.+|++.||++|||++|+++|-+--
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~ 323 (329)
T 3gbz_A 263 PGVTALPDWKQSFPKFRGKTL-KRVLGA---LLDDEGLDLLTAMLEMDPVKRISAKNALEHPYFS 323 (329)
T ss_dssp TTGGGSTTCCTTCCCCCCCCH-HHHHGG---GSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGS
T ss_pred hhhhhhhhhhhhhhhhccccH-hhhccc---ccCHHHHHHHHHHccCChhhCCCHHHHhCCcccC
Confidence 0000000000 000001 1124567788899999999999999999976543
No 232
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=2.2e-36 Score=334.76 Aligned_cols=249 Identities=26% Similarity=0.340 Sum_probs=193.7
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecC-CceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK-DCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~~~lv~e~ 897 (1109)
++|+..+.||+|+||+||+|+.. ++.||||++... ...+.+.+|++++++++||||+++++++... +..++||||
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 21 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC---C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhceEEeEEecCCCceEEEEEEc-CCEEEEEEecch---hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 67888999999999999999876 889999988432 3456789999999999999999999997654 468999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCC
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPA 977 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~ 977 (1109)
+++|+|.+++.... ...+++..++.++.|+++|++||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 97 ~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~- 171 (278)
T 1byg_A 97 MAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ- 171 (278)
T ss_dssp CTTEEHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC---------
T ss_pred CCCCCHHHHHHhcc-cccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeeccccccccccc-
Confidence 99999999997642 123788999999999999999999 8899999999999999999999999999998554321
Q ss_pred CceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchhh
Q 001275 978 STTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSL 1056 (1109)
Q Consensus 978 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 1056 (1109)
....+++.|+|||.+.+..++.++||||+|+++|||++ |+.||..... .+....+. ... .. ..
T Consensus 172 ----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~--~~~~~~~~---~~~-~~-~~----- 235 (278)
T 1byg_A 172 ----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL--KDVVPRVE---KGY-KM-DA----- 235 (278)
T ss_dssp --------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCG--GGHHHHHT---TTC-CC-CC-----
T ss_pred ----cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHh---cCC-CC-CC-----
Confidence 12367889999999999999999999999999999998 9999864321 11111111 100 00 00
Q ss_pred hHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1057 MEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1057 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.......+.+++.+||+.||++||+++|+++.|+++
T Consensus 236 --------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i 271 (278)
T 1byg_A 236 --------PDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHI 271 (278)
T ss_dssp --------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred --------cccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHH
Confidence 011223466788899999999999999999999875
No 233
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=342.49 Aligned_cols=254 Identities=22% Similarity=0.314 Sum_probs=184.2
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCC-CCceeeEeeEEe--------cC
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIR-HRNLVRLEDFWL--------RK 888 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~--------~~ 888 (1109)
.+|++.++||+|+||+||+|.. .+++.||||++... .......+.+|+.++.++. ||||+++++++. ..
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN-EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES-SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC-chHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 4788899999999999999976 46899999998433 3344567889999999996 999999999984 23
Q ss_pred CceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eEEeccCCCCeeeCCCCcEEEecc
Q 001275 889 DCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPP--IVHRDIKPENILLDSEMEPHISDF 966 (1109)
Q Consensus 889 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~NIll~~~~~~kl~Df 966 (1109)
...++|+||++ |+|.+++........+++..++.++.|++.||+||| +.+ |+||||||+||+++.++.+||+||
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~~~ivH~Dikp~NIl~~~~~~~kl~Df 182 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH---RQKPPIIHRDLKVENLLLSNQGTIKLCDF 182 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCCCCCGGGCEECTTSCEEBCCC
T ss_pred ceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCEEEccCCcccEEECCCCCEEEecC
Confidence 34789999996 799999876544556999999999999999999999 777 999999999999999999999999
Q ss_pred cCCcccCCCCCCc----------eeeecccCccccccccc---ccCCCCccCcchhhHHHHHHHHhCCCCCCCCcccccc
Q 001275 967 GIAKLLDKSPAST----------TSISVVGTIGYIAPENA---FTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTD 1033 (1109)
Q Consensus 967 Gla~~~~~~~~~~----------~~~~~~gt~~y~aPE~~---~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~ 1033 (1109)
|+++......... ......||+.|+|||++ .+..++.++|||||||++|||++|+.||......
T Consensus 183 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~--- 259 (337)
T 3ll6_A 183 GSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL--- 259 (337)
T ss_dssp TTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred ccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH---
Confidence 9998765432211 11134689999999988 5677899999999999999999999998643211
Q ss_pred HHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1034 IVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
......... .. .......+.+++.+||+.||++||+++|++++|+++
T Consensus 260 --~~~~~~~~~--------~~----------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~ 306 (337)
T 3ll6_A 260 --RIVNGKYSI--------PP----------HDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEI 306 (337)
T ss_dssp --------CCC--------CT----------TCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred --HhhcCcccC--------Cc----------ccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 011000000 00 000112255678899999999999999999999875
No 234
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=2.5e-35 Score=353.57 Aligned_cols=253 Identities=22% Similarity=0.281 Sum_probs=196.7
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
.++|+..++||+|+||+||+|+.. +++.||+|++.... .......+.+|++++++++||||+++++++......++||
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 357889999999999999999775 68899999986543 2334567899999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCC---CcEEEecccCCccc
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSE---MEPHISDFGIAKLL 972 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~---~~~kl~DfGla~~~ 972 (1109)
||+++|+|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+||+++.. +.+||+|||+++..
T Consensus 116 e~~~~g~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~ 189 (494)
T 3lij_A 116 ECYKGGELFDEIIHRM---KFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVF 189 (494)
T ss_dssp ECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred ecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCeEC
Confidence 9999999999887643 3899999999999999999999 8899999999999999764 45999999999876
Q ss_pred CCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 973 DKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 973 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
.... ......||+.|+|||++. ..++.++||||+||++|+|++|+.||..... ..+...+.. ..... .
T Consensus 190 ~~~~---~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~---~~~~~---~ 257 (494)
T 3lij_A 190 ENQK---KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTD--QEILRKVEK---GKYTF---D 257 (494)
T ss_dssp BTTB---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHH---TCCCC---C
T ss_pred CCCc---cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHh---CCCCC---C
Confidence 5432 223457999999999875 5689999999999999999999999965322 111111111 10000 0
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
.+. ......++.+++.+|++.||++|||+.|+++|-
T Consensus 258 ~~~---------~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~hp 293 (494)
T 3lij_A 258 SPE---------WKNVSEGAKDLIKQMLQFDSQRRISAQQALEHP 293 (494)
T ss_dssp SGG---------GTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTCH
T ss_pred chh---------cccCCHHHHHHHHHHCCCChhhCccHHHHhcCc
Confidence 000 011123456678899999999999999999763
No 235
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=1.2e-35 Score=336.84 Aligned_cols=268 Identities=18% Similarity=0.238 Sum_probs=205.9
Q ss_pred cccHHHHHHHhhCCCCC-ceeecccCeEEEEEEeC-CCcEEEEEEeeeccc-ccChHHHHHHHHHHhcC-CCCceeeEee
Q 001275 808 SYLLKQVIEATENLNAK-HVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKI-RHRNLVRLED 883 (1109)
Q Consensus 808 ~~~~~~~~~~~~~~~~~-~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~ 883 (1109)
...++......++|.+. +.||+|+||+||+|... +++.||+|++..... ......+.+|+.++.++ +||||+++++
T Consensus 17 n~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~ 96 (327)
T 3lm5_A 17 NLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHE 96 (327)
T ss_dssp CCCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEE
T ss_pred hhHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence 33344444556677776 88999999999999765 689999999865432 33466889999999999 5699999999
Q ss_pred EEecCCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCC---CCc
Q 001275 884 FWLRKDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDS---EME 960 (1109)
Q Consensus 884 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~---~~~ 960 (1109)
++...+..++||||+++|+|.+++.... ...+++..++.++.|++.||+||| +.+|+||||||+||+++. ++.
T Consensus 97 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~ 172 (327)
T 3lm5_A 97 VYENTSEIILILEYAAGGEIFSLCLPEL-AEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGD 172 (327)
T ss_dssp EEECSSEEEEEEECCTTEEGGGGGSSCC--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCC
T ss_pred EEEeCCeEEEEEEecCCCcHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCc
Confidence 9999999999999999999999986532 345899999999999999999999 889999999999999988 789
Q ss_pred EEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHH
Q 001275 961 PHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRS 1040 (1109)
Q Consensus 961 ~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~ 1040 (1109)
+||+|||+++....... .....||+.|+|||++.+..++.++||||+|+++|||++|+.||...... .....+..
T Consensus 173 ~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~ 247 (327)
T 3lm5_A 173 IKIVDFGMSRKIGHACE---LREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQ--ETYLNISQ 247 (327)
T ss_dssp EEECCGGGCEEC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHH
T ss_pred EEEeeCccccccCCccc---cccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCch--HHHHHHHh
Confidence 99999999987643322 23357999999999999999999999999999999999999999653221 11111111
Q ss_pred hhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1041 VWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1041 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
. .. .. ... ........+.+++.+|++.||++||+++|+++|-+-
T Consensus 248 ~--~~-~~----~~~--------~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h~~~ 291 (327)
T 3lm5_A 248 V--NV-DY----SEE--------TFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWL 291 (327)
T ss_dssp T--CC-CC----CTT--------TTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCGGG
T ss_pred c--cc-cc----Cch--------hhcccCHHHHHHHHHHcCCChhhCcCHHHHhCCHhh
Confidence 0 00 00 000 001122346668889999999999999999998653
No 236
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=5.3e-36 Score=343.28 Aligned_cols=266 Identities=20% Similarity=0.253 Sum_probs=204.2
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccC----------------hHHHHHHHHHHhcCCCCceeeEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRG----------------SLSMKREIQTIGKIRHRNLVRLE 882 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~----------------~~~~~~E~~~l~~l~h~niv~l~ 882 (1109)
++|.+.+.||+|+||.||+|.. +++.||+|++........ ...+.+|++++++++||||++++
T Consensus 31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~ 109 (348)
T 2pml_X 31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE 109 (348)
T ss_dssp TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence 5788999999999999999988 899999999854432211 17899999999999999999999
Q ss_pred eEEecCCceeEEEEeccCCCHHHH------HhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeEEeccCCCCeee
Q 001275 883 DFWLRKDCGIIMYRYMENGSLRDV------LHSITPPPTLEWNVRYKIALGAAHALAYLHYDCD-PPIVHRDIKPENILL 955 (1109)
Q Consensus 883 ~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~-~~ivH~Dlk~~NIll 955 (1109)
+++...+..++||||+++|+|.++ +... ....+++..+..++.|++.||+||| + .+|+||||||+||++
T Consensus 110 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dl~p~Nil~ 185 (348)
T 2pml_X 110 GIITNYDEVYIIYEYMENDSILKFDEYFFVLDKN-YTCFIPIQVIKCIIKSVLNSFSYIH---NEKNICHRDVKPSNILM 185 (348)
T ss_dssp EEEESSSEEEEEEECCTTCBSSEESSSEESSCSS-SCCCCCHHHHHHHHHHHHHHHHHHH---HTSCEECCCCCGGGEEE
T ss_pred EEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhc-cccCCCHHHHHHHHHHHHHHHHHHh---ccCCEeecCCChHhEEE
Confidence 999999999999999999999998 5432 1356899999999999999999999 7 899999999999999
Q ss_pred CCCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccC-CCCc-cCcchhhHHHHHHHHhCCCCCCCCcccccc
Q 001275 956 DSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTT-AKSK-ESDVYSYGVVLLELITRKKALDPSYKERTD 1033 (1109)
Q Consensus 956 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~sDvwSlGvil~elltg~~p~~~~~~~~~~ 1033 (1109)
+.++.+||+|||.+...... ......||+.|+|||.+.+. .++. ++||||+|+++|||++|+.||...... ..
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~ 260 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISL-VE 260 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCS-HH
T ss_pred cCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcH-HH
Confidence 99999999999999876432 23346799999999999887 5665 999999999999999999999754321 11
Q ss_pred HHHHHHHhhcCccccc----cccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1034 IVGWVRSVWSDTEEIN----DIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1034 ~~~~~~~~~~~~~~~~----~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
....+ ........ ....+ ...............++.+++.+||+.||++||+++|+++|-.
T Consensus 261 ~~~~i---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~hp~ 325 (348)
T 2pml_X 261 LFNNI---RTKNIEYPLDRNHFLYP-LTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEW 325 (348)
T ss_dssp HHHHH---TSCCCCCCCSSSSSTTT-TCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGG
T ss_pred HHHHH---hccCcCCccchhhhhcc-ccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcCcc
Confidence 11111 11110000 00000 0000000000112345677888999999999999999998754
No 237
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=5.7e-36 Score=367.49 Aligned_cols=249 Identities=20% Similarity=0.256 Sum_probs=194.8
Q ss_pred ceeecccCeEEEEEEe---CCCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEEeccC
Q 001275 825 HVIGRGAHGIVYKASL---GPNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYRYMEN 900 (1109)
Q Consensus 825 ~~lG~G~~g~Vy~~~~---~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 900 (1109)
++||+|+||+||+|.+ ..++.||||++..... .....++.+|++++++++|||||++++++.. +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 4799999999999955 3467899999865432 2335689999999999999999999999964 568899999999
Q ss_pred CCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCCC-c
Q 001275 901 GSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPAS-T 979 (1109)
Q Consensus 901 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~-~ 979 (1109)
|+|.++++... .+++..++.++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++.+...... .
T Consensus 454 g~L~~~l~~~~---~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~ 527 (635)
T 4fl3_A 454 GPLNKYLQQNR---HVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK 527 (635)
T ss_dssp EEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC------
T ss_pred CCHHHHHhhCC---CCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccc
Confidence 99999997643 4899999999999999999999 889999999999999999999999999999877543321 2
Q ss_pred eeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccccccccchhhhH
Q 001275 980 TSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLME 1058 (1109)
Q Consensus 980 ~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 1058 (1109)
......+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... .+...+.. .. .. ..
T Consensus 528 ~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~~---~~-~~-~~------- 593 (635)
T 4fl3_A 528 AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLEK---GE-RM-GC------- 593 (635)
T ss_dssp -------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHT---TC-CC-CC-------
T ss_pred cccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHc---CC-CC-CC-------
Confidence 2233467889999999999999999999999999999998 99998654221 11111111 00 00 00
Q ss_pred HhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1059 EMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1059 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
......++.+++.+||+.||++||+++++++.|+++
T Consensus 594 ------p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 629 (635)
T 4fl3_A 594 ------PAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 629 (635)
T ss_dssp ------CTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred ------CCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 011224567788899999999999999999999865
No 238
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1e-35 Score=345.14 Aligned_cols=265 Identities=22% Similarity=0.310 Sum_probs=195.4
Q ss_pred HHhhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecC------
Q 001275 816 EATENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK------ 888 (1109)
Q Consensus 816 ~~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------ 888 (1109)
...++|...++||+|+||+||+|.. .+++.||||++..... ...+|++++++++||||+++++++...
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~-----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR-----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT-----SCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc-----hHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 4557899999999999999999976 5789999998853322 234799999999999999999998543
Q ss_pred --------------------------------CceeEEEEeccCCCHHHHHhcc-CCCCCCCHHHHHHHHHHHHHHHHHh
Q 001275 889 --------------------------------DCGIIMYRYMENGSLRDVLHSI-TPPPTLEWNVRYKIALGAAHALAYL 935 (1109)
Q Consensus 889 --------------------------------~~~~lv~e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~~L 935 (1109)
...++||||++ |+|.+.+... .....+++..+..++.|+++||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L 157 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFI 157 (383)
T ss_dssp -------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 23789999998 5888777642 2234589999999999999999999
Q ss_pred hcCCCCCeEEeccCCCCeeeC-CCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccC-CCCccCcchhhHHH
Q 001275 936 HYDCDPPIVHRDIKPENILLD-SEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTT-AKSKESDVYSYGVV 1013 (1109)
Q Consensus 936 H~~~~~~ivH~Dlk~~NIll~-~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwSlGvi 1013 (1109)
| +.+|+||||||+||+++ .++.+||+|||+|+....... .....||+.|+|||.+.+. .++.++||||+||+
T Consensus 158 H---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~i 231 (383)
T 3eb0_A 158 H---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP---SVAYICSRFYRAPELMLGATEYTPSIDLWSIGCV 231 (383)
T ss_dssp H---TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC---CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHH
T ss_pred H---HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC---CcCcccCCCccCHHHhcCCCCCCcchhhhhHHHH
Confidence 9 89999999999999997 688999999999987644332 2335789999999988775 48999999999999
Q ss_pred HHHHHhCCCCCCCCccccccHHHHHHHhhcCcc-------------ccccccchhhhHHhhhchhHHHHHHHHHHHHhcc
Q 001275 1014 LLELITRKKALDPSYKERTDIVGWVRSVWSDTE-------------EINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCT 1080 (1109)
Q Consensus 1014 l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl 1080 (1109)
+|||++|+.||..... ...+...+........ .......... ...... ....++.+++.+|+
T Consensus 232 l~ell~g~~pf~~~~~-~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~li~~~L 306 (383)
T 3eb0_A 232 FGELILGKPLFSGETS-IDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDW-RKILPE---GTPSLAIDLLEQIL 306 (383)
T ss_dssp HHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCH-HHHSCT---TCCHHHHHHHHHHC
T ss_pred HHHHHhCCCCCCCCCh-HHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccH-HhhCCC---CCCHHHHHHHHHHc
Confidence 9999999999965422 2222222221111100 0000000000 011111 12234677888999
Q ss_pred CCCCCCCCCHHHHHHHh
Q 001275 1081 EKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1081 ~~dP~~RPs~~evl~~L 1097 (1109)
+.||++|||+.|+++|-
T Consensus 307 ~~dP~~R~t~~e~l~hp 323 (383)
T 3eb0_A 307 RYEPDLRINPYEAMAHP 323 (383)
T ss_dssp CSSGGGSCCHHHHHTSG
T ss_pred cCChhhCCCHHHHhcCH
Confidence 99999999999999764
No 239
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=1.9e-35 Score=341.25 Aligned_cols=267 Identities=20% Similarity=0.238 Sum_probs=192.0
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEecCC------c
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKD------C 890 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~ 890 (1109)
++|...+.||+|+||+||+|... +++.||||++.... .......+.+|+.+++.++||||+++++++...+ .
T Consensus 25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 104 (371)
T 2xrw_A 25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQD 104 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCE
T ss_pred hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccc
Confidence 57888999999999999999764 68899999986432 2233457889999999999999999999997655 6
Q ss_pred eeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 891 GIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 891 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
.++||||+++ +|.+++.. .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 105 ~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 175 (371)
T 2xrw_A 105 VYIVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 175 (371)
T ss_dssp EEEEEECCSE-EHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCC--
T ss_pred eEEEEEcCCC-CHHHHHhh-----ccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEeeccc
Confidence 7999999975 78888853 3889999999999999999999 8899999999999999999999999999998
Q ss_pred ccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccc
Q 001275 971 LLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEIND 1050 (1109)
Q Consensus 971 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1109)
...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||...... ......+............
T Consensus 176 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~ 251 (371)
T 2xrw_A 176 TAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHI-DQWNKVIEQLGTPCPEFMK 251 (371)
T ss_dssp -----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHC-CCCCCHHHHT
T ss_pred cccccc---ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHHHH
Confidence 664321 223457999999999999999999999999999999999999999653211 1111111100000000000
Q ss_pred ccchhh------------------hHHh----hhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1051 IVDLSL------------------MEEM----LVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1051 ~~d~~~------------------~~~~----~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.+.+.. .... ..........++.+++.+|++.||++|||++|+++|-+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~ 321 (371)
T 2xrw_A 252 KLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPY 321 (371)
T ss_dssp TSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSHH
T ss_pred HhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCcc
Confidence 000000 0000 00001223456788899999999999999999999763
No 240
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=1.2e-35 Score=355.88 Aligned_cols=254 Identities=25% Similarity=0.334 Sum_probs=203.8
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc--ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH--KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 894 (1109)
.++|...++||+|+||+||+|... +++.||||++..... ......+.+|++++++++||||+++++++...+..++|
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 357889999999999999999775 789999999855432 34566799999999999999999999999999999999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee---CCCCcEEEecccCCcc
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL---DSEMEPHISDFGIAKL 971 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll---~~~~~~kl~DfGla~~ 971 (1109)
|||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||+++.
T Consensus 105 ~e~~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 178 (484)
T 3nyv_A 105 GEVYTGGELFDEIISRK---RFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTH 178 (484)
T ss_dssp ECCCCSCBHHHHHHTCS---CCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHH
T ss_pred EecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEE
Confidence 99999999999997643 4899999999999999999999 8899999999999999 5678999999999987
Q ss_pred cCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccc
Q 001275 972 LDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDI 1051 (1109)
Q Consensus 972 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1109)
...... .....||+.|+|||++.+ .++.++||||+||++|+|++|+.||..... ......+.. ......
T Consensus 179 ~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~---~~~~~~-- 247 (484)
T 3nyv_A 179 FEASKK---MKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANE--YDILKKVEK---GKYTFE-- 247 (484)
T ss_dssp BCCCCS---HHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHH---CCCCCC--
T ss_pred cccccc---cccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHc---CCCCCC--
Confidence 654322 233579999999998865 689999999999999999999999965321 111111111 100000
Q ss_pred cchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1052 VDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1052 ~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.+ .......++.+++.+|++.||++|||++|+++|-+
T Consensus 248 -~~---------~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~~ 284 (484)
T 3nyv_A 248 -LP---------QWKKVSESAKDLIRKMLTYVPSMRISARDALDHEW 284 (484)
T ss_dssp -SG---------GGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHH
T ss_pred -Cc---------ccccCCHHHHHHHHHHCCCChhHCcCHHHHhhChh
Confidence 00 01112234566888999999999999999998754
No 241
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=2.6e-35 Score=329.90 Aligned_cols=273 Identities=21% Similarity=0.326 Sum_probs=202.1
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
++|+..+.||+|+||+||+|... +++.||||++..... ......+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57888999999999999999775 689999999854432 2335678899999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSP 976 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~ 976 (1109)
|++ |+|.+++.... ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 83 ~~~-~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~ 157 (299)
T 2r3i_A 83 FLH-QDLKKFMDASA-LTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV 157 (299)
T ss_dssp CCS-EEHHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred ccc-CCHHHHHHhhh-ccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc
Confidence 998 69999997643 234889999999999999999999 8899999999999999999999999999998764322
Q ss_pred CCceeeecccCcccccccccccCC-CCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccc-ccc---
Q 001275 977 ASTTSISVVGTIGYIAPENAFTTA-KSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEI-NDI--- 1051 (1109)
Q Consensus 977 ~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--- 1051 (1109)
. ......+|+.|+|||.+.+.. ++.++||||+|+++|||++|+.||...... ................. ...
T Consensus 158 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 234 (299)
T 2r3i_A 158 R--TYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI-DQLFRIFRTLGTPDEVVWPGVTSM 234 (299)
T ss_dssp B--CTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCTTTSTTGGGS
T ss_pred c--ccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHH-HHHHHHHHHhCCCchhhhhHhhcC
Confidence 1 122346899999999988765 799999999999999999999999654221 11222222111110000 000
Q ss_pred --cchhhh---HHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1052 --VDLSLM---EEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1052 --~d~~~~---~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
..+... .............++.+++.+|++.||++||+++|+++|-+-
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~hp~~ 287 (299)
T 2r3i_A 235 PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFF 287 (299)
T ss_dssp TTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGG
T ss_pred cccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcChhh
Confidence 000000 000000001122456678889999999999999999996543
No 242
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-35 Score=361.78 Aligned_cols=336 Identities=17% Similarity=0.169 Sum_probs=227.1
Q ss_pred CCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEE
Q 001275 358 LSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLD 437 (1109)
Q Consensus 358 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ 437 (1109)
+++++.|++++|.++...+..+..+++|++|++++|.+++..|..|..+++|+.|+|++|.+++..|..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56777888888887765555667777777777777777776666777777777777777777776666677777777777
Q ss_pred ecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCC
Q 001275 438 FINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGA 517 (1109)
Q Consensus 438 ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~ 517 (1109)
|++|.|++..+..+..+++|++|+|++|++.+..|..++.+++|+.|++++|++++.
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------------- 186 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----------------------- 186 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-----------------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-----------------------
Confidence 777777754444456666677777776666665555555555555555444444432
Q ss_pred CCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCCcccccc
Q 001275 518 IPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSW 597 (1109)
Q Consensus 518 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l 597 (1109)
.++.+++|+.|++++|.+++ +....+|+.|++++|.++. +|..+. ++|+.|+|++|++++ +..+..+
T Consensus 187 ---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~-~~~~~~--~~L~~L~L~~n~l~~--~~~l~~l 253 (597)
T 3oja_B 187 ---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV-VRGPVN--VELTILKLQHNNLTD--TAWLLNY 253 (597)
T ss_dssp ---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE-EECSCC--SCCCEEECCSSCCCC--CGGGGGC
T ss_pred ---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc-cccccC--CCCCEEECCCCCCCC--ChhhccC
Confidence 13334455555555555542 1223345555666665553 222221 466666677666664 3556666
Q ss_pred cccceeccccccccCCCcchhhhhhhhhhhhcccCcCCCCCCCCchhhhhhhhhhcccccccccccCcchhhcccCCeEE
Q 001275 598 KSLSILKLSENHFTGGIPTFISELEKLLELQLGGNQLGGEIPPSIGALQDLSYALNLSKNGLTGRIPSDLEKLSKLEQLD 677 (1109)
Q Consensus 598 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~l~~l~~~L~L~~N~l~g~ip~~l~~l~~L~~L~ 677 (1109)
++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++ +|..++.++.| ..|+|++|.++ .+|..++.+++|+.||
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L-~~L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL-KVLDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTC-CEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCC-cEEECCCCCCC-ccCcccccCCCCCEEE
Confidence 777777777777776666677777777777777777763 56666667777 46888888888 6888899999999999
Q ss_pred ccCCcccccCCCCCccccceEEeeeccccccccchhhhhccCCCCCCCCCCCccccccc
Q 001275 678 ISSNNLTGTLSPLSNIHSLVEVNVSYNLFTGPVPETLMNLLGPSPSSFSGNPSLCVKCL 736 (1109)
Q Consensus 678 Ls~N~l~g~~~~l~~~~~l~~l~~~~n~l~g~~p~~~~~~~~~~~~~~~gn~~~c~~~~ 736 (1109)
|++|+|++. | ++.+++|+.|++++|++++..+..+.. ......+.+++..|+.+.
T Consensus 331 L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~~~~~~~~--~~~~~~~~~~~~~C~~~~ 385 (597)
T 3oja_B 331 LDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNSLRALFR--NVARPAVDDADQHCKIDY 385 (597)
T ss_dssp CCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHHHHHHTT--TCCTTTBCCCCCCCCTTC
T ss_pred CCCCCCCCc-C-hhhcCCCCEEEeeCCCCCChhHHHHHH--HHhhhccccccccCCcch
Confidence 999999864 3 667889999999999999875533222 225566889999998654
No 243
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=7.8e-35 Score=326.95 Aligned_cols=255 Identities=24% Similarity=0.290 Sum_probs=199.7
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc---ccChHHHHHHHHHHhcCCCCceeeEeeEEe--cCCce
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH---KRGSLSMKREIQTIGKIRHRNLVRLEDFWL--RKDCG 891 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~ 891 (1109)
.++|.+.+.||+|+||.||+|... +++.||+|++..... ......+.+|++++++++||||+++++++. ..+..
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 368999999999999999999774 688999999854321 234567899999999999999999999984 44578
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKL 971 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~ 971 (1109)
++||||++++ +.+++.... ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++..
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~ 158 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVP-EKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEA 158 (305)
T ss_dssp EEEEECCSEE-HHHHHHHST-TCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEehhccCC-HHHHHHhCc-ccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeeccccccc
Confidence 9999999976 777776543 345899999999999999999999 88999999999999999999999999999987
Q ss_pred cCCCCCCceeeecccCcccccccccccCCC--CccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccc
Q 001275 972 LDKSPASTTSISVVGTIGYIAPENAFTTAK--SKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEIN 1049 (1109)
Q Consensus 972 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1109)
..............||+.|+|||++.+... +.++||||+|+++|||++|+.||..... ...............
T Consensus 159 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~i~~~~~~~~ 233 (305)
T 2wtk_C 159 LHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNI-----YKLFENIGKGSYAIP 233 (305)
T ss_dssp CCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHHHHHHCCCCCC
T ss_pred cCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHhcCCCCCC
Confidence 754444444445679999999998876544 7899999999999999999999964321 111111111100000
Q ss_pred cccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1050 DIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1050 ~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
......+.+++.+|++.||++||+++|+++|-+
T Consensus 234 ----------------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~ 266 (305)
T 2wtk_C 234 ----------------GDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSW 266 (305)
T ss_dssp ----------------SSSCHHHHHHHHHHTCSSTTTSCCHHHHHHSHH
T ss_pred ----------------CccCHHHHHHHHHHccCChhhCCCHHHHhcCcc
Confidence 011234566888999999999999999998754
No 244
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.5e-35 Score=335.82 Aligned_cols=275 Identities=24% Similarity=0.295 Sum_probs=199.0
Q ss_pred HHhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccc----cChHHHHHHHHHHhcCCCCceeeEeeEEecCCc
Q 001275 816 EATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHK----RGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDC 890 (1109)
Q Consensus 816 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 890 (1109)
...++|...+.||+|+||+||+|... +++.||||++...... .....+.+|++++++++||||+++++++...+.
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN 86 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence 34578999999999999999999775 5899999998543222 123468899999999999999999999999999
Q ss_pred eeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 891 GIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 891 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
.++||||+++ +|.+++.... ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 87 ~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~ 160 (346)
T 1ua2_A 87 ISLVFDFMET-DLEVIIKDNS--LVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAK 160 (346)
T ss_dssp CEEEEECCSE-EHHHHHTTCC--SSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGS
T ss_pred eEEEEEcCCC-CHHHHHHhcC--cCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEecccce
Confidence 9999999986 8998887533 34788899999999999999999 8899999999999999999999999999998
Q ss_pred ccCCCCCCceeeecccCcccccccccccC-CCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCc-c--
Q 001275 971 LLDKSPASTTSISVVGTIGYIAPENAFTT-AKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDT-E-- 1046 (1109)
Q Consensus 971 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~-~-- 1046 (1109)
....... ......||+.|+|||++.+. .++.++||||+||++|||++|..||..... ...+........... .
T Consensus 161 ~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~-~~~~~~i~~~~~~~~~~~~ 237 (346)
T 1ua2_A 161 SFGSPNR--AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSD-LDQLTRIFETLGTPTEEQW 237 (346)
T ss_dssp TTTSCCC--CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCTTTS
T ss_pred eccCCcc--cCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHcCCCChhhh
Confidence 7643322 22345789999999988764 579999999999999999999988865321 112222222111100 0
Q ss_pred ----ccccccchhhhHHh-hhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1047 ----EINDIVDLSLMEEM-LVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1047 ----~~~~~~d~~~~~~~-~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
...+.+........ ..........++.+++.+|++.||++|||++|+++|-+-
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~~f 295 (346)
T 1ua2_A 238 PDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYF 295 (346)
T ss_dssp SSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGG
T ss_pred hhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcChhh
Confidence 00000000000000 000001122457778889999999999999999998754
No 245
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=3e-35 Score=348.36 Aligned_cols=260 Identities=17% Similarity=0.256 Sum_probs=201.5
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCC-CceeeEeeEEecCCceeEEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRH-RNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~~~lv~e 896 (1109)
++|.+.++||+|+||.||+|.. .+++.||||++..... ...+.+|+++++.++| +++..+..++...+..++|||
T Consensus 7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~---~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK---HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS---SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc---cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 6789999999999999999976 5689999998754322 2357899999999976 566666667777888899999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee---CCCCcEEEecccCCcccC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL---DSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll---~~~~~~kl~DfGla~~~~ 973 (1109)
|+ +++|.+++.... ..+++..++.++.||+.||+||| +.+||||||||+|||+ +.++.+||+|||+++.+.
T Consensus 84 ~~-g~sL~~ll~~~~--~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~ 157 (483)
T 3sv0_A 84 LL-GPSLEDLFNFCS--RKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYR 157 (483)
T ss_dssp CC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred CC-CCCHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCcceecc
Confidence 99 899999997543 34899999999999999999999 8899999999999999 588999999999998765
Q ss_pred CCCCC-----ceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccc
Q 001275 974 KSPAS-----TTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEI 1048 (1109)
Q Consensus 974 ~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1109)
..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||....... ....+....
T Consensus 158 ~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~--~~~~~~~i~------ 229 (483)
T 3sv0_A 158 DTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGT--KKQKYEKIS------ 229 (483)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSS--HHHHHHHHH------
T ss_pred CCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchh--HHHHHHHHh------
Confidence 43321 11224689999999999999999999999999999999999999997542211 111111100
Q ss_pred ccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1049 NDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1049 ~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
..... ............++.+++.+||+.||++||+++++++.|+++
T Consensus 230 ----~~~~~-~~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l 276 (483)
T 3sv0_A 230 ----EKKVA-TSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDL 276 (483)
T ss_dssp ----HHHHH-SCHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred ----hcccc-ccHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 00000 000000011234577788899999999999999999998875
No 246
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=3.6e-35 Score=353.13 Aligned_cols=254 Identities=23% Similarity=0.281 Sum_probs=199.4
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccc------------cChHHHHHHHHHHhcCCCCceeeEeeE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHK------------RGSLSMKREIQTIGKIRHRNLVRLEDF 884 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------------~~~~~~~~E~~~l~~l~h~niv~l~~~ 884 (1109)
.++|.+.++||+|+||+||+|... +++.||+|++...... .....+.+|++++++++||||++++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 467899999999999999999765 5789999998644321 335678999999999999999999999
Q ss_pred EecCCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCC---cE
Q 001275 885 WLRKDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEM---EP 961 (1109)
Q Consensus 885 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~---~~ 961 (1109)
+...+..++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+
T Consensus 115 ~~~~~~~~lv~e~~~gg~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~ 188 (504)
T 3q5i_A 115 FEDKKYFYLVTEFYEGGELFEQIINRH---KFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNI 188 (504)
T ss_dssp EECSSEEEEEEECCTTCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCCSSE
T ss_pred EEcCCEEEEEEecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCCccE
Confidence 999999999999999999999987643 3899999999999999999999 88999999999999998776 69
Q ss_pred EEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHh
Q 001275 962 HISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSV 1041 (1109)
Q Consensus 962 kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~ 1041 (1109)
||+|||+++...... ......||+.|+|||++. ..++.++||||+||++|+|++|+.||..... ... ....
T Consensus 189 kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~---~~~i 259 (504)
T 3q5i_A 189 KIVDFGLSSFFSKDY---KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQND--QDI---IKKV 259 (504)
T ss_dssp EECCCTTCEECCTTS---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHH---HHHH
T ss_pred EEEECCCCEEcCCCC---ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCH--HHH---HHHH
Confidence 999999998765432 223457999999999876 5689999999999999999999999965321 111 1111
Q ss_pred hcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1042 WSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1042 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
....... +.. . ......++.+++.+|++.||++|||++|+++|-+
T Consensus 260 ~~~~~~~----~~~-----~---~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h~~ 304 (504)
T 3q5i_A 260 EKGKYYF----DFN-----D---WKNISDEAKELIKLMLTYDYNKRCTAEEALNSRW 304 (504)
T ss_dssp HHCCCCC----CHH-----H---HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred HcCCCCC----Ccc-----c---cCCCCHHHHHHHHHHcCCChhHCCCHHHHhcCHh
Confidence 1110000 000 0 0111234667888999999999999999998754
No 247
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=1.6e-35 Score=335.31 Aligned_cols=255 Identities=24% Similarity=0.337 Sum_probs=195.9
Q ss_pred HhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc-------ccChHHHHHHHHHHhcCCCCceeeEeeEEecC
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH-------KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK 888 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 888 (1109)
..++|.+.+.||+|+||.||+|... +++.||||.+..... ......+.+|++++++++||||+++++++...
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 87 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE 87 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence 3467999999999999999999764 578999999854321 12234588999999999999999999998765
Q ss_pred CceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCc---EEEec
Q 001275 889 DCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEME---PHISD 965 (1109)
Q Consensus 889 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~---~kl~D 965 (1109)
+ .++||||+++|+|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+||+++.++. +||+|
T Consensus 88 ~-~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~D 160 (322)
T 2ycf_A 88 D-YYIVLELMEGGELFDKVVGNK---RLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITD 160 (322)
T ss_dssp S-EEEEEECCTTEETHHHHSTTC---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEECC
T ss_pred c-eEEEEecCCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEEcc
Confidence 4 899999999999999987543 4899999999999999999999 889999999999999987654 99999
Q ss_pred ccCCcccCCCCCCceeeecccCcccccccccc---cCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhh
Q 001275 966 FGIAKLLDKSPASTTSISVVGTIGYIAPENAF---TTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVW 1042 (1109)
Q Consensus 966 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~ 1042 (1109)
||+++...... ......||+.|+|||++. ...++.++||||+||++|+|++|+.||...... ..+...+....
T Consensus 161 fg~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~~~ 236 (322)
T 2ycf_A 161 FGHSKILGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ-VSLKDQITSGK 236 (322)
T ss_dssp CTTCEECCCCH---HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCS-SCHHHHHHHTC
T ss_pred Cccceeccccc---ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchH-HHHHHHHHhCc
Confidence 99998764321 122357899999999864 567899999999999999999999999654222 12222211100
Q ss_pred cCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1043 SDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1043 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
. .. .+.. ......++.+++.+|++.||++||+++|+++|-
T Consensus 237 ~------~~-~~~~--------~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h~ 276 (322)
T 2ycf_A 237 Y------NF-IPEV--------WAEVSEKALDLVKKLLVVDPKARFTTEEALRHP 276 (322)
T ss_dssp C------CC-CHHH--------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSG
T ss_pred c------cc-Cchh--------hhhcCHHHHHHHHHHcccCHhhCCCHHHHhhCc
Confidence 0 00 0000 011234566788899999999999999999764
No 248
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=2.3e-35 Score=346.69 Aligned_cols=197 Identities=23% Similarity=0.292 Sum_probs=169.8
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcC------CCCceeeEeeEEecCCce
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI------RHRNLVRLEDFWLRKDCG 891 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~~~~ 891 (1109)
.+|++.++||+|+||+||+|... +++.||||++.. .......+.+|+++++.+ +|+||+++++++...+..
T Consensus 97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~--~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRN--EKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECS--CHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECC--ccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 56888999999999999999664 589999999843 223345677888888777 577999999999999999
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCc--EEEecccCC
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEME--PHISDFGIA 969 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~--~kl~DfGla 969 (1109)
++||||++ ++|.+++.... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||++
T Consensus 175 ~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a 249 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKNK-FQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIKVIDFGSS 249 (429)
T ss_dssp EEEECCCC-CBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred EEEEeccC-CCHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEccCCCcceEEeecccc
Confidence 99999996 69999988644 234899999999999999999999 889999999999999999887 999999999
Q ss_pred cccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCC
Q 001275 970 KLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPS 1027 (1109)
Q Consensus 970 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~ 1027 (1109)
+...... ....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 250 ~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 250 CYEHQRV-----YTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp EETTCCC-----CSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eecCCcc-----cccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 7654322 2357899999999999999999999999999999999999998654
No 249
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=6e-36 Score=341.61 Aligned_cols=254 Identities=22% Similarity=0.338 Sum_probs=197.4
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHH-HhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQT-IGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
++|+..+.||+|+||+||+|.. .+|+.||||++..........++..|..+ ++.++||||+++++++...+..++|||
T Consensus 51 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e 130 (340)
T 3an0_A 51 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICME 130 (340)
T ss_dssp SCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEEEC
T ss_pred hheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEEHH
Confidence 5678889999999999999976 57899999998655444445556666665 777899999999999999999999999
Q ss_pred eccCCCHHHHHhcc-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 897 YMENGSLRDVLHSI-TPPPTLEWNVRYKIALGAAHALAYLHYDCDP-PIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~-~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
|+++ +|.+++... .....+++..++.++.|+++||+||| +. +|+||||||+||+++.++.+||+|||+++....
T Consensus 131 ~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~ 206 (340)
T 3an0_A 131 LMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVD 206 (340)
T ss_dssp CCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCSCCSTTEEECSTTCEEECCCSHHHHHSC
T ss_pred HhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeeCCCceeccc
Confidence 9985 999988642 12345899999999999999999999 75 999999999999999999999999999986643
Q ss_pred CCCCceeeecccCcccccccccc----cCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccc
Q 001275 975 SPASTTSISVVGTIGYIAPENAF----TTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEIND 1050 (1109)
Q Consensus 975 ~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1109)
. .......||+.|+|||++. ...++.++|||||||++|||++|+.||.........+...+. ... ..
T Consensus 207 ~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~~~~~~~~----~~~--~~ 277 (340)
T 3an0_A 207 S---VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVE----EPS--PQ 277 (340)
T ss_dssp H---HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHH----SCC--CC
T ss_pred c---cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHHHHHHHhc----CCC--CC
Confidence 2 1122347999999999864 347899999999999999999999999753222111111111 100 00
Q ss_pred ccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1051 IVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1051 ~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
. . ......++.+++.+||+.||++||++.|++++-
T Consensus 278 ~-~-----------~~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp 312 (340)
T 3an0_A 278 L-P-----------ADKFSAEFVDFTSQCLKKNSKERPTYPELMQHP 312 (340)
T ss_dssp C-C-----------GGGSCHHHHHHHHHHTCSSGGGSCCHHHHTTSH
T ss_pred C-C-----------cccCCHHHHHHHHHHccCCcccCcCHHHHhcCc
Confidence 0 0 001123466788899999999999999999864
No 250
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=1.7e-35 Score=339.69 Aligned_cols=272 Identities=22% Similarity=0.323 Sum_probs=201.1
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecC-----Cce
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK-----DCG 891 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~ 891 (1109)
.++|...+.||+|+||+||+|... +++.||||++...........+.+|++++++++||||+++++++... ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 367889999999999999999775 68999999985444444456788999999999999999999987654 567
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKL 971 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~ 971 (1109)
++||||++ |+|.+++... .+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 90 ~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~ 161 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ----MLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARI 161 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEeccC-ccHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEecccccc
Confidence 99999997 5999998763 3899999999999999999999 88999999999999999999999999999987
Q ss_pred cCCCCCCc--------eeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhh
Q 001275 972 LDKSPAST--------TSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVW 1042 (1109)
Q Consensus 972 ~~~~~~~~--------~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~ 1042 (1109)
........ ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ....... ...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~~-~~~ 239 (353)
T 2b9h_A 162 IDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYR-HQLLLIF-GII 239 (353)
T ss_dssp CC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHH-HHH
T ss_pred cccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcH-HHHHHHH-HHh
Confidence 65332111 1223578999999998764 67899999999999999999999999654211 1111111 111
Q ss_pred cCc---cccccccchhhhHHh----------hhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1043 SDT---EEINDIVDLSLMEEM----------LVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1043 ~~~---~~~~~~~d~~~~~~~----------~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
... ............... ..........++.+++.+|++.||++||+++|+++|-+-
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~ 309 (353)
T 2b9h_A 240 GTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEHPYL 309 (353)
T ss_dssp CCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGG
T ss_pred CCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcCccc
Confidence 100 000000000000000 000001223456778889999999999999999997543
No 251
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=1.1e-35 Score=348.48 Aligned_cols=264 Identities=25% Similarity=0.348 Sum_probs=193.5
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCC------ce
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKD------CG 891 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~~ 891 (1109)
.+|...++||+|+||+||+|+.. +++.||||++.... ....+|++++++++|||||++++++.... ..
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~-----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~ 128 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK-----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL 128 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT-----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc-----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeE
Confidence 35788899999999999999875 58999999985332 22347999999999999999999885422 35
Q ss_pred eEEEEeccCCCHHHHHhcc-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCC-CcEEEecccCC
Q 001275 892 IIMYRYMENGSLRDVLHSI-TPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSE-MEPHISDFGIA 969 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~-~~~kl~DfGla 969 (1109)
++||||+++ ++.+.+... .....+++..+..++.|+++||+||| +.+|+||||||+|||++.+ +.+||+|||++
T Consensus 129 ~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a 204 (420)
T 1j1b_A 129 NLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSA 204 (420)
T ss_dssp EEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred Eeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccchhh
Confidence 789999986 666665432 22345899999999999999999999 8999999999999999965 56899999999
Q ss_pred cccCCCCCCceeeecccCcccccccccccC-CCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcc--
Q 001275 970 KLLDKSPASTTSISVVGTIGYIAPENAFTT-AKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTE-- 1046 (1109)
Q Consensus 970 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~-- 1046 (1109)
+....... .....||+.|+|||++.+. .++.++||||+||++|||++|+.||.... ....+..++........
T Consensus 205 ~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~-~~~~l~~i~~~lg~p~~~~ 280 (420)
T 1j1b_A 205 KQLVRGEP---NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS-GVDQLVEIIKVLGTPTREQ 280 (420)
T ss_dssp EECCTTCC---CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHHHCSCCHHH
T ss_pred hhcccCCC---ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHHHhCCCCHHH
Confidence 87644322 2235789999999998765 78999999999999999999999996542 22222222222111000
Q ss_pred ------ccccccchhh----hHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1047 ------EINDIVDLSL----MEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1047 ------~~~~~~d~~~----~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
...+...+.. ...... .....++.+++.+|++.||++||++.|+++|-+
T Consensus 281 ~~~~~~~~~~~~~p~~~~~~~~~~~~---~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~ 339 (420)
T 1j1b_A 281 IREMNPNYTEFKFPQIKAHPWTKVFR---PRTPPEAIALCSRLLEYTPTARLTPLEACAHSF 339 (420)
T ss_dssp HHHHCSCCCCCCCCCCCCCCHHHHSC---TTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred HHhhChhhhhhccCccCCCCHHHhcC---CCCCHHHHHHHHHhccCChhHCCCHHHHhCCHh
Confidence 0000000000 000000 111245677888999999999999999998754
No 252
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.1e-35 Score=329.32 Aligned_cols=254 Identities=22% Similarity=0.310 Sum_probs=198.3
Q ss_pred HhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
..++|...+.||+|+||.||+|... +++.||+|.+... .....+.+|++++++++||||+++++++...+..++||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 103 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE---SDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVM 103 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT---SCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch---HHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEe
Confidence 3467899999999999999999775 5899999998543 34567899999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+++|+|.+++.... ..+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 104 e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 178 (314)
T 3com_A 104 EYCGAGSVSDIIRLRN--KTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDT 178 (314)
T ss_dssp ECCTTEEHHHHHHHHT--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTT
T ss_pred ecCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhh
Confidence 9999999999997432 34899999999999999999999 889999999999999999999999999999866432
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
. .......||+.|+|||.+.+..++.++||||+|+++|+|++|+.||....... ....... ... .....
T Consensus 179 ~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~--~~~---~~~~~-- 247 (314)
T 3com_A 179 M--AKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMR--AIFMIPT--NPP---PTFRK-- 247 (314)
T ss_dssp B--SCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHH--HHHHHHH--SCC---CCCSS--
T ss_pred c--cccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHH--HHHHHhc--CCC---cccCC--
Confidence 2 12234578999999999999999999999999999999999999986432111 0000000 000 00000
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
......++.+++.+||+.||++||++.|++++-.
T Consensus 248 ---------~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~~~ 281 (314)
T 3com_A 248 ---------PELWSDNFTDFVKQCLVKSPEQRATATQLLQHPF 281 (314)
T ss_dssp ---------GGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTSHH
T ss_pred ---------cccCCHHHHHHHHHHccCChhhCcCHHHHHhCHH
Confidence 0011234667888999999999999999998654
No 253
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=3.3e-35 Score=338.36 Aligned_cols=279 Identities=17% Similarity=0.238 Sum_probs=193.3
Q ss_pred HHHHHHhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCc
Q 001275 812 KQVIEATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDC 890 (1109)
Q Consensus 812 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 890 (1109)
.+.....++|.+.+.||+|+||+||+|+.. +++.||||++... ........+|++.+..++||||+++++++...+.
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~ 93 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD--PRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGE 93 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECC--TTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC--ccccHHHHHHHHHHHhcCCCCcccHHHhhhcccc
Confidence 345566789999999999999999999774 6899999988433 2334466788888899999999999999876443
Q ss_pred -------eeEEEEeccCCCHHHHHh-ccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCC-CCcE
Q 001275 891 -------GIIMYRYMENGSLRDVLH-SITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDS-EMEP 961 (1109)
Q Consensus 891 -------~~lv~e~~~~gsL~~~l~-~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~-~~~~ 961 (1109)
.++||||+++ ++.+.+. .......+++..+..++.|++.|++|||. ++.+|+||||||+||+++. ++.+
T Consensus 94 ~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~-~~~~ivH~Dlkp~NIll~~~~~~~ 171 (360)
T 3e3p_A 94 RDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHL-PSVNVCHRDIKPHNVLVNEADGTL 171 (360)
T ss_dssp SCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTS-TTTCCBCSCCCGGGEEEETTTTEE
T ss_pred ccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhC-CCCCeecCcCCHHHEEEeCCCCcE
Confidence 7899999987 5544433 22334568899999999999999999993 3678999999999999996 8999
Q ss_pred EEecccCCcccCCCCCCceeeecccCcccccccccccCC-CCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHH
Q 001275 962 HISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTA-KSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRS 1040 (1109)
Q Consensus 962 kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~ 1040 (1109)
||+|||+++....... .....||+.|+|||++.+.. ++.++|||||||++|||++|+.||..... ........+.
T Consensus 172 kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~-~~~~~~~~~~ 247 (360)
T 3e3p_A 172 KLCDFGSAKKLSPSEP---NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNS-AGQLHEIVRV 247 (360)
T ss_dssp EECCCTTCBCCCTTSC---CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHH
T ss_pred EEeeCCCceecCCCCC---cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCCh-HHHHHHHHHH
Confidence 9999999987654322 23457899999999887654 89999999999999999999999975422 1222222222
Q ss_pred hhcCccccccccchh-----h-------hHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1041 VWSDTEEINDIVDLS-----L-------MEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1041 ~~~~~~~~~~~~d~~-----~-------~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
............++. . ..............++.+++.+|++.||++|||+.|+++|-+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~ 317 (360)
T 3e3p_A 248 LGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPY 317 (360)
T ss_dssp HCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGG
T ss_pred cCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCcc
Confidence 111110000000000 0 000001111123456778889999999999999999999854
No 254
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.2e-35 Score=339.28 Aligned_cols=337 Identities=17% Similarity=0.160 Sum_probs=225.1
Q ss_pred CCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceE
Q 001275 357 QLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQL 436 (1109)
Q Consensus 357 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L 436 (1109)
.+++++.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35788888888888886555556778888888888888877667777888888888888888877777777777777777
Q ss_pred EecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCC
Q 001275 437 DFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISG 516 (1109)
Q Consensus 437 ~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~ 516 (1109)
++++|.++...+..+..+++|++|++++|++.+..|..+..+++|+.|++++|++++.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------- 180 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------------------- 180 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----------------------
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----------------------
Confidence 7777777744444456677777777777777665555555555555555555544432
Q ss_pred CCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCCccccc
Q 001275 517 AIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRS 596 (1109)
Q Consensus 517 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 596 (1109)
.++.+++|+.|++++|.+++. ....+|++|++++|+++.. |... .++|+.|++++|++++. ..+..
T Consensus 181 ----~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 181 ----DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp ----CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECCC--CSSCCEEECCSSCCCCC--GGGGG
T ss_pred ----ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-cccc--cccccEEECCCCCCccc--HHHcC
Confidence 133444555555555555421 2223455555555555532 3222 25666666666666642 45666
Q ss_pred ccccceeccccccccCCCcchhhhhhhhhhhhcccCcCCCCCCCCchhhhhhhhhhcccccccccccCcchhhcccCCeE
Q 001275 597 WKSLSILKLSENHFTGGIPTFISELEKLLELQLGGNQLGGEIPPSIGALQDLSYALNLSKNGLTGRIPSDLEKLSKLEQL 676 (1109)
Q Consensus 597 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~l~~l~~~L~L~~N~l~g~ip~~l~~l~~L~~L 676 (1109)
+++|+.|+|++|.+++..|..+..+++|+.|+|++|+++ .+|..++.+++| ..|+|++|+++ .+|..++.+++|++|
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L-~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL-KVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTC-CEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCC-CEEECCCCcce-ecCccccccCcCCEE
Confidence 666666666666666666666666677777777777766 356666667777 46888888888 678888999999999
Q ss_pred EccCCcccccCCCCCccccceEEeeeccccccccchhhhhccCCCCCCCCCCCccccccc
Q 001275 677 DISSNNLTGTLSPLSNIHSLVEVNVSYNLFTGPVPETLMNLLGPSPSSFSGNPSLCVKCL 736 (1109)
Q Consensus 677 ~Ls~N~l~g~~~~l~~~~~l~~l~~~~n~l~g~~p~~~~~~~~~~~~~~~gn~~~c~~~~ 736 (1109)
+|++|++++. | +..+++|+.|++++|++++.-...+... .....+.+++..|..+.
T Consensus 324 ~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~~~~~~~~--~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 324 YLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNSLRALFRN--VARPAVDDADQHCKIDY 379 (390)
T ss_dssp ECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHHHHHHTTT--CCTTTBCCCCSCCCTTC
T ss_pred ECCCCcccee-C-chhhccCCEEEcCCCCccchhHHHHHHH--HHhhcccccCceecccc
Confidence 9999999854 3 6778899999999999987543322222 24455777877786443
No 255
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=7.1e-36 Score=343.42 Aligned_cols=267 Identities=21% Similarity=0.246 Sum_probs=183.5
Q ss_pred hhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEecC------C
Q 001275 818 TENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRK------D 889 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~ 889 (1109)
.++|...+.||+|+||.||+|.. .+|+.||||++.... .......+.+|++++++++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 36788899999999999999975 568999999985432 223456788999999999999999999998754 4
Q ss_pred ceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCC
Q 001275 890 CGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIA 969 (1109)
Q Consensus 890 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla 969 (1109)
..++|+||+ +++|.++++. ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG~a 179 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKC----QKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLA 179 (367)
T ss_dssp CCEEEEECC-CEECC---------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC----
T ss_pred eEEEEeccc-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeecccc
Confidence 579999999 6899998865 24899999999999999999999 899999999999999999999999999999
Q ss_pred cccCCCCCCceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccc-
Q 001275 970 KLLDKSPASTTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEE- 1047 (1109)
Q Consensus 970 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~- 1047 (1109)
+..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||..... ...+.............
T Consensus 180 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~l~~i~~~~g~p~~~~ 253 (367)
T 2fst_X 180 RHTADE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH-IDQLKLILRLVGTPGAEL 253 (367)
T ss_dssp ----------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCSCCHHH
T ss_pred cccccc-----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHH
Confidence 865432 234579999999999877 6789999999999999999999999965321 11122222111111100
Q ss_pred cccccchhhhHH----------hhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1048 INDIVDLSLMEE----------MLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1048 ~~~~~d~~~~~~----------~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
...+........ ............+.+++.+|++.||++|||++|+++|-.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp~ 314 (367)
T 2fst_X 254 LKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAY 314 (367)
T ss_dssp HTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred HHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcChh
Confidence 011100000000 000000111245677888999999999999999999854
No 256
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=4.3e-35 Score=362.19 Aligned_cols=252 Identities=22% Similarity=0.284 Sum_probs=204.6
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecc--cccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCceeE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRG--HKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 893 (1109)
.++|+..++||+|+||+||+|+.. +++.||||++.... .......+..|..++..+ +||+|+++++++.+.+..|+
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~l 419 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 419 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEE
T ss_pred ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEE
Confidence 467899999999999999999765 57889999986432 234456788999999988 79999999999999999999
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
||||+++|+|.++++..+ .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+...
T Consensus 420 V~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~ 493 (674)
T 3pfq_A 420 VMEYVNGGDLMYHIQQVG---RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI 493 (674)
T ss_dssp EEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTCEECC
T ss_pred EEeCcCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeecceeeccc
Confidence 999999999999998754 3899999999999999999999 8899999999999999999999999999998643
Q ss_pred CCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVD 1053 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1053 (1109)
.... ......||+.|+|||++.+..++.++|||||||++|||++|+.||..... ................
T Consensus 494 ~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~-----~~~~~~i~~~~~~~p~--- 563 (674)
T 3pfq_A 494 WDGV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE-----DELFQSIMEHNVAYPK--- 563 (674)
T ss_dssp CTTC--CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHSSCCCCCT---
T ss_pred cCCc--ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH-----HHHHHHHHhCCCCCCc---
Confidence 3222 23346899999999999999999999999999999999999999965321 1222222211111100
Q ss_pred hhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCH-----HHHHHHhh
Q 001275 1054 LSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNM-----RDVVRQLV 1098 (1109)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~-----~evl~~L~ 1098 (1109)
....++.+++.+|++.||++||++ +|+++|-.
T Consensus 564 -------------~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h~f 600 (674)
T 3pfq_A 564 -------------SMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAF 600 (674)
T ss_dssp -------------TSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSSGG
T ss_pred -------------cCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcCcc
Confidence 112345667789999999999997 88887643
No 257
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=344.14 Aligned_cols=278 Identities=22% Similarity=0.321 Sum_probs=187.0
Q ss_pred hCCCC-CceeecccCeEEEEEEeC---CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEec--CCcee
Q 001275 819 ENLNA-KHVIGRGAHGIVYKASLG---PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLR--KDCGI 892 (1109)
Q Consensus 819 ~~~~~-~~~lG~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~ 892 (1109)
+.|.+ .++||+|+||+||+|+.. +++.||||++... .....+.+|++++++++||||+++++++.. ....+
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 96 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT---GISMSACREIALLRELKHPNVISLQKVFLSHADRKVW 96 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSS---SCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC---CCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEE
Confidence 34555 457999999999999865 5789999988432 234578899999999999999999999954 66789
Q ss_pred EEEEeccCCCHHHHHhccC------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee----CCCCcEE
Q 001275 893 IMYRYMENGSLRDVLHSIT------PPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL----DSEMEPH 962 (1109)
Q Consensus 893 lv~e~~~~gsL~~~l~~~~------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll----~~~~~~k 962 (1109)
+||||+++ +|.+++.... ....+++..++.++.|++.||+||| +.+|+||||||+||++ +.++.+|
T Consensus 97 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~k 172 (405)
T 3rgf_A 97 LLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVK 172 (405)
T ss_dssp EEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTTTTCEE
T ss_pred EEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCCCCcEE
Confidence 99999975 8888775321 1234899999999999999999999 8899999999999999 6778999
Q ss_pred EecccCCcccCCCCCC-ceeeecccCcccccccccccC-CCCccCcchhhHHHHHHHHhCCCCCCCCcccc--------c
Q 001275 963 ISDFGIAKLLDKSPAS-TTSISVVGTIGYIAPENAFTT-AKSKESDVYSYGVVLLELITRKKALDPSYKER--------T 1032 (1109)
Q Consensus 963 l~DfGla~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwSlGvil~elltg~~p~~~~~~~~--------~ 1032 (1109)
|+|||+++........ .......||+.|+|||++.+. .++.++||||+||++|||++|+.||....... .
T Consensus 173 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~ 252 (405)
T 3rgf_A 173 IADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHD 252 (405)
T ss_dssp ECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHH
T ss_pred EEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHH
Confidence 9999999876543211 223346899999999998874 58999999999999999999999996542210 1
Q ss_pred cHHHHHHHhhcCccc-cccc---cchh-hhHHh-------------hhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHH
Q 001275 1033 DIVGWVRSVWSDTEE-INDI---VDLS-LMEEM-------------LVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVV 1094 (1109)
Q Consensus 1033 ~~~~~~~~~~~~~~~-~~~~---~d~~-~~~~~-------------~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl 1094 (1109)
.+...+......... ...+ .+.. ..... ..........++.+++.+|++.||++|||++|++
T Consensus 253 ~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L 332 (405)
T 3rgf_A 253 QLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAM 332 (405)
T ss_dssp HHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred HHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 111111111111000 0000 0000 00000 0000000123567788899999999999999999
Q ss_pred HHhhhCCCC
Q 001275 1095 RQLVDASVP 1103 (1109)
Q Consensus 1095 ~~L~~~~~~ 1103 (1109)
+|-+-...+
T Consensus 333 ~hp~f~~~~ 341 (405)
T 3rgf_A 333 QDPYFLEDP 341 (405)
T ss_dssp TSGGGTSSS
T ss_pred cChhhccCC
Confidence 998765433
No 258
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=5.7e-36 Score=345.92 Aligned_cols=255 Identities=10% Similarity=0.044 Sum_probs=178.5
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc--ccChHHHHHHH---HHHhcCCCCceeeEe-------eEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH--KRGSLSMKREI---QTIGKIRHRNLVRLE-------DFW 885 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~~E~---~~l~~l~h~niv~l~-------~~~ 885 (1109)
.+|...+.||+|+||+||+|... +++.||||++..... ......+.+|+ +.++. +||||++++ +++
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehhe
Confidence 45788899999999999999864 789999999965432 23345677785 45555 799988754 444
Q ss_pred ecC-----------------CceeEEEEeccCCCHHHHHhccCCCCCCCHHHH------HHHHHHHHHHHHHhhcCCCCC
Q 001275 886 LRK-----------------DCGIIMYRYMENGSLRDVLHSITPPPTLEWNVR------YKIALGAAHALAYLHYDCDPP 942 (1109)
Q Consensus 886 ~~~-----------------~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~------~~i~~~i~~~L~~LH~~~~~~ 942 (1109)
... ...++||||++ |+|.++++.... .+.+..+ ..++.|+++||+||| +.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~--~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~ 214 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF--VYVFRGDEGILALHILTAQLIRLAANLQ---SKG 214 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTT
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc--ccchhhhhhhhhHHHHHHHHHHHHHHHH---HCC
Confidence 332 23799999999 899999986432 2344455 778899999999999 899
Q ss_pred eEEeccCCCCeeeCCCCcEEEecccCCcccCCCCCCceeeecccCccccccccccc--CCCCccCcchhhHHHHHHHHhC
Q 001275 943 IVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFT--TAKSKESDVYSYGVVLLELITR 1020 (1109)
Q Consensus 943 ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDvwSlGvil~elltg 1020 (1109)
|+||||||+|||++.++.+||+|||+++..... .....+|+.|+|||++.+ ..++.++|||||||++|||++|
T Consensus 215 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg 289 (371)
T 3q60_A 215 LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR-----GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCL 289 (371)
T ss_dssp EEETTCSGGGEEECTTSCEEECCGGGEEETTCE-----EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHS
T ss_pred CccCcCCHHHEEECCCCCEEEEecceeeecCCC-----ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhC
Confidence 999999999999999999999999999865321 113567799999999987 7789999999999999999999
Q ss_pred CCCCCCCccccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1021 KKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1021 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
+.||.......... +.... .......... .........++.+++.+||+.||++||+++|+++|-
T Consensus 290 ~~Pf~~~~~~~~~~-------~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp 354 (371)
T 3q60_A 290 FLPFGLVTPGIKGS-------WKRPS-LRVPGTDSLA----FGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETP 354 (371)
T ss_dssp SCSTTBCCTTCTTC-------CCBCC-TTSCCCCSCC----CTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSH
T ss_pred CCCCCCcCcccccc-------hhhhh-hhhccccccc----hhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCH
Confidence 99996542221100 00000 0000000000 000011234566788899999999999999998753
No 259
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=5.1e-36 Score=334.17 Aligned_cols=258 Identities=24% Similarity=0.326 Sum_probs=194.7
Q ss_pred hCCCCCceeecccCeEEEEEEeC--CCc--EEEEEEeeecc--cccChHHHHHHHHHHhcCCCCceeeEeeEEecCCcee
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG--PNA--VFAVKKLAFRG--HKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGI 892 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~--~~~--~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 892 (1109)
++|++.+.||+|+||+||+|++. +++ .||||++.... .......+.+|++++++++||||+++++++...+ .+
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~ 96 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK 96 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence 57888999999999999999753 333 68999885432 2334567899999999999999999999998654 88
Q ss_pred EEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCccc
Q 001275 893 IMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLL 972 (1109)
Q Consensus 893 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~ 972 (1109)
+|+||+++|+|.+++.... ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 97 ~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~ 171 (291)
T 1u46_A 97 MVTELAPLGSLLDRLRKHQ--GHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRAL 171 (291)
T ss_dssp EEEECCTTCBHHHHHHHHG--GGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred eeEecccCCCHHHHHHhcc--CCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCCCEEEccccccccc
Confidence 9999999999999997642 24889999999999999999999 889999999999999999999999999999877
Q ss_pred CCCCCCc-eeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCcccccc
Q 001275 973 DKSPAST-TSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEIND 1050 (1109)
Q Consensus 973 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1109)
....... ......+|..|+|||.+.+..++.++||||+|+++|||++ |+.||...... ..............
T Consensus 172 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-----~~~~~~~~~~~~~~- 245 (291)
T 1u46_A 172 PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS-----QILHKIDKEGERLP- 245 (291)
T ss_dssp CC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-----HHHHHHHTSCCCCC-
T ss_pred cccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHH-----HHHHHHHccCCCCC-
Confidence 5433221 1223567889999999998889999999999999999999 99998654211 11111111110000
Q ss_pred ccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCC
Q 001275 1051 IVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDAS 1101 (1109)
Q Consensus 1051 ~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 1101 (1109)
. ......++.+++.+||+.||++||+++|++++|+++.
T Consensus 246 --~-----------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~ 283 (291)
T 1u46_A 246 --R-----------PEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQ 283 (291)
T ss_dssp --C-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred --C-----------CcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhC
Confidence 0 0112234667888999999999999999999999874
No 260
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=3.6e-35 Score=333.10 Aligned_cols=273 Identities=23% Similarity=0.317 Sum_probs=201.8
Q ss_pred HhhCCCCCceeecccCeEEEEEEe--CCCcEEEEEEeeecccc-cChHHHHHHHHHHhcC---CCCceeeEeeEEe----
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASL--GPNAVFAVKKLAFRGHK-RGSLSMKREIQTIGKI---RHRNLVRLEDFWL---- 886 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~--~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l---~h~niv~l~~~~~---- 886 (1109)
+.++|.+.+.||+|+||+||+|.. .+++.||+|++...... .....+.+|+.+++++ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 457899999999999999999987 46889999998654332 2334567788777766 8999999999987
Q ss_pred -cCCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEec
Q 001275 887 -RKDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISD 965 (1109)
Q Consensus 887 -~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~D 965 (1109)
.....++||||++ |+|.+++.... ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~kl~D 163 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVP-EPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLAD 163 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSC-TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECS
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEEEec
Confidence 4567899999998 69999998654 234899999999999999999999 88999999999999999999999999
Q ss_pred ccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcC-
Q 001275 966 FGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSD- 1044 (1109)
Q Consensus 966 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~- 1044 (1109)
||+++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .............
T Consensus 164 fg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~i~~~~~~~~ 239 (326)
T 1blx_A 164 FGLARIYSFQ---MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV-DQLGKILDVIGLPG 239 (326)
T ss_dssp CCSCCCCCGG---GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCC
T ss_pred CcccccccCC---CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHH-HHHHHHHHHcCCCC
Confidence 9999865432 1223457899999999999999999999999999999999999999754221 1111111111000
Q ss_pred ccccccccc-hhh-----hHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1045 TEEINDIVD-LSL-----MEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1045 ~~~~~~~~d-~~~-----~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
......... +.. ...............+.+++.+||+.||++||+++|+++|-+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~ 299 (326)
T 1blx_A 240 EEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPY 299 (326)
T ss_dssp GGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGG
T ss_pred cccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcCcc
Confidence 000000000 000 000000001112344667888999999999999999998643
No 261
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=3.1e-35 Score=331.58 Aligned_cols=255 Identities=22% Similarity=0.309 Sum_probs=194.9
Q ss_pred hhCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCC--CCceeeEeeEEecCCceeEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIR--HRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~lv 894 (1109)
.++|.+.+.||+|+||.||+|...+++.||||++..... ......+.+|++++++++ |+||+++++++...+..++|
T Consensus 27 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 106 (313)
T 3cek_A 27 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 106 (313)
T ss_dssp TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEE
T ss_pred cceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEE
Confidence 467888999999999999999988899999999855432 334567899999999997 59999999999999999999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
|| +.+++|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+||+++ ++.+||+|||+++....
T Consensus 107 ~e-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~~~ 178 (313)
T 3cek_A 107 ME-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP 178 (313)
T ss_dssp EC-CCSEEHHHHHHHCS---SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCC---
T ss_pred Ee-cCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEE-CCeEEEeeccccccccC
Confidence 99 56789999998643 4889999999999999999999 88999999999999996 48999999999987654
Q ss_pred CCCCceeeecccCccccccccccc-----------CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhc
Q 001275 975 SPASTTSISVVGTIGYIAPENAFT-----------TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWS 1043 (1109)
Q Consensus 975 ~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~ 1043 (1109)
...........||+.|+|||.+.+ ..++.++||||||+++|||++|+.||........ .......
T Consensus 179 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~----~~~~~~~ 254 (313)
T 3cek_A 179 DTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS----KLHAIID 254 (313)
T ss_dssp -----------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHH----HHHHHHC
T ss_pred ccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHH----HHHHHHh
Confidence 433223334579999999998865 4678899999999999999999999965422211 1111111
Q ss_pred CccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1044 DTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1044 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
..... .. .... ..++.+++.+||+.||++||+++|++++-+
T Consensus 255 ~~~~~-~~----------~~~~---~~~l~~li~~~l~~dp~~Rps~~ell~h~~ 295 (313)
T 3cek_A 255 PNHEI-EF----------PDIP---EKDLQDVLKCCLKRDPKQRISIPELLAHPY 295 (313)
T ss_dssp TTSCC-CC----------CCCS---CHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred ccccc-CC----------cccc---hHHHHHHHHHHccCCcccCcCHHHHhcCcc
Confidence 10000 00 0001 234667888999999999999999998754
No 262
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=2.8e-35 Score=330.10 Aligned_cols=255 Identities=21% Similarity=0.279 Sum_probs=196.8
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
.++|++.+.||+|+||+||+|... +++.||+|++... .......+.+|++++++++||||+++++++...+..++|||
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 96 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETK-SEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE 96 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC-----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCC-CHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence 467889999999999999999875 5889999988543 34456788999999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSP 976 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~ 976 (1109)
|+++++|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 97 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~- 170 (302)
T 2j7t_A 97 FCPGGAVDAIMLELD--RGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT- 170 (302)
T ss_dssp CCTTEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH-
T ss_pred eCCCCcHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCcccccc-
Confidence 999999999987633 34899999999999999999999 889999999999999999999999999987543211
Q ss_pred CCceeeecccCccccccccc-----ccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccc
Q 001275 977 ASTTSISVVGTIGYIAPENA-----FTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDI 1051 (1109)
Q Consensus 977 ~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1109)
........||+.|+|||++ .+..++.++||||+|+++|+|++|+.||...... ........... ...
T Consensus 171 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~~~~--~~~ 242 (302)
T 2j7t_A 171 -LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPM-----RVLLKIAKSDP--PTL 242 (302)
T ss_dssp -HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHH-----HHHHHHHHSCC--CCC
T ss_pred -ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHH-----HHHHHHhccCC--ccc
Confidence 1111235789999999987 3667899999999999999999999998643211 11111111000 000
Q ss_pred cchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1052 VDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1052 ~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.. ......++.+++.+|++.||++||+++|+++|-+
T Consensus 243 ~~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~ 278 (302)
T 2j7t_A 243 LT-----------PSKWSVEFRDFLKIALDKNPETRPSAAQLLEHPF 278 (302)
T ss_dssp SS-----------GGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTSTT
T ss_pred CC-----------ccccCHHHHHHHHHHcccChhhCCCHHHHhcChH
Confidence 00 0111234667888999999999999999998754
No 263
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.3e-36 Score=338.35 Aligned_cols=257 Identities=21% Similarity=0.315 Sum_probs=195.4
Q ss_pred HHHhhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEEec-----
Q 001275 815 IEATENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLR----- 887 (1109)
Q Consensus 815 ~~~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~----- 887 (1109)
....++|++.+.||+|+||.||+|+. .+++.||||++... ......+.+|+.+++++ +||||+++++++..
T Consensus 20 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~ 97 (326)
T 2x7f_A 20 RDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT--GDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPG 97 (326)
T ss_dssp CCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--SSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--C
T ss_pred cCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecC--cccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCcc
Confidence 34567899999999999999999977 46899999998543 33456789999999999 89999999999976
Q ss_pred -CCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecc
Q 001275 888 -KDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDF 966 (1109)
Q Consensus 888 -~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~Df 966 (1109)
.+..++||||+++|+|.+++.... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+||
T Consensus 98 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~kl~Df 173 (326)
T 2x7f_A 98 MDDQLWLVMEFCGAGSVTDLIKNTK-GNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDF 173 (326)
T ss_dssp CCCEEEEEEECCTTEEHHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCC
T ss_pred ccceEEEEEEcCCCCcHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHEEEcCCCCEEEeeC
Confidence 457899999999999999998643 235889999999999999999999 889999999999999999999999999
Q ss_pred cCCcccCCCCCCceeeecccCcccccccccc-----cCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHh
Q 001275 967 GIAKLLDKSPASTTSISVVGTIGYIAPENAF-----TTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSV 1041 (1109)
Q Consensus 967 Gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~ 1041 (1109)
|++....... .......||+.|+|||++. +..++.++||||+||++|+|++|+.||...... .....+
T Consensus 174 g~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~--- 246 (326)
T 2x7f_A 174 GVSAQLDRTV--GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM--RALFLI--- 246 (326)
T ss_dssp TTTC---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHH---
T ss_pred cCceecCcCc--cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHH--HHHHHh---
Confidence 9998664322 1223357899999999887 567899999999999999999999998643211 111000
Q ss_pred hcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1042 WSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1042 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.... ...... ... ...+.+++.+||+.||++||+++|+++|-.
T Consensus 247 ~~~~--~~~~~~---------~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~hp~ 289 (326)
T 2x7f_A 247 PRNP--APRLKS---------KKW---SKKFQSFIESCLVKNHSQRPATEQLMKHPF 289 (326)
T ss_dssp HHSC--CCCCSC---------SCS---CHHHHHHHHHHCCSSGGGSCCHHHHHTSHH
T ss_pred hcCc--cccCCc---------ccc---CHHHHHHHHHHhccChhhCCCHHHHhhChH
Confidence 0000 000000 011 234566788999999999999999998643
No 264
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=7.6e-35 Score=340.10 Aligned_cols=268 Identities=20% Similarity=0.235 Sum_probs=200.2
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCC--------CCceeeEeeEEe---
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIR--------HRNLVRLEDFWL--- 886 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~l~~~~~--- 886 (1109)
++|.+.++||+|+||+||+|.. .+++.||||++.. .......+.+|++++++++ |+||+++++++.
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~--~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKS--AEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS--CHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEec--CCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 6788999999999999999975 5688999999842 2334567889999999985 788999999987
Q ss_pred -cCCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeEEeccCCCCeeeCCCC-----
Q 001275 887 -RKDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDP-PIVHRDIKPENILLDSEM----- 959 (1109)
Q Consensus 887 -~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~-~ivH~Dlk~~NIll~~~~----- 959 (1109)
.....++||||+ +|++.+++.... ...+++..++.++.|++.||+||| +. +|+||||||+|||++.++
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~lH---~~~givHrDikp~NIll~~~~~~~~~ 189 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWIIKSN-YQGLPLPCVKKIIQQVLQGLDYLH---TKCRIIHTDIKPENILLSVNEQYIRR 189 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECCCCSGGGEEECCCHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCCHHHeeEeccchhhhh
Confidence 556789999999 567777665432 235899999999999999999999 77 999999999999999775
Q ss_pred --------------------------------------------cEEEecccCCcccCCCCCCceeeecccCcccccccc
Q 001275 960 --------------------------------------------EPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPEN 995 (1109)
Q Consensus 960 --------------------------------------------~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~ 995 (1109)
.+||+|||+++..... .....||+.|+|||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aPE~ 264 (397)
T 1wak_A 190 LAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRSLEV 264 (397)
T ss_dssp HHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCCHHH
T ss_pred hhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccCChh
Confidence 7999999999876432 123478999999999
Q ss_pred cccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccc----cHHHHHHHhhcCc------------------cccccccc
Q 001275 996 AFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERT----DIVGWVRSVWSDT------------------EEINDIVD 1053 (1109)
Q Consensus 996 ~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~----~~~~~~~~~~~~~------------------~~~~~~~d 1053 (1109)
+.+..++.++|||||||++|||++|+.||.+...... +....+....... .....+.+
T Consensus 265 ~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (397)
T 1wak_A 265 LIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITK 344 (397)
T ss_dssp HHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCC
T ss_pred hcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccc
Confidence 9999999999999999999999999999976432211 1111111111000 00000000
Q ss_pred ---hhhhHH--hhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1054 ---LSLMEE--MLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1054 ---~~~~~~--~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
...... ...........++.+++.+||+.||++|||++|+++|-+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~ 394 (397)
T 1wak_A 345 LKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 394 (397)
T ss_dssp CCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTSGG
T ss_pred cCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhCcc
Confidence 000000 001112345567888999999999999999999998743
No 265
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=2.4e-35 Score=363.26 Aligned_cols=256 Identities=23% Similarity=0.306 Sum_probs=200.8
Q ss_pred hhCCCCCceeecccCeEEEEEEeC----CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG----PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 893 (1109)
.++|...+.||+|+||+||+|.+. .+..||+|++...........+.+|+.++++++||||+++++++. .+..++
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~l 467 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI 467 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEE
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceEE
Confidence 367888899999999999999764 246799998855444444567899999999999999999999985 466899
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
||||+++|+|.++++... ..+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 468 v~E~~~~g~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~ 542 (656)
T 2j0j_A 468 IMELCTLGELRSFLQVRK--FSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 542 (656)
T ss_dssp EEECCTTCBHHHHHHHTT--TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCC
T ss_pred EEEcCCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCCCCEEEEecCCCeecC
Confidence 999999999999998643 34899999999999999999999 8899999999999999999999999999998765
Q ss_pred CCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCcccccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEEINDIV 1052 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1109)
.... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... .+....+.... ....
T Consensus 543 ~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~--~~~~~~i~~~~--~~~~---- 613 (656)
T 2j0j_A 543 DSTY-YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN--NDVIGRIENGE--RLPM---- 613 (656)
T ss_dssp C-----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHHHHHHHTC--CCCC----
T ss_pred CCcc-eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHHcCC--CCCC----
Confidence 4322 22233467889999999999999999999999999999997 8888864321 11111111100 0000
Q ss_pred chhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1053 DLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1053 d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
.......+.+++.+||+.||++||+++|+++.|+++
T Consensus 614 ------------~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~i 649 (656)
T 2j0j_A 614 ------------PPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 649 (656)
T ss_dssp ------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ------------CccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 011223566788899999999999999999999875
No 266
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=1e-34 Score=324.92 Aligned_cols=255 Identities=27% Similarity=0.370 Sum_probs=201.8
Q ss_pred hhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc--------ccChHHHHHHHHHHhcCC-CCceeeEeeEEec
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH--------KRGSLSMKREIQTIGKIR-HRNLVRLEDFWLR 887 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~ 887 (1109)
.++|...+.||+|+||.||+|... +++.||||++..... ......+.+|+++++++. ||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 468899999999999999999775 689999999854321 112346789999999995 9999999999999
Q ss_pred CCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEeccc
Q 001275 888 KDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFG 967 (1109)
Q Consensus 888 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfG 967 (1109)
.+..++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||
T Consensus 96 ~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg 169 (298)
T 1phk_A 96 NTFFFLVFDLMKKGELFDYLTEKV---TLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFG 169 (298)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred CCeEEEEEeccCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEEeccc
Confidence 999999999999999999997643 4899999999999999999999 8899999999999999999999999999
Q ss_pred CCcccCCCCCCceeeecccCcccccccccc------cCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHh
Q 001275 968 IAKLLDKSPASTTSISVVGTIGYIAPENAF------TTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSV 1041 (1109)
Q Consensus 968 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~ 1041 (1109)
++........ .....||+.|+|||++. ...++.++||||+|+++|||++|+.||...... .. ....
T Consensus 170 ~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~---~~~~ 241 (298)
T 1phk_A 170 FSCQLDPGEK---LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQM--LM---LRMI 241 (298)
T ss_dssp TCEECCTTCC---BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HH---HHHH
T ss_pred chhhcCCCcc---cccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHH--HH---HHHH
Confidence 9987654322 23357899999999875 456789999999999999999999998643211 11 1111
Q ss_pred hcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1042 WSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1042 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
....... ..+ .......++.+++.+|++.||++||+++|+++|-.
T Consensus 242 ~~~~~~~---~~~---------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~ 286 (298)
T 1phk_A 242 MSGNYQF---GSP---------EWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPF 286 (298)
T ss_dssp HHTCCCC---CTT---------TGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGG
T ss_pred hcCCccc---Ccc---------cccccCHHHHHHHHHHccCCcccCCCHHHHHhChH
Confidence 1110000 000 01112334667888999999999999999998654
No 267
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=6.1e-35 Score=327.32 Aligned_cols=257 Identities=26% Similarity=0.406 Sum_probs=192.2
Q ss_pred HhhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEec--------
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLR-------- 887 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-------- 887 (1109)
..++|+..+.||+|+||+||+|+. .+++.||||++... ......+.+|++++++++||||+++++++.+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~ 81 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT--EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPM 81 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC--
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc--HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhh
Confidence 346789999999999999999976 47899999998532 3345678899999999999999999998865
Q ss_pred -----CCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEE
Q 001275 888 -----KDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPH 962 (1109)
Q Consensus 888 -----~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~k 962 (1109)
.+..++||||+++|+|.++++... ..+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+|
T Consensus 82 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlkp~Nil~~~~~~~k 156 (303)
T 1zy4_A 82 TAVKKKSTLFIQMEYCENGTLYDLIHSEN--LNQQRDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVK 156 (303)
T ss_dssp ----CEEEEEEEEECCCSCBHHHHHHHSC--GGGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEE
T ss_pred cccccCCceEEEEecCCCCCHHHhhhccc--cccchHHHHHHHHHHHHHHHHHH---hCCeecccCCHHhEEEcCCCCEE
Confidence 356799999999999999998633 34788999999999999999999 88999999999999999999999
Q ss_pred EecccCCcccCCCCC------------CceeeecccCcccccccccccC-CCCccCcchhhHHHHHHHHhCCCCCCCCcc
Q 001275 963 ISDFGIAKLLDKSPA------------STTSISVVGTIGYIAPENAFTT-AKSKESDVYSYGVVLLELITRKKALDPSYK 1029 (1109)
Q Consensus 963 l~DfGla~~~~~~~~------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwSlGvil~elltg~~p~~~~~~ 1029 (1109)
|+|||+++....... ........||+.|+|||++.+. .++.++||||+||++|||++ ||.....
T Consensus 157 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~ 233 (303)
T 1zy4_A 157 IGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGME 233 (303)
T ss_dssp ECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHH
T ss_pred EeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchh
Confidence 999999986643211 1122345789999999998764 68999999999999999998 4432211
Q ss_pred ccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1030 ERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
................. .. .......+.+++.+|++.||++||+++|+++|-+-
T Consensus 234 ----~~~~~~~~~~~~~~~~~----~~--------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~ 287 (303)
T 1zy4_A 234 ----RVNILKKLRSVSIEFPP----DF--------DDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWL 287 (303)
T ss_dssp ----HHHHHHHHHSTTCCCCT----TC--------CTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHSSCS
T ss_pred ----HHHHHHhccccccccCc----cc--------cccchHHHHHHHHHHHhcCcccCcCHHHHhCCCCc
Confidence 11111111111100000 00 11122345678889999999999999999987543
No 268
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=7.2e-35 Score=336.43 Aligned_cols=265 Identities=19% Similarity=0.239 Sum_probs=196.5
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCce-----
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCG----- 891 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 891 (1109)
++|...+.||+|+||+||+|... +++.||||++..... ......+.+|+.++++++||||+++++++...+..
T Consensus 42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 121 (371)
T 4exu_A 42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD 121 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCC
T ss_pred ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCccccee
Confidence 57888999999999999999764 689999999854322 22346788999999999999999999999877654
Q ss_pred -eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 892 -IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 892 -~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
++||||++ |+|.+++.. .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 122 ~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~ 192 (371)
T 4exu_A 122 FYLVMPFMQ-TDLQKIMGM-----EFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLAR 192 (371)
T ss_dssp CEEEEECCC-EEHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTTCC-
T ss_pred EEEEEcccc-ccHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecCccc
Confidence 99999998 588887743 3899999999999999999999 8899999999999999999999999999998
Q ss_pred ccCCCCCCceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccc
Q 001275 971 LLDKSPASTTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEIN 1049 (1109)
Q Consensus 971 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1109)
..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||..... ...+...............
T Consensus 193 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~~~i~~~~~~~~~~~~ 266 (371)
T 4exu_A 193 HADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY-LDQLTQILKVTGVPGTEFV 266 (371)
T ss_dssp ------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCCCCHHHH
T ss_pred ccccC-----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHhCCCcHHHH
Confidence 65432 233578999999999887 6789999999999999999999999965321 1112222111111111000
Q ss_pred cccchhhhHHh----h-------hchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1050 DIVDLSLMEEM----L-------VSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1050 ~~~d~~~~~~~----~-------~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
..+........ . .........++.+++.+|++.||++|||++|+++|-+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~ 326 (371)
T 4exu_A 267 QKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPF 326 (371)
T ss_dssp TTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGG
T ss_pred HHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcCcc
Confidence 00000000000 0 0000112346777888999999999999999999854
No 269
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=1.4e-34 Score=329.94 Aligned_cols=265 Identities=20% Similarity=0.266 Sum_probs=201.0
Q ss_pred hCCCCCceeecccCeEEEEEEe--CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCC------ceeeEeeEEecCCc
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL--GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHR------NLVRLEDFWLRKDC 890 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~------niv~l~~~~~~~~~ 890 (1109)
++|++.+.||+|+||+||+|.. .+++.||||++.. .......+.+|++++++++|+ +++++++++...+.
T Consensus 14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~--~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKN--VDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECS--SHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEec--CCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 5788999999999999999976 3688999999843 223346788999999988665 49999999999999
Q ss_pred eeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCC-------------
Q 001275 891 GIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDS------------- 957 (1109)
Q Consensus 891 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~------------- 957 (1109)
.++||||+ +++|.+++.... ...+++..+..++.|+++||+||| +.+|+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~ 166 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKENG-FLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPKIKR 166 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC----C
T ss_pred EEEEEcCC-CCCHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCcccc
Confidence 99999999 889999997643 235889999999999999999999 889999999999999987
Q ss_pred ------CCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCcccc
Q 001275 958 ------EMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKER 1031 (1109)
Q Consensus 958 ------~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~ 1031 (1109)
++.+||+|||+++...... ....||+.|+|||++.+..++.++||||+||++|||++|+.||......
T Consensus 167 ~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~- 240 (339)
T 1z57_A 167 DERTLINPDIKVVDFGSATYDDEHH-----STLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSK- 240 (339)
T ss_dssp EEEEESCCCEEECCCSSCEETTSCC-----CSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHH-
T ss_pred ccccccCCCceEeeCcccccCcccc-----ccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChH-
Confidence 6689999999998654322 2357899999999999999999999999999999999999999654221
Q ss_pred ccHHHHHHHhhcC-cccc------cc--------ccchhhhH----H------hhhchhHHHHHHHHHHHHhccCCCCCC
Q 001275 1032 TDIVGWVRSVWSD-TEEI------ND--------IVDLSLME----E------MLVSSIRDQVIDVLLVALRCTEKKPSN 1086 (1109)
Q Consensus 1032 ~~~~~~~~~~~~~-~~~~------~~--------~~d~~~~~----~------~~~~~~~~~~~~l~~l~~~cl~~dP~~ 1086 (1109)
+....+...... .... .. ........ . ...........++.+++.+|++.||++
T Consensus 241 -~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~ 319 (339)
T 1z57_A 241 -EHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAK 319 (339)
T ss_dssp -HHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTT
T ss_pred -HHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccc
Confidence 111111111100 0000 00 00000000 0 000011234567888999999999999
Q ss_pred CCCHHHHHHHh
Q 001275 1087 RPNMRDVVRQL 1097 (1109)
Q Consensus 1087 RPs~~evl~~L 1097 (1109)
|||++|+++|-
T Consensus 320 Rpt~~ell~hp 330 (339)
T 1z57_A 320 RITLREALKHP 330 (339)
T ss_dssp SCCHHHHTTSG
T ss_pred ccCHHHHhcCH
Confidence 99999999873
No 270
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=3.4e-35 Score=333.38 Aligned_cols=257 Identities=25% Similarity=0.320 Sum_probs=177.9
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHH-HHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQ-TIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
++|...+.||+|+||.||+|... +++.||||++..........++.+|+. +++.++||||+++++++...+..++|||
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e 101 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICME 101 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEe
Confidence 57888999999999999999774 689999999965544444455666666 7777899999999999999999999999
Q ss_pred eccCCCHHHHHhcc--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeEEeccCCCCeeeCCCCcEEEecccCCcccC
Q 001275 897 YMENGSLRDVLHSI--TPPPTLEWNVRYKIALGAAHALAYLHYDCDP-PIVHRDIKPENILLDSEMEPHISDFGIAKLLD 973 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~--~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~-~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~ 973 (1109)
|+++ +|.+++... .....+++..+..++.|+++|++||| +. +|+||||||+||+++.++.+||+|||+++...
T Consensus 102 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~ 177 (327)
T 3aln_A 102 LMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK---ENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLV 177 (327)
T ss_dssp CCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH---HHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC--
T ss_pred ecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh---ccCCEeECCCCHHHEEEcCCCCEEEccCCCceecc
Confidence 9985 888877531 12345899999999999999999999 77 99999999999999999999999999998664
Q ss_pred CCCCCceeeecccCccccccccc----ccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccc
Q 001275 974 KSPASTTSISVVGTIGYIAPENA----FTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEIN 1049 (1109)
Q Consensus 974 ~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1109)
.... .....||+.|+|||++ .+..++.++||||||+++|||++|+.||........ ......... ..
T Consensus 178 ~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~----~~~~~~~~~--~~ 248 (327)
T 3aln_A 178 DSIA---KTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFD----QLTQVVKGD--PP 248 (327)
T ss_dssp -------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-----------CCCCCSC--CC
T ss_pred cccc---cccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHH----HHHHHhcCC--CC
Confidence 3321 2234799999999998 466789999999999999999999999864321110 000000000 00
Q ss_pred cccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1050 DIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1050 ~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
.+ . . ........++.+++.+||+.||++||+++|++++-
T Consensus 249 ~~-~----~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp 287 (327)
T 3aln_A 249 QL-S----N----SEEREFSPSFINFVNLCLTKDESKRPKYKELLKHP 287 (327)
T ss_dssp CC-C----C----CSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSH
T ss_pred CC-C----C----cccccCCHHHHHHHHHHhhCChhhCcCHHHHHhCh
Confidence 00 0 0 00011223567788899999999999999998754
No 271
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=2.2e-34 Score=320.29 Aligned_cols=255 Identities=25% Similarity=0.342 Sum_probs=201.8
Q ss_pred HHhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeE
Q 001275 816 EATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 816 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 893 (1109)
...++|++.+.||+|+||+||+|... +++.||+|++..... ......+.+|++++++++||||+++++++...+..++
T Consensus 19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 98 (287)
T 2wei_A 19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYI 98 (287)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEE
Confidence 34578999999999999999999775 689999999865432 3456689999999999999999999999999999999
Q ss_pred EEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCC---CcEEEecccCCc
Q 001275 894 MYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSE---MEPHISDFGIAK 970 (1109)
Q Consensus 894 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~---~~~kl~DfGla~ 970 (1109)
|+||+++++|.+++.... .+++..++.++.|++.||+||| +.+|+||||||+||+++.+ +.+||+|||++.
T Consensus 99 v~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~ 172 (287)
T 2wei_A 99 VGELYTGGELFDEIIKRK---RFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLST 172 (287)
T ss_dssp EECCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGG
T ss_pred EEEccCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCcce
Confidence 999999999999887643 3899999999999999999999 8899999999999999754 469999999998
Q ss_pred ccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccc
Q 001275 971 LLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEIND 1050 (1109)
Q Consensus 971 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1109)
....... .....||+.|+|||.+.+ .++.++||||+|+++|+|++|+.||..... .+....+.. .....
T Consensus 173 ~~~~~~~---~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~~---~~~~~-- 241 (287)
T 2wei_A 173 CFQQNTK---MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE--YDILKRVET---GKYAF-- 241 (287)
T ss_dssp TBCCCSS---CSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHH---CCCCC--
T ss_pred eecCCCc---cccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCH--HHHHHHHHc---CCCCC--
Confidence 6644322 223468999999998765 489999999999999999999999865321 111111111 10000
Q ss_pred ccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1051 IVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1051 ~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
+.. .......++.+++.+|++.||++||+++|++++-
T Consensus 242 --~~~--------~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp 278 (287)
T 2wei_A 242 --DLP--------QWRTISDDAKDLIRKMLTFHPSLRITATQCLEHP 278 (287)
T ss_dssp --CSG--------GGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSH
T ss_pred --Cch--------hhhhcCHHHHHHHHHHcccChhhCcCHHHHhcCH
Confidence 000 0011123466788899999999999999999853
No 272
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=334.70 Aligned_cols=258 Identities=21% Similarity=0.300 Sum_probs=196.9
Q ss_pred hhCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
.++|.+.+.||+|+||+||+|.... .||+|++..... ......+.+|+.++++++||||+++++++...+..++|||
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e 109 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITS 109 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECB
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEee
Confidence 4678899999999999999998764 489998854432 2334567889999999999999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSP 976 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~ 976 (1109)
|+++++|.+++.... ..+++..++.++.|+++||+||| +.+|+||||||+||+++ ++.+||+|||+++......
T Consensus 110 ~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~ 183 (319)
T 2y4i_B 110 LCKGRTLYSVVRDAK--IVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQ 183 (319)
T ss_dssp CCCSEEHHHHTTSSC--CCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC---CCEECCCSCCC------
T ss_pred cccCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEe-CCCEEEeecCCcccccccc
Confidence 999999999997643 35889999999999999999999 88999999999999998 6799999999987653221
Q ss_pred ---CCceeeecccCccccccccccc---------CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcC
Q 001275 977 ---ASTTSISVVGTIGYIAPENAFT---------TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSD 1044 (1109)
Q Consensus 977 ---~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1044 (1109)
.........||+.|+|||++.+ ..++.++||||||+++|||++|+.||...... .........
T Consensus 184 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-----~~~~~~~~~ 258 (319)
T 2y4i_B 184 AGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAE-----AIIWQMGTG 258 (319)
T ss_dssp ----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHH-----HHHHHHHTT
T ss_pred ccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-----HHHHHhccC
Confidence 1122233568999999998864 45788999999999999999999999653221 111111111
Q ss_pred ccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhCCC
Q 001275 1045 TEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDASV 1102 (1109)
Q Consensus 1045 ~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 1102 (1109)
.. ...... ....++.+++.+||+.||++||+++|+++.|+++..
T Consensus 259 ~~--~~~~~~------------~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~ 302 (319)
T 2y4i_B 259 MK--PNLSQI------------GMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPK 302 (319)
T ss_dssp CC--CCCCCS------------SCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC--
T ss_pred CC--CCCCcC------------CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence 00 000000 011235668889999999999999999999998744
No 273
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=8.5e-35 Score=328.94 Aligned_cols=270 Identities=19% Similarity=0.298 Sum_probs=191.6
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEe-----------
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWL----------- 886 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~----------- 886 (1109)
.+|...+.||+|+||.||+|... +++.||+|++... .......+.+|++++++++||||+++++++.
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT-DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC-SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC-ChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 57888999999999999999776 4899999988533 3344567899999999999999999999874
Q ss_pred ---cCCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeC-CCCcEE
Q 001275 887 ---RKDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLD-SEMEPH 962 (1109)
Q Consensus 887 ---~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~-~~~~~k 962 (1109)
.....++||||++ |+|.+++.. ..+++..+..++.|+++||+||| +.+|+||||||+||+++ +++.+|
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~k 161 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQ----GPLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLVLK 161 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTTEEE
T ss_pred cccccCceeEEeeccC-CCHHHHhhc----CCccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCeEE
Confidence 3456799999998 699999864 24889999999999999999999 88999999999999997 567999
Q ss_pred EecccCCcccCCCCC-CceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHH
Q 001275 963 ISDFGIAKLLDKSPA-STTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRS 1040 (1109)
Q Consensus 963 l~DfGla~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~ 1040 (1109)
|+|||+++....... ........+|..|+|||.+.+ ..++.++||||||+++|||++|+.||...... .........
T Consensus 162 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~-~~~~~~~~~ 240 (320)
T 2i6l_A 162 IGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHEL-EQMQLILES 240 (320)
T ss_dssp ECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHH
T ss_pred EccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHh
Confidence 999999987643211 112233567999999998765 67899999999999999999999999754321 111111111
Q ss_pred hhcCc-cccc---cccchhhhHHhh------hchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1041 VWSDT-EEIN---DIVDLSLMEEML------VSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1041 ~~~~~-~~~~---~~~d~~~~~~~~------~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
..... .... ..+......... .........++.+++.+|++.||++||+++|+++|-.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~ 308 (320)
T 2i6l_A 241 IPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPY 308 (320)
T ss_dssp SCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTSHH
T ss_pred cCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCCcc
Confidence 00000 0000 000000000000 0000112345777888999999999999999998643
No 274
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=9.2e-35 Score=330.72 Aligned_cols=255 Identities=21% Similarity=0.253 Sum_probs=171.8
Q ss_pred hhCCCCC-ceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEec----CCce
Q 001275 818 TENLNAK-HVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLR----KDCG 891 (1109)
Q Consensus 818 ~~~~~~~-~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~ 891 (1109)
.++|.+. ++||+|+||+||+|... +++.||||++... .....+....++.++||||+++++++.. ....
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 101 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCL 101 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-----HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence 4678874 46999999999999775 6899999998431 2222233344566799999999999876 4457
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCC---CCcEEEecccC
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDS---EMEPHISDFGI 968 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~---~~~~kl~DfGl 968 (1109)
++||||+++|+|.+++.... ...+++..++.++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||+
T Consensus 102 ~lv~e~~~gg~L~~~l~~~~-~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~ 177 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQERG-DQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGF 177 (336)
T ss_dssp EEEEECCTTEEHHHHHHTC--CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred EEEEeccCCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEecccc
Confidence 99999999999999998643 245899999999999999999999 889999999999999976 45599999999
Q ss_pred CcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccc
Q 001275 969 AKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEI 1048 (1109)
Q Consensus 969 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1109)
++...... .....||+.|+|||++.+..++.++||||+|+++|+|++|+.||......... ............
T Consensus 178 ~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~-~~~~~~~~~~~~-- 250 (336)
T 3fhr_A 178 AKETTQNA----LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAIS-PGMKRRIRLGQY-- 250 (336)
T ss_dssp CEEC--------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC------------------------
T ss_pred ceeccccc----cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhh-hhHHHhhhcccc--
Confidence 98664322 22357899999999998888999999999999999999999999654221110 000000000000
Q ss_pred ccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1049 NDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1049 ~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.. . .........++.+++.+|++.||++|||++|+++|-+
T Consensus 251 -~~-~--------~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~ 290 (336)
T 3fhr_A 251 -GF-P--------NPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPW 290 (336)
T ss_dssp -CC-C--------TTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSHH
T ss_pred -cc-C--------chhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcCcc
Confidence 00 0 0001112334667888999999999999999999654
No 275
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=4.3e-34 Score=331.40 Aligned_cols=201 Identities=23% Similarity=0.313 Sum_probs=169.8
Q ss_pred HhhCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCC-CC-----ceeeEeeEEecCC
Q 001275 817 ATENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIR-HR-----NLVRLEDFWLRKD 889 (1109)
Q Consensus 817 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l~~~~~~~~ 889 (1109)
..++|.+.+.||+|+||+||+|... +++.||||++.. .......+.+|+++++.++ |+ +|+++++++...+
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~--~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~ 129 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKN--KKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN 129 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECS--SHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEec--cHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC
Confidence 3578999999999999999999765 678999999843 2233456778888888874 44 4999999999999
Q ss_pred ceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeC--CCCcEEEeccc
Q 001275 890 CGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLD--SEMEPHISDFG 967 (1109)
Q Consensus 890 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~--~~~~~kl~DfG 967 (1109)
..++||||++ |+|.+++.... ...+++..+..++.|++.||+|||.. +.+|+||||||+||+++ .++.+||+|||
T Consensus 130 ~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG 206 (382)
T 2vx3_A 130 HLCLVFEMLS-YNLYDLLRNTN-FRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFG 206 (382)
T ss_dssp EEEEEEECCC-CBHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCT
T ss_pred ceEEEEecCC-CCHHHHHhhcC-cCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEecc
Confidence 9999999996 59999998643 23489999999999999999999931 46899999999999995 47789999999
Q ss_pred CCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCC
Q 001275 968 IAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPS 1027 (1109)
Q Consensus 968 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~ 1027 (1109)
+++...... ....||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 207 ~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 207 SSCQLGQRI-----YQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp TCEETTCCC-----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred Cceeccccc-----ccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 998764321 2357899999999999999999999999999999999999999754
No 276
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.1e-33 Score=321.54 Aligned_cols=307 Identities=23% Similarity=0.324 Sum_probs=170.0
Q ss_pred ccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccc
Q 001275 91 IGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQ 170 (1109)
Q Consensus 91 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 170 (1109)
+.++++|++|++++|.+.. +| .++.+++|++|++++|++++. |. +.++++|++|+|++|.++. +| .+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 3456777777777777763 34 377777777777777777743 33 7777777777777777763 33 466666777
Q ss_pred eecccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcc
Q 001275 171 YVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNN 250 (1109)
Q Consensus 171 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 250 (1109)
+|++++|++++..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|+
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 77777776664322 6666666666666665443333 36666666666666666654433 5556666666666665
Q ss_pred cCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCc
Q 001275 251 LEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPE 330 (1109)
Q Consensus 251 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 330 (1109)
+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+++. +.
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 554332 4445555555555555543322 4444555555555555543222 44444555555555544432 23
Q ss_pred cccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCC
Q 001275 331 LGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLK 410 (1109)
Q Consensus 331 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 410 (1109)
+..+++|++|++++|++++. ..+..+++|+.|++++|.+++..|..+..+++|+
T Consensus 261 ------------------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 261 ------------------------VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp ------------------------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred ------------------------HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 44444455555555544432 2344445555555555555444444555555555
Q ss_pred eEEccCCcCcccCCccccCCCCCceEEecCCccc
Q 001275 411 NISLYNNQFSGVIPQSLGINSSLMQLDFINNSFT 444 (1109)
Q Consensus 411 ~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~ 444 (1109)
.|++++|++++..| +..+++|++||+++|.|+
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 55555555554433 444555555555555543
No 277
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.1e-34 Score=328.37 Aligned_cols=283 Identities=20% Similarity=0.219 Sum_probs=214.6
Q ss_pred hccCChhhHHHHHHHHHhccCCCCcccCCCC---CCCCCCceeeeEEecC--------CCCcEEEEEecccCCccccCCc
Q 001275 22 SVNALNGDGVALLSLMRHWNSVPPLIISSWN---SSDSTPCQWVGIECDD--------DAHNVVSFNLSSYGVSGQLGPE 90 (1109)
Q Consensus 22 ~~~~~~~~~~all~~~~~~~~~~~~~l~sW~---~~~~~~c~w~gv~C~~--------~~~~v~~l~l~~~~l~~~~~~~ 90 (1109)
...+..+|++||++||+++..++.+.+.+|. ....++|.|.|++|+. ...+|+.|+++++.+. .+|+.
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 3456788999999999999888888889994 3356789999999953 3356777777777766 56666
Q ss_pred ccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccc
Q 001275 91 IGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQ 170 (1109)
Q Consensus 91 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 170 (1109)
++++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..++++++|++|+|++|++.+.+|..+...
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~---- 173 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST---- 173 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE----
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc----
Confidence 777777777777777776 66666777777777777777776 566667777777777777766666666655431
Q ss_pred eecccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcc
Q 001275 171 YVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNN 250 (1109)
Q Consensus 171 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 250 (1109)
..+..++++++|++|+|++|+++ .+|..++++++|++|+|++|++++ +|..+.++++|++|++++|+
T Consensus 174 -----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 174 -----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp -----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCT
T ss_pred -----------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCc
Confidence 11223445777888888888877 677778888888888888888885 45568888888888888888
Q ss_pred cCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCC
Q 001275 251 LEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLS 324 (1109)
Q Consensus 251 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 324 (1109)
+.+.+|..+..+++|++|+|++|.+.+.+|..+.++++|++|++++|++.+.+|..++.+++|+.+++..|.+.
T Consensus 241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888877665
No 278
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=3.8e-35 Score=331.64 Aligned_cols=244 Identities=21% Similarity=0.321 Sum_probs=197.6
Q ss_pred hhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeeccccc-----ChHHHHHHHHHHhcCC--CCceeeEeeEEecCC
Q 001275 818 TENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKR-----GSLSMKREIQTIGKIR--HRNLVRLEDFWLRKD 889 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~-----~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~ 889 (1109)
.++|.+.+.||+|+||+||+|.. .+++.||||++....... ....+.+|+.++++++ |+||+++++++...+
T Consensus 42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~ 121 (320)
T 3a99_A 42 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD 121 (320)
T ss_dssp TTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred cCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCC
Confidence 46788999999999999999975 568999999986543221 2345678999999996 599999999999999
Q ss_pred ceeEEEEeccC-CCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeC-CCCcEEEeccc
Q 001275 890 CGIIMYRYMEN-GSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLD-SEMEPHISDFG 967 (1109)
Q Consensus 890 ~~~lv~e~~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~-~~~~~kl~DfG 967 (1109)
..++|+||+.+ ++|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+||+++ +++.+||+|||
T Consensus 122 ~~~lv~e~~~~~~~L~~~l~~~~---~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg 195 (320)
T 3a99_A 122 SFVLILERPEPVQDLFDFITERG---ALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFG 195 (320)
T ss_dssp EEEEEEECCSSEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCT
T ss_pred cEEEEEEcCCCCccHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCCCCCEEEeeCc
Confidence 99999999986 89999997643 4899999999999999999999 89999999999999998 78899999999
Q ss_pred CCcccCCCCCCceeeecccCcccccccccccCCC-CccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcc
Q 001275 968 IAKLLDKSPASTTSISVVGTIGYIAPENAFTTAK-SKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTE 1046 (1109)
Q Consensus 968 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1109)
+++...... .....||+.|+|||++.+..+ +.++||||||+++|||++|+.||.... .... ...
T Consensus 196 ~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-------~~~~----~~~ 260 (320)
T 3a99_A 196 SGALLKDTV----YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-------EIIR----GQV 260 (320)
T ss_dssp TCEECCSSC----BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HHHH----CCC
T ss_pred ccccccccc----ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh-------hhhc----ccc
Confidence 998765332 223579999999999887776 788999999999999999999985321 0000 000
Q ss_pred ccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1047 EINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1047 ~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
.. . ... ..++.+++.+||+.||++||+++|++++-+
T Consensus 261 ~~----~---------~~~---~~~~~~li~~~l~~dp~~Rps~~~ll~hp~ 296 (320)
T 3a99_A 261 FF----R---------QRV---SSECQHLIRWCLALRPSDRPTFEEIQNHPW 296 (320)
T ss_dssp CC----S---------SCC---CHHHHHHHHHHTCSSGGGSCCHHHHHTSGG
T ss_pred cc----c---------ccC---CHHHHHHHHHHccCChhhCcCHHHHhcCHh
Confidence 00 0 011 234566888999999999999999998754
No 279
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=8.1e-35 Score=342.73 Aligned_cols=254 Identities=24% Similarity=0.313 Sum_probs=185.9
Q ss_pred CCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCceeEEEEec
Q 001275 820 NLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGIIMYRYM 898 (1109)
Q Consensus 820 ~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~ 898 (1109)
.|...++||+|+||+||.+...+|+.||||++... ....+.+|++++.++ +|||||++++++...+..++||||+
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~----~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~ 91 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID----FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC 91 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG----GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCC
T ss_pred eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH----HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecC
Confidence 34456889999999998877778999999998432 234678999999886 8999999999999999999999999
Q ss_pred cCCCHHHHHhccCCCCC----CCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCC-------------CcE
Q 001275 899 ENGSLRDVLHSITPPPT----LEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSE-------------MEP 961 (1109)
Q Consensus 899 ~~gsL~~~l~~~~~~~~----l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~-------------~~~ 961 (1109)
+ |+|.+++........ ..+..++.++.|++.||+||| +.+|+||||||+||+++.+ +.+
T Consensus 92 ~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~ 167 (434)
T 2rio_A 92 N-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRI 167 (434)
T ss_dssp S-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEE
T ss_pred C-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCceEE
Confidence 6 699999986442111 133346789999999999999 8899999999999999654 489
Q ss_pred EEecccCCcccCCCCCC--ceeeecccCccccccccccc-------CCCCccCcchhhHHHHHHHHh-CCCCCCCCcccc
Q 001275 962 HISDFGIAKLLDKSPAS--TTSISVVGTIGYIAPENAFT-------TAKSKESDVYSYGVVLLELIT-RKKALDPSYKER 1031 (1109)
Q Consensus 962 kl~DfGla~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~-------~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~ 1031 (1109)
||+|||+++........ .......||+.|+|||++.+ ..++.++||||+||++|||++ |+.||.......
T Consensus 168 kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~ 247 (434)
T 2rio_A 168 LISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE 247 (434)
T ss_dssp EECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH
T ss_pred EEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH
Confidence 99999999977543221 12234579999999998875 678999999999999999999 899986432221
Q ss_pred ccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1032 TDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
......... ....... .......++.+++.+|++.||++||++.|+++|-
T Consensus 248 ---~~i~~~~~~-~~~~~~~------------~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~hp 297 (434)
T 2rio_A 248 ---SNIIRGIFS-LDEMKCL------------HDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHP 297 (434)
T ss_dssp ---HHHHHTCCC-CCCCTTC------------CCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTSG
T ss_pred ---HHHhcCCCC-ccccccc------------ccccchHHHHHHHHHHhhCChhhCCCHHHHHhCC
Confidence 111111110 0000000 0123345677788899999999999999999864
No 280
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.6e-35 Score=327.75 Aligned_cols=248 Identities=21% Similarity=0.289 Sum_probs=190.7
Q ss_pred HHHhhCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccc-----cChHHHHHHHHHHhcC----CCCceeeEeeE
Q 001275 815 IEATENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHK-----RGSLSMKREIQTIGKI----RHRNLVRLEDF 884 (1109)
Q Consensus 815 ~~~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-----~~~~~~~~E~~~l~~l----~h~niv~l~~~ 884 (1109)
....++|+..+.||+|+||.||+|.. .+++.||||++...... .....+.+|+.++.++ +|+||++++++
T Consensus 27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~ 106 (312)
T 2iwi_A 27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW 106 (312)
T ss_dssp ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence 34457899999999999999999976 46889999998543321 1223456789998888 89999999999
Q ss_pred EecCCceeEEEEe-ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeC-CCCcEE
Q 001275 885 WLRKDCGIIMYRY-MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLD-SEMEPH 962 (1109)
Q Consensus 885 ~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~-~~~~~k 962 (1109)
+...+..++|+|| +++++|.+++.... .+++..++.++.|+++||+||| +.+|+||||||+||+++ +++.+|
T Consensus 107 ~~~~~~~~~v~e~~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~k 180 (312)
T 2iwi_A 107 FETQEGFMLVLERPLPAQDLFDYITEKG---PLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAK 180 (312)
T ss_dssp C-----CEEEEECCSSEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGEEEETTTTEEE
T ss_pred EecCCeEEEEEEecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhEEEeCCCCeEE
Confidence 9999999999999 78999999998644 3899999999999999999999 88999999999999998 889999
Q ss_pred EecccCCcccCCCCCCceeeecccCcccccccccccCCC-CccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHh
Q 001275 963 ISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAK-SKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSV 1041 (1109)
Q Consensus 963 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~ 1041 (1109)
|+|||+++...... .....||..|+|||++.+..+ +.++||||+|+++|||++|+.||.... ....
T Consensus 181 l~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-------~~~~-- 247 (312)
T 2iwi_A 181 LIDFGSGALLHDEP----YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ-------EILE-- 247 (312)
T ss_dssp ECCCSSCEECCSSC----BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HHHH--
T ss_pred EEEcchhhhcccCc----ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH-------HHhh--
Confidence 99999998765432 223579999999998887766 459999999999999999999985321 0000
Q ss_pred hcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhh
Q 001275 1042 WSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVD 1099 (1109)
Q Consensus 1042 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 1099 (1109)
..... . .....++.+++.+||+.||++||+++|++++-.-
T Consensus 248 --~~~~~----~------------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~~~~ 287 (312)
T 2iwi_A 248 --AELHF----P------------AHVSPDCCALIRRCLAPKPSSRPSLEEILLDPWM 287 (312)
T ss_dssp --TCCCC----C------------TTSCHHHHHHHHHHTCSSTTTSCCHHHHHHSTTT
T ss_pred --hccCC----c------------ccCCHHHHHHHHHHccCChhhCcCHHHHhcChhh
Confidence 00000 0 0112345668889999999999999999997653
No 281
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=3.5e-35 Score=354.12 Aligned_cols=266 Identities=24% Similarity=0.271 Sum_probs=198.3
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEec------CCce
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLR------KDCG 891 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~~~ 891 (1109)
.+|.+.++||+|+||+||+|.. .+|+.||||++...........+.+|++++++++||||+++++++.. .+..
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~ 93 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP 93 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence 6899999999999999999976 46899999988654444556678999999999999999999998765 6678
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCc---EEEecccC
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEME---PHISDFGI 968 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~---~kl~DfGl 968 (1109)
++||||+++|+|.+++........+++..++.++.|++.||+||| +.+|+||||||+||+++.++. +||+|||.
T Consensus 94 ~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~ 170 (676)
T 3qa8_A 94 LLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGY 170 (676)
T ss_dssp CCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEECSCCC
T ss_pred EEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEccccc
Confidence 999999999999999987665556889999999999999999999 889999999999999987665 99999999
Q ss_pred CcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcc--
Q 001275 969 AKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTE-- 1046 (1109)
Q Consensus 969 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~-- 1046 (1109)
++....... .....||+.|+|||++.+..++.++||||+||++|||++|+.||.+.... ..|.........
T Consensus 171 a~~~~~~~~---~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~----~~~~~~i~~~~~~~ 243 (676)
T 3qa8_A 171 AKELDQGEL---CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQP----VQWHGKVREKSNEH 243 (676)
T ss_dssp CCBTTSCCC---CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHH----HHSSTTCC------
T ss_pred ccccccccc---cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccch----hhhhhhhhcccchh
Confidence 987654332 23357999999999999999999999999999999999999999754211 111110000000
Q ss_pred -ccccccchhhh--H--HhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHH
Q 001275 1047 -EINDIVDLSLM--E--EMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVV 1094 (1109)
Q Consensus 1047 -~~~~~~d~~~~--~--~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl 1094 (1109)
...+....... . .............+.+++.+|++.||++||+++|++
T Consensus 244 ~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL 296 (676)
T 3qa8_A 244 IVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNP 296 (676)
T ss_dssp CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCC
T ss_pred hhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHh
Confidence 00000000000 0 000001122345677788899999999999998744
No 282
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=329.73 Aligned_cols=265 Identities=19% Similarity=0.247 Sum_probs=194.9
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeeccc-ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCc------
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGH-KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDC------ 890 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------ 890 (1109)
++|...+.||+|+||+||+|.. .+|+.||||++..... ......+.+|+.++++++||||+++++++...+.
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 103 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD 103 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence 5788889999999999999976 4689999999854332 2234578899999999999999999999987654
Q ss_pred eeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 891 GIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 891 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
.++||||++ |+|.+++.. .+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 104 ~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~ 174 (353)
T 3coi_A 104 FYLVMPFMQ-TDLQKIMGL-----KFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLAR 174 (353)
T ss_dssp CEEEEECCS-EEGGGTTTS-----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTTCTT
T ss_pred EEEEecccc-CCHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeeccccc
Confidence 499999998 588777642 3899999999999999999999 8899999999999999999999999999998
Q ss_pred ccCCCCCCceeeecccCccccccccccc-CCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccc-
Q 001275 971 LLDKSPASTTSISVVGTIGYIAPENAFT-TAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEI- 1048 (1109)
Q Consensus 971 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~- 1048 (1109)
..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ..+..............
T Consensus 175 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~ 248 (353)
T 3coi_A 175 HADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYL-DQLTQILKVTGVPGTEFV 248 (353)
T ss_dssp C-------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHH-HHHHHHHHHHCBCCHHHH
T ss_pred CCCCC-----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHHH
Confidence 65322 223578999999998877 67899999999999999999999999653211 11111111111000000
Q ss_pred ccccchhhhH---H-------hhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1049 NDIVDLSLME---E-------MLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1049 ~~~~d~~~~~---~-------~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
..+.+..... . ...........++.+++.+|++.||++||+++|+++|-+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~ 308 (353)
T 3coi_A 249 QKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPF 308 (353)
T ss_dssp TTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGG
T ss_pred HHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcCcc
Confidence 0000000000 0 000001122345677888999999999999999998754
No 283
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.2e-33 Score=319.02 Aligned_cols=307 Identities=22% Similarity=0.323 Sum_probs=218.4
Q ss_pred CCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccc
Q 001275 115 LGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVE 194 (1109)
Q Consensus 115 l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 194 (1109)
+..+++|++|++++|.+.. +| .+..+++|++|+|++|.+++ +|. +..+++|++|++++|.++. + +.+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 4456677777777777663 33 26666667777776666653 332 5555555555555555553 1 2344445555
Q ss_pred eeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhcccccc
Q 001275 195 ALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNR 274 (1109)
Q Consensus 195 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 274 (1109)
+|++++|+++ +..+ +..+++|++|++++|.....++. +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~------------------------~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 114 ELYLNEDNIS------------------------DISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK 166 (347)
T ss_dssp EEECTTSCCC------------------------CCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC
T ss_pred EEECcCCccc------------------------Cchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC
Confidence 5555555444 3322 44455555555555533322222 4555666666666666
Q ss_pred ccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCcc
Q 001275 275 FSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDE 354 (1109)
Q Consensus 275 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 354 (1109)
+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+
T Consensus 167 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 167 VKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred cCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 654332 6677778888888888775433 7788888899999988885543 7888999999999999985443
Q ss_pred ccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCc
Q 001275 355 LGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLM 434 (1109)
Q Consensus 355 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~ 434 (1109)
+..+++|++|++++|++++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++++..|..++.+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 88999999999999999863 4688999999999999999864 4688999999999999999999999999999999
Q ss_pred eEEecCCcccccCCCCcccCccceEEECCCcccc
Q 001275 435 QLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFH 468 (1109)
Q Consensus 435 ~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~ 468 (1109)
+|++++|.+++..| +..+++|+.|++++|+|+
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999999997766 888999999999999986
No 284
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=6.8e-34 Score=329.06 Aligned_cols=269 Identities=19% Similarity=0.234 Sum_probs=199.1
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHHhcCC-----------CCceeeEeeEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIR-----------HRNLVRLEDFWL 886 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~~~~ 886 (1109)
.+|.+.+.||+|+||+||+|.. .+++.||||++.. .......+.+|++++++++ |+||+++++++.
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~--~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRG--DKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS--CHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecC--CccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 5788999999999999999976 5689999999842 2233456889999999886 899999999988
Q ss_pred cCC----ceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeEEeccCCCCeeeC-----
Q 001275 887 RKD----CGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDP-PIVHRDIKPENILLD----- 956 (1109)
Q Consensus 887 ~~~----~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~-~ivH~Dlk~~NIll~----- 956 (1109)
..+ ..++||||+ +++|.+++..... ..+++..+..++.|++.||+||| +. +|+||||||+||+++
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~lH---~~~~ivH~Dikp~NIll~~~~~~ 171 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKKYEH-RGIPLIYVKQISKQLLLGLDYMH---RRCGIIHTDIKPENVLMEIVDSP 171 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHH---HTTCEECSCCSGGGEEEEEEETT
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHHhhc-cCCcHHHHHHHHHHHHHHHHHHH---hcCCEEecCCChHHeEEeccCCC
Confidence 654 679999999 8899999986432 34899999999999999999999 77 999999999999994
Q ss_pred -CCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCcccc----
Q 001275 957 -SEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKER---- 1031 (1109)
Q Consensus 957 -~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~---- 1031 (1109)
..+.+||+|||+++...... ....||+.|+|||++.+..++.++||||+||++|||++|+.||.......
T Consensus 172 ~~~~~~kl~Dfg~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~ 246 (373)
T 1q8y_A 172 ENLIQIKIADLGNACWYDEHY-----TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKD 246 (373)
T ss_dssp TTEEEEEECCCTTCEETTBCC-----CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CH
T ss_pred cCcceEEEcccccccccCCCC-----CCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCCh
Confidence 44589999999998764321 23478999999999999999999999999999999999999997543211
Q ss_pred -ccHHHHHHHhhcC-----------------ccccccccch-----hhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCC
Q 001275 1032 -TDIVGWVRSVWSD-----------------TEEINDIVDL-----SLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRP 1088 (1109)
Q Consensus 1032 -~~~~~~~~~~~~~-----------------~~~~~~~~d~-----~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP 1088 (1109)
..+.......... ......+... ................++.+++.+||+.||++||
T Consensus 247 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp 326 (373)
T 1q8y_A 247 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA 326 (373)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB
T ss_pred HHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccC
Confidence 1111111111000 0000000000 0000000111234566788899999999999999
Q ss_pred CHHHHHHHhhh
Q 001275 1089 NMRDVVRQLVD 1099 (1109)
Q Consensus 1089 s~~evl~~L~~ 1099 (1109)
|++|+++|-+-
T Consensus 327 t~~ell~hp~f 337 (373)
T 1q8y_A 327 DAGGLVNHPWL 337 (373)
T ss_dssp CHHHHHTCGGG
T ss_pred CHHHHhhChhh
Confidence 99999997543
No 285
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=323.61 Aligned_cols=253 Identities=22% Similarity=0.303 Sum_probs=178.2
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeecccccChH-HHHHHHHHHhcCCCCceeeEeeEEecCCceeEEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGHKRGSL-SMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~-~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 896 (1109)
++|...+.||+|+||.||+|... +++.||||++.......... .+.++..+++.++||||+++++++...+..++|||
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e 104 (318)
T 2dyl_A 25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAME 104 (318)
T ss_dssp GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEe
Confidence 57888899999999999999775 68999999986544333333 34455567888899999999999999999999999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDP-PIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~-~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
|+ ++.+..+..... ..+++..+..++.|+++||+||| +. +|+||||||+||+++.++.+||+|||++......
T Consensus 105 ~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~ 178 (318)
T 2dyl_A 105 LM-GTCAEKLKKRMQ--GPIPERILGKMTVAIVKALYYLK---EKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDD 178 (318)
T ss_dssp CC-SEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred cc-CCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHH---hhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCC
Confidence 99 456666554322 34899999999999999999999 74 9999999999999999999999999999766433
Q ss_pred CCCceeeecccCcccccccccc-----cCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccccc
Q 001275 976 PASTTSISVVGTIGYIAPENAF-----TTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEIND 1050 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1109)
.. .....||+.|+|||++. ...++.++||||||+++|||++|+.||......... ...........
T Consensus 179 ~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~----~~~~~~~~~~~-- 249 (318)
T 2dyl_A 179 KA---KDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEV----LTKVLQEEPPL-- 249 (318)
T ss_dssp -----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHH----HHHHHHSCCCC--
T ss_pred cc---ccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHH----HHHHhccCCCC--
Confidence 21 22357999999999884 556789999999999999999999999653222111 11111110000
Q ss_pred ccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1051 IVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1051 ~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
. . .......++.+++.+||+.||.+||+++|+++|-
T Consensus 250 ~-~----------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~ 285 (318)
T 2dyl_A 250 L-P----------GHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEHS 285 (318)
T ss_dssp C-C----------SSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTSH
T ss_pred C-C----------ccCCCCHHHHHHHHHHccCChhHCcCHHHHhhCH
Confidence 0 0 0001123466788899999999999999998764
No 286
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=1.1e-33 Score=324.79 Aligned_cols=266 Identities=19% Similarity=0.261 Sum_probs=199.1
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CC-cEEEEEEeeecccccChHHHHHHHHHHhcCCCCc------eeeEeeEEecCCc
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PN-AVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRN------LVRLEDFWLRKDC 890 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~-~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~~ 890 (1109)
++|++.+.||+|+||+||+|... ++ +.||+|++.. .......+.+|++++++++|++ ++.+++++...+.
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~--~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRN--VGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECS--CHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcc--cccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 67899999999999999999764 34 6899999843 2234557888999999997665 9999999999999
Q ss_pred eeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee---------------
Q 001275 891 GIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL--------------- 955 (1109)
Q Consensus 891 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll--------------- 955 (1109)
.++||||+ ++++.+++.... ...+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~~-~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~ 171 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKENN-FQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHKSC 171 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-CC
T ss_pred EEEEEecc-CCChHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecccccccccccccc
Confidence 99999999 667777776543 235899999999999999999999 8999999999999999
Q ss_pred ----CCCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCcccc
Q 001275 956 ----DSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKER 1031 (1109)
Q Consensus 956 ----~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~ 1031 (1109)
+.++.+||+|||+++...... ....||+.|+|||++.+..++.++||||+||++|||++|+.||......
T Consensus 172 ~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~- 245 (355)
T 2eu9_A 172 EEKSVKNTSIRVADFGSATFDHEHH-----TTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENR- 245 (355)
T ss_dssp CEEEESCCCEEECCCTTCEETTSCC-----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-
T ss_pred cccccCCCcEEEeecCccccccccc-----cCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH-
Confidence 567899999999998654322 2357999999999999999999999999999999999999999754221
Q ss_pred ccHHHHHHHhhcC-cccc-------c------cccch-----hhhHHh------hhchhHHHHHHHHHHHHhccCCCCCC
Q 001275 1032 TDIVGWVRSVWSD-TEEI-------N------DIVDL-----SLMEEM------LVSSIRDQVIDVLLVALRCTEKKPSN 1086 (1109)
Q Consensus 1032 ~~~~~~~~~~~~~-~~~~-------~------~~~d~-----~~~~~~------~~~~~~~~~~~l~~l~~~cl~~dP~~ 1086 (1109)
+....+...... .... . ...+. ...... ..........++.+++.+||+.||++
T Consensus 246 -~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~ 324 (355)
T 2eu9_A 246 -EHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQ 324 (355)
T ss_dssp -HHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTT
T ss_pred -HHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhh
Confidence 111111111100 0000 0 00000 000000 00011233456788999999999999
Q ss_pred CCCHHHHHHHhh
Q 001275 1087 RPNMRDVVRQLV 1098 (1109)
Q Consensus 1087 RPs~~evl~~L~ 1098 (1109)
|||++|+++|-+
T Consensus 325 Rpt~~e~l~hp~ 336 (355)
T 2eu9_A 325 RITLAEALLHPF 336 (355)
T ss_dssp SCCHHHHTTSGG
T ss_pred CcCHHHHhcChh
Confidence 999999997644
No 287
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=336.62 Aligned_cols=251 Identities=24% Similarity=0.304 Sum_probs=184.5
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCceeEEEEe
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~ 897 (1109)
.+|...++||+|+||+||.....+++.||||++.... ...+.+|+++++++ +|||||++++++.+.+..++||||
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~----~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~ 99 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPEC----FSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL 99 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTT----EEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHH----HHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence 4577889999999999776666779999999984322 22356899999999 899999999999999999999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCC-----CCcEEEecccCCccc
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDS-----EMEPHISDFGIAKLL 972 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~-----~~~~kl~DfGla~~~ 972 (1109)
++ |+|.+++..... ...+..+..++.|+++||+||| +.+|+||||||+||+++. ...+||+|||+++..
T Consensus 100 ~~-g~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~ 173 (432)
T 3p23_A 100 CA-ATLQEYVEQKDF--AHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKL 173 (432)
T ss_dssp CS-EEHHHHHHSSSC--CCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC
T ss_pred CC-CCHHHHHHhcCC--CccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeec
Confidence 97 599999976442 2344456789999999999999 889999999999999953 235889999999876
Q ss_pred CCCCCC-ceeeecccCcccccccccc---cCCCCccCcchhhHHHHHHHHh-CCCCCCCCccccccHHHHHHHhhcCccc
Q 001275 973 DKSPAS-TTSISVVGTIGYIAPENAF---TTAKSKESDVYSYGVVLLELIT-RKKALDPSYKERTDIVGWVRSVWSDTEE 1047 (1109)
Q Consensus 973 ~~~~~~-~~~~~~~gt~~y~aPE~~~---~~~~~~~sDvwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1109)
...... .......||+.|+|||++. ...++.++||||+||++|||++ |+.||....... .. ..... ..
T Consensus 174 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~---~~---~~~~~-~~ 246 (432)
T 3p23_A 174 AVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQ---AN---ILLGA-CS 246 (432)
T ss_dssp ------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHH---HH---HHTTC-CC
T ss_pred cCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHH---HH---HHhcc-CC
Confidence 543211 2233467999999999987 4567889999999999999999 888885332111 11 11100 00
Q ss_pred cccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHh
Q 001275 1048 INDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQL 1097 (1109)
Q Consensus 1048 ~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 1097 (1109)
. ....+ .......+.+++.+|++.||++||+++|+++|-
T Consensus 247 ~-~~~~~----------~~~~~~~~~~li~~~L~~dP~~Rps~~evl~hp 285 (432)
T 3p23_A 247 L-DCLHP----------EKHEDVIARELIEKMIAMDPQKRPSAKHVLKHP 285 (432)
T ss_dssp C-TTSCT----------TCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTST
T ss_pred c-cccCc----------cccccHHHHHHHHHHHhCCHhhCCCHHHHHhCc
Confidence 0 00000 012223456788899999999999999999764
No 288
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.4e-33 Score=313.24 Aligned_cols=251 Identities=30% Similarity=0.448 Sum_probs=171.0
Q ss_pred cccEEEcCCCCCCC--CCCCccccccccceeeccC-cccCCCCCccccCCCCccEEEccCccccccCchHHHhhccccee
Q 001275 312 RLSSLDLSENQLSG--KIPPELGKCKYLTVLHLYA-NQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYL 388 (1109)
Q Consensus 312 ~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 388 (1109)
+++.|+|++|.+++ .+|..++++++|++|++++ |.+.+.+|..++.+++|++|+|++|++++.+|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555555 5555666666666666663 66665666666666666666666666666666666666666666
Q ss_pred eccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCC-CCceEEecCCcccccCCCCcccCccceEEECCCccc
Q 001275 389 LVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINS-SLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQF 467 (1109)
Q Consensus 389 ~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~-~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l 467 (1109)
++++|.+++.+|..+..+++|++|++++|++++.+|..++.++ +|++|++++|.+++.+|..+..++ |++|++++|++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 6666666666666677777777777777777767777776666 677777777777777777776665 77777777777
Q ss_pred ccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhh
Q 001275 468 HGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELG 547 (1109)
Q Consensus 468 ~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 547 (1109)
.+.+|..+..+++|+.|++++|++++.+|.+..+++|++|++++|+|++.+|..+..+++|+.|+|++|+++|.+|.. +
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c
Confidence 777777766666666666666666666666666777777777777777777777777777777777777777766665 6
Q ss_pred cccccceeeccccc-ccc
Q 001275 548 NLVSLVTLNISLNH-VEG 564 (1109)
Q Consensus 548 ~l~~L~~L~L~~N~-l~~ 564 (1109)
.+++|+.|++++|. +.|
T Consensus 289 ~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TGGGSCGGGTCSSSEEES
T ss_pred cccccChHHhcCCCCccC
Confidence 67777777777775 443
No 289
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.9e-32 Score=307.29 Aligned_cols=246 Identities=24% Similarity=0.290 Sum_probs=139.0
Q ss_pred CCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecc
Q 001275 95 SKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFL 174 (1109)
Q Consensus 95 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 174 (1109)
++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|+++++|++|+|++|.++ .+|..+.
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---------- 122 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---------- 122 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC----------
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc----------
Confidence 45566666666665555555556666666666666655555555555555666555555555 3443332
Q ss_pred cccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEecccccc--CcCchhcccccccccccccCcccC
Q 001275 175 NNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLM--GFLPESLSNLENLVYLDVGDNNLE 252 (1109)
Q Consensus 175 s~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~~~~l~~l~~L~~L~L~~N~l~ 252 (1109)
++|++|++++|++++..+..|+++++|++|++++|.++ +..+..+..+ +|++|++++|+++
T Consensus 123 ----------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 123 ----------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp ----------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred ----------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 34555555555555444444555555555555555553 2445555555 6666666666665
Q ss_pred CcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccc
Q 001275 253 GRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELG 332 (1109)
Q Consensus 253 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 332 (1109)
+.. ..+ .++|++|++++|++++..+..+..+++|+.|++++|++++..+..++.+++|++|++++|+++ .+|..+.
T Consensus 186 ~l~-~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 GIP-KDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp SCC-SSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred ccC-ccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 422 222 145666666666666555556666666666666666666555556666666666666666666 5555666
Q ss_pred cccccceeeccCcccCCCCCccccCC------CCccEEEccCcccc
Q 001275 333 KCKYLTVLHLYANQLEGEIPDELGQL------SNLQDLELFDNRLT 372 (1109)
Q Consensus 333 ~l~~L~~L~L~~N~l~~~~p~~l~~l------~~L~~L~L~~N~l~ 372 (1109)
.+++|++|++++|++++..+..|... .+|+.|++++|++.
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 66666666666666665444444432 34445555555443
No 290
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.2e-32 Score=307.74 Aligned_cols=288 Identities=20% Similarity=0.261 Sum_probs=181.7
Q ss_pred cccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeecc
Q 001275 312 RLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVY 391 (1109)
Q Consensus 312 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 391 (1109)
+++.+++++|.++ .+|..+. ++|+.|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5666666666665 4444442 455666666666655445555556666666666665555445555555555555555
Q ss_pred CCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccc--c
Q 001275 392 NNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFH--G 469 (1109)
Q Consensus 392 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~--~ 469 (1109)
+|.++ .+ |..+. ++|++|++++|.+++..+..+..+++|++|++++|+++ +
T Consensus 111 ~n~l~-~l------------------------~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 111 KNHLV-EI------------------------PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp SSCCC-SC------------------------CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred CCcCC-cc------------------------Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC
Confidence 55554 23 33222 44555555555554333334445555555555555553 2
Q ss_pred CCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcc
Q 001275 470 PIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNL 549 (1109)
Q Consensus 470 ~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 549 (1109)
..|..+..+ +|+.|++++|++++.+..+. ++|++|++++|++++..|..+..+++|+.|++++|++++..|..++.+
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 445555555 66666666666665433333 577888888888887777788888888888888888887777778888
Q ss_pred cccceeecccccccccCCccccCCCCccEEEecCccccCCCCccccc------ccccceecccccccc--CCCcchhhhh
Q 001275 550 VSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRS------WKSLSILKLSENHFT--GGIPTFISEL 621 (1109)
Q Consensus 550 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~------l~~L~~L~L~~N~l~--~~~p~~~~~l 621 (1109)
++|++|+|++|+++ .+|..+..+++|+.|++++|+|++..+..|.. ...|+.|++++|.+. +..|..+..+
T Consensus 241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 88888888888888 67777888888888888888888665566654 356777888888776 4566677777
Q ss_pred hhhhhhhcccCc
Q 001275 622 EKLLELQLGGNQ 633 (1109)
Q Consensus 622 ~~L~~L~l~~N~ 633 (1109)
++|+.|++++|+
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 777777777764
No 291
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.98 E-value=3e-33 Score=348.44 Aligned_cols=237 Identities=24% Similarity=0.312 Sum_probs=189.2
Q ss_pred hCCCCCceeecccCeEEEEEEeC--CCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCceeeEeeEEecCCc-----e
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG--PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDC-----G 891 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-----~ 891 (1109)
++|.+.++||+|+||+||+|... +++.||||++...........+.+|++++++++||||+++++++...+. .
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 159 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG 159 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence 67899999999999999999875 5899999988654444455678999999999999999999999987665 6
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcc
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKL 971 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~ 971 (1109)
|+||||+++++|.+++.. .+++..++.++.|+++||+||| +.+|+||||||+||+++.+ .+||+|||+++.
T Consensus 160 ~lv~E~~~g~~L~~~~~~-----~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~ 230 (681)
T 2pzi_A 160 YIVMEYVGGQSLKRSKGQ-----KLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVSR 230 (681)
T ss_dssp EEEEECCCCEECC----C-----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred EEEEEeCCCCcHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEecccchh
Confidence 999999999999987754 4899999999999999999999 8899999999999999886 899999999987
Q ss_pred cCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccc
Q 001275 972 LDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDI 1051 (1109)
Q Consensus 972 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1109)
.... ....||++|+|||++.+.. +.++|||||||++|+|++|..|+...... .+
T Consensus 231 ~~~~------~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~-------------------~~ 284 (681)
T 2pzi_A 231 INSF------GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVD-------------------GL 284 (681)
T ss_dssp TTCC------SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECS-------------------SC
T ss_pred cccC------CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccccc-------------------cc
Confidence 6433 2357999999999887654 89999999999999999998877532111 00
Q ss_pred cchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCC-HHHHHHHhh
Q 001275 1052 VDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPN-MRDVVRQLV 1098 (1109)
Q Consensus 1052 ~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-~~evl~~L~ 1098 (1109)
.... ........+.+++.+||+.||++||+ ++++.+.+.
T Consensus 285 ~~~~--------~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~ 324 (681)
T 2pzi_A 285 PEDD--------PVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLT 324 (681)
T ss_dssp CTTC--------HHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHH
T ss_pred cccc--------cccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHH
Confidence 0000 00112245677888999999999996 455555444
No 292
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.9e-31 Score=302.82 Aligned_cols=270 Identities=21% Similarity=0.303 Sum_probs=166.0
Q ss_pred CCceeeeEEecCCCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCC
Q 001275 57 TPCQWVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIP 136 (1109)
Q Consensus 57 ~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 136 (1109)
+.|+|+.+.|+. +++. .+|..+. +.|++|+|++|++++..+..|+++++|++|+|++|++++..|
T Consensus 29 c~c~l~~l~~~~------------~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (330)
T 1xku_A 29 CQCHLRVVQCSD------------LGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93 (330)
T ss_dssp CEEETTEEECTT------------SCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT
T ss_pred CcCCCeEEEecC------------CCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH
Confidence 346677666653 2222 2444332 578888888888887777788888888888888888887778
Q ss_pred ccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeecccccCCC--Ccccccccc
Q 001275 137 DNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSG--TIPESIGNC 214 (1109)
Q Consensus 137 ~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~l 214 (1109)
..|+++++|++|+|++|.++ .+|..+. ++|++|++++|++++..+..++++++|++|++++|.++. ..+..++++
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 170 (330)
T 1xku_A 94 GAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170 (330)
T ss_dssp TTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred HHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence 88888888888888888887 5666554 567777777777666555566666666666666666642 444455555
Q ss_pred cCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEe
Q 001275 215 YRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDI 294 (1109)
Q Consensus 215 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 294 (1109)
++|++|++++|+++.. |..+. ++|++|++++|++++..+..+..+++|+.|++
T Consensus 171 ~~L~~L~l~~n~l~~l-~~~~~--------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 171 KKLSYIRIADTNITTI-PQGLP--------------------------PSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp TTCCEEECCSSCCCSC-CSSCC--------------------------TTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred CCcCEEECCCCccccC-Ccccc--------------------------ccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 5555555555555432 22111 34555555555555444455555555555555
Q ss_pred ecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccC------CCCccEEEccC
Q 001275 295 VGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQ------LSNLQDLELFD 368 (1109)
Q Consensus 295 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~------l~~L~~L~L~~ 368 (1109)
++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.++.|++++
T Consensus 224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeec
Confidence 555555555555555566666666666655 45555555666666666666665444444432 24455555555
Q ss_pred cccc
Q 001275 369 NRLT 372 (1109)
Q Consensus 369 N~l~ 372 (1109)
|.+.
T Consensus 303 N~~~ 306 (330)
T 1xku_A 303 NPVQ 306 (330)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 5543
No 293
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.2e-36 Score=355.67 Aligned_cols=352 Identities=22% Similarity=0.180 Sum_probs=212.8
Q ss_pred CCccEeecCCCcccccCCCC-CCCCCCCcEeeccCccccC----CCCccccccCccceeccccccccccCCccccc-cc-
Q 001275 95 SKLQTIDLSSNNFSGNIPPK-LGNCSALEYLDLSTNGFTG----DIPDNFENLQNLQYLNLYGNLLDGEIPEPLFR-IL- 167 (1109)
Q Consensus 95 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~----~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~-l~- 167 (1109)
++|++|+|++|+++...... +..+++|++|+|++|+++. .++..+..+++|++|+|++|.+++..+..+.. +.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45666666666665433222 5556667777777776663 23455566677777777777665443333322 33
Q ss_pred ---ccceeccccccccc----ccccccCCCcccceeecccccCCCCccccccc-----ccCccEEEeccccccCcC----
Q 001275 168 ---GLQYVFLNNNSLSG----SIPRNVGDLKEVEALWLFSNRLSGTIPESIGN-----CYRLQELYLNENKLMGFL---- 231 (1109)
Q Consensus 168 ---~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~~~---- 231 (1109)
+|++|++++|+++. .++..+..+++|++|+|++|.+++..+..+.. .++|++|+|++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 47777777777663 44666677777777777777766544443332 345777777777776533
Q ss_pred chhcccccccccccccCcccCCccccccc-----CCCCcchhccccccccCC----CCcccccccCCcEEEeecCCCCCc
Q 001275 232 PESLSNLENLVYLDVGDNNLEGRINFGSE-----KCKNLTFLDLSYNRFSGG----ISPNLGNCSSLTHLDIVGSKLTGS 302 (1109)
Q Consensus 232 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 302 (1109)
+..+..+++|++|++++|.+++..+..+. ..++|++|+|++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44555567777777777776644333332 244677777777776653 345555667777777777776643
Q ss_pred C-----CccccccccccEEEcCCCCCCCC----CCCccccccccceeeccCcccCCCCCccccC-----CCCccEEEccC
Q 001275 303 I-----PSSFGLLARLSSLDLSENQLSGK----IPPELGKCKYLTVLHLYANQLEGEIPDELGQ-----LSNLQDLELFD 368 (1109)
Q Consensus 303 ~-----~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~-----l~~L~~L~L~~ 368 (1109)
. +..+..+++|++|++++|++++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2 22223456777777777776643 4555566677777777777665443333332 25677777777
Q ss_pred cccccc----CchHHHhhcccceeeccCCccCCCCchhhhc-----cCCCCeEEccCCcCcc----cCCccccCCCCCce
Q 001275 369 NRLTGE----FPVSIWRIASLEYLLVYNNNLLGKLPLEMTE-----LKQLKNISLYNNQFSG----VIPQSLGINSSLMQ 435 (1109)
Q Consensus 369 N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~----~~p~~~~~~~~L~~ 435 (1109)
|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|++++ .+|..+..+++|++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 777654 3445555677777777777766554444432 4567777777777765 55666666677777
Q ss_pred EEecCCccccc
Q 001275 436 LDFINNSFTGE 446 (1109)
Q Consensus 436 L~ls~N~l~~~ 446 (1109)
||+++|.+++.
T Consensus 403 L~l~~N~i~~~ 413 (461)
T 1z7x_W 403 LDLSNNCLGDA 413 (461)
T ss_dssp EECCSSSCCHH
T ss_pred EECCCCCCCHH
Confidence 77777776643
No 294
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.4e-31 Score=298.00 Aligned_cols=289 Identities=21% Similarity=0.228 Sum_probs=162.8
Q ss_pred CcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeecc
Q 001275 264 NLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLY 343 (1109)
Q Consensus 264 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 343 (1109)
+++.++++++.++ .+|..+. ++++.|++++|++++..+..|+.+++|++|++++|++++..|..|+++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3445555555554 2333332 456666666666665555566666666666666666665556666666666666666
Q ss_pred CcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCC--CCchhhhccCCCCeEEccCCcCcc
Q 001275 344 ANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLG--KLPLEMTELKQLKNISLYNNQFSG 421 (1109)
Q Consensus 344 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~ 421 (1109)
+|+++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|+++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 66666 3444433 566677777776666555566666666666666666642 455666667777777777777663
Q ss_pred cCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCC
Q 001275 422 VIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKN 501 (1109)
Q Consensus 422 ~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~ 501 (1109)
+|..+. ++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|+++
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------- 253 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--------- 253 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS---------
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc---------
Confidence 444332 56666666666666555556666666666666666666554444444444444444444444
Q ss_pred CCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhc------ccccceeecccccccc--cCCccccCC
Q 001275 502 PVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGN------LVSLVTLNISLNHVEG--SLPSQLSKC 573 (1109)
Q Consensus 502 ~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~L~~N~l~~--~~p~~l~~l 573 (1109)
.+|..+..+++|++|++++|++++..+..|.. ..+|+.|++++|.+.. ..|..+..+
T Consensus 254 ---------------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~ 318 (330)
T 1xku_A 254 ---------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318 (330)
T ss_dssp ---------------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred ---------------cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccc
Confidence 34444444444444444444444433333322 2445555555555542 344556666
Q ss_pred CCccEEEecCcc
Q 001275 574 KNLEVFDVSFNL 585 (1109)
Q Consensus 574 ~~L~~L~ls~N~ 585 (1109)
.+++.++|++|+
T Consensus 319 ~~l~~l~L~~N~ 330 (330)
T 1xku_A 319 YVRAAVQLGNYK 330 (330)
T ss_dssp CCGGGEEC----
T ss_pred cceeEEEecccC
Confidence 666666666653
No 295
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.97 E-value=6.4e-32 Score=299.42 Aligned_cols=230 Identities=12% Similarity=0.089 Sum_probs=178.9
Q ss_pred hCCCCCceeecccCeEEEEEEeC-CCcEEEEEEeeeccc--ccChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEEE
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH--KRGSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
++|++.+.||+|+||.||+|... +++.||||++..... ......+.+|++++.+++||||+++++++...+..|+||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 56888999999999999999775 489999999854332 223367899999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||+++++|.++++.. ....++.+++.|+++||+||| +.+|+||||||+||+++.++.+||+++|
T Consensus 111 e~~~g~~L~~~l~~~-----~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~~-------- 174 (286)
T 3uqc_A 111 EWIRGGSLQEVADTS-----PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPA-------- 174 (286)
T ss_dssp ECCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSCC--------
T ss_pred EecCCCCHHHHHhcC-----CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCEEEEecc--------
Confidence 999999999999542 355678899999999999999 8899999999999999999999998543
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchh
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLS 1055 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1055 (1109)
|++ .++.++|||||||++|||++|+.||........ +.. ..........
T Consensus 175 --------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~-~~~-------~~~~~~~~~~-- 223 (286)
T 3uqc_A 175 --------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSG-LAP-------AERDTAGQPI-- 223 (286)
T ss_dssp --------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCC-SEE-------CCBCTTSCBC--
T ss_pred --------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchh-hHH-------HHHHhccCCC--
Confidence 333 367899999999999999999999975432110 000 0000000000
Q ss_pred hhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhhC
Q 001275 1056 LMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLVDA 1100 (1109)
Q Consensus 1056 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 1100 (1109)
...... .....++.+++.+||+.||++| |+.|+++.|+++
T Consensus 224 -~~~~~~---~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~ 263 (286)
T 3uqc_A 224 -EPADID---RDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQA 263 (286)
T ss_dssp -CHHHHC---TTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHH
T ss_pred -Chhhcc---cCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHH
Confidence 000000 1122346678889999999999 999999999885
No 296
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=99.97 E-value=5.3e-32 Score=302.83 Aligned_cols=233 Identities=21% Similarity=0.305 Sum_probs=177.2
Q ss_pred hCCCCC-ceeecccCeEEEEEEe-CCCcEEEEEEeeecccccChHHHHHHHHHH-hcCCCCceeeEeeEEec----CCce
Q 001275 819 ENLNAK-HVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGHKRGSLSMKREIQTI-GKIRHRNLVRLEDFWLR----KDCG 891 (1109)
Q Consensus 819 ~~~~~~-~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~----~~~~ 891 (1109)
++|.+. ++||+|+||.||+|.. .+++.||+|++.. ...+.+|++++ +..+||||+++++++.. ....
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~------~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 90 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 90 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc------cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence 456666 7799999999999976 5689999999842 34677888888 55699999999999876 6678
Q ss_pred eEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCC---CCcEEEecccC
Q 001275 892 IIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDS---EMEPHISDFGI 968 (1109)
Q Consensus 892 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~---~~~~kl~DfGl 968 (1109)
++||||+++|+|.+++.... ...+++..++.++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||+
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~ 166 (299)
T 3m2w_A 91 LIVMECLDGGELFSRIQDRG-DQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGF 166 (299)
T ss_dssp EEEECCCCSCBHHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTT
T ss_pred EEEEeecCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEecccc
Confidence 99999999999999998743 235899999999999999999999 899999999999999998 78899999999
Q ss_pred CcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHhhcCcccc
Q 001275 969 AKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSVWSDTEEI 1048 (1109)
Q Consensus 969 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1109)
+.... +..++.++||||+||++|||++|+.||........ .. ......
T Consensus 167 a~~~~------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~-----~~---~~~~~~ 214 (299)
T 3m2w_A 167 AKETT------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI-----SP---GMKTRI 214 (299)
T ss_dssp CEECT------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC------------C---CSCCSS
T ss_pred ccccc------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh-----hH---HHHHHH
Confidence 87542 13457789999999999999999999964322110 00 000000
Q ss_pred ccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 001275 1049 NDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVVRQLV 1098 (1109)
Q Consensus 1049 ~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 1098 (1109)
... ...... . .......++.+++.+||+.||++||+++|+++|-+
T Consensus 215 ~~~-~~~~~~-~---~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp~ 259 (299)
T 3m2w_A 215 RMG-QYEFPN-P---EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPW 259 (299)
T ss_dssp CTT-CCSSCH-H---HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred hhc-cccCCc-h---hcccCCHHHHHHHHHHcccChhhCCCHHHHhcChh
Confidence 000 000000 0 00112345677888999999999999999998754
No 297
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.2e-35 Score=349.54 Aligned_cols=351 Identities=20% Similarity=0.165 Sum_probs=210.5
Q ss_pred CCCCcEeeccCccccCCCCcc-ccccCccceeccccccccc----cCCcccccccccceecccccccccccccccC-CCc
Q 001275 118 CSALEYLDLSTNGFTGDIPDN-FENLQNLQYLNLYGNLLDG----EIPEPLFRILGLQYVFLNNNSLSGSIPRNVG-DLK 191 (1109)
Q Consensus 118 l~~L~~L~Ls~n~l~~~~p~~-l~~L~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~ 191 (1109)
+++|++|||++|+++...... +..+++|++|+|++|.++. .++..+..+++|++|++++|.++...+..+. .++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 357889999999887543333 7788899999999998874 3456667778888888888888765554432 344
Q ss_pred ----ccceeecccccCCC----CcccccccccCccEEEeccccccCcCchhccc-----ccccccccccCcccCCcc---
Q 001275 192 ----EVEALWLFSNRLSG----TIPESIGNCYRLQELYLNENKLMGFLPESLSN-----LENLVYLDVGDNNLEGRI--- 255 (1109)
Q Consensus 192 ----~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~-----l~~L~~L~L~~N~l~~~~--- 255 (1109)
+|++|+|++|+++. .++..+..+++|++|+|++|.+++..+..+.. .++|++|++++|++++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 58888888888774 45777777888888888888877554444432 456777777777776532
Q ss_pred -cccccCCCCcchhccccccccCCCCccccc-----ccCCcEEEeecCCCCCc----CCccccccccccEEEcCCCCCCC
Q 001275 256 -NFGSEKCKNLTFLDLSYNRFSGGISPNLGN-----CSSLTHLDIVGSKLTGS----IPSSFGLLARLSSLDLSENQLSG 325 (1109)
Q Consensus 256 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~ 325 (1109)
+..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|++++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 344455666777777776665433333321 34666666666666643 34455556666666666666553
Q ss_pred CC-----CCccccccccceeeccCcccCCC----CCccccCCCCccEEEccCccccccCchHHHhh-----cccceeecc
Q 001275 326 KI-----PPELGKCKYLTVLHLYANQLEGE----IPDELGQLSNLQDLELFDNRLTGEFPVSIWRI-----ASLEYLLVY 391 (1109)
Q Consensus 326 ~~-----p~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~l~ 391 (1109)
.. +..+..+++|++|++++|++++. ++..+..+++|++|++++|++++..+..+... ++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 21 11122355666666666666542 34445555666666666666654444444432 456666666
Q ss_pred CCccCCC----CchhhhccCCCCeEEccCCcCcccCCccccC-----CCCCceEEecCCcccc----cCCCCcccCccce
Q 001275 392 NNNLLGK----LPLEMTELKQLKNISLYNNQFSGVIPQSLGI-----NSSLMQLDFINNSFTG----EIPPNLCFGKQLR 458 (1109)
Q Consensus 392 ~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-----~~~L~~L~ls~N~l~~----~~p~~~~~~~~L~ 458 (1109)
+|.+++. ++..+..+++|+.|++++|++++..+..++. .++|++|++++|.+++ .+|..+...++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 6665543 2344445556666666666555443333321 3455555555555554 4444444455555
Q ss_pred EEECCCcccc
Q 001275 459 VLNMGQNQFH 468 (1109)
Q Consensus 459 ~L~L~~N~l~ 468 (1109)
+|++++|+++
T Consensus 402 ~L~l~~N~i~ 411 (461)
T 1z7x_W 402 ELDLSNNCLG 411 (461)
T ss_dssp EEECCSSSCC
T ss_pred EEECCCCCCC
Confidence 5555555554
No 298
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.97 E-value=9.8e-33 Score=322.77 Aligned_cols=243 Identities=18% Similarity=0.185 Sum_probs=176.3
Q ss_pred hCCCCCceeecccCeEEEEEEe-CCCcEEEEEEeeeccc--ccChHHHHHHHHHHhcCCC-Cce---------------e
Q 001275 819 ENLNAKHVIGRGAHGIVYKASL-GPNAVFAVKKLAFRGH--KRGSLSMKREIQTIGKIRH-RNL---------------V 879 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h-~ni---------------v 879 (1109)
++|...++||+|+||+||+|.+ .+|+.||||++..... ....+.+.+|+.+++.++| +|. +
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 157 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence 3466778999999999999975 5789999998853322 2336789999999999987 221 1
Q ss_pred eE------eeEEec-----CCceeEEEEeccCCCHHHHHhcc----CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeE
Q 001275 880 RL------EDFWLR-----KDCGIIMYRYMENGSLRDVLHSI----TPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIV 944 (1109)
Q Consensus 880 ~l------~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~----~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~iv 944 (1109)
.+ ..++.. ....+++|+++ +|+|.++++.. .....+++..++.++.|+++||+||| +.+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ii 233 (413)
T 3dzo_A 158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLV 233 (413)
T ss_dssp ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcc
Confidence 11 111111 12345566654 67999988521 12334788899999999999999999 89999
Q ss_pred EeccCCCCeeeCCCCcEEEecccCCcccCCCCCCceeeecccCccccccccc----------ccCCCCccCcchhhHHHH
Q 001275 945 HRDIKPENILLDSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENA----------FTTAKSKESDVYSYGVVL 1014 (1109)
Q Consensus 945 H~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~sDvwSlGvil 1014 (1109)
||||||+|||++.++.+||+|||+++..... .....| +.|+|||++ .+..++.++|||||||++
T Consensus 234 HrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil 307 (413)
T 3dzo_A 234 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAI 307 (413)
T ss_dssp CSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHH
T ss_pred cCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHH
Confidence 9999999999999999999999999865432 233567 999999998 555678999999999999
Q ss_pred HHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHHHHHHHHHhccCCCCCCCCCHHHHH
Q 001275 1015 LELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVIDVLLVALRCTEKKPSNRPNMRDVV 1094 (1109)
Q Consensus 1015 ~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl 1094 (1109)
|||++|+.||........ ...++... .....++.+++.+||+.||++||++.|++
T Consensus 308 ~elltg~~Pf~~~~~~~~---------------~~~~~~~~----------~~~~~~~~~li~~~l~~dP~~Rpt~~~~l 362 (413)
T 3dzo_A 308 YWIWCADLPNTDDAALGG---------------SEWIFRSC----------KNIPQPVRALLEGFLRYPKEDRLLPLQAM 362 (413)
T ss_dssp HHHHHSSCCCCTTGGGSC---------------SGGGGSSC----------CCCCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred HHHHHCCCCCCCcchhhh---------------HHHHHhhc----------ccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 999999999965322110 00010000 01123466788899999999999988876
Q ss_pred HH
Q 001275 1095 RQ 1096 (1109)
Q Consensus 1095 ~~ 1096 (1109)
++
T Consensus 363 ~~ 364 (413)
T 3dzo_A 363 ET 364 (413)
T ss_dssp TS
T ss_pred hC
Confidence 54
No 299
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.97 E-value=1.2e-32 Score=313.50 Aligned_cols=246 Identities=14% Similarity=0.120 Sum_probs=181.7
Q ss_pred hhCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeeccc-------ccChHHHHHHHHHHhcCC---------CCceeeE
Q 001275 818 TENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGH-------KRGSLSMKREIQTIGKIR---------HRNLVRL 881 (1109)
Q Consensus 818 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~-------~~~~~~~~~E~~~l~~l~---------h~niv~l 881 (1109)
.++|.+.+.||+|+||+||+|+. +++.||||++..... ......+.+|++++++++ |||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 35788899999999999999988 589999999965532 233467889999998886 6666666
Q ss_pred eeEE-----------------ec-------------CCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHH
Q 001275 882 EDFW-----------------LR-------------KDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHA 931 (1109)
Q Consensus 882 ~~~~-----------------~~-------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~ 931 (1109)
.+++ .. .+..++||||+++|++.+.+.. ..+++..+..++.|++.|
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~----~~~~~~~~~~i~~qi~~a 173 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT----KLSSLATAKSILHQLTAS 173 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT----TCCCHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh----cCCCHHHHHHHHHHHHHH
Confidence 6654 22 6788999999999977666643 247999999999999999
Q ss_pred HHHhhcCCCCCeEEeccCCCCeeeCCCC--------------------cEEEecccCCcccCCCCCCceeeecccCcccc
Q 001275 932 LAYLHYDCDPPIVHRDIKPENILLDSEM--------------------EPHISDFGIAKLLDKSPASTTSISVVGTIGYI 991 (1109)
Q Consensus 932 L~~LH~~~~~~ivH~Dlk~~NIll~~~~--------------------~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~ 991 (1109)
|+|||. +.+|+||||||+|||++.++ .+||+|||+|+..... ...||+.|+
T Consensus 174 L~~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-------~~~gt~~y~ 244 (336)
T 2vuw_A 174 LAVAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-------IVVFCDVSM 244 (336)
T ss_dssp HHHHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-------EEECCCCTT
T ss_pred HHHHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-------cEEEeeccc
Confidence 999992 36899999999999999887 8999999999876432 247999999
Q ss_pred cccccccCCCCccCcchhhHHH-HHHHHhCCCCCCCCccccccHHHHHHHhhcCccccccccchhhhHHhhhchhHHHHH
Q 001275 992 APENAFTTAKSKESDVYSYGVV-LLELITRKKALDPSYKERTDIVGWVRSVWSDTEEINDIVDLSLMEEMLVSSIRDQVI 1070 (1109)
Q Consensus 992 aPE~~~~~~~~~~sDvwSlGvi-l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 1070 (1109)
|||++.+.. +.++||||+|++ .+++++|..||... .............. ....... .........
T Consensus 245 aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~----~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~s~ 310 (336)
T 2vuw_A 245 DEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNV----LWLHYLTDKMLKQM-TFKTKCN--------TPAMKQIKR 310 (336)
T ss_dssp CSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH----HHHHHHHHHHHHTC-CCSSCCC--------SHHHHHHHH
T ss_pred ChhhhcCCC-ccceehhhhhCCCCcccccccCCCcch----hhhhHHHHhhhhhh-ccCcccc--------hhhhhhcCH
Confidence 999988766 899999998777 77888998887311 00000011111000 0000000 001223445
Q ss_pred HHHHHHHhccCCCCCCCCCHHHHH-HH
Q 001275 1071 DVLLVALRCTEKKPSNRPNMRDVV-RQ 1096 (1109)
Q Consensus 1071 ~l~~l~~~cl~~dP~~RPs~~evl-~~ 1096 (1109)
++.+++.+|++.| |++|++ +|
T Consensus 311 ~~~dli~~~L~~d-----sa~e~l~~H 332 (336)
T 2vuw_A 311 KIQEFHRTMLNFS-----SATDLLCQH 332 (336)
T ss_dssp HHHHHHHHGGGSS-----SHHHHHHHC
T ss_pred HHHHHHHHHhccC-----CHHHHHhcC
Confidence 6778888999976 999999 76
No 300
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.6e-30 Score=295.25 Aligned_cols=285 Identities=20% Similarity=0.246 Sum_probs=191.9
Q ss_pred CCCceeeeEEecCCCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCC
Q 001275 56 STPCQWVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDI 135 (1109)
Q Consensus 56 ~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 135 (1109)
.++|.|.|+ |+.. +++++ .+|..+. ++|++|++++|++++..+..++++++|++|+|++|++++..
T Consensus 27 ~~~C~~~~~-c~~~----------~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (353)
T 2z80_A 27 SLSCDRNGI-CKGS----------SGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92 (353)
T ss_dssp CCEECTTSE-EECC----------STTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred CCCCCCCeE-eeCC----------CCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC
Confidence 457999888 7643 33333 3555443 47888888888888766668888888888888888888777
Q ss_pred CccccccCccceeccccccccccCCcccccccccceecccccccccccc-cccCCCcccceeecccc-cCCCCccccccc
Q 001275 136 PDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIP-RNVGDLKEVEALWLFSN-RLSGTIPESIGN 213 (1109)
Q Consensus 136 p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~ 213 (1109)
|..|+++++|++|+|++|++++..+..+.++++|++|++++|++++..+ ..++.+++|++|++++| .+++..+..|++
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 7788888888888888888874333346777777777777777774333 36677777777777777 355555566777
Q ss_pred ccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEE
Q 001275 214 CYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLD 293 (1109)
Q Consensus 214 l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 293 (1109)
+++|++|++++|++++..|..|.++++|++|++++|+++......+..+++|++|++++|.+++..+..+..
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-------- 244 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST-------- 244 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------------
T ss_pred CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc--------
Confidence 777777777777777666777777777777777777665444433444556666666666655433322211
Q ss_pred eecCCCCCcCCccccccccccEEEcCCCCCCC----CCCCccccccccceeeccCcccCCCCCcc-ccCCCCccEEEccC
Q 001275 294 IVGSKLTGSIPSSFGLLARLSSLDLSENQLSG----KIPPELGKCKYLTVLHLYANQLEGEIPDE-LGQLSNLQDLELFD 368 (1109)
Q Consensus 294 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~ 368 (1109)
......++.++++++.+++ .+|+.+..+++|+.|++++|+++ .+|.. |..+++|++|++++
T Consensus 245 -------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 245 -------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp ---------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred -------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeC
Confidence 1123445566666666554 35566777778888888888887 44544 57788888888888
Q ss_pred ccccccCc
Q 001275 369 NRLTGEFP 376 (1109)
Q Consensus 369 N~l~~~~~ 376 (1109)
|++++..|
T Consensus 311 N~~~~~~~ 318 (353)
T 2z80_A 311 NPWDCSCP 318 (353)
T ss_dssp SCBCCCHH
T ss_pred CCccCcCC
Confidence 88886544
No 301
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3e-30 Score=289.70 Aligned_cols=254 Identities=20% Similarity=0.235 Sum_probs=154.3
Q ss_pred CCCceeeeEEecCCCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccC--
Q 001275 56 STPCQWVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTG-- 133 (1109)
Q Consensus 56 ~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-- 133 (1109)
.+.|.|.+|.|+... + ..+|..+ .++|++|+|++|+++...+..|+++++|++|+|++|+++.
T Consensus 4 ~C~C~~~~l~c~~~~------------l-~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 68 (306)
T 2z66_A 4 RCSCSGTEIRCNSKG------------L-TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68 (306)
T ss_dssp TCEEETTEEECCSSC------------C-SSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE
T ss_pred CCeeCCCEEEcCCCC------------c-ccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc
Confidence 456899999997532 1 1234333 2578888888888875444457888888888888888773
Q ss_pred CCCccccccCccceeccccccccccCCcccccccccceecccccccccccc-cccCCCcccceeecccccCCCCcccccc
Q 001275 134 DIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIP-RNVGDLKEVEALWLFSNRLSGTIPESIG 212 (1109)
Q Consensus 134 ~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 212 (1109)
..|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..|..|+
T Consensus 69 ~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 147 (306)
T 2z66_A 69 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147 (306)
T ss_dssp EEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT
T ss_pred CcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc
Confidence 23566667778888888888776 456666667777777777777665443 4556666666666666666655555566
Q ss_pred cccCccEEEeccccccC-cCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCCCCcccccccCCcE
Q 001275 213 NCYRLQELYLNENKLMG-FLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTH 291 (1109)
Q Consensus 213 ~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 291 (1109)
++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+. .+..+++|++
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------------------~~~~l~~L~~ 203 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT------------------------AFNSLSSLQV 203 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT------------------------TTTTCTTCCE
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH------------------------HhcCCCCCCE
Confidence 66666666666666554 3455555555555555555555544444 4444445555
Q ss_pred EEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCcccccc-ccceeeccCcccCC
Q 001275 292 LDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCK-YLTVLHLYANQLEG 349 (1109)
Q Consensus 292 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~ 349 (1109)
|++++|++++..+..+..+++|+.|++++|++++..|..+..++ +|++|+|++|.+++
T Consensus 204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred EECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 55555555444444455555555555555555555555555542 55555555555543
No 302
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.6e-31 Score=326.14 Aligned_cols=430 Identities=15% Similarity=0.098 Sum_probs=226.1
Q ss_pred cCCCCCCCCCCCcEeeccCccc---cCCCCcccc------------ccCccceeccccccccccCCcccccc--ccccee
Q 001275 110 NIPPKLGNCSALEYLDLSTNGF---TGDIPDNFE------------NLQNLQYLNLYGNLLDGEIPEPLFRI--LGLQYV 172 (1109)
Q Consensus 110 ~~p~~l~~l~~L~~L~Ls~n~l---~~~~p~~l~------------~L~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L 172 (1109)
.++..+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 3344556788899999987542 134454443 55666666666666655444444443 236666
Q ss_pred cccccc-ccc-ccccccCCCcccceeecccccCCCC----cccccccccCccEEEeccccccCcCchhcccccccccccc
Q 001275 173 FLNNNS-LSG-SIPRNVGDLKEVEALWLFSNRLSGT----IPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDV 246 (1109)
Q Consensus 173 ~Ls~n~-l~~-~~p~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 246 (1109)
+|++|. ++. .++.....+++|++|+|++|.+++. ++..+.++++|++|++++|.+++...
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~-------------- 209 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP-------------- 209 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH--------------
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH--------------
Confidence 665554 111 1111222344555555555544433 22223344444444444444432111
Q ss_pred cCcccCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCC---CcCCccccccccccEEEcCCCCC
Q 001275 247 GDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLT---GSIPSSFGLLARLSSLDLSENQL 323 (1109)
Q Consensus 247 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l 323 (1109)
+..+..+..+++|++|++++|.+.+ ++..+..+++|++|+++++... +..+..+..+++|+.|+++++..
T Consensus 210 ------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 282 (592)
T 3ogk_B 210 ------KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282 (592)
T ss_dssp ------HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT
T ss_pred ------HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch
Confidence 1122223344555555555555553 3445555566666666543222 22334455666677777766533
Q ss_pred CCCCCCccccccccceeeccCcccCCCCC-ccccCCCCccEEEccCccccc-cCchHHHhhcccceeeccC---------
Q 001275 324 SGKIPPELGKCKYLTVLHLYANQLEGEIP-DELGQLSNLQDLELFDNRLTG-EFPVSIWRIASLEYLLVYN--------- 392 (1109)
Q Consensus 324 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~--------- 392 (1109)
. .+|..+..+++|++|+|++|.+++... ..+..+++|++|+++ +.+.+ .++.....+++|++|++++
T Consensus 283 ~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 283 N-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp T-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred h-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence 2 456666667777777777776654332 234567777777777 33332 2333335566777777773
Q ss_pred --CccCCCCc-hhhhccCCCCeEEccCCcCcccCCccccC-CCCCceEEec----CCccccc-----CCCCcccCccceE
Q 001275 393 --NNLLGKLP-LEMTELKQLKNISLYNNQFSGVIPQSLGI-NSSLMQLDFI----NNSFTGE-----IPPNLCFGKQLRV 459 (1109)
Q Consensus 393 --N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~~L~~L~ls----~N~l~~~-----~p~~~~~~~~L~~ 459 (1109)
|.+++... .....+++|+.|+++.|++++..+..++. +++|++|+++ .|.+++. ++..+..+++|+.
T Consensus 361 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~ 440 (592)
T 3ogk_B 361 EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440 (592)
T ss_dssp TTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred ccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence 44443322 22344667777777777776655555553 5666677665 4555532 1112333455555
Q ss_pred EECCCcc--cccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCC-CCCCcccccccccEEeccCC
Q 001275 460 LNMGQNQ--FHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISG-AIPSSIGNSINLTSIDFSSN 536 (1109)
Q Consensus 460 L~L~~N~--l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~-~~p~~~~~l~~L~~L~Ls~N 536 (1109)
|++++|. +++..+..+ ...+++|++|++++|++++ .++..+..+++|++|++++|
T Consensus 441 L~L~~~~~~l~~~~~~~~----------------------~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 441 FAFYLRQGGLTDLGLSYI----------------------GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp EEEECCGGGCCHHHHHHH----------------------HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred EEEecCCCCccHHHHHHH----------------------HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 5554321 322111111 1124567777777777764 23444566677777777777
Q ss_pred cccCC-cchhhhcccccceeecccccccccCCcccc-CCCCccEEEecCc
Q 001275 537 KFSGL-MPQELGNLVSLVTLNISLNHVEGSLPSQLS-KCKNLEVFDVSFN 584 (1109)
Q Consensus 537 ~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~ls~N 584 (1109)
++++. ++..+..+++|++|+|++|++++.-...+. .++.+.+..+..+
T Consensus 499 ~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 499 CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 76644 333445677777777777777754333333 3565655555443
No 303
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.8e-31 Score=328.81 Aligned_cols=450 Identities=15% Similarity=0.133 Sum_probs=261.0
Q ss_pred CceeeeEEecCCCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcc---cccCCCCCC------------CCCCCc
Q 001275 58 PCQWVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNF---SGNIPPKLG------------NCSALE 122 (1109)
Q Consensus 58 ~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l---~~~~p~~l~------------~l~~L~ 122 (1109)
|++|.++.+.. .+ .+.+..+ .....+..+..+++|++|+|+++.. .+.+|..++ .+++|+
T Consensus 41 ck~W~~~~~~~--~~--~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~ 115 (592)
T 3ogk_B 41 CRRWFKIDSET--RE--HVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK 115 (592)
T ss_dssp CHHHHHHHHHH--CC--EEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred hHHHHHhhhcc--cc--EEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCC
Confidence 45799985432 11 2222221 2222334466789999999988542 245665555 789999
Q ss_pred EeeccCccccCCCCcccccc--Cccceecccccc-ccc-cCCcccccccccceecccccccccc----cccccCCCcccc
Q 001275 123 YLDLSTNGFTGDIPDNFENL--QNLQYLNLYGNL-LDG-EIPEPLFRILGLQYVFLNNNSLSGS----IPRNVGDLKEVE 194 (1109)
Q Consensus 123 ~L~Ls~n~l~~~~p~~l~~L--~~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~ 194 (1109)
+|+|++|.+++..+..+... ++|++|+|++|. ++. .++.....+++|++|+|++|.+++. ++..+..+++|+
T Consensus 116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~ 195 (592)
T 3ogk_B 116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195 (592)
T ss_dssp EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCC
T ss_pred eEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCcc
Confidence 99999999987777777764 459999999986 321 1233334788999999999998876 445567789999
Q ss_pred eeecccccCCC----CcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhcc
Q 001275 195 ALWLFSNRLSG----TIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDL 270 (1109)
Q Consensus 195 ~L~L~~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 270 (1109)
+|++++|.+++ .++..+.++++|++|++++|.+.+ ++..+.++++|+.|+++.+......
T Consensus 196 ~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~--------------- 259 (592)
T 3ogk_B 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM--------------- 259 (592)
T ss_dssp EEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC---------------
T ss_pred EEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccch---------------
Confidence 99999999983 344556788999999999999886 6788888999999998764322100
Q ss_pred ccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCC-CccccccccceeeccCcccCC
Q 001275 271 SYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIP-PELGKCKYLTVLHLYANQLEG 349 (1109)
Q Consensus 271 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~ 349 (1109)
+..+..+..+++|+.|+++++.. +.+|..+..+++|++|+|++|.+++... ..+..+++|+.|+++ +.+.+
T Consensus 260 ------~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~ 331 (592)
T 3ogk_B 260 ------PEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGD 331 (592)
T ss_dssp ------TTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHH
T ss_pred ------HHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCH
Confidence 01122333344444554444322 2344444555555555555555432221 223455555555555 32222
Q ss_pred -CCCccccCCCCccEEEcc-----------CccccccCchH-HHhhcccceeeccCCccCCCCchhhhc-cCCCCeEEcc
Q 001275 350 -EIPDELGQLSNLQDLELF-----------DNRLTGEFPVS-IWRIASLEYLLVYNNNLLGKLPLEMTE-LKQLKNISLY 415 (1109)
Q Consensus 350 -~~p~~l~~l~~L~~L~L~-----------~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~L~ 415 (1109)
.++..+..+++|++|+++ .|.+++..... ...+++|++|+++.|++++..+..+.. +++|+.|+++
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 122222345566666666 24444332222 334566666666666666555555544 6666666664
Q ss_pred ----CCcCccc-----CCccccCCCCCceEEecCC--cccccCCCCccc-CccceEEECCCccccc-CCCcccCCCCccc
Q 001275 416 ----NNQFSGV-----IPQSLGINSSLMQLDFINN--SFTGEIPPNLCF-GKQLRVLNMGQNQFHG-PIPSLLGSCPTLW 482 (1109)
Q Consensus 416 ----~N~l~~~-----~p~~~~~~~~L~~L~ls~N--~l~~~~p~~~~~-~~~L~~L~L~~N~l~~-~~p~~~~~l~~L~ 482 (1109)
.|++++. ++..+..+++|++|++++| .+++..+..+.. +++|++|++++|++++ .++..+.
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------ 485 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR------ 485 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHT------
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHh------
Confidence 5555542 2222445666777777643 255444443332 5667777777777653 1222222
Q ss_pred hhhccCcccCCCCCCCCCCCCCceEEeecCccCCC-CCCcccccccccEEeccCCcccCCcchhhh-cccccceeeccc
Q 001275 483 RVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGA-IPSSIGNSINLTSIDFSSNKFSGLMPQELG-NLVSLVTLNISL 559 (1109)
Q Consensus 483 ~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~ 559 (1109)
.+++|++|++++|.+++. ++..+..+++|++|+|++|++++.....+. .++.+....+..
T Consensus 486 -----------------~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 486 -----------------GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp -----------------CCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred -----------------cCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 334555555555555433 223334455666666666665543222222 344444444443
No 304
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.1e-29 Score=277.60 Aligned_cols=280 Identities=22% Similarity=0.240 Sum_probs=193.2
Q ss_pred cEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccc--cCCcccccccccceeccc
Q 001275 98 QTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDG--EIPEPLFRILGLQYVFLN 175 (1109)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls 175 (1109)
+.++.+++.++ .+|..+. ++|++|+|++|+++...+..|+++++|++|+|++|.++. ..|..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46777877777 5565443 678888888888885444457788888888888887762 224445555566666666
Q ss_pred ccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCc-hhcccccccccccccCcccCCc
Q 001275 176 NNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLP-ESLSNLENLVYLDVGDNNLEGR 254 (1109)
Q Consensus 176 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~ 254 (1109)
+|.++ .+|..+..+++|++|+++ +|++++..+ ..+.++++|++|++++|++++.
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~------------------------~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQ------------------------HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECT------------------------TSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCccc-cChhhcCCCCCCCEEECC------------------------CCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence 66555 234444444444444444 444444333 3455555555555555555555
Q ss_pred ccccccCCCCcchhccccccccC-CCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCcccc
Q 001275 255 INFGSEKCKNLTFLDLSYNRFSG-GISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGK 333 (1109)
Q Consensus 255 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 333 (1109)
.+..+..+++|++|+|++|.+++ ..|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 55555556666666666666664 46777888889999999999999888899999999999999999999777778899
Q ss_pred ccccceeeccCcccCCCCCccccCCC-CccEEEccCccccccCc--hHHHhhcccceeeccCCccCCCCchhhhc
Q 001275 334 CKYLTVLHLYANQLEGEIPDELGQLS-NLQDLELFDNRLTGEFP--VSIWRIASLEYLLVYNNNLLGKLPLEMTE 405 (1109)
Q Consensus 334 l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 405 (1109)
+++|++|++++|++++..|..+..++ +|++|+|++|++++..+ .....+...+.+.+..+.+....|..+.+
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 99999999999999998998898885 89999999999986432 12233444555555556666555555543
No 305
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.1e-29 Score=286.37 Aligned_cols=277 Identities=21% Similarity=0.177 Sum_probs=136.8
Q ss_pred CCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCccccee
Q 001275 117 NCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEAL 196 (1109)
Q Consensus 117 ~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 196 (1109)
.++.....+++++.++ .+|..+. ++|++|+|++|.+++..+..+.++++|++|++++|++++..|..|+++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3455555666666666 4555443 356666666666654333355555555555555555554444445555555555
Q ss_pred ecccccCCCCcccccccccCccEEEeccccccCcCc-hhcccccccccccccCcccCCcccccccCCCCcchhccccc-c
Q 001275 197 WLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLP-ESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYN-R 274 (1109)
Q Consensus 197 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~ 274 (1109)
+|++|++++..+..|+++++|++|+|++|++++..+ ..|.+ +++|++|++++| .
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~------------------------l~~L~~L~l~~n~~ 161 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH------------------------LTKLQILRVGNMDT 161 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTT------------------------CTTCCEEEEEESSS
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhcc------------------------CCCCcEEECCCCcc
Confidence 555555553333334444555555555554443322 23444 444444444444 2
Q ss_pred ccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCcc
Q 001275 275 FSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDE 354 (1109)
Q Consensus 275 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 354 (1109)
+++..+..|.++++|++|++++|++++..|..++.+++|++|++++|+++...+..+..+++|+.|++++|.+++..+..
T Consensus 162 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence 33333344455555555555555555444555555555555555555554222122233455555555555555433332
Q ss_pred cc---CCCCccEEEccCccccc----cCchHHHhhcccceeeccCCccCCCCchh-hhccCCCCeEEccCCcCcc
Q 001275 355 LG---QLSNLQDLELFDNRLTG----EFPVSIWRIASLEYLLVYNNNLLGKLPLE-MTELKQLKNISLYNNQFSG 421 (1109)
Q Consensus 355 l~---~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~ 421 (1109)
+. ..+.++.++++++.+++ .+|..+..+++|++|++++|+++. +|.. +..+++|+.|++++|++++
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccC
Confidence 22 24456666666666654 234445555555555555555552 3322 3455555555555555543
No 306
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.4e-29 Score=284.63 Aligned_cols=249 Identities=23% Similarity=0.276 Sum_probs=157.3
Q ss_pred CCCCCCCcEeeccCccccCCCCccccccCccceeccccccc-cccCCcccc-------cccccceecccccccccccccc
Q 001275 115 LGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLL-DGEIPEPLF-------RILGLQYVFLNNNSLSGSIPRN 186 (1109)
Q Consensus 115 l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~ 186 (1109)
++..++|++|++++|.+ .+|..+... |++|+|++|.+ .+.+|..+. ++++|++|+|++|++++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45566777777777777 566665544 77777777777 345665554 5677777777777777777776
Q ss_pred c--CCCcccceeecccccCCCCcccccccc-----cCccEEEeccccccCcCchhcccccccccccccCcccCCcc--cc
Q 001275 187 V--GDLKEVEALWLFSNRLSGTIPESIGNC-----YRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRI--NF 257 (1109)
Q Consensus 187 l--~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~ 257 (1109)
+ +.+++|++|+|++|++++. |..++.+ ++|++|+|++|++++..|+.|+++++|++|++++|++.+.. +.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 7777777777777777766 6777766 77777777777777777777777777777777777766532 22
Q ss_pred c--ccCCCCcchhccccccccCC--CC-cccccccCCcEEEeecCCCCCcCC-ccccccccccEEEcCCCCCCCCCCCcc
Q 001275 258 G--SEKCKNLTFLDLSYNRFSGG--IS-PNLGNCSSLTHLDIVGSKLTGSIP-SSFGLLARLSSLDLSENQLSGKIPPEL 331 (1109)
Q Consensus 258 ~--~~~l~~L~~L~Ls~N~l~~~--~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l 331 (1109)
. +..+++|++|+|++|++++. ++ ..+..+++|++|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 2 25566666666666666521 11 223345566666666666665443 33444556666666666665 455544
Q ss_pred ccccccceeeccCcccCCCCCccccCCCCccEEEccCccccc
Q 001275 332 GKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTG 373 (1109)
Q Consensus 332 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 373 (1109)
. ++|++|+|++|++++. |. +..+++|++|++++|++++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 4 5556666666666543 43 5555555555555555553
No 307
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.5e-28 Score=273.27 Aligned_cols=234 Identities=20% Similarity=0.231 Sum_probs=129.4
Q ss_pred cccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEc
Q 001275 335 KYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISL 414 (1109)
Q Consensus 335 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 414 (1109)
+.++.|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45556666666665 45555555566666666666555 45555555555555555555555 44555555555555555
Q ss_pred cCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCC
Q 001275 415 YNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGA 494 (1109)
Q Consensus 415 ~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 494 (1109)
++|++.+.+|..++.. ..+..+..+++|++|+|++|+++ .+|..
T Consensus 158 ~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-------------------- 201 (328)
T 4fcg_A 158 RACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPAS-------------------- 201 (328)
T ss_dssp EEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGG--------------------
T ss_pred CCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHh--------------------
Confidence 5555444444433220 00111223444555555555444 33333
Q ss_pred CCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCC
Q 001275 495 LPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCK 574 (1109)
Q Consensus 495 ~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 574 (1109)
+..+++|++|++++|++++ +|..++.+++|++|+|++|++.+.+|..++.+++|++|+|++|.+.+.+|..+..++
T Consensus 202 ---l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 202 ---IANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp ---GGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred ---hcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 4444555555555555553 444555666666666666666666666666666666666666666666666666666
Q ss_pred CccEEEecCccccCCCCcccccccccceecccccccc
Q 001275 575 NLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFT 611 (1109)
Q Consensus 575 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 611 (1109)
+|+.|||++|++.+.+|..++.+++|+.++++.|.+.
T Consensus 278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 6666666666666666666666666666666655544
No 308
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.4e-28 Score=268.25 Aligned_cols=255 Identities=22% Similarity=0.191 Sum_probs=143.9
Q ss_pred cEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeecccc
Q 001275 122 EYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSN 201 (1109)
Q Consensus 122 ~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N 201 (1109)
++++.+++.++ .+|..+ .++|++|+|++|.+++..+..+..+++|++|++++|++++..|..|+++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666665 344433 345566666666555444444444555555555555544444444444444444444444
Q ss_pred cCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCCCCc
Q 001275 202 RLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISP 281 (1109)
Q Consensus 202 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 281 (1109)
. .++...|..|.++++|++|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus 91 ~-----------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 91 A-----------------------QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147 (285)
T ss_dssp T-----------------------TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred C-----------------------CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh
Confidence 3 04433344444444444444444444444444444455555555555555544445
Q ss_pred ccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCc
Q 001275 282 NLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNL 361 (1109)
Q Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 361 (1109)
.|..+++|++|++++|++++..+..|..+++|+.|++++|++++..|..|..+++|+.|++++|++++..+..+..+++|
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 56666666667777666665555566777777777777777776667777777777777777777776555567777777
Q ss_pred cEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhh
Q 001275 362 QDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEM 403 (1109)
Q Consensus 362 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 403 (1109)
++|++++|++....+.. +-...++.+..+.+.+....|..+
T Consensus 228 ~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 228 QYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp CEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred CEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence 77777777776533321 222334444455555555555544
No 309
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.2e-27 Score=263.30 Aligned_cols=235 Identities=18% Similarity=0.165 Sum_probs=136.3
Q ss_pred CCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcc-cccCCCcccCCCCccchhh
Q 001275 407 KQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQ-FHGPIPSLLGSCPTLWRVI 485 (1109)
Q Consensus 407 ~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~l~ 485 (1109)
++|+.|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+ +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555555444455555555555555555555445555555555555555554 4444445555555555555
Q ss_pred ccCcccCCCCCC-CCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccc
Q 001275 486 LKQNQLTGALPE-FSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEG 564 (1109)
Q Consensus 486 l~~N~l~~~~~~-~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 564 (1109)
+++|++++..|. +..+++|++|++++|++++..+..++++++|++|+|++|++++..+..+..+++|++|++++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 555555544443 5556666666666666665555556666667777777776665555556666667777777776666
Q ss_pred cCCccccCCCCccEEEecCccccCCCCcccccccccceeccccccccCCCcchhhhhhhhhhhhcccCcCCCCCCCCc
Q 001275 565 SLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIPTFISELEKLLELQLGGNQLGGEIPPSI 642 (1109)
Q Consensus 565 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~ 642 (1109)
..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....+.. .-...++.+..+.|.+....|+.+
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence 66666666677777777777776554455666666777777777666433321 222344444555555554444433
No 310
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=5.8e-28 Score=293.58 Aligned_cols=293 Identities=23% Similarity=0.289 Sum_probs=163.1
Q ss_pred cccCCCCCCCCCCceeeeEEecC------CCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCC
Q 001275 46 LIISSWNSSDSTPCQWVGIECDD------DAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCS 119 (1109)
Q Consensus 46 ~~l~sW~~~~~~~c~w~gv~C~~------~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 119 (1109)
...++|... .+||.|+|..|.. ....++.+++++++++ .+|..+. ++|++|+|++|+++ .+|. .++
T Consensus 10 ~~w~~W~~~-~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~ 81 (622)
T 3g06_A 10 AVWSAWRRA-APAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPP 81 (622)
T ss_dssp CHHHHHHHT-CCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCT
T ss_pred HHHHHHHhc-CCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCC
Confidence 345678654 4579997643321 1123556666666655 4555443 56666666666665 3443 345
Q ss_pred CCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeecc
Q 001275 120 ALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLF 199 (1109)
Q Consensus 120 ~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 199 (1109)
+|++|+|++|++++ +|. .+++|++|+|++|.++ .+|. .+.+|+.|++++|++++ +|.. +++|++|+|+
T Consensus 82 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls 149 (622)
T 3g06_A 82 ELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVS 149 (622)
T ss_dssp TCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred CCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECc
Confidence 66666666666652 443 4556666666666655 2333 33455555555555553 3322 2444555555
Q ss_pred cccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCCC
Q 001275 200 SNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGI 279 (1109)
Q Consensus 200 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 279 (1109)
+|+++ +. |. .+++|+.|++++|++++.. ..+++|+.|+|++|.+++ +
T Consensus 150 ~N~l~------------------------~l-~~---~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l 196 (622)
T 3g06_A 150 DNQLA------------------------SL-PA---LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-L 196 (622)
T ss_dssp SSCCS------------------------CC-CC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-C
T ss_pred CCcCC------------------------Cc-CC---ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-C
Confidence 55444 32 21 1234445555555554322 234555555555555553 2
Q ss_pred CcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCC
Q 001275 280 SPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLS 359 (1109)
Q Consensus 280 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 359 (1109)
|.. +++|+.|++++|.++. +|.. +++|+.|++++|++++ +| ..+++|+.|+|++|+|+ .+|. .++
T Consensus 197 ~~~---~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~ 261 (622)
T 3g06_A 197 PTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPS 261 (622)
T ss_dssp CCC---CTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCT
T ss_pred CCc---cchhhEEECcCCcccc-cCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccc
Confidence 221 3566666666666663 3322 3567777777777764 44 34466777777777776 3444 456
Q ss_pred CccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccC
Q 001275 360 NLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELK 407 (1109)
Q Consensus 360 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 407 (1109)
+|+.|+|++|+|+ .+|..+.++++|+.|++++|.+++..|..+..++
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 6777777777777 5666677777777777777777766666666554
No 311
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=5.9e-29 Score=280.31 Aligned_cols=265 Identities=18% Similarity=0.163 Sum_probs=147.0
Q ss_pred cEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCC
Q 001275 362 QDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINN 441 (1109)
Q Consensus 362 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N 441 (1109)
+.++++.+.+.......+..+++|++|++++|.+++..|..+..+++|+.|+|++|++++..| +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 344555555543333333445566666666666666556666666666666666666665443 566666666666666
Q ss_pred cccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCC-CCCCCCCceEEeecCccCCCCCC
Q 001275 442 SFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPE-FSKNPVLSHLDVSRNNISGAIPS 520 (1109)
Q Consensus 442 ~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~L~~L~Ls~N~i~~~~p~ 520 (1109)
.+++.. ..++|++|++++|++++..+.. +++|+.|++++|++++..+. +..+++|++|++++|+|++..|.
T Consensus 91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 91 YVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred cccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 666432 2256666666666666543332 33444444555554444332 44555555555555555554444
Q ss_pred ccc-ccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCCcccccccc
Q 001275 521 SIG-NSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKS 599 (1109)
Q Consensus 521 ~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~ 599 (1109)
.+. .+++|++|+|++|++++. |. ...+++|++|+|++|++++ +|..+..+++|+.|+|++|+|+ .+|..+..+++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~ 238 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTT
T ss_pred HHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCC
Confidence 442 455566666666665533 21 2235556666666666653 3334555666666666666665 35555556666
Q ss_pred cceecccccccc-CCCcchhhhhhhhhhhhcc-cCcCCCCCCC
Q 001275 600 LSILKLSENHFT-GGIPTFISELEKLLELQLG-GNQLGGEIPP 640 (1109)
Q Consensus 600 L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~l~-~N~l~g~ip~ 640 (1109)
|+.|++++|+++ +.+|.++..+++|+.|+++ .+.++|..|.
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 666666666665 4555566666666666655 2334444433
No 312
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=8.5e-29 Score=278.35 Aligned_cols=249 Identities=21% Similarity=0.203 Sum_probs=179.2
Q ss_pred cccccCccceeccccccccccCCcccccccccceeccccccc-ccccccccC-------CCcccceeecccccCCCCccc
Q 001275 138 NFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSL-SGSIPRNVG-------DLKEVEALWLFSNRLSGTIPE 209 (1109)
Q Consensus 138 ~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~l~-------~l~~L~~L~L~~N~l~~~~p~ 209 (1109)
.++..++|++|++++|.+ .+|..+... |+.|+|++|++ .+.+|..+. ++++|++|+|++|++++.+|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 457788999999999999 788877765 99999999999 456676665 789999999999999999998
Q ss_pred cc--ccccCccEEEeccccccCcCchhcccc-----cccccccccCcccCCcccccccCCCCcchhccccccccCC--CC
Q 001275 210 SI--GNCYRLQELYLNENKLMGFLPESLSNL-----ENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGG--IS 280 (1109)
Q Consensus 210 ~l--~~l~~L~~L~L~~N~l~~~~~~~l~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~ 280 (1109)
.+ +.+++|++|+|++|++++. |..+..+ ++|++|++++|++++..+..+..+++|++|+|++|++.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 86 8999999999999999987 8888887 7888888888888877777777788888888888876653 22
Q ss_pred ccc--ccccCCcEEEeecCCCCCc---CCccccccccccEEEcCCCCCCCCCC-CccccccccceeeccCcccCCCCCcc
Q 001275 281 PNL--GNCSSLTHLDIVGSKLTGS---IPSSFGLLARLSSLDLSENQLSGKIP-PELGKCKYLTVLHLYANQLEGEIPDE 354 (1109)
Q Consensus 281 ~~~--~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~ 354 (1109)
..+ ..+++|++|++++|++++. ....+..+++|++|++++|++++.+| ..+..+++|++|+|++|+++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 233 6677777777777777631 11333455677777777777766553 34455666666666666666 45554
Q ss_pred ccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccC
Q 001275 355 LGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLL 396 (1109)
Q Consensus 355 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 396 (1109)
+. ++|++|+|++|+|++. |. +..+++|++|++++|+++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 44 5566666666666543 33 444555555555555444
No 313
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.9e-27 Score=278.55 Aligned_cols=249 Identities=24% Similarity=0.239 Sum_probs=164.2
Q ss_pred ccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccc
Q 001275 97 LQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNN 176 (1109)
Q Consensus 97 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 176 (1109)
.+.++.+++.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..+.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 345666666666 4565443 5677777777777766667777777777777777777655555555566666666666
Q ss_pred cccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCccc
Q 001275 177 NSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRIN 256 (1109)
Q Consensus 177 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 256 (1109)
|++++..+..|+.+++|++|+|++|+++...+..|.++++|++|++++| |.++...+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~-----------------------~~l~~i~~ 189 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL-----------------------KKLEYISE 189 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC-----------------------TTCCEECT
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC-----------------------CCccccCh
Confidence 6555444444555555555555555555444444444555555555442 22332333
Q ss_pred ccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccc
Q 001275 257 FGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKY 336 (1109)
Q Consensus 257 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 336 (1109)
..+..+++|++|+|++|++++. +.+..+++|+.|++++|++++..|..|..+++|+.|+|++|++++..|..|.++++
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 3455555556666666655532 24667777888888888888777788888888888888888888777788888888
Q ss_pred cceeeccCcccCCCCCccccCCCCccEEEccCccccc
Q 001275 337 LTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTG 373 (1109)
Q Consensus 337 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 373 (1109)
|+.|+|++|++++..+..+..+++|++|+|++|.+..
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 8888888888887666777888888888888888764
No 314
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=9.1e-29 Score=278.75 Aligned_cols=236 Identities=25% Similarity=0.216 Sum_probs=109.3
Q ss_pred cccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceee
Q 001275 310 LARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLL 389 (1109)
Q Consensus 310 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 389 (1109)
+++|++|+|++|++++..|..|+.+++|++|+|++|++++..+ +..+++|++|++++|++++. + ..++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcCEEE
Confidence 3344444444444443333344444444444444444443222 44444444444444444421 1 113444444
Q ss_pred ccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcc-cCccceEEECCCcccc
Q 001275 390 VYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLC-FGKQLRVLNMGQNQFH 468 (1109)
Q Consensus 390 l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~-~~~~L~~L~L~~N~l~ 468 (1109)
+++|++++..+. .+++|+.|++++|++++..|..++.+++|++|++++|.+++..+..+. .+++|++|+|++|+++
T Consensus 106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 444444432222 133455555555555544444444445555555555555544443332 3445555555555554
Q ss_pred cCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCccc-CCcchhhh
Q 001275 469 GPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFS-GLMPQELG 547 (1109)
Q Consensus 469 ~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~ 547 (1109)
+. |. ...+++|+.|++++|++++.++.+..+++|++|++++|+|+ .+|..+..+++|+.|++++|+++ +.+|..++
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 183 DV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred cc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 32 11 11234444444444444433334444555555555555555 34555555555556666665555 44555555
Q ss_pred cccccceeecc
Q 001275 548 NLVSLVTLNIS 558 (1109)
Q Consensus 548 ~l~~L~~L~L~ 558 (1109)
.+++|+.|+++
T Consensus 260 ~~~~L~~l~l~ 270 (317)
T 3o53_A 260 KNQRVQTVAKQ 270 (317)
T ss_dssp TCHHHHHHHHH
T ss_pred ccccceEEECC
Confidence 55555555555
No 315
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.9e-26 Score=280.33 Aligned_cols=263 Identities=26% Similarity=0.337 Sum_probs=127.1
Q ss_pred CCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccEEEcc
Q 001275 288 SLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELF 367 (1109)
Q Consensus 288 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 367 (1109)
+++.|++++|.++ .+|..+. ++|+.|+|++|.++ .+|. .+++|++|+|++|+++ .+|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4677777777776 4555443 56777777777776 3444 3566667777777666 3443 45666666666
Q ss_pred CccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccC
Q 001275 368 DNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEI 447 (1109)
Q Consensus 368 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~ 447 (1109)
+|++++ +|. .+++|+.|++++|++++ +|.. +++|+.|++++|++++ +|. ..
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~----------------- 160 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LP----------------- 160 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CC-----------------
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---cc-----------------
Confidence 666663 332 33445555555555443 2221 2444444444444442 121 12
Q ss_pred CCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCccccccc
Q 001275 448 PPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSIN 527 (1109)
Q Consensus 448 p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~ 527 (1109)
.+|+.|++++|+|++ +| ..+++|+.|++++|++++.++ ..++|+.|++++|.|+ .+|.. +++
T Consensus 161 -------~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~ 222 (622)
T 3g06_A 161 -------SELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLT-SLPAL---PSG 222 (622)
T ss_dssp -------TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-SCCCC---CTT
T ss_pred -------CCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCccc-ccCCC---CCC
Confidence 334444444444442 22 112233333333333332111 1234555555555555 23322 244
Q ss_pred ccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCCcccccccccceecccc
Q 001275 528 LTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSE 607 (1109)
Q Consensus 528 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~ 607 (1109)
|+.|+|++|+|++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+..+++|+.|+|++
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence 5555555555553 23 23344555555555554 3333 3344555555555555 4444444555555555555
Q ss_pred ccccCCCcch
Q 001275 608 NHFTGGIPTF 617 (1109)
Q Consensus 608 N~l~~~~p~~ 617 (1109)
|++++.+|..
T Consensus 294 N~l~~~~~~~ 303 (622)
T 3g06_A 294 NPLSERTLQA 303 (622)
T ss_dssp CCCCHHHHHH
T ss_pred CCCCCcCHHH
Confidence 5444444433
No 316
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=274.30 Aligned_cols=249 Identities=20% Similarity=0.218 Sum_probs=137.5
Q ss_pred ccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccC
Q 001275 313 LSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYN 392 (1109)
Q Consensus 313 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 392 (1109)
...++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345555555555 4444443 4555666666666555555566666666666666666554445555555555555555
Q ss_pred CccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCC
Q 001275 393 NNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIP 472 (1109)
Q Consensus 393 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p 472 (1109)
|++++..+..|..+++|+.|+|++|++++..+..+..+++|++|++++|+. +....+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~-----------------------l~~i~~ 178 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR-----------------------LSYISE 178 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT-----------------------CCEECT
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC-----------------------cceeCc
Confidence 555544444455555555555555555544444444444455544444222 211111
Q ss_pred cccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhccccc
Q 001275 473 SLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSL 552 (1109)
Q Consensus 473 ~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 552 (1109)
.. |..+++|++|++++|+++ .+| .+..+++|+.|+|++|++++..|..|.++++|
T Consensus 179 ~~-----------------------~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 233 (440)
T 3zyj_A 179 GA-----------------------FEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233 (440)
T ss_dssp TT-----------------------TTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ch-----------------------hhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccC
Confidence 12 333344444444444444 233 24455556666666666655555566666666
Q ss_pred ceeecccccccccCCccccCCCCccEEEecCccccCCCCcccccccccceeccccccccC
Q 001275 553 VTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTG 612 (1109)
Q Consensus 553 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 612 (1109)
+.|+|++|+|++..|..|..+++|+.|||++|+|++..+..|..+++|+.|+|++|.+..
T Consensus 234 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 666666666666666666666777777777777775555666667777777777777763
No 317
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.6e-27 Score=278.81 Aligned_cols=234 Identities=23% Similarity=0.232 Sum_probs=176.2
Q ss_pred cCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccc
Q 001275 87 LGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRI 166 (1109)
Q Consensus 87 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l 166 (1109)
+|..+. +++++|+|++|++++..|..|+++++|++|+|++|++++..|..|.++++|++|+|++|.+++..+..+..+
T Consensus 69 iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 146 (452)
T 3zyi_A 69 VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146 (452)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhccc
Confidence 555443 689999999999999999999999999999999999999888999999999999999999996666778899
Q ss_pred cccceecccccccccccccccCCCcccceeecccccCCCCc-ccccccccCccEEEeccccccCcCchhccccccccccc
Q 001275 167 LGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTI-PESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLD 245 (1109)
Q Consensus 167 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ 245 (1109)
++|++|+|++|+++...+..|.++++|++|++++|+..+.+ +..|.++++|++|+|++|++++. | .+..+++|+.|+
T Consensus 147 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 224 (452)
T 3zyi_A 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELE 224 (452)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEE
T ss_pred CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEE
Confidence 99999999999999777779999999999999995444444 44688888888888888888754 2 355555555555
Q ss_pred ccCcccCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCC
Q 001275 246 VGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSG 325 (1109)
Q Consensus 246 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 325 (1109)
|++|++++.. +..|.++++|+.|++++|++++..+..|..+++|+.|+|++|++++
T Consensus 225 Ls~N~l~~~~------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 225 MSGNHFPEIR------------------------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CTTSCCSEEC------------------------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CcCCcCcccC------------------------cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 5555555444 4445555555555555555555555555555666666666666665
Q ss_pred CCCCccccccccceeeccCcccC
Q 001275 326 KIPPELGKCKYLTVLHLYANQLE 348 (1109)
Q Consensus 326 ~~p~~l~~l~~L~~L~L~~N~l~ 348 (1109)
..+..|..+++|+.|+|++|.+.
T Consensus 281 ~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 281 LPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCTTSSTTCTTCCEEECCSSCEE
T ss_pred cChHHhccccCCCEEEccCCCcC
Confidence 55555566666666666666554
No 318
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=9.2e-27 Score=275.17 Aligned_cols=249 Identities=22% Similarity=0.236 Sum_probs=167.8
Q ss_pred ccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccc
Q 001275 97 LQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNN 176 (1109)
Q Consensus 97 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 176 (1109)
.+.++.++++++ .+|..+. +++++|+|++|++++..+..|.++++|++|+|++|.+++..+..+.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 356777787877 6676664 6788888888888877777888888888888888877755555555566666666666
Q ss_pred cccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCccc
Q 001275 177 NSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRIN 256 (1109)
Q Consensus 177 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 256 (1109)
|++++..+..|..+++|++|+|++|+++...+..|.++++|++|+|++| |.++...+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~-----------------------~~l~~i~~ 178 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL-----------------------KRLSYISE 178 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC-----------------------TTCCEECT
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC-----------------------CCcceeCc
Confidence 6655444444555555555555555555444444445555555555442 22222233
Q ss_pred ccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccc
Q 001275 257 FGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKY 336 (1109)
Q Consensus 257 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 336 (1109)
..|..+++|++|+|++|.++. +| .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|.++++
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred chhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 344555555555555555552 22 3666777888888888887777778888888888888888888777778888888
Q ss_pred cceeeccCcccCCCCCccccCCCCccEEEccCccccc
Q 001275 337 LTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTG 373 (1109)
Q Consensus 337 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 373 (1109)
|+.|+|++|++++..+..+..+++|+.|+|++|.+..
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 8888888888887766777888888888888888764
No 319
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.8e-27 Score=278.84 Aligned_cols=233 Identities=19% Similarity=0.179 Sum_probs=126.6
Q ss_pred ccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECC
Q 001275 384 SLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMG 463 (1109)
Q Consensus 384 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~ 463 (1109)
+|++|+|++|.+++..|..|..+++|+.|+|++|.+++.+| ++.+++|++|+|++|.|++..+ .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 67777777777777667777777777777777777776555 6677777777777777764332 2567777777
Q ss_pred CcccccCCCcccCCCCccchhhccCcccCCCCCC-CCCCCCCceEEeecCccCCCCCCccc-ccccccEEeccCCcccCC
Q 001275 464 QNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPE-FSKNPVLSHLDVSRNNISGAIPSSIG-NSINLTSIDFSSNKFSGL 541 (1109)
Q Consensus 464 ~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~L~~L~Ls~N~i~~~~p~~~~-~l~~L~~L~Ls~N~l~~~ 541 (1109)
+|+|.+..+.. +++|+.|++++|++++.+|. +..+++|++|+|++|+|++.+|..+. .+++|+.|+|++|.|++.
T Consensus 108 ~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 77776544332 23444444444444444332 44444455555555555444444443 344555555555555433
Q ss_pred cchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCCcccccccccceecccccccc-CCCcchhhh
Q 001275 542 MPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFT-GGIPTFISE 620 (1109)
Q Consensus 542 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~ 620 (1109)
| .+..+++|++|+|++|+|++ +|..+..+++|+.|||++|+|++ +|..+..+++|+.|++++|.+. +.+|.++..
T Consensus 185 -~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 -K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp -E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred -c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 1 12234445555555555543 22234444555555555555542 4444444455555555555544 334444444
Q ss_pred hhhhhhhhcc
Q 001275 621 LEKLLELQLG 630 (1109)
Q Consensus 621 l~~L~~L~l~ 630 (1109)
++.|+.++++
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 4444444443
No 320
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.8e-27 Score=278.33 Aligned_cols=237 Identities=22% Similarity=0.221 Sum_probs=119.6
Q ss_pred CCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceee
Q 001275 118 CSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALW 197 (1109)
Q Consensus 118 l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 197 (1109)
+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| +..+++|++|+|++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3455555555555555444555555555555555555554333 4444555555555555443221 14455555
Q ss_pred cccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccC
Q 001275 198 LFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSG 277 (1109)
Q Consensus 198 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 277 (1109)
+++|.+++..+.. +++|+.|+|++|.+++..|..|+++++|++|+|++|.+++.++..+.
T Consensus 106 L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----------------- 165 (487)
T 3oja_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----------------- 165 (487)
T ss_dssp CCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-----------------
T ss_pred CcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-----------------
Confidence 5555555433322 24455555555555544444444444444444444444443333332
Q ss_pred CCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccC
Q 001275 278 GISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQ 357 (1109)
Q Consensus 278 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 357 (1109)
..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+++ +|+.+..+++|+.|+|++|.+++ +|..+..
T Consensus 166 ------~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~ 235 (487)
T 3oja_A 166 ------ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRF 235 (487)
T ss_dssp ------GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred ------hhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhcc
Confidence 133344444444444443211 1234555555555555553 33335556666666666666653 4555666
Q ss_pred CCCccEEEccCcccc-ccCchHHHhhcccceeecc
Q 001275 358 LSNLQDLELFDNRLT-GEFPVSIWRIASLEYLLVY 391 (1109)
Q Consensus 358 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~ 391 (1109)
+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 666666666666665 4556666666677766665
No 321
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.1e-25 Score=247.36 Aligned_cols=216 Identities=22% Similarity=0.222 Sum_probs=124.2
Q ss_pred CCceeeeEEecCCCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCC
Q 001275 57 TPCQWVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIP 136 (1109)
Q Consensus 57 ~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 136 (1109)
++|.|.|+.|+... .++.+++++++++. +|..+. ++|++|+|++|++++..+..|+++++|++|+|++|+++...+
T Consensus 3 ~~C~~~~~~C~c~~-~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 3 ALCKKDGGVCSCNN-NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCBGGGTCSBEEET-TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred ccCCCCCCCCEeCC-CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 57999998886422 34456777766663 554443 456777777777765555566677777777777777665444
Q ss_pred ccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeecccccCCCCcccccccccC
Q 001275 137 DNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYR 216 (1109)
Q Consensus 137 ~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 216 (1109)
..|.++++|++|+|++|.+++..+..+..+++|++|++++|++++..+..|+.+++|++|+|++|++++..+..|+.+++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 45566666666666666666444444455555555555555555544444555555555555555555444444455555
Q ss_pred ccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeec
Q 001275 217 LQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVG 296 (1109)
Q Consensus 217 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 296 (1109)
|++|+|++|++++..+..|. .+++|++|+|++|++++..+..|..+++|+.|++++
T Consensus 159 L~~L~L~~n~l~~~~~~~~~------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFD------------------------KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTT------------------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cceeEecCCcCcEeChhHhc------------------------cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 55555555555544444444 445555555555555544444455555555566655
Q ss_pred CCCC
Q 001275 297 SKLT 300 (1109)
Q Consensus 297 n~l~ 300 (1109)
|.+.
T Consensus 215 N~~~ 218 (270)
T 2o6q_A 215 NPWD 218 (270)
T ss_dssp SCBC
T ss_pred CCee
Confidence 5554
No 322
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=9.7e-29 Score=304.53 Aligned_cols=132 Identities=10% Similarity=0.153 Sum_probs=79.5
Q ss_pred CCCCceEEee--c----CccCCC-----CCCcccccccccEEeccCCcccCCcchhhhc-ccccceeecccccccccCCc
Q 001275 501 NPVLSHLDVS--R----NNISGA-----IPSSIGNSINLTSIDFSSNKFSGLMPQELGN-LVSLVTLNISLNHVEGSLPS 568 (1109)
Q Consensus 501 ~~~L~~L~Ls--~----N~i~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~ 568 (1109)
+++|++|+++ + |++++. ++..+..+++|+.|++++ .+++..+..++. +++|++|+|++|.+++..+.
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~ 474 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH 474 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH
Confidence 5566666666 3 444421 111245567777777766 566555555655 67788888888877665444
Q ss_pred cc-cCCCCccEEEecCccccCCCCc-ccccccccceeccccccccCCCcchh-hhhhhhhhhhcccCc
Q 001275 569 QL-SKCKNLEVFDVSFNLLNGSIPS-SLRSWKSLSILKLSENHFTGGIPTFI-SELEKLLELQLGGNQ 633 (1109)
Q Consensus 569 ~l-~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~l~~N~ 633 (1109)
.+ ..+++|+.|+|++|.+++..+. .+..+++|+.|++++|+++......+ ..+++|+...+..+.
T Consensus 475 ~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 475 HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 44 5577888888888887544333 33457788888888887753322333 334555444444443
No 323
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.92 E-value=1.8e-26 Score=278.84 Aligned_cols=185 Identities=16% Similarity=0.101 Sum_probs=129.8
Q ss_pred eecccCeEEEEE-EeCCCcEEEEEEeeeccc---------ccChHHHHHHHHHHhcC-CCCceeeEeeEEecCCceeEEE
Q 001275 827 IGRGAHGIVYKA-SLGPNAVFAVKKLAFRGH---------KRGSLSMKREIQTIGKI-RHRNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 827 lG~G~~g~Vy~~-~~~~~~~vavK~~~~~~~---------~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 895 (1109)
.+.|++|.++.+ +.-.|+.||+|.+..... +...++|.+|+++|+++ .|+||+++++++.+++..||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 556666666665 334588899999865421 22345699999999999 7999999999999999999999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCC
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKS 975 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~ 975 (1109)
||++||+|.+++...+. ++.. +|+.||+.||+|+| +.+||||||||+|||+++++.+||+|||+|+.....
T Consensus 322 Eyv~G~~L~d~i~~~~~---l~~~---~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~ 392 (569)
T 4azs_A 322 EKLPGRLLSDMLAAGEE---IDRE---KILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD 392 (569)
T ss_dssp ECCCSEEHHHHHHTTCC---CCHH---HHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC--
T ss_pred ecCCCCcHHHHHHhCCC---CCHH---HHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeecccCeeCCCC
Confidence 99999999999987543 5543 58899999999999 999999999999999999999999999999876543
Q ss_pred CCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCC
Q 001275 976 PASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKA 1023 (1109)
Q Consensus 976 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p 1023 (1109)
.. .....+||++|+|||++.+ .+..++|+||+|++.+++.++..+
T Consensus 393 ~~--~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 393 CS--WPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp -C--CSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred Cc--cccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence 22 2234689999999998865 467789999999998887766544
No 324
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.4e-28 Score=303.14 Aligned_cols=283 Identities=17% Similarity=0.130 Sum_probs=166.8
Q ss_pred ccccceeeccCc-ccCCCCCccccCCCCccEEEccC-------ccccccCchHHHhhccccee-eccCCccCCCCchhhh
Q 001275 334 CKYLTVLHLYAN-QLEGEIPDELGQLSNLQDLELFD-------NRLTGEFPVSIWRIASLEYL-LVYNNNLLGKLPLEMT 404 (1109)
Q Consensus 334 l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~-------N~l~~~~~~~~~~l~~L~~L-~l~~N~l~~~~~~~~~ 404 (1109)
+++|++|++++| .+.+ +|..+..+++|++|+++. |.+.+ ++..+.++++|+.| .+.+... +.++..+.
T Consensus 210 ~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~ 286 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYS 286 (594)
T ss_dssp CTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHH
T ss_pred CCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHH
Confidence 345555555544 2222 344444455555555322 22332 33345555555555 2322221 22333344
Q ss_pred ccCCCCeEEccCCcCcccCCc-cccCCCCCceEEecCCcccccCCCCc-ccCccceEEECCCcccccCCCcccCCCCccc
Q 001275 405 ELKQLKNISLYNNQFSGVIPQ-SLGINSSLMQLDFINNSFTGEIPPNL-CFGKQLRVLNMGQNQFHGPIPSLLGSCPTLW 482 (1109)
Q Consensus 405 ~l~~L~~L~L~~N~l~~~~p~-~~~~~~~L~~L~ls~N~l~~~~p~~~-~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 482 (1109)
.+++|+.|++++|.+++.... .+..+++|++|++++| +++.....+ ..+++|+.|+++.+.-.|
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g------------- 352 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV------------- 352 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC-------------
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc-------------
Confidence 556666666666665432221 1334556666666655 332211111 124555555553321000
Q ss_pred hhhccCcccCCCC-CCC-CCCCCCceEEeecCccCCCCCCccc-ccccccEEecc--C----CcccCC-----cchhhhc
Q 001275 483 RVILKQNQLTGAL-PEF-SKNPVLSHLDVSRNNISGAIPSSIG-NSINLTSIDFS--S----NKFSGL-----MPQELGN 548 (1109)
Q Consensus 483 ~l~l~~N~l~~~~-~~~-~~~~~L~~L~Ls~N~i~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~-----~p~~~~~ 548 (1109)
....+.+++.. ..+ ..+++|++|+++.|++++..+..+. .+++|+.|+++ + |++++. ++..+..
T Consensus 353 --~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~ 430 (594)
T 2p1m_B 353 --MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430 (594)
T ss_dssp --SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH
T ss_pred --cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh
Confidence 00122222111 111 2367899999999999877666665 58899999999 4 667632 2233677
Q ss_pred ccccceeecccccccccCCccccC-CCCccEEEecCccccCCCCccc-ccccccceeccccccccCCCcc-hhhhhhhhh
Q 001275 549 LVSLVTLNISLNHVEGSLPSQLSK-CKNLEVFDVSFNLLNGSIPSSL-RSWKSLSILKLSENHFTGGIPT-FISELEKLL 625 (1109)
Q Consensus 549 l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~ 625 (1109)
+++|+.|+|++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|++++..+. .+..+++|+
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 89999999987 777666666666 8999999999999986655555 6789999999999999755443 456689999
Q ss_pred hhhcccCcCCC
Q 001275 626 ELQLGGNQLGG 636 (1109)
Q Consensus 626 ~L~l~~N~l~g 636 (1109)
.|++++|+++.
T Consensus 510 ~L~l~~~~~~~ 520 (594)
T 2p1m_B 510 SLWMSSCSVSF 520 (594)
T ss_dssp EEEEESSCCBH
T ss_pred EEeeeCCCCCH
Confidence 99999999853
No 325
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.6e-24 Score=239.01 Aligned_cols=211 Identities=22% Similarity=0.209 Sum_probs=154.7
Q ss_pred CCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecc
Q 001275 95 SKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFL 174 (1109)
Q Consensus 95 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 174 (1109)
++|++|+|++|++++..+..++++++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 47899999999998777778899999999999999998777778888999999999999888777777888888888888
Q ss_pred cccccccccccccCCCcccceeecccccCCCC-cccccccccCccEEEeccccccCcCchhcccccccccccccCcccCC
Q 001275 175 NNNSLSGSIPRNVGDLKEVEALWLFSNRLSGT-IPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEG 253 (1109)
Q Consensus 175 s~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 253 (1109)
++|++++..+..++.+++|++|++++|++++. +|..|+++++|++|+|++|++++..+..|..+++|+.|.+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l------- 180 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL------- 180 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE-------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce-------
Confidence 88888876666788888888888888888763 5777888888888888888887777777776666662211
Q ss_pred cccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCC
Q 001275 254 RINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGK 326 (1109)
Q Consensus 254 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 326 (1109)
.|++++|.+++..+..+. ..+|+.|++++|++++..+..|..+++|+.|++++|.+++.
T Consensus 181 -------------~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 181 -------------SLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp -------------EEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred -------------eeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 344444444433332222 23566666666666655555566666777777777766643
No 326
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=4.1e-24 Score=235.74 Aligned_cols=207 Identities=20% Similarity=0.193 Sum_probs=143.2
Q ss_pred CCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhcc
Q 001275 408 QLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILK 487 (1109)
Q Consensus 408 ~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~ 487 (1109)
+|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45666666666665555555566666666666666665555556666666666666666666555666666666666666
Q ss_pred CcccCCCCCC-CCCCCCCceEEeecCccCCC-CCCcccccccccEEeccCCcccCCcchhhhcccccc----eeeccccc
Q 001275 488 QNQLTGALPE-FSKNPVLSHLDVSRNNISGA-IPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLV----TLNISLNH 561 (1109)
Q Consensus 488 ~N~l~~~~~~-~~~~~~L~~L~Ls~N~i~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~L~~N~ 561 (1109)
+|++++..+. +..+++|++|++++|++++. +|..++++++|+.|++++|++++..+..+..+.+|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 6666655553 77778888888888888763 578888888888888888888877777777777777 77888888
Q ss_pred ccccCCccccCCCCccEEEecCccccCCCCcccccccccceeccccccccCCCc
Q 001275 562 VEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIP 615 (1109)
Q Consensus 562 l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 615 (1109)
+++..+..+. ..+|+.|++++|++++..+..|..+++|+.|+|++|++++..|
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 8754444443 3478888888888876555566777788888888887776544
No 327
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.1e-24 Score=239.48 Aligned_cols=230 Identities=19% Similarity=0.194 Sum_probs=139.9
Q ss_pred hcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEE
Q 001275 382 IASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLN 461 (1109)
Q Consensus 382 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~ 461 (1109)
+..+..+++..+.+.+. .....+++|+.|++++|.++.. ..+..+++|++|++++|.+++. +.+..+++|++|+
T Consensus 18 ~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred HHHHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence 34556667777776643 3356778888888888887632 2356666677777776666542 2444455555555
Q ss_pred CCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCC
Q 001275 462 MGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGL 541 (1109)
Q Consensus 462 L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 541 (1109)
+++|++++..+.. |..+++|++|++++|++++..|..++++++|++|++++|++++.
T Consensus 92 L~~n~l~~~~~~~-----------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 148 (272)
T 3rfs_A 92 LTGNQLQSLPNGV-----------------------FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL 148 (272)
T ss_dssp CTTSCCCCCCTTT-----------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCccCccChhH-----------------------hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCcc
Confidence 5555554333332 44555566666666666655555566666666666666666655
Q ss_pred cchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCCcccccccccceeccccccccCCCcchhhhh
Q 001275 542 MPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIPTFISEL 621 (1109)
Q Consensus 542 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 621 (1109)
.|..++.+++|++|++++|++++..|..++.+++|+.|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~------ 222 (272)
T 3rfs_A 149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------ 222 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT------
T ss_pred CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc------
Confidence 55555666666666666666665555556666666666666666666555556666666666666666665433
Q ss_pred hhhhhhhcccCcCCCCCCCCchhhhh
Q 001275 622 EKLLELQLGGNQLGGEIPPSIGALQD 647 (1109)
Q Consensus 622 ~~L~~L~l~~N~l~g~ip~~~~~l~~ 647 (1109)
+|+.|+++.|+++|.+|.+++.+..
T Consensus 223 -~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 223 -GIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -HHHHHHHHHHhCCCcccCcccccCC
Confidence 4566666666666666666665543
No 328
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=9.4e-26 Score=259.16 Aligned_cols=260 Identities=17% Similarity=0.178 Sum_probs=145.1
Q ss_pred EEcCCCCCCCCCCCccccccccceeeccCcccCCCCC----ccccCCC-CccEEEccCccccccCchHHHhh-----ccc
Q 001275 316 LDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIP----DELGQLS-NLQDLELFDNRLTGEFPVSIWRI-----ASL 385 (1109)
Q Consensus 316 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p----~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l-----~~L 385 (1109)
+++++|.+++.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|++++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5667777776666666655667777777777765555 5555666 67777777777766666666654 666
Q ss_pred ceeeccCCccCCCCchhhhcc-----CCCCeEEccCCcCcccCCccccC-----CCCCceEEecCCcccccCCCCcccCc
Q 001275 386 EYLLVYNNNLLGKLPLEMTEL-----KQLKNISLYNNQFSGVIPQSLGI-----NSSLMQLDFINNSFTGEIPPNLCFGK 455 (1109)
Q Consensus 386 ~~L~l~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~-----~~~L~~L~ls~N~l~~~~p~~~~~~~ 455 (1109)
++|++++|.+++..+..+... ++|+.|+|++|++++..+..++. .++|++|++++|.+++..+..++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~--- 159 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI--- 159 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH---
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH---
Confidence 666666666665555544332 55666666666655444333221 23444444444444432211110
Q ss_pred cceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCCC-CCceEEeecCccCCCCCCccccc-----cccc
Q 001275 456 QLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNP-VLSHLDVSRNNISGAIPSSIGNS-----INLT 529 (1109)
Q Consensus 456 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~-~L~~L~Ls~N~i~~~~p~~~~~l-----~~L~ 529 (1109)
.. +...+ +|++|+|++|+|++..+..+... ++|+
T Consensus 160 -----------------~~-----------------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~ 199 (362)
T 3goz_A 160 -----------------QI-----------------------LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199 (362)
T ss_dssp -----------------HH-----------------------HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred -----------------HH-----------------------HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCC
Confidence 00 11122 45556666666555444433332 4666
Q ss_pred EEeccCCcccCC----cchhhhcc-cccceeecccccccccCC----ccccCCCCccEEEecCccccCCC-------Ccc
Q 001275 530 SIDFSSNKFSGL----MPQELGNL-VSLVTLNISLNHVEGSLP----SQLSKCKNLEVFDVSFNLLNGSI-------PSS 593 (1109)
Q Consensus 530 ~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~ls~N~l~~~~-------p~~ 593 (1109)
+|||++|++++. ++..+..+ ++|++|+|++|++++..+ ..+..+++|+.|+|++|.+.+.. +..
T Consensus 200 ~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~ 279 (362)
T 3goz_A 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT
T ss_pred EEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHH
Confidence 666666666642 33444443 366777777776665433 33455677777777777754322 234
Q ss_pred cccccccceeccccccccCCCcchh
Q 001275 594 LRSWKSLSILKLSENHFTGGIPTFI 618 (1109)
Q Consensus 594 ~~~l~~L~~L~L~~N~l~~~~p~~~ 618 (1109)
+..+++|+.|++++|++.+..+..+
T Consensus 280 ~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 280 FPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp STTCCEEEEECTTSCBCCGGGCHHH
T ss_pred hccCCceEEEecCCCcCCCcchHHH
Confidence 5566777777777777765544433
No 329
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.9e-24 Score=236.26 Aligned_cols=230 Identities=15% Similarity=0.180 Sum_probs=163.4
Q ss_pred CCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEE
Q 001275 358 LSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLD 437 (1109)
Q Consensus 358 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ 437 (1109)
+.++..+++.++.+.+. .....+++|+.|++++|.+.. + ..+..+++|+.|++++|++++. ..++.+++|++|+
T Consensus 18 ~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred HHHHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence 34566677888887754 346789999999999999874 3 3588999999999999999863 4788999999999
Q ss_pred ecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCC
Q 001275 438 FINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGA 517 (1109)
Q Consensus 438 ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~ 517 (1109)
+++|.+++..+..+..+++|++|++++|++++..+..++.++ +|++|++++|++++.
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----------------------~L~~L~L~~n~l~~~ 148 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-----------------------NLTYLNLAHNQLQSL 148 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----------------------TCCEEECCSSCCCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC-----------------------CCCEEECCCCccCcc
Confidence 999999988888889999999999999999866655555544 455555555555544
Q ss_pred CCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCCcccccc
Q 001275 518 IPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSW 597 (1109)
Q Consensus 518 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l 597 (1109)
.+..++.+++|+.|++++|++++..|..++.+++|++|++++|++++..|..+..+++|+.|++++|.+.+. +
T Consensus 149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~ 221 (272)
T 3rfs_A 149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------C 221 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------T
T ss_pred CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------C
Confidence 444555555666666666666555555555666666666666666655555566666666666666666543 3
Q ss_pred cccceeccccccccCCCcchhhhhhh
Q 001275 598 KSLSILKLSENHFTGGIPTFISELEK 623 (1109)
Q Consensus 598 ~~L~~L~L~~N~l~~~~p~~~~~l~~ 623 (1109)
++|+.|+++.|.++|.+|.+++.+..
T Consensus 222 ~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 222 PGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cHHHHHHHHHHhCCCcccCcccccCC
Confidence 35666666667777666666655443
No 330
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=2.5e-25 Score=255.55 Aligned_cols=262 Identities=20% Similarity=0.157 Sum_probs=144.5
Q ss_pred hccccccccCCCCcccccccCCcEEEeecCCCCCcCC----ccccccc-cccEEEcCCCCCCCCCCCccccc-----ccc
Q 001275 268 LDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIP----SSFGLLA-RLSSLDLSENQLSGKIPPELGKC-----KYL 337 (1109)
Q Consensus 268 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l-----~~L 337 (1109)
+++++|.+++.+|..+...++|++|++++|.+++..+ ..|..++ +|++|+|++|++++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566777776666555555567777777777765555 5555666 67777777776665555555554 666
Q ss_pred ceeeccCcccCCCCCccccC----C-CCccEEEccCccccccCchHHHhh-----cccceeeccCCccCCCCchhh----
Q 001275 338 TVLHLYANQLEGEIPDELGQ----L-SNLQDLELFDNRLTGEFPVSIWRI-----ASLEYLLVYNNNLLGKLPLEM---- 403 (1109)
Q Consensus 338 ~~L~L~~N~l~~~~p~~l~~----l-~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~l~~~~~~~~---- 403 (1109)
++|+|++|++++..+..++. + ++|++|+|++|++++..+..+... ++|++|++++|.+++..+..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 66666666666555443332 2 566666666666665555444432 466666666666654333322
Q ss_pred hccC-CCCeEEccCCcCcccCCcccc----CC-CCCceEEecCCcccccC----CCCccc-CccceEEECCCcccccCCC
Q 001275 404 TELK-QLKNISLYNNQFSGVIPQSLG----IN-SSLMQLDFINNSFTGEI----PPNLCF-GKQLRVLNMGQNQFHGPIP 472 (1109)
Q Consensus 404 ~~l~-~L~~L~L~~N~l~~~~p~~~~----~~-~~L~~L~ls~N~l~~~~----p~~~~~-~~~L~~L~L~~N~l~~~~p 472 (1109)
..++ +|++|+|++|++++..+..++ .+ ++|++|||++|.|++.. +..+.. .++|++|+|++|++++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3333 566666666666554443332 22 35555555555555421 222222 1244444444444442221
Q ss_pred cccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCC-------CCCcccccccccEEeccCCcccCCcchh
Q 001275 473 SLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGA-------IPSSIGNSINLTSIDFSSNKFSGLMPQE 545 (1109)
Q Consensus 473 ~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~-------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 545 (1109)
..+. ..+..+++|++|++++|.+.+. ++..+.++++|+.||+++|++.+..+..
T Consensus 243 ~~l~-------------------~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 243 ENLK-------------------LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp HHHH-------------------HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred HHHH-------------------HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 1110 0145566777777777774432 2335666777777777777777655544
Q ss_pred hhc
Q 001275 546 LGN 548 (1109)
Q Consensus 546 ~~~ 548 (1109)
+.+
T Consensus 304 ~~~ 306 (362)
T 3goz_A 304 ISN 306 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 331
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=6.9e-23 Score=225.03 Aligned_cols=202 Identities=28% Similarity=0.262 Sum_probs=124.3
Q ss_pred ceecccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCc
Q 001275 170 QYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDN 249 (1109)
Q Consensus 170 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 249 (1109)
+.+++++++++ .+|..+. +++++|+|++|++++..+..|+++++|++|+|++|+++...+..|.++++|++|++++|
T Consensus 19 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 19 NSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 34444444444 2333332 34555555555555444455555556666666666655554555555666666666666
Q ss_pred ccCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCC
Q 001275 250 NLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPP 329 (1109)
Q Consensus 250 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 329 (1109)
++++..+..+..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|+.+++|+.|++++|++++..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 66555555555566666666666666655555666667777777777777665555667777777777777777765556
Q ss_pred ccccccccceeeccCcccCCCCCccccCCCCccEEEccCcccccc
Q 001275 330 ELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGE 374 (1109)
Q Consensus 330 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 374 (1109)
.|..+++|++|+|++|++++..+..+..+++|+.|+|++|.+...
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 677777777777777777765555666777777777777776543
No 332
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=2.1e-25 Score=253.75 Aligned_cols=269 Identities=16% Similarity=0.181 Sum_probs=142.9
Q ss_pred CCceeeeEEecCCCCcEEEEEecccCCccccCCcccCC--CCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCC
Q 001275 57 TPCQWVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHL--SKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGD 134 (1109)
Q Consensus 57 ~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 134 (1109)
.|.+|.++.|+.. .++.++++++.+. +..+..+ ++++.|++++|.+++..+. +..+++|++|+|++|.+++.
T Consensus 35 vc~~W~~~~~~~~--~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASDES--LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTCST--TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcCch--hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 3567999988642 3556677766554 2334444 6666777777666655444 44566666666666666543
Q ss_pred -CCccccccCccceeccccccccccCCcccccccccceeccccc-ccccc-cccccCCCcccceeecccc-cCCCC-ccc
Q 001275 135 -IPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNN-SLSGS-IPRNVGDLKEVEALWLFSN-RLSGT-IPE 209 (1109)
Q Consensus 135 -~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-~p~ 209 (1109)
+|..+..+++|++|+|++|.+++..|..+.++++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 5555666666666666666665555555555555666665555 44432 3444455555555555555 55432 344
Q ss_pred cccccc-CccEEEeccccccCcCchhcccccccccccccCcccC-CcccccccCCCCcchhcccccc-ccCCCCcccccc
Q 001275 210 SIGNCY-RLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLE-GRINFGSEKCKNLTFLDLSYNR-FSGGISPNLGNC 286 (1109)
Q Consensus 210 ~l~~l~-~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 286 (1109)
.+..++ +|++|++++|.+ .++ +.++..+..+++|++|++++|. +++..+..+..+
T Consensus 189 ~~~~l~~~L~~L~l~~~~~----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRK----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp HHHHSCTTCCEEECCSCGG----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred HHHhcccCCCEEEeCCCcc----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence 444555 555555555521 222 2223333444455555555554 443444455555
Q ss_pred cCCcEEEeecCC-CCCcCCccccccccccEEEcCCCCCCCCCCCccccc-cccceeeccCcccCCCCCccccC
Q 001275 287 SSLTHLDIVGSK-LTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKC-KYLTVLHLYANQLEGEIPDELGQ 357 (1109)
Q Consensus 287 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~ 357 (1109)
++|++|++++|. ++......++.+++|+.|++++| ++ ...+..+ ..++.|++++|++++..|..+++
T Consensus 247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 555555555553 22111124555566666666665 22 1123333 23555556666666666555543
No 333
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=6.3e-23 Score=227.36 Aligned_cols=202 Identities=22% Similarity=0.202 Sum_probs=104.2
Q ss_pred hccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccch
Q 001275 404 TELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWR 483 (1109)
Q Consensus 404 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 483 (1109)
.++++++.+++++|.++ .+|..+. +.++.|++++|.+++..|..+..+++|++|+|++|+|++..+
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------- 72 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV----------- 72 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-----------
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-----------
Confidence 34455555555555555 2333322 345555555555554444444445555555555555443211
Q ss_pred hhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeeccccccc
Q 001275 484 VILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVE 563 (1109)
Q Consensus 484 l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 563 (1109)
...+++|++|++++|+|+ .+|..+..+++|++|+|++|+|++..|..|+.+++|++|+|++|+|+
T Consensus 73 --------------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 73 --------------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp --------------CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred --------------CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 133444555555555554 44555555555555555555555444455555555555555555555
Q ss_pred ccCCccccCCCCccEEEecCccccCCCCcccccccccceeccccccccCCCcchhhhhhhhhhhhcccCcCC
Q 001275 564 GSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIPTFISELEKLLELQLGGNQLG 635 (1109)
Q Consensus 564 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 635 (1109)
+..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+++ .+|..+..+.+|+.|+|++|++.
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 444444555555555555555555333334455555555555555555 45555555555666666666654
No 334
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=8.5e-24 Score=237.35 Aligned_cols=202 Identities=22% Similarity=0.242 Sum_probs=174.1
Q ss_pred CCCCceEEeecCccCCCCCCcc--cccccccEEeccCCcccCCcc----hhhhcccccceeecccccccccCCccccCCC
Q 001275 501 NPVLSHLDVSRNNISGAIPSSI--GNSINLTSIDFSSNKFSGLMP----QELGNLVSLVTLNISLNHVEGSLPSQLSKCK 574 (1109)
Q Consensus 501 ~~~L~~L~Ls~N~i~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 574 (1109)
.++|++|++++|++++..|..+ +.+++|++|+|++|++++..| ..+..+++|++|+|++|++++..|..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3558999999999999999888 889999999999999997655 4456789999999999999988889999999
Q ss_pred CccEEEecCccccCC--C--CcccccccccceeccccccccCCCcc----hhhhhhhhhhhhcccCcCCCCCCCCchhh-
Q 001275 575 NLEVFDVSFNLLNGS--I--PSSLRSWKSLSILKLSENHFTGGIPT----FISELEKLLELQLGGNQLGGEIPPSIGAL- 645 (1109)
Q Consensus 575 ~L~~L~ls~N~l~~~--~--p~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~l~~N~l~g~ip~~~~~l- 645 (1109)
+|++|||++|++.+. + +..+..+++|++|+|++|+++ .+|. .+..+++|++|||++|++++.+|+.++.+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 999999999998752 2 234578999999999999997 4444 35788999999999999998889888887
Q ss_pred --hhhhhhhcccccccccccCcchhhcccCCeEEccCCcccccCCCCCccccceEEeeecccccc
Q 001275 646 --QDLSYALNLSKNGLTGRIPSDLEKLSKLEQLDISSNNLTGTLSPLSNIHSLVEVNVSYNLFTG 708 (1109)
Q Consensus 646 --~~l~~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~~~l~~~~~l~~l~~~~n~l~g 708 (1109)
++| ..|+|++|+|+ .+|..+. ++|++|||++|+|++. |.+..+++|+.|++++|+++.
T Consensus 249 ~~~~L-~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSAL-NSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTC-CCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTSC
T ss_pred CcCcC-CEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCCC
Confidence 577 57999999999 8898886 8999999999999964 557788999999999999874
No 335
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.3e-23 Score=224.89 Aligned_cols=191 Identities=19% Similarity=0.234 Sum_probs=139.3
Q ss_pred CCceeeeEEecCCCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCC
Q 001275 57 TPCQWVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIP 136 (1109)
Q Consensus 57 ~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 136 (1109)
+||.|.|++|.... ..+++++++++ .+|+.+. +++++|+|++|++++..+..|+++++|++|+|++|++++..|
T Consensus 3 ~Cp~~~gC~C~~~~---~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNEGK---KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEGGG---TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCCCC---eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 47899999996432 34677777766 3555554 578888888888887777778888888888888888887777
Q ss_pred ccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeecccccCCCCcccccccccC
Q 001275 137 DNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYR 216 (1109)
Q Consensus 137 ~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 216 (1109)
..|.++++|++|+|++|.+++..+..+..+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..|+.+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 77888888888888888887655566677777777777777777665566677777777777777777666666777777
Q ss_pred ccEEEeccccccCcCchhcccccccccccccCcccCC
Q 001275 217 LQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEG 253 (1109)
Q Consensus 217 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 253 (1109)
|++|+|++|++++..+..|..+++|+.|++++|.++.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 7777777777776666666667777777777776654
No 336
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.2e-22 Score=225.21 Aligned_cols=200 Identities=24% Similarity=0.199 Sum_probs=94.3
Q ss_pred CCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchh
Q 001275 189 DLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFL 268 (1109)
Q Consensus 189 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 268 (1109)
++++++++++++|.++ .+|..+. +++++|+|++|++++..+..|.++++|++|+|++|++++..+. ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 3444444444444444 3333332 3455555555555554455555555555555555555443221 344455555
Q ss_pred ccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccC
Q 001275 269 DLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLE 348 (1109)
Q Consensus 269 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 348 (1109)
+|++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 55555554 33444444555555555555555444444555555555555555555444444444555555555555554
Q ss_pred CCCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCcc
Q 001275 349 GEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNL 395 (1109)
Q Consensus 349 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 395 (1109)
+..+..|..+++|++|+|++|+|+ .+|..+....+|+.|++++|.+
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 333333444445555555554444 2333333333344444443333
No 337
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.89 E-value=3.1e-24 Score=257.83 Aligned_cols=186 Identities=19% Similarity=0.246 Sum_probs=146.1
Q ss_pred CCCceeecccCeEEEEEEeCCCcEEEEEEeeeccccc-------ChHHHHHHHHHHhcCCCCceeeEeeEEecCCceeEE
Q 001275 822 NAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKR-------GSLSMKREIQTIGKIRHRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 822 ~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~-------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 894 (1109)
...++||+|+||+||+|... ++.+|+|+........ ..+++.+|++++++++||||+++..++...+..++|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSYL-DFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEECS-SCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEEC-CCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 44678999999999999544 7788998864332111 134578999999999999999777777777888999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCC
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDK 974 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~ 974 (1109)
|||+++|+|.++++. +..++.|+++||+||| +.+|+||||||+||+++. .+||+|||+++....
T Consensus 418 mE~~~ggsL~~~l~~-----------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~ 481 (540)
T 3en9_A 418 MSYINGKLAKDVIED-----------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNL 481 (540)
T ss_dssp EECCCSEEHHHHSTT-----------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred EECCCCCCHHHHHHH-----------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence 999999999999875 4589999999999999 899999999999999998 999999999997754
Q ss_pred CCCCc-----eeeecccCccccccccccc--CCCCccCcchhhHHHHHHHHhCCCCC
Q 001275 975 SPAST-----TSISVVGTIGYIAPENAFT--TAKSKESDVYSYGVVLLELITRKKAL 1024 (1109)
Q Consensus 975 ~~~~~-----~~~~~~gt~~y~aPE~~~~--~~~~~~sDvwSlGvil~elltg~~p~ 1024 (1109)
..... ......||+.|+|||++.. ..|+..+|+|+..+-..+-+.++.+|
T Consensus 482 ~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY 538 (540)
T 3en9_A 482 DEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY 538 (540)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred ccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 32111 1134689999999999987 66788899999999998888887665
No 338
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.6e-23 Score=222.89 Aligned_cols=196 Identities=16% Similarity=0.166 Sum_probs=120.4
Q ss_pred CccEeecCCCcccccCCCCCCCCCCCcEeeccCcc-ccCCCCccccccCccceecccc-ccccccCCcccccccccceec
Q 001275 96 KLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNG-FTGDIPDNFENLQNLQYLNLYG-NLLDGEIPEPLFRILGLQYVF 173 (1109)
Q Consensus 96 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~L~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~ 173 (1109)
+|++|+|++|++++..+..|+.+++|++|++++|+ +++..+..|.++++|++|+|++ |++++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 77888888888887666678888888888888886 7765556777788888888877 777754445666666666666
Q ss_pred ccccccccccccccCCCcccc---eeecccc-cCCCCcccccccccCccEEEeccccccCcCchhcccccccc-cccccC
Q 001275 174 LNNNSLSGSIPRNVGDLKEVE---ALWLFSN-RLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLV-YLDVGD 248 (1109)
Q Consensus 174 Ls~n~l~~~~p~~l~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~-~L~L~~ 248 (1109)
+++|++++ +|. ++.+++|+ +|++++| +++ +..+..|.++++|+ .|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~------------------------~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT------------------------SIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC------------------------EECTTTTTTTBSSEEEEECCS
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchh------------------------hcCcccccchhcceeEEEcCC
Confidence 66666664 443 55554444 5555555 444 44444444445555 555555
Q ss_pred cccCCcccccccCCCCcchhcccccc-ccCCCCcccccc-cCCcEEEeecCCCCCcCCccccccccccEEEcCCC
Q 001275 249 NNLEGRINFGSEKCKNLTFLDLSYNR-FSGGISPNLGNC-SSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSEN 321 (1109)
Q Consensus 249 N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 321 (1109)
|+++...+..+.. ++|++|+|++|+ +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 166 n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 166 NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 5544322223333 455555666553 554444556666 6666666666666643332 4556667766655
No 339
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=7.3e-25 Score=254.33 Aligned_cols=192 Identities=20% Similarity=0.194 Sum_probs=94.7
Q ss_pred CCCcccceeecccccCCC----CcccccccccCccEEEeccccccCcCchhccc----c---------cccccccccCcc
Q 001275 188 GDLKEVEALWLFSNRLSG----TIPESIGNCYRLQELYLNENKLMGFLPESLSN----L---------ENLVYLDVGDNN 250 (1109)
Q Consensus 188 ~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~----l---------~~L~~L~L~~N~ 250 (1109)
..+++|++|+|++|++++ .+|..+..+++|++|+|++|.++...+..+.. + ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 566677777777777665 35666667777777777777765443333332 2 555555555555
Q ss_pred cCC-ccc---ccccCCCCcchhccccccccC-----CCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCC
Q 001275 251 LEG-RIN---FGSEKCKNLTFLDLSYNRFSG-----GISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSEN 321 (1109)
Q Consensus 251 l~~-~~~---~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 321 (1109)
++. ..+ ..+..+++|++|+|++|+++. ..+..+..+++|+.|+|++|.++...
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g------------------ 232 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG------------------ 232 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH------------------
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH------------------
Confidence 541 222 223344444444444444441 11223444444444444444443000
Q ss_pred CCCCCCCCccccccccceeeccCcccCCC----CCccc--cCCCCccEEEccCccccc----cCchHH-Hhhcccceeec
Q 001275 322 QLSGKIPPELGKCKYLTVLHLYANQLEGE----IPDEL--GQLSNLQDLELFDNRLTG----EFPVSI-WRIASLEYLLV 390 (1109)
Q Consensus 322 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~----~p~~l--~~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~L~l 390 (1109)
.+.+|..+..+++|+.|+|++|.+++. +|..+ +.+++|++|+|++|++++ .+|..+ .++++|++|++
T Consensus 233 --~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 233 --SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp --HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred --HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 023334444444444444444444432 23333 225555555555555554 244444 33455555555
Q ss_pred cCCccCCCC
Q 001275 391 YNNNLLGKL 399 (1109)
Q Consensus 391 ~~N~l~~~~ 399 (1109)
++|.+++..
T Consensus 311 ~~N~l~~~~ 319 (386)
T 2ca6_A 311 NGNRFSEED 319 (386)
T ss_dssp TTSBSCTTS
T ss_pred cCCcCCcch
Confidence 555555444
No 340
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=8.4e-25 Score=253.80 Aligned_cols=272 Identities=21% Similarity=0.241 Sum_probs=181.0
Q ss_pred CCcccccccccceeccccccccccc----ccccCCCcccceeecccc---cCCCCccccc-------ccccCccEEEecc
Q 001275 159 IPEPLFRILGLQYVFLNNNSLSGSI----PRNVGDLKEVEALWLFSN---RLSGTIPESI-------GNCYRLQELYLNE 224 (1109)
Q Consensus 159 ~p~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~N---~l~~~~p~~l-------~~l~~L~~L~L~~ 224 (1109)
++..+..+++|++|+|++|++++.. +..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3334444444444444444444332 233555666666666664 3334445444 5677788888888
Q ss_pred ccccC----cCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCC
Q 001275 225 NKLMG----FLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLT 300 (1109)
Q Consensus 225 N~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 300 (1109)
|++++ .+|..+.++++|++|+|++|++++..+..+... |.. +..|++.+. .++|++|++++|+++
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~--l~~~~~~~~-------~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQE--LAVNKKAKN-------APPLRSIICGRNRLE 172 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHH--HHHHHHHHT-------CCCCCEEECCSSCCT
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--HHH--Hhhhhhccc-------CCCCcEEECCCCCCC
Confidence 87776 356667777777777777777754333222111 100 011111110 177888888888887
Q ss_pred -CcCC---ccccccccccEEEcCCCCCC--C---CCCCccccccccceeeccCcccC----CCCCccccCCCCccEEEcc
Q 001275 301 -GSIP---SSFGLLARLSSLDLSENQLS--G---KIPPELGKCKYLTVLHLYANQLE----GEIPDELGQLSNLQDLELF 367 (1109)
Q Consensus 301 -~~~~---~~~~~l~~L~~L~Ls~N~l~--~---~~p~~l~~l~~L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~L~ 367 (1109)
+.++ ..+..+++|++|++++|+++ | ..|..+..+++|+.|+|++|.++ +.+|..+..+++|++|+|+
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 3344 46677889999999999887 2 34557889999999999999996 5678889999999999999
Q ss_pred Ccccccc----CchHHHh--hcccceeeccCCccCC----CCchhh-hccCCCCeEEccCCcCcccCC--cccc-CCCCC
Q 001275 368 DNRLTGE----FPVSIWR--IASLEYLLVYNNNLLG----KLPLEM-TELKQLKNISLYNNQFSGVIP--QSLG-INSSL 433 (1109)
Q Consensus 368 ~N~l~~~----~~~~~~~--l~~L~~L~l~~N~l~~----~~~~~~-~~l~~L~~L~L~~N~l~~~~p--~~~~-~~~~L 433 (1109)
+|++++. ++..+.. +++|++|+|++|.+++ .+|..+ .++++|+.|++++|++++..+ ..+. .++.+
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~ 332 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 332 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhc
Confidence 9999876 4556644 8999999999999997 477777 668999999999999997764 3322 23444
Q ss_pred ceEEecCC
Q 001275 434 MQLDFINN 441 (1109)
Q Consensus 434 ~~L~ls~N 441 (1109)
+.+++..+
T Consensus 333 ~~~~l~~~ 340 (386)
T 2ca6_A 333 GRGELDEL 340 (386)
T ss_dssp TCCEECCC
T ss_pred Ccchhhhc
Confidence 45555443
No 341
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=6.6e-23 Score=230.05 Aligned_cols=224 Identities=18% Similarity=0.209 Sum_probs=140.1
Q ss_pred CccEEEccCccccccCch---HHHhhcccceeeccCCccCCCCchhh--hccCCCCeEEccCCcCcccCC----ccccCC
Q 001275 360 NLQDLELFDNRLTGEFPV---SIWRIASLEYLLVYNNNLLGKLPLEM--TELKQLKNISLYNNQFSGVIP----QSLGIN 430 (1109)
Q Consensus 360 ~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~~ 430 (1109)
.++.|.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|+|++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466777777766532111 12234567777777777777777776 777777777777777776544 233456
Q ss_pred CCCceEEecCCcccccCCCCcccCccceEEECCCcccccC--C--CcccCCCCccchhhccCcccCCCCCCCCCCCCCce
Q 001275 431 SSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGP--I--PSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSH 506 (1109)
Q Consensus 431 ~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~ 506 (1109)
++|++|++++|.+++..|..+..+++|++|+|++|++.+. + +.. +..+++|++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-----------------------~~~l~~L~~ 201 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC-----------------------PHKFPAIQN 201 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC-----------------------TTSSCCCCS
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh-----------------------hhcCCCCCE
Confidence 6777777777777766666666777777777777766431 1 111 234455555
Q ss_pred EEeecCccCCCCCC----cccccccccEEeccCCcccCCcchhhhcc---cccceeecccccccccCCccccCCCCccEE
Q 001275 507 LDVSRNNISGAIPS----SIGNSINLTSIDFSSNKFSGLMPQELGNL---VSLVTLNISLNHVEGSLPSQLSKCKNLEVF 579 (1109)
Q Consensus 507 L~Ls~N~i~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 579 (1109)
|+|++|+++ .+|. .++++++|++|||++|++++..|..++.+ ++|++|+|++|+|+ .+|..+. ++|+.|
T Consensus 202 L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L 277 (310)
T 4glp_A 202 LALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVL 277 (310)
T ss_dssp CBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred EECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence 666666654 2222 23455666666666666666656555555 46777777777776 5566554 677777
Q ss_pred EecCccccCCCCcccccccccceeccccccccC
Q 001275 580 DVSFNLLNGSIPSSLRSWKSLSILKLSENHFTG 612 (1109)
Q Consensus 580 ~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 612 (1109)
||++|+|++. |. +..+++|+.|+|++|+++.
T Consensus 278 ~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 278 DLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 7777777742 33 5666777777777777763
No 342
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=7.5e-24 Score=240.93 Aligned_cols=253 Identities=23% Similarity=0.264 Sum_probs=189.1
Q ss_pred CcEeeccCccccCCCCcccccc--CccceeccccccccccCCcccccccccceecccccccccc-cccccCCCcccceee
Q 001275 121 LEYLDLSTNGFTGDIPDNFENL--QNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGS-IPRNVGDLKEVEALW 197 (1109)
Q Consensus 121 L~~L~Ls~n~l~~~~p~~l~~L--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ 197 (1109)
++.||+++|.+. |..+..+ +++++|++++|.+.+..+. ++.+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 556666666554 3445555 6677777777766654433 55667777777777777655 666777778888888
Q ss_pred cccccCCCCcccccccccCccEEEeccc-cccCc-CchhcccccccccccccCc-ccCCc-ccccccCCC-Ccchhcccc
Q 001275 198 LFSNRLSGTIPESIGNCYRLQELYLNEN-KLMGF-LPESLSNLENLVYLDVGDN-NLEGR-INFGSEKCK-NLTFLDLSY 272 (1109)
Q Consensus 198 L~~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~-~~~~l~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~Ls~ 272 (1109)
|++|.+++..|..++.+++|++|+|++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8888777777777778888888888888 56653 5666788888888888888 88764 466678888 999999999
Q ss_pred c--ccc-CCCCcccccccCCcEEEeecCC-CCCcCCccccccccccEEEcCCCC-CCCCCCCccccccccceeeccCccc
Q 001275 273 N--RFS-GGISPNLGNCSSLTHLDIVGSK-LTGSIPSSFGLLARLSSLDLSENQ-LSGKIPPELGKCKYLTVLHLYANQL 347 (1109)
Q Consensus 273 N--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l 347 (1109)
| .++ +.++..+..+++|++|++++|. +++..+..++.+++|++|++++|. +.......++++++|+.|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 9 455 4556777889999999999999 787888899999999999999996 33222236889999999999999 5
Q ss_pred CCCCCccccCC-CCccEEEccCccccccCchHHHh
Q 001275 348 EGEIPDELGQL-SNLQDLELFDNRLTGEFPVSIWR 381 (1109)
Q Consensus 348 ~~~~p~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~ 381 (1109)
... .+..+ .+++.|++++|++++..|..+..
T Consensus 284 ~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 284 PDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 432 33333 24677779999999988876554
No 343
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=4.1e-22 Score=214.62 Aligned_cols=198 Identities=19% Similarity=0.188 Sum_probs=153.1
Q ss_pred CCCcEeeccCccccCCCCccccccCccceecccccc-ccccCCcccccccccceecccccccccccccccCCCcccceee
Q 001275 119 SALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNL-LDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALW 197 (1109)
Q Consensus 119 ~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 197 (1109)
++|++|+|++|++++..+..|+++++|++|+|++|. ++...+..+.. +++|++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~------------------------l~~L~~L~ 86 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN------------------------LSKVTHIE 86 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEES------------------------CTTCCEEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCC------------------------CcCCcEEE
Confidence 478899999999987666688888888888888886 66333334444 44555555
Q ss_pred ccc-ccCCCCcccccccccCccEEEeccccccCcCchhcccccccc---cccccCc-ccCCcccccccCCCCcc-hhccc
Q 001275 198 LFS-NRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLV---YLDVGDN-NLEGRINFGSEKCKNLT-FLDLS 271 (1109)
Q Consensus 198 L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~---~L~L~~N-~l~~~~~~~~~~l~~L~-~L~Ls 271 (1109)
+++ |++++..+..|.++++|++|++++|++++ +|. |..+++|+ +|++++| ++++..+..|..+++|+ +|+++
T Consensus 87 l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 87 IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred CCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 554 55554445566777777777777777776 444 77777777 9999999 99988888899999999 99999
Q ss_pred cccccCCCCcccccccCCcEEEeecCC-CCCcCCcccccc-ccccEEEcCCCCCCCCCCCccccccccceeeccCcc
Q 001275 272 YNRFSGGISPNLGNCSSLTHLDIVGSK-LTGSIPSSFGLL-ARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQ 346 (1109)
Q Consensus 272 ~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 346 (1109)
+|+++...+..|.. ++|+.|++++|+ +++..+..|..+ ++|+.|++++|++++ +|.. .+++|+.|+++++.
T Consensus 165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 99999444444555 899999999995 997778889999 999999999999995 4443 57889999988763
No 344
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=3.1e-22 Score=224.00 Aligned_cols=192 Identities=22% Similarity=0.299 Sum_probs=94.8
Q ss_pred ccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchh
Q 001275 405 ELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRV 484 (1109)
Q Consensus 405 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l 484 (1109)
.+++|+.|++++|.++. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|++++. +.+..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 34444555555554442 22 24444445555555554443222 44444555555555554432 133444444444
Q ss_pred hccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccc
Q 001275 485 ILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEG 564 (1109)
Q Consensus 485 ~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 564 (1109)
++++|++++. +.+..+++|++|++++|++++..+ ++.+++|+.|++++|++++..+ +..+++|+.|++++|++++
T Consensus 113 ~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 113 DLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp ECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCCCCc-hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 4444444432 225555555555665555554322 5555556666666665554322 5555555555555555553
Q ss_pred cCCccccCCCCccEEEecCccccCCCCcccccccccceecccccccc
Q 001275 565 SLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFT 611 (1109)
Q Consensus 565 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 611 (1109)
..+ +..+++|+.|++++|++++.. .+..+++|+.|+|++|+++
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 322 555555555566555555332 2555555555555555555
No 345
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1e-21 Score=213.12 Aligned_cols=158 Identities=17% Similarity=0.209 Sum_probs=100.3
Q ss_pred cceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCC-CCCCCCCceEEeecCccCCCCCCcccccccccEEecc
Q 001275 456 QLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPE-FSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFS 534 (1109)
Q Consensus 456 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls 534 (1109)
+++.|+|++|++.+..+..+..+++|++|++++|++++..+. |..+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 344444444444444444444444444444444444444443 5566667777777777766666666677777777777
Q ss_pred CCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCCcccccccccceeccccccccCC
Q 001275 535 SNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGG 613 (1109)
Q Consensus 535 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 613 (1109)
+|+|++..+..++.+++|++|+|++|+|++..|..+..+++|+.|||++|+|++..|..|..+++|+.|+|++|++++.
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7777765555566777777777777777755555677777777777777777766666677777777777777777654
No 346
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2e-21 Score=217.48 Aligned_cols=216 Identities=20% Similarity=0.309 Sum_probs=132.9
Q ss_pred ccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEcc
Q 001275 336 YLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLY 415 (1109)
Q Consensus 336 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~ 415 (1109)
.+..+.+..+.+.+.+ .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 20 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS 93 (308)
T ss_dssp HHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECC
T ss_pred HHHHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEcc
Confidence 3344445555554322 23456666677777666663 33 45566666666666666654333 5566666666666
Q ss_pred CCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCC
Q 001275 416 NNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGAL 495 (1109)
Q Consensus 416 ~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 495 (1109)
+|++++. ..++.+++|++|++++|.+++. + . +..+++|+.|++++|++++..
T Consensus 94 ~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~------------------------l~~l~~L~~L~l~~n~l~~~~ 145 (308)
T 1h6u_A 94 GNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-P------------------------LAGLSNLQVLYLDLNQITNIS 145 (308)
T ss_dssp SCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-G------------------------GTTCTTCCEEECCSSCCCCCG
T ss_pred CCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-h------------------------hcCCCCCCEEECCCCccCcCc
Confidence 6666542 2345555555555555555432 1 1 444455555555555554433
Q ss_pred CCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCC
Q 001275 496 PEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKN 575 (1109)
Q Consensus 496 ~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 575 (1109)
+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|++|+|++|++++..| +..+++
T Consensus 146 ~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 218 (308)
T 1h6u_A 146 P-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSN 218 (308)
T ss_dssp G-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTT
T ss_pred c-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCC
Confidence 3 6667778888888888875433 7778888888888888876543 7778888888888888885443 777888
Q ss_pred ccEEEecCccccCCCCcc
Q 001275 576 LEVFDVSFNLLNGSIPSS 593 (1109)
Q Consensus 576 L~~L~ls~N~l~~~~p~~ 593 (1109)
|+.|++++|.+++ .|..
T Consensus 219 L~~L~l~~N~i~~-~~~~ 235 (308)
T 1h6u_A 219 LFIVTLTNQTITN-QPVF 235 (308)
T ss_dssp CCEEEEEEEEEEC-CCEE
T ss_pred CCEEEccCCeeec-CCee
Confidence 8888888888874 4433
No 347
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=5.1e-21 Score=201.28 Aligned_cols=187 Identities=22% Similarity=0.309 Sum_probs=114.5
Q ss_pred CCCceeeeEEecCCCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCC
Q 001275 56 STPCQWVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDI 135 (1109)
Q Consensus 56 ~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 135 (1109)
.+.|.|.+|.|+.... ..+|..+ .++|++|++++|++++..+..++.+++|++|+|++|++++..
T Consensus 4 ~C~C~~~~v~c~~~~l-------------~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 4 RCSCSGTTVECYSQGR-------------TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp TCEEETTEEECCSSCC-------------SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEECCCEEEecCCCc-------------cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence 4568999999975321 1233322 357888888888888666666778888888888888887665
Q ss_pred CccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeecccccCCCCccccccccc
Q 001275 136 PDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCY 215 (1109)
Q Consensus 136 p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 215 (1109)
+..|.++++|++|+|++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l------------ 136 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL------------ 136 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC------------
T ss_pred hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc------------
Confidence 56677777777777777777744444445555555555555555544444444445555555555544
Q ss_pred CccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCCCCcccccccC
Q 001275 216 RLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSS 288 (1109)
Q Consensus 216 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 288 (1109)
++..+..|..+++|++|++++|.+.+ .+++|++|+++.|+++|.+|..++.++.
T Consensus 137 ------------~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 137 ------------KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------------SCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------------ceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 44444444555555555555554432 2345666666666666666666655543
No 348
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=2.5e-21 Score=232.36 Aligned_cols=187 Identities=28% Similarity=0.443 Sum_probs=92.6
Q ss_pred CCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhcc
Q 001275 408 QLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILK 487 (1109)
Q Consensus 408 ~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~ 487 (1109)
+|+.|++++|.+++ +|..+. ++|++|+|++|.|+ .+| ..+++|++|+|++|+|++ +|. +.. +
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~------- 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--S------- 121 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--T-------
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--C-------
Confidence 66667777666665 454442 55666666666666 444 234566666666666654 443 322 3
Q ss_pred CcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCC
Q 001275 488 QNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLP 567 (1109)
Q Consensus 488 ~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 567 (1109)
|++|+|++|+|++ +|. .+++|+.|+|++|+|++ +|. .+++|++|+|++|+|++ +|
T Consensus 122 ----------------L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp 176 (571)
T 3cvr_A 122 ----------------LKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LP 176 (571)
T ss_dssp ----------------CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred ----------------CCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cc
Confidence 3444444444443 232 23444444444444443 232 23444444444444443 33
Q ss_pred ccccCCCCccEEEecCccccCCCCccccccccc-------ceeccccccccCCCcchhhhhhhhhhhhcccCcCCCCCCC
Q 001275 568 SQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSL-------SILKLSENHFTGGIPTFISELEKLLELQLGGNQLGGEIPP 640 (1109)
Q Consensus 568 ~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~ 640 (1109)
. ++ ++|+.|+|++|+|+ .+|. |.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|.
T Consensus 177 ~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 177 E-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp C-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred h-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 3 33 44555555555554 3444 332 34 55555555555 4555555555555555555555555555
Q ss_pred Cchhh
Q 001275 641 SIGAL 645 (1109)
Q Consensus 641 ~~~~l 645 (1109)
.++.+
T Consensus 249 ~l~~l 253 (571)
T 3cvr_A 249 SLSQQ 253 (571)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55444
No 349
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=1e-21 Score=235.59 Aligned_cols=189 Identities=27% Similarity=0.407 Sum_probs=130.5
Q ss_pred CCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeec
Q 001275 432 SLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSR 511 (1109)
Q Consensus 432 ~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~ 511 (1109)
+++.|++++|+|++ +|..+. ++|++|+|++|+|+ .+| ..+++|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-------------------------~ip--~~l~~L~~L~Ls~ 109 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-------------------------SLP--ELPASLEYLDACD 109 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-------------------------CCC--CCCTTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-------------------------ccc--cccCCCCEEEccC
Confidence 56666666666664 444332 45555555555554 222 2346788888888
Q ss_pred CccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCC
Q 001275 512 NNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIP 591 (1109)
Q Consensus 512 N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 591 (1109)
|+|++ +|. +.+ +|+.|+|++|+|++ +|. .+++|+.|+|++|+|++ +|. .+++|+.|+|++|+|++ +|
T Consensus 110 N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp 176 (571)
T 3cvr_A 110 NRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LP 176 (571)
T ss_dssp SCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred CCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cc
Confidence 88886 666 665 88999999999887 565 67888888888888885 665 56788888888888885 67
Q ss_pred cccccccccceeccccccccCCCcchhhhhhhh-------hhhhcccCcCCCCCCCCchhhhhhhhhhcccccccccccC
Q 001275 592 SSLRSWKSLSILKLSENHFTGGIPTFISELEKL-------LELQLGGNQLGGEIPPSIGALQDLSYALNLSKNGLTGRIP 664 (1109)
Q Consensus 592 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-------~~L~l~~N~l~g~ip~~~~~l~~l~~~L~L~~N~l~g~ip 664 (1109)
. |. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..++.+++| ..|+|++|.|+|.+|
T Consensus 177 ~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L-~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 177 E-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPT-CTIILEDNPLSSRIR 247 (571)
T ss_dssp C-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTT-EEEECCSSSCCHHHH
T ss_pred h-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCC-CEEEeeCCcCCCcCH
Confidence 6 65 78888888888888 6776 544 56 66677777766 566666666666 356666666666666
Q ss_pred cchhhccc
Q 001275 665 SDLEKLSK 672 (1109)
Q Consensus 665 ~~l~~l~~ 672 (1109)
..+.+++.
T Consensus 248 ~~l~~l~~ 255 (571)
T 3cvr_A 248 ESLSQQTA 255 (571)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 66666544
No 350
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=5.5e-21 Score=218.20 Aligned_cols=220 Identities=18% Similarity=0.136 Sum_probs=115.7
Q ss_pred CccEEEccCccccccCchHHHhhcccceeeccCCccCCCCc-hhhhccCCCCe-EEccCCcCcccCCccccCCCCCceEE
Q 001275 360 NLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLP-LEMTELKQLKN-ISLYNNQFSGVIPQSLGINSSLMQLD 437 (1109)
Q Consensus 360 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~~~~L~~L~ 437 (1109)
++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++++. +.+++|+++...|..|..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 34444444444443222233444444444444444433332 23455555443 44455666655566666666666666
Q ss_pred ecCCcccccCCCCcccCccceEEECCC-cccccCCCcccCCCCccchhhccCcccCCCCCCCCCC-CCCceEEeecCccC
Q 001275 438 FINNSFTGEIPPNLCFGKQLRVLNMGQ-NQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKN-PVLSHLDVSRNNIS 515 (1109)
Q Consensus 438 ls~N~l~~~~p~~~~~~~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~-~~L~~L~Ls~N~i~ 515 (1109)
+++|++++..+..+....++..|++.+ |++....+.. |..+ ..++.|++++|+|+
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~-----------------------f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS-----------------------FVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS-----------------------STTSBSSCEEEECCSSCCC
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccc-----------------------hhhcchhhhhhcccccccc
Confidence 666666655444455555556666543 3444222222 2222 24666777777776
Q ss_pred CCCCCcccccccccEEeccC-CcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCc-cccCCCCcc
Q 001275 516 GAIPSSIGNSINLTSIDFSS-NKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFN-LLNGSIPSS 593 (1109)
Q Consensus 516 ~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N-~l~~~~p~~ 593 (1109)
.+|..+....+|+.|++++ |+++...+..|..+++|++|+|++|+|+...+..+. +|+.|.+.++ +++ .+| .
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~-~lP-~ 241 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLK-KLP-T 241 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCC-CCC-C
T ss_pred -CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcC-cCC-C
Confidence 3444444556677777764 555543334567777777777777777733333343 4444444333 333 566 3
Q ss_pred cccccccceeccccc
Q 001275 594 LRSWKSLSILKLSEN 608 (1109)
Q Consensus 594 ~~~l~~L~~L~L~~N 608 (1109)
+..+++|+.++++++
T Consensus 242 l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 242 LEKLVALMEASLTYP 256 (350)
T ss_dssp TTTCCSCCEEECSCH
T ss_pred chhCcChhhCcCCCC
Confidence 667777777777654
No 351
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=8.9e-21 Score=216.49 Aligned_cols=240 Identities=18% Similarity=0.122 Sum_probs=125.9
Q ss_pred cEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCc-ccccccccce-eccc
Q 001275 98 QTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPE-PLFRILGLQY-VFLN 175 (1109)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~-L~Ls 175 (1109)
++++-++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+|. .+.++++|++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45566666666 556554 35666777777776644444566666666666666666544443 2334444332 3333
Q ss_pred ccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccC-cccCCc
Q 001275 176 NNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGD-NNLEGR 254 (1109)
Q Consensus 176 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~ 254 (1109)
+|+++ ...|..|..+++|++|++++|+++...+..+....++..|++.+ |++...
T Consensus 89 ~N~l~------------------------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 89 ANNLL------------------------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144 (350)
T ss_dssp ETTCC------------------------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred CCccc------------------------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence 34444 33444444444444444444444444444444444444444433 334433
Q ss_pred ccccccCCC-CcchhccccccccCCCCcccccccCCcEEEeec-CCCCCcCCccccccccccEEEcCCCCCCCCCCCccc
Q 001275 255 INFGSEKCK-NLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVG-SKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELG 332 (1109)
Q Consensus 255 ~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 332 (1109)
.+..|..+. .+++|+|++|+|+. ++.......+|+.|++++ |.++...+..|..+++|++|||++|+|+...+..|.
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~ 223 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT
T ss_pred cccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc
Confidence 333343332 45556666666653 333333445666666654 455544445667777777777777777744344444
Q ss_pred cccccceeeccCcccCCCCCccccCCCCccEEEccCc
Q 001275 333 KCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDN 369 (1109)
Q Consensus 333 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 369 (1109)
++++|+.+++ +.++ .+| .+..+++|+.+++.++
T Consensus 224 ~L~~L~~l~~--~~l~-~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 224 NLKKLRARST--YNLK-KLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TCCEEECTTC--TTCC-CCC-CTTTCCSCCEEECSCH
T ss_pred cchHhhhccC--CCcC-cCC-CchhCcChhhCcCCCC
Confidence 4444433332 2233 455 3666777777777654
No 352
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.9e-20 Score=196.91 Aligned_cols=156 Identities=18% Similarity=0.201 Sum_probs=100.7
Q ss_pred CCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCcc
Q 001275 498 FSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLE 577 (1109)
Q Consensus 498 ~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 577 (1109)
|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..++.+++|++|++++|++++..+..+..+++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 127 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCC
Confidence 34455566666666666654445556666666666666666655555566666666666666666655555566777777
Q ss_pred EEEecCccccCCCCcccccccccceeccccccccCCCcchhhhhhhhhhhhcccCcCCCCCCCCchhhhhhhhhhccccc
Q 001275 578 VFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIPTFISELEKLLELQLGGNQLGGEIPPSIGALQDLSYALNLSKN 657 (1109)
Q Consensus 578 ~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~l~~l~~~L~L~~N 657 (1109)
.|++++|++++..+..+..+++|+.|++++|.+.+.. ++|+.|+++.|+++|.+|++++.+.. ++...
T Consensus 128 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~L~~~~n~~~g~ip~~~~~l~~-----~~~~C 195 (208)
T 2o6s_A 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNSAGSVAP-----DSAKC 195 (208)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------TTTHHHHHHHHHCTTTBBCTTSSBCT-----TCSBB
T ss_pred EEECCCCccceeCHHHhccCCCccEEEecCCCeecCC-------CCHHHHHHHHHhCCceeeccCccccC-----Ccccc
Confidence 7777777777555555677777777777777776543 35778888888888888888877653 33444
Q ss_pred ccccccCc
Q 001275 658 GLTGRIPS 665 (1109)
Q Consensus 658 ~l~g~ip~ 665 (1109)
...|..+.
T Consensus 196 ~~~~~~~~ 203 (208)
T 2o6s_A 196 SGSGKPVR 203 (208)
T ss_dssp TTTCCBGG
T ss_pred ccCCCcce
Confidence 44444443
No 353
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.83 E-value=4.2e-21 Score=211.26 Aligned_cols=151 Identities=14% Similarity=0.115 Sum_probs=119.5
Q ss_pred HHHHhhCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccc-----------------cChHHHHHHHHHHhcCCCC
Q 001275 814 VIEATENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHK-----------------RGSLSMKREIQTIGKIRHR 876 (1109)
Q Consensus 814 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~-----------------~~~~~~~~E~~~l~~l~h~ 876 (1109)
.......|.+.+.||+|+||.||+|...+|+.||+|.+...... .....+.+|++++++++
T Consensus 85 ~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~-- 162 (282)
T 1zar_A 85 LVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ-- 162 (282)
T ss_dssp HHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--
Confidence 33444556677999999999999998877999999998532211 12346889999999999
Q ss_pred ceeeEeeEEecCCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeC
Q 001275 877 NLVRLEDFWLRKDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLD 956 (1109)
Q Consensus 877 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~ 956 (1109)
| +++.+++.. +..++||||+++|+|.+ +.. .....++.|+++|++||| +.+|+||||||+||+++
T Consensus 163 ~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~---------~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~ 227 (282)
T 1zar_A 163 G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRV---------ENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS 227 (282)
T ss_dssp T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC---------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE
T ss_pred C-CCcCeEEec-cceEEEEEecCCCcHHH-cch---------hhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE
Confidence 4 666665543 56799999999999988 422 124479999999999999 89999999999999999
Q ss_pred CCCcEEEecccCCcccCCCCCCceeeecccCcccccccccc
Q 001275 957 SEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAF 997 (1109)
Q Consensus 957 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~ 997 (1109)
++.+||+|||+|+.. ..|+|||++.
T Consensus 228 -~~~vkl~DFG~a~~~---------------~~~~a~e~l~ 252 (282)
T 1zar_A 228 -EEGIWIIDFPQSVEV---------------GEEGWREILE 252 (282)
T ss_dssp -TTEEEECCCTTCEET---------------TSTTHHHHHH
T ss_pred -CCcEEEEECCCCeEC---------------CCCCHHHHHH
Confidence 999999999998733 3568888764
No 354
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=9.2e-21 Score=236.16 Aligned_cols=260 Identities=20% Similarity=0.173 Sum_probs=88.6
Q ss_pred cCChhhHHHHHHHHHhccCCCCcccCCCCCCCCCCceeeeEEecCCCCcEEEEEecccCCccccCCcccCCCCccEeecC
Q 001275 24 NALNGDGVALLSLMRHWNSVPPLIISSWNSSDSTPCQWVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLS 103 (1109)
Q Consensus 24 ~~~~~~~~all~~~~~~~~~~~~~l~sW~~~~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~ 103 (1109)
+....++++|+++..+.....+..-..|.......+.|.+++++. .+|+.++|.++++... +.. .|+.++|+
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls 199 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQA-----LLQHKKLS 199 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhh-----HhhcCccC
Confidence 345678899999999886555555567866555668899998865 5688999988777663 322 23444555
Q ss_pred CCcccc---------cCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecc
Q 001275 104 SNNFSG---------NIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFL 174 (1109)
Q Consensus 104 ~n~l~~---------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 174 (1109)
.|.+.+ ..|..+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..+.++++|++|+|
T Consensus 200 ~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 277 (727)
T 4b8c_D 200 QYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDL 277 (727)
T ss_dssp ----------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEEC
T ss_pred cccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeC
Confidence 554432 23444555555555555555555 44544555555555555555555 55555555555555555
Q ss_pred cccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCc
Q 001275 175 NNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGR 254 (1109)
Q Consensus 175 s~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 254 (1109)
++|+|+ .+|..|+++++|++|+|++|.++ .+|..|+++++|++|+|++|.|++.+|..+..+..
T Consensus 278 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-------------- 341 (727)
T 4b8c_D 278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV-------------- 341 (727)
T ss_dssp TTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH--------------
T ss_pred cCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcch--------------
Confidence 555555 44555555555555555555554 44444555555555555555555554444433321
Q ss_pred ccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecC--------CCCCcCCccccccccccEEEcCCCCCC
Q 001275 255 INFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGS--------KLTGSIPSSFGLLARLSSLDLSENQLS 324 (1109)
Q Consensus 255 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 324 (1109)
.+..|+|++|.+++.+|.. |+.|++++| .+.+..+..+..+..+....+++|-+.
T Consensus 342 ---------~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 342 ---------TGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------HHHHHHHHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred ---------hhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 1123445555555444432 233334433 333344445556667777788888765
No 355
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=4.1e-20 Score=230.25 Aligned_cols=187 Identities=20% Similarity=0.234 Sum_probs=102.7
Q ss_pred CCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeec
Q 001275 432 SLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSR 511 (1109)
Q Consensus 432 ~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~ 511 (1109)
.++.|+|++|.+... +. ..|+.++|+.|.|. .++++.|++.-....+..++.|+.|+|++
T Consensus 174 ~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls~~~i~--------------~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~ 233 (727)
T 4b8c_D 174 LTPKIELFANGKDEA-NQ-----ALLQHKKLSQYSID--------------EDDDIENRMVMPKDSKYDDQLWHALDLSN 233 (727)
T ss_dssp --------------------------------------------------------------------CCCCCCEEECTT
T ss_pred ccceEEeeCCCCCcc-hh-----hHhhcCccCccccc--------------CccccccceecChhhhccCCCCcEEECCC
Confidence 345555555555431 21 22445555555544 22344455542222366777777777777
Q ss_pred CccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCC
Q 001275 512 NNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIP 591 (1109)
Q Consensus 512 N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 591 (1109)
|+|. .+|..+.++++|++|+|++|+|+ .+|..|++|++|++|+|++|+|+ .+|..|+.|++|++|+|++|.|+ .+|
T Consensus 234 n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp 309 (727)
T 4b8c_D 234 LQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLP 309 (727)
T ss_dssp SCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCC
T ss_pred CCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccC
Confidence 7777 66766777777888888888777 66777777777888888888777 66777777777888888877776 677
Q ss_pred cccccccccceeccccccccCCCcchhhhhhh-hhhhhcccCcCCCCCCCCc
Q 001275 592 SSLRSWKSLSILKLSENHFTGGIPTFISELEK-LLELQLGGNQLGGEIPPSI 642 (1109)
Q Consensus 592 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~l~~N~l~g~ip~~~ 642 (1109)
..|+.+++|+.|+|++|.|++.+|..+..+.. +..|+|++|.++|.+|.++
T Consensus 310 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 310 WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 77777777777777777777777777655433 2346677777777777655
No 356
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.80 E-value=1.2e-21 Score=236.48 Aligned_cols=204 Identities=20% Similarity=0.142 Sum_probs=116.0
Q ss_pred CCCCCCcEeeccCccccCCCCccccccCccceecccccc-------------ccccCCcccccccccceec-cccccccc
Q 001275 116 GNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNL-------------LDGEIPEPLFRILGLQYVF-LNNNSLSG 181 (1109)
Q Consensus 116 ~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-Ls~n~l~~ 181 (1109)
..+++|+.|+|++|+++ .+|..++++++|++|++++|. +.+.+|..+..+.+|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 44566666666666665 456666666666666665553 3445555556666666665 4444332
Q ss_pred ccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccC
Q 001275 182 SIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEK 261 (1109)
Q Consensus 182 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 261 (1109)
.|+.+.+.+|.++...+ ..|+.|+|++|+|++ +|. |+++++|+.|+|++|+|+ .+|..+..
T Consensus 424 ----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 23334444444432211 135556666665554 233 555666666666666665 34455556
Q ss_pred CCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcC-CccccccccccEEEcCCCCCCCCCCCc---ccccccc
Q 001275 262 CKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSI-PSSFGLLARLSSLDLSENQLSGKIPPE---LGKCKYL 337 (1109)
Q Consensus 262 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L 337 (1109)
+++|++|+|++|++++ +| .++.+++|+.|+|++|+|++.. |..++.+++|+.|+|++|.+++.+|.. +..+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 6666666666666664 34 5666666777777777776655 666777777777777777776543321 2235666
Q ss_pred ceeec
Q 001275 338 TVLHL 342 (1109)
Q Consensus 338 ~~L~L 342 (1109)
+.|++
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 66653
No 357
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.3e-19 Score=219.93 Aligned_cols=188 Identities=21% Similarity=0.276 Sum_probs=88.7
Q ss_pred cceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCC
Q 001275 385 LEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQ 464 (1109)
Q Consensus 385 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~ 464 (1109)
+..+.+..+.+.+..+ +..+++|+.|++++|.++.. | .+..+++|+.|+|++|.|++..| +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3444444444443222 34455555555555555432 2 34455555555555555554333 45555555555555
Q ss_pred cccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcch
Q 001275 465 NQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQ 544 (1109)
Q Consensus 465 N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 544 (1109)
|+|.+ +| .+..+++|+.|+|++|++++ ++.+..+++|+.|+|++|+|++. ..+..+++|+.|+|++|+|++..|
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 55543 11 23333333333333333332 23344445555555555555432 344455555555555555554433
Q ss_pred hhhcccccceeecccccccccCCccccCCCCccEEEecCcccc
Q 001275 545 ELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLN 587 (1109)
Q Consensus 545 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 587 (1109)
+..+++|+.|+|++|+|++. ..+..+++|+.|+|++|+++
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 44555555555555555432 23444555555555555554
No 358
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=7.2e-21 Score=229.77 Aligned_cols=195 Identities=18% Similarity=0.214 Sum_probs=140.5
Q ss_pred CCCCCCceEEeecCccCCCCCCcccccccccEEeccCCc-------------ccCCcchhhhcccccceee-cccccccc
Q 001275 499 SKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNK-------------FSGLMPQELGNLVSLVTLN-ISLNHVEG 564 (1109)
Q Consensus 499 ~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~~ 564 (1109)
..++.|+.|+|++|+++ .+|.+++++++|+.|++++|. +.+.+|..++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 55677888888888887 788888888888888887775 5677788888888888888 66665431
Q ss_pred cCCc------cccC--CCCccEEEecCccccCCCCcccccccccceeccccccccCCCcchhhhhhhhhhhhcccCcCCC
Q 001275 565 SLPS------QLSK--CKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIPTFISELEKLLELQLGGNQLGG 636 (1109)
Q Consensus 565 ~~p~------~l~~--l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g 636 (1109)
++. .+.. ...|+.|+|++|+|++ +|. |+.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|+|++
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 110 0000 1247778888888874 665 777778888888888877 777777777888888888887774
Q ss_pred CCCCCchhhhhhhhhhccccccccccc-CcchhhcccCCeEEccCCcccccCCCCCc----cccceEEee
Q 001275 637 EIPPSIGALQDLSYALNLSKNGLTGRI-PSDLEKLSKLEQLDISSNNLTGTLSPLSN----IHSLVEVNV 701 (1109)
Q Consensus 637 ~ip~~~~~l~~l~~~L~L~~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~~~~l~~----~~~l~~l~~ 701 (1109)
+| .++.+++| ..|+|++|+|++.+ |..++++++|+.|||++|+|++.+|.... +++|+.||+
T Consensus 501 -lp-~l~~l~~L-~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 -VD-GVANLPRL-QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CG-GGTTCSSC-CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -Cc-ccCCCCCC-cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 66 67777777 36777777777665 77777777777788877777776665322 566666653
No 359
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=3.6e-19 Score=197.28 Aligned_cols=171 Identities=23% Similarity=0.325 Sum_probs=76.9
Q ss_pred hccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccch
Q 001275 404 TELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWR 483 (1109)
Q Consensus 404 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 483 (1109)
..+++|+.|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|++++ +| .+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 3455555555555555532 2 24455555555555555554332 4555555555555555543 11 1333333333
Q ss_pred hhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeeccccccc
Q 001275 484 VILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVE 563 (1109)
Q Consensus 484 l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 563 (1109)
|++++|++++. +.+..+++|++|++++|++++. ..++.+++|+.|++++|++++..| +..+++|+.|++++|+|+
T Consensus 117 L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 117 LSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 33333333321 2334444444444444444432 334444444444444444443322 444444444444444444
Q ss_pred ccCCccccCCCCccEEEecCcccc
Q 001275 564 GSLPSQLSKCKNLEVFDVSFNLLN 587 (1109)
Q Consensus 564 ~~~p~~l~~l~~L~~L~ls~N~l~ 587 (1109)
+ +| .+..+++|+.|++++|+++
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred C-Ch-hhccCCCCCEEECcCCccc
Confidence 2 22 2444444444444444444
No 360
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=1.5e-18 Score=184.99 Aligned_cols=158 Identities=22% Similarity=0.259 Sum_probs=110.6
Q ss_pred CCCceeeeEEecCCCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCC
Q 001275 56 STPCQWVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDI 135 (1109)
Q Consensus 56 ~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 135 (1109)
.+.|.|.+|.|+... -+.+|..+. ++|++|+|++|++++..|..|+.+++|++|+|++|+++...
T Consensus 16 ~~~Cs~~~v~c~~~~-------------l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~ 80 (229)
T 3e6j_A 16 QCSCSGTTVDCRSKR-------------HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP 80 (229)
T ss_dssp TCEEETTEEECTTSC-------------CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCEEeCCEeEccCCC-------------cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC
Confidence 357999999997532 123454443 77888888888888877888888888888888888887655
Q ss_pred CccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeecccccCCCCccccccccc
Q 001275 136 PDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCY 215 (1109)
Q Consensus 136 p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 215 (1109)
+..|..+++|++|+|++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..|..++
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence 566788888888888888887554555566667777777777666 5566666666666666666666655555566666
Q ss_pred CccEEEeccccccC
Q 001275 216 RLQELYLNENKLMG 229 (1109)
Q Consensus 216 ~L~~L~L~~N~l~~ 229 (1109)
+|+.|+|++|.+..
T Consensus 160 ~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 160 SLTHAYLFGNPWDC 173 (229)
T ss_dssp TCCEEECTTSCBCT
T ss_pred CCCEEEeeCCCccC
Confidence 66666666666553
No 361
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=6.5e-19 Score=213.90 Aligned_cols=170 Identities=28% Similarity=0.373 Sum_probs=87.3
Q ss_pred CcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhc
Q 001275 190 LKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLD 269 (1109)
Q Consensus 190 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 269 (1109)
+++|+.|++++|.+... | .++.+++|+.|+|++|++++..+ +..+++|+.|+|++|++++.. .+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEE
Confidence 33444444444444321 1 34444445555555554444332 444445555555555444321 344455555555
Q ss_pred cccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCC
Q 001275 270 LSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEG 349 (1109)
Q Consensus 270 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 349 (1109)
|++|++++. +.+..+++|+.|+|++|++++. ..++.+++|+.|+|++|++++..| +..+++|+.|+|++|+|++
T Consensus 116 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 555555532 2355555666666666665543 445556666666666666654433 5566666666666666654
Q ss_pred CCCccccCCCCccEEEccCccccc
Q 001275 350 EIPDELGQLSNLQDLELFDNRLTG 373 (1109)
Q Consensus 350 ~~p~~l~~l~~L~~L~L~~N~l~~ 373 (1109)
. ..+..+++|+.|+|++|++++
T Consensus 190 l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 190 L--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp C--GGGTTCTTCSEEECCSEEEEC
T ss_pred C--hHHccCCCCCEEEccCCcCcC
Confidence 2 245566666666666666654
No 362
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=5.5e-19 Score=195.83 Aligned_cols=170 Identities=28% Similarity=0.384 Sum_probs=80.2
Q ss_pred CCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchh
Q 001275 189 DLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFL 268 (1109)
Q Consensus 189 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 268 (1109)
.+++|+.|++++|.++.. + .++.+++|++|+|++|++++..+ +.++++|++|++++|++++.. .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCEE
Confidence 344445555555544422 2 24455555555555555554333 455555555555555554321 14444444444
Q ss_pred ccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccC
Q 001275 269 DLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLE 348 (1109)
Q Consensus 269 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 348 (1109)
+|++|++++. +.+..+++|+.|++++|++++. ..++.+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 4444444432 2344445555555555555432 344445555555555555543322 444555555555555554
Q ss_pred CCCCccccCCCCccEEEccCcccc
Q 001275 349 GEIPDELGQLSNLQDLELFDNRLT 372 (1109)
Q Consensus 349 ~~~p~~l~~l~~L~~L~L~~N~l~ 372 (1109)
+ ++ .+..+++|+.|++++|+++
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred C-Ch-hhccCCCCCEEECcCCccc
Confidence 3 22 2444555555555555444
No 363
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=3.3e-18 Score=181.19 Aligned_cols=158 Identities=23% Similarity=0.371 Sum_probs=109.8
Q ss_pred CCCceeeeEEecCCCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCC
Q 001275 56 STPCQWVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDI 135 (1109)
Q Consensus 56 ~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 135 (1109)
.|.|.|..|.|... +++ .+|..+. +.|++|+|++|++++..+..|..+++|++|+|++|++++..
T Consensus 8 ~C~C~~~~v~c~~~------------~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~ 72 (220)
T 2v9t_B 8 ACTCSNNIVDCRGK------------GLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72 (220)
T ss_dssp TSEEETTEEECTTS------------CCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC
T ss_pred CCEECCCEEEcCCC------------CcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC
Confidence 34467777777542 222 3454443 57888888888888777778888888888888888888777
Q ss_pred CccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeecccccCCCCccccccccc
Q 001275 136 PDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCY 215 (1109)
Q Consensus 136 p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 215 (1109)
|..|.++++|++|+|++|.++...+..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..++
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence 88888888888888888888743333455666777777777777666666666666666666666666665555566666
Q ss_pred CccEEEecccccc
Q 001275 216 RLQELYLNENKLM 228 (1109)
Q Consensus 216 ~L~~L~L~~N~l~ 228 (1109)
+|++|+|++|.+.
T Consensus 153 ~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 153 AIQTMHLAQNPFI 165 (220)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEeCCCCcC
Confidence 6666666666654
No 364
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=182.71 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=84.0
Q ss_pred CCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCcc
Q 001275 498 FSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLE 577 (1109)
Q Consensus 498 ~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 577 (1109)
|..+++|++|+|++|+|++..+..|.++++|++|+|++|++++..|..|+.+++|++|+|++|+|++..|..|..+++|+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 55566677777777777766666777777777777777777766666677777777777777777766677777777777
Q ss_pred EEEecCccccCCCCcccccccccceeccccccccCCC
Q 001275 578 VFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGI 614 (1109)
Q Consensus 578 ~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 614 (1109)
.|+|++|+|++..|..|..+++|+.|+|++|.+++..
T Consensus 133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp EEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred EEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 7777777777666777777777777777777776543
No 365
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=4.5e-18 Score=180.06 Aligned_cols=150 Identities=18% Similarity=0.188 Sum_probs=90.3
Q ss_pred EecccCCccccCCcccCCCCccEeecCCCcccccCC-CCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccc
Q 001275 77 NLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIP-PKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLL 155 (1109)
Q Consensus 77 ~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l 155 (1109)
+++++.++. +|+.+. +.+++|+|++|++++..| ..|+.+++|++|+|++|++++..+..|.++++|++|+|++|.+
T Consensus 17 ~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 17 DCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp ECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 333444432 454442 345677777777776544 3466777777777777777766666677777777777777776
Q ss_pred cccCCcccccccccceecccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccC
Q 001275 156 DGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMG 229 (1109)
Q Consensus 156 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 229 (1109)
++..|..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|.+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 65555555556666666666666665555555555555555555555555555555555555555555555543
No 366
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=2e-18 Score=197.84 Aligned_cols=175 Identities=25% Similarity=0.208 Sum_probs=136.9
Q ss_pred EEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCC-CCCCCcEeeccCccccCCCCccccccCccceecccccc
Q 001275 76 FNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLG-NCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNL 154 (1109)
Q Consensus 76 l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~ 154 (1109)
++++++++.. +|..+. +.+++|+|++|++++..+..+. .+++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus 23 l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 23 LSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 4455555543 555443 4588999999999987777777 89999999999999998777889999999999999999
Q ss_pred ccccCCcccccccccceecccccccccccccccCCCcccceeecccccCCCCccccc---ccccCccEEEeccccccCcC
Q 001275 155 LDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESI---GNCYRLQELYLNENKLMGFL 231 (1109)
Q Consensus 155 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~ 231 (1109)
|++..+..+..+.+|++|+|++|+|++..|..|.++++|++|+|++|++++..+..| ..+++|+.|+|++|+|++..
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 886666678888888888888888887778888888888888888888886544445 56888888888888888777
Q ss_pred chhcccccc--cccccccCcccCC
Q 001275 232 PESLSNLEN--LVYLDVGDNNLEG 253 (1109)
Q Consensus 232 ~~~l~~l~~--L~~L~L~~N~l~~ 253 (1109)
+..|..++. |+.|+|++|.+..
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCEEC
T ss_pred HHHhhhccHhhcceEEecCCCccC
Confidence 777777776 3777777777763
No 367
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=2.4e-18 Score=187.51 Aligned_cols=171 Identities=19% Similarity=0.237 Sum_probs=114.3
Q ss_pred hhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEE
Q 001275 381 RIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVL 460 (1109)
Q Consensus 381 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L 460 (1109)
.+..+..+++++|.+++.. .+..+++|+.|++++|+++. +| .+..+++|++|++++|.+++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4566677777777776432 46677777777777777763 33 45666666666666666664333 5555566666
Q ss_pred ECCCcccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccC
Q 001275 461 NMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSG 540 (1109)
Q Consensus 461 ~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~ 540 (1109)
++++|++++ +|.+.. ++|++|++++|+|++ ++ .++.+++|+.|+|++|++++
T Consensus 91 ~L~~N~l~~-------------------------l~~~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 91 SVNRNRLKN-------------------------LNGIPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp ECCSSCCSC-------------------------CTTCCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB
T ss_pred ECCCCccCC-------------------------cCcccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC
Confidence 666665542 122222 667777787777775 33 57777888888888888875
Q ss_pred CcchhhhcccccceeecccccccccCCccccCCCCccEEEecCccccCC
Q 001275 541 LMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGS 589 (1109)
Q Consensus 541 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 589 (1109)
. | .++.+++|++|+|++|++++. ..+..+++|+.|++++|.+++.
T Consensus 143 ~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 143 I-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred C-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 4 3 577777888888888888755 5677778888888888887754
No 368
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=5.2e-18 Score=179.61 Aligned_cols=153 Identities=18% Similarity=0.259 Sum_probs=126.4
Q ss_pred cEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceeccccc
Q 001275 98 QTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNN 177 (1109)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 177 (1109)
+.++++++.++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|++++..|..+..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 35677888887 5676664 78999999999999877778999999999999999998777888888888888888888
Q ss_pred ccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCC
Q 001275 178 SLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEG 253 (1109)
Q Consensus 178 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 253 (1109)
+++...+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8886666667888888888888888888878888888888888888888887777778888888888888887753
No 369
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=4.6e-18 Score=194.80 Aligned_cols=177 Identities=27% Similarity=0.294 Sum_probs=156.9
Q ss_pred cEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCcccc-ccCccceeccccccccccCCcccccccccceecccc
Q 001275 98 QTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFE-NLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNN 176 (1109)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 176 (1109)
+.+++++++++ .+|..+. +.+++|+|++|+|++..+..+. ++++|++|+|++|+|++..|..+..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 47899999998 5777664 5689999999999988788887 999999999999999977778899999999999999
Q ss_pred cccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhc---ccccccccccccCcccCC
Q 001275 177 NSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESL---SNLENLVYLDVGDNNLEG 253 (1109)
Q Consensus 177 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l---~~l~~L~~L~L~~N~l~~ 253 (1109)
|++++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99998878889999999999999999998889999999999999999999998777666 679999999999999998
Q ss_pred cccccccCCCC--cchhccccccccC
Q 001275 254 RINFGSEKCKN--LTFLDLSYNRFSG 277 (1109)
Q Consensus 254 ~~~~~~~~l~~--L~~L~Ls~N~l~~ 277 (1109)
..+..+..++. ++.|+|++|.+.-
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 87777888887 4889999999873
No 370
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=2.4e-17 Score=175.72 Aligned_cols=153 Identities=23% Similarity=0.266 Sum_probs=128.4
Q ss_pred cEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceeccccc
Q 001275 98 QTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNN 177 (1109)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 177 (1109)
+.++.++++++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+++...+..+..+++|++|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 34677778876 6776554 89999999999999888999999999999999999997554556788889999999999
Q ss_pred ccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCc
Q 001275 178 SLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGR 254 (1109)
Q Consensus 178 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 254 (1109)
++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|+|++..+..|..+++|+.|++++|.+...
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 998777777888889999999999888 7788888888888888888888887777788888888888888887753
No 371
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=3.5e-18 Score=186.24 Aligned_cols=170 Identities=23% Similarity=0.291 Sum_probs=89.0
Q ss_pred CCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceee
Q 001275 118 CSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALW 197 (1109)
Q Consensus 118 l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 197 (1109)
+.+++.+++++|.+++ ++ .+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..+ ++.+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 4444444555554442 22 3444555555555555544 233 34444555555555555553322 55555555555
Q ss_pred cccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccC
Q 001275 198 LFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSG 277 (1109)
Q Consensus 198 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 277 (1109)
|++|++++. |.. .. ++|++|+|++|++++. +.+.++++|+.|++++|++++.. .+..+++|++|+|++|++++
T Consensus 92 L~~N~l~~l-~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNL-NGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCC-TTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCc-Ccc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc
Confidence 555555532 221 11 5666666666666543 24556666666666666665432 35555666666666666654
Q ss_pred CCCcccccccCCcEEEeecCCCCCc
Q 001275 278 GISPNLGNCSSLTHLDIVGSKLTGS 302 (1109)
Q Consensus 278 ~~~~~~~~l~~L~~L~L~~n~l~~~ 302 (1109)
. ..+..+++|+.|++++|.++..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 4 4555666666666666666543
No 372
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=7.5e-18 Score=175.26 Aligned_cols=153 Identities=16% Similarity=0.219 Sum_probs=90.5
Q ss_pred cCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccce
Q 001275 92 GHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQY 171 (1109)
Q Consensus 92 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 171 (1109)
+++++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|+|++|.+++..|..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44556666666666666 444 4666666666666666554 2335666666666666666666555666666666666
Q ss_pred ecccccccccccccccCCCcccceeeccccc-CCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcc
Q 001275 172 VFLNNNSLSGSIPRNVGDLKEVEALWLFSNR-LSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNN 250 (1109)
Q Consensus 172 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 250 (1109)
|++++|++++..|..++.+++|++|++++|+ ++ .+| .++.+++|++|++++|++++.. .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcc
Confidence 6666666666556666666666666666665 33 333 4556666666666666665422 45555555555555555
Q ss_pred cC
Q 001275 251 LE 252 (1109)
Q Consensus 251 l~ 252 (1109)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 44
No 373
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=2e-17 Score=171.15 Aligned_cols=132 Identities=16% Similarity=0.229 Sum_probs=83.6
Q ss_pred chhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCC-cccccccccEEeccCCcccCCcchhhhcccccceeecccc
Q 001275 482 WRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPS-SIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLN 560 (1109)
Q Consensus 482 ~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 560 (1109)
+.+++++|+++..+..+.. .|++|++++|+|++..+. .++.+++|++|+|++|+|++..|..|+.+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4566666666544333332 666666666666654443 3666666666666666666666666666666666666666
Q ss_pred cccccCCccccCCCCccEEEecCccccCCCCcccccccccceeccccccccCCCc
Q 001275 561 HVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIP 615 (1109)
Q Consensus 561 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 615 (1109)
+|++..|..|..+++|++|+|++|+|++..|..|..+++|++|+|++|++++..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 6666666666666666666666666666666666666666666666666665443
No 374
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=6.7e-17 Score=168.00 Aligned_cols=154 Identities=12% Similarity=0.164 Sum_probs=109.7
Q ss_pred ccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccE
Q 001275 284 GNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQD 363 (1109)
Q Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 363 (1109)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56677778888887777 444 5777778888888888665 3346777888888888888887767777888888888
Q ss_pred EEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcc
Q 001275 364 LELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSF 443 (1109)
Q Consensus 364 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l 443 (1109)
|++++|++++..|..+..+++|++|++++|.+.+.+| .+..+++|+.|++++|++++. + .+..+++|++|++++|+|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 8888888887677777777788888888877333444 577777777777777777652 2 555666666666666665
Q ss_pred c
Q 001275 444 T 444 (1109)
Q Consensus 444 ~ 444 (1109)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 375
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=8.4e-17 Score=166.41 Aligned_cols=132 Identities=19% Similarity=0.315 Sum_probs=89.3
Q ss_pred ceEEeecCccCCCCCCcccccccccEEeccCCcccCCcch-hhhcccccceeecccccccccCCccccCCCCccEEEecC
Q 001275 505 SHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQ-ELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSF 583 (1109)
Q Consensus 505 ~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 583 (1109)
+.+++++|+++ .+|..+.. +|++|++++|+|++..+. .++.+++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56677777775 55655543 667777777777655443 366677777777777777766666777777777777777
Q ss_pred ccccCCCCcccccccccceeccccccccCCCcchhhhhhhhhhhhcccCcCCCCCC
Q 001275 584 NLLNGSIPSSLRSWKSLSILKLSENHFTGGIPTFISELEKLLELQLGGNQLGGEIP 639 (1109)
Q Consensus 584 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 639 (1109)
|+|++..|..|..+++|++|+|++|++++..|..+..+++|+.|+|++|++++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 77776666667777777777777777776666667777777777777777765543
No 376
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=7.4e-18 Score=190.54 Aligned_cols=219 Identities=16% Similarity=0.146 Sum_probs=95.3
Q ss_pred CcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcc----cCCcccccccCCCCc
Q 001275 190 LKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNN----LEGRINFGSEKCKNL 265 (1109)
Q Consensus 190 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~----l~~~~~~~~~~l~~L 265 (1109)
+++|+.|+|.+ .++.+.+.+|.++++|+.|++++|.++.+.+.+|.+..++..+.+..+. ........|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 55555555555 4444444455555555555555555555555555555444444443321 111122233333333
Q ss_pred c-hhcccccc-ccCCCCcccccccCCcEEEeecCCCCCcCCccc-cccccccEEEcCCCCCCCCCCCccccccccceeec
Q 001275 266 T-FLDLSYNR-FSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSF-GLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHL 342 (1109)
Q Consensus 266 ~-~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 342 (1109)
+ .+.+.... +.......-....+++.+.+.++-.. .....+ ..+++|+.|+|++|+++...+..|.++++|+.+++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 3 22222110 00000000012334444444443211 111111 12455566666655555444445555555555555
Q ss_pred cCcccCCCCCccccCCCCcc-EEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeE
Q 001275 343 YANQLEGEIPDELGQLSNLQ-DLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNI 412 (1109)
Q Consensus 343 ~~N~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 412 (1109)
.+| ++...+.+|.++++|+ .+++.+ .++...+..|.++++|+.+++++|+++...+..|.++++|+.+
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 555 4444444555555555 555555 4443334444444444444444444444444444444444444
No 377
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.66 E-value=7.3e-17 Score=175.23 Aligned_cols=138 Identities=16% Similarity=0.165 Sum_probs=106.0
Q ss_pred CCCCceeecccCeEEEEEEe-CCCcE--EEEEEeeecccc-----------------------cChHHHHHHHHHHhcCC
Q 001275 821 LNAKHVIGRGAHGIVYKASL-GPNAV--FAVKKLAFRGHK-----------------------RGSLSMKREIQTIGKIR 874 (1109)
Q Consensus 821 ~~~~~~lG~G~~g~Vy~~~~-~~~~~--vavK~~~~~~~~-----------------------~~~~~~~~E~~~l~~l~ 874 (1109)
|.+.+.||+|+||.||+|.. .+|+. ||||++...... .....+.+|++++.+++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999987 67888 999987432111 01136789999999998
Q ss_pred CCce--eeEeeEEecCCceeEEEEeccC-C----CHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEec
Q 001275 875 HRNL--VRLEDFWLRKDCGIIMYRYMEN-G----SLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRD 947 (1109)
Q Consensus 875 h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~D 947 (1109)
|+++ ..++++ +..++||||+.+ | +|.++... .++..+..++.|++.|++|||. +.+|+|||
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~------~~~~~~~~i~~qi~~~l~~lH~--~~givHrD 196 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE------LKELDVEGIFNDVVENVKRLYQ--EAELVHAD 196 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG------GGGSCHHHHHHHHHHHHHHHHH--TSCEECSS
T ss_pred hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc------cChHHHHHHHHHHHHHHHHHHH--HCCEEeCC
Confidence 8764 333332 367899999942 4 77776543 1234567899999999999994 46899999
Q ss_pred cCCCCeeeCCCCcEEEecccCCccc
Q 001275 948 IKPENILLDSEMEPHISDFGIAKLL 972 (1109)
Q Consensus 948 lk~~NIll~~~~~~kl~DfGla~~~ 972 (1109)
|||+|||++. .++|+|||+|...
T Consensus 197 lkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 197 LSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp CSTTSEEESS--SEEECCCTTCEET
T ss_pred CCHHHEEEcC--cEEEEECcccccC
Confidence 9999999998 9999999999865
No 378
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=2.7e-16 Score=177.63 Aligned_cols=280 Identities=14% Similarity=0.059 Sum_probs=121.6
Q ss_pred CcccceeecccccCCCCccccccc-ccCccEEEecccccc--CcCchhcccccccccccccCcccCCcccccccC-----
Q 001275 190 LKEVEALWLFSNRLSGTIPESIGN-CYRLQELYLNENKLM--GFLPESLSNLENLVYLDVGDNNLEGRINFGSEK----- 261 (1109)
Q Consensus 190 l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~--~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~----- 261 (1109)
+.++++|.++++ +.......+.. +++|++|+|++|++. ...+..+ +.+..+.+..|.|. ...|..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccccC---HHHhccccccc
Confidence 556777777654 22111122333 566777777777766 2221111 22333334444222 233444
Q ss_pred ---CCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCC----CCCCCCCccccc
Q 001275 262 ---CKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQ----LSGKIPPELGKC 334 (1109)
Q Consensus 262 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~p~~l~~l 334 (1109)
+++|+.|+|++ .++...+.+|.++++|+.|++++|.++...+.+|....++..+.+..+. ........|.++
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 56666666655 5554444555555666666666555554455555554444444444321 111222233344
Q ss_pred cccc-eeeccCcccCCCCCccc----cCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCC
Q 001275 335 KYLT-VLHLYANQLEGEIPDEL----GQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQL 409 (1109)
Q Consensus 335 ~~L~-~L~L~~N~l~~~~p~~l----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 409 (1109)
..|+ .+.+.... .++..+ ....+++.+.+.++-....+......+++|+.+++++|+++...+..|.++++|
T Consensus 176 ~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 176 EPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred cccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 4444 22222110 111111 012333444443331111111111124455555555555554444445555555
Q ss_pred CeEEccCCcCcccCCccccCCCCCc-eEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccc
Q 001275 410 KNISLYNNQFSGVIPQSLGINSSLM-QLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLW 482 (1109)
Q Consensus 410 ~~L~L~~N~l~~~~p~~~~~~~~L~-~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 482 (1109)
+.|+|.+| ++...+..|..+.+|+ .+++.+ +++...+..|..+++|+.++++.|+++...+.+|.+|++|+
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 55555554 4434444444555555 555544 44433344444444444444444444433333444444333
No 379
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=2.3e-16 Score=159.34 Aligned_cols=137 Identities=22% Similarity=0.195 Sum_probs=95.2
Q ss_pred CCCceEEeecCccC-CCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEE
Q 001275 502 PVLSHLDVSRNNIS-GAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFD 580 (1109)
Q Consensus 502 ~~L~~L~Ls~N~i~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 580 (1109)
++|++|++++|+++ +.+|..+..+++|++|++++|++++. ..++.+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777777777776 56677777777777777777777754 5667777777777777777766666666677777777
Q ss_pred ecCccccCCC-CcccccccccceeccccccccCCCc---chhhhhhhhhhhhcccCcCCCCCCCC
Q 001275 581 VSFNLLNGSI-PSSLRSWKSLSILKLSENHFTGGIP---TFISELEKLLELQLGGNQLGGEIPPS 641 (1109)
Q Consensus 581 ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~l~~N~l~g~ip~~ 641 (1109)
+++|+|++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+. ++|++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 7777777431 1567777777777777777774433 36677777777777777766 55543
No 380
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=7.9e-16 Score=155.46 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=54.1
Q ss_pred CCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccC-CccccCCCCccEEE
Q 001275 502 PVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSL-PSQLSKCKNLEVFD 580 (1109)
Q Consensus 502 ~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~ 580 (1109)
++|++|++++|.|++. ..+..+++|++|+|++|++++.+|..++.+++|++|+|++|++++.. +..+..+++|+.|+
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 3344444444444432 44444445555555555554444444444555555555555555321 14555555555555
Q ss_pred ecCccccCCCC---cccccccccceecccccccc
Q 001275 581 VSFNLLNGSIP---SSLRSWKSLSILKLSENHFT 611 (1109)
Q Consensus 581 ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~ 611 (1109)
+++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555553332 25555566666666666555
No 381
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=4.6e-15 Score=151.19 Aligned_cols=134 Identities=21% Similarity=0.284 Sum_probs=80.0
Q ss_pred CCCceeeeEEecCCCCcEEEEEecccCCccccCCcccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCC
Q 001275 56 STPCQWVGIECDDDAHNVVSFNLSSYGVSGQLGPEIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDI 135 (1109)
Q Consensus 56 ~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 135 (1109)
.+.|.|.+|.|+... +. .+|..+ .++|++|++++|++++..+..++.+++|++|+|++|++++..
T Consensus 4 ~C~C~~~~l~~~~~~------------l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (177)
T 2o6r_A 4 RCSCSGTEIRCNSKG------------LT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68 (177)
T ss_dssp TCEEETTEEECCSSC------------CS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEeCCCEEEecCCC------------Cc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC
Confidence 355889999996532 11 233322 357778888888777666666777777777777777777655
Q ss_pred CccccccCccceeccccccccccCCcccccccccceecccccccccccccccCCCcccceeecccccCC
Q 001275 136 PDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLS 204 (1109)
Q Consensus 136 p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 204 (1109)
+..|.++++|++|+|++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++
T Consensus 69 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 556677777777777777776444444445555555555555554333333344444444444444443
No 382
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=1.4e-15 Score=150.19 Aligned_cols=127 Identities=21% Similarity=0.259 Sum_probs=66.9
Q ss_pred CCccEeecCCCccc-ccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceec
Q 001275 95 SKLQTIDLSSNNFS-GNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVF 173 (1109)
Q Consensus 95 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 173 (1109)
++|++|++++|.++ +.+|..++.+++|++|++++|.+++. ..++++++|++|+|++|.+++.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~-------------- 80 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGL-------------- 80 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCT--------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchH--------------
Confidence 45555555555555 45555555555555555555555533 44555555555555555554333
Q ss_pred ccccccccccccccCCCcccceeecccccCCCC-cccccccccCccEEEeccccccCcCc---hhccccccccccccc
Q 001275 174 LNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGT-IPESIGNCYRLQELYLNENKLMGFLP---ESLSNLENLVYLDVG 247 (1109)
Q Consensus 174 Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~L~ 247 (1109)
|..++.+++|++|++++|++++. .+..++.+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 81 ----------~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 81 ----------EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ----------HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ----------HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 33344444444444444444432 23455555666666666666655444 355666666666554
No 383
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=4.1e-15 Score=153.62 Aligned_cols=126 Identities=23% Similarity=0.280 Sum_probs=61.1
Q ss_pred hhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccc
Q 001275 483 RVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHV 562 (1109)
Q Consensus 483 ~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 562 (1109)
.+++++|+++..+..+. +.|++|++++|+|+ .+|..|.++++|+.|+|++|+|++..|..|.++++|++|+|++|+|
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 34455555553322221 34555555555554 3444555555555555555555544444455555555555555555
Q ss_pred cccCCccccCCCCccEEEecCccccCCCCcccccccccceecccccccc
Q 001275 563 EGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFT 611 (1109)
Q Consensus 563 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 611 (1109)
++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 5444444555555555555555555333334444445555555544444
No 384
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=6.7e-15 Score=145.31 Aligned_cols=127 Identities=23% Similarity=0.282 Sum_probs=74.7
Q ss_pred ccccEEEcCCCCCC-CCCCCccccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceee
Q 001275 311 ARLSSLDLSENQLS-GKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLL 389 (1109)
Q Consensus 311 ~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 389 (1109)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45555555555555 45555555566666666666666543 4555666666666666666655555555566666666
Q ss_pred ccCCccCCC-CchhhhccCCCCeEEccCCcCcccCC---ccccCCCCCceEEec
Q 001275 390 VYNNNLLGK-LPLEMTELKQLKNISLYNNQFSGVIP---QSLGINSSLMQLDFI 439 (1109)
Q Consensus 390 l~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~~~~L~~L~ls 439 (1109)
+++|.+++. .+..+..+++|+.|++++|++++..+ ..++.+++|++||++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666542 23556666666666666666665444 345555566655554
No 385
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=9.6e-15 Score=148.84 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=77.6
Q ss_pred CCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEe
Q 001275 502 PVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDV 581 (1109)
Q Consensus 502 ~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 581 (1109)
++|++|++++|++++..+..++.+++|++|++++|++++..+..++.+++|++|+|++|+|++..+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 45677777777777655566677777777777777777655555677777777777777777655556677777777777
Q ss_pred cCccccCCCCcccccccccceeccccccccCCCc
Q 001275 582 SFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIP 615 (1109)
Q Consensus 582 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 615 (1109)
++|+|++..+..+..+++|+.|+|++|++++..|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7777775444455667777777777777765443
No 386
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=9e-15 Score=151.06 Aligned_cols=128 Identities=25% Similarity=0.366 Sum_probs=105.1
Q ss_pred ceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCc
Q 001275 505 SHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFN 584 (1109)
Q Consensus 505 ~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 584 (1109)
+.+++++|+++ .+|..+. .+|++|+|++|+|+ .+|..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888888887 5676553 57888888888888 56788888888888888888888777778888888888888888
Q ss_pred cccCCCCcccccccccceeccccccccCCCcchhhhhhhhhhhhcccCcCCC
Q 001275 585 LLNGSIPSSLRSWKSLSILKLSENHFTGGIPTFISELEKLLELQLGGNQLGG 636 (1109)
Q Consensus 585 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g 636 (1109)
+|++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8887777788888888888888888886555568888888888888888874
No 387
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=1.6e-16 Score=165.37 Aligned_cols=153 Identities=25% Similarity=0.299 Sum_probs=92.5
Q ss_pred hcccccceeecccccccccCCc------cccCCCCccEEEecCccccCCCCcccccccccceeccccccccCCCcchhhh
Q 001275 547 GNLVSLVTLNISLNHVEGSLPS------QLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIPTFISE 620 (1109)
Q Consensus 547 ~~l~~L~~L~L~~N~l~~~~p~------~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 620 (1109)
.....++.++++.|.++|.+|. .++.+++|++|++++|++++ +| .+..+++|+.|++++|+++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3344455555555555555444 55555666666666666653 44 5555666666666666665 45555556
Q ss_pred hhhhhhhhcccCcCCCCCCCCchhhhhhhhhhcccccccccccC-cchhhcccCCeEEccCCcccccCCC----------
Q 001275 621 LEKLLELQLGGNQLGGEIPPSIGALQDLSYALNLSKNGLTGRIP-SDLEKLSKLEQLDISSNNLTGTLSP---------- 689 (1109)
Q Consensus 621 l~~L~~L~l~~N~l~g~ip~~~~~l~~l~~~L~L~~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~~~~---------- 689 (1109)
+++|+.|+|++|++++ +| .++.+++| ..|+|++|++++..+ ..+.++++|++|++++|++++.+|.
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L-~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNL-RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHS-SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCC-CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 6666666666666653 44 45666666 356666666663211 3677788888888888888777664
Q ss_pred -CCccccceEEeeeccccc
Q 001275 690 -LSNIHSLVEVNVSYNLFT 707 (1109)
Q Consensus 690 -l~~~~~l~~l~~~~n~l~ 707 (1109)
+..+++|+.|| +|.++
T Consensus 169 ~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 169 VVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHCSSCSEEC--CGGGT
T ss_pred HHHhCCCcEEEC--CcccC
Confidence 56677777765 55544
No 388
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=1.1e-16 Score=166.58 Aligned_cols=132 Identities=25% Similarity=0.311 Sum_probs=88.7
Q ss_pred hhhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCCcccccccccceeccccccccCCCcchhhhhhhh
Q 001275 545 ELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFTGGIPTFISELEKL 624 (1109)
Q Consensus 545 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 624 (1109)
.++.+++|++|+|++|++++ +| .+..+++|+.|++++|+|+ .+|..+..+++|+.|+|++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 66666666666666666664 55 6666666666666666666 566666666667777777776664 44 46667777
Q ss_pred hhhhcccCcCCCCCC--CCchhhhhhhhhhcccccccccccCcc----------hhhcccCCeEEccCCcccc
Q 001275 625 LELQLGGNQLGGEIP--PSIGALQDLSYALNLSKNGLTGRIPSD----------LEKLSKLEQLDISSNNLTG 685 (1109)
Q Consensus 625 ~~L~l~~N~l~g~ip--~~~~~l~~l~~~L~L~~N~l~g~ip~~----------l~~l~~L~~L~Ls~N~l~g 685 (1109)
+.|++++|++++ +| ..++.+++| ..|++++|.+++.+|.. +..+++|+.|| +|.++.
T Consensus 118 ~~L~l~~N~i~~-~~~~~~l~~l~~L-~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITN-WGEIDKLAALDKL-EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCC-HHHHHHHTTTTTC-SEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCc-hhHHHHHhcCCCC-CEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 777777777763 33 256666666 36777777777766653 88999999997 777763
No 389
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=5.7e-14 Score=162.02 Aligned_cols=261 Identities=11% Similarity=0.076 Sum_probs=114.5
Q ss_pred CCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecc
Q 001275 95 SKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFL 174 (1109)
Q Consensus 95 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 174 (1109)
..++.+.+.+ .++..-..+|.++ +|+.+++..+ ++..-..+|.+. +|+.+.|.. .++..-+..+..+.+|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4445555542 3443334455553 5666666544 443444455552 455555554 333233344445555555555
Q ss_pred cccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCc
Q 001275 175 NNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGR 254 (1109)
Q Consensus 175 s~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 254 (1109)
++|+++......|. ..+|+.+.|..+ ++.+...+|.++++|+.+++..| ++.+...+|.+ .+|+.+.+ .+.++..
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEE
Confidence 55555533333333 245555555422 43333444555555555555442 33334444444 44444444 2334333
Q ss_pred ccccccCCCCcchhcccccccc-----CCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCC
Q 001275 255 INFGSEKCKNLTFLDLSYNRFS-----GGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPP 329 (1109)
Q Consensus 255 ~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 329 (1109)
....|..+++|+.+++..|.+. .....+|.++++|+.+++. +.++.....+|..+++|+.++|..| ++.....
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 3444444444444444444332 1223344444444444444 2233333344444444444444332 3323333
Q ss_pred ccccccccceeeccCcccCCCCCccccCCC-CccEEEccC
Q 001275 330 ELGKCKYLTVLHLYANQLEGEIPDELGQLS-NLQDLELFD 368 (1109)
Q Consensus 330 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~ 368 (1109)
+|.++ +|+.+++++|.+....+..|..++ +++.|++..
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 44444 444444444444333333333332 334444433
No 390
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=1e-13 Score=159.99 Aligned_cols=247 Identities=14% Similarity=0.125 Sum_probs=208.3
Q ss_pred cccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCccccccccc
Q 001275 90 EIGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGL 169 (1109)
Q Consensus 90 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L 169 (1109)
++.+ .+|+.++|..+ ++..-..+|.++ +|+.+++.. .++..-+.+|.++++|+.++|..|.++ .++...+...+|
T Consensus 131 aF~~-~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L 205 (401)
T 4fdw_A 131 AFRN-SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGI 205 (401)
T ss_dssp TTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCC
T ss_pred hccc-CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeeccc
Confidence 4566 47999999866 776666778885 799999986 677666789999999999999999998 667666668999
Q ss_pred ceecccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCc
Q 001275 170 QYVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDN 249 (1109)
Q Consensus 170 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 249 (1109)
+.+.+.++ ++......|.++++|+.+.+..| ++.+...+|.+ .+|+.+.+ .+.++.+...+|.++++|+.+++.+|
T Consensus 206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp SEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESS
T ss_pred CEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCc
Confidence 99999855 77677789999999999999975 66566677877 89999999 56688788899999999999999998
Q ss_pred ccC-----CcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCC
Q 001275 250 NLE-----GRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLS 324 (1109)
Q Consensus 250 ~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 324 (1109)
.+. ......|..|++|+.++|. +.++.....+|.++++|+.+.+..| ++.....+|..+ +|+.+++++|.+.
T Consensus 282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 876 4667889999999999999 4577677789999999999999655 776778899999 9999999999998
Q ss_pred CCCCCcccccc-ccceeeccCcccC
Q 001275 325 GKIPPELGKCK-YLTVLHLYANQLE 348 (1109)
Q Consensus 325 ~~~p~~l~~l~-~L~~L~L~~N~l~ 348 (1109)
...+..|.+++ .++.|++..+.+.
T Consensus 359 ~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 359 QVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp BCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ccccccccCCCCCccEEEeCHHHHH
Confidence 77777888884 7899999887654
No 391
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.52 E-value=3.3e-15 Score=167.83 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=101.3
Q ss_pred hCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeeccc-------------ccChH--------HHHHHHHHHhcCCCCc
Q 001275 819 ENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGH-------------KRGSL--------SMKREIQTIGKIRHRN 877 (1109)
Q Consensus 819 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~-------------~~~~~--------~~~~E~~~l~~l~h~n 877 (1109)
.-|.+.+.||+|+||.||+|...+|+.||||+++.... ..... ...+|+..+.++.+.+
T Consensus 95 ~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g 174 (397)
T 4gyi_A 95 DVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG 174 (397)
T ss_dssp SCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34888999999999999999999999999998743210 00011 1245677777775444
Q ss_pred ee--eEeeEEecCCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeee
Q 001275 878 LV--RLEDFWLRKDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILL 955 (1109)
Q Consensus 878 iv--~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll 955 (1109)
+. ..+++ ...++||||++|++|.++... +....++.|++.++.||| ..+||||||||.|||+
T Consensus 175 v~vp~p~~~----~~~~LVME~i~G~~L~~l~~~---------~~~~~l~~qll~~l~~lH---~~gIVHrDLKp~NILl 238 (397)
T 4gyi_A 175 FPVPEPIAQ----SRHTIVMSLVDALPMRQVSSV---------PDPASLYADLIALILRLA---KHGLIHGDFNEFNILI 238 (397)
T ss_dssp CSCCCEEEE----ETTEEEEECCSCEEGGGCCCC---------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEE
T ss_pred CCCCeeeec----cCceEEEEecCCccHhhhccc---------HHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEE
Confidence 32 22222 234799999999888654321 123568899999999999 8899999999999999
Q ss_pred CCCC----------cEEEecccCCcccC
Q 001275 956 DSEM----------EPHISDFGIAKLLD 973 (1109)
Q Consensus 956 ~~~~----------~~kl~DfGla~~~~ 973 (1109)
++++ .+.|+||+-+....
T Consensus 239 ~~dgd~~d~~~~~~~~~iID~~Q~V~~~ 266 (397)
T 4gyi_A 239 REEKDAEDPSSITLTPIIIXFPQMVSMD 266 (397)
T ss_dssp EEEECSSCTTSEEEEEEECCCTTCEETT
T ss_pred eCCCCcccccccccceEEEEeCCcccCC
Confidence 8776 38999999877543
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=8.3e-15 Score=149.13 Aligned_cols=131 Identities=23% Similarity=0.262 Sum_probs=69.8
Q ss_pred CCCCCCCceEEeecCccCCCCCCcccccc-cccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCc
Q 001275 498 FSKNPVLSHLDVSRNNISGAIPSSIGNSI-NLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNL 576 (1109)
Q Consensus 498 ~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 576 (1109)
+...++|++|++++|+++ .+|. +..+. +|++|++++|++++. ..++.+++|++|+|++|+|++..|..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 344455555555555555 2333 33333 555555655555543 345555555555555555553333333555566
Q ss_pred cEEEecCccccCCCCc--ccccccccceeccccccccCCCcch----hhhhhhhhhhhcccCcC
Q 001275 577 EVFDVSFNLLNGSIPS--SLRSWKSLSILKLSENHFTGGIPTF----ISELEKLLELQLGGNQL 634 (1109)
Q Consensus 577 ~~L~ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~l~~N~l 634 (1109)
++|++++|+|+ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|+.||+++|++
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 66666666654 3443 5555556666666666655 34443 55555666666655554
No 393
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=1.8e-14 Score=146.69 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=82.2
Q ss_pred CCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCc--cccCCCCccEEE
Q 001275 503 VLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPS--QLSKCKNLEVFD 580 (1109)
Q Consensus 503 ~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~ 580 (1109)
+|++|++++|+|++. ..++.+++|++|+|++|+|++..|..++.+++|++|+|++|+|+ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 777888888888754 57777888888888888888654455578888888888888886 5665 778888888888
Q ss_pred ecCccccCCCCcc----cccccccceecccccccc
Q 001275 581 VSFNLLNGSIPSS----LRSWKSLSILKLSENHFT 611 (1109)
Q Consensus 581 ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~ 611 (1109)
+++|.++ .+|.. +..+++|+.|++++|...
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888887 55664 888888999998888776
No 394
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.48 E-value=1.5e-12 Score=150.84 Aligned_cols=314 Identities=13% Similarity=0.049 Sum_probs=181.7
Q ss_pred cCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccceecccccccccccccccCC
Q 001275 110 NIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVGD 189 (1109)
Q Consensus 110 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 189 (1109)
+-..+|.++++|+.+.|..+ ++..-..+|.++++|+.++|..+ ++..-...+..+.+|+.+.+..+ +.......|.+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 33445666666666666532 44334445666666666666543 33223344555556665555433 22233444554
Q ss_pred CcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhc
Q 001275 190 LKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLD 269 (1109)
Q Consensus 190 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 269 (1109)
...++...... .......+|.++++|+.+.+.++. ..+...+|.++++|+.+++..| ++......|..+..|+.+.
T Consensus 139 ~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 139 CDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp CCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 44333332222 222334567788888888887553 4456677888888888888765 5555666777888888887
Q ss_pred cccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCC
Q 001275 270 LSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEG 349 (1109)
Q Consensus 270 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 349 (1109)
+..+... +...+....+|+.+.+..+ ++......|.....|+.+.+..+... .....|..+..++.+....+.+.
T Consensus 215 ~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~- 289 (394)
T 4fs7_A 215 FPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP- 289 (394)
T ss_dssp CCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-
T ss_pred cCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-
Confidence 7766443 2233444567777777543 33344556777777777777776544 45556777777777776665443
Q ss_pred CCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccC
Q 001275 350 EIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGI 429 (1109)
Q Consensus 350 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 429 (1109)
...|..+.+|+.+.+.++ ++......|.++.+|+.+++.++ ++......|.++++|+.+++..| ++..-...|..
T Consensus 290 --~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 290 --EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp --TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred --cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 235666677777777654 44344455666666666666533 44444555666666666666554 44344445555
Q ss_pred CCCCceEEecC
Q 001275 430 NSSLMQLDFIN 440 (1109)
Q Consensus 430 ~~~L~~L~ls~ 440 (1109)
+.+|+.+++..
T Consensus 365 C~~L~~i~lp~ 375 (394)
T 4fs7_A 365 CINLKKVELPK 375 (394)
T ss_dssp CTTCCEEEEEG
T ss_pred CCCCCEEEECC
Confidence 55555555543
No 395
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.45 E-value=8.9e-13 Score=152.72 Aligned_cols=335 Identities=13% Similarity=0.107 Sum_probs=171.3
Q ss_pred cccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCc
Q 001275 226 KLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPS 305 (1109)
Q Consensus 226 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (1109)
.++.+...+|.++++|+.+.+.. .++.....+|..+++|+.+++..+ ++.....+|.++.+|+.+.+..+ ++.....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 35556667788888888888864 366666667777777777777654 44344556667777776655433 3333344
Q ss_pred cccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhccc
Q 001275 306 SFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASL 385 (1109)
Q Consensus 306 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 385 (1109)
+|.....+........ ......+|.++++|+.+.+..+.. ......|..+.+|+.+++..| ++......
T Consensus 135 aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~------- 203 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYC------- 203 (394)
T ss_dssp TTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTT-------
T ss_pred eeecccccccccCccc--cccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchh-------
Confidence 4544433222222211 112233455555555555544322 133344445555555555443 22222333
Q ss_pred ceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCc
Q 001275 386 EYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQN 465 (1109)
Q Consensus 386 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N 465 (1109)
|.+...|+.+.+..+... +.+......+|+.+.+..+ ++......+.....|+.+.+..+
T Consensus 204 -----------------F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 204 -----------------FAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp -----------------TTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred -----------------hccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence 444444444444333221 1222223344455444322 22223333444455555555544
Q ss_pred ccccCCCcccCCCCccchhhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchh
Q 001275 466 QFHGPIPSLLGSCPTLWRVILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQE 545 (1109)
Q Consensus 466 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 545 (1109)
... .....+..+..+..+....+.+.. ..|..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++......
T Consensus 264 ~~~-i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 338 (394)
T 4fs7_A 264 KLR-IGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS 338 (394)
T ss_dssp TCE-ECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred cce-eeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh
Confidence 322 333445555555554444332211 12566667777777544 54444556777777777777643 55344556
Q ss_pred hhcccccceeecccccccccCCccccCCCCccEEEecCccccCCCCcccccccccce
Q 001275 546 LGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSI 602 (1109)
Q Consensus 546 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 602 (1109)
|.++.+|+.+++..| ++..-..+|.+|.+|+.+++..+ ++ .+..+|.++++|+.
T Consensus 339 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 339 FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 666777777776655 55344556666677777766543 22 22345555555543
No 396
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=5.1e-13 Score=135.29 Aligned_cols=104 Identities=19% Similarity=0.288 Sum_probs=78.2
Q ss_pred ceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecCc
Q 001275 505 SHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSFN 584 (1109)
Q Consensus 505 ~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 584 (1109)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|+++++|++|+|++|+|++..+..|..+++|++|||++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57788888876 5666654 67888888888888777777888888888888888887655556677888888888888
Q ss_pred cccCCCCcccccccccceecccccccc
Q 001275 585 LLNGSIPSSLRSWKSLSILKLSENHFT 611 (1109)
Q Consensus 585 ~l~~~~p~~~~~l~~L~~L~L~~N~l~ 611 (1109)
+|++..+..|..+++|+.|+|++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 887554455777777777777777777
No 397
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=6e-13 Score=134.32 Aligned_cols=107 Identities=19% Similarity=0.257 Sum_probs=79.4
Q ss_pred CceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecC
Q 001275 504 LSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSF 583 (1109)
Q Consensus 504 L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 583 (1109)
.+.|++++|+++ .+|..+. ++|++|+|++|+|++..|..|+.+++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 457777777777 4666553 6777888888888877777777787888888888887766666677778888888888
Q ss_pred ccccCCCCcccccccccceeccccccccCC
Q 001275 584 NLLNGSIPSSLRSWKSLSILKLSENHFTGG 613 (1109)
Q Consensus 584 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 613 (1109)
|+|++..|..|..+++|+.|+|++|+++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888765556677777777777777777744
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=1.5e-12 Score=131.28 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=85.0
Q ss_pred hhccCcccCCCCCCCCCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeeccccccc
Q 001275 484 VILKQNQLTGALPEFSKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVE 563 (1109)
Q Consensus 484 l~l~~N~l~~~~~~~~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 563 (1109)
+++++|+++..+..+ .+.|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|+|+
T Consensus 14 l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 14 VDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp EECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC
Confidence 344444444333223 267889999999999888899999999999999999999877777899999999999999999
Q ss_pred ccCCccccCCCCccEEEecCccccCC
Q 001275 564 GSLPSQLSKCKNLEVFDVSFNLLNGS 589 (1109)
Q Consensus 564 ~~~p~~l~~l~~L~~L~ls~N~l~~~ 589 (1109)
+..+..|..+++|++|+|++|.++..
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 92 SIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 77777899999999999999999843
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=1.4e-12 Score=131.98 Aligned_cols=92 Identities=20% Similarity=0.249 Sum_probs=78.6
Q ss_pred CCCceEEeecCccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEe
Q 001275 502 PVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDV 581 (1109)
Q Consensus 502 ~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 581 (1109)
+.|++|+|++|+|++..|..|+++++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 67889999999999888889999999999999999999776666789999999999999999666666999999999999
Q ss_pred cCccccCCCCccc
Q 001275 582 SFNLLNGSIPSSL 594 (1109)
Q Consensus 582 s~N~l~~~~p~~~ 594 (1109)
++|.+. ..+..+
T Consensus 113 ~~N~~~-c~~~~~ 124 (174)
T 2r9u_A 113 YNNPWD-CECRDI 124 (174)
T ss_dssp CSSCBC-TTBGGG
T ss_pred CCCCcc-cccccH
Confidence 999998 344433
No 400
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.1e-13 Score=158.12 Aligned_cols=134 Identities=22% Similarity=0.161 Sum_probs=57.1
Q ss_pred CCCcEeeccCccccCCCCcccccc-----CccceeccccccccccCCcccc-cccccceeccccccccccccccc-----
Q 001275 119 SALEYLDLSTNGFTGDIPDNFENL-----QNLQYLNLYGNLLDGEIPEPLF-RILGLQYVFLNNNSLSGSIPRNV----- 187 (1109)
Q Consensus 119 ~~L~~L~Ls~n~l~~~~p~~l~~L-----~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l----- 187 (1109)
+.|++|+|++|.++......+... ++|++|+|++|.++......+. .+.+|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345555555555543222222222 4555555555555432222221 23445555555555543333322
Q ss_pred CCCcccceeecccccCCCC----cccccccccCccEEEeccccccCcC----chhcccccccccccccCcccC
Q 001275 188 GDLKEVEALWLFSNRLSGT----IPESIGNCYRLQELYLNENKLMGFL----PESLSNLENLVYLDVGDNNLE 252 (1109)
Q Consensus 188 ~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~ 252 (1109)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.|+... ++.+...++|+.|+|++|.|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 1234455555555554421 2222334445555555555544321 233333444444444444443
No 401
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.8e-13 Score=156.28 Aligned_cols=141 Identities=20% Similarity=0.157 Sum_probs=73.6
Q ss_pred ccccEEEcCCCCCCCCCCCcc-ccccccceeeccCcccCCCCCccc-----cCCCCccEEEccCcccccc----CchHHH
Q 001275 311 ARLSSLDLSENQLSGKIPPEL-GKCKYLTVLHLYANQLEGEIPDEL-----GQLSNLQDLELFDNRLTGE----FPVSIW 380 (1109)
Q Consensus 311 ~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~----~~~~~~ 380 (1109)
++|++|+|++|.++......+ ..+++|+.|+|++|.+++.....+ ...++|++|+|++|.|++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 355555555555542221122 224455566666665554333322 2345666666666666542 222334
Q ss_pred hhcccceeeccCCccCCCC----chhhhccCCCCeEEccCCcCccc----CCccccCCCCCceEEecCCcccccCCCCc
Q 001275 381 RIASLEYLLVYNNNLLGKL----PLEMTELKQLKNISLYNNQFSGV----IPQSLGINSSLMQLDFINNSFTGEIPPNL 451 (1109)
Q Consensus 381 ~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~~~~L~~L~ls~N~l~~~~p~~~ 451 (1109)
.+++|++|+|++|.+++.. +..+...++|+.|+|++|.|++. ++..+..+++|++|||++|.|++.....+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 4566666666666665322 33445556677777777776642 22333345667777777777665444333
No 402
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=1.4e-11 Score=139.98 Aligned_cols=105 Identities=21% Similarity=0.256 Sum_probs=84.3
Q ss_pred eEEeecC-ccCCCCCCcccccccccEEeccC-CcccCCcchhhhcccccceeecccccccccCCccccCCCCccEEEecC
Q 001275 506 HLDVSRN-NISGAIPSSIGNSINLTSIDFSS-NKFSGLMPQELGNLVSLVTLNISLNHVEGSLPSQLSKCKNLEVFDVSF 583 (1109)
Q Consensus 506 ~L~Ls~N-~i~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 583 (1109)
.++++++ +|+ .+|. +..+++|+.|+|++ |+|++..|..|++|++|+.|+|++|+|++..|..|.+|++|+.|||++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 787 4777 88888888888885 888877778888888888888888888888888888888888888888
Q ss_pred ccccCCCCcccccccccceeccccccccCC
Q 001275 584 NLLNGSIPSSLRSWKSLSILKLSENHFTGG 613 (1109)
Q Consensus 584 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 613 (1109)
|+|++..|..|..++ |+.|+|.+|.+...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 888865555565555 88888888888743
No 403
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.18 E-value=5e-10 Score=129.50 Aligned_cols=110 Identities=13% Similarity=0.160 Sum_probs=49.9
Q ss_pred ccccccccccEEEcCCCCCCCCCCCccccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcc
Q 001275 305 SSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIAS 384 (1109)
Q Consensus 305 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 384 (1109)
.+|.....|+.+.+..+..+ .....|.+++.|+.+.+. +.++......|.++.+|+.+++..+ ++.....+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 34445555555555443322 333445555555555553 2233233344555555555555433 33233344444555
Q ss_pred cceeeccCCccCCCCchhhhccCCCCeEEccCCc
Q 001275 385 LEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQ 418 (1109)
Q Consensus 385 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 418 (1109)
|+.+.+..+ ++......|.++++|+.+++.+|.
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 555555332 333334444555555555554443
No 404
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.14 E-value=7.2e-10 Score=128.18 Aligned_cols=328 Identities=12% Similarity=0.138 Sum_probs=172.4
Q ss_pred cccCCCc-ccceeecccccCCCCcccccccccCccEEEecccc---ccCcCchhcccccccccccccCcccCCccccccc
Q 001275 185 RNVGDLK-EVEALWLFSNRLSGTIPESIGNCYRLQELYLNENK---LMGFLPESLSNLENLVYLDVGDNNLEGRINFGSE 260 (1109)
Q Consensus 185 ~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~---l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 260 (1109)
.+|.+.+ .|+.+.+..+ ++.+-..+|.++++|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++......|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 4454442 4666666543 444556677777777777777664 55556677777777777776554 5545556677
Q ss_pred CCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCcccccccccee
Q 001275 261 KCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPELGKCKYLTVL 340 (1109)
Q Consensus 261 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 340 (1109)
.+.+|+.+.+..+. .......|..+.+|+.+.+..+ ++.....+|.. .+|+.+.+..+-.. .....|..+.+++..
T Consensus 135 ~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 135 HCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTI 210 (394)
T ss_dssp TCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEE
T ss_pred hhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhcccccee
Confidence 77777777776443 3244556777777777777654 44344455543 56777777655433 445566677777766
Q ss_pred eccCcccCCCCCcccc-CCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcC
Q 001275 341 HLYANQLEGEIPDELG-QLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQF 419 (1109)
Q Consensus 341 ~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 419 (1109)
....+.... +...+. .......-... +.....+..+.+. +.+.......|.++..|+.+.+.++..
T Consensus 211 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~ 277 (394)
T 4gt6_A 211 TSDSESYPA-IDNVLYEKSANGDYALIR-----------YPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV 277 (394)
T ss_dssp EECCSSSCB-SSSCEEEECTTSCEEEEE-----------CCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC
T ss_pred ccccccccc-ccceeecccccccccccc-----------cccccccceEEcC-CcceEcccceeeecccccEEecccccc
Confidence 665544431 111111 00000000000 0001111112111 112222233455555555555544433
Q ss_pred cccCCccccCCCCCceEEecCCcccccCCCCcccCccceEEECCCcccccCCCcccCCCCccchhhccCcccCCCCCC-C
Q 001275 420 SGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLRVLNMGQNQFHGPIPSLLGSCPTLWRVILKQNQLTGALPE-F 498 (1109)
Q Consensus 420 ~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~ 498 (1109)
+ .....|..+.+|+.+++. +.++......|..+.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++..-.. |
T Consensus 278 ~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF 353 (394)
T 4gt6_A 278 S-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAF 353 (394)
T ss_dssp E-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGG
T ss_pred e-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHh
Confidence 2 333445555566666664 3344344445555566666666543 44444556777777777776543 4422222 7
Q ss_pred CCCCCCceEEeecCccCCCCCCcccccccccEEeccCCcc
Q 001275 499 SKNPVLSHLDVSRNNISGAIPSSIGNSINLTSIDFSSNKF 538 (1109)
Q Consensus 499 ~~~~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~Ls~N~l 538 (1109)
..+.+|+.+++.+|.... ..+....+|+.+.+..|.+
T Consensus 354 ~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 354 SNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred hCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 788888888888776531 3566677788887776654
No 405
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=4.2e-11 Score=136.11 Aligned_cols=103 Identities=15% Similarity=0.118 Sum_probs=84.3
Q ss_pred hhccCc-ccCCCCCCCCCCCCCceEEeec-CccCCCCCCcccccccccEEeccCCcccCCcchhhhcccccceeeccccc
Q 001275 484 VILKQN-QLTGALPEFSKNPVLSHLDVSR-NNISGAIPSSIGNSINLTSIDFSSNKFSGLMPQELGNLVSLVTLNISLNH 561 (1109)
Q Consensus 484 l~l~~N-~l~~~~~~~~~~~~L~~L~Ls~-N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 561 (1109)
++.+++ +|++.++ +..+++|++|+|++ |+|++..|..|+++++|+.|+|++|+|++..|..|++|++|+.|+|++|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455555 6665444 77778889999986 99987777889999999999999999998888889999999999999999
Q ss_pred ccccCCccccCCCCccEEEecCccccC
Q 001275 562 VEGSLPSQLSKCKNLEVFDVSFNLLNG 588 (1109)
Q Consensus 562 l~~~~p~~l~~l~~L~~L~ls~N~l~~ 588 (1109)
|++..+..+..++ |+.|+|++|.|..
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9966666666665 9999999999873
No 406
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.03 E-value=4e-10 Score=122.47 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=111.8
Q ss_pred HHhhCCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCC-CCceeeEeeEEecCCceeEE
Q 001275 816 EATENLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIR-HRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 816 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv 894 (1109)
.....|......+.|+.+.||++... ++.+++|+..... ......+.+|+++++.+. +..+.++++++...+..++|
T Consensus 11 ~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~-~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv 88 (263)
T 3tm0_A 11 KLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRY-KGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL 88 (263)
T ss_dssp HHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGG-TTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred HHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCccc-CCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEE
Confidence 34467877888888999999999765 6889999874321 123346889999999884 67788899999888889999
Q ss_pred EEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcC------------------------------------
Q 001275 895 YRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYD------------------------------------ 938 (1109)
Q Consensus 895 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~------------------------------------ 938 (1109)
|||++|.++.+.+.. ......++.+++++++.||..
T Consensus 89 ~e~i~G~~l~~~~~~--------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (263)
T 3tm0_A 89 MSEADGVLCSEEYED--------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE 160 (263)
T ss_dssp EECCSSEEHHHHCCT--------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGST
T ss_pred EEecCCeehhhccCC--------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccc
Confidence 999999999876321 112347888999999999951
Q ss_pred --------------------CCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 939 --------------------CDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 939 --------------------~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
....++|+|++|.||+++++..+.|+||+.+.
T Consensus 161 ~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 161 DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp TCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred cccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 01458999999999999876566799998764
No 407
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=98.90 E-value=1.7e-09 Score=117.16 Aligned_cols=136 Identities=15% Similarity=0.054 Sum_probs=98.4
Q ss_pred CCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCc--eeeEeeEEecCCceeEEEEe
Q 001275 820 NLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRN--LVRLEDFWLRKDCGIIMYRY 897 (1109)
Q Consensus 820 ~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~ 897 (1109)
.+....+.+.|..+.||++...+|+.+++|..... ....+.+|+++++.+.+.+ +.+++++....+..++||||
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~----~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~ 96 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG----ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGE 96 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC----TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEEC
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc----cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEe
Confidence 34433333456669999998877888999986332 2345788999999885444 55688888877788999999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCC--------------------------------------
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDC-------------------------------------- 939 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-------------------------------------- 939 (1109)
++|.++. ... .+ ...++.++++.++.||...
T Consensus 97 i~G~~l~--~~~------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (264)
T 1nd4_A 97 VPGQDLL--SSH------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGL 165 (264)
T ss_dssp CSSEETT--TSC------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTC
T ss_pred cCCcccC--cCc------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCc
Confidence 9998874 211 11 2356778888888888421
Q ss_pred -----------------CCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 940 -----------------DPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 940 -----------------~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
...++|+|++|.||++++++.+.|+|||.+.
T Consensus 166 ~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~ 213 (264)
T 1nd4_A 166 APAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG 213 (264)
T ss_dssp CHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred cHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence 1129999999999999877667799999875
No 408
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=2.9e-10 Score=128.51 Aligned_cols=161 Identities=15% Similarity=0.158 Sum_probs=75.0
Q ss_pred ccccccCccceeccccccccccCCcccccccccceecccccccccccccccC--CCcccceeeccc--ccCCCC-----c
Q 001275 137 DNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQYVFLNNNSLSGSIPRNVG--DLKEVEALWLFS--NRLSGT-----I 207 (1109)
Q Consensus 137 ~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~--N~l~~~-----~ 207 (1109)
..+..+++|+.|+|++|.-. .++. + .+++|++|+|..|.++......++ .+++|++|+|+. |...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 33455566666666665211 2222 2 255666666666665544333333 566666666642 111111 0
Q ss_pred cccc--ccccCccEEEeccccccCcCchhcccccccccccccCcccCCcccccccCCCCcchhccccccccCC----CCc
Q 001275 208 PESI--GNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNNLEGRINFGSEKCKNLTFLDLSYNRFSGG----ISP 281 (1109)
Q Consensus 208 p~~l--~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~ 281 (1109)
...+ ..+++|++|+|.+|.+++..+..+.. ...+++|++|+|+.|.+++. ++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~---------------------a~~~~~L~~LdLs~n~L~d~G~~~L~~ 301 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE---------------------SDILPQLETMDISAGVLTDEGARLLLD 301 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH---------------------CSSGGGCSEEECCSSCCBHHHHHHHHT
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh---------------------CccCCCCCEEECCCCCCChHHHHHHHh
Confidence 0111 23456666666666555333222221 01234445555555544432 122
Q ss_pred ccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCC
Q 001275 282 NLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQ 322 (1109)
Q Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 322 (1109)
.+..+++|+.|++++|.++...-..+...- ...+++++++
T Consensus 302 ~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 302 HVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp THHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred hcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 233456666666666666543333333200 3556777766
No 409
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.81 E-value=2.5e-11 Score=129.98 Aligned_cols=152 Identities=20% Similarity=0.155 Sum_probs=70.4
Q ss_pred ChhhHHHHHHHHHhccCCCCcccCCCCC---------C----CCCCceeeeEEecCCCCcEEEEEecc---cCCccccCC
Q 001275 26 LNGDGVALLSLMRHWNSVPPLIISSWNS---------S----DSTPCQWVGIECDDDAHNVVSFNLSS---YGVSGQLGP 89 (1109)
Q Consensus 26 ~~~~~~all~~~~~~~~~~~~~l~sW~~---------~----~~~~c~w~gv~C~~~~~~v~~l~l~~---~~l~~~~~~ 89 (1109)
..-|++-|+.+-......| -.-..|.- . ....|+|.|+.|+.+..+|+.+...+ ..+.+.+.+
T Consensus 33 ~ky~k~~ll~~i~~~~~~~-f~p~~~~~~~~~~~ffV~~~~~A~~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~ 111 (267)
T 3rw6_A 33 RKYDKAWLLSMIQSKCSVP-FTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKP 111 (267)
T ss_dssp GGSCHHHHHHHHHHTCSSC-CCCEEEEEETTEEEEEESCHHHHHHHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCH
T ss_pred cccCHHHHHHHHHHhCCCC-cEeEEEEEeCCEEEEEeCChHHHHHHHhcCcEEECCCCCEEEEEEecCCCcccccccCCH
Confidence 4456677777766654333 11223320 0 11247899999998776776665544 334444432
Q ss_pred c-ccCCCCccEeecCCCcccccCC-CCCCCCCCCcE--eeccCcccc---CCCCccccccCccceeccccccccc--cCC
Q 001275 90 E-IGHLSKLQTIDLSSNNFSGNIP-PKLGNCSALEY--LDLSTNGFT---GDIPDNFENLQNLQYLNLYGNLLDG--EIP 160 (1109)
Q Consensus 90 ~-l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~--L~Ls~n~l~---~~~p~~l~~L~~L~~L~L~~n~l~~--~~p 160 (1109)
+ +..++. .|..++|.-++.++ ..+...+.|+. ++++.|... +.++....++++|++|+|++|+|++ .+|
T Consensus 112 ~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~ 189 (267)
T 3rw6_A 112 EQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMS 189 (267)
T ss_dssp HHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGT
T ss_pred HHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccch
Confidence 2 222211 12222222222211 11333444444 455555322 1111112345566666666666654 333
Q ss_pred cccccccccceecccccccc
Q 001275 161 EPLFRILGLQYVFLNNNSLS 180 (1109)
Q Consensus 161 ~~l~~l~~L~~L~Ls~n~l~ 180 (1109)
..+..+++|+.|+|++|+|+
T Consensus 190 ~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 190 SIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp THHHHSTTCCEEECTTSCCC
T ss_pred hHHhhCCCCCEEECCCCccC
Confidence 44444455555555555544
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=1.4e-09 Score=122.94 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=48.5
Q ss_pred CCCCccEEEccCccccccCchHHH---hhcccceeeccCCccCCCC----chhhhccCCCCeEEccCCcCcccCCccccC
Q 001275 357 QLSNLQDLELFDNRLTGEFPVSIW---RIASLEYLLVYNNNLLGKL----PLEMTELKQLKNISLYNNQFSGVIPQSLGI 429 (1109)
Q Consensus 357 ~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 429 (1109)
.+++|++|+|++|.+++..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|+|++|.|+...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 356677777777666654444443 2566777777777766532 223345677777777777766433322221
Q ss_pred -CCCCceEEecCCc
Q 001275 430 -NSSLMQLDFINNS 442 (1109)
Q Consensus 430 -~~~L~~L~ls~N~ 442 (1109)
+ ...+++++|.
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 1 3456777765
No 411
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.80 E-value=6.5e-09 Score=118.50 Aligned_cols=142 Identities=13% Similarity=0.173 Sum_probs=104.7
Q ss_pred CceeecccCeEEEEEEeCCCcEEEEEEee--ecccccChHHHHHHHHHHhcCC--CCceeeEeeEEecC---CceeEEEE
Q 001275 824 KHVIGRGAHGIVYKASLGPNAVFAVKKLA--FRGHKRGSLSMKREIQTIGKIR--HRNLVRLEDFWLRK---DCGIIMYR 896 (1109)
Q Consensus 824 ~~~lG~G~~g~Vy~~~~~~~~~vavK~~~--~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~---~~~~lv~e 896 (1109)
.+.++.|.++.||+.+..+ ..+++|+.. ..........+.+|+.+++.+. +..+.+++.++.+. +..++|||
T Consensus 43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme 121 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME 121 (359)
T ss_dssp EEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence 5678999999999998764 577888764 2222223456889999999996 45678888888766 34799999
Q ss_pred eccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-------------------------------------
Q 001275 897 YMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDC------------------------------------- 939 (1109)
Q Consensus 897 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------------------------------------- 939 (1109)
|++|..+.+. ....++...+..++.+++++|+.||...
T Consensus 122 ~v~G~~l~~~-----~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (359)
T 3dxp_A 122 FVSGRVLWDQ-----SLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPA 196 (359)
T ss_dssp CCCCBCCCCT-----TCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHH
T ss_pred ecCCeecCCC-----ccccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChH
Confidence 9999776431 1123678888899999999999999520
Q ss_pred ------------------CCCeEEeccCCCCeeeCCCCc--EEEecccCCcc
Q 001275 940 ------------------DPPIVHRDIKPENILLDSEME--PHISDFGIAKL 971 (1109)
Q Consensus 940 ------------------~~~ivH~Dlk~~NIll~~~~~--~kl~DfGla~~ 971 (1109)
...++|||+++.||+++.++. +.|+||+.+..
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 197 MDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 256899999999999987753 68999998864
No 412
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.75 E-value=1.6e-07 Score=107.84 Aligned_cols=313 Identities=12% Similarity=0.066 Sum_probs=161.6
Q ss_pred ccCCCCccEeecCCCcccccCCCCCCCCCCCcEeeccCccccCCCCccccccCccceeccccccccccCCcccccccccc
Q 001275 91 IGHLSKLQTIDLSSNNFSGNIPPKLGNCSALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLDGEIPEPLFRILGLQ 170 (1109)
Q Consensus 91 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 170 (1109)
+..-.+|+.+.+.. .++.+-..+|.++.+|+.++|..+ ++..-..+|.+. +|+.+.+..+ ++ .+....+...+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGTDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTCCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccCCcc
Confidence 44456677777764 466555667888888888888654 554445667776 5666666543 33 3333333444677
Q ss_pred eecccccccccccccccCCCcccceeecccccCCCCcccccccccCccEEEeccccccCcCchhcccccccccccccCcc
Q 001275 171 YVFLNNNSLSGSIPRNVGDLKEVEALWLFSNRLSGTIPESIGNCYRLQELYLNENKLMGFLPESLSNLENLVYLDVGDNN 250 (1109)
Q Consensus 171 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 250 (1109)
.+.+..+- +......|.+. +|+.+.+..+ ++......|..+.+++.+.+..+.........+ .. +.
T Consensus 117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~-~~----------~~ 182 (379)
T 4h09_A 117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV-LY----------NK 182 (379)
T ss_dssp EEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE-EE----------ET
T ss_pred cccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccce-ec----------cc
Confidence 77765442 21223333332 4555444332 333444556666666666665443321111000 00 00
Q ss_pred cCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEcCCCCCCCCCCCc
Q 001275 251 LEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDLSENQLSGKIPPE 330 (1109)
Q Consensus 251 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 330 (1109)
.......+.....+..+.+..+. .......+....+|+.+.+..+ ++.....+|.....|+.+.+..+ ++......
T Consensus 183 -~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a 258 (379)
T 4h09_A 183 -NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL 258 (379)
T ss_dssp -TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTT
T ss_pred -ccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccc
Confidence 00011112222333333322221 1122344455556666665433 33344455566666666666554 44344455
Q ss_pred cccccccceeeccCcccCCCCCccccCCCCccEEEccCccccccCchHHHhhcccceeeccCCccCCCCchhhhccCCCC
Q 001275 331 LGKCKYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNRLTGEFPVSIWRIASLEYLLVYNNNLLGKLPLEMTELKQLK 410 (1109)
Q Consensus 331 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 410 (1109)
|.++.+|+.+.+..+ +.......|..+++|+.+.+.++.++......|.++.+|+.+.+..+ ++......|.++++|+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 666666666666543 43334445666667777777666666555556666777777777543 5444455677777777
Q ss_pred eEEccCCcCcccCCccccC
Q 001275 411 NISLYNNQFSGVIPQSLGI 429 (1109)
Q Consensus 411 ~L~L~~N~l~~~~p~~~~~ 429 (1109)
.+.+..+ ++..-...|..
T Consensus 337 ~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 337 TISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp CCCCCTT-CCEECTTTTTT
T ss_pred EEEECCc-cCEEchhHhhC
Confidence 7776544 44333344433
No 413
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.73 E-value=2.5e-07 Score=106.08 Aligned_cols=107 Identities=12% Similarity=0.123 Sum_probs=48.7
Q ss_pred HHhhcccceeeccCCccCCCCchhhhccCCCCeEEccCCcCcccCCccccCCCCCceEEecCCcccccCCCCcccCccce
Q 001275 379 IWRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNNQFSGVIPQSLGINSSLMQLDFINNSFTGEIPPNLCFGKQLR 458 (1109)
Q Consensus 379 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~ 458 (1109)
+..+..|+.+.+..+ ++......|.+..+|+.+.+..+ ++......|..+.+|+.+++.++.++......|..+.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 333444444444332 22223333444444444444332 3323333344445555555555545444444444555555
Q ss_pred EEECCCcccccCCCcccCCCCccchhhccC
Q 001275 459 VLNMGQNQFHGPIPSLLGSCPTLWRVILKQ 488 (1109)
Q Consensus 459 ~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~ 488 (1109)
.+.|..+ ++.....+|.+|.+|+.+.+..
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 5555433 4434445566666666665543
No 414
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.53 E-value=1.7e-08 Score=112.01 Aligned_cols=187 Identities=18% Similarity=0.205 Sum_probs=118.9
Q ss_pred CceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCC-CCc--eeeEeeEEecCC---ceeEEEEe
Q 001275 824 KHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIR-HRN--LVRLEDFWLRKD---CGIIMYRY 897 (1109)
Q Consensus 824 ~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~e~ 897 (1109)
.+.++.|....||+.. ..+++|+... ......+.+|+++++.+. +.. +.+.+.+....+ ..|+||||
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~---~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~ 97 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKH---SRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTK 97 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESS---HHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEEC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCC---cchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcc
Confidence 4568999999999974 5578886521 233457889999998873 332 334444433332 34899999
Q ss_pred ccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcC---------------------------------------
Q 001275 898 MENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYD--------------------------------------- 938 (1109)
Q Consensus 898 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~--------------------------------------- 938 (1109)
++|.++.+.... .++.+++..++.++++.++.||..
T Consensus 98 i~G~~l~~~~~~-----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (304)
T 3sg8_A 98 IKGVPLTPLLLN-----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKK 172 (304)
T ss_dssp CCCEECCHHHHH-----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred cCCeECCccccc-----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHH
Confidence 999887653321 256677778888888888888841
Q ss_pred ----------------CCCCeEEeccCCCCeeeCC--CCcEEEecccCCcccCCCCCCceee------------ecccCc
Q 001275 939 ----------------CDPPIVHRDIKPENILLDS--EMEPHISDFGIAKLLDKSPASTTSI------------SVVGTI 988 (1109)
Q Consensus 939 ----------------~~~~ivH~Dlk~~NIll~~--~~~~kl~DfGla~~~~~~~~~~~~~------------~~~gt~ 988 (1109)
....++|+|++|.||++++ +..+.|+||+.+..-+......... ......
T Consensus 173 l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y 252 (304)
T 3sg8_A 173 VDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHY 252 (304)
T ss_dssp HHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHc
Confidence 1245799999999999988 4567899999887542211000000 000001
Q ss_pred cccc-ccccccCCCCccCcchhhHHHHHHHHhCCCCC
Q 001275 989 GYIA-PENAFTTAKSKESDVYSYGVVLLELITRKKAL 1024 (1109)
Q Consensus 989 ~y~a-PE~~~~~~~~~~sDvwSlGvil~elltg~~p~ 1024 (1109)
++.. |+..... ....+.|++|.++|.+.+|+.++
T Consensus 253 ~~~~~~~~~~r~--~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 253 KHKDIPTVLEKY--RMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp TCSCHHHHHHHH--HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCcHHHHHHH--HHHHHHHHHHHHHHHHHcCCHHH
Confidence 1111 2221111 22368999999999999998654
No 415
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=5.6e-08 Score=103.99 Aligned_cols=67 Identities=28% Similarity=0.348 Sum_probs=40.5
Q ss_pred hcccccceeecccccccc--cCCccccCCCCccEEEecCccccCCCCccccccc--ccceeccccccccCCCc
Q 001275 547 GNLVSLVTLNISLNHVEG--SLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWK--SLSILKLSENHFTGGIP 615 (1109)
Q Consensus 547 ~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p 615 (1109)
.++++|+.|+|++|+|++ .+|..+..+++|+.|||++|+|++. ..+..++ +|+.|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345666666666666665 3445556666777777777776643 3344444 66666666666665554
No 416
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.30 E-value=1.3e-07 Score=96.43 Aligned_cols=15 Identities=7% Similarity=0.217 Sum_probs=7.4
Q ss_pred CCCccEEEccCcccc
Q 001275 358 LSNLQDLELFDNRLT 372 (1109)
Q Consensus 358 l~~L~~L~L~~N~l~ 372 (1109)
.++|++|+|++|+|.
T Consensus 64 ~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 64 NTYVKKFSIVGTRSN 78 (185)
T ss_dssp CCSCCEEECTTSCCC
T ss_pred CCCcCEEECcCCCCC
Confidence 344555555555544
No 417
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=1.2e-07 Score=96.55 Aligned_cols=116 Identities=13% Similarity=0.098 Sum_probs=86.3
Q ss_pred ccccCCCCccEEEccCc-cccccCc----hHHHhhcccceeeccCCccCCCC----chhhhccCCCCeEEccCCcCccc-
Q 001275 353 DELGQLSNLQDLELFDN-RLTGEFP----VSIWRIASLEYLLVYNNNLLGKL----PLEMTELKQLKNISLYNNQFSGV- 422 (1109)
Q Consensus 353 ~~l~~l~~L~~L~L~~N-~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~- 422 (1109)
..+...++|++|+|++| .+..... ..+...++|++|+|++|.+.... ...+...+.|++|+|++|+|+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 44566788999999998 8875433 33445688999999999987543 33455668899999999999864
Q ss_pred ---CCccccCCCCCceEEe--cCCcccccCCC----CcccCccceEEECCCcccc
Q 001275 423 ---IPQSLGINSSLMQLDF--INNSFTGEIPP----NLCFGKQLRVLNMGQNQFH 468 (1109)
Q Consensus 423 ---~p~~~~~~~~L~~L~l--s~N~l~~~~p~----~~~~~~~L~~L~L~~N~l~ 468 (1109)
+...+..+++|++|+| ++|.|+..... .+...+.|+.|+|++|++.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4556677888999999 88998865433 3334478899999988875
No 418
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.26 E-value=2.4e-06 Score=95.34 Aligned_cols=136 Identities=18% Similarity=0.205 Sum_probs=98.0
Q ss_pred CCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCC----CceeeEeeEEecCCceeEEE
Q 001275 820 NLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRH----RNLVRLEDFWLRKDCGIIMY 895 (1109)
Q Consensus 820 ~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~l~~~~~~~~~~~lv~ 895 (1109)
.+...+.++.|....||+. ++.+++|+... ......+.+|.+++..+.+ ..+.+++++ +..++||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~---~~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvm 106 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKR---DSVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIM 106 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESS---HHHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCc---HHHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEE
Confidence 5566778999999999998 66778886521 2223468899998888865 223444444 5678999
Q ss_pred EeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCC------------------------------------
Q 001275 896 RYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDC------------------------------------ 939 (1109)
Q Consensus 896 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------------------------------------ 939 (1109)
||++|.++.+.... .++...+..++.++++.++.||...
T Consensus 107 e~i~G~~l~~~~~~-----~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (320)
T 3r70_A 107 KYIKGERITYEQYH-----KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLL 181 (320)
T ss_dssp ECCCCBCCCHHHHT-----TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eecCCccccccccc-----cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhcccc
Confidence 99999888643211 2456666777777777777777321
Q ss_pred ------------------------CCCeEEeccCCCCeeeCCCCcEEEecccCCcc
Q 001275 940 ------------------------DPPIVHRDIKPENILLDSEMEPHISDFGIAKL 971 (1109)
Q Consensus 940 ------------------------~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~ 971 (1109)
...++|+|++|.||+++.+..+.|+||+.+..
T Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 182 TDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred cccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 12359999999999999866679999998864
No 419
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.10 E-value=1.1e-05 Score=88.13 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=93.0
Q ss_pred CCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCC---ceeeEeeEEecCCceeEEEEecc
Q 001275 823 AKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHR---NLVRLEDFWLRKDCGIIMYRYME 899 (1109)
Q Consensus 823 ~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lv~e~~~ 899 (1109)
..+.++.|.++.||+++..+|+.++||+.... .......+.+|++.++.+++. .+.+++++. ..++||||++
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~-~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~ 93 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDD-APALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVD 93 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTT-CCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCC
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCC-CcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEecc
Confidence 35679999999999999888999999986322 223346789999999999765 577777763 4689999999
Q ss_pred CCCHH--------H---HHhccCCC------------------CCCCHHHHHH---H-----------------HHHHHH
Q 001275 900 NGSLR--------D---VLHSITPP------------------PTLEWNVRYK---I-----------------ALGAAH 930 (1109)
Q Consensus 900 ~gsL~--------~---~l~~~~~~------------------~~l~~~~~~~---i-----------------~~~i~~ 930 (1109)
++++. + .+|..... ..-+|..... + ...+-+
T Consensus 94 g~~~~~~~~~~lg~~LA~LH~~~~~~fG~~~~~~~G~~~q~~~w~~~W~~f~~~~rl~~~l~~a~~~~~~~~~~~~~~~~ 173 (288)
T 3d1u_A 94 ERPPTPEAAERFGHQLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAADRGALTPGDVRLVEK 173 (288)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHHTHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 98742 1 12332211 0123443211 0 011112
Q ss_pred HHHHhh----cCCCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 931 ALAYLH----YDCDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 931 ~L~~LH----~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
.++.+. ......++|+|+.+.||+++. +.+.|+|| .+.
T Consensus 174 l~~~l~~~l~~~~~~~l~HgD~~~~N~l~~~-~~~~~iD~-~~~ 215 (288)
T 3d1u_A 174 VLDALDHLAGDPEPPARIHGDLWNGNVLWQD-DGAVVIDP-AAH 215 (288)
T ss_dssp HHHTHHHHTCSCCCCEEECSCCSGGGEEEET-TEEEECSC-CCE
T ss_pred HHHHHHHHhcCCCCCcceECCCCcCcEEEeC-CCeEEEcC-CcC
Confidence 222222 123567999999999999988 45889999 554
No 420
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=97.96 E-value=2e-05 Score=87.04 Aligned_cols=136 Identities=19% Similarity=0.249 Sum_probs=91.4
Q ss_pred CceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCC---ceeeEeeEEe-cCCceeEEEEecc
Q 001275 824 KHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHR---NLVRLEDFWL-RKDCGIIMYRYME 899 (1109)
Q Consensus 824 ~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~e~~~ 899 (1109)
.+.++.|....||+. +..+++|+- ........+.+|+++++.+.+. .+.+.+.++. ..+..++||||++
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~---~~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~ 96 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFP---KSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQ 96 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEE---SSHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCC
T ss_pred eeecCCCcceeEEEE----CCEEEEEec---CCchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccC
Confidence 456888999999998 566788863 1223345788999999999642 3556666664 3456789999999
Q ss_pred CCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcC-----------------------------------------
Q 001275 900 NGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYD----------------------------------------- 938 (1109)
Q Consensus 900 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~----------------------------------------- 938 (1109)
|.++.+..-. .++......++.++++.++.||..
T Consensus 97 G~~l~~~~~~-----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~ 171 (306)
T 3tdw_A 97 GQILGEDGMA-----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDY 171 (306)
T ss_dssp SEECHHHHHT-----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred CeECchhhhh-----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 9887653211 123344444444444444444421
Q ss_pred ----------------CCCCeEEeccCCCCeeeCC---CCc-EEEecccCCcc
Q 001275 939 ----------------CDPPIVHRDIKPENILLDS---EME-PHISDFGIAKL 971 (1109)
Q Consensus 939 ----------------~~~~ivH~Dlk~~NIll~~---~~~-~kl~DfGla~~ 971 (1109)
....++|+|+++.||+++. ++. +.|+||+.+..
T Consensus 172 l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 172 LTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 2345799999999999987 455 48999997763
No 421
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=97.95 E-value=2.4e-05 Score=84.76 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=95.2
Q ss_pred eeecccCe-EEEEEEeC-CCcEEEEEEeeecccccChHHHHHHHHHHhcCC-CCceeeEeeEEecCCceeEEEEeccCCC
Q 001275 826 VIGRGAHG-IVYKASLG-PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIR-HRNLVRLEDFWLRKDCGIIMYRYMENGS 902 (1109)
Q Consensus 826 ~lG~G~~g-~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~gs 902 (1109)
.+..|..| .||+.... ++..+++|+-.. ....++.+|...++.+. +--+.++++++.+.+..++|||+++|.+
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~----~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~ 106 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG----SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKT 106 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEET----HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCC----CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCcc
Confidence 35556655 69998765 456788887532 23456888999998884 3346678888888889999999999988
Q ss_pred HHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcC--------------------------------------------
Q 001275 903 LRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYD-------------------------------------------- 938 (1109)
Q Consensus 903 L~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~-------------------------------------------- 938 (1109)
+.+...... .....+..++++.++.||..
T Consensus 107 ~~~~~~~~~-------~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (272)
T 4gkh_A 107 AFQVLEEYP-------DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQV 179 (272)
T ss_dssp HHHHHHHCG-------GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHH
T ss_pred ccccccCCH-------HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHH
Confidence 877654311 12334566666667767621
Q ss_pred -----------CCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 939 -----------CDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 939 -----------~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
....++|+|+.+.||+++.++.+-|+||+.+.
T Consensus 180 ~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 180 WKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp HHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred HHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 01237899999999999987777899998765
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=97.75 E-value=5e-05 Score=85.96 Aligned_cols=143 Identities=11% Similarity=0.124 Sum_probs=89.1
Q ss_pred CCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCc--eeeEeeEEecC-CceeEEEEecc
Q 001275 823 AKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRN--LVRLEDFWLRK-DCGIIMYRYME 899 (1109)
Q Consensus 823 ~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~-~~~~lv~e~~~ 899 (1109)
..+.++.|....||+.+.. ++.+++|.... ...+.+|+.++..+.... +.++++++... +..++||||++
T Consensus 45 ~i~~l~gG~~n~~y~v~~~-g~~~vlK~~~~------~~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~ 117 (362)
T 3ovc_A 45 DLMQLSEGEESRAFSFDVG-GRGYVLRVNSC------ADGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQ 117 (362)
T ss_dssp EEEEEEECSSEEEEEEEET-TEEEEEEEESC------CHHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCC
T ss_pred eEEECCCCCcceEEEEEEC-CcEEEEEeCCc------hhhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecC
Confidence 3566899999999999864 77888887622 125888999998886433 45667666654 56799999999
Q ss_pred CCCHHH------------------HHhccCCCC--------------CCCHHHHH---------------------HHHH
Q 001275 900 NGSLRD------------------VLHSITPPP--------------TLEWNVRY---------------------KIAL 926 (1109)
Q Consensus 900 ~gsL~~------------------~l~~~~~~~--------------~l~~~~~~---------------------~i~~ 926 (1109)
|.++.+ .+|...... .-.|...+ ....
T Consensus 118 G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (362)
T 3ovc_A 118 GVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVAQ 197 (362)
T ss_dssp SEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccchH
Confidence 765531 112211100 00111110 1111
Q ss_pred HHHHHHHHhhc-CCCCCeEEeccCCCCeeeCCCCcEEEecccCCccc
Q 001275 927 GAAHALAYLHY-DCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLL 972 (1109)
Q Consensus 927 ~i~~~L~~LH~-~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~ 972 (1109)
.+....+++.. .....++|+|+++.||++++++.+.|+||+.+..-
T Consensus 198 ~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~g 244 (362)
T 3ovc_A 198 ALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG 244 (362)
T ss_dssp HHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEE
T ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccC
Confidence 12222223321 11256899999999999987777889999988743
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=97.67 E-value=5.5e-05 Score=85.65 Aligned_cols=80 Identities=6% Similarity=-0.002 Sum_probs=54.0
Q ss_pred cee-ecccCeEEEEEEeC-------CCcEEEEEEeeeccc--ccChHHHHHHHHHHhcCC-C--CceeeEeeEEecC---
Q 001275 825 HVI-GRGAHGIVYKASLG-------PNAVFAVKKLAFRGH--KRGSLSMKREIQTIGKIR-H--RNLVRLEDFWLRK--- 888 (1109)
Q Consensus 825 ~~l-G~G~~g~Vy~~~~~-------~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~--- 888 (1109)
+.| +.|....+|+.... +++.+++|....... ......+.+|+.+++.+. + -.+.+++.++.+.
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~ 105 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL 105 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence 557 78889999998654 266788886532210 112246788988888884 2 3566777777654
Q ss_pred CceeEEEEeccCCCHH
Q 001275 889 DCGIIMYRYMENGSLR 904 (1109)
Q Consensus 889 ~~~~lv~e~~~~gsL~ 904 (1109)
+..++||||++|.++.
T Consensus 106 g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 106 GTPFFLMDYVEGVVPP 121 (357)
T ss_dssp SSCEEEEECCCCBCCC
T ss_pred CCceEEEEecCCCChh
Confidence 3468999999986653
No 424
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=2.3e-05 Score=77.59 Aligned_cols=84 Identities=10% Similarity=0.090 Sum_probs=53.7
Q ss_pred cccceeeccCcccCCCCCccccCCCCccEEEccCcc-ccccCchHHHhh----cccceeeccCCc-cCCCCchhhhccCC
Q 001275 335 KYLTVLHLYANQLEGEIPDELGQLSNLQDLELFDNR-LTGEFPVSIWRI----ASLEYLLVYNNN-LLGKLPLEMTELKQ 408 (1109)
Q Consensus 335 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l----~~L~~L~l~~N~-l~~~~~~~~~~l~~ 408 (1109)
..|+.||++++.+++..-..+..+++|++|+|++|. +++..-..+..+ ++|++|+|++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666665555556667777777777774 665444445543 367777777764 66555555666777
Q ss_pred CCeEEccCCc
Q 001275 409 LKNISLYNNQ 418 (1109)
Q Consensus 409 L~~L~L~~N~ 418 (1109)
|+.|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777664
No 425
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.53 E-value=2.3e-05 Score=77.56 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=16.5
Q ss_pred CccEEEecccc-ccCcCchhcccccccccccccCc
Q 001275 216 RLQELYLNENK-LMGFLPESLSNLENLVYLDVGDN 249 (1109)
Q Consensus 216 ~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~L~~N 249 (1109)
+|++|+|++|. ||...-..+.++++|++|+++++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 45555555542 44433344444555555555544
No 426
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.49 E-value=0.00023 Score=79.89 Aligned_cols=140 Identities=15% Similarity=0.210 Sum_probs=79.2
Q ss_pred ceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCC--CCceeeEee------EEecCCceeEEEE
Q 001275 825 HVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIR--HRNLVRLED------FWLRKDCGIIMYR 896 (1109)
Q Consensus 825 ~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~------~~~~~~~~~lv~e 896 (1109)
+.++.|..+.||+....+| .+++|+... ...++..|+.++..+. .-.+.+++. +....+..++|||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~-----~~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~ 111 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHR-----PEKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYD 111 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECS-----CHHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEE
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCC-----CHHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEE
Confidence 3466677899999987755 488888743 1234445556555552 112333332 1223566789999
Q ss_pred eccCCCHH--------------HHHhccCC----C-------CCCCHHHHH-----------------------------
Q 001275 897 YMENGSLR--------------DVLHSITP----P-------PTLEWNVRY----------------------------- 922 (1109)
Q Consensus 897 ~~~~gsL~--------------~~l~~~~~----~-------~~l~~~~~~----------------------------- 922 (1109)
|++|.++. ..+|.... + ..-.|...+
T Consensus 112 ~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 191 (346)
T 2q83_A 112 WIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQE 191 (346)
T ss_dssp CCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred eecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 99986532 11222110 1 012332211
Q ss_pred --HHHHHHHHHHHHhhc----------CCCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 923 --KIALGAAHALAYLHY----------DCDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 923 --~i~~~i~~~L~~LH~----------~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
.+...+.+++++|+. .....++|+|+++.||+++.++.+.|+||+.+.
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 192 IDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 111123345666652 025789999999999999888899999999765
No 427
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.43 E-value=0.00034 Score=80.31 Aligned_cols=76 Identities=9% Similarity=0.018 Sum_probs=49.6
Q ss_pred CceeecccCeEEEEEEeC-CCcEEEEEEeeeccc------ccChHHHHHHHHHHhcCCC--C-ceeeEeeEEecCCceeE
Q 001275 824 KHVIGRGAHGIVYKASLG-PNAVFAVKKLAFRGH------KRGSLSMKREIQTIGKIRH--R-NLVRLEDFWLRKDCGII 893 (1109)
Q Consensus 824 ~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~~E~~~l~~l~h--~-niv~l~~~~~~~~~~~l 893 (1109)
.+.+|.|..+.||+++.. +++.++||....... .....++..|.++++.+.. + .+.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 456999999999999754 467899997642211 1234467789888887732 3 34455543 3456789
Q ss_pred EEEeccCC
Q 001275 894 MYRYMENG 901 (1109)
Q Consensus 894 v~e~~~~g 901 (1109)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999864
No 428
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.18 E-value=0.0011 Score=72.34 Aligned_cols=78 Identities=12% Similarity=0.131 Sum_probs=55.6
Q ss_pred CCCCCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCC---CceeeEeeEEecCCceeEEEE
Q 001275 820 NLNAKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRH---RNLVRLEDFWLRKDCGIIMYR 896 (1109)
Q Consensus 820 ~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~l~~~~~~~~~~~lv~e 896 (1109)
.....+.+|.|..+.||+.+..+|+.|++|+-... .......|.+|+..|+.+.- --+.+.+++ +..++|||
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~-~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~lv~e 90 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDD-APALDGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTLAME 90 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTT-CCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEEEEE
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCC-CcchhhHHHHHHHHHHHHHhhCCCCcceEEec----cCceEEEE
Confidence 34446679999999999999999999999975322 23334568899999888742 234445544 23578999
Q ss_pred eccCCC
Q 001275 897 YMENGS 902 (1109)
Q Consensus 897 ~~~~gs 902 (1109)
|++++.
T Consensus 91 ~l~~~~ 96 (288)
T 3f7w_A 91 WVDERP 96 (288)
T ss_dssp CCCCCC
T ss_pred eecccC
Confidence 998764
No 429
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.11 E-value=0.00011 Score=74.15 Aligned_cols=63 Identities=10% Similarity=0.104 Sum_probs=28.3
Q ss_pred ccCCCCeEEccCCcCccc----CCccccCCCCCceEEecCC---ccccc----CCCCcccCccceEEECCCccc
Q 001275 405 ELKQLKNISLYNNQFSGV----IPQSLGINSSLMQLDFINN---SFTGE----IPPNLCFGKQLRVLNMGQNQF 467 (1109)
Q Consensus 405 ~l~~L~~L~L~~N~l~~~----~p~~~~~~~~L~~L~ls~N---~l~~~----~p~~~~~~~~L~~L~L~~N~l 467 (1109)
.-+.|+.|+|++|+|... +.+.+..++.|++|+|++| .+... +...+..-+.|+.|+++.|.+
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 334455555555555432 2223334455666666543 22221 122233335566666665554
No 430
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.02 E-value=0.0052 Score=67.43 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=92.2
Q ss_pred CceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCC---CCceeeEeeEEecCCceeEEEEeccC
Q 001275 824 KHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIR---HRNLVRLEDFWLRKDCGIIMYRYMEN 900 (1109)
Q Consensus 824 ~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~ 900 (1109)
.+.++.|....+|+.... +..+++|+... .....+.+|++.++.+. ...+.++++++...+..++||||+++
T Consensus 41 ~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~----~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G 115 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLINDE-VQTVFVKINER----SYRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNK 115 (312)
T ss_dssp EEEECCSSSSEEEEEESS-SCEEEEEEEEG----GGHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred eEEeCCccceeeeEEEEC-CCeEEEEeCCc----ccHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccC
Confidence 466899999999999864 67788887632 23557889999888883 36688888888878889999999998
Q ss_pred CCHH-----------HHHhccCCCC-------------------CCCHHHHH---HHHH----------------HHHHH
Q 001275 901 GSLR-----------DVLHSITPPP-------------------TLEWNVRY---KIAL----------------GAAHA 931 (1109)
Q Consensus 901 gsL~-----------~~l~~~~~~~-------------------~l~~~~~~---~i~~----------------~i~~~ 931 (1109)
..+. ..+|.....+ .-+|.... ++.. .+++.
T Consensus 116 ~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~ 195 (312)
T 3jr1_A 116 SKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQI 195 (312)
T ss_dssp CCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 7641 1234332200 12465432 1111 11111
Q ss_pred -HHHhh-cCCCCCeEEeccCCCCeeeCCCCcEEEeccc
Q 001275 932 -LAYLH-YDCDPPIVHRDIKPENILLDSEMEPHISDFG 967 (1109)
Q Consensus 932 -L~~LH-~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfG 967 (1109)
...|. ....+.++|+|+.+.||+++.++ +.|.|+.
T Consensus 196 l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 196 VADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 22332 12256799999999999999887 8899973
No 431
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.00 E-value=0.00014 Score=73.35 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=54.4
Q ss_pred ccccccEEEcCCC-CCCCC----CCCccccccccceeeccCcccCCCCCccc----cCCCCccEEEccCccccccCchHH
Q 001275 309 LLARLSSLDLSEN-QLSGK----IPPELGKCKYLTVLHLYANQLEGEIPDEL----GQLSNLQDLELFDNRLTGEFPVSI 379 (1109)
Q Consensus 309 ~l~~L~~L~Ls~N-~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~l----~~l~~L~~L~L~~N~l~~~~~~~~ 379 (1109)
.-+.|++|+|++| +|... +.+.+..-+.|+.|+|++|+|.+.....+ ..-+.|++|+|++|.|++..-..+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3355666666664 55421 22233344555555555555543222222 223444555555554443222222
Q ss_pred HhhcccceeeccCCccCCCCchhhhccCCCCeEEccCC---cCcc----cCCccccCCCCCceEEecCCccc
Q 001275 380 WRIASLEYLLVYNNNLLGKLPLEMTELKQLKNISLYNN---QFSG----VIPQSLGINSSLMQLDFINNSFT 444 (1109)
Q Consensus 380 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N---~l~~----~~p~~~~~~~~L~~L~ls~N~l~ 444 (1109)
. ..+..-+.|+.|+|++| ++.. .+.+.+..+++|+.|+++.|.+.
T Consensus 119 a--------------------~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 L--------------------RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp H--------------------HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred H--------------------HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2 22333445666666543 3332 13334456677777777766543
No 432
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=96.62 E-value=0.006 Score=70.38 Aligned_cols=80 Identities=9% Similarity=0.092 Sum_probs=48.7
Q ss_pred CCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccC---CCCccCcchhhHHHHHH
Q 001275 940 DPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTT---AKSKESDVYSYGVVLLE 1016 (1109)
Q Consensus 940 ~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~sDvwSlGvil~e 1016 (1109)
...++|||+++.||+++.++ ++++||+.+..-.......... ..-...|.+|+..... ......++......+|+
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dla~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDIGAYL-GNLILAFFAQDGHATQENDRKEYKQWILRTIEQTWN 308 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHHHHHH-HHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHHHHHH-HHHHHHHHhcccccccccchHHHHHHHHHHHHHHHH
Confidence 67899999999999998876 9999999887432110000000 0011346666644311 11233555678888888
Q ss_pred HHhCC
Q 001275 1017 LITRK 1021 (1109)
Q Consensus 1017 lltg~ 1021 (1109)
.++++
T Consensus 309 ~y~~~ 313 (420)
T 2pyw_A 309 LFNKR 313 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 433
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=96.53 E-value=0.0053 Score=67.30 Aligned_cols=72 Identities=10% Similarity=0.153 Sum_probs=44.5
Q ss_pred CCceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCce-eeEeeEEecCCceeEEEEec-cC
Q 001275 823 AKHVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNL-VRLEDFWLRKDCGIIMYRYM-EN 900 (1109)
Q Consensus 823 ~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~-~~ 900 (1109)
-.+.++.|....+|+. ..+++|+..... ....+..+|+.+++.+....+ .+++++ ..+..++|+||+ ++
T Consensus 22 ~i~~l~gG~tN~~~~~-----~~~vlR~~~~~~--~~~~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~~g 92 (301)
T 3dxq_A 22 GPLERLGGLTNLVFRA-----GDLCLRIPGKGT--EEYINRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIAGA 92 (301)
T ss_dssp SCEEEESCSSEEEEEE-----TTEEEEEECC------CCCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCTTC
T ss_pred ceeEcCCcccccccee-----eeEEEECCCCCc--cceeCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecCCC
Confidence 3678999999999999 557888764321 111234568777777642223 344443 344568999999 55
Q ss_pred CCH
Q 001275 901 GSL 903 (1109)
Q Consensus 901 gsL 903 (1109)
.++
T Consensus 93 ~~l 95 (301)
T 3dxq_A 93 QTM 95 (301)
T ss_dssp EEC
T ss_pred ccC
Confidence 443
No 434
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=96.49 E-value=0.0071 Score=66.92 Aligned_cols=158 Identities=11% Similarity=0.091 Sum_probs=85.7
Q ss_pred ccHHHHHHHhhCCCCC-----ceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCCc--eeeE
Q 001275 809 YLLKQVIEATENLNAK-----HVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRN--LVRL 881 (1109)
Q Consensus 809 ~~~~~~~~~~~~~~~~-----~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l 881 (1109)
.+.+++...-+.|... +.++.|....+|+....++ .+++|..... .....+..|+.++..+.... +.++
T Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~---~~~~~l~~e~~~l~~L~~~g~~vP~~ 82 (322)
T 2ppq_A 7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR---VEKNDLPFFLGLMQHLAAKGLSCPLP 82 (322)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC------CCHHHHHHHHHHHHHHTTCCCCCB
T ss_pred CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC---CCHHHHHHHHHHHHHHHHCCCCCCcc
Confidence 3344555555556542 3466788899999987766 5778877432 12335667777777763212 2333
Q ss_pred eeE------EecCCceeEEEEeccCCCHH--------------HHHhccC----CCC--C---CCHHHHHHH--------
Q 001275 882 EDF------WLRKDCGIIMYRYMENGSLR--------------DVLHSIT----PPP--T---LEWNVRYKI-------- 924 (1109)
Q Consensus 882 ~~~------~~~~~~~~lv~e~~~~gsL~--------------~~l~~~~----~~~--~---l~~~~~~~i-------- 924 (1109)
+.. ....+..+++++|++|..+. ..+|... ... . ..|...+.-
T Consensus 83 ~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 162 (322)
T 2ppq_A 83 LPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEV 162 (322)
T ss_dssp CCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGT
T ss_pred cCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhh
Confidence 321 12235568999999986431 0122211 110 0 123321110
Q ss_pred ----HHHHHHHHHHhhc----CCCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 925 ----ALGAAHALAYLHY----DCDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 925 ----~~~i~~~L~~LH~----~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
...+.+.+++++. .....++|+|+.+.||+++++..+.++||+.+.
T Consensus 163 ~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 163 EKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp STTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 0113344555542 123568999999999999887666899998765
No 435
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.45 E-value=0.0049 Score=68.63 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=71.8
Q ss_pred ceeecccCeE-EEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCC--CceeeEeeEEecCCceeEEEEeccCC
Q 001275 825 HVIGRGAHGI-VYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRH--RNLVRLEDFWLRKDCGIIMYRYMENG 901 (1109)
Q Consensus 825 ~~lG~G~~g~-Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lv~e~~~~g 901 (1109)
+.++.|+... +|+....+++.+++|...... ..++..|+.++..+.. -.+.+++.+... ..+++||++.+.
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~----~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~--~g~ll~e~l~~~ 97 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE----GGDTQPFVDLAQYLRNLDISAPEIYAEEHA--RGLLLIEDLGDA 97 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTT----TCCSHHHHHHHHHHHHTTCBCCCEEEEETT--TTEEEECCCCSC
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCC----CccccHHHHHHHHHHhCCCCCCceeeecCC--CCEEEEeeCCCc
Confidence 3465555444 667766446677776542211 1234556666666632 234556665333 237899999877
Q ss_pred CHHHHHhcc---------------------CCC--CCCCHHHHH-------H-------------HHHHHHHHHHHhh--
Q 001275 902 SLRDVLHSI---------------------TPP--PTLEWNVRY-------K-------------IALGAAHALAYLH-- 936 (1109)
Q Consensus 902 sL~~~l~~~---------------------~~~--~~l~~~~~~-------~-------------i~~~i~~~L~~LH-- 936 (1109)
++.+++... ... +.++..... . ....+.+.++.+.
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~ 177 (333)
T 3csv_A 98 LFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSA 177 (333)
T ss_dssp BHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 775544221 100 112111100 0 0001112222221
Q ss_pred -cCCCCCeEEeccCCCCeeeCCC----CcEEEecccCCcc
Q 001275 937 -YDCDPPIVHRDIKPENILLDSE----MEPHISDFGIAKL 971 (1109)
Q Consensus 937 -~~~~~~ivH~Dlk~~NIll~~~----~~~kl~DfGla~~ 971 (1109)
......++|||+.+.||+++.+ +.+.|+||+.+..
T Consensus 178 ~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 178 QLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp HCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred cccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 1124578999999999999875 6799999998763
No 436
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.41 E-value=0.021 Score=63.28 Aligned_cols=141 Identities=16% Similarity=0.129 Sum_probs=80.4
Q ss_pred ceeecccCeEEEEEEeCCCcEEEEEEeeecccccChHHHHHHHHHHhcCCCC--ceeeEeeE-----EecCCceeEEEEe
Q 001275 825 HVIGRGAHGIVYKASLGPNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHR--NLVRLEDF-----WLRKDCGIIMYRY 897 (1109)
Q Consensus 825 ~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~l~~~-----~~~~~~~~lv~e~ 897 (1109)
+.++ |....||+....+|+.+++|..... ......+..|..++..+... .+.+++.. ....+..++|+||
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~--~~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~ 108 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPE--RWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPS 108 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTT--TSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEEC
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCC--CCCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEe
Confidence 4566 8888999998777878899987422 12345677788888777421 23444443 1223455789999
Q ss_pred ccCCCHH-----H------H---HhccCC------CCCCCHHHH----------------------HHHHHHHHHHHHHh
Q 001275 898 MENGSLR-----D------V---LHSITP------PPTLEWNVR----------------------YKIALGAAHALAYL 935 (1109)
Q Consensus 898 ~~~gsL~-----~------~---l~~~~~------~~~l~~~~~----------------------~~i~~~i~~~L~~L 935 (1109)
++|.++. . . +|.... ....++... ...+..++..++-.
T Consensus 109 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (328)
T 1zyl_A 109 VGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAH 188 (328)
T ss_dssp CCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9875421 1 1 121100 112222211 01111112222211
Q ss_pred hc-CCCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 936 HY-DCDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 936 H~-~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
-. .....++|+|+++.||+++ + .+.++||+.+.
T Consensus 189 ~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~ 222 (328)
T 1zyl_A 189 WREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDAR 222 (328)
T ss_dssp CCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred hhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence 11 1245578999999999999 4 89999998775
No 437
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.98 E-value=0.0067 Score=57.02 Aligned_cols=56 Identities=18% Similarity=0.225 Sum_probs=31.8
Q ss_pred eeeccccccc-ccCCccccCCCCccEEEecCccccCCCCcccccccccceecccccccc
Q 001275 554 TLNISLNHVE-GSLPSQLSKCKNLEVFDVSFNLLNGSIPSSLRSWKSLSILKLSENHFT 611 (1109)
Q Consensus 554 ~L~L~~N~l~-~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 611 (1109)
.++-++++++ ..+|..+. .+|+.|||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3444444443 23444333 45667777777776444455666666666666666665
No 438
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.96 E-value=0.0088 Score=56.22 Aligned_cols=38 Identities=24% Similarity=0.177 Sum_probs=28.2
Q ss_pred CCCcEeeccCccccCCCCccccccCccceecccccccc
Q 001275 119 SALEYLDLSTNGFTGDIPDNFENLQNLQYLNLYGNLLD 156 (1109)
Q Consensus 119 ~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~L~~n~l~ 156 (1109)
++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 45777788888877665667777888888888888664
No 439
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=95.67 E-value=0.011 Score=68.25 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=47.6
Q ss_pred CceeecccCeEEEEEEeCC--------CcEEEEEEeeecccccChHHHHHHHHHHhcCCCCce-eeEeeEEecCCceeEE
Q 001275 824 KHVIGRGAHGIVYKASLGP--------NAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNL-VRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 824 ~~~lG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv 894 (1109)
.+.|+.|....||++...+ +..+++|+.... .....+.+|..+++.+...++ .++++.+.. .+|
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~---~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v 150 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP---ETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRL 150 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC---CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC---CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEE
Confidence 3568888899999998753 477888876221 111456689988888843333 556665432 389
Q ss_pred EEeccCCC
Q 001275 895 YRYMENGS 902 (1109)
Q Consensus 895 ~e~~~~gs 902 (1109)
+||++|.+
T Consensus 151 ~e~l~G~~ 158 (429)
T 1nw1_A 151 EEYIPSRP 158 (429)
T ss_dssp ECCCCEEE
T ss_pred EEEeCCcc
Confidence 99998643
No 440
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=95.41 E-value=0.019 Score=64.67 Aligned_cols=141 Identities=16% Similarity=0.149 Sum_probs=81.3
Q ss_pred CceeecccCeEEEEEEeC--------CCcEEEEEEeeecccccChHHHHHHHHHHhcCC-CCceeeEeeEEecCCceeEE
Q 001275 824 KHVIGRGAHGIVYKASLG--------PNAVFAVKKLAFRGHKRGSLSMKREIQTIGKIR-HRNLVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 824 ~~~lG~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv 894 (1109)
.+.+..|-...+|+.... +++.+++|+... .......+.+|.++++.+. +.-..++++++.+ .+|
T Consensus 55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~--~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v 128 (379)
T 3feg_A 55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGA--ILQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRL 128 (379)
T ss_dssp CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC-----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEE
T ss_pred EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCC--ccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccE
Confidence 345777888999999875 246788887522 2234556778999998884 2223556665543 289
Q ss_pred EEeccCCCHHH-----------------HHhccCC--CCCC--CHHHHHHHHHHHHH-------------------HHHH
Q 001275 895 YRYMENGSLRD-----------------VLHSITP--PPTL--EWNVRYKIALGAAH-------------------ALAY 934 (1109)
Q Consensus 895 ~e~~~~gsL~~-----------------~l~~~~~--~~~l--~~~~~~~i~~~i~~-------------------~L~~ 934 (1109)
+||++|.++.. -+|.... .... -|..+.++..++.. .++.
T Consensus 129 ~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (379)
T 3feg_A 129 EQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGN 208 (379)
T ss_dssp EECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHH
T ss_pred EEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHH
Confidence 99998755421 1122211 1112 24444444433321 1222
Q ss_pred h----hc-CCCCCeEEeccCCCCeeeCCC----CcEEEecccCCc
Q 001275 935 L----HY-DCDPPIVHRDIKPENILLDSE----MEPHISDFGIAK 970 (1109)
Q Consensus 935 L----H~-~~~~~ivH~Dlk~~NIll~~~----~~~kl~DfGla~ 970 (1109)
| .. .....++|+|+.+.||+++.+ +.+.++||..+.
T Consensus 209 L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~ 253 (379)
T 3feg_A 209 LRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS 253 (379)
T ss_dssp HHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred HHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence 2 21 123468899999999999876 789999998775
No 441
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=95.24 E-value=0.012 Score=66.50 Aligned_cols=72 Identities=8% Similarity=0.074 Sum_probs=42.2
Q ss_pred ceeecccCeEEEEEEeCC---------CcEEEEEEeeecccccChHHHHHHHHHHhcCCCCc-eeeEeeEEecCCceeEE
Q 001275 825 HVIGRGAHGIVYKASLGP---------NAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRN-LVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 825 ~~lG~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lv 894 (1109)
+.++.|....+|+....+ ++.+++|+.... .....+...|.++++.+...+ +.++++.. ..++|
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~~~~~E~~~l~~L~~~g~~P~~~~~~----~~~~v 112 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKH--VDELYNTISEFEVYKTMSKYKIAPQLLNTF----NGGRI 112 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTT--GGGTSCHHHHHHHHHHHHHTTSSCCEEEEE----TTEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCC--ccceecHHHHHHHHHHHHhcCCCCceEEec----CCcEE
Confidence 457788889999998764 267778765321 111123467888888774333 34555443 23789
Q ss_pred EEeccCCC
Q 001275 895 YRYMENGS 902 (1109)
Q Consensus 895 ~e~~~~gs 902 (1109)
|||++|.+
T Consensus 113 ~e~i~G~~ 120 (369)
T 3c5i_A 113 EEWLYGDP 120 (369)
T ss_dssp EECCCSEE
T ss_pred EEEecCCc
Confidence 99998754
No 442
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=94.94 E-value=0.042 Score=63.61 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=47.0
Q ss_pred CceeecccCeEEEEEEeCC-CcEEEEEEeeecccccChHHHHHHHHHHhcCCCCce-eeEeeEEecCCceeEEEEeccCC
Q 001275 824 KHVIGRGAHGIVYKASLGP-NAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRNL-VRLEDFWLRKDCGIIMYRYMENG 901 (1109)
Q Consensus 824 ~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~g 901 (1109)
.+.|+.|-...+|+....+ +..+++|+..... ....+..+|..++..+...++ .++++++. + ..|+||++|.
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~--~~~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~ 186 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKT--DEIINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGY 186 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-C--CSCSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCCh--hhhcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCc
Confidence 3568888899999998875 4778888763221 112233688888888864444 45666652 2 3599999874
Q ss_pred CH
Q 001275 902 SL 903 (1109)
Q Consensus 902 sL 903 (1109)
++
T Consensus 187 ~l 188 (458)
T 2qg7_A 187 AL 188 (458)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 443
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=94.93 E-value=0.073 Score=59.17 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=27.8
Q ss_pred CCCeEEeccCCCCeeeCCCCcEEEecccCCcc
Q 001275 940 DPPIVHRDIKPENILLDSEMEPHISDFGIAKL 971 (1109)
Q Consensus 940 ~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~ 971 (1109)
...++|+|+.+.||++++++.+.++||+.+..
T Consensus 205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~ 236 (339)
T 3i1a_A 205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPML 236 (339)
T ss_dssp GCEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred CceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence 45689999999999999888899999987653
No 444
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=94.27 E-value=0.16 Score=51.37 Aligned_cols=120 Identities=10% Similarity=0.120 Sum_probs=73.1
Q ss_pred CHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCcccCCCCCCcee
Q 001275 902 SLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAKLLDKSPASTTS 981 (1109)
Q Consensus 902 sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~~~~~~~~~~~~ 981 (1109)
+|.++|...+. +++++++|.++.|.+++|.-.-....+ ..+=..|..|++..+|.|...+ +.+.
T Consensus 34 SL~eIL~~~~~--PlsEEqaWALc~Qc~~~L~~~~~~~~~--~~~i~~~~~i~l~~dG~V~f~~-~~s~----------- 97 (229)
T 2yle_A 34 SLEEILRLYNQ--PINEEQAWAVCYQCCGSLRAAARRRQP--RHRVRSAAQIRVWRDGAVTLAP-AADD----------- 97 (229)
T ss_dssp EHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHTTCC--CCCCCSGGGEEEETTSCEEECC-C--------------
T ss_pred cHHHHHHHcCC--CcCHHHHHHHHHHHHHHHHhhhhcccC--CceecCCcceEEecCCceeccc-cccc-----------
Confidence 79999988664 599999999999999998876211011 1222346889999999988764 1111
Q ss_pred eecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCCCccccccHHHHHHHh
Q 001275 982 ISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDPSYKERTDIVGWVRSV 1041 (1109)
Q Consensus 982 ~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~ 1041 (1109)
.....+.|||... ...+.+.=|||+|+++|..+--..|-+....-..++...+..+
T Consensus 98 ---~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~e~eE~eLS~~LE~LL~~M 153 (229)
T 2yle_A 98 ---AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLKENEERELSPPLEQLIDHM 153 (229)
T ss_dssp ------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCCTTEEECCCHHHHHHHHHH
T ss_pred ---ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCCcccchhhCHHHHHHHHHH
Confidence 1122466888653 3456788899999999999976655332222233344444333
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=92.92 E-value=0.15 Score=57.61 Aligned_cols=142 Identities=15% Similarity=0.147 Sum_probs=79.7
Q ss_pred ceeecccCeEEEEEEeCC--------CcEEEEEEeeecccc----------c-------ChHHHHHHHHHHhcCC-CCce
Q 001275 825 HVIGRGAHGIVYKASLGP--------NAVFAVKKLAFRGHK----------R-------GSLSMKREIQTIGKIR-HRNL 878 (1109)
Q Consensus 825 ~~lG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~----------~-------~~~~~~~E~~~l~~l~-h~ni 878 (1109)
+.+..|-...+|+....+ ...|.++........ . .......|..+++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 456668889999997754 367778776332111 0 0112234888888774 3334
Q ss_pred eeEeeEEecCCceeEEEEeccCCCHHH-----------------HHhccCC--CCCCC--HHHHHHHHHHHH--------
Q 001275 879 VRLEDFWLRKDCGIIMYRYMENGSLRD-----------------VLHSITP--PPTLE--WNVRYKIALGAA-------- 929 (1109)
Q Consensus 879 v~l~~~~~~~~~~~lv~e~~~~gsL~~-----------------~l~~~~~--~~~l~--~~~~~~i~~~i~-------- 929 (1109)
.++++++.. .+|+||++|.+|.. -+|.... ..... |....++..++.
T Consensus 138 Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 566666542 28999998654421 1122211 11122 333333333221
Q ss_pred --------------HHH----HHhhc-CCCCCeEEeccCCCCeeeCCC------CcEEEecccCCc
Q 001275 930 --------------HAL----AYLHY-DCDPPIVHRDIKPENILLDSE------MEPHISDFGIAK 970 (1109)
Q Consensus 930 --------------~~L----~~LH~-~~~~~ivH~Dlk~~NIll~~~------~~~kl~DfGla~ 970 (1109)
+-+ +++.. .....++|+|+.+.||+++++ +.+.++||..|.
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 111 22221 124457899999999999877 789999998765
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=90.34 E-value=0.5 Score=53.84 Aligned_cols=74 Identities=9% Similarity=0.036 Sum_probs=47.4
Q ss_pred CceeecccCeEEEEEEeCC--------CcEEEEEEeeecccccChHHHHHHHHHHhcCCCCc-eeeEeeEEecCCceeEE
Q 001275 824 KHVIGRGAHGIVYKASLGP--------NAVFAVKKLAFRGHKRGSLSMKREIQTIGKIRHRN-LVRLEDFWLRKDCGIIM 894 (1109)
Q Consensus 824 ~~~lG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lv 894 (1109)
.+.+..|-...+|+....+ ++.|++|+.... .....+..+|.++++.+...+ ..++++.+ ..+.|
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~--t~~~idR~~E~~~l~~L~~~gi~P~l~~~~----~~~~I 148 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKH--VGKFYDSKVELDVFRYLSNINIAPNIIADF----PEGRI 148 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCC--C-CCCCHHHHHHHHHHHHHTTSSCCEEEEE----TTEEE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCC--cchhcCHHHHHHHHHHHHhcCCCCCEEEEc----CCCEE
Confidence 3457778889999998763 577888875322 122234567888888874222 34455433 23789
Q ss_pred EEeccCCCH
Q 001275 895 YRYMENGSL 903 (1109)
Q Consensus 895 ~e~~~~gsL 903 (1109)
+||++|.++
T Consensus 149 ~efI~G~~l 157 (424)
T 3mes_A 149 EEFIDGEPL 157 (424)
T ss_dssp EECCCSEEC
T ss_pred EEEeCCccC
Confidence 999998653
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=78.27 E-value=0.48 Score=53.84 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=23.8
Q ss_pred eEEeccCCCCeee------CCCCcEEEecccCCc
Q 001275 943 IVHRDIKPENILL------DSEMEPHISDFGIAK 970 (1109)
Q Consensus 943 ivH~Dlk~~NIll------~~~~~~kl~DfGla~ 970 (1109)
++|+|+.+.||++ +++..++++||-.|.
T Consensus 246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~ 279 (401)
T 3g15_A 246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred eEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence 5699999999999 456779999998765
No 448
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=70.47 E-value=0.57 Score=54.20 Aligned_cols=61 Identities=8% Similarity=0.057 Sum_probs=17.6
Q ss_pred CCceeecccCeEEEEEEeCC-CcEEEE------EEeeecc-cccChHHHHHHHHHHhcCCCCceeeEeeEEe
Q 001275 823 AKHVIGRGAHGIVYKASLGP-NAVFAV------KKLAFRG-HKRGSLSMKREIQTIGKIRHRNLVRLEDFWL 886 (1109)
Q Consensus 823 ~~~~lG~G~~g~Vy~~~~~~-~~~vav------K~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 886 (1109)
..+.+| ||.||+|.+.. ..+||| |...... ..+....+.+|..+++..+|||+++.+++..
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 345676 99999998764 367888 6654322 2233446788999999999999999988754
No 449
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=69.78 E-value=11 Score=38.08 Aligned_cols=84 Identities=12% Similarity=0.122 Sum_probs=59.8
Q ss_pred CCCceeeEeeEEecCCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH-HhhcCCCCCeEEeccCCCC
Q 001275 874 RHRNLVRLEDFWLRKDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALA-YLHYDCDPPIVHRDIKPEN 952 (1109)
Q Consensus 874 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~-~LH~~~~~~ivH~Dlk~~N 952 (1109)
.||++ -...-...+...+.|+.-+++.=+..++. .+...+++++.+++.... +++ .-+|--+.|+|
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~~------~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~N 114 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIRK------TTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPEN 114 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHHT------SCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGG
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHHh------cCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCce
Confidence 57777 33444566666666666544422233332 778899999999988777 555 45778899999
Q ss_pred eeeCCCCcEEEecccCCc
Q 001275 953 ILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 953 Ill~~~~~~kl~DfGla~ 970 (1109)
++++.++.+++.-.|+-.
T Consensus 115 L~f~~~~~p~i~hRGi~~ 132 (219)
T 4ano_A 115 LMFNRALEPFFLHVGVKE 132 (219)
T ss_dssp EEECTTCCEEESCCEETT
T ss_pred EEEeCCCcEEEEEcCCcc
Confidence 999999999998877643
No 450
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=61.17 E-value=10 Score=38.19 Aligned_cols=117 Identities=12% Similarity=0.162 Sum_probs=75.0
Q ss_pred CCCceeeEeeEEecCCceeEEEEeccCCCHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEEeccCCCCe
Q 001275 874 RHRNLVRLEDFWLRKDCGIIMYRYMENGSLRDVLHSITPPPTLEWNVRYKIALGAAHALAYLHYDCDPPIVHRDIKPENI 953 (1109)
Q Consensus 874 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~NI 953 (1109)
.||+.+.. .+-...+...+.|+.-+ +..+|-.- ...+...+++++.+|+....+++ .-+|--+.|+|+
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~--~~~~f~~i----k~~~~~eKlr~l~ni~~l~~~~~-----~r~tf~L~P~NL 110 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDIND--NHTPFDNI----KSFTKNEKLRYLLNIKNLEEVNR-----TRYTFVLAPDEL 110 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCT--TSEEGGGG----GGSCHHHHHHHHHHGGGGGGGGG-----SSEECCCSGGGE
T ss_pred cCCcccce-EEEEcccEEEEEEEcCc--ccCCHHHH----HhcCHHHHHHHHHHHHHHHHHhc-----CceEEEEecceE
Confidence 57888765 44455555544444433 22222211 12778899999999998887666 347888999999
Q ss_pred eeCCCCcEEEecccCCcccCCCCCCceeeecccCcccccccccccCCCCccCcchhhHHHHHHHHhCCCCCCC
Q 001275 954 LLDSEMEPHISDFGIAKLLDKSPASTTSISVVGTIGYIAPENAFTTAKSKESDVYSYGVVLLELITRKKALDP 1026 (1109)
Q Consensus 954 ll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwSlGvil~elltg~~p~~~ 1026 (1109)
+++.++.+++.-.|+...+. |. ..+...=.-.+=+++..+++++..|+.
T Consensus 111 ~f~~~~~p~i~~RGik~~l~-------------------P~-----~~~ee~fL~qyKAliiall~~K~~Fe~ 159 (215)
T 4ann_A 111 FFTRDGLPIAKTRGLQNVVD-------------------PL-----PVSEAEFLTRYKALVICAFNEKQSFDA 159 (215)
T ss_dssp EECTTSCEEESCCEETTTBS-------------------CC-----CCCHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred EEcCCCCEEEEEccCccCCC-------------------CC-----CCCHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 99999999998877644332 11 111111123456688889999888753
No 451
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=53.78 E-value=1 Score=32.60 Aligned_cols=7 Identities=43% Similarity=0.762 Sum_probs=2.8
Q ss_pred EEEeecc
Q 001275 789 CLFRRRS 795 (1109)
Q Consensus 789 ~~~r~~~ 795 (1109)
+++|||+
T Consensus 33 ~~~RRr~ 39 (44)
T 2ks1_B 33 LFMRRRH 39 (44)
T ss_dssp HHHHTTT
T ss_pred HHhhhhH
Confidence 3344443
No 452
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=52.10 E-value=0.87 Score=32.84 Aligned_cols=7 Identities=43% Similarity=0.686 Sum_probs=2.7
Q ss_pred EEEeecc
Q 001275 789 CLFRRRS 795 (1109)
Q Consensus 789 ~~~r~~~ 795 (1109)
+++|||+
T Consensus 32 ~~~RRRr 38 (44)
T 2l2t_A 32 VYVRRKS 38 (44)
T ss_dssp HHHHTTC
T ss_pred HHhhhhh
Confidence 3334333
No 453
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=46.79 E-value=1.4 Score=30.78 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=8.8
Q ss_pred CCcceEEEeeehhHHHHH
Q 001275 761 GLNKVKIVVIALGSSLLT 778 (1109)
Q Consensus 761 ~~~~~~~~~i~~~~~~~~ 778 (1109)
+++...++.+++|+.+.+
T Consensus 7 ~ls~GaIAGiVvG~v~gv 24 (38)
T 2k1k_A 7 GLTGGEIVAVIFGLLLGA 24 (38)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CCCCCceeeeehHHHHHH
Confidence 444445555555544333
No 454
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=39.04 E-value=1.6e+02 Score=34.66 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHH--HHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 918 WNVRYKIALGAA--HALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 918 ~~~~~~i~~~i~--~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
|+.+..++..+| ..+.|+= || +|=.++|||++.+|++.=+|||.+-
T Consensus 454 ~~a~~nF~~S~A~ySvv~YIL-----Gi--gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 454 AEVMDTYVKSCAGYCVITYIL-----GV--GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----TC--CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred HHHHHHHHHHHHHHhHhheee-----ec--cCCCCcceeEcCCCCEeeeehHHhh
Confidence 556666666554 3455554 22 5778999999999999999999874
No 455
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=30.67 E-value=2.1e+02 Score=34.20 Aligned_cols=45 Identities=24% Similarity=0.249 Sum_probs=31.8
Q ss_pred HHHHHHHHHHH--HHHHHhhcCCCCCeEEeccCCCCeeeCCCCcEEEecccCCc
Q 001275 919 NVRYKIALGAA--HALAYLHYDCDPPIVHRDIKPENILLDSEMEPHISDFGIAK 970 (1109)
Q Consensus 919 ~~~~~i~~~i~--~~L~~LH~~~~~~ivH~Dlk~~NIll~~~~~~kl~DfGla~ 970 (1109)
..+..++..+| ..+.|+= + -+|=.++|||++.+|.+.-+|||.+-
T Consensus 529 ~ar~nF~~SlA~~Svv~YIL-----G--lGDRH~~NILid~tG~v~HIDFG~~f 575 (696)
T 2x6h_A 529 EVMDTYIKSCAGYCVITYLL-----G--VGDRHLDNLLLTTNGKLFHIDFGYIL 575 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----T--CCCCCTTTEEECTTSCEEECCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHc-----c--CCCCCCcceEEeCCCCEEEEeehhhh
Confidence 44555555544 3344443 2 26888999999999999999999874
No 456
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=28.28 E-value=7.2 Score=28.20 Aligned_cols=18 Identities=11% Similarity=-0.284 Sum_probs=9.4
Q ss_pred HHHHHhheeeEEEeeccc
Q 001275 779 VLVMLGLVSCCLFRRRSK 796 (1109)
Q Consensus 779 ~~~~~~~~~~~~~r~~~~ 796 (1109)
++++..++++.++|++++
T Consensus 26 ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHHHHTTTCCSC
T ss_pred HHHHHHHHHhhhhHhhcc
Confidence 444444566666655543
No 457
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.10 E-value=97 Score=26.73 Aligned_cols=70 Identities=9% Similarity=-0.068 Sum_probs=0.0
Q ss_pred CcccCCcccccccCCCCcchhccccccccCCCCcccccccCCcEEEeecCCCCCcCCccccccccccEEEc
Q 001275 248 DNNLEGRINFGSEKCKNLTFLDLSYNRFSGGISPNLGNCSSLTHLDIVGSKLTGSIPSSFGLLARLSSLDL 318 (1109)
Q Consensus 248 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 318 (1109)
+..++......|.+|.+|+.+.+-.+ ++.....+|.++.+|+.+.+.+..-.......+..-.....+.+
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~P~~~~~~~~~~~~~~~~i~V 74 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGEDPSAYSAGDGLRDGADFLICV 74 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSCGGGCCCTTTTTTTCCCCEEE
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCCCCeEeccccccccccccccC
No 458
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=21.21 E-value=28 Score=20.15 Aligned_cols=9 Identities=44% Similarity=1.335 Sum_probs=6.8
Q ss_pred CCceeeeEE
Q 001275 57 TPCQWVGIE 65 (1109)
Q Consensus 57 ~~c~w~gv~ 65 (1109)
..|+|.|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 369999874
Done!