Query 001276
Match_columns 1109
No_of_seqs 795 out of 5659
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 19:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a8c_A Periplasmic PH-dependen 100.0 1.2E-52 3.9E-57 495.8 49.1 383 31-456 8-420 (436)
2 3pv2_A DEGQ; trypsin fold, PDZ 100.0 2.4E-52 8.4E-57 493.8 37.0 383 35-456 18-443 (451)
3 4fln_A Protease DO-like 2, chl 100.0 3.1E-51 1.1E-55 486.2 46.3 374 44-452 45-469 (539)
4 4a8c_A Periplasmic PH-dependen 100.0 1.1E-48 3.7E-53 461.9 46.7 398 619-1081 16-433 (436)
5 1ky9_A Protease DO, DEGP, HTRA 100.0 3.1E-50 1.1E-54 475.5 25.7 375 35-455 12-439 (448)
6 4fln_A Protease DO-like 2, chl 100.0 4E-48 1.4E-52 459.5 41.7 392 624-1074 45-478 (539)
7 3pv2_A DEGQ; trypsin fold, PDZ 100.0 5.8E-49 2E-53 465.0 32.3 399 620-1076 23-451 (451)
8 3stj_A Protease DEGQ; serine p 100.0 4.7E-45 1.6E-49 417.3 34.7 304 32-370 9-337 (345)
9 1ky9_A Protease DO, DEGP, HTRA 100.0 2.1E-46 7.1E-51 442.8 20.1 356 650-1076 86-448 (448)
10 1te0_A Protease DEGS; two doma 100.0 1.8E-41 6E-46 385.2 32.2 300 33-368 6-316 (318)
11 1lcy_A HTRA2 serine protease; 100.0 8.6E-41 2.9E-45 380.3 27.0 309 32-365 11-322 (325)
12 3qo6_A Protease DO-like 1, chl 100.0 6.3E-40 2.2E-44 376.6 27.6 302 31-369 12-335 (348)
13 3num_A Serine protease HTRA1; 100.0 1.9E-40 6.6E-45 378.9 19.8 311 32-367 10-322 (332)
14 3stj_A Protease DEGQ; serine p 100.0 1E-38 3.4E-43 364.9 32.5 302 619-976 16-336 (345)
15 1y8t_A Hypothetical protein RV 100.0 1.2E-38 4E-43 363.2 31.6 288 35-368 5-315 (324)
16 1te0_A Protease DEGS; two doma 100.0 9.3E-36 3.2E-40 338.1 29.1 300 620-975 13-316 (318)
17 3qo6_A Protease DO-like 1, chl 100.0 4.3E-34 1.5E-38 328.2 28.2 298 621-975 22-334 (348)
18 1y8t_A Hypothetical protein RV 100.0 3.9E-33 1.3E-37 317.6 30.6 293 619-975 9-315 (324)
19 1lcy_A HTRA2 serine protease; 100.0 3.1E-33 1E-37 318.1 27.4 297 620-972 19-322 (325)
20 3num_A Serine protease HTRA1; 100.0 7.3E-34 2.5E-38 324.5 19.4 303 620-975 18-323 (332)
21 3sti_A Protease DEGQ; serine p 100.0 2.8E-30 9.5E-35 280.7 19.8 203 33-246 10-235 (245)
22 1l1j_A Heat shock protease HTR 100.0 1.9E-29 6.5E-34 273.6 17.2 212 35-265 3-239 (239)
23 3lgi_A Protease DEGS; stress-s 100.0 6.2E-28 2.1E-32 262.3 23.5 204 31-246 15-227 (237)
24 3tjo_A Serine protease HTRA1; 100.0 4.7E-28 1.6E-32 261.9 18.3 203 32-244 27-230 (231)
25 3k6y_A Serine protease, possib 99.9 3E-24 1E-28 233.3 20.5 193 38-246 33-228 (237)
26 3sti_A Protease DEGQ; serine p 99.9 3.3E-24 1.1E-28 232.8 15.4 201 619-847 16-236 (245)
27 3lgi_A Protease DEGS; stress-s 99.9 4.1E-23 1.4E-27 224.2 22.8 203 619-847 23-228 (237)
28 1l1j_A Heat shock protease HTR 99.9 6.2E-24 2.1E-28 230.3 14.8 211 620-868 8-239 (239)
29 3tjo_A Serine protease HTRA1; 99.9 8.3E-22 2.8E-26 212.9 18.4 195 619-844 34-230 (231)
30 3k6y_A Serine protease, possib 99.8 2.3E-19 7.9E-24 194.8 18.6 191 620-847 35-229 (237)
31 2w5e_A Putative serine proteas 99.8 2.6E-19 9E-24 181.5 17.0 137 66-231 19-155 (163)
32 3rle_A Golgi reassembly-stacki 99.8 5.9E-18 2E-22 179.8 15.8 167 897-1080 13-184 (209)
33 2as9_A Serine protease; trypsi 99.7 8.5E-18 2.9E-22 179.0 11.9 179 47-244 3-203 (210)
34 3rle_A Golgi reassembly-stacki 99.7 3E-17 1E-21 174.4 13.9 151 295-456 14-170 (209)
35 2h5c_A Alpha-lytic protease; s 99.7 1.4E-16 4.7E-21 167.3 12.5 157 69-239 17-191 (198)
36 3gsl_A Disks large homolog 4; 99.7 2.2E-15 7.6E-20 158.1 19.8 153 899-1071 34-193 (196)
37 2l97_A HTRA, putative serine p 99.7 1.1E-16 3.6E-21 157.6 8.8 123 224-368 2-128 (134)
38 2w5e_A Putative serine proteas 99.6 3.6E-15 1.2E-19 151.1 16.7 126 648-810 19-145 (163)
39 3gsl_A Disks large homolog 4; 99.6 3.8E-15 1.3E-19 156.3 17.3 148 296-457 34-191 (196)
40 1p1d_A PDZ45, glutamate recept 99.6 5.4E-15 1.8E-19 155.5 16.5 145 900-1068 36-195 (196)
41 2w7s_A Serine protease SPLA; h 99.6 2.1E-15 7.2E-20 159.1 11.4 155 68-240 22-195 (200)
42 1p1d_A PDZ45, glutamate recept 99.6 6.3E-15 2.1E-19 155.0 14.5 144 296-455 35-194 (196)
43 1agj_A Epidermolytic toxin A; 99.6 3E-15 1E-19 162.9 11.6 160 67-242 54-240 (242)
44 1w9e_A Syntenin 1; cell adhesi 99.6 4.9E-15 1.7E-19 151.5 11.2 116 900-1045 27-144 (166)
45 2l97_A HTRA, putative serine p 99.6 1.6E-15 5.4E-20 149.2 7.0 118 828-974 6-127 (134)
46 2qt5_A Glutamate receptor-inte 99.6 3.2E-14 1.1E-18 150.1 15.9 148 900-1070 33-197 (200)
47 2qt5_A Glutamate receptor-inte 99.6 4.3E-14 1.5E-18 149.0 16.6 145 296-456 32-195 (200)
48 2oua_A Serine protease, protei 99.5 1.6E-14 5.3E-19 150.4 12.1 156 68-239 14-182 (188)
49 1w9e_A Syntenin 1; cell adhesi 99.5 6.4E-14 2.2E-18 143.2 16.1 145 258-452 13-162 (166)
50 3r0h_A INAD, inactivation-NO-a 99.5 5.5E-14 1.9E-18 148.9 16.1 138 900-1066 45-194 (206)
51 3r0h_A INAD, inactivation-NO-a 99.5 7.5E-14 2.6E-18 147.9 16.2 139 297-457 45-197 (206)
52 2vid_A Serine protease SPLB; h 99.5 7.8E-14 2.7E-18 147.3 15.3 156 68-241 22-200 (204)
53 2o8l_A V8 protease, taphylococ 99.5 2.6E-13 8.8E-18 150.3 17.0 169 47-241 20-208 (274)
54 1qtf_A Exfoliative toxin B; se 99.5 4.6E-14 1.6E-18 153.8 10.2 146 67-235 47-215 (246)
55 1hpg_A Glutamic acid specific 99.5 1.5E-13 5.1E-18 143.1 12.3 157 70-239 15-182 (187)
56 1wcz_A Glutamyl endopeptidase; 99.5 5.2E-13 1.8E-17 147.3 17.2 170 47-241 20-208 (268)
57 2ea3_A Chymotrypsin; celloulom 99.4 1.7E-13 5.7E-18 142.6 10.3 150 69-239 17-176 (189)
58 1mbm_A NSP4 proteinase, chymot 99.4 8.4E-14 2.9E-18 138.6 7.3 128 46-219 3-130 (198)
59 2as9_A Serine protease; trypsi 99.4 7E-13 2.4E-17 140.9 12.2 169 650-845 23-204 (210)
60 2pfe_A Protease A, alkaline se 99.4 2.4E-13 8E-18 141.0 8.2 151 71-239 18-179 (186)
61 2qa9_E Streptogrisin-B; chymot 99.4 1.4E-12 4.9E-17 135.6 11.0 161 68-239 12-180 (185)
62 2h5c_A Alpha-lytic protease; s 99.3 8.6E-12 2.9E-16 130.7 15.8 166 650-839 16-191 (198)
63 1agj_A Epidermolytic toxin A; 99.2 6.2E-11 2.1E-15 128.6 15.6 166 650-842 55-240 (242)
64 2sga_A Proteinase A; hydrolase 99.2 6.8E-12 2.3E-16 130.0 7.6 154 68-239 12-176 (181)
65 2pzd_A Serine protease HTRA2; 99.2 2.5E-11 8.6E-16 115.5 10.5 101 257-367 2-103 (113)
66 2xkx_A Disks large homolog 4; 99.2 6.9E-11 2.4E-15 147.9 16.6 152 900-1071 89-247 (721)
67 2xkx_A Disks large homolog 4; 99.2 5.9E-11 2E-15 148.5 15.1 145 296-455 88-243 (721)
68 3suz_A Amyloid beta A4 precurs 99.2 4.9E-12 1.7E-16 146.6 4.3 131 901-1062 233-369 (388)
69 2p3w_A Probable serine proteas 99.2 4.7E-11 1.6E-15 113.5 9.7 101 257-367 2-103 (112)
70 3suz_A Amyloid beta A4 precurs 99.2 8.3E-12 2.8E-16 144.7 3.7 130 297-452 232-370 (388)
71 3fan_A Non-structural protein; 99.2 2.6E-11 8.9E-16 122.9 6.5 117 66-221 28-146 (213)
72 2w7s_A Serine protease SPLA; h 99.1 1.4E-10 4.8E-15 122.0 11.5 137 650-810 22-172 (200)
73 2oua_A Serine protease, protei 99.1 2.8E-10 9.7E-15 118.2 12.8 158 650-839 14-182 (188)
74 1zyo_A Serine protease; beta-b 99.1 5.6E-10 1.9E-14 115.1 14.8 164 46-238 15-185 (191)
75 1qtf_A Exfoliative toxin B; se 99.1 1.8E-10 6.1E-15 125.4 9.9 137 650-809 48-203 (246)
76 2o8l_A V8 protease, taphylococ 99.1 2.6E-09 8.9E-14 118.0 19.0 175 627-845 20-212 (274)
77 1hpg_A Glutamic acid specific 99.1 1.4E-09 4.8E-14 113.1 14.9 161 651-839 14-182 (187)
78 2pzd_A Serine protease HTRA2; 99.1 4E-10 1.4E-14 107.2 9.6 100 984-1087 6-110 (113)
79 1uf1_A KIAA1526 protein; PDZ d 99.0 1E-10 3.5E-15 113.9 5.3 112 951-1083 8-119 (128)
80 1wcz_A Glutamyl endopeptidase; 99.0 4E-09 1.4E-13 116.1 17.1 166 649-845 33-212 (268)
81 2p3w_A Probable serine proteas 99.0 1.1E-09 3.7E-14 104.0 10.1 101 856-975 3-104 (112)
82 2vid_A Serine protease SPLB; h 99.0 9E-09 3.1E-13 108.3 16.2 164 650-843 22-202 (204)
83 2ea3_A Chymotrypsin; celloulom 99.0 3.5E-09 1.2E-13 110.0 12.6 152 651-839 17-176 (189)
84 3i18_A LMO2051 protein; alpha- 98.9 3.7E-09 1.3E-13 98.1 10.9 72 296-368 6-78 (100)
85 3id1_A Regulator of sigma E pr 98.9 2.1E-09 7.2E-14 98.7 9.1 81 302-382 6-91 (95)
86 2kl1_A YLBL protein; structure 98.9 2.3E-09 7.8E-14 98.3 9.2 73 295-368 3-76 (94)
87 2kjp_A Uncharacterized protein 98.9 5.7E-10 2E-14 101.6 5.0 70 298-368 2-72 (91)
88 2pfe_A Protease A, alkaline se 98.9 3.6E-09 1.2E-13 109.5 11.4 156 652-839 17-179 (186)
89 3i18_A LMO2051 protein; alpha- 98.9 6.7E-09 2.3E-13 96.3 11.3 69 1008-1078 7-75 (100)
90 2i6v_A General secretion pathw 98.9 3.6E-09 1.2E-13 95.5 8.9 67 1009-1076 20-86 (87)
91 3id1_A Regulator of sigma E pr 98.9 3.3E-09 1.1E-13 97.4 8.3 86 903-992 5-94 (95)
92 2qa9_E Streptogrisin-B; chymot 98.9 1.8E-08 6.3E-13 104.4 14.5 167 650-840 12-181 (185)
93 2i4s_A General secretion pathw 98.9 6.3E-09 2.2E-13 97.4 9.5 99 233-364 5-105 (105)
94 2vz5_A TAX1-binding protein 3; 98.9 6.6E-09 2.3E-13 102.4 9.9 97 257-366 34-135 (139)
95 2kjp_A Uncharacterized protein 98.8 1.4E-09 4.7E-14 99.1 3.6 69 1009-1079 2-70 (91)
96 2kl1_A YLBL protein; structure 98.8 7.8E-09 2.7E-13 94.7 8.3 69 1008-1078 5-73 (94)
97 2i6v_A General secretion pathw 98.8 1.8E-08 6.2E-13 90.9 9.5 68 900-971 19-87 (87)
98 1mbm_A NSP4 proteinase, chymot 98.8 1.5E-08 5.1E-13 101.2 9.6 115 647-809 12-130 (198)
99 2i4s_A General secretion pathw 98.8 1.5E-08 5.3E-13 94.8 8.9 67 1009-1076 38-104 (105)
100 1uf1_A KIAA1526 protein; PDZ d 98.7 6.4E-09 2.2E-13 101.1 5.8 97 342-456 6-104 (128)
101 2zpm_A Regulator of sigma E pr 98.7 1.7E-08 6E-13 91.7 7.1 65 302-366 8-73 (91)
102 2vz5_A TAX1-binding protein 3; 98.7 5E-08 1.7E-12 96.2 10.5 68 1008-1077 64-133 (139)
103 2zpm_A Regulator of sigma E pr 98.7 3.2E-08 1.1E-12 89.9 8.1 67 1010-1078 6-72 (91)
104 3cyy_A Tight junction protein 98.7 1.9E-08 6.4E-13 91.6 6.4 64 297-362 23-90 (92)
105 2fcf_A Multiple PDZ domain pro 98.7 3.8E-08 1.3E-12 91.7 8.7 83 259-356 14-100 (103)
106 2eaq_A LIM domain only protein 98.7 2.5E-08 8.7E-13 90.4 7.2 59 297-356 28-90 (90)
107 2eaq_A LIM domain only protein 98.7 2.5E-08 8.5E-13 90.4 6.5 60 1009-1069 29-90 (90)
108 2rcz_A Tight junction protein 98.7 2.8E-08 9.6E-13 88.0 6.4 77 264-355 1-81 (81)
109 1qau_A Neuronal nitric oxide s 98.6 1.1E-07 3.7E-12 90.1 10.4 71 297-368 26-100 (112)
110 3cyy_A Tight junction protein 98.6 7.8E-08 2.7E-12 87.4 8.7 65 1009-1076 24-91 (92)
111 1qau_A Neuronal nitric oxide s 98.6 1.1E-07 3.7E-12 90.0 9.8 69 1009-1079 27-98 (112)
112 3mmg_A Nuclear inclusion prote 98.6 9.7E-07 3.3E-11 92.3 17.2 164 46-233 15-183 (241)
113 2sga_A Proteinase A; hydrolase 98.6 1.3E-07 4.6E-12 97.5 10.8 158 650-839 12-176 (181)
114 2pkt_A PDZ and LIM domain prot 98.6 4.7E-08 1.6E-12 88.9 6.3 59 1009-1070 28-88 (91)
115 2v90_A PDZ domain-containing p 98.6 2.6E-08 8.7E-13 91.6 4.5 62 295-358 28-92 (96)
116 2pa1_A PDZ and LIM domain prot 98.6 1.2E-07 4E-12 85.4 8.7 58 1009-1069 27-86 (87)
117 2iwq_A Multiple PDZ domain pro 98.6 1.4E-07 4.9E-12 90.8 9.8 83 259-356 34-120 (123)
118 1p3c_A Glutamyl-endopeptidase; 98.6 3.5E-07 1.2E-11 97.0 13.7 136 67-221 29-190 (215)
119 1uit_A Human discs large 5 pro 98.6 3.8E-08 1.3E-12 94.0 5.4 89 257-359 11-105 (117)
120 2pkt_A PDZ and LIM domain prot 98.6 4.3E-08 1.5E-12 89.1 5.3 60 297-358 27-89 (91)
121 3sfj_A TAX1-binding protein 3; 98.6 1.1E-07 3.7E-12 88.7 8.0 59 295-354 43-104 (104)
122 1pq7_A Trypsin; ultra-high res 98.5 4.9E-07 1.7E-11 96.5 13.8 161 46-221 12-199 (224)
123 2eeh_A PDZ domain-containing p 98.5 2.2E-07 7.6E-12 86.0 9.7 58 297-357 36-96 (100)
124 2v90_A PDZ domain-containing p 98.5 6E-08 2E-12 89.1 5.6 60 1008-1070 30-91 (96)
125 1wh1_A KIAA1095 protein; PDZ d 98.5 5.5E-08 1.9E-12 93.9 5.4 65 1008-1074 48-113 (124)
126 2jil_A GRIP1 protein, glutamat 98.5 1E-07 3.5E-12 87.6 7.0 60 1008-1070 32-94 (97)
127 2vsp_A PDZ domain-containing p 98.5 8.9E-08 3.1E-12 87.0 6.4 60 1008-1070 27-88 (91)
128 2vsp_A PDZ domain-containing p 98.5 9E-08 3.1E-12 87.0 5.8 61 296-358 26-89 (91)
129 2w4f_A Protein LAP4; structura 98.5 1.1E-07 3.9E-12 87.3 6.4 62 1008-1070 34-95 (97)
130 3fan_A Non-structural protein; 98.5 1.2E-07 4E-12 96.4 6.7 114 647-811 27-146 (213)
131 1wh1_A KIAA1095 protein; PDZ d 98.5 1.1E-07 3.8E-12 91.7 6.3 64 296-360 47-112 (124)
132 3tsv_A Tight junction protein 98.5 1.8E-07 6.2E-12 90.2 7.6 61 1008-1069 51-113 (124)
133 2uzc_A Human pdlim5, PDZ and L 98.5 2.7E-07 9.2E-12 83.2 8.3 58 1009-1069 28-87 (88)
134 2hga_A Conserved protein MTH13 98.5 2.8E-07 9.6E-12 88.9 8.9 66 1008-1077 25-90 (125)
135 2he4_A Na(+)/H(+) exchange reg 98.5 2.9E-07 9.8E-12 83.4 8.5 59 296-356 27-88 (90)
136 2w4f_A Protein LAP4; structura 98.5 1.9E-07 6.5E-12 85.8 7.3 62 295-357 32-95 (97)
137 2pa1_A PDZ and LIM domain prot 98.5 2.2E-07 7.5E-12 83.6 7.5 58 297-356 26-86 (87)
138 2jxo_A Ezrin-radixin-moesin-bi 98.5 1.2E-07 3.9E-12 87.5 5.7 60 1008-1069 33-94 (98)
139 2edz_A PDZ domain-containing p 98.5 1.9E-08 6.6E-13 95.6 0.3 66 296-363 37-105 (114)
140 2dls_A PDZ-rhogef, RHO guanine 98.5 4.4E-07 1.5E-11 82.7 9.4 60 296-356 28-88 (93)
141 2i04_A Membrane-associated gua 98.5 4E-07 1.4E-11 81.5 8.8 54 1009-1062 26-82 (85)
142 2kom_A Partitioning defective 98.5 3.8E-07 1.3E-11 87.6 9.3 61 1008-1069 58-121 (121)
143 1ihj_A INAD; intermolecular di 98.5 3.1E-07 1.1E-11 84.6 8.2 59 1008-1069 37-98 (98)
144 3qik_A Phosphatidylinositol 3, 98.5 2.3E-07 7.9E-12 84.8 7.0 55 1009-1063 40-97 (101)
145 2koj_A Partitioning defective 98.5 3.5E-07 1.2E-11 86.3 8.6 62 1008-1070 39-103 (111)
146 2he4_A Na(+)/H(+) exchange reg 98.5 3.4E-07 1.2E-11 82.9 8.2 58 1008-1068 28-87 (90)
147 2fcf_A Multiple PDZ domain pro 98.5 3.6E-07 1.2E-11 85.0 8.5 59 1008-1069 39-100 (103)
148 1ihj_A INAD; intermolecular di 98.4 2.6E-07 8.9E-12 85.1 7.3 59 296-356 36-98 (98)
149 2jil_A GRIP1 protein, glutamat 98.4 1.6E-07 5.5E-12 86.3 5.9 60 296-357 31-94 (97)
150 2jxo_A Ezrin-radixin-moesin-bi 98.4 1.6E-07 5.3E-12 86.6 5.7 59 297-356 33-94 (98)
151 1x5q_A LAP4 protein; PDZ domai 98.4 2.3E-07 8E-12 87.4 7.0 63 295-358 44-108 (110)
152 3sfj_A TAX1-binding protein 3; 98.4 7.4E-07 2.5E-11 83.0 10.3 58 1007-1066 44-103 (104)
153 1b8q_A Protein (neuronal nitri 98.4 2E-07 6.8E-12 90.3 6.6 68 297-365 33-104 (127)
154 2eeh_A PDZ domain-containing p 98.4 2.4E-07 8.1E-12 85.8 6.5 58 1008-1069 36-95 (100)
155 1vb7_A PDZ and LIM domain 2; P 98.4 1.7E-07 5.7E-12 85.8 5.3 60 1008-1070 30-91 (94)
156 1uit_A Human discs large 5 pro 98.4 8.7E-08 3E-12 91.5 3.6 64 900-967 42-106 (117)
157 3khf_A Microtubule-associated 98.4 5E-07 1.7E-11 83.4 8.6 58 1009-1069 35-94 (99)
158 2dls_A PDZ-rhogef, RHO guanine 98.4 2.6E-07 9E-12 84.3 6.6 59 1009-1069 30-88 (93)
159 1v5q_A GRIP1 homolog, glutamat 98.4 2E-07 6.7E-12 89.7 6.0 61 1009-1070 46-109 (122)
160 1rgw_A ZAsp protein; PDZ, cyph 98.4 3E-07 1E-11 82.2 6.8 57 1009-1068 26-84 (85)
161 2o2t_A Multiple PDZ domain pro 98.4 1.3E-07 4.3E-12 90.3 4.5 61 296-358 48-113 (117)
162 2uzc_A Human pdlim5, PDZ and L 98.4 3.9E-07 1.3E-11 82.1 7.4 58 297-356 27-87 (88)
163 2awx_A Synapse associated prot 98.4 6E-07 2.1E-11 83.8 8.8 67 1008-1077 33-102 (105)
164 1gvz_A Kallikrein-1E2; antigen 98.4 9.1E-06 3.1E-10 87.3 19.4 155 47-221 13-207 (237)
165 2q3g_A PDZ and LIM domain prot 98.4 5.6E-07 1.9E-11 81.3 8.3 58 1009-1069 28-87 (89)
166 1x5q_A LAP4 protein; PDZ domai 98.4 3.7E-07 1.3E-11 86.0 7.3 60 1008-1070 46-107 (110)
167 3bpu_A Membrane-associated gua 98.4 8.6E-07 2.9E-11 79.8 9.4 59 296-356 26-87 (88)
168 3bpu_A Membrane-associated gua 98.4 4.8E-07 1.7E-11 81.5 7.7 59 1008-1069 27-87 (88)
169 4ag1_A Chymase; hydrolase-de n 98.4 1.3E-05 4.4E-10 85.4 20.3 181 46-242 12-222 (226)
170 2rcz_A Tight junction protein 98.4 6.8E-07 2.3E-11 78.9 8.4 57 1009-1068 22-81 (81)
171 2f5y_A Regulator of G-protein 98.4 7E-07 2.4E-11 81.0 8.6 60 297-358 24-86 (91)
172 1wf7_A Enigma homologue protei 98.4 1.5E-07 5.2E-12 87.6 4.2 66 1009-1077 30-97 (103)
173 3cp7_A Alkaline serine proteas 98.4 7.1E-06 2.4E-10 87.2 17.7 176 46-243 6-215 (218)
174 2yub_A LIMK-2, LIM domain kina 98.4 1.6E-07 5.5E-12 89.7 4.4 61 1008-1071 44-108 (118)
175 1a7s_A Heparin binding protein 98.4 2.6E-06 9E-11 90.8 14.3 175 47-245 13-219 (225)
176 2h2b_A Tight junction protein 98.4 6.1E-07 2.1E-11 84.0 8.1 61 296-357 38-99 (107)
177 1uez_A KIAA1526 protein; PDZ d 98.4 4.2E-07 1.4E-11 84.2 6.9 60 296-356 34-94 (101)
178 4e7n_A Snake-venom thrombin-li 98.4 1.3E-05 4.6E-10 85.9 19.9 187 46-245 12-230 (238)
179 1ueq_A Membrane associated gua 98.4 8E-07 2.7E-11 85.6 9.1 60 1008-1068 44-106 (123)
180 2q9v_A Membrane-associated gua 98.4 4.5E-07 1.5E-11 82.1 6.9 58 1009-1067 28-88 (90)
181 1v5l_A PDZ and LIM domain 3; a 98.4 2.2E-07 7.6E-12 86.5 4.8 59 1009-1070 30-90 (103)
182 2iwq_A Multiple PDZ domain pro 98.4 8.4E-07 2.9E-11 85.4 9.0 58 1008-1068 59-119 (123)
183 3cbz_A Dishevelled-2; PDZ doma 98.4 7E-07 2.4E-11 83.9 8.3 61 1008-1070 33-98 (108)
184 1d5g_A Human phosphatase HPTP1 98.4 7.3E-07 2.5E-11 81.7 8.2 59 1008-1069 33-94 (96)
185 3s9c_A Vipera russelli protein 98.4 1.3E-05 4.6E-10 85.7 19.5 184 46-246 12-227 (234)
186 2yub_A LIMK-2, LIM domain kina 98.4 1.7E-07 5.6E-12 89.6 3.9 62 296-359 43-109 (118)
187 1kwa_A Hcask/LIN-2 protein; PD 98.4 7.4E-07 2.5E-11 80.4 8.0 58 1009-1069 26-86 (88)
188 2vwr_A Ligand of NUMB protein 98.4 9.1E-07 3.1E-11 80.9 8.7 59 296-356 28-90 (95)
189 2awx_A Synapse associated prot 98.4 7.3E-07 2.5E-11 83.2 8.2 67 296-364 32-102 (105)
190 1vb7_A PDZ and LIM domain 2; P 98.4 3.4E-07 1.1E-11 83.7 5.8 60 296-357 29-91 (94)
191 3r68_A Na(+)/H(+) exchange reg 98.4 5.9E-07 2E-11 82.1 7.4 59 1009-1069 30-90 (95)
192 2fne_A Multiple PDZ domain pro 98.4 8.3E-07 2.8E-11 84.6 8.7 59 1009-1070 54-115 (117)
193 2o2t_A Multiple PDZ domain pro 98.4 1.8E-07 6.2E-12 89.2 4.0 61 1008-1071 49-113 (117)
194 1kwa_A Hcask/LIN-2 protein; PD 98.4 7.9E-07 2.7E-11 80.2 8.0 56 300-356 27-86 (88)
195 2d90_A PDZ domain containing p 98.4 2.2E-07 7.6E-12 86.3 4.4 58 1008-1068 30-89 (102)
196 1nf3_C PAR-6B; semi-CRIB motif 98.4 2.3E-07 7.8E-12 90.1 4.6 80 262-356 43-126 (128)
197 2opg_A Multiple PDZ domain pro 98.4 8.9E-07 3E-11 81.5 8.4 60 1009-1071 31-93 (98)
198 2q3g_A PDZ and LIM domain prot 98.4 6E-07 2.1E-11 81.0 7.1 58 297-356 27-87 (89)
199 1fuj_A PR3, myeloblastin; hydr 98.4 4.6E-06 1.6E-10 88.7 15.2 153 46-219 12-192 (221)
200 2hga_A Conserved protein MTH13 98.3 1E-06 3.4E-11 85.0 9.0 66 900-973 25-90 (125)
201 2ejy_A 55 kDa erythrocyte memb 98.3 8E-07 2.7E-11 81.6 7.9 52 1009-1062 37-91 (97)
202 2xw9_A Complement factor D; im 98.3 9.2E-06 3.2E-10 86.7 17.6 178 46-240 12-224 (228)
203 3rp2_A RAT MAST cell protease 98.3 1.4E-05 4.9E-10 84.9 19.0 180 46-241 12-221 (224)
204 2kjd_A Sodium/hydrogen exchang 98.3 4.1E-08 1.4E-12 95.3 -0.8 68 1009-1078 34-105 (128)
205 1uep_A Membrane associated gua 98.3 3.4E-07 1.2E-11 85.2 5.5 61 1008-1069 34-97 (103)
206 3khf_A Microtubule-associated 98.3 5.9E-07 2E-11 82.9 7.0 57 298-356 35-94 (99)
207 2e7k_A Maguk P55 subfamily mem 98.3 1.2E-06 4.3E-11 79.4 9.1 56 297-354 29-87 (91)
208 1wif_A RSGI RUH-020, riken cDN 98.3 4.4E-07 1.5E-11 87.4 6.3 58 1009-1067 50-110 (126)
209 1m5z_A GRIP, AMPA receptor int 98.3 1.5E-06 5E-11 78.8 9.5 58 296-354 31-90 (91)
210 1uez_A KIAA1526 protein; PDZ d 98.3 3.4E-07 1.2E-11 84.9 5.4 60 1008-1069 35-94 (101)
211 4amh_A Disks large homolog 1; 98.3 1.2E-06 4.1E-11 82.0 9.2 59 1008-1069 32-93 (106)
212 1wi2_A Riken cDNA 2700099C19; 98.3 6.3E-07 2.1E-11 83.6 7.2 58 1008-1069 41-100 (104)
213 1wi2_A Riken cDNA 2700099C19; 98.3 9.9E-07 3.4E-11 82.2 8.5 58 296-356 40-100 (104)
214 2f5y_A Regulator of G-protein 98.3 1.2E-06 4E-11 79.6 8.7 58 1009-1069 25-84 (91)
215 1mza_A Pro-granzyme K; apoptos 98.3 1.2E-05 4E-10 86.6 18.2 160 46-221 14-208 (240)
216 1g9o_A NHE-RF; PDZ domain, com 98.3 1.2E-06 4.2E-11 79.3 8.6 60 1008-1069 27-88 (91)
217 1n7e_A AMPA receptor interacti 98.3 1.4E-06 4.7E-11 80.1 8.9 59 297-357 30-92 (97)
218 2vsv_A Rhophilin-2; scaffold p 98.3 1.3E-06 4.3E-11 82.2 8.8 59 297-356 44-105 (109)
219 3ngh_A PDZ domain-containing p 98.3 4.4E-07 1.5E-11 84.9 5.7 60 296-357 25-87 (106)
220 1n7e_A AMPA receptor interacti 98.3 1.2E-06 4.3E-11 80.4 8.5 60 1008-1070 30-92 (97)
221 1wfg_A Regulating synaptic mem 98.3 1E-06 3.5E-11 85.8 8.3 109 952-1068 14-127 (131)
222 1b8q_A Protein (neuronal nitri 98.3 3.6E-07 1.2E-11 88.5 5.0 67 1009-1077 34-103 (127)
223 2vsv_A Rhophilin-2; scaffold p 98.3 9.2E-07 3.2E-11 83.1 7.7 55 1009-1064 45-101 (109)
224 2i1n_A Discs, large homolog 3; 98.3 1.3E-06 4.3E-11 81.1 8.6 60 1008-1070 34-96 (102)
225 3h7t_A Group 3 allergen smipp- 98.3 6.7E-06 2.3E-10 88.0 15.6 188 46-246 12-231 (235)
226 2kv8_A RGS12, regulator of G-p 98.3 4.4E-07 1.5E-11 80.8 5.2 57 296-354 22-81 (83)
227 2ego_A General receptor for ph 98.3 1.4E-06 4.6E-11 80.0 8.6 55 1009-1066 38-94 (96)
228 1v5l_A PDZ and LIM domain 3; a 98.3 3.5E-07 1.2E-11 85.1 4.7 59 297-357 29-90 (103)
229 3tsv_A Tight junction protein 98.3 6.6E-07 2.3E-11 86.3 6.7 60 297-357 51-114 (124)
230 2jre_A C60-1 PDZ domain peptid 98.3 1E-06 3.6E-11 82.6 8.0 60 1008-1070 44-106 (108)
231 2fe5_A Presynaptic protein SAP 98.3 1.5E-06 5.3E-11 79.1 8.9 58 1008-1068 33-93 (94)
232 1m5z_A GRIP, AMPA receptor int 98.3 1E-06 3.5E-11 79.9 7.6 57 1008-1067 32-90 (91)
233 2h2b_A Tight junction protein 98.3 8.9E-07 3.1E-11 82.9 7.4 61 1008-1070 39-99 (107)
234 2eeg_A PDZ and LIM domain prot 98.3 6.9E-07 2.4E-11 81.6 6.4 58 1009-1069 33-92 (94)
235 2jre_A C60-1 PDZ domain peptid 98.3 6E-07 2E-11 84.3 6.1 60 296-357 43-106 (108)
236 4amh_A Disks large homolog 1; 98.3 1.3E-06 4.3E-11 81.8 8.2 68 296-365 31-103 (106)
237 2zch_P Prostate-specific antig 98.3 1.9E-05 6.6E-10 84.8 18.8 166 67-241 23-231 (237)
238 3s69_A Thrombin-like enzyme de 98.3 1.1E-05 3.7E-10 86.4 16.8 184 46-246 12-227 (234)
239 1g9o_A NHE-RF; PDZ domain, com 98.3 1.4E-06 4.9E-11 78.9 8.3 60 296-356 26-88 (91)
240 2vwr_A Ligand of NUMB protein 98.3 1.6E-06 5.5E-11 79.3 8.7 58 1009-1069 30-90 (95)
241 2yt7_A Amyloid beta A4 precurs 98.3 1.1E-06 3.8E-11 81.4 7.6 57 1009-1066 38-97 (101)
242 1wi4_A Synip, syntaxin binding 98.3 1.3E-06 4.3E-11 82.3 8.1 60 1009-1069 42-106 (109)
243 1wf7_A Enigma homologue protei 98.3 2.4E-07 8.2E-12 86.2 3.1 65 297-363 29-96 (103)
244 3ngh_A PDZ domain-containing p 98.3 5.5E-07 1.9E-11 84.2 5.5 59 1008-1069 26-86 (106)
245 2la8_A Inactivation-NO-after-p 98.3 3E-07 1E-11 86.0 3.7 56 1009-1067 26-84 (106)
246 2aiq_A Protein C activator; sn 98.3 4.7E-06 1.6E-10 89.3 13.6 179 47-245 13-223 (231)
247 2ego_A General receptor for ph 98.3 1.9E-06 6.4E-11 79.0 8.9 57 296-354 36-95 (96)
248 2byg_A Channel associated prot 98.3 1.2E-06 4E-11 83.6 7.8 59 1008-1069 54-115 (117)
249 1rgw_A ZAsp protein; PDZ, cyph 98.3 7.4E-07 2.5E-11 79.6 6.0 58 297-356 25-85 (85)
250 1hj8_A Trypsin I; hydrolase, r 98.3 7.7E-06 2.6E-10 87.1 15.0 145 67-221 22-194 (222)
251 1lo6_A Kallikrein 6, HK6; seri 98.3 2E-05 6.8E-10 83.9 18.2 175 47-241 13-218 (223)
252 1q3o_A Shank1; PDZ, GKAP, pept 98.3 1.6E-06 5.5E-11 81.5 8.5 55 1009-1065 46-102 (109)
253 2dmz_A INAD-like protein; PDZ 98.3 1.3E-06 4.5E-11 84.8 8.1 60 1008-1070 46-108 (129)
254 1um1_A KIAA1849 protein, RSGI 98.3 3.9E-07 1.3E-11 85.9 4.2 68 1008-1078 36-106 (110)
255 2d90_A PDZ domain containing p 98.3 1.3E-06 4.5E-11 81.0 7.8 60 296-357 29-91 (102)
256 2kpk_A Membrane-associated gua 98.3 1.7E-06 5.8E-11 84.0 8.9 59 1009-1068 44-105 (129)
257 2eeg_A PDZ and LIM domain prot 98.3 7.9E-07 2.7E-11 81.2 6.1 59 296-356 31-92 (94)
258 1ton_A Tonin; hydrolase(serine 98.3 3.2E-05 1.1E-09 83.0 19.8 164 68-241 22-229 (235)
259 2djt_A Unnamed protein product 98.3 1.3E-06 4.5E-11 81.3 7.7 58 1009-1069 39-99 (104)
260 2kom_A Partitioning defective 98.3 1.6E-06 5.4E-11 83.2 8.4 60 296-356 57-121 (121)
261 4fgm_A Aminopeptidase N family 98.3 1.8E-06 6.1E-11 105.0 10.9 70 297-368 496-567 (597)
262 2edz_A PDZ domain-containing p 98.3 6.2E-07 2.1E-11 85.1 5.5 63 1008-1073 38-102 (114)
263 2i04_A Membrane-associated gua 98.3 1.7E-06 5.7E-11 77.4 8.0 57 296-353 24-85 (85)
264 2ejy_A 55 kDa erythrocyte memb 98.3 1.7E-06 5.8E-11 79.4 8.2 56 297-354 36-95 (97)
265 2jik_A Synaptojanin-2 binding 98.3 1.5E-06 5E-11 80.5 7.8 59 1008-1069 37-98 (101)
266 3r68_A Na(+)/H(+) exchange reg 98.3 1.8E-06 6.2E-11 78.8 8.3 59 297-357 29-90 (95)
267 1d5g_A Human phosphatase HPTP1 98.3 1.7E-06 5.9E-11 79.2 8.1 59 296-356 32-94 (96)
268 1npm_A Neuropsin; serine prote 98.3 1.7E-05 5.7E-10 84.6 17.0 145 67-221 23-198 (225)
269 4fgm_A Aminopeptidase N family 98.3 2.4E-06 8.2E-11 103.9 11.7 88 1008-1097 496-585 (597)
270 2i1n_A Discs, large homolog 3; 98.3 1.7E-06 5.8E-11 80.2 8.0 61 296-358 33-97 (102)
271 2fe5_A Presynaptic protein SAP 98.3 1.6E-06 5.3E-11 79.1 7.6 60 295-356 31-94 (94)
272 4i8h_A Cationic trypsin, beta- 98.3 6.3E-06 2.1E-10 87.7 13.5 165 67-241 22-218 (223)
273 1y7n_A Amyloid beta A4 precurs 98.3 9.5E-07 3.2E-11 80.0 6.0 53 301-354 34-89 (90)
274 2g5m_B Neurabin-2; spinophilin 98.3 4.8E-07 1.7E-11 85.7 4.2 66 1008-1076 35-103 (113)
275 2z7f_E Leukocyte elastase; ser 98.3 6.4E-06 2.2E-10 87.4 13.4 148 47-219 13-189 (218)
276 2koj_A Partitioning defective 98.2 2E-06 6.9E-11 81.0 8.4 61 296-357 38-103 (111)
277 1wha_A KIAA0147 protein, scrib 98.2 1.4E-06 4.8E-11 81.3 7.2 58 1008-1068 38-98 (105)
278 1fxy_A Coagulation factor XA-t 98.2 1.3E-05 4.3E-10 85.8 15.8 147 67-221 24-199 (228)
279 1ao5_A Glandular kallikrein-13 98.2 2.3E-05 8E-10 84.1 17.9 174 47-241 13-231 (237)
280 2byg_A Channel associated prot 98.2 1.7E-06 5.9E-11 82.4 7.9 59 296-356 53-115 (117)
281 2hlc_A Collagenase; serine pro 98.2 3.4E-05 1.2E-09 82.4 19.1 163 46-221 12-200 (230)
282 1va8_A Maguk P55 subfamily mem 98.2 2.3E-06 7.7E-11 81.1 8.7 59 1009-1070 49-110 (113)
283 1uep_A Membrane associated gua 98.2 1E-06 3.6E-11 81.9 6.1 60 296-356 33-97 (103)
284 2opg_A Multiple PDZ domain pro 98.2 1.8E-06 6.1E-11 79.4 7.6 60 297-358 30-93 (98)
285 2qg1_A Multiple PDZ domain pro 98.2 2.4E-06 8E-11 77.6 8.2 59 296-356 28-90 (92)
286 1whd_A RGS3, regulator of G-pr 98.2 1E-06 3.4E-11 81.6 5.8 58 1009-1069 37-96 (100)
287 2kv8_A RGS12, regulator of G-p 98.2 6.7E-07 2.3E-11 79.6 4.5 56 1009-1067 24-81 (83)
288 1v62_A KIAA1719 protein; struc 98.2 1.6E-06 5.5E-11 82.7 7.3 58 1009-1069 43-103 (117)
289 3fzz_A Granzyme C; hydrolase, 98.2 2.7E-05 9.4E-10 82.8 17.9 180 46-240 12-222 (227)
290 2fne_A Multiple PDZ domain pro 98.2 2.2E-06 7.4E-11 81.8 8.2 59 297-357 53-115 (117)
291 1cgh_A Cathepsin G; inflammati 98.2 3.3E-05 1.1E-09 82.2 18.5 157 47-221 13-199 (224)
292 2yt7_A Amyloid beta A4 precurs 98.2 3E-06 1E-10 78.5 8.9 56 298-354 38-98 (101)
293 2iwo_A Multiple PDZ domain pro 98.2 9.8E-07 3.4E-11 84.5 5.8 60 1009-1071 54-116 (120)
294 1y7n_A Amyloid beta A4 precurs 98.2 2.6E-06 9.1E-11 77.1 8.3 51 1011-1063 34-86 (90)
295 3cbz_A Dishevelled-2; PDZ doma 98.2 1.6E-06 5.4E-11 81.4 7.0 61 296-357 32-98 (108)
296 2e7k_A Maguk P55 subfamily mem 98.2 2E-06 6.7E-11 78.1 7.4 52 1009-1062 30-83 (91)
297 1si5_H Scatter factor, hepatoc 98.2 9.6E-05 3.3E-09 79.5 22.1 183 46-244 11-227 (240)
298 2jik_A Synaptojanin-2 binding 98.2 2E-06 7E-11 79.5 7.7 59 296-356 36-98 (101)
299 2qg1_A Multiple PDZ domain pro 98.2 2.3E-06 8E-11 77.6 7.9 58 1008-1068 29-89 (92)
300 3mfj_A Cationic trypsin; serin 98.2 1.4E-05 4.8E-10 85.1 15.2 164 67-240 22-217 (223)
301 1ujd_A KIAA0559 protein; PDZ d 98.2 2.1E-06 7.3E-11 81.8 7.9 59 1009-1070 50-111 (117)
302 1q7x_A PDZ2B domain of PTP-BAS 98.2 1.3E-06 4.3E-11 82.0 6.2 60 1008-1070 42-104 (108)
303 2kjd_A Sodium/hydrogen exchang 98.2 1.4E-06 4.9E-11 84.3 6.6 62 297-359 33-97 (128)
304 1uew_A Membrane associated gua 98.2 1.8E-06 6.1E-11 81.9 7.1 59 1009-1070 44-105 (114)
305 2bdg_A Kallikrein-4; serine pr 98.2 2.8E-05 9.7E-10 82.7 17.3 155 47-221 13-195 (223)
306 3qe1_A Sorting nexin-27, G pro 98.2 3.1E-06 1.1E-10 79.1 8.7 57 1009-1068 44-102 (107)
307 1wha_A KIAA0147 protein, scrib 98.2 2.1E-06 7.1E-11 80.1 7.4 59 296-356 37-99 (105)
308 1nf3_C PAR-6B; semi-CRIB motif 98.2 2.7E-06 9.1E-11 82.5 8.3 58 1009-1069 66-126 (128)
309 3axa_A Afadin, nectin-3, prote 98.2 3.3E-06 1.1E-10 78.8 8.7 59 1008-1069 38-99 (106)
310 1ueq_A Membrane associated gua 98.2 3E-06 1E-10 81.5 8.6 60 296-356 43-107 (123)
311 1v5q_A GRIP1 homolog, glutamat 98.2 1.5E-06 5.1E-11 83.5 6.5 59 297-356 45-108 (122)
312 3kzd_A TIAM-1, T-lymphoma inva 98.2 2.9E-06 9.8E-11 77.1 7.8 51 1008-1062 35-87 (94)
313 1azz_A Collagenase; complex (s 98.2 5.8E-06 2E-10 88.3 11.6 157 46-221 12-196 (226)
314 1mfg_A ERB-B2 interacting prot 98.2 3E-06 1E-10 77.4 8.0 59 295-355 33-93 (95)
315 1orf_A Granzyme A; hydrolase-h 98.2 5.6E-05 1.9E-09 81.0 19.2 158 46-221 12-202 (234)
316 2r4h_A Membrane-associated gua 98.2 3.9E-06 1.3E-10 79.3 8.9 59 1009-1070 50-111 (112)
317 2djt_A Unnamed protein product 98.2 1.8E-06 6.2E-11 80.3 6.5 60 296-357 37-100 (104)
318 3e17_A Tight junction protein 98.2 3.7E-06 1.3E-10 75.8 8.2 52 1009-1062 22-76 (88)
319 1iau_A Granzyme B; hydrolase-h 98.2 3.1E-05 1.1E-09 82.6 17.1 179 46-240 12-221 (227)
320 3gov_B MAsp-1; complement, ser 98.2 3.5E-05 1.2E-09 83.2 17.7 182 46-241 12-245 (251)
321 3h7o_A Group 3 allergen smipp- 98.2 5.9E-06 2E-10 88.1 11.3 183 46-241 11-223 (228)
322 3o46_A Maguk P55 subfamily mem 98.2 4E-06 1.4E-10 76.3 8.5 56 1009-1067 29-87 (93)
323 2psx_A Kallikrein-5; zinc inhi 98.2 4E-05 1.4E-09 81.7 17.8 156 46-220 12-196 (227)
324 3qik_A Phosphatidylinositol 3, 98.2 3.3E-06 1.1E-10 77.2 7.7 53 300-352 41-98 (101)
325 1va8_A Maguk P55 subfamily mem 98.2 4.7E-06 1.6E-10 78.8 9.2 59 297-357 48-110 (113)
326 1wg6_A Hypothetical protein (r 98.2 1.2E-06 4.1E-11 84.8 5.1 60 1009-1069 56-123 (127)
327 2dm8_A INAD-like protein; PDZ 98.2 1.8E-06 6E-11 82.2 6.1 60 1008-1070 43-105 (116)
328 2db5_A INAD-like protein; PDZ 98.2 3.2E-06 1.1E-10 81.9 8.0 58 1008-1068 54-115 (128)
329 2iwn_A Multiple PDZ domain pro 98.2 3.3E-06 1.1E-10 77.3 7.6 59 1008-1069 33-94 (97)
330 1x6d_A Interleukin-16; PDZ dom 98.2 2.4E-06 8.1E-11 81.7 6.9 61 1008-1070 42-105 (119)
331 2edp_A Fragment, shroom family 98.2 2.1E-06 7.1E-11 79.4 6.2 58 1009-1069 36-95 (100)
332 3i4w_A Disks large homolog 4; 98.2 3.4E-06 1.2E-10 78.4 7.7 59 297-356 35-96 (104)
333 2dmz_A INAD-like protein; PDZ 98.2 1.8E-06 6.2E-11 83.7 6.0 61 296-358 45-109 (129)
334 2yuy_A RHO GTPase activating p 98.2 8.9E-07 3.1E-11 85.6 3.8 59 1008-1069 61-121 (126)
335 3mhw_U Urokinase-type plasmino 98.2 5.3E-05 1.8E-09 81.7 18.3 166 46-221 12-220 (247)
336 3b76_A E3 ubiquitin-protein li 98.2 4.2E-06 1.4E-10 79.8 8.4 54 1008-1063 53-109 (118)
337 2r4h_A Membrane-associated gua 98.2 3.4E-06 1.2E-10 79.7 7.8 60 296-357 48-111 (112)
338 2z17_A Pleckstrin homology SEC 98.2 1.9E-06 6.5E-11 80.2 5.9 53 1008-1062 48-102 (104)
339 2d92_A INAD-like protein; PDZ 98.2 4E-06 1.4E-10 78.6 8.1 57 1008-1066 44-103 (108)
340 3axa_A Afadin, nectin-3, prote 98.2 3.6E-06 1.2E-10 78.6 7.8 60 296-357 37-100 (106)
341 2iwn_A Multiple PDZ domain pro 98.1 3.1E-06 1.1E-10 77.4 7.2 59 296-356 32-94 (97)
342 2q9v_A Membrane-associated gua 98.1 2.9E-06 1E-10 76.6 6.9 59 296-355 26-89 (90)
343 1q7x_A PDZ2B domain of PTP-BAS 98.1 2.6E-06 8.8E-11 79.9 6.7 60 296-357 41-104 (108)
344 2qxi_A Kallikrein-7; S1 pocket 98.1 3E-05 1E-09 82.6 15.9 143 68-220 24-193 (224)
345 2dlu_A INAD-like protein; PDZ 98.1 3.5E-06 1.2E-10 79.4 7.5 59 1009-1070 39-100 (111)
346 2qbw_A PDZ-fibronectin fusion 98.1 6E-06 2E-10 86.0 10.1 72 295-367 22-97 (195)
347 1mfg_A ERB-B2 interacting prot 98.1 5.5E-06 1.9E-10 75.6 8.6 56 1008-1067 35-92 (95)
348 2dkr_A LIN-7 homolog B; LIN-7B 98.1 4E-06 1.4E-10 76.2 7.6 57 1009-1068 31-90 (93)
349 2qkv_A Inactivation-NO-after-p 98.1 3.8E-06 1.3E-10 76.9 7.5 58 296-354 30-90 (96)
350 1vae_A Rhophilin 2, rhophilin, 98.1 1.8E-06 6.2E-11 81.4 5.4 55 1009-1064 37-93 (111)
351 1q3o_A Shank1; PDZ, GKAP, pept 98.1 4E-06 1.4E-10 78.8 7.7 56 297-354 45-103 (109)
352 1sgf_A 7S NGF, nerve growth fa 98.1 1.8E-05 6E-10 85.3 13.9 168 67-242 26-235 (240)
353 1ujv_A Membrane associated gua 98.1 4.1E-06 1.4E-10 76.8 7.6 59 1009-1070 33-93 (96)
354 1ujd_A KIAA0559 protein; PDZ d 98.1 3.1E-06 1.1E-10 80.6 7.0 59 297-357 49-111 (117)
355 1elt_A Elastase; serine protei 98.1 3.3E-05 1.1E-09 82.9 15.9 162 46-221 12-209 (236)
356 3hpk_A Protein interacting wit 98.1 1.5E-06 5.2E-11 83.8 4.8 60 1009-1070 46-108 (125)
357 1wif_A RSGI RUH-020, riken cDN 98.1 2.1E-06 7.3E-11 82.6 5.6 55 300-354 51-110 (126)
358 2zgc_A Granzyme M; serine prot 98.1 0.00016 5.3E-09 77.9 21.1 181 47-243 13-228 (240)
359 4e34_A Golgi-associated PDZ an 98.1 6.6E-06 2.3E-10 73.7 8.6 52 1009-1062 29-83 (87)
360 2gzv_A PRKCA-binding protein; 98.1 6.7E-06 2.3E-10 77.9 9.0 55 297-353 50-108 (114)
361 1spj_A Kallikrein 1; serine pr 98.1 3E-05 1E-09 83.3 15.3 154 47-220 13-207 (238)
362 3nfk_A Tyrosine-protein phosph 98.1 4.1E-06 1.4E-10 78.3 7.4 58 1009-1067 44-107 (107)
363 1wf8_A Neurabin-I; PDZ domain, 98.1 5.3E-06 1.8E-10 77.6 8.2 59 1008-1069 40-101 (107)
364 1lvm_A Catalytic domain of the 98.1 5.9E-05 2E-09 78.5 16.6 173 45-242 22-201 (229)
365 3o46_A Maguk P55 subfamily mem 98.1 4.8E-06 1.6E-10 75.8 7.6 59 296-356 27-89 (93)
366 1v62_A KIAA1719 protein; struc 98.1 2.8E-06 9.6E-11 81.0 6.3 57 299-357 44-104 (117)
367 1wfg_A Regulating synaptic mem 98.1 3.6E-06 1.2E-10 81.9 7.2 60 296-356 64-128 (131)
368 1um1_A KIAA1849 protein, RSGI 98.1 3.5E-06 1.2E-10 79.3 6.9 64 296-361 35-102 (110)
369 2la8_A Inactivation-NO-after-p 98.1 3.6E-06 1.2E-10 78.6 6.8 58 296-354 24-84 (106)
370 2eno_A Synaptojanin-2-binding 98.1 5.6E-06 1.9E-10 79.2 8.3 59 1008-1069 47-108 (120)
371 3i4w_A Disks large homolog 4; 98.1 7.1E-06 2.4E-10 76.2 8.7 57 1009-1068 36-95 (104)
372 1tp5_A Presynaptic density pro 98.1 4.5E-06 1.5E-10 79.7 7.5 59 297-356 38-99 (119)
373 3l4f_D SH3 and multiple ankyri 98.1 5.6E-06 1.9E-10 80.6 8.3 56 1009-1067 66-123 (132)
374 1qav_A Alpha-1 syntrophin (res 98.1 7.5E-06 2.6E-10 73.9 8.6 52 1009-1062 31-85 (90)
375 3k1r_A Harmonin; protein-prote 98.1 5.1E-06 1.7E-10 86.5 8.5 57 1009-1069 111-169 (192)
376 2qkv_A Inactivation-NO-after-p 98.1 3.6E-06 1.2E-10 77.1 6.5 56 1009-1067 32-90 (96)
377 2g5m_B Neurabin-2; spinophilin 98.1 3.5E-06 1.2E-10 79.7 6.6 62 296-359 34-99 (113)
378 3e17_A Tight junction protein 98.1 2.8E-06 9.4E-11 76.6 5.6 56 297-354 21-80 (88)
379 1eq9_A Chymotrypsin; FIRE ANT, 98.1 9.9E-06 3.4E-10 86.2 10.9 155 47-221 13-196 (222)
380 1wfv_A Membrane associated gua 98.1 2.2E-06 7.5E-11 79.6 5.0 58 1009-1069 37-97 (103)
381 1x5n_A Harmonin; PDZ domain, u 98.1 7.1E-07 2.4E-11 84.6 1.6 65 1008-1076 41-108 (114)
382 3qe1_A Sorting nexin-27, G pro 98.1 4.1E-06 1.4E-10 78.3 6.9 54 302-356 47-103 (107)
383 1wi4_A Synip, syntaxin binding 98.1 3.3E-06 1.1E-10 79.3 6.2 59 297-356 41-106 (109)
384 1euf_A Duodenase; serine prote 98.1 5.7E-05 2E-09 80.5 16.7 157 46-220 12-199 (227)
385 1m9u_A Earthworm fibrinolytic 98.1 3.2E-05 1.1E-09 83.2 14.8 160 47-219 13-210 (241)
386 3ncl_A Suppressor of tumorigen 98.1 3.3E-05 1.1E-09 83.0 14.8 160 46-221 12-214 (241)
387 2gzv_A PRKCA-binding protein; 98.1 7.7E-06 2.6E-10 77.5 8.6 52 1009-1062 51-105 (114)
388 2kpk_A Membrane-associated gua 98.1 5.4E-06 1.8E-10 80.4 7.7 59 297-356 43-106 (129)
389 3b76_A E3 ubiquitin-protein li 98.1 6.8E-06 2.3E-10 78.3 8.3 58 295-354 51-112 (118)
390 1aut_C Activated protein C; se 98.1 8E-05 2.7E-09 80.7 17.9 168 67-242 24-237 (250)
391 2daz_A INAD-like protein; PDZ 98.1 6.1E-06 2.1E-10 79.4 8.0 59 1009-1070 52-113 (124)
392 1vae_A Rhophilin 2, rhophilin, 98.1 3E-06 1E-10 79.9 5.6 56 297-353 36-94 (111)
393 2yuy_A RHO GTPase activating p 98.1 1.2E-06 4.2E-11 84.6 2.9 59 296-356 60-121 (126)
394 2dkr_A LIN-7 homolog B; LIN-7B 98.1 7.1E-06 2.4E-10 74.5 7.9 58 296-355 29-90 (93)
395 1wfv_A Membrane associated gua 98.1 2.2E-06 7.6E-11 79.5 4.5 58 297-356 36-97 (103)
396 2edv_A FERM and PDZ domain-con 98.1 3.6E-06 1.2E-10 77.2 5.8 58 296-355 30-89 (96)
397 2jde_A Urokinase-type plasmino 98.1 0.0001 3.5E-09 80.9 18.8 185 46-241 35-266 (276)
398 1uhp_A Hypothetical protein KI 98.1 9.1E-06 3.1E-10 76.0 8.7 58 1008-1068 41-101 (107)
399 2d92_A INAD-like protein; PDZ 98.1 4.6E-06 1.6E-10 78.2 6.7 58 296-354 43-104 (108)
400 1gvk_B Elastase 1, peptide inh 98.1 7.5E-05 2.6E-09 80.3 17.2 162 46-221 12-210 (240)
401 1wf8_A Neurabin-I; PDZ domain, 98.1 3.6E-06 1.2E-10 78.8 5.8 59 296-356 39-101 (107)
402 2oq5_A Transmembrane protease, 98.1 0.00011 3.9E-09 78.4 18.5 159 47-221 13-205 (232)
403 1r6j_A Syntenin 1; PDZ, membra 98.1 9.1E-06 3.1E-10 71.9 8.0 51 1011-1063 26-78 (82)
404 1tp5_A Presynaptic density pro 98.1 4.7E-06 1.6E-10 79.5 6.7 57 1009-1068 39-98 (119)
405 2any_A Kininogenin, plasma kal 98.1 7.5E-05 2.6E-09 80.3 17.0 184 46-242 12-234 (241)
406 2eno_A Synaptojanin-2-binding 98.1 4.9E-06 1.7E-10 79.6 6.7 59 296-356 46-108 (120)
407 1whd_A RGS3, regulator of G-pr 98.1 3.4E-06 1.2E-10 77.9 5.4 58 297-356 36-96 (100)
408 1x6d_A Interleukin-16; PDZ dom 98.1 4.2E-06 1.4E-10 79.9 6.2 62 296-358 41-106 (119)
409 2asu_B Hepatocyte growth facto 98.0 3.5E-05 1.2E-09 82.6 14.1 160 46-221 9-200 (234)
410 2db5_A INAD-like protein; PDZ 98.0 4.2E-06 1.4E-10 81.1 6.1 59 296-356 53-116 (128)
411 2dlu_A INAD-like protein; PDZ 98.0 5.9E-06 2E-10 77.8 6.9 59 297-357 38-100 (111)
412 1bru_P Elastase, PPE; serine p 98.0 0.00015 5E-09 78.1 18.9 162 46-221 12-211 (241)
413 2r0l_A Hepatocyte growth facto 98.0 0.00019 6.6E-09 77.4 19.9 179 47-242 13-237 (248)
414 1n7t_A 99-MER peptide of densi 98.0 6.9E-06 2.4E-10 76.2 7.2 58 296-355 42-101 (103)
415 1v6b_A Harmonin isoform A1; st 98.0 2.3E-06 8E-11 81.6 4.0 57 1009-1066 44-105 (118)
416 2ehr_A INAD-like protein; PDZ 98.0 4.4E-06 1.5E-10 79.5 5.9 55 1008-1064 50-107 (117)
417 2d8i_A T-cell lymphoma invasio 98.0 5.7E-06 2E-10 78.3 6.6 54 1009-1067 45-100 (114)
418 2dm8_A INAD-like protein; PDZ 98.0 4.8E-06 1.6E-10 79.1 6.1 59 297-357 43-105 (116)
419 1uju_A Scribble; PDZ domain, c 98.0 2.3E-06 7.7E-11 80.7 3.7 59 1008-1069 44-105 (111)
420 3beu_A Trypsin, SGT; beta shee 98.0 5.5E-05 1.9E-09 80.3 14.8 164 69-241 21-219 (224)
421 1arb_A Achromobacter protease 98.0 3E-05 1E-09 84.9 12.7 155 44-221 20-213 (268)
422 1i16_A Interleukin 16, LCF; cy 98.0 4.8E-06 1.6E-10 80.9 5.7 58 1009-1068 58-118 (130)
423 2qbw_A PDZ-fibronectin fusion 98.0 2E-05 6.7E-10 82.1 10.8 67 1008-1078 24-95 (195)
424 2eei_A PDZ domain-containing p 98.0 5.2E-06 1.8E-10 77.5 5.6 58 1008-1068 32-91 (106)
425 3kzd_A TIAM-1, T-lymphoma inva 98.0 1.2E-05 4.2E-10 72.9 7.8 53 296-352 34-89 (94)
426 3bg8_A Coagulation factor XIA 98.0 9.4E-05 3.2E-09 79.4 16.3 162 47-221 13-210 (238)
427 1uew_A Membrane associated gua 98.0 6.9E-06 2.4E-10 77.8 6.5 58 298-357 44-105 (114)
428 2iwo_A Multiple PDZ domain pro 98.0 4.2E-06 1.4E-10 80.1 4.9 61 900-966 53-117 (120)
429 2cs5_A Tyrosine-protein phosph 98.0 3.1E-06 1.1E-10 80.8 4.0 60 1009-1069 42-107 (119)
430 1x5n_A Harmonin; PDZ domain, u 98.0 1E-06 3.5E-11 83.6 0.6 60 296-358 40-103 (114)
431 1fc6_A Photosystem II D1 prote 98.0 2.4E-05 8.3E-10 90.5 12.2 78 1008-1087 99-181 (388)
432 1wg6_A Hypothetical protein (r 98.0 5.2E-06 1.8E-10 80.3 5.4 59 297-356 55-123 (127)
433 2dc2_A GOPC, golgi associated 98.0 1.6E-05 5.5E-10 73.8 8.6 53 1009-1063 36-91 (103)
434 3l4f_D SH3 and multiple ankyri 98.0 1.2E-05 4E-10 78.4 7.9 59 297-357 65-126 (132)
435 1fc6_A Photosystem II D1 prote 98.0 2.6E-05 9E-10 90.2 12.3 69 296-365 98-172 (388)
436 1n7t_A 99-MER peptide of densi 98.0 7.7E-06 2.6E-10 75.9 6.3 56 1008-1067 43-100 (103)
437 3k1r_A Harmonin; protein-prote 98.0 9.8E-06 3.4E-10 84.3 7.6 57 297-356 110-169 (192)
438 2f91_A Hepatopancreas trypsin; 98.0 5.9E-05 2E-09 81.0 14.0 164 47-221 13-211 (237)
439 2edv_A FERM and PDZ domain-con 98.0 5.5E-06 1.9E-10 75.9 5.0 56 1009-1068 32-89 (96)
440 3egg_C Spinophilin; PP1, serin 98.0 1.6E-05 5.4E-10 80.9 8.9 57 1008-1067 111-170 (170)
441 3hpk_A Protein interacting wit 98.0 2.4E-05 8.1E-10 75.4 9.7 55 297-353 45-103 (125)
442 2csj_A TJP2 protein; PDZ domai 98.0 5.7E-06 1.9E-10 78.8 5.2 59 296-356 45-105 (117)
443 1ufx_A KIAA1526 protein; PDZ d 98.0 8E-06 2.7E-10 75.9 5.9 59 1009-1068 33-97 (103)
444 1ym0_A Fibrinotic enzyme compo 98.0 0.00017 5.7E-09 77.4 17.3 182 47-241 13-233 (238)
445 1ddj_A Plasminogen; catalytic 97.9 0.00023 8E-09 76.8 18.5 161 46-221 29-219 (247)
446 3shw_A Tight junction protein 97.9 1.3E-05 4.3E-10 94.0 8.8 76 1009-1085 24-111 (468)
447 1ujv_A Membrane associated gua 97.9 1.6E-05 5.5E-10 72.8 7.7 57 297-356 32-92 (96)
448 2daz_A INAD-like protein; PDZ 97.9 7.4E-06 2.5E-10 78.9 5.7 59 297-357 51-113 (124)
449 3tsz_A Tight junction protein 97.9 1.4E-05 4.7E-10 92.3 8.9 76 1009-1085 32-119 (391)
450 3gyl_B Prostasin; ENAC, zymoge 97.9 0.00029 9.9E-09 76.5 19.1 98 47-157 13-131 (261)
451 2edp_A Fragment, shroom family 97.9 8.9E-06 3.1E-10 75.1 5.9 58 297-356 35-95 (100)
452 1rtf_B (TC)-T-PA, two chain ti 97.9 0.00033 1.1E-08 75.7 19.3 167 46-221 12-225 (252)
453 1zyo_A Serine protease; beta-b 97.9 7.9E-05 2.7E-09 76.7 13.4 154 649-838 26-185 (191)
454 3soe_A Membrane-associated gua 97.9 2.2E-05 7.6E-10 73.7 8.5 59 1009-1070 35-95 (113)
455 1uju_A Scribble; PDZ domain, c 97.9 3.5E-06 1.2E-10 79.4 2.9 60 295-356 42-105 (111)
456 4dgj_A Enteropeptidase catalyt 97.9 9E-05 3.1E-09 79.2 14.4 162 46-222 12-210 (235)
457 1qav_A Alpha-1 syntrophin (res 97.9 1.4E-05 4.9E-10 72.1 6.7 55 297-353 30-88 (90)
458 1t8o_A Chymotrypsin A; chymotr 97.9 0.00016 5.6E-09 77.9 16.3 159 46-222 27-218 (245)
459 1yc0_A Hepatocyte growth facto 97.9 0.00038 1.3E-08 76.8 19.5 180 46-242 47-272 (283)
460 2csj_A TJP2 protein; PDZ domai 97.9 5.5E-06 1.9E-10 78.9 3.8 59 1008-1070 46-106 (117)
461 2eei_A PDZ domain-containing p 97.9 9.8E-06 3.3E-10 75.6 5.4 59 296-356 31-92 (106)
462 2ehr_A INAD-like protein; PDZ 97.9 1.3E-05 4.5E-10 76.2 6.3 59 296-356 49-111 (117)
463 1uhp_A Hypothetical protein KI 97.9 1.8E-05 6.1E-10 74.0 7.0 59 296-356 40-102 (107)
464 1r6j_A Syntenin 1; PDZ, membra 97.9 1.4E-05 4.6E-10 70.8 5.8 50 303-353 28-80 (82)
465 2z17_A Pleckstrin homology SEC 97.9 1.2E-05 4.3E-10 74.6 5.7 54 296-351 47-103 (104)
466 1pyt_D TC, PCPA-TC, chymotryps 97.9 0.00028 9.4E-09 76.4 17.3 163 46-221 25-222 (251)
467 3egg_C Spinophilin; PP1, serin 97.9 2.3E-05 7.8E-10 79.7 8.1 57 296-354 110-170 (170)
468 3f1s_B Vitamin K-dependent pro 97.9 0.00011 3.6E-09 81.3 14.0 183 44-242 62-274 (283)
469 2krg_A Na(+)/H(+) exchange reg 97.9 1.4E-06 4.9E-11 92.0 -1.1 73 1009-1084 34-111 (216)
470 1v6b_A Harmonin isoform A1; st 97.9 8.3E-06 2.8E-10 77.8 4.2 57 298-354 43-106 (118)
471 2d8i_A T-cell lymphoma invasio 97.9 1.4E-05 4.8E-10 75.7 5.7 55 297-355 44-101 (114)
472 3nfk_A Tyrosine-protein phosph 97.8 1.7E-05 5.7E-10 74.2 6.1 57 297-354 43-107 (107)
473 1um7_A Synapse-associated prot 97.8 1.1E-05 3.7E-10 76.2 4.8 58 1008-1068 39-99 (113)
474 1i16_A Interleukin 16, LCF; cy 97.8 1.8E-05 6.2E-10 76.8 6.5 60 296-356 56-119 (130)
475 3gge_A PDZ domain-containing p 97.8 3.9E-05 1.3E-09 69.4 8.1 57 1009-1065 29-88 (95)
476 1fon_A Procarboxypeptidase A-S 97.8 4.5E-05 1.6E-09 82.0 9.8 161 47-221 11-210 (240)
477 3tsz_A Tight junction protein 97.8 2.9E-05 9.8E-10 89.7 8.4 61 296-357 30-94 (391)
478 2jkh_A Activated factor XA hea 97.8 9.8E-05 3.3E-09 79.4 12.1 169 67-243 24-232 (241)
479 1ufx_A KIAA1526 protein; PDZ d 97.8 1.4E-05 4.9E-10 74.1 4.7 56 301-356 35-98 (103)
480 3h5c_B Vitamin K-dependent pro 97.8 0.00011 3.9E-09 82.5 13.1 100 46-157 105-222 (317)
481 2cs5_A Tyrosine-protein phosph 97.8 3.3E-05 1.1E-09 73.7 7.3 59 297-356 41-107 (119)
482 2vnt_A Urokinase-type plasmino 97.8 0.0011 3.7E-08 72.6 20.7 188 46-242 35-267 (276)
483 3tvj_B Mannan-binding lectin s 97.8 0.00051 1.7E-08 73.5 17.5 90 67-158 21-132 (242)
484 3mmg_A Nuclear inclusion prote 97.8 0.00047 1.6E-08 72.2 16.2 174 625-842 14-194 (241)
485 2olg_A Pro-phenoloxidase activ 97.8 0.00065 2.2E-08 74.6 18.3 165 46-221 34-251 (278)
486 4e34_A Golgi-associated PDZ an 97.7 6.7E-05 2.3E-09 67.1 8.1 54 399-454 28-86 (87)
487 3soe_A Membrane-associated gua 97.7 6.1E-05 2.1E-09 70.7 7.8 60 297-359 34-97 (113)
488 2krg_A Na(+)/H(+) exchange reg 97.7 1.2E-05 4E-10 85.0 3.2 60 297-358 33-96 (216)
489 1fiw_A Beta-acrosin heavy chai 97.7 0.00066 2.2E-08 75.2 17.6 164 47-221 13-223 (290)
490 2bz6_H Blood coagulation facto 97.7 0.00041 1.4E-08 75.1 15.6 185 47-246 13-242 (254)
491 3rm2_H Thrombin heavy chain; s 97.7 0.00063 2.1E-08 73.6 16.9 101 46-157 12-143 (259)
492 1um7_A Synapse-associated prot 97.7 1.7E-05 5.8E-10 74.8 3.7 58 297-356 39-100 (113)
493 2f9n_A Alpha I tryptase; serin 97.7 0.00021 7.2E-09 77.0 12.5 102 46-157 12-132 (245)
494 2qy0_B Complement C1R subcompo 97.7 0.00019 6.5E-09 77.1 12.1 168 68-241 22-236 (242)
495 2wph_S Coagulation factor IXA 97.7 0.00019 6.5E-09 76.8 12.0 167 67-240 23-229 (235)
496 2dc2_A GOPC, golgi associated 97.7 7.7E-05 2.6E-09 69.1 7.6 59 297-357 35-97 (103)
497 1z8g_A Serine protease hepsin; 97.7 0.00099 3.4E-08 76.5 18.3 168 67-241 140-357 (372)
498 3gge_A PDZ domain-containing p 97.7 0.00026 8.8E-09 64.0 10.4 57 400-456 29-90 (95)
499 2lob_A Golgi-associated PDZ an 96.8 8.9E-06 3E-10 76.8 0.0 52 1009-1062 54-108 (112)
500 4dur_A Plasminogen, serine pro 97.6 0.0015 5.2E-08 81.7 19.8 181 46-240 573-785 (791)
No 1
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=100.00 E-value=1.2e-52 Score=495.84 Aligned_cols=383 Identities=19% Similarity=0.310 Sum_probs=318.8
Q ss_pred CcCCcchHHHHHHHhCCceEEEEEEeee------------ccCC------CCCCccEEEEEEEeCCCcEEEeCccccCCC
Q 001276 31 NVATADDWRKALNKVVPAVVVLRTTACR------------AFDT------EAAGASYATGFVVDKRRGIILTNRHVVKPG 92 (1109)
Q Consensus 31 ~~~~~~~~~~~~~~~~~sVV~I~~~~~~------------~~d~------~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~ 92 (1109)
.++..++|.++++++.+|||.|.+.... .|+. .....+.||||+|++++||||||+|||. +
T Consensus 8 ~~~~~~~~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfii~~~~G~IlTn~Hvv~-~ 86 (436)
T 4a8c_A 8 DQAPLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN-Q 86 (436)
T ss_pred cccCCCCHHHHHHhhCCcEEEEEEEEeecccccCcchhhhhcccccccccCCcCceEEEEEEEECCCCEEEECHHHhC-C
Confidence 4456679999999999999999987532 1221 2234689999999984499999999999 5
Q ss_pred CeEEEEEecCCeEEEEEEEEEcCCCcEEEEEEc-CCCcccccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEEEe
Q 001276 93 PVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYD-PSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARL 171 (1109)
Q Consensus 93 ~~~~~v~~~~~~~~~a~vv~~d~~~DlAlLk~~-~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~ 171 (1109)
+..+.|++.|++.++|++++.|+.+||||||++ +..++++.+.. +..+++|++|+++|||++...+++.|+|+++
T Consensus 87 a~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv~~~~~l~~~~l~~----s~~~~~G~~v~aiG~P~g~~~~vt~G~vs~~ 162 (436)
T 4a8c_A 87 AQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIAD----SDKLRVGDFAVAVGNPFGLGQTATSGIVSAL 162 (436)
T ss_pred CCEEEEEeCCCCEEEEEEEEEcCCCCEEEEEecCCCCCceEeccC----cccCCCCCEEEEEEcCCCCCccEEEEEEeee
Confidence 678999999999999999999999999999995 44555555554 6789999999999999999999999999999
Q ss_pred cCCCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCCcEEEEeccccCC----CCCccccchHHHHHHHHHHHhcCC
Q 001276 172 DRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQERRD 247 (1109)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falP~~~i~~~l~~l~~~~~ 247 (1109)
.+.. +....+. .+||+++++++|+|||||||.+|+||||+++.... .+++|+||++.+++++++|.+++
T Consensus 163 ~r~~--~~~~~~~----~~iq~da~i~~GnSGGPl~n~~G~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g- 235 (436)
T 4a8c_A 163 GRSG--LNLEGLE----NFIQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG- 235 (436)
T ss_pred cccc--cCCCCcc----CEEEEcCccCCCCCcCcccCCCCEEEEEEeeeccCCCCceeEEEEEehHHHHHHHHHHHhcc-
Confidence 8862 2222333 36999999999999999999999999999876543 46899999999999999999988
Q ss_pred cccccccccccCCCccceEEEEcChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECC
Q 001276 248 CNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNG 326 (1109)
Q Consensus 248 ~~~~~~~~~~v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG 326 (1109)
.+.|||||+.++.++.+.++.|||+ ...|++| ..|.++|||++ ||++||+|++|||
T Consensus 236 ---------~v~r~~lGv~~~~~~~~~a~~~gl~-------------~~~G~~V-~~V~~~spA~~aGL~~GD~I~~vnG 292 (436)
T 4a8c_A 236 ---------EIKRGLLGIKGTEMSADIAKAFNLD-------------VQRGAFV-SEVLPGSGSAKAGVKAGDIITSLNG 292 (436)
T ss_pred ---------ccccccCceEecccCHHHHHHhCCC-------------CCcceEE-EEECCCChHHHCCCCCCCEEEEECC
Confidence 7899999999999999999999997 5688887 69999999999 9999999999999
Q ss_pred EEeCChhHHHHHHh-cCCCCeEEEEEEECCEEEEEEEEeecCCCCCCC---ccccccceEEecCCHHHhhccCCCCCeEE
Q 001276 327 EVITQFLKLETLLD-DGVDKNIELLIERGGISMTVNLVVQDLHSITPD---YFLEVSGAVIHPLSYQQARNFRFPCGLVY 402 (1109)
Q Consensus 327 ~~v~~~~~l~~~l~-~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~---~~~~~~G~~~~~l~~~~~~~~~~~~~gv~ 402 (1109)
++|.+|.++...+. ..+|+.++|+|.|+|+.+++++++..++..... ..+.+.|..+.+... . -...|++
T Consensus 293 ~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~~gl~~~~~~~~~~---~---~~~~gv~ 366 (436)
T 4a8c_A 293 KPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQL---K---DGGKGIK 366 (436)
T ss_pred EECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCcccccccccccCceeeecccccc---c---CCCCCEE
Confidence 99999999998885 468999999999999999999999887643221 112233333332211 0 0125888
Q ss_pred EEc--CCChhHHcCCCCCCEEEEcCCeecCCHHHHHHHHHhcCCCCeEeEEEEeec
Q 001276 403 VAE--PGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEYSSYT 456 (1109)
Q Consensus 403 v~~--pg~~a~~aGl~~GD~I~~Vng~~v~~l~~~~~~i~~~~~g~~v~l~~~~~~ 456 (1109)
|.+ ++|+|+++||++||+|++|||+++.+|++|.++++.. ++.+.|++.|-+
T Consensus 367 V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~l~~~--~~~v~l~v~R~g 420 (436)
T 4a8c_A 367 IDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAK--PAIIALQIVRGN 420 (436)
T ss_pred EEEeCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhC--CCeEEEEEEECC
Confidence 884 8999999999999999999999999999999999983 348889888865
No 2
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=100.00 E-value=2.4e-52 Score=493.79 Aligned_cols=383 Identities=20% Similarity=0.320 Sum_probs=314.7
Q ss_pred cchHHHHHHHhCCceEEEEEEeee------------------ccCC--------CCCCccEEEEEEEeCCCcEEEeCccc
Q 001276 35 ADDWRKALNKVVPAVVVLRTTACR------------------AFDT--------EAAGASYATGFVVDKRRGIILTNRHV 88 (1109)
Q Consensus 35 ~~~~~~~~~~~~~sVV~I~~~~~~------------------~~d~--------~~~~~~~GSGfvV~~~~G~IlTn~HV 88 (1109)
..++.++++++.||||.|.+.... .|.. .....+.||||+|++++||||||+||
T Consensus 18 ~~~~~~~~~~~~pavv~i~~~~~~~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTn~HV 97 (451)
T 3pv2_A 18 MPSMAPVLKNIMPAIVNVAVQGYLPNDVTPPGSAGNDEENQPNNRPPQSRMPEKGRKFESIGSGVIIDPNNGVIITNDHV 97 (451)
T ss_dssp CCCSHHHHHHHGGGEEEEEEEEECCC-----------------------------CEEEEEEEEEEEETTTTEEEECHHH
T ss_pred CCCHHHHHHHhCCcEEEEEEEEeecccCCCccccccchhHHhhcccccccccccCcccceeEEEEEEECCCCEEEEChHH
Confidence 347999999999999999987521 1111 11235789999999856999999999
Q ss_pred cCCCCeEEEEEecCCeEEEEEEEEEcCCCcEEEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCC-----CeE
Q 001276 89 VKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK-----VSI 163 (1109)
Q Consensus 89 v~~~~~~~~v~~~~~~~~~a~vv~~d~~~DlAlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~-----~si 163 (1109)
|. ++..+.|++.|++.++|++++.|+.+||||||+++..++++.+.. +..+++|++|+++|||+|.. .++
T Consensus 98 v~-~a~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~~~~l~~~~l~~----s~~~~~G~~V~aiG~P~G~~~~~~~~~v 172 (451)
T 3pv2_A 98 IR-NASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKNLKSLVIGD----SDKLEVGDFVVAIGNPFGLNSFGNSQSA 172 (451)
T ss_dssp HT-TEEEEEEECTTSCEEECEEEEEETTTTEEEEECCCSSCCCCCBCC----GGGCCTTCEEEEEECCCCC-----CCEE
T ss_pred hC-CCCEEEEEEcCCCEEEEEEEecCcCCcEEEEEEcCcCCceeEecC----cccCCCCCEEEEEECCCCccccccCCce
Confidence 99 678899999999999999999999999999999887666666654 67899999999999999988 899
Q ss_pred EEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCCcEEEEeccccC----CCCCccccchHHHHHHH
Q 001276 164 LAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS----SSASAFFLPLERVVRAL 239 (1109)
Q Consensus 164 ~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~----~~~~~falP~~~i~~~l 239 (1109)
+.|+|+++.|.. +....+.+ +||+++++++|||||||||.+|+||||+++... ..+++|+||++.+++++
T Consensus 173 t~Givs~~~r~~--~~~~~~~~----~iqtda~i~~GnSGGPl~n~~G~VIGI~t~~~~~~~~~~g~gfaIP~~~~~~~~ 246 (451)
T 3pv2_A 173 TFGIVSALKRSD--LNIEGVEN----FIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVA 246 (451)
T ss_dssp EEEEEEEEC------------C----CEEESSCCCGGGTTSEEEETTCCEEEEEECCC------CCCEEEEEHHHHHHHH
T ss_pred eEEEEeeccccc--cCCCCcce----EEEEecccCCCCCcCcccCCCCeEEEEEeEeecCCCCccceeeeehhHHHHHHH
Confidence 999999998862 22223333 599999999999999999999999999987654 25789999999999999
Q ss_pred HHHHhcCCcccccccccccCCCccceEEEEcChhHHHHcCCChhHHHhhhcCCCCCC-CceEEEEEecCCCcccc-CCCC
Q 001276 240 RFLQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGE-TGLLVVDSVVPGGPAHL-RLEP 317 (1109)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~-~G~lVv~~V~~~spA~~-gL~~ 317 (1109)
++|++++ .+.|||||+.++.++.+.++.|||+ .. .|++| ..|.++|||++ ||++
T Consensus 247 ~~l~~~g----------~v~r~~lGv~~~~~~~~~a~~~gl~-------------~~~~G~~V-~~V~~~spA~~aGL~~ 302 (451)
T 3pv2_A 247 QQIIKFG----------SIHRGLMGIFVQHLTPELAQAMGYP-------------EDFQGALV-SQVNPNSPAELAGLKA 302 (451)
T ss_dssp HHHHHHS----------SCCCCBCCEEEEECCHHHHHHTTSC-------------TTCCCEEE-EEECTTSHHHHHTCCT
T ss_pred HHHHhcC----------CcccccccceEEeccHHHHHhcCCC-------------cCCceEEE-EecCCCChHHHcCCCC
Confidence 9999988 8899999999999999999999998 34 78887 69999999999 9999
Q ss_pred CCEEEEECCEEeCChhHHHHHHhc-CCCCeEEEEEEECCEEEEEEEEeecCCCCCC---CccccccceEEecCCHHHhhc
Q 001276 318 GDVLVRVNGEVITQFLKLETLLDD-GVDKNIELLIERGGISMTVNLVVQDLHSITP---DYFLEVSGAVIHPLSYQQARN 393 (1109)
Q Consensus 318 GD~Il~VnG~~v~~~~~l~~~l~~-~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~---~~~~~~~G~~~~~l~~~~~~~ 393 (1109)
||+|++|||++|.++.++...+.. .+|++++|+|.|+|+.+++++++..++.... .......|+.+.++.++....
T Consensus 303 GDvI~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~ 382 (451)
T 3pv2_A 303 GDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPH 382 (451)
T ss_dssp TCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECBCHHHHHHHHHHHSTTTTTEEEEEEEEECTTS
T ss_pred CCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEccCCccccccccccccccccccccCChhHhcc
Confidence 999999999999999999998864 7899999999999999999999876542110 111245678777665432111
Q ss_pred cCCCCCeEEEE--cCCChhHHcCCCCCCEEEEcCCeecCCHHHHHHHHHhcCCCCeEeEEEEeec
Q 001276 394 FRFPCGLVYVA--EPGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEYSSYT 456 (1109)
Q Consensus 394 ~~~~~~gv~v~--~pg~~a~~aGl~~GD~I~~Vng~~v~~l~~~~~~i~~~~~g~~v~l~~~~~~ 456 (1109)
. ...|++|. .++|+|+++||++||+|++|||+++.++++|.++++. .++.+.|++.|-+
T Consensus 383 -~-~~~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~~~~~~~l~~--~~~~v~l~v~R~g 443 (451)
T 3pv2_A 383 -G-NVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQE--KKKELLVQVLRGP 443 (451)
T ss_dssp -C-EEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHTTS--SCSCEEEEEEETT
T ss_pred -c-CCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHhc--CCCeEEEEEEECC
Confidence 0 12588887 4899999999999999999999999999999999987 5678888887754
No 3
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=100.00 E-value=3.1e-51 Score=486.23 Aligned_cols=374 Identities=18% Similarity=0.210 Sum_probs=309.7
Q ss_pred HhCCceEEEEEEeee-----ccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec-CCeEEEEEEEEEcCCC
Q 001276 44 KVVPAVVVLRTTACR-----AFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV-NREEIPVYPIYRDPVH 117 (1109)
Q Consensus 44 ~~~~sVV~I~~~~~~-----~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~-~~~~~~a~vv~~d~~~ 117 (1109)
.+.+|||+|.+.... +|.......+.||||+|+ +||||||+|||. ++..+.|++. |+++++|++++.|+.+
T Consensus 45 ~~~~sVV~I~~~~~~~~~~~Pw~~~~~~~s~GSGfiI~--dG~IlTN~HVV~-~a~~i~V~~~~dg~~~~A~vv~~D~~~ 121 (539)
T 4fln_A 45 SFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIG--DGKLLTNAHCVE-HDTQVKVKRRGDDRKYVAKVLVRGVDC 121 (539)
T ss_dssp HHHTTEEEEEEEECCBCSSSTTSBCCCEEEEEEEEEEE--TTEEEECGGGGT-TEEEEEEECTTCCCCEEEEEEEEETTT
T ss_pred ccCCCeEEEEEEecCCCCCCccccCCccceEEEEEEEE--CCEEEEChHHcC-CCCeEEEEEccCCEEEEEEEEEECCCC
Confidence 456899999988643 355566778999999998 699999999999 6778999885 8999999999999999
Q ss_pred cEEEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCC-CeEEEEEEEEecCCCCCCCCCCccccceeeEEEeec
Q 001276 118 DFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK-VSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASG 196 (1109)
Q Consensus 118 DlAlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~-~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~ 196 (1109)
||||||++...++. .+.++.+. +.+++|++|+++|||+|.. .+++.|+||++++.....+ .....+||+|++
T Consensus 122 DLAvLkv~~~~~~~-~~~pl~~g-~~~~vGd~V~aiG~P~g~~~~tvT~GIVSa~~r~~~~~~-----~~~~~~IQtDAa 194 (539)
T 4fln_A 122 DIALLSVESEDFWK-GAEPLRLG-HLPRLQDSVTVVGYPLGGDTISVTKGVVSRIEVTSYAHG-----SSDLLGIQIDAA 194 (539)
T ss_dssp TEEEEEECCSSSST-TCCCCCBC-CCCCTTCEEEEEECCSSSCCCEEEEEEEEEEEEEECTTS-----CCEEEEEEESSC
T ss_pred CEEEEEEeCCcCCc-CCceeecC-CcCcCCCeEEEEEcCCCCCCCcEEeEEECcccccccCCC-----CcceeEEEEEeE
Confidence 99999998765432 22333333 4568999999999999875 5999999999988643221 112356999999
Q ss_pred cCCCCCCCceecCCCcEEEEeccccC---CCCCccccchHHHHHHHHHHHhcCCccccccccccc-CCCccceEEEEc-C
Q 001276 197 TKGGSSGSPVIDWQGRAVALNAGSKS---SSASAFFLPLERVVRALRFLQERRDCNIHNWEAVSI-PRGTLQVTFVHK-G 271 (1109)
Q Consensus 197 ~~~G~SGgPv~n~~G~vVGi~~~~~~---~~~~~falP~~~i~~~l~~l~~~~~~~~~~~~~~~v-~rg~lg~~~~~~-~ 271 (1109)
+++|||||||||.+|+||||+++... ..+++||||++.+++++++|.+.+ .+ .|||||+.++.. .
T Consensus 195 InpGnSGGPLvn~~GeVIGIntai~~~~~~~gigfAIP~~~v~~vl~~l~~~G----------~~~~r~~LGv~~~~~~~ 264 (539)
T 4fln_A 195 INPGNSGGPAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYERNG----------KYTGYPCLGVLLQKLEN 264 (539)
T ss_dssp CCTTTTTSEEECSSSCEEEEECCCC-----CCCEEEEEHHHHHHHHHHHHTTT----------SCCCCCBCCEEEEECCC
T ss_pred ecCCCccchhccCCCcEEEEEEEEecCCCCCcceecccHHHHHHHHHHHHHcC----------eEEeeeecceEEEecCC
Confidence 99999999999999999999987653 367899999999999999998776 44 499999999986 5
Q ss_pred hhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhH----------HHHHH-h
Q 001276 272 FDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLK----------LETLL-D 340 (1109)
Q Consensus 272 ~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~----------l~~~l-~ 340 (1109)
...++.|||+ ...|++| ..|.|+|||+++|++||+|++|||++|.+..+ +..++ .
T Consensus 265 ~~~~~~~~l~-------------~~~Gv~V-~~V~~~spA~~al~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~ 330 (539)
T 4fln_A 265 PALRECLKVP-------------TNEGVLV-RRVEPTSDASKVLKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQ 330 (539)
T ss_dssp HHHHHHHTCS-------------SSBCEEE-EEECTTSGGGGTCCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHT
T ss_pred HHHHHhcCCC-------------CcCceee-ecccCCChHHhCccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHc
Confidence 6667779997 5689998 69999999988999999999999999976543 56666 5
Q ss_pred cCCCCeEEEEEEECCEEEEEEEEeecCCCCCC-------CccccccceEEecCCHHHhhccCCC----------------
Q 001276 341 DGVDKNIELLIERGGISMTVNLVVQDLHSITP-------DYFLEVSGAVIHPLSYQQARNFRFP---------------- 397 (1109)
Q Consensus 341 ~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~-------~~~~~~~G~~~~~l~~~~~~~~~~~---------------- 397 (1109)
..+|++++|+|.|+|+++++++++...+...+ .++..++|+.|+++++++.+.++..
T Consensus 331 ~~~Gd~v~l~v~R~Gk~~~v~Vtl~~~~~~~~~~~~~~~p~~~~~~Gl~f~~Lt~~~~~~~~~~~~~~~l~~~~~~~~~~ 410 (539)
T 4fln_A 331 KFAGDIAEIGIIRAGEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLIEEECEDTIGLKLLTKARYSVAR 410 (539)
T ss_dssp SCTTCEEEEEEEETTEEEEEEEECBCCCCSSCSCTTSSCCCCCCSTTEEEEECCHHHHTTSCSSSSCHHHHHHHHHCCCS
T ss_pred CCCCCEEEEEEEECCEEEEEEEEEccCccccccccccCCCccccccceEEeeCCHHHHHhhcccccCceeeehhhhhhhc
Confidence 58999999999999999999999998765433 3567889999999999877654432
Q ss_pred ---CCeEEEEc--CCChhHHcCCCCCCEEEEcCCeecCCHHHHHHHHHhcCCCCeEeEEE
Q 001276 398 ---CGLVYVAE--PGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEY 452 (1109)
Q Consensus 398 ---~~gv~v~~--pg~~a~~aGl~~GD~I~~Vng~~v~~l~~~~~~i~~~~~g~~v~l~~ 452 (1109)
.+||+++. |++++..+|+++||+|++|||++|.|+++|.++|++.+ ++.+.|++
T Consensus 411 ~~~~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~~l~~~l~~~k-~~~l~~~~ 469 (539)
T 4fln_A 411 FRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHHLAHLIDMCK-DKYLVFEF 469 (539)
T ss_dssp STTCCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSHHHHHHHHHTCC-SSEEEEEE
T ss_pred cCCceEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCHHHHHHHHHHcC-CCeEEEEE
Confidence 24788874 99999999999999999999999999999999999964 56666655
No 4
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=100.00 E-value=1.1e-48 Score=461.94 Aligned_cols=398 Identities=19% Similarity=0.262 Sum_probs=315.2
Q ss_pred ccccccccccEEEEEEEcCccc----------ccCC------cccceeeEEEEEEEeeCCceEEEEeCceecCCCCcEEE
Q 001276 619 SFAESVIEPTLVMFEVHVPPSC----------MIDG------VHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVML 682 (1109)
Q Consensus 619 ~~~~~~~~~SvV~V~~~~~~~~----------~~dg------~~~~~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V 682 (1109)
..+++++.+|||.|.+...... .+.. .....+.||||||+. ++|||||| +||+.++.++.|
T Consensus 16 ~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfii~~--~~G~IlTn-~Hvv~~a~~i~V 92 (436)
T 4a8c_A 16 APMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINA--SKGYVLTN-NHVINQAQKISI 92 (436)
T ss_pred HHHHHhhCCcEEEEEEEEeecccccCcchhhhhcccccccccCCcCceEEEEEEEEC--CCCEEEEC-HHHhCCCCEEEE
Confidence 3488999999999988653210 1111 112357899999992 34999999 567788899999
Q ss_pred EeecCCeEEeEEEEEeeCCCcEEEEEEC-CCCCCcccccceeceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccc
Q 001276 683 SFAAFPIEIPGEVVFLHPVHNFALIAYD-PSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPC 761 (1109)
Q Consensus 683 ~~~d~~~~~~a~vv~~dp~~dlAilk~d-~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~ 761 (1109)
++.+ ++.++|++++.|+.+||||||++ +..+++ ++|+++..++.||+|+++|||+++....+.+.|+
T Consensus 93 ~~~d-g~~~~a~vv~~d~~~DlAllkv~~~~~l~~--------~~l~~s~~~~~G~~v~aiG~P~g~~~~vt~G~vs--- 160 (436)
T 4a8c_A 93 QLND-GREFDAKLIGSDDQSDIALLQIQNPSKLTQ--------IAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVS--- 160 (436)
T ss_pred EeCC-CCEEEEEEEEEcCCCCEEEEEecCCCCCce--------EeccCcccCCCCCEEEEEEcCCCCCccEEEEEEe---
Confidence 9998 99999999999999999999994 555655 8999887899999999999999986655555554
Q ss_pred cccccCCCCCCccc-ccceeEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHH
Q 001276 762 AALNISSADCPRYR-AMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVL 839 (1109)
Q Consensus 762 ~~~~i~~~~~~~y~-~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l 839 (1109)
+..+..+. ....++||+|+++++ +|||||+|.+|+||||+++.... +....++.||||++.+++++
T Consensus 161 ------~~~r~~~~~~~~~~~iq~da~i~~GnSGGPl~n~~G~vvGI~~~~~~~------~~~~~g~gfaIP~~~~~~~~ 228 (436)
T 4a8c_A 161 ------ALGRSGLNLEGLENFIQTDASINRGNAGGALLNLNGELIGINTAILAP------GGGSVGIGFAIPSNMARTLA 228 (436)
T ss_pred ------eecccccCCCCccCEEEEcCccCCCCCcCcccCCCCEEEEEEeeeccC------CCCceeEEEEEehHHHHHHH
Confidence 32222111 123478999999966 79999999999999999886543 12334556899999999999
Q ss_pred HHHHcCCCCCcccccccccCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhhh-cc
Q 001276 840 DKIISGASGPSLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LE 918 (1109)
Q Consensus 840 ~~l~~~~~~~~~~~~~v~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~spA~~a-L~ 918 (1109)
++|+++++ +.|+ |||+.++.++...++.+|++.. .+++|..|.++|||+++ |+
T Consensus 229 ~~l~~~g~--------v~r~-----~lGv~~~~~~~~~a~~~gl~~~-------------~G~~V~~V~~~spA~~aGL~ 282 (436)
T 4a8c_A 229 QQLIDFGE--------IKRG-----LLGIKGTEMSADIAKAFNLDVQ-------------RGAFVSEVLPGSGSAKAGVK 282 (436)
T ss_pred HHHHhccc--------cccc-----cCceEecccCHHHHHHhCCCCC-------------cceEEEEECCCChHHHCCCC
Confidence 99999876 7788 9999999999999999998765 67889999999999999 99
Q ss_pred CCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeeeecCCCCcceEEeecCccccCCchhhh
Q 001276 919 QGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRDGNGTTRVINWCGCIVQDPHPAVR 998 (1109)
Q Consensus 919 ~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l~v~l~~~~~~~t~~~~~~~G~~~~~p~~~~r 998 (1109)
.||+|++|||++|.++.++..++....++ +++.++|.|+|+.+++++++...+...........|+....+...
T Consensus 283 ~GD~I~~vnG~~v~~~~~l~~~l~~~~~g----~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~~gl~~~~~~~~-- 356 (436)
T 4a8c_A 283 AGDIITSLNGKPLNSFAELRSRIATTEPG----TKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDG-- 356 (436)
T ss_pred CCCEEEEECCEECCCHHHHHHHHHhcCCC----CEEEEEEEECCEEEEEEEEECCCCcccccccccccCceeeecccc--
Confidence 99999999999999999999998655555 899999999999999999988765322211111133322222110
Q ss_pred hccCCCCCCCcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEeeC
Q 001276 999 ALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQD 1078 (1109)
Q Consensus 999 ~~~~lp~~~~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk~~ 1078 (1109)
. ......|++|..|.++|||+++||++||+|++|||+++.++++|.+++++. +..+.|+ +.|+|..+++++.+.
T Consensus 357 --~-~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~l~~~--~~~v~l~-v~R~g~~~~~~~~~~ 430 (436)
T 4a8c_A 357 --Q-LKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAK--PAIIALQ-IVRGNESIYLLMRLE 430 (436)
T ss_pred --c-ccCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhC--CCeEEEE-EEECCEEEEEEEEec
Confidence 0 011124899999999999999999999999999999999999999999983 4489998 899999999999887
Q ss_pred Ccc
Q 001276 1079 LHY 1081 (1109)
Q Consensus 1079 ~~y 1081 (1109)
+++
T Consensus 431 ~~~ 433 (436)
T 4a8c_A 431 HHH 433 (436)
T ss_pred ccC
Confidence 554
No 5
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=100.00 E-value=3.1e-50 Score=475.45 Aligned_cols=375 Identities=19% Similarity=0.339 Sum_probs=250.5
Q ss_pred cchHHHHHHHhCCceEEEEEEeee-------------ccCCCC----------------------------CCccEEEEE
Q 001276 35 ADDWRKALNKVVPAVVVLRTTACR-------------AFDTEA----------------------------AGASYATGF 73 (1109)
Q Consensus 35 ~~~~~~~~~~~~~sVV~I~~~~~~-------------~~d~~~----------------------------~~~~~GSGf 73 (1109)
.++|.++++++.||||.|.+.... .|+... ...+.||||
T Consensus 12 ~~~~~~~~~~~~pavV~i~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSG~ 91 (448)
T 1ky9_A 12 MPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGV 91 (448)
T ss_dssp CCCSHHHHHHHGGGEEEEEEEEEEEECCCCSSCCTTCCCC---------------------------CEEEEEEEEEEEE
T ss_pred CccHHHHHHHhCCcEEEEEEEEEecccCCccchhhhhhhccccccccccccccccccccccccccccccccccccEEEEE
Confidence 457999999999999999987542 122110 113679999
Q ss_pred EEeCCCcEEEeCccccCCCCeEEEEEecCCeEEEEEEEEEcCCCcEEEEEEcC-CCcccccccCCCCCCccCCCCCEEEE
Q 001276 74 VVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDP-SAIQFLNYDEIPLAPEAACVGLEIRV 152 (1109)
Q Consensus 74 vV~~~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv~~d~~~DlAlLk~~~-~~~~~~~l~~l~l~~~~~~~G~~V~~ 152 (1109)
+|++++||||||+|||. +...+.|++.|+++++|++++.|+.+||||||++. ..++++++.+ +..+++||+|++
T Consensus 92 ii~~~~g~IlTn~HVv~-~a~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv~~~~~~~~~~l~~----s~~~~~G~~V~a 166 (448)
T 1ky9_A 92 IIDADKGYVVTNNHVVD-NATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMAD----SDALRVGDYTVA 166 (448)
T ss_dssp EEETTTTEEEEEHHHHT-TEEEEEEEETTSCEEEEEEEEEETTTTEEEEEESSCCSCCCCCBCC----GGGCCTTCEEEE
T ss_pred EEECCCCEEEEChHHhC-CCCEEEEEECCCCEEEEEEEEEcCCCCEEEEEecCCCCCceEEecc----cccCCCCCEEEE
Confidence 99984599999999999 66789999999999999999999999999999984 4555555543 568999999999
Q ss_pred EecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCCcEEEEeccccCC----CCCcc
Q 001276 153 VGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAF 228 (1109)
Q Consensus 153 iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~f 228 (1109)
+|||++...+++.|+|+++.|.. +....+.+ +||+++++++|||||||||.+|+||||++..... .+++|
T Consensus 167 iG~P~g~~~tvt~Givs~~~r~~--~~~~~~~~----~iqtda~i~~GnSGGpl~n~~G~vvGI~~~~~~~~~~~~g~gf 240 (448)
T 1ky9_A 167 IGNPFGLGETVTSGIVSALGRSG--LNAENYEN----FIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGF 240 (448)
T ss_dssp EECTTSSSCEEEEEEEEEESSCC-------CCC----CEEESCCCTTSCCCSEEECTTSCEEEEEECSSTTSCCCSSSEE
T ss_pred EECCCCCCCeEEeEEEeeccccc--cCCCCccC----EEEEcCCCCCCCCCCeeECCCCEEEEEEEEeecCCCCccceee
Confidence 99999999999999999998861 11123333 5999999999999999999999999999876542 46899
Q ss_pred ccchHHHHHHHHHHHhcCCcccccccccccCCCccceEEEEcChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCC
Q 001276 229 FLPLERVVRALRFLQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPG 308 (1109)
Q Consensus 229 alP~~~i~~~l~~l~~~~~~~~~~~~~~~v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~ 308 (1109)
+||++.+++++++|.+++ .+.|+|||+.++.++.+.++.|||+ ...|++| ..|.++
T Consensus 241 aIP~~~~~~~~~~l~~~g----------~v~~~~LGv~~~~~~~~~a~~lgl~-------------~~~G~~V-~~V~~g 296 (448)
T 1ky9_A 241 AIPSNMVKNLTSQMVEYG----------QVKRGELGIMGTELNSELAKAMKVD-------------AQRGAFV-SQVLPN 296 (448)
T ss_dssp EEEHHHHHHHHHHHHHHS----------SCCBCCCCCSCCCTTSHHHHTSCCT-------------TCCSEEC-CCCTTC
T ss_pred eeecccchhhHHHHhhhc----------ccceeccccccccccHHHHHHhCCC-------------CCCceEE-EEeccC
Confidence 999999999999999988 7899999999999998899999987 4578887 699999
Q ss_pred Ccccc-CCCCCCEEEEECCEEeCChhHHHHHHhc-CCCCeEEEEEEECCEEEEEEEEeecCCCCC---CCccccccceEE
Q 001276 309 GPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDD-GVDKNIELLIERGGISMTVNLVVQDLHSIT---PDYFLEVSGAVI 383 (1109)
Q Consensus 309 spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~-~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~---~~~~~~~~G~~~ 383 (1109)
|||++ ||++||+|++|||+++.++.++..++.. .+|++++|+|.|+|+.+++++++...+... ........|+.+
T Consensus 297 spA~~AGL~~GDvI~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~~~~~~~~~~G~~l 376 (448)
T 1ky9_A 297 SSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEM 376 (448)
T ss_dssp SSSTTTTCCTTCEECBSSSSBCCSSHHHHHHTTSSBTTCCCEEEEESSSCEEECCCC-----------------------
T ss_pred CHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEecCCCcccccccccccccceEe
Confidence 99999 9999999999999999999999988854 689999999999999888877765433210 011223346655
Q ss_pred ecCCHHHhhccCCCCCeEEEEc--CCChhHHcCCCCCCEEEEcCCeecCCHHHHHHHHHhcCCCCeEeEEEEee
Q 001276 384 HPLSYQQARNFRFPCGLVYVAE--PGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEYSSY 455 (1109)
Q Consensus 384 ~~l~~~~~~~~~~~~~gv~v~~--pg~~a~~aGl~~GD~I~~Vng~~v~~l~~~~~~i~~~~~g~~v~l~~~~~ 455 (1109)
.++. +..|++|.+ ++++|+++||++||+|++|||+++.++++|.++++..+ + .+.|++.|-
T Consensus 377 ~~~~---------~~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~~~l~~~l~~~~-~-~v~l~v~R~ 439 (448)
T 1ky9_A 377 SNKG---------KDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKP-S-VLALNIQRG 439 (448)
T ss_dssp --------------------------------------------------------------------------
T ss_pred eccC---------CCCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHcCC-C-eEEEEEEEC
Confidence 5432 125788874 89999999999999999999999999999999998743 2 666666654
No 6
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=100.00 E-value=4e-48 Score=459.53 Aligned_cols=392 Identities=15% Similarity=0.108 Sum_probs=306.6
Q ss_pred cccccEEEEEEEcCccccc---CCcccceeeEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEeeC
Q 001276 624 VIEPTLVMFEVHVPPSCMI---DGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLHP 700 (1109)
Q Consensus 624 ~~~~SvV~V~~~~~~~~~~---dg~~~~~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~dp 700 (1109)
...+|||.|.+......+. .......+.||||||+ +|||||| +||+.++..|.|++..+++.++|+|++.|+
T Consensus 45 ~~~~sVV~I~~~~~~~~~~~Pw~~~~~~~s~GSGfiI~----dG~IlTN-~HVV~~a~~i~V~~~~dg~~~~A~vv~~D~ 119 (539)
T 4fln_A 45 SFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIG----DGKLLTN-AHCVEHDTQVKVKRRGDDRKYVAKVLVRGV 119 (539)
T ss_dssp HHHTTEEEEEEEECCBCSSSTTSBCCCEEEEEEEEEEE----TTEEEEC-GGGGTTEEEEEEECTTCCCCEEEEEEEEET
T ss_pred ccCCCeEEEEEEecCCCCCCccccCCccceEEEEEEEE----CCEEEEC-hHHcCCCCeEEEEEccCCEEEEEEEEEECC
Confidence 4668999998865421111 1223445789999998 6999999 668888999999996339999999999999
Q ss_pred CCcEEEEEECCCCCCcccccceeceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCccc--ccc
Q 001276 701 VHNFALIAYDPSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYR--AMN 778 (1109)
Q Consensus 701 ~~dlAilk~d~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~--~~~ 778 (1109)
.+||||||++...++ ..+.++.++++ .+.||+|++||||+++.. .+|| .|++++..+..+. ...
T Consensus 120 ~~DLAvLkv~~~~~~----~~~~pl~~g~~--~~vGd~V~aiG~P~g~~~----~tvT----~GIVSa~~r~~~~~~~~~ 185 (539)
T 4fln_A 120 DCDIALLSVESEDFW----KGAEPLRLGHL--PRLQDSVTVVGYPLGGDT----ISVT----KGVVSRIEVTSYAHGSSD 185 (539)
T ss_dssp TTTEEEEEECCSSSS----TTCCCCCBCCC--CCTTCEEEEEECCSSSCC----CEEE----EEEEEEEEEEECTTSCCE
T ss_pred CCCEEEEEEeCCcCC----cCCceeecCCc--CcCCCeEEEEEcCCCCCC----CcEE----eEEECcccccccCCCCcc
Confidence 999999999877654 24455788776 488999999999998753 2344 4444433332221 123
Q ss_pred eeEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHHHHHHcCCCCCcccccccc
Q 001276 779 MEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGASGPSLLINGVK 857 (1109)
Q Consensus 779 ~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l~~~~~~~~~~~~~v~ 857 (1109)
..+||+|++|++ ||||||+|.+|+||||+++.... ...++++ ||||++.+++++++|++.|+ +.
T Consensus 186 ~~~IQtDAaInpGnSGGPLvn~~GeVIGIntai~~~-----~~~~gig--fAIP~~~v~~vl~~l~~~G~--------~~ 250 (539)
T 4fln_A 186 LLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRS-----EETENIG--YVIPTTVVSHFLTDYERNGK--------YT 250 (539)
T ss_dssp EEEEEESSCCCTTTTTSEEECSSSCEEEEECCCC----------CCCE--EEEEHHHHHHHHHHHHTTTS--------CC
T ss_pred eeEEEEEeEecCCCccchhccCCCcEEEEEEEEecC-----CCCCcce--ecccHHHHHHHHHHHHHcCe--------EE
Confidence 567999999976 89999999999999999885433 1344555 88999999999999998775 43
Q ss_pred -cCCCceeeeeeEEEEc-ChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhhhccCCCEEEEECCEEcCChh
Q 001276 858 -RPMPLVRILEVELYPT-LLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENMLEQGDMMLAINKQPVTCFH 935 (1109)
Q Consensus 858 -r~~p~~~~Lgv~~~~i-~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~spA~~aL~~GDiIlsVnG~~V~~~~ 935 (1109)
|+ |||+.++.+ +...++.+|++.. ++++|..|.++|||+++|+.||+|++|||++|.+..
T Consensus 251 ~r~-----~LGv~~~~~~~~~~~~~~~l~~~-------------~Gv~V~~V~~~spA~~al~~GDvI~~idg~~V~~~g 312 (539)
T 4fln_A 251 GYP-----CLGVLLQKLENPALRECLKVPTN-------------EGVLVRRVEPTSDASKVLKEGDVIVSFDDLHVGCEG 312 (539)
T ss_dssp CCC-----BCCEEEEECCCHHHHHHHTCSSS-------------BCEEEEEECTTSGGGGTCCTTCEEEEETTEECBSSS
T ss_pred eee-----ecceEEEecCCHHHHHhcCCCCc-------------CceeeecccCCChHHhCccCCCEEEEECCEEeCcCC
Confidence 66 999999987 5666777888765 789999999999999889999999999999998755
Q ss_pred H----------HHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeeeecCCC-------CcceEEeecCccccCCchhhh
Q 001276 936 D----------IENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRDGN-------GTTRVINWCGCIVQDPHPAVR 998 (1109)
Q Consensus 936 d----------l~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l~v~l~~~~~~-------~t~~~~~~~G~~~~~p~~~~r 998 (1109)
+ |..++...++| ++++++|+|+|++++++|++...+.. ...++..++|+.++++.....
T Consensus 313 ~~~~~~~~~~~l~~~v~~~~~G----d~v~l~v~R~Gk~~~v~Vtl~~~~~~~~~~~~~~~p~~~~~~Gl~f~~Lt~~~~ 388 (539)
T 4fln_A 313 TVPFRSSERIAFRYLISQKFAG----DIAEIGIIRAGEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLI 388 (539)
T ss_dssp EEECSTTCEEETHHHHHTSCTT----CEEEEEEEETTEEEEEEEECBCCCCSSCSCTTSSCCCCCCSTTEEEEECCHHHH
T ss_pred eeccccchhHHHHHHHHcCCCC----CEEEEEEEECCEEEEEEEEEccCccccccccccCCCccccccceEEeeCCHHHH
Confidence 4 66777777776 99999999999999999999876532 234567789999999887655
Q ss_pred hc-cC----------------CCCCCCcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEE
Q 001276 999 AL-GF----------------LPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRV 1061 (1109)
Q Consensus 999 ~~-~~----------------lp~~~~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l 1061 (1109)
+. .. .....++|+|++|.++|+|.+||+++||.|++|||++|.++++|.+++++. +++++++
T Consensus 389 ~~~~~~~~~~~l~~~~~~~~~~~~~~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~~l~~~l~~~-k~~~l~~ 467 (539)
T 4fln_A 389 EEECEDTIGLKLLTKARYSVARFRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHHLAHLIDMC-KDKYLVF 467 (539)
T ss_dssp TTSCSSSSCHHHHHHHHHCCCSSTTCCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSHHHHHHHHHTC-CSSEEEE
T ss_pred HhhcccccCceeeehhhhhhhccCCceEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCHHHHHHHHHHc-CCCeEEE
Confidence 31 10 111235899999999999999999999999999999999999999999995 5899988
Q ss_pred EEEEeCCeEEEEE
Q 001276 1062 RTVHLNGKPRVLT 1074 (1109)
Q Consensus 1062 ~~v~rdg~~~~i~ 1074 (1109)
+ ..++...++.
T Consensus 468 ~--~~~~~~ivL~ 478 (539)
T 4fln_A 468 E--FEDNYVAVLE 478 (539)
T ss_dssp E--ETTSCEEEEE
T ss_pred E--ECCCEEEEEE
Confidence 8 3456655444
No 7
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=100.00 E-value=5.8e-49 Score=464.96 Aligned_cols=399 Identities=18% Similarity=0.167 Sum_probs=305.6
Q ss_pred cccccccccEEEEEEEcCccc------------ccCCc------------ccceeeEEEEEEEeeCCceEEEEeCceecC
Q 001276 620 FAESVIEPTLVMFEVHVPPSC------------MIDGV------------HSQHFFGTGVIIYHSQSMGLVVVDKNTVAI 675 (1109)
Q Consensus 620 ~~~~~~~~SvV~V~~~~~~~~------------~~dg~------------~~~~~~GsG~VId~~~~~G~IlTn~~~V~~ 675 (1109)
.+++++.||||.|.+...... .+..+ ....+.||||||+ .++|||||| +||+.
T Consensus 23 ~~~~~~~pavv~i~~~~~~~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~GSGfiI~--~~~G~IlTn-~HVv~ 99 (451)
T 3pv2_A 23 PVLKNIMPAIVNVAVQGYLPNDVTPPGSAGNDEENQPNNRPPQSRMPEKGRKFESIGSGVIID--PNNGVIITN-DHVIR 99 (451)
T ss_dssp HHHHHHGGGEEEEEEEEECCC-----------------------------CEEEEEEEEEEEE--TTTTEEEEC-HHHHT
T ss_pred HHHHHhCCcEEEEEEEEeecccCCCccccccchhHHhhcccccccccccCcccceeEEEEEEE--CCCCEEEEC-hHHhC
Confidence 478999999999988642100 01111 1234679999999 235999999 66778
Q ss_pred CCCcEEEEeecCCeEEeEEEEEeeCCCcEEEEEECCCCCCcccccceeceecCCCccCCCCCeEEEEeeCCCCcceeeee
Q 001276 676 SASDVMLSFAAFPIEIPGEVVFLHPVHNFALIAYDPSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKS 755 (1109)
Q Consensus 676 ~~~di~V~~~d~~~~~~a~vv~~dp~~dlAilk~d~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~ 755 (1109)
++.++.|++.+ ++.++|++++.|+.+||||||+++..+++ ++|+++..++.||+|+++|||+++.......
T Consensus 100 ~a~~i~V~~~d-g~~~~a~vv~~d~~~DlAlLkv~~~~l~~--------~~l~~s~~~~~G~~V~aiG~P~G~~~~~~~~ 170 (451)
T 3pv2_A 100 NASLITVTLQD-GRRLKARLIGGDSETDLAVLKIDAKNLKS--------LVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQ 170 (451)
T ss_dssp TEEEEEEECTT-SCEEECEEEEEETTTTEEEEECCCSSCCC--------CCBCCGGGCCTTCEEEEEECCCCC-----CC
T ss_pred CCCEEEEEEcC-CCEEEEEEEecCcCCcEEEEEEcCcCCce--------eEecCcccCCCCCEEEEEECCCCccccccCC
Confidence 88999999998 99999999999999999999998877766 8898887899999999999999986111112
Q ss_pred eEeccccccccCCCCCCccc-ccceeEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHH
Q 001276 756 IVTNPCAALNISSADCPRYR-AMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIY 833 (1109)
Q Consensus 756 ~vt~i~~~~~i~~~~~~~y~-~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~ 833 (1109)
+++ .+++++..+..+. .....+||+|+++++ +|||||+|.+|+||||+++.... +....++.||||++
T Consensus 171 ~vt----~Givs~~~r~~~~~~~~~~~iqtda~i~~GnSGGPl~n~~G~VIGI~t~~~~~------~~~~~g~gfaIP~~ 240 (451)
T 3pv2_A 171 SAT----FGIVSALKRSDLNIEGVENFIQTDAAINPGNSGGALVNAKGELIGINTAILSP------YGGNVGIGFAIPIN 240 (451)
T ss_dssp EEE----EEEEEEEC----------CCEEESSCCCGGGTTSEEEETTCCEEEEEECCC------------CCCEEEEEHH
T ss_pred cee----EEEEeeccccccCCCCcceEEEEecccCCCCCcCcccCCCCeEEEEEeEeecC------CCCccceeeeehhH
Confidence 333 3444433332111 123468999999965 79999999999999999885443 11223455899999
Q ss_pred HHHHHHHHHHcCCCCCcccccccccCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHH
Q 001276 834 TISRVLDKIISGASGPSLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKA 913 (1109)
Q Consensus 834 ~i~~~l~~l~~~~~~~~~~~~~v~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~spA 913 (1109)
.+++++++|+++++ +.|+ |||+.++.++...++.+|++.. ..+++|..|.++|||
T Consensus 241 ~~~~~~~~l~~~g~--------v~r~-----~lGv~~~~~~~~~a~~~gl~~~------------~~G~~V~~V~~~spA 295 (451)
T 3pv2_A 241 MVKDVAQQIIKFGS--------IHRG-----LMGIFVQHLTPELAQAMGYPED------------FQGALVSQVNPNSPA 295 (451)
T ss_dssp HHHHHHHHHHHHSS--------CCCC-----BCCEEEEECCHHHHHHTTSCTT------------CCCEEEEEECTTSHH
T ss_pred HHHHHHHHHHhcCC--------cccc-----cccceEEeccHHHHHhcCCCcC------------CceEEEEecCCCChH
Confidence 99999999999876 7788 9999999999999999998753 257889999999999
Q ss_pred hhh-ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeeeecCCCCc---ceEEeecCcc
Q 001276 914 ENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRDGNGT---TRVINWCGCI 989 (1109)
Q Consensus 914 ~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l~v~l~~~~~~~t---~~~~~~~G~~ 989 (1109)
+++ |+.||+|++|||++|.++.++..++....++ +++.++|.|+|+++++++++...+.... .....+.|+.
T Consensus 296 ~~aGL~~GDvI~~vnG~~v~~~~~l~~~l~~~~~g----~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~~~~~~~~~G~~ 371 (451)
T 3pv2_A 296 ELAGLKAGDIITQINDTKITQATQVKTTISLLRVG----STVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLA 371 (451)
T ss_dssp HHHTCCTTCEEEEETTEECCSHHHHHHHHHTSCTT----CEEEEEEEETTEEEEEEEECBCHHHHHHHHHHHSTTTTTEE
T ss_pred HHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCC----CEEEEEEEECCEEEEEEEEEccCCccccccccccccccccc
Confidence 999 9999999999999999999999999766665 8999999999999999998876542110 0001234444
Q ss_pred ccCCchhhhhccCCCCCCCcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 990 VQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 990 ~~~p~~~~r~~~~lp~~~~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+.......+. .+ ...|++|..|.++|||+++||++||+|++|||+++.++++|.+++++ .++.+.|+ +.|+|.
T Consensus 372 l~~~~~~~~~---~~-~~~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~~~~~~~l~~--~~~~v~l~-v~R~g~ 444 (451)
T 3pv2_A 372 LRAFEQESPP---HG-NVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQE--KKKELLVQ-VLRGPG 444 (451)
T ss_dssp EEEEEEECTT---SC-EEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHTTS--SCSCEEEE-EEETTE
T ss_pred cccCChhHhc---cc-CCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHhc--CCCeEEEE-EEECCE
Confidence 4332211111 11 12489999999999999999999999999999999999999999997 47889998 799999
Q ss_pred EEEEEEe
Q 001276 1070 PRVLTLK 1076 (1109)
Q Consensus 1070 ~~~i~lk 1076 (1109)
.++++|+
T Consensus 445 ~~~v~l~ 451 (451)
T 3pv2_A 445 SMYLLVI 451 (451)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9888763
No 8
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=100.00 E-value=4.7e-45 Score=417.27 Aligned_cols=304 Identities=21% Similarity=0.347 Sum_probs=258.7
Q ss_pred cCCcchHHHHHHHhCCceEEEEEEeee------------ccCC------CCCCccEEEEEEEeCCCcEEEeCccccCCCC
Q 001276 32 VATADDWRKALNKVVPAVVVLRTTACR------------AFDT------EAAGASYATGFVVDKRRGIILTNRHVVKPGP 93 (1109)
Q Consensus 32 ~~~~~~~~~~~~~~~~sVV~I~~~~~~------------~~d~------~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~ 93 (1109)
++..++|.++++++.+|||.|.+.... .|+. .....+.||||+|++++||||||+|||. +.
T Consensus 9 ~~~~~~~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHVv~-~~ 87 (345)
T 3stj_A 9 QAPLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN-QA 87 (345)
T ss_dssp --CCCBSHHHHHHHGGGEEEEEEEEC------------------------CCEEEEEEEEEEETTTTEEEECHHHHT-TE
T ss_pred cCCCCCHHHHHHHhCCcEEEEEEEEeecccccCchhhhhhcccccccccCcccceeEEEEEEECCCCEEEEChHHhC-CC
Confidence 344568999999999999999987532 1221 1223688999999984499999999999 67
Q ss_pred eEEEEEecCCeEEEEEEEEEcCCCcEEEEEEc-CCCcccccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEEEec
Q 001276 94 VVAEAMFVNREEIPVYPIYRDPVHDFGFFRYD-PSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLD 172 (1109)
Q Consensus 94 ~~~~v~~~~~~~~~a~vv~~d~~~DlAlLk~~-~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~ 172 (1109)
..+.+++.|++.++|++++.|+.+||||||++ +..++++.+.. +..+++|++|+++|||.+...+++.|+|++..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~l~~----s~~~~~G~~V~aiG~p~g~~~~vt~G~Vs~~~ 163 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIAD----SDKLRVGDFAVAVGNPFGLGQTATSGIVSALG 163 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEESSCCSCCCCCBCC----GGGCCTTBEEEEEECGGGCSCEEEEEEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEEcccCCCceEeecC----cccCCCCCEEEEEECCCCCCCcEEeeEEeeec
Confidence 78999999999999999999999999999996 44455544443 57889999999999999999999999999998
Q ss_pred CCCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCCcEEEEeccccCC----CCCccccchHHHHHHHHHHHhcCCc
Q 001276 173 RDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQERRDC 248 (1109)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falP~~~i~~~l~~l~~~~~~ 248 (1109)
+.. +....+. .+||+++++++|+|||||||.+|+||||+++.... .+++|+||++.+++++++|.+.+
T Consensus 164 ~~~--~~~~~~~----~~iq~da~i~~GnSGGPLvn~~G~vVGI~s~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g-- 235 (345)
T 3stj_A 164 RSG--LNLEGLE----NFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG-- 235 (345)
T ss_dssp ECC--SSSSSSC----CEEEECSCCCTTCTTCEEECTTSCEEEEEEEEECTTSSCSSCEEEEEHHHHHHHHHHHHHHS--
T ss_pred ccc--cCCCCcc----CEEEEecccCCCcCccceeCCCCEEEEEEeccccCCCCcceeEEEEehHHHHHHHHHHHhcc--
Confidence 762 2222333 36999999999999999999999999999876542 47899999999999999999988
Q ss_pred ccccccccccCCCccceEEEEcChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCE
Q 001276 249 NIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGE 327 (1109)
Q Consensus 249 ~~~~~~~~~v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~ 327 (1109)
.+.|+|||+.++.++.+.++.|||+ ...|++| ..|.++|||++ ||++||+|++|||+
T Consensus 236 --------~v~~~~lGv~~~~~~~~~a~~~gl~-------------~~~G~~V-~~V~~~spA~~aGL~~GDvI~~ing~ 293 (345)
T 3stj_A 236 --------EIKRGLLGIKGTEMSADIAKAFNLD-------------VQRGAFV-SEVLPGSGSAKAGVKAGDIITSLNGK 293 (345)
T ss_dssp --------SCCCEECCEEEEECCHHHHHHTTCS-------------CCSSEEE-EEECTTSHHHHHTCCTTCEECEETTE
T ss_pred --------cccccccceeeEeecHHHHHhcCCC-------------CCceEEE-EEeccCChHHHcCCCCCCEEEEECCE
Confidence 7899999999999999999999997 5689888 69999999999 99999999999999
Q ss_pred EeCChhHHHHHHhc-CCCCeEEEEEEECCEEEEEEEEeecCCCC
Q 001276 328 VITQFLKLETLLDD-GVDKNIELLIERGGISMTVNLVVQDLHSI 370 (1109)
Q Consensus 328 ~v~~~~~l~~~l~~-~~g~~v~l~v~R~g~~~~~~v~l~~~~~~ 370 (1109)
+|.++.++..++.. .+|++++|+|.|+|+.+++++++..++..
T Consensus 294 ~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~ 337 (345)
T 3stj_A 294 PLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSS 337 (345)
T ss_dssp ECSCHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEEC---
T ss_pred ECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEcccCCC
Confidence 99999999998865 68999999999999999999999877643
No 9
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=100.00 E-value=2.1e-46 Score=442.76 Aligned_cols=356 Identities=19% Similarity=0.277 Sum_probs=218.9
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEeeCCCcEEEEEEC-CCCCCcccccceeceecC
Q 001276 650 FFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLHPVHNFALIAYD-PSSLGVAGASVVRAAELL 728 (1109)
Q Consensus 650 ~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~dp~~dlAilk~d-~~~l~~~~~~~v~~~~l~ 728 (1109)
..||||||+ .++|||||| +||+.++..+.|++.+ ++.++|++++.|+.+||||||++ +..+++ ++|+
T Consensus 86 ~~GSG~ii~--~~~g~IlTn-~HVv~~a~~i~V~~~d-g~~~~a~vv~~d~~~DlAvlkv~~~~~~~~--------~~l~ 153 (448)
T 1ky9_A 86 ALGSGVIID--ADKGYVVTN-NHVVDNATVIKVQLSD-GRKFDAKMVGKDPRSDIALIQIQNPKNLTA--------IKMA 153 (448)
T ss_dssp EEEEEEEEE--TTTTEEEEE-HHHHTTEEEEEEEETT-SCEEEEEEEEEETTTTEEEEEESSCCSCCC--------CCBC
T ss_pred cEEEEEEEE--CCCCEEEEC-hHHhCCCCEEEEEECC-CCEEEEEEEEEcCCCCEEEEEecCCCCCce--------EEec
Confidence 579999999 234999999 6677888899999998 99999999999999999999997 446665 8999
Q ss_pred CCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCccc-ccceeEEEEecccCC-CCCceEEcCCeeEEEE
Q 001276 729 PEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYR-AMNMEVIELDTDFGS-TFSGVLTDEHGRVQAI 806 (1109)
Q Consensus 729 ~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~-~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi 806 (1109)
++..++.||+|+++|||+++....+.+.|+ ...+..+. .....+||+|+++++ +|||||+|.+|+|+||
T Consensus 154 ~s~~~~~G~~V~aiG~P~g~~~tvt~Givs---------~~~r~~~~~~~~~~~iqtda~i~~GnSGGpl~n~~G~vvGI 224 (448)
T 1ky9_A 154 DSDALRVGDYTVAIGNPFGLGETVTSGIVS---------ALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGI 224 (448)
T ss_dssp CGGGCCTTCEEEEEECTTSSSCEEEEEEEE---------EESSCC-----CCCCEEESCCCTTSCCCSEEECTTSCEEEE
T ss_pred ccccCCCCCEEEEEECCCCCCCeEEeEEEe---------eccccccCCCCccCEEEEcCCCCCCCCCCeeECCCCEEEEE
Confidence 888899999999999999986544555554 32222111 113478999999966 7999999999999999
Q ss_pred EeeccccccccCCCCCCceeEecccHHHHHHHHHHHHcCCCCCcccccccccCCCceeeeeeEEEEcChHhHHHcCCCHH
Q 001276 807 WGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGASGPSLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDD 886 (1109)
Q Consensus 807 ~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l~~~~~~~~~~~~~v~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~ 886 (1109)
+++..... | ...+.+ ||||++.+++++++|+++++ +.|+ |||+.++.++...++.+|++..
T Consensus 225 ~~~~~~~~--~--~~~g~g--faIP~~~~~~~~~~l~~~g~--------v~~~-----~LGv~~~~~~~~~a~~lgl~~~ 285 (448)
T 1ky9_A 225 NTAILAPD--G--GNIGIG--FAIPSNMVKNLTSQMVEYGQ--------VKRG-----ELGIMGTELNSELAKAMKVDAQ 285 (448)
T ss_dssp EECSSTTS--C--CCSSSE--EEEEHHHHHHHHHHHHHHSS--------CCBC-----CCCCSCCCTTSHHHHTSCCTTC
T ss_pred EEEeecCC--C--Ccccee--eeeecccchhhHHHHhhhcc--------ccee-----ccccccccccHHHHHHhCCCCC
Confidence 98854330 1 223444 88999999999999999876 7777 8999999998888888988765
Q ss_pred HHHHHHhcCCCccceEEEEeecCCCHHhhh-ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEE
Q 001276 887 WVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREI 965 (1109)
Q Consensus 887 wi~~~~~~~~~~~~~~~V~~V~~~spA~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~ 965 (1109)
.+++|..|.++|||+++ |+.||+|++|||++|.++.++..++...+++ +++.++|.|+|+.+
T Consensus 286 -------------~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~~~l~~~l~~~~~g----~~v~l~v~R~g~~~ 348 (448)
T 1ky9_A 286 -------------RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVG----SKLTLGLLRDGKQV 348 (448)
T ss_dssp -------------CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSHHHHHHTTSSBTT----CCCEEEEESSSCEE
T ss_pred -------------CceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCC----CEEEEEEEECCEEE
Confidence 67889999999999999 9999999999999999999999888555555 78999999999998
Q ss_pred EEEEeeeecCCCC---cceEEeecCccccCCchhhhhccCCCCCCCcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC
Q 001276 966 ELQVGTDVRDGNG---TTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD 1042 (1109)
Q Consensus 966 ~l~v~l~~~~~~~---t~~~~~~~G~~~~~p~~~~r~~~~lp~~~~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~ 1042 (1109)
++++++...+... ......++|+.++... ...|++|..|.++|||+++||++||.|++|||+++.+
T Consensus 349 ~~~v~~~~~~~~~~~~~~~~~~~~G~~l~~~~-----------~~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~ 417 (448)
T 1ky9_A 349 NVNLELQQSSQNQVDSSSIFNGIEGAEMSNKG-----------KDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN 417 (448)
T ss_dssp ECCCC---------------------------------------------------------------------------
T ss_pred EEEEEEecCCCcccccccccccccceEeeccC-----------CCCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCC
Confidence 8888775433211 0111233465554321 1237899999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEe
Q 001276 1043 LEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLK 1076 (1109)
Q Consensus 1043 l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk 1076 (1109)
+++|.+++++.+ + .+.|+ +.|+|..++++|+
T Consensus 418 ~~~l~~~l~~~~-~-~v~l~-v~R~g~~~~~~l~ 448 (448)
T 1ky9_A 418 IAELRKVLDSKP-S-VLALN-IQRGDSTIYLLMQ 448 (448)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHcCC-C-eEEEE-EEECCEEEEEEeC
Confidence 999999999743 4 78888 7899988777653
No 10
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=100.00 E-value=1.8e-41 Score=385.17 Aligned_cols=300 Identities=17% Similarity=0.287 Sum_probs=254.3
Q ss_pred CCcchHHHHHHHhCCceEEEEEEeeec-cCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecCCeEEEEEEE
Q 001276 33 ATADDWRKALNKVVPAVVVLRTTACRA-FDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPI 111 (1109)
Q Consensus 33 ~~~~~~~~~~~~~~~sVV~I~~~~~~~-~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv 111 (1109)
....++.++++++.+|||+|.+..... ++......+.||||+|++ +||||||+||+. +...+.+.+.+++.++++++
T Consensus 6 ~~~~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~gsG~iI~~-~G~IlT~aHvv~-~~~~i~V~~~~g~~~~a~v~ 83 (318)
T 1te0_A 6 ETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ-RGYIITNKHVIN-DADQIIVALQDGRVFEALLV 83 (318)
T ss_dssp CCCCCCHHHHHHHGGGEEEEEEEEECSSSSCCEEEEEEEEEEECST-TCEEEEEHHHHT-TCSEEEEECTTSCEEEEEEE
T ss_pred cccccHHHHHHhcCCcEEEEEeEeccCCcccccccCccEEEEEEeC-CCEEEECHHHcC-CCCEEEEEeCCCCEEEEEEE
Confidence 344578899999999999999876432 122223468899999997 699999999998 45678999999999999999
Q ss_pred EEcCCCcEEEEEEcCC-CcccccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceee
Q 001276 112 YRDPVHDFGFFRYDPS-AIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFY 190 (1109)
Q Consensus 112 ~~d~~~DlAlLk~~~~-~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~ 190 (1109)
++|+.+||||||++.. .++++.+.. +..+++|++|+++|||.+...+++.|+|++..+... ....+ ..+
T Consensus 84 ~~d~~~DlAllk~~~~~~~~~~~l~~----~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~~~~~--~~~~~----~~~ 153 (318)
T 1te0_A 84 GSDSLTDLAVLIIKATGGLPTIPINA----RRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGL--NPTGR----QNF 153 (318)
T ss_dssp EEETTTTEEEEECCCSSCCCCCCCCT----TCCCCTTCEEEEECCCSSSSCCEEEEEEEECCCCCC--CTTCS----CCS
T ss_pred EeCCCceEEEEEEeCCCCCceEEeeC----ccCCCCCCEEEEEEcCCCCCCcEEeeEEeccccccc--CCCCc----CCE
Confidence 9999999999999876 444444432 457899999999999999989999999999876532 11122 235
Q ss_pred EEEeeccCCCCCCCceecCCCcEEEEeccccC-------CCCCccccchHHHHHHHHHHHhcCCcccccccccccCCCcc
Q 001276 191 MQAASGTKGGSSGSPVIDWQGRAVALNAGSKS-------SSASAFFLPLERVVRALRFLQERRDCNIHNWEAVSIPRGTL 263 (1109)
Q Consensus 191 iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~-------~~~~~falP~~~i~~~l~~l~~~~~~~~~~~~~~~v~rg~l 263 (1109)
|++++.+.+|+|||||||.+|+||||++++.. ..+.+|+||++.+++++++|.+++ .+.|+||
T Consensus 154 i~~d~~~~~G~SGGPl~~~~G~vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g----------~~~~~~l 223 (318)
T 1te0_A 154 LQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG----------RVIRGYI 223 (318)
T ss_dssp EEESSCCCTTTTTSEEECTTCCEEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHHHS----------SCCCEEC
T ss_pred EEECCCCCCCCCcCceECCCCeEEEEEeeeeccCCccccccceEEeccHHHHHHHHHHHHHcC----------Ccccccc
Confidence 99999999999999999999999999987654 357899999999999999999888 7889999
Q ss_pred ceEEEEcChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhc-
Q 001276 264 QVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDD- 341 (1109)
Q Consensus 264 g~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~- 341 (1109)
|+.++.++...++.||++ ...|++| ..|.++|||++ ||++||+|++|||+++.++.++..++..
T Consensus 224 Gi~~~~~~~~~~~~~g~~-------------~~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~l~~~l~~~ 289 (318)
T 1te0_A 224 GIGGREIAPLHAQGGGID-------------QLQGIVV-NEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEI 289 (318)
T ss_dssp CEEEEECSCCCSSSSCSS-------------SCCCEEE-EEECTTSTTTTTCCCTTCCEEEETTEECCCHHHHHHHHHTS
T ss_pred eeEeeecchhHHHhccCC-------------CCCcEEE-EEeCCCChHHHCCCCCCCEEEEECCEEcCCHHHHHHHHHhc
Confidence 999999888888888886 4578777 69999999999 9999999999999999999999999865
Q ss_pred CCCCeEEEEEEECCEEEEEEEEeecCC
Q 001276 342 GVDKNIELLIERGGISMTVNLVVQDLH 368 (1109)
Q Consensus 342 ~~g~~v~l~v~R~g~~~~~~v~l~~~~ 368 (1109)
.+|+.++|+|.|+|+.+++++++...+
T Consensus 290 ~~g~~v~l~v~R~g~~~~~~v~~~~~~ 316 (318)
T 1te0_A 290 RPGSVIPVVVMRDDKQLTLQVTIQEYP 316 (318)
T ss_dssp CTTCEEEEEEESSSCEEEEEEECEECC
T ss_pred CCCCEEEEEEEECCEEEEEEEEEccCC
Confidence 789999999999999999998886543
No 11
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=100.00 E-value=8.6e-41 Score=380.27 Aligned_cols=309 Identities=20% Similarity=0.316 Sum_probs=245.1
Q ss_pred cCCcchHHHHHHHhCCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecCCeEEEEEEE
Q 001276 32 VATADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPI 111 (1109)
Q Consensus 32 ~~~~~~~~~~~~~~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv 111 (1109)
......+.++++++.+|||+|......+|++.....+.||||+|++ +||||||+||+. +...+.|++.+++.++++++
T Consensus 11 ~~~~~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~gsG~iI~~-~G~IlT~aHvv~-~~~~i~V~~~~g~~~~a~v~ 88 (325)
T 1lcy_A 11 RSQYNFIADVVEKTAPAVVYIEILDRHPFLGREVPISNGSGFVVAA-DGLIVTNAHVVA-DRRRVRVRLLSGDTYEAVVT 88 (325)
T ss_dssp HHHSCHHHHHHHHHGGGEEEEEEEEEETTTTEEEEEEEEEEEEEET-TTEEEECHHHHT-TCSEEEEECTTSCEEEEEEE
T ss_pred ccchhHHHHHHHHhCCcEEEEEEEecCccCCCccccccEEEEEEeC-CCEEEECHHHcC-CCCEEEEEeCCCCEEEEEEE
Confidence 3445679999999999999999876555654444468899999998 799999999999 56689999999999999999
Q ss_pred EEcCCCcEEEEEEcCC-CcccccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceee
Q 001276 112 YRDPVHDFGFFRYDPS-AIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFY 190 (1109)
Q Consensus 112 ~~d~~~DlAlLk~~~~-~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~ 190 (1109)
++|+.+||||||++.. .++++.+.. +..+++|++|+++|||.+...+++.|+|+...+....++ +.+....+
T Consensus 89 ~~d~~~DlAllkl~~~~~~~~~~l~~----~~~~~~G~~v~~~G~p~~~~~~v~~G~vs~~~~~~~~~g---~~~~~~~~ 161 (325)
T 1lcy_A 89 AVDPVADIATLRIQTKEPLPTLPLGR----SADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLG---LPQTNVEY 161 (325)
T ss_dssp EEETTTTEEEEECCCSSCCCCCCBCC----GGGCCTTCEEEECCCTTSSSSCCEEEEBCSCSCC------------CCCC
T ss_pred EECCCCCEEEEEEcCCCCCceEEecc----cccCCCCCEEEEEECCCCCCCcEEeEEEecccccccccC---CCCCCCCE
Confidence 9999999999999864 344444432 457899999999999999989999999999877543322 11112346
Q ss_pred EEEeeccCCCCCCCceecCCCcEEEEeccccCCCCCccccchHHHHHHHHHHHhcCCcccccccc-cccCCCccceEEEE
Q 001276 191 MQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFLQERRDCNIHNWEA-VSIPRGTLQVTFVH 269 (1109)
Q Consensus 191 iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~~~~~falP~~~i~~~l~~l~~~~~~~~~~~~~-~~v~rg~lg~~~~~ 269 (1109)
|++++.+.+|+|||||||.+|+||||++.+.. .+.+|+||++.++++|+++++.+ .|.+ -.+.|+++|+.+..
T Consensus 162 i~~d~~~~~G~SGGPl~~~~G~vVGI~s~~~~-~g~~~aip~~~i~~~l~~~~~~~-----~~~g~~~~~r~~lGv~~~~ 235 (325)
T 1lcy_A 162 IQTDAAIDFGNAGGPLVNLDGEVIGVNTMKVT-AGISFAIPSDRLREFLHRGEKKN-----SSSGISGSQRRYIGVMMLT 235 (325)
T ss_dssp EEESSCCSTTTTTSEEEETTSCEEEEEEEEEE-TTEEEEEEHHHHHHHTCC--------------------EECCEEEEE
T ss_pred EEEcCCCCCCCccccEECCCCEEEEEEeEeec-CCeeEEEEHHHHHHHHHHhhhcc-----cccccccccccccceEeec
Confidence 99999999999999999999999999987653 57899999999999999887642 0100 15789999999999
Q ss_pred cChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhcCCCCeEE
Q 001276 270 KGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIE 348 (1109)
Q Consensus 270 ~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~~~g~~v~ 348 (1109)
+....++.+|++. ..+|+...|++| ..|.++|||++ ||++||+|++|||++|.++.++...+.. ++.+.
T Consensus 236 l~~~~~~~~~l~~-------~~~~~~~~gv~V-~~V~~~spA~~aGl~~GDvI~~ing~~v~~~~~l~~~l~~--~~~v~ 305 (325)
T 1lcy_A 236 LSPSILAELQLRE-------PSFPDVQHGVLI-HKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT--QSQLA 305 (325)
T ss_dssp CCHHHHHHHTTSC-------TTSCCCSSCEEE-EEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHTT--CSSEE
T ss_pred CCHHHHHhhCccc-------cccccCCCCeEE-EEeCcCChHHHCCCCCCCEEEEECCEEcCCHHHHHHHHhC--CCeEE
Confidence 9988888899862 123434578877 69999999999 9999999999999999999999988865 58899
Q ss_pred EEEEECCEEEEEEEEee
Q 001276 349 LLIERGGISMTVNLVVQ 365 (1109)
Q Consensus 349 l~v~R~g~~~~~~v~l~ 365 (1109)
|+|.|+|+.+++++++.
T Consensus 306 l~v~R~g~~~~~~v~~~ 322 (325)
T 1lcy_A 306 VQIRRGRETLTLYVTPE 322 (325)
T ss_dssp EEEEETTEEEEEEECCE
T ss_pred EEEEECCEEEEEEEEEe
Confidence 99999999988887654
No 12
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=100.00 E-value=6.3e-40 Score=376.65 Aligned_cols=302 Identities=24% Similarity=0.358 Sum_probs=248.6
Q ss_pred CcCCcchHHHHHHHhCCceEEEEEEeee--ccCC--CCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecCCeEE
Q 001276 31 NVATADDWRKALNKVVPAVVVLRTTACR--AFDT--EAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEI 106 (1109)
Q Consensus 31 ~~~~~~~~~~~~~~~~~sVV~I~~~~~~--~~d~--~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~~~~~ 106 (1109)
..+.+....++++++.+|||.|...... .|.. .....+.||||+|++ +||||||+||+. +...+.+.+.+++.+
T Consensus 12 ~~~~e~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~~g~GSG~iI~~-~G~IlT~aHvv~-~~~~i~V~~~~g~~~ 89 (348)
T 3qo6_A 12 LQTDELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDK-QGHIVTNYHVIR-GASDLRVTLADQTTF 89 (348)
T ss_dssp CCHHHHHHHHHHHHHGGGEEEEEEEEEEECSSSCCEEEEEEEEEEEEEEET-TTEEEECHHHHT-TCSEEEEECTTSCEE
T ss_pred cCcchhHHHHHHHHhCCCEEEEEEEeecccccccccccccCceEEEEEEeC-CCEEEECHHHhC-CCcEEEEEECCCCEE
Confidence 4566678889999999999999987532 2211 112357899999997 799999999999 567899999999999
Q ss_pred EEEEEEEcCCCcEEEEEEcCCCcccccccCCCCC-CccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccc
Q 001276 107 PVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLA-PEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYND 185 (1109)
Q Consensus 107 ~a~vv~~d~~~DlAlLk~~~~~~~~~~l~~l~l~-~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~ 185 (1109)
++++++.|+.+||||||++... ..+.+++|. +..+++|+.|+++|||.+...+++.|.++.+.+....+.. ..
T Consensus 90 ~a~~v~~d~~~DlAlLkl~~~~---~~~~~i~l~~s~~~~~G~~v~~iG~p~g~~~~~~~g~vs~~~~~~~~~~~---~~ 163 (348)
T 3qo6_A 90 DAKVVGFDQDKDVAVLRIDAPK---NKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAAT---GR 163 (348)
T ss_dssp EEEEEEEEGGGTEEEEECCCCG---GGCCCCCBCCSTTCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEECCSSS---SS
T ss_pred EEEEEEEcCcCCEEEEEEcCCC---CCceeEEecCcccCCCCCEEEEEECCCCCCCcEeEEEEEeeccccccccC---CC
Confidence 9999999999999999998642 123344443 5678999999999999999999999999999875443211 11
Q ss_pred cceeeEEEeeccCCCCCCCceecCCCcEEEEeccccC----CCCCccccchHHHHHHHHHHHhcCCcccccccccccCCC
Q 001276 186 FNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS----SSASAFFLPLERVVRALRFLQERRDCNIHNWEAVSIPRG 261 (1109)
Q Consensus 186 ~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~----~~~~~falP~~~i~~~l~~l~~~~~~~~~~~~~~~v~rg 261 (1109)
....+|++++.+.+|+|||||||.+|+||||+++... ..+++|+||++.+++++++|.+++ .+.|+
T Consensus 164 ~~~~~i~~da~i~~G~SGGPLvn~~G~vvGI~s~~~~~~~~~~g~gfaiP~~~~~~~~~~l~~~g----------~~~~~ 233 (348)
T 3qo6_A 164 PIQDVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFG----------KVTRP 233 (348)
T ss_dssp CEEEEEEECSCCCTTCTTCEEECTTSCEEEEEEEEECSSSSCSSCEEEEEHHHHHHHHHHHHHHS----------SCCCE
T ss_pred cccCEEEEeCCcCCCCcHHHhhCCCCeEEEEEEeeecCCCCcccEEEEEEecchHHHHHHHHhCC----------ceeee
Confidence 1235799999999999999999999999999987654 357899999999999999999888 78999
Q ss_pred ccceEEEEcChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCC-----------CCEEEEECCEEe
Q 001276 262 TLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEP-----------GDVLVRVNGEVI 329 (1109)
Q Consensus 262 ~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~-----------GD~Il~VnG~~v 329 (1109)
|||+.+... ..++.+| ..|++| ..|.++|||++ ||++ ||+|++|||++|
T Consensus 234 ~lGi~~~~~--~~~~~~~----------------~~Gv~V-~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v 294 (348)
T 3qo6_A 234 ILGIKFAPD--QSVEQLG----------------VSGVLV-LDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKV 294 (348)
T ss_dssp ECCCEECCT--TTTTTTT----------------CSSEEE-EECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCC
T ss_pred ecCcEEccc--hhhhhcC----------------CceEEE-EEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEe
Confidence 999998632 2222222 368887 69999999999 9999 999999999999
Q ss_pred CChhHHHHHHh-cCCCCeEEEEEEECCEEEEEEEEeecCCC
Q 001276 330 TQFLKLETLLD-DGVDKNIELLIERGGISMTVNLVVQDLHS 369 (1109)
Q Consensus 330 ~~~~~l~~~l~-~~~g~~v~l~v~R~g~~~~~~v~l~~~~~ 369 (1109)
.+|.++...|. ..+|++++|+|.|+|+.+++++++..++.
T Consensus 295 ~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~ 335 (348)
T 3qo6_A 295 SNGSDLYRILDQCKVGDEVTVEVLRGDHKEKISVTLEPKPD 335 (348)
T ss_dssp SSSHHHHHHHTTCCTTCEEEEEEECSSSEEEEEEECEECC-
T ss_pred CCHHHHHHHHHhCCCcCEEEEEEEECCEEEEEEEEEccCCC
Confidence 99999999985 47899999999999999999999987653
No 13
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=100.00 E-value=1.9e-40 Score=378.86 Aligned_cols=311 Identities=16% Similarity=0.304 Sum_probs=162.0
Q ss_pred cCCcchHHHHHHHhCCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecCCeEEEEEEE
Q 001276 32 VATADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPI 111 (1109)
Q Consensus 32 ~~~~~~~~~~~~~~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv 111 (1109)
......+.++++++.+|||+|.+....+|+......+.||||+|++ +||||||+||+. +...+.+.+.+++.++++++
T Consensus 10 ~~~~~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~GSG~iI~~-~G~ILTaaHvv~-~~~~i~V~~~~g~~~~a~~~ 87 (332)
T 3num_A 10 RHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSE-DGLIVTNAHVVT-NKHRVKVELKNGATYEAKIK 87 (332)
T ss_dssp HHHHCHHHHHHHHHGGGEEEEEEEEECTTSSCEEEEEEEEEEEEET-TTEEEECTTTCC-TTSEEEEEETTSCEEEEEEE
T ss_pred ccccchHHHHHHHhcCcEEEEEEEeccccCCCcceeeeEEEEEEeC-CCEEEEChHHcC-CCCEEEEEECCCCEEEEEEE
Confidence 3455789999999999999999988777877766778999999997 799999999999 56789999999999999999
Q ss_pred EEcCCCcEEEEEEcCC-CcccccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceee
Q 001276 112 YRDPVHDFGFFRYDPS-AIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFY 190 (1109)
Q Consensus 112 ~~d~~~DlAlLk~~~~-~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~ 190 (1109)
+.|+.+||||||++.. .++++.+.. +..+++|++|+++|||.+...+++.|.++...+..... .+.+....+
T Consensus 88 ~~d~~~DlAlL~l~~~~~~~~~~l~~----~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~~~~~~~---~~~~~~~~~ 160 (332)
T 3num_A 88 DVDEKADIALIKIDHQGKLPVLLLGR----SSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKEL---GLRNSDMDY 160 (332)
T ss_dssp EEETTTTEEEEEECCSSCCCCCCBCC----TTSCCTTCEEEEECC-----CCEEEEEEEEC-----------------CC
T ss_pred EecCCCCeEEEEEcCCCCCceeeecC----cccCCCCCEEEEEECCCCCCcceeeeEEEeeccccccc---CcCCCcCCE
Confidence 9999999999999864 344444433 56789999999999999999999999999987753221 222223456
Q ss_pred EEEeeccCCCCCCCceecCCCcEEEEeccccCCCCCccccchHHHHHHHHHHHhcCCcccccccccccCCCccceEEEEc
Q 001276 191 MQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFLQERRDCNIHNWEAVSIPRGTLQVTFVHK 270 (1109)
Q Consensus 191 iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~~~~~falP~~~i~~~l~~l~~~~~~~~~~~~~~~v~rg~lg~~~~~~ 270 (1109)
+++++.+.+|+|||||||.+|+||||++.... .+++|+||++.++++|+++.+... .....+.|+|||+.+..+
T Consensus 161 i~~d~~i~~G~SGGPlv~~~G~vvGI~s~~~~-~g~~~aip~~~i~~~l~~~~~~~~-----~g~~~~~r~~lGi~~~~~ 234 (332)
T 3num_A 161 IQTDAIINYGNAGGPLVNLDGEVIGINTLKVT-AGISFAIPSDKIKKFLTESHDRQA-----KGKAITKKKYIGIRMMSL 234 (332)
T ss_dssp EEESSCCCTTTTTSEEEETTSCEEEEEEEEEE-TTEEEEEEHHHHHHHHHHHCC--------------------------
T ss_pred EEEECCcCCCCcHHHhhCCCCcEEEEEeeEec-ccceEEECHHHHHHHHHHHhhhhc-----cCcccccccccceEEEec
Confidence 99999999999999999999999999987654 679999999999999998753210 000046799999999987
Q ss_pred ChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhcCCCCeEEE
Q 001276 271 GFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIEL 349 (1109)
Q Consensus 271 ~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~~~g~~v~l 349 (1109)
+...++.+++.. ..++....|++| ..|.++|||++ ||++||+|++|||+++.++.++...+.. |+.++|
T Consensus 235 ~~~~~~~~~~~~-------~~~~~~~~g~~V-~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~--~~~v~l 304 (332)
T 3num_A 235 TSSKAKELKDRH-------RDFPDVISGAYI-IEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKR--ESTLNM 304 (332)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHhhhhhhhc-------cccCCCCCceEE-EEeccCCChHHcCCCCCCEEEEECCEECCCHHHHHHHHhC--CCeEEE
Confidence 776666655431 123334568777 69999999999 9999999999999999999999888754 788999
Q ss_pred EEEECCEEEEEEEEeecC
Q 001276 350 LIERGGISMTVNLVVQDL 367 (1109)
Q Consensus 350 ~v~R~g~~~~~~v~l~~~ 367 (1109)
+|+|+|+.+++++++..+
T Consensus 305 ~v~R~g~~~~~~v~p~~~ 322 (332)
T 3num_A 305 VVRRGNEDIMITVIPEEI 322 (332)
T ss_dssp ------------------
T ss_pred EEEECCEEEEEEEEEeee
Confidence 999999998888877654
No 14
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=100.00 E-value=1e-38 Score=364.94 Aligned_cols=302 Identities=21% Similarity=0.274 Sum_probs=243.6
Q ss_pred ccccccccccEEEEEEEcCccc------ccCCc----------ccceeeEEEEEEEeeCCceEEEEeCceecCCCCcEEE
Q 001276 619 SFAESVIEPTLVMFEVHVPPSC------MIDGV----------HSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVML 682 (1109)
Q Consensus 619 ~~~~~~~~~SvV~V~~~~~~~~------~~dg~----------~~~~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V 682 (1109)
..+++++.+|||.|.+...... .++.+ ....+.||||||+. ++|||||| +||+.++..+.|
T Consensus 16 ~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~--~~G~IlTn-aHVv~~~~~i~V 92 (345)
T 3stj_A 16 APMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINA--SKGYVLTN-NHVINQAQKISI 92 (345)
T ss_dssp HHHHHHHGGGEEEEEEEEC------------------------CCEEEEEEEEEEET--TTTEEEEC-HHHHTTEEEEEE
T ss_pred HHHHHHhCCcEEEEEEEEeecccccCchhhhhhcccccccccCcccceeEEEEEEEC--CCCEEEEC-hHHhCCCCEEEE
Confidence 3488999999999998764210 01111 12357899999992 34999999 667788889999
Q ss_pred EeecCCeEEeEEEEEeeCCCcEEEEEEC-CCCCCcccccceeceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccc
Q 001276 683 SFAAFPIEIPGEVVFLHPVHNFALIAYD-PSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPC 761 (1109)
Q Consensus 683 ~~~d~~~~~~a~vv~~dp~~dlAilk~d-~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~ 761 (1109)
++.+ ++.++|++++.|+.+||||||++ +..+++ ++|+++..++.||+|+++|+|.++....+.+.|+.+.
T Consensus 93 ~~~d-g~~~~a~vv~~d~~~DlAlLkv~~~~~~~~--------~~l~~s~~~~~G~~V~aiG~p~g~~~~vt~G~Vs~~~ 163 (345)
T 3stj_A 93 QLND-GREFDAKLIGSDDQSDIALLQIQNPSKLTQ--------IAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALG 163 (345)
T ss_dssp ECTT-SCEEEEEEEEEETTTTEEEEEESSCCSCCC--------CCBCCGGGCCTTBEEEEEECGGGCSCEEEEEEEEEEE
T ss_pred EeCC-CcEEEEEEEEEcCCCCEEEEEEcccCCCce--------EeecCcccCCCCCEEEEEECCCCCCCcEEeeEEeeec
Confidence 9998 99999999999999999999994 555655 8898887899999999999999987666666666322
Q ss_pred cccccCCCCCCcccccceeEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHHH
Q 001276 762 AALNISSADCPRYRAMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLD 840 (1109)
Q Consensus 762 ~~~~i~~~~~~~y~~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~ 840 (1109)
....... ....+|++|+++++ +|||||+|.+|+||||+++.... +....++.||||++.++++++
T Consensus 164 ----~~~~~~~----~~~~~iq~da~i~~GnSGGPLvn~~G~vVGI~s~~~~~------~~~~~g~gfaIP~~~~~~~~~ 229 (345)
T 3stj_A 164 ----RSGLNLE----GLENFIQTDASINRGNSGGALLNLNGELIGINTAILAP------GGGSVGIGFAIPSNMARTLAQ 229 (345)
T ss_dssp ----ECCSSSS----SSCCEEEECSCCCTTCTTCEEECTTSCEEEEEEEEECT------TSSCSSCEEEEEHHHHHHHHH
T ss_pred ----ccccCCC----CccCEEEEecccCCCcCccceeCCCCEEEEEEeccccC------CCCcceeEEEEehHHHHHHHH
Confidence 1101111 12468999999965 79999999999999999885543 122234458899999999999
Q ss_pred HHHcCCCCCcccccccccCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhhh-ccC
Q 001276 841 KIISGASGPSLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQ 919 (1109)
Q Consensus 841 ~l~~~~~~~~~~~~~v~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~spA~~a-L~~ 919 (1109)
+|+++++ +.|+ |||+.++.++...++.+|++.. .+++|..|.++|||+++ |++
T Consensus 230 ~l~~~g~--------v~~~-----~lGv~~~~~~~~~a~~~gl~~~-------------~G~~V~~V~~~spA~~aGL~~ 283 (345)
T 3stj_A 230 QLIDFGE--------IKRG-----LLGIKGTEMSADIAKAFNLDVQ-------------RGAFVSEVLPGSGSAKAGVKA 283 (345)
T ss_dssp HHHHHSS--------CCCE-----ECCEEEEECCHHHHHHTTCSCC-------------SSEEEEEECTTSHHHHHTCCT
T ss_pred HHHhccc--------cccc-----ccceeeEeecHHHHHhcCCCCC-------------ceEEEEEeccCChHHHcCCCC
Confidence 9998876 7777 9999999999999999998754 67889999999999999 999
Q ss_pred CCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeeeecCC
Q 001276 920 GDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRDG 976 (1109)
Q Consensus 920 GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l~v~l~~~~~ 976 (1109)
||+|++|||++|.++.++..++...++| +++.++|.|+|+++++++++...++
T Consensus 284 GDvI~~ing~~v~~~~~l~~~l~~~~~g----~~v~l~v~R~g~~~~~~v~l~~~~~ 336 (345)
T 3stj_A 284 GDIITSLNGKPLNSFAELRSRIATTEPG----TKVKLGLLRNGKPLEVEVTLDTSTS 336 (345)
T ss_dssp TCEECEETTEECSCHHHHHHHHHTSCTT----CEEEEEEEETTEEEEEEEECEEC--
T ss_pred CCEEEEECCEECCCHHHHHHHHHhcCCC----CEEEEEEEECCEEEEEEEEEcccCC
Confidence 9999999999999999999999766666 8999999999999999999887654
No 15
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=100.00 E-value=1.2e-38 Score=363.24 Aligned_cols=288 Identities=20% Similarity=0.308 Sum_probs=236.1
Q ss_pred cchHHHHHHHhCCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCC--------eEEEEEecCCeEE
Q 001276 35 ADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGP--------VVAEAMFVNREEI 106 (1109)
Q Consensus 35 ~~~~~~~~~~~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~--------~~~~v~~~~~~~~ 106 (1109)
..++.++++++.+|||+|..... ...+.||||+|++ +||||||+||+.... ..+.+++.+++.+
T Consensus 5 ~~~~~~~~~~~~~svV~I~~~~~-------~~~~~gsG~iI~~-~g~ILT~aHvv~~~~~~~~~~~~~~i~V~~~~g~~~ 76 (324)
T 1y8t_A 5 PGSVEQVAAKVVPSVVMLETDLG-------RQSEEGSGIILSA-EGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRTA 76 (324)
T ss_dssp -CCHHHHHHHHGGGEEEEEEEC-----------CEEEEEECCT-TSEEEEEHHHHTTCC--------CEEEEEETTCCEE
T ss_pred cccHHHHHHHhcCcEEEEEEEcc-------CCCceEEEEEEeC-CCEEEEChHHcCCcccccccCCceEEEEEeCCCCEE
Confidence 35799999999999999987531 2467899999997 699999999998533 2789999999999
Q ss_pred EEEEEEEcCCCcEEEEEEcC-CCcccccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccc
Q 001276 107 PVYPIYRDPVHDFGFFRYDP-SAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYND 185 (1109)
Q Consensus 107 ~a~vv~~d~~~DlAlLk~~~-~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~ 185 (1109)
+++++++|+.+||||||++. ..++++.+.. +..+++|++|+++|+|.+...+++.|+++...+........++..
T Consensus 77 ~a~vv~~d~~~DlAllkl~~~~~~~~~~l~~----~~~~~~G~~v~~~G~p~g~~~~~~~G~vs~~~~~~~~~~~~g~~~ 152 (324)
T 1y8t_A 77 PFTVVGADPTSDIAVVRVQGVSGLTPISLGS----SSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQN 152 (324)
T ss_dssp CEEEEECCTTTTEEEEEECSCCSCCCCEECC----STTCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEECC-------C
T ss_pred EEEEEEeCCCCCEEEEEECCCCCCceEEecC----cccCCCCCEEEEEEcCCCCCCcEeeeEEeecccccccccccCccc
Confidence 99999999999999999986 3455444443 457899999999999999888999999998876432111111111
Q ss_pred cceeeEEEeeccCCCCCCCceecCCCcEEEEeccccCC-----------CCCccccchHHHHHHHHHHHhcCCccccccc
Q 001276 186 FNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS-----------SASAFFLPLERVVRALRFLQERRDCNIHNWE 254 (1109)
Q Consensus 186 ~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~-----------~~~~falP~~~i~~~l~~l~~~~~~~~~~~~ 254 (1109)
....+|++++.+.+|+|||||||.+|+||||++++... .+++|+||++.+++++++|.+++
T Consensus 153 ~~~~~i~~d~~~~~G~SGGPlv~~~G~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~~g-------- 224 (324)
T 1y8t_A 153 TVLDAIQTDAAINPGNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTG-------- 224 (324)
T ss_dssp CCEEEEEECSCCCTTCTTEEEECTTSEEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHHHS--------
T ss_pred ccCCEEEEcCCCCCCCccCcEECCCCeEEEEEeeecccCcccccccccccceEEecCHHHHHHHHHHHHHcC--------
Confidence 23457999999999999999999999999999876432 36899999999999999999888
Q ss_pred ccccCCCccceEEEEcChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChh
Q 001276 255 AVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFL 333 (1109)
Q Consensus 255 ~~~v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~ 333 (1109)
.+.|++||+.+.... ...|++| ..|.++|||++ |||+||+|++|||+++.+|.
T Consensus 225 --~~~~~~lGi~~~~~~-----------------------~~~g~~V-~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~ 278 (324)
T 1y8t_A 225 --KASHASLGVQVTNDK-----------------------DTLGAKI-VEVVAGGAAANAGVPKGVVVTKVDDRPINSAD 278 (324)
T ss_dssp --CCCCEECCEEEESCS-----------------------SSSSEEE-EEECTTSTTTTTTCCTTCEEEEETTEECCSHH
T ss_pred --CccccccceEeeecc-----------------------CCCceEE-EEECCCChHHHcCCCCCCEEEEECCEECCCHH
Confidence 788999999987421 3467776 69999999999 99999999999999999999
Q ss_pred HHHHHHhc-CCCCeEEEEEEE-CCEEEEEEEEeecCC
Q 001276 334 KLETLLDD-GVDKNIELLIER-GGISMTVNLVVQDLH 368 (1109)
Q Consensus 334 ~l~~~l~~-~~g~~v~l~v~R-~g~~~~~~v~l~~~~ 368 (1109)
++...+.. .+|++++|+|+| +|+.+++++++...+
T Consensus 279 ~l~~~l~~~~~g~~v~l~v~R~~g~~~~~~v~~~~~~ 315 (324)
T 1y8t_A 279 ALVAAVRSKAPGATVALTFQDPSGGSRTVQVTLGKAE 315 (324)
T ss_dssp HHHHHHHTSCTTCEEEEEEECSSCCEEEEEEECEEC-
T ss_pred HHHHHHHhcCCCCEEEEEEEECCCCEEEEEEEEccCC
Confidence 99988865 689999999999 999999999887654
No 16
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=100.00 E-value=9.3e-36 Score=338.12 Aligned_cols=300 Identities=15% Similarity=0.208 Sum_probs=239.2
Q ss_pred cccccccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEee
Q 001276 620 FAESVIEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH 699 (1109)
Q Consensus 620 ~~~~~~~~SvV~V~~~~~~~~~~dg~~~~~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~d 699 (1109)
..++++.+|+|.|.+..+... .++.......||||+|+ ++|||||| +||+.++.++.|++.+ +..++|++++.|
T Consensus 13 ~~~~~~~~sVV~I~~~~~~~~-~~~~~~~~~~gsG~iI~---~~G~IlT~-aHvv~~~~~i~V~~~~-g~~~~a~v~~~d 86 (318)
T 1te0_A 13 LAVRRAAPAVVNVYNRGLNTN-SHNQLEIRTLGSGVIMD---QRGYIITN-KHVINDADQIIVALQD-GRVFEALLVGSD 86 (318)
T ss_dssp HHHHHHGGGEEEEEEEEECSS-SSCCEEEEEEEEEEECS---TTCEEEEE-HHHHTTCSEEEEECTT-SCEEEEEEEEEE
T ss_pred HHHHhcCCcEEEEEeEeccCC-cccccccCccEEEEEEe---CCCEEEEC-HHHcCCCCEEEEEeCC-CCEEEEEEEEeC
Confidence 478899999999998875211 12223346789999999 67999999 5566778889999998 999999999999
Q ss_pred CCCcEEEEEECCC-CCCcccccceeceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCccc-cc
Q 001276 700 PVHNFALIAYDPS-SLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYR-AM 777 (1109)
Q Consensus 700 p~~dlAilk~d~~-~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~-~~ 777 (1109)
+.+||||||++.. .+++ ++|+++..++.|+.|+++|||.+.....+.+.|+.. .+..|. ..
T Consensus 87 ~~~DlAllk~~~~~~~~~--------~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~---------~~~~~~~~~ 149 (318)
T 1te0_A 87 SLTDLAVLIIKATGGLPT--------IPINARRVPHIGDVVLAIGNPYNLGQTITQGIISAT---------GRIGLNPTG 149 (318)
T ss_dssp TTTTEEEEECCCSSCCCC--------CCCCTTCCCCTTCEEEEECCCSSSSCCEEEEEEEEC---------CCCCCCTTC
T ss_pred CCceEEEEEEeCCCCCce--------EEeeCccCCCCCCEEEEEEcCCCCCCcEEeeEEecc---------cccccCCCC
Confidence 9999999999765 5554 788876668999999999999988665555566522 111111 12
Q ss_pred ceeEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHHHHHHcCCCCCccccccc
Q 001276 778 NMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGASGPSLLINGV 856 (1109)
Q Consensus 778 ~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l~~~~~~~~~~~~~v 856 (1109)
...+|++|+.+.+ +|||||+|.+|+|+||+++..... + ......++.||||++.+++++++|+++++ +
T Consensus 150 ~~~~i~~d~~~~~G~SGGPl~~~~G~vvGI~s~~~~~~--~-~~~~~~~~~~aip~~~i~~~l~~l~~~g~--------~ 218 (318)
T 1te0_A 150 RQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKS--N-DGETPEGIGFAIPFQLATKIMDKLIRDGR--------V 218 (318)
T ss_dssp SCCSEEESSCCCTTTTTSEEECTTCCEEEEEECCSSSS--S-SCCSCCSCEEEEEHHHHHHHHHHHHHHSS--------C
T ss_pred cCCEEEECCCCCCCCCcCceECCCCeEEEEEeeeeccC--C-ccccccceEEeccHHHHHHHHHHHHHcCC--------c
Confidence 3467899999855 799999999999999998754320 0 00123345588999999999999998775 5
Q ss_pred ccCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhhh-ccCCCEEEEECCEEcCChh
Q 001276 857 KRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFH 935 (1109)
Q Consensus 857 ~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~spA~~a-L~~GDiIlsVnG~~V~~~~ 935 (1109)
.|+ |||+.++.++...++.+|++.. .+++|..|.++|||+++ |++||+|++|||++|.++.
T Consensus 219 ~~~-----~lGi~~~~~~~~~~~~~g~~~~-------------~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~ 280 (318)
T 1te0_A 219 IRG-----YIGIGGREIAPLHAQGGGIDQL-------------QGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISAL 280 (318)
T ss_dssp CCE-----ECCEEEEECSCCCSSSSCSSSC-------------CCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCHH
T ss_pred ccc-----cceeEeeecchhHHHhccCCCC-------------CcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCHH
Confidence 566 9999999998888888887654 67889999999999999 9999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeeeecC
Q 001276 936 DIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRD 975 (1109)
Q Consensus 936 dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l~v~l~~~~ 975 (1109)
++..++....++ +.+.++|.|+|+.+++++++...+
T Consensus 281 ~l~~~l~~~~~g----~~v~l~v~R~g~~~~~~v~~~~~~ 316 (318)
T 1te0_A 281 ETMDQVAEIRPG----SVIPVVVMRDDKQLTLQVTIQEYP 316 (318)
T ss_dssp HHHHHHHTSCTT----CEEEEEEESSSCEEEEEEECEECC
T ss_pred HHHHHHHhcCCC----CEEEEEEEECCEEEEEEEEEccCC
Confidence 999998655555 899999999999999999876543
No 17
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=100.00 E-value=4.3e-34 Score=328.16 Aligned_cols=298 Identities=19% Similarity=0.244 Sum_probs=231.0
Q ss_pred ccccccccEEEEEEEcCcccccC--CcccceeeEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEe
Q 001276 621 AESVIEPTLVMFEVHVPPSCMID--GVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFL 698 (1109)
Q Consensus 621 ~~~~~~~SvV~V~~~~~~~~~~d--g~~~~~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~ 698 (1109)
.++++.+|+|.|.+.......+. ......+.||||||+ ++|||||| +||+.++.++.|++.+ +..++|++++.
T Consensus 22 ~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~~g~GSG~iI~---~~G~IlT~-aHvv~~~~~i~V~~~~-g~~~~a~~v~~ 96 (348)
T 3qo6_A 22 LFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWD---KQGHIVTN-YHVIRGASDLRVTLAD-QTTFDAKVVGF 96 (348)
T ss_dssp HHHHHGGGEEEEEEEEEEECSSSCCEEEEEEEEEEEEEEE---TTTEEEEC-HHHHTTCSEEEEECTT-SCEEEEEEEEE
T ss_pred HHHHhCCCEEEEEEEeecccccccccccccCceEEEEEEe---CCCEEEEC-HHHhCCCcEEEEEECC-CCEEEEEEEEE
Confidence 77899999999988654211111 111235689999999 68999999 5567788899999998 99999999999
Q ss_pred eCCCcEEEEEECCCCCCcccccceeceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCcccccc
Q 001276 699 HPVHNFALIAYDPSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMN 778 (1109)
Q Consensus 699 dp~~dlAilk~d~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~~~ 778 (1109)
|+.+||||||++... ..+.+++|+++..++.|+.|+++|+|.+.......+.++.+. .- +... .+....
T Consensus 97 d~~~DlAlLkl~~~~------~~~~~i~l~~s~~~~~G~~v~~iG~p~g~~~~~~~g~vs~~~-~~-~~~~---~~~~~~ 165 (348)
T 3qo6_A 97 DQDKDVAVLRIDAPK------NKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLR-RE-ISSA---ATGRPI 165 (348)
T ss_dssp EGGGTEEEEECCCCG------GGCCCCCBCCSTTCCTTCEEEEEECGGGCTTEEEEEEEEEEE-EE-ECCS---SSSSCE
T ss_pred cCcCCEEEEEEcCCC------CCceeEEecCcccCCCCCEEEEEECCCCCCCcEeEEEEEeec-cc-cccc---cCCCcc
Confidence 999999999997631 123448888877799999999999999887666666666322 11 1110 111123
Q ss_pred eeEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHHHHHHcCCCCCcccccccc
Q 001276 779 MEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGASGPSLLINGVK 857 (1109)
Q Consensus 779 ~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l~~~~~~~~~~~~~v~ 857 (1109)
..+|++|+.+++ +|||||+|.+|+|+||+++.... .....++.||||++.+++++++|+++++ +.
T Consensus 166 ~~~i~~da~i~~G~SGGPLvn~~G~vvGI~s~~~~~------~~~~~g~gfaiP~~~~~~~~~~l~~~g~--------~~ 231 (348)
T 3qo6_A 166 QDVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSP------SGASSGVGFSIPVDTVGGIVDQLVRFGK--------VT 231 (348)
T ss_dssp EEEEEECSCCCTTCTTCEEECTTSCEEEEEEEEECS------SSSCSSCEEEEEHHHHHHHHHHHHHHSS--------CC
T ss_pred cCEEEEeCCcCCCCcHHHhhCCCCeEEEEEEeeecC------CCCcccEEEEEEecchHHHHHHHHhCCc--------ee
Confidence 478999999965 79999999999999999875432 1122344488999999999999998876 67
Q ss_pred cCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhhh-ccC-----------CCEEEE
Q 001276 858 RPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQ-----------GDMMLA 925 (1109)
Q Consensus 858 r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~spA~~a-L~~-----------GDiIls 925 (1109)
|+ |||+.+.+.. .++.+| ..+++|..|.++|||+++ |+. ||+|++
T Consensus 232 ~~-----~lGi~~~~~~--~~~~~~----------------~~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ 288 (348)
T 3qo6_A 232 RP-----ILGIKFAPDQ--SVEQLG----------------VSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITS 288 (348)
T ss_dssp CE-----ECCCEECCTT--TTTTTT----------------CSSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECE
T ss_pred ee-----ecCcEEccch--hhhhcC----------------CceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEE
Confidence 77 9999886432 122222 157889999999999999 999 999999
Q ss_pred ECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeeeecC
Q 001276 926 INKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRD 975 (1109)
Q Consensus 926 VnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l~v~l~~~~ 975 (1109)
|||++|.++.++..++...++| ++++++|.|+|+++++++++...+
T Consensus 289 ing~~v~~~~dl~~~l~~~~~g----~~v~l~v~R~g~~~~~~v~l~~~~ 334 (348)
T 3qo6_A 289 VNGTKVSNGSDLYRILDQCKVG----DEVTVEVLRGDHKEKISVTLEPKP 334 (348)
T ss_dssp ETTBCCSSSHHHHHHHTTCCTT----CEEEEEEECSSSEEEEEEECEECC
T ss_pred ECCEEeCCHHHHHHHHHhCCCc----CEEEEEEEECCEEEEEEEEEccCC
Confidence 9999999999999999655665 899999999999999999987765
No 18
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=100.00 E-value=3.9e-33 Score=317.63 Aligned_cols=293 Identities=18% Similarity=0.273 Sum_probs=222.3
Q ss_pred ccccccccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCC---------cEEEEeecCCe
Q 001276 619 SFAESVIEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISAS---------DVMLSFAAFPI 689 (1109)
Q Consensus 619 ~~~~~~~~~SvV~V~~~~~~~~~~dg~~~~~~~GsG~VId~~~~~G~IlTn~~~V~~~~~---------di~V~~~d~~~ 689 (1109)
...++++.+|+|.|.+... .....||||||+ ++||||||+|+| .++. ++.|++.+ +.
T Consensus 9 ~~~~~~~~~svV~I~~~~~---------~~~~~gsG~iI~---~~g~ILT~aHvv-~~~~~~~~~~~~~~i~V~~~~-g~ 74 (324)
T 1y8t_A 9 EQVAAKVVPSVVMLETDLG---------RQSEEGSGIILS---AEGLILTNNHVI-AAAAKPPLGSPPPKTTVTFSD-GR 74 (324)
T ss_dssp HHHHHHHGGGEEEEEEEC-------------CEEEEEECC---TTSEEEEEHHHH-TTCC--------CEEEEEETT-CC
T ss_pred HHHHHHhcCcEEEEEEEcc---------CCCceEEEEEEe---CCCEEEEChHHc-CCcccccccCCceEEEEEeCC-CC
Confidence 3478899999999987654 234789999999 569999996655 4443 79999998 99
Q ss_pred EEeEEEEEeeCCCcEEEEEECC-CCCCcccccceeceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCC
Q 001276 690 EIPGEVVFLHPVHNFALIAYDP-SSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISS 768 (1109)
Q Consensus 690 ~~~a~vv~~dp~~dlAilk~d~-~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~ 768 (1109)
.++|++++.|+.+||||||++. ..+++ ++|+++..++.|+.|+++|+|.+.....+.+.|+.........
T Consensus 75 ~~~a~vv~~d~~~DlAllkl~~~~~~~~--------~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~G~vs~~~~~~~~~- 145 (324)
T 1y8t_A 75 TAPFTVVGADPTSDIAVVRVQGVSGLTP--------ISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTT- 145 (324)
T ss_dssp EECEEEEECCTTTTEEEEEECSCCSCCC--------CEECCSTTCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEECC--
T ss_pred EEEEEEEEeCCCCCEEEEEECCCCCCce--------EEecCcccCCCCCEEEEEEcCCCCCCcEeeeEEeecccccccc-
Confidence 9999999999999999999976 34544 8888776689999999999999876655666666332111110
Q ss_pred CCCCcccccceeEEEEecccCC-CCCceEEcCCeeEEEEEeecccccc-ccCCCCCCceeEecccHHHHHHHHHHHHcCC
Q 001276 769 ADCPRYRAMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVK-FGCSSSEDHQFVRGIPIYTISRVLDKIISGA 846 (1109)
Q Consensus 769 ~~~~~y~~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~-~g~~~~~~~~~~~aipi~~i~~~l~~l~~~~ 846 (1109)
....|......+|++|+.+.+ +|||||+|.+|+|+||+++...... .+.......++.||||++.+++++++|++++
T Consensus 146 -~~~g~~~~~~~~i~~d~~~~~G~SGGPlv~~~G~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~~g 224 (324)
T 1y8t_A 146 -GEAGNQNTVLDAIQTDAAINPGNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTG 224 (324)
T ss_dssp -------CCCEEEEEECSCCCTTCTTEEEECTTSEEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHHHS
T ss_pred -cccCcccccCCEEEEcCCCCCCCccCcEECCCCeEEEEEeeecccCcccccccccccceEEecCHHHHHHHHHHHHHcC
Confidence 101121234578999999855 7999999999999999987543200 0000112234568999999999999999876
Q ss_pred CCCcccccccccCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhhh-ccCCCEEEE
Q 001276 847 SGPSLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQGDMMLA 925 (1109)
Q Consensus 847 ~~~~~~~~~v~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~spA~~a-L~~GDiIls 925 (1109)
+ +.|+ |||+.+.... ...+++|..|.++|||+++ |+.||+|++
T Consensus 225 ~--------~~~~-----~lGi~~~~~~-----------------------~~~g~~V~~v~~~spA~~aGl~~GD~I~~ 268 (324)
T 1y8t_A 225 K--------ASHA-----SLGVQVTNDK-----------------------DTLGAKIVEVVAGGAAANAGVPKGVVVTK 268 (324)
T ss_dssp C--------CCCE-----ECCEEEESCS-----------------------SSSSEEEEEECTTSTTTTTTCCTTCEEEE
T ss_pred C--------cccc-----ccceEeeecc-----------------------CCCceEEEEECCCChHHHcCCCCCCEEEE
Confidence 5 5555 9999886421 1356889999999999999 999999999
Q ss_pred ECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEe-CCEEEEEEEeeeecC
Q 001276 926 INKQPVTCFHDIENACQALDKDGEDNGKLDITIFR-QGREIELQVGTDVRD 975 (1109)
Q Consensus 926 VnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R-~g~~~~l~v~l~~~~ 975 (1109)
|||++|.++.++..++....++ ++++++|.| +|+.+++++++...+
T Consensus 269 ing~~v~~~~~l~~~l~~~~~g----~~v~l~v~R~~g~~~~~~v~~~~~~ 315 (324)
T 1y8t_A 269 VDDRPINSADALVAAVRSKAPG----ATVALTFQDPSGGSRTVQVTLGKAE 315 (324)
T ss_dssp ETTEECCSHHHHHHHHHTSCTT----CEEEEEEECSSCCEEEEEEECEEC-
T ss_pred ECCEECCCHHHHHHHHHhcCCC----CEEEEEEEECCCCEEEEEEEEccCC
Confidence 9999999999999988655555 889999999 999999999887655
No 19
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=100.00 E-value=3.1e-33 Score=318.06 Aligned_cols=297 Identities=23% Similarity=0.255 Sum_probs=224.4
Q ss_pred cccccccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEee
Q 001276 620 FAESVIEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH 699 (1109)
Q Consensus 620 ~~~~~~~~SvV~V~~~~~~~~~~dg~~~~~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~d 699 (1109)
..++++.+|+|.|++... ..+++.......||||+|+ ++|||||| +||+.++..+.|++.+ +..++|++++.|
T Consensus 19 ~~~~~~~~sVV~I~~~~~--~~~~~~~~~~~~gsG~iI~---~~G~IlT~-aHvv~~~~~i~V~~~~-g~~~~a~v~~~d 91 (325)
T 1lcy_A 19 DVVEKTAPAVVYIEILDR--HPFLGREVPISNGSGFVVA---ADGLIVTN-AHVVADRRRVRVRLLS-GDTYEAVVTAVD 91 (325)
T ss_dssp HHHHHHGGGEEEEEEEEE--ETTTTEEEEEEEEEEEEEE---TTTEEEEC-HHHHTTCSEEEEECTT-SCEEEEEEEEEE
T ss_pred HHHHHhCCcEEEEEEEec--CccCCCccccccEEEEEEe---CCCEEEEC-HHHcCCCCEEEEEeCC-CCEEEEEEEEEC
Confidence 377889999999987543 1234433445789999999 67999999 5566778889999998 999999999999
Q ss_pred CCCcEEEEEECCC-CCCcccccceeceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCC--cc--
Q 001276 700 PVHNFALIAYDPS-SLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCP--RY-- 774 (1109)
Q Consensus 700 p~~dlAilk~d~~-~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~--~y-- 774 (1109)
+.+||||||++.. .+++ ++|+++..++.|++|+++|+|.+.....+.+. ++...+. .+
T Consensus 92 ~~~DlAllkl~~~~~~~~--------~~l~~~~~~~~G~~v~~~G~p~~~~~~v~~G~---------vs~~~~~~~~~g~ 154 (325)
T 1lcy_A 92 PVADIATLRIQTKEPLPT--------LPLGRSADVRQGEFVVAMGSPFALQNTITSGI---------VSSAQRPARDLGL 154 (325)
T ss_dssp TTTTEEEEECCCSSCCCC--------CCBCCGGGCCTTCEEEECCCTTSSSSCCEEEE---------BCSCSCC------
T ss_pred CCCCEEEEEEcCCCCCce--------EEecccccCCCCCEEEEEECCCCCCCcEEeEE---------EecccccccccCC
Confidence 9999999999754 4544 78988767999999999999998764333444 4433321 11
Q ss_pred cccceeEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHHHHHHcCCCCCcccc
Q 001276 775 RAMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGASGPSLLI 853 (1109)
Q Consensus 775 ~~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l~~~~~~~~~~~ 853 (1109)
......+|++|+.+++ +|||||+|.+|+|+||++.... .+ +.||||++.++++++++++.+. ....
T Consensus 155 ~~~~~~~i~~d~~~~~G~SGGPl~~~~G~vVGI~s~~~~---------~g--~~~aip~~~i~~~l~~~~~~~~--~~g~ 221 (325)
T 1lcy_A 155 PQTNVEYIQTDAAIDFGNAGGPLVNLDGEVIGVNTMKVT---------AG--ISFAIPSDRLREFLHRGEKKNS--SSGI 221 (325)
T ss_dssp ---CCCCEEESSCCSTTTTTSEEEETTSCEEEEEEEEEE---------TT--EEEEEEHHHHHHHTCC------------
T ss_pred CCCCCCEEEEcCCCCCCCccccEECCCCEEEEEEeEeec---------CC--eeEEEEHHHHHHHHHHhhhccc--cccc
Confidence 1123568999999855 7999999999999999876422 22 3488999999999999876521 0000
Q ss_pred cccccCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhhh-ccCCCEEEEECCEEcC
Q 001276 854 NGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVT 932 (1109)
Q Consensus 854 ~~v~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~spA~~a-L~~GDiIlsVnG~~V~ 932 (1109)
..+.|+ |||+.+..++...++.+++... ..++...+++|..|.++|||+++ |++||+|++|||++|.
T Consensus 222 ~~~~r~-----~lGv~~~~l~~~~~~~~~l~~~-------~~~~~~~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~ 289 (325)
T 1lcy_A 222 SGSQRR-----YIGVMMLTLSPSILAELQLREP-------SFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ 289 (325)
T ss_dssp -----E-----ECCEEEEECCHHHHHHHTTSCT-------TSCCCSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECC
T ss_pred cccccc-----ccceEeecCCHHHHHhhCcccc-------ccccCCCCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcC
Confidence 114455 9999999999888888877542 22334468889999999999999 9999999999999999
Q ss_pred ChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeee
Q 001276 933 CFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTD 972 (1109)
Q Consensus 933 ~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l~v~l~ 972 (1109)
++.++..++.. + +.+.++|.|+|+.+++++++.
T Consensus 290 ~~~~l~~~l~~---~----~~v~l~v~R~g~~~~~~v~~~ 322 (325)
T 1lcy_A 290 NAEDVYEAVRT---Q----SQLAVQIRRGRETLTLYVTPE 322 (325)
T ss_dssp SHHHHHHHHTT---C----SSEEEEEEETTEEEEEEECCE
T ss_pred CHHHHHHHHhC---C----CeEEEEEEECCEEEEEEEEEe
Confidence 99999988832 2 679999999999999988754
No 20
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=100.00 E-value=7.3e-34 Score=324.46 Aligned_cols=303 Identities=21% Similarity=0.223 Sum_probs=144.0
Q ss_pred cccccccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEee
Q 001276 620 FAESVIEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH 699 (1109)
Q Consensus 620 ~~~~~~~~SvV~V~~~~~~~~~~dg~~~~~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~d 699 (1109)
.+++++.+|+|+|++..+. .+++.......||||||+ ++||||||+| |+.++..+.|++.+ +..++|++++.|
T Consensus 18 ~~~~~~~~sVV~I~~~~~~--~~~~~~~~~~~GSG~iI~---~~G~ILTaaH-vv~~~~~i~V~~~~-g~~~~a~~~~~d 90 (332)
T 3num_A 18 DVVEKIAPAVVHIELFRKL--PFSKREVPVASGSGFIVS---EDGLIVTNAH-VVTNKHRVKVELKN-GATYEAKIKDVD 90 (332)
T ss_dssp HHHHHHGGGEEEEEEEEEC--TTSSCEEEEEEEEEEEEE---TTTEEEECTT-TCCTTSEEEEEETT-SCEEEEEEEEEE
T ss_pred HHHHHhcCcEEEEEEEecc--ccCCCcceeeeEEEEEEe---CCCEEEEChH-HcCCCCEEEEEECC-CCEEEEEEEEec
Confidence 4788999999999997752 455555667899999999 6799999955 55677889999998 999999999999
Q ss_pred CCCcEEEEEECCC-CCCcccccceeceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCcccccc
Q 001276 700 PVHNFALIAYDPS-SLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMN 778 (1109)
Q Consensus 700 p~~dlAilk~d~~-~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~~~ 778 (1109)
+.+||||||++.. .+++ +.|+++..++.|+.|+++|+|.+.......+.++... .. .....+....
T Consensus 91 ~~~DlAlL~l~~~~~~~~--------~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~----~~-~~~~~~~~~~ 157 (332)
T 3num_A 91 EKADIALIKIDHQGKLPV--------LLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQ----RG-GKELGLRNSD 157 (332)
T ss_dssp TTTTEEEEEECCSSCCCC--------CCBCCTTSCCTTCEEEEECC-----CCEEEEEEEEC------------------
T ss_pred CCCCeEEEEEcCCCCCce--------eeecCcccCCCCCEEEEEECCCCCCcceeeeEEEeec----cc-ccccCcCCCc
Confidence 9999999999754 4444 7888777799999999999999886655555555221 00 0112233334
Q ss_pred eeEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHHHHHHcCCCCCcccccccc
Q 001276 779 MEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGASGPSLLINGVK 857 (1109)
Q Consensus 779 ~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l~~~~~~~~~~~~~v~ 857 (1109)
..+|++|+.+++ +|||||+|.+|+|+||+++... .+ +.||||++.++++++++.+..... ..-+.
T Consensus 158 ~~~i~~d~~i~~G~SGGPlv~~~G~vvGI~s~~~~---------~g--~~~aip~~~i~~~l~~~~~~~~~g---~~~~~ 223 (332)
T 3num_A 158 MDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVT---------AG--ISFAIPSDKIKKFLTESHDRQAKG---KAITK 223 (332)
T ss_dssp -CCEEESSCCCTTTTTSEEEETTSCEEEEEEEEEE---------TT--EEEEEEHHHHHHHHHHHCC-------------
T ss_pred CCEEEEECCcCCCCcHHHhhCCCCcEEEEEeeEec---------cc--ceEEECHHHHHHHHHHHhhhhccC---ccccc
Confidence 577999999964 7999999999999999887432 22 348899999999999986421000 00034
Q ss_pred cCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhhh-ccCCCEEEEECCEEcCChhH
Q 001276 858 RPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHD 936 (1109)
Q Consensus 858 r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~spA~~a-L~~GDiIlsVnG~~V~~~~d 936 (1109)
|+ |||+.+..++...++.++.... ..+....+++|..|.++|||+++ |++||+|++|||++|.++.+
T Consensus 224 r~-----~lGi~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~ 291 (332)
T 3num_A 224 KK-----YIGIRMMSLTSSKAKELKDRHR-------DFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAND 291 (332)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc-----ccceEEEecCHHHhhhhhhhcc-------ccCCCCCceEEEEeccCCChHHcCCCCCCEEEEECCEECCCHHH
Confidence 55 9999998887766655443211 12233467889999999999999 99999999999999999999
Q ss_pred HHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeeeecC
Q 001276 937 IENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRD 975 (1109)
Q Consensus 937 l~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l~v~l~~~~ 975 (1109)
+..++. .+ +.++++|.|+|+++++++++....
T Consensus 292 ~~~~l~---~~----~~v~l~v~R~g~~~~~~v~p~~~~ 323 (332)
T 3num_A 292 VSDVIK---RE----STLNMVVRRGNEDIMITVIPEEID 323 (332)
T ss_dssp ---------------------------------------
T ss_pred HHHHHh---CC----CeEEEEEEECCEEEEEEEEEeeec
Confidence 988873 23 679999999999999888776543
No 21
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=99.97 E-value=2.8e-30 Score=280.66 Aligned_cols=203 Identities=20% Similarity=0.321 Sum_probs=157.5
Q ss_pred CCcchHHHHHHHhCCceEEEEEEeee------------ccCC------CCCCccEEEEEEEeCCCcEEEeCccccCCCCe
Q 001276 33 ATADDWRKALNKVVPAVVVLRTTACR------------AFDT------EAAGASYATGFVVDKRRGIILTNRHVVKPGPV 94 (1109)
Q Consensus 33 ~~~~~~~~~~~~~~~sVV~I~~~~~~------------~~d~------~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~ 94 (1109)
...++|.++++++.+|||.|.+.... .|+. .....+.||||+|++++||||||+|||. +..
T Consensus 10 ~~~~~~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHvv~-~a~ 88 (245)
T 3sti_A 10 APLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN-QAQ 88 (245)
T ss_dssp -CCCBSHHHHHHHGGGEEEC----------------------------------CCEEEEEETTTTEEEECGGGC-----
T ss_pred CCCCCHHHHHHHhCCceEEEEEEEeeccccccchhhhhhccccccccccccccceEEEEEEeCCCCEEEEcHHHhC-CCC
Confidence 44568999999999999999987532 1222 1223678999999984499999999999 567
Q ss_pred EEEEEecCCeEEEEEEEEEcCCCcEEEEEEcC-CCcccccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEEEecC
Q 001276 95 VAEAMFVNREEIPVYPIYRDPVHDFGFFRYDP-SAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDR 173 (1109)
Q Consensus 95 ~~~v~~~~~~~~~a~vv~~d~~~DlAlLk~~~-~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~ 173 (1109)
.+.+++.+++.++|++++.|+.+||||||++. ..++++.+.. +..+++|++|+++|||.+...+++.|+|++..+
T Consensus 89 ~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~l~~----s~~~~~G~~v~aiG~P~g~~~~vt~G~vs~~~~ 164 (245)
T 3sti_A 89 KISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIAD----SDKLRVGDFAVAVGNPFGLGQTATSGIVSALGR 164 (245)
T ss_dssp CEEEECTTSCEEEEEEEEEETTTTEEEEEESSCCSCCCCCBCC----GGGCCTTBEEEEEECGGGSCCEEEEEEEEECSS
T ss_pred EEEEEECCCCEEEEEEEEecCCCCEEEEEeccCCCCceeeecC----cCCCCCCCEEEEEECCCCCCCcEEeeEEeeecc
Confidence 89999999999999999999999999999964 4455444443 567899999999999999999999999999987
Q ss_pred CCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCCcEEEEeccccCC----CCCccccchHHHHHHHHHHHhcC
Q 001276 174 DAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQERR 246 (1109)
Q Consensus 174 ~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falP~~~i~~~l~~l~~~~ 246 (1109)
.. +....+.+ +||+++.+++|+|||||||.+|+||||+++.... .+++|+||++.+++++++|++.+
T Consensus 165 ~~--~~~~~~~~----~i~tda~i~~G~SGGPLvn~~G~vVGI~s~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~g 235 (245)
T 3sti_A 165 SG--LNLEGLEN----FIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG 235 (245)
T ss_dssp CS--SCCTTCSS----CEEESSCCCTTTTTSEEECTTSCEEEEEECCC------CCCEEEEEHHHHHHHHHHHHHHH
T ss_pred cc--cCCCCccC----EEEEcCCcCCCcchhHeecCCCeEEEEEEeEECCCCCcceEEEEEeHHHHHHHHHHHHHcC
Confidence 62 22223333 5999999999999999999999999999886643 47899999999999999999887
No 22
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=99.96 E-value=1.9e-29 Score=273.61 Aligned_cols=212 Identities=21% Similarity=0.357 Sum_probs=163.0
Q ss_pred cchHHHHHHHhCCceEEEEEEeee---------------ccCCC----CCC-ccEEEEEEEeCCCcEEEeCccccCCCCe
Q 001276 35 ADDWRKALNKVVPAVVVLRTTACR---------------AFDTE----AAG-ASYATGFVVDKRRGIILTNRHVVKPGPV 94 (1109)
Q Consensus 35 ~~~~~~~~~~~~~sVV~I~~~~~~---------------~~d~~----~~~-~~~GSGfvV~~~~G~IlTn~HVv~~~~~ 94 (1109)
..++.++++++.||||+|.+.... .|+.. ... .+.||||+|++ +||||||+||+. ++.
T Consensus 3 ~~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsG~iI~~-~g~ILTnaHvv~-~~~ 80 (239)
T 1l1j_A 3 ESPIVNVVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGSGFIFDP-EGYILTNYHVVG-GAD 80 (239)
T ss_dssp SCHHHHHHHHHGGGEEEEEEECC--CCCCCHHHHHHHHHHCTTSCTTHHHHEEEEEEEEEEET-TTEEEEEHHHHS-SCS
T ss_pred chhHHHHHHHhCCCEEEEEEEEeecccccccccchhhhhhccccccccccccCceEEEEEEeC-CCEEEEChHHhC-CCC
Confidence 357899999999999999987532 12211 112 57899999997 699999999998 456
Q ss_pred EEEEEecCCeEEEEEEEEEcCCCcEEEEEEcC--CCcccccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEEEec
Q 001276 95 VAEAMFVNREEIPVYPIYRDPVHDFGFFRYDP--SAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLD 172 (1109)
Q Consensus 95 ~~~v~~~~~~~~~a~vv~~d~~~DlAlLk~~~--~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~ 172 (1109)
.+.|++.+++.++|+++++|+.+||||||++. ..++++.+.. +..+++|++|+++|+|.+...+++.|++++..
T Consensus 81 ~i~V~~~~g~~~~a~vv~~d~~~DlAllkl~~~~~~~~~~~l~~----s~~~~~G~~v~~iG~p~g~~~~vt~Givs~~~ 156 (239)
T 1l1j_A 81 NITVTMLDGSKYDAEYIGGDEELDIAVIKIKASDKKFPYLEFGD----SDKVKIGEWAIAIGNPLGFQHTVTVGVVSATN 156 (239)
T ss_dssp SCEEECTTSCEEEBCCCEEETTTTEEEEEBCCSSSCCCCCEECC----GGGCCTTCEEEEEECTTSSSCEEEEEEEEEEE
T ss_pred EEEEEECCCCEEEEEEEEEcCCCCEEEEEEcCCCCCCceEEecC----ccCCccccEEEEEECCCCCCCcEEEEEEeccc
Confidence 78999999999999999999999999999986 4455555443 45789999999999999988899999999987
Q ss_pred CCCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCCcEEEEeccccCC---CCCccccchHHHHHHHHHHHhcCCcc
Q 001276 173 RDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS---SASAFFLPLERVVRALRFLQERRDCN 249 (1109)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~---~~~~falP~~~i~~~l~~l~~~~~~~ 249 (1109)
|..+... . ......+||+++.+.+|+|||||+|.+|+||||++++... .+++|+||++.+++++++|++++
T Consensus 157 r~~~~~~--~-~~~~~~~i~tda~i~~G~SGGPLv~~~G~vvGI~s~~~~~~~~~g~~faIP~~~~~~~~~~l~~~g--- 230 (239)
T 1l1j_A 157 RRIPKPD--G-SGYYVGLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTILTQK--- 230 (239)
T ss_dssp EEEECTT--S-SCEEEEEEEESSCCCTTTTTSEEECSSSEEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGCC-----
T ss_pred cccccCC--C-ccccCCEEEECCCCCCCCccHHhccCCCeEEEEEeeeecCCCcCceEEEEEHHHHHHHHHHHHHCC---
Confidence 7532111 0 0001347999999999999999999999999999886642 47899999999999999999888
Q ss_pred cccccccccCCCccce
Q 001276 250 IHNWEAVSIPRGTLQV 265 (1109)
Q Consensus 250 ~~~~~~~~v~rg~lg~ 265 (1109)
++.|||||+
T Consensus 231 -------~v~r~~lGv 239 (239)
T 1l1j_A 231 -------KVEKAYLGV 239 (239)
T ss_dssp ----------------
T ss_pred -------CCccceeCc
Confidence 789999986
No 23
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=99.96 E-value=6.2e-28 Score=262.27 Aligned_cols=204 Identities=17% Similarity=0.290 Sum_probs=168.3
Q ss_pred CcCCcchHHHHHHHhCCceEEEEEEeeeccC-CCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecCCeEEEEE
Q 001276 31 NVATADDWRKALNKVVPAVVVLRTTACRAFD-TEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVY 109 (1109)
Q Consensus 31 ~~~~~~~~~~~~~~~~~sVV~I~~~~~~~~d-~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~ 109 (1109)
......++.++++++.+|||+|.......+. ......+.||||+|++ +||||||+||+. +...+.+.+.+++.++++
T Consensus 15 ~~~~~~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~GsG~ii~~-~G~IlTaaHvv~-~~~~~~V~~~~g~~~~a~ 92 (237)
T 3lgi_A 15 TDETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ-RGYIITNKHVIN-DADQIIVALQDGRVFEAL 92 (237)
T ss_dssp TTCCCCBCHHHHHHHGGGEEEEEEECCTTTCTTSCCEEEEEEEEEEET-TTEEEEEHHHHT-TCSEEEEECTTSCEEEEE
T ss_pred cccCCcCHHHHHHHhCCcEEEEEEEecccCcccccccceEEEEEEEeC-CCEEEEeeeecC-CCCEEEEEeCCCCEEEEE
Confidence 3445568999999999999999987543321 2233457899999997 799999999999 567899999999999999
Q ss_pred EEEEcCCCcEEEEEEcCCC-cccccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccce
Q 001276 110 PIYRDPVHDFGFFRYDPSA-IQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNT 188 (1109)
Q Consensus 110 vv~~d~~~DlAlLk~~~~~-~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~ 188 (1109)
+++.|+.+||||||++... ++++.+.. +..+++|+.|+++|||.+...+++.|.++...+.... ...+ .
T Consensus 93 vv~~d~~~DlAll~l~~~~~~~~~~l~~----~~~~~~G~~v~~~G~p~~~~~~~~~g~vs~~~~~~~~--~~~~----~ 162 (237)
T 3lgi_A 93 LVGSDSLTDLAVLKINATGGLPTIPINA----RRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLN--PTGR----Q 162 (237)
T ss_dssp EEEEETTTTEEEEECCCSSCCCCCCCCT----TCCCCTTBEEEEEECGGGSCSEEEEEEEEEECCSSCC--TTSC----S
T ss_pred EEEEcCCCCEEEEEecCCCCCceEeccC----cccCCCCCEEEEEECCCCCCCcEEEEEEEeccccccc--CCCc----C
Confidence 9999999999999998654 44433332 5678999999999999999999999999998875321 1122 2
Q ss_pred eeEEEeeccCCCCCCCceecCCCcEEEEeccccC-------CCCCccccchHHHHHHHHHHHhcC
Q 001276 189 FYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS-------SSASAFFLPLERVVRALRFLQERR 246 (1109)
Q Consensus 189 ~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~-------~~~~~falP~~~i~~~l~~l~~~~ 246 (1109)
.++++++.+.+|+|||||||.+|+||||++.... ..+++|+||++.+++++++|.+.+
T Consensus 163 ~~i~~d~~i~~G~SGGPlv~~~G~vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~~~~~~l~~~g 227 (237)
T 3lgi_A 163 NFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 227 (237)
T ss_dssp CCEEECSCCCTTCTTCEEECTTCCEEEEECCCCCCCTTSCCCCSCEEEEEHHHHHHHHHHHHHHS
T ss_pred CEEEEcCccCCCCchHHeeCCCCeEEEEEeeeeccCCCCcCcCceEEEEEHHHHHHHHHHHHHcC
Confidence 3589999999999999999999999999987543 346899999999999999999888
No 24
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=99.95 E-value=4.7e-28 Score=261.87 Aligned_cols=203 Identities=18% Similarity=0.285 Sum_probs=165.1
Q ss_pred cCCcchHHHHHHHhCCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecCCeEEEEEEE
Q 001276 32 VATADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPI 111 (1109)
Q Consensus 32 ~~~~~~~~~~~~~~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv 111 (1109)
......+.++++++.+|||+|......+|.......+.||||+|++ +|+||||+||+. +...+.+.+.+++.++++++
T Consensus 27 ~~~~~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~GSG~iI~~-~G~VLTaaHvv~-~~~~i~V~~~~g~~~~a~v~ 104 (231)
T 3tjo_A 27 RHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSE-DGLIVTNAHVVT-NKHRVKVELKNGATYEAKIK 104 (231)
T ss_dssp HHHSCHHHHHHHHHGGGEEEEEEEEECTTSSCEEEEEEEEEEECST-TCEEEEETTTCC-SSSEEEEECTTSCEEEEEEE
T ss_pred cchhhHHHHHHHHhcCcEEEEEEEeccccCCCccccceEEEEEEeC-CCEEEEchhccc-CCceEEEEcCCCCEEEEEEE
Confidence 3456789999999999999999987656655555558899999997 799999999998 56789999999999999999
Q ss_pred EEcCCCcEEEEEEcCC-CcccccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceee
Q 001276 112 YRDPVHDFGFFRYDPS-AIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFY 190 (1109)
Q Consensus 112 ~~d~~~DlAlLk~~~~-~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~ 190 (1109)
+.|+.+||||||++.. .++++.+.. +..+++|++|+++|||.+...+++.|.++...+..... .+.+....+
T Consensus 105 ~~d~~~DlAlL~l~~~~~~~~~~l~~----~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~~~~~~~---~~~~~~~~~ 177 (231)
T 3tjo_A 105 DVDEKADIALIKIDHQGKLPVLLLGR----SSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKEL---GLRNSDMDY 177 (231)
T ss_dssp EEETTTTEEEEECCCSSCCCCCCBCC----GGGCCTTCEEEEEEEEETTEEEEEEEEEEECC----------------CC
T ss_pred EecCCCCEEEEEecCCCCCCceecCC----cCCCCCCCEEEEEECCCCCCCceeeEEEeecccccccc---ccCCCcccE
Confidence 9999999999999853 444444432 56789999999999999988899999999987754221 122222356
Q ss_pred EEEeeccCCCCCCCceecCCCcEEEEeccccCCCCCccccchHHHHHHHHHHHh
Q 001276 191 MQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFLQE 244 (1109)
Q Consensus 191 iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~~~~~falP~~~i~~~l~~l~~ 244 (1109)
+++++.+.+|+|||||||.+|+||||++.... .+.+|+||++.++++|+++++
T Consensus 178 i~~da~i~~G~SGGPLv~~~G~vVGI~s~~~~-~g~~~aip~~~i~~~l~~~~~ 230 (231)
T 3tjo_A 178 IQTDAIINYGNAGGPLVNLDGEVIGINTLKVT-AGISFAIPSDKIKKFLTESHD 230 (231)
T ss_dssp EEESSCCCTTTTTSEEECTTSCEEEEEEEEEE-TTEEEEEEHHHHHHHHHHHHT
T ss_pred EEEcCCcCCCCchhHeecCCCeEEEEEeEEec-CCeEEEEEHHHHHHHHHHHhh
Confidence 99999999999999999999999999987653 579999999999999999875
No 25
>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Probab=99.92 E-value=3e-24 Score=233.34 Aligned_cols=193 Identities=20% Similarity=0.275 Sum_probs=155.0
Q ss_pred HHHHHHHhCCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecCCeEEEEEEEEEcCCC
Q 001276 38 WRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVH 117 (1109)
Q Consensus 38 ~~~~~~~~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv~~d~~~ 117 (1109)
.+++++++.+|||+|..... .....+.||||+|+ +||||||+||+. +...+.+.+.+ ..++++++++|+.+
T Consensus 33 ~~~~~~~~~~svV~I~~~~~-----~~~~~~~GsG~iI~--~~~VlTaaH~v~-~~~~~~V~~~~-~~~~~~~v~~~~~~ 103 (237)
T 3k6y_A 33 NNPVVAATEPSVVKIRSLAP-----RCQKVLEGTGFVIS--PDRVMTNAHVVA-GSNNVTVYAGD-KPFEATVVSYDPSV 103 (237)
T ss_dssp GCHHHHHHGGGEEEEEEEEG-----GGTEEEEEEEEEEE--TTEEEECGGGTT-TCSEEEEEETT-EEEECEEEEEETTT
T ss_pred cHHHHHHhcCCEEEEEEEec-----CCCcceeEEEEEEE--CCEEEECHHHcC-CCceEEEEECC-cEEEEEEEEEcCCC
Confidence 46789999999999998642 22346789999999 589999999998 56678999988 58999999999999
Q ss_pred cEEEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCC--CCCCCCCccccceeeEEEee
Q 001276 118 DFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDA--PHYKKDGYNDFNTFYMQAAS 195 (1109)
Q Consensus 118 DlAlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~--~~~~~~~~~~~~~~~iq~~a 195 (1109)
||||||++...++ +++|.+..++.|+.++++|||.+...+...|.++...+.. ..|.... .....++++++
T Consensus 104 DiAll~l~~~~~~-----~~~l~~~~~~~G~~v~v~G~p~g~~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 176 (237)
T 3k6y_A 104 DVAILAVPHLPPP-----PLVFAAEPAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPE--PVTRDVYTIRA 176 (237)
T ss_dssp TEEEEECTTCCSC-----CCCBCSSCCCTTCEEEEEECGGGCSCEEEEEEEEEEEEEEECCTTCCSS--CEEEEEEEEES
T ss_pred CEEEEEeCCCCCC-----ceecCCCCCCCCCEEEEEECCCCCCCccceeEEEeeEeecccccccCCC--cccccEEEecC
Confidence 9999999855444 4445467789999999999999988888888877654321 1121110 02345789999
Q ss_pred ccCCCCCCCceecCCCcEEEEeccccCC-CCCccccchHHHHHHHHHHHhcC
Q 001276 196 GTKGGSSGSPVIDWQGRAVALNAGSKSS-SASAFFLPLERVVRALRFLQERR 246 (1109)
Q Consensus 196 ~~~~G~SGgPv~n~~G~vVGi~~~~~~~-~~~~falP~~~i~~~l~~l~~~~ 246 (1109)
.+.+|+|||||||.+|+||||+++.... .+.+|+||++.++++|++++...
T Consensus 177 ~~~~GdSGGPLv~~~G~vvGI~s~~~~~~~~~~~aip~~~v~~~l~~~~~~~ 228 (237)
T 3k6y_A 177 DVEQGDSGGPLIDLNGQVLGVVFGAAIDDAETGFVLTAGEVAGQLAKIGATQ 228 (237)
T ss_dssp CCCTTCTTCEEECTTSCEEEEEEEECSSSTTEEEEEEHHHHHGGGGGTTCCS
T ss_pred ccCCCccHHHEECCCCEEEEEEEeeccCCCcEEEEEEHHHHHHHHHHccCCC
Confidence 9999999999999999999999886644 57899999999999999996665
No 26
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=99.91 E-value=3.3e-24 Score=232.83 Aligned_cols=201 Identities=19% Similarity=0.213 Sum_probs=141.3
Q ss_pred ccccccccccEEEEEEEcCcc----------cccCCc------ccceeeEEEEEEEeeCCc-eEEEEeCceecCCCCcEE
Q 001276 619 SFAESVIEPTLVMFEVHVPPS----------CMIDGV------HSQHFFGTGVIIYHSQSM-GLVVVDKNTVAISASDVM 681 (1109)
Q Consensus 619 ~~~~~~~~~SvV~V~~~~~~~----------~~~dg~------~~~~~~GsG~VId~~~~~-G~IlTn~~~V~~~~~di~ 681 (1109)
..+++++.+|||.|.+..... ..++.. ....+.||||||+ ++ |||||| +||+.++..+.
T Consensus 16 ~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~---~~~G~IlTn-aHvv~~a~~i~ 91 (245)
T 3sti_A 16 APMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIIN---ASKGYVLTN-NHVINQAQKIS 91 (245)
T ss_dssp HHHHHHHGGGEEEC----------------------------------CCEEEEEE---TTTTEEEEC-GGGC----CEE
T ss_pred HHHHHHhCCceEEEEEEEeeccccccchhhhhhccccccccccccccceEEEEEEe---CCCCEEEEc-HHHhCCCCEEE
Confidence 348899999999998865321 011110 1124689999999 44 999999 55667788899
Q ss_pred EEeecCCeEEeEEEEEeeCCCcEEEEEEC-CCCCCcccccceeceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEecc
Q 001276 682 LSFAAFPIEIPGEVVFLHPVHNFALIAYD-PSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNP 760 (1109)
Q Consensus 682 V~~~d~~~~~~a~vv~~dp~~dlAilk~d-~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i 760 (1109)
|++.+ ++.++|++++.|+.+||||||++ +..+++ ++|+++..++.|++|+++|||.+.....+.+.|+
T Consensus 92 V~~~d-g~~~~a~vv~~d~~~DlAlLkv~~~~~~~~--------~~l~~s~~~~~G~~v~aiG~P~g~~~~vt~G~vs-- 160 (245)
T 3sti_A 92 IQLND-GREFDAKLIGSDDQSDIALLQIQNPSKLTQ--------IAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVS-- 160 (245)
T ss_dssp EECTT-SCEEEEEEEEEETTTTEEEEEESSCCSCCC--------CCBCCGGGCCTTBEEEEEECGGGSCCEEEEEEEE--
T ss_pred EEECC-CCEEEEEEEEecCCCCEEEEEeccCCCCce--------eeecCcCCCCCCCEEEEEECCCCCCCcEEeeEEe--
Confidence 99998 99999999999999999999995 445554 8898877799999999999999986655555555
Q ss_pred ccccccCCCCCCccc-ccceeEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHH
Q 001276 761 CAALNISSADCPRYR-AMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRV 838 (1109)
Q Consensus 761 ~~~~~i~~~~~~~y~-~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~ 838 (1109)
...+..+. ....++|++|+.+++ +|||||+|.+|+||||+++.... +....++.||||++.++++
T Consensus 161 -------~~~~~~~~~~~~~~~i~tda~i~~G~SGGPLvn~~G~vVGI~s~~~~~------~~~~~g~~faIP~~~~~~~ 227 (245)
T 3sti_A 161 -------ALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAP------GGGSVGIGFAIPSNMARTL 227 (245)
T ss_dssp -------ECSSCSSCCTTCSSCEEESSCCCTTTTTSEEECTTSCEEEEEECCC------------CCCEEEEEHHHHHHH
T ss_pred -------eecccccCCCCccCEEEEcCCcCCCcchhHeecCCCeEEEEEEeEECC------CCCcceEEEEEeHHHHHHH
Confidence 22222111 122467999999965 79999999999999999885443 1122344589999999999
Q ss_pred HHHHHcCCC
Q 001276 839 LDKIISGAS 847 (1109)
Q Consensus 839 l~~l~~~~~ 847 (1109)
+++|++.++
T Consensus 228 ~~~l~~~g~ 236 (245)
T 3sti_A 228 AQQLIDFGE 236 (245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHcCC
Confidence 999998875
No 27
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=99.91 E-value=4.1e-23 Score=224.23 Aligned_cols=203 Identities=15% Similarity=0.199 Sum_probs=155.3
Q ss_pred ccccccccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEe
Q 001276 619 SFAESVIEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFL 698 (1109)
Q Consensus 619 ~~~~~~~~~SvV~V~~~~~~~~~~dg~~~~~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~ 698 (1109)
..+++++.+|+|.|.+..+.... .........||||||+ ++|||||| +||+.++..+.|++.+ +..++|++++.
T Consensus 23 ~~~~~~~~~sVV~I~~~~~~~~~-~~~~~~~~~GsG~ii~---~~G~IlTa-aHvv~~~~~~~V~~~~-g~~~~a~vv~~ 96 (237)
T 3lgi_A 23 NLAVRRAAPAVVNVYNRGLNTNS-HNQLEIRTLGSGVIMD---QRGYIITN-KHVINDADQIIVALQD-GRVFEALLVGS 96 (237)
T ss_dssp HHHHHHHGGGEEEEEEECCTTTC-TTSCCEEEEEEEEEEE---TTTEEEEE-HHHHTTCSEEEEECTT-SCEEEEEEEEE
T ss_pred HHHHHHhCCcEEEEEEEecccCc-ccccccceEEEEEEEe---CCCEEEEe-eeecCCCCEEEEEeCC-CCEEEEEEEEE
Confidence 44789999999999998763111 1223345789999999 67899999 5566788899999998 99999999999
Q ss_pred eCCCcEEEEEECCCC-CCcccccceeceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCccc-c
Q 001276 699 HPVHNFALIAYDPSS-LGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYR-A 776 (1109)
Q Consensus 699 dp~~dlAilk~d~~~-l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~-~ 776 (1109)
|+.+||||||++... +++ ++|+++..++.|+.|+++|+|.+.......+.|+.+. +..+. .
T Consensus 97 d~~~DlAll~l~~~~~~~~--------~~l~~~~~~~~G~~v~~~G~p~~~~~~~~~g~vs~~~---------~~~~~~~ 159 (237)
T 3lgi_A 97 DSLTDLAVLKINATGGLPT--------IPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATG---------RIGLNPT 159 (237)
T ss_dssp ETTTTEEEEECCCSSCCCC--------CCCCTTCCCCTTBEEEEEECGGGSCSEEEEEEEEEEC---------CSSCCTT
T ss_pred cCCCCEEEEEecCCCCCce--------EeccCcccCCCCCEEEEEECCCCCCCcEEEEEEEecc---------cccccCC
Confidence 999999999997654 554 7888766789999999999999876655566665221 11111 1
Q ss_pred cceeEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHHHHHHcCCC
Q 001276 777 MNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGAS 847 (1109)
Q Consensus 777 ~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l~~~~~ 847 (1109)
....+|++|+.+.+ +|||||+|.+|+|+||+++..... + .+....++.||||++.+++++++|+++++
T Consensus 160 ~~~~~i~~d~~i~~G~SGGPlv~~~G~vvGI~s~~~~~~--~-~~~~~~g~~~aip~~~i~~~~~~l~~~g~ 228 (237)
T 3lgi_A 160 GRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKS--N-DGETPEGIGFAIPFQLATKIMDKLIRDGR 228 (237)
T ss_dssp SCSCCEEECSCCCTTCTTCEEECTTCCEEEEECCCCCCC--T-TSCCCCSCEEEEEHHHHHHHHHHHHHHSS
T ss_pred CcCCEEEEcCccCCCCchHHeeCCCCeEEEEEeeeeccC--C-CCcCcCceEEEEEHHHHHHHHHHHHHcCC
Confidence 23467899999955 799999999999999998754331 0 01123345589999999999999999987
No 28
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=99.90 E-value=6.2e-24 Score=230.31 Aligned_cols=211 Identities=18% Similarity=0.234 Sum_probs=148.2
Q ss_pred cccccccccEEEEEEEcCccc-------------ccCCc----ccc-eeeEEEEEEEeeCCceEEEEeCceecCCCCcEE
Q 001276 620 FAESVIEPTLVMFEVHVPPSC-------------MIDGV----HSQ-HFFGTGVIIYHSQSMGLVVVDKNTVAISASDVM 681 (1109)
Q Consensus 620 ~~~~~~~~SvV~V~~~~~~~~-------------~~dg~----~~~-~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~ 681 (1109)
.+++++.||||.|.+...... .++.. ... ...||||||+ ++|||||| +||+.++.++.
T Consensus 8 ~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsG~iI~---~~g~ILTn-aHvv~~~~~i~ 83 (239)
T 1l1j_A 8 NVVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGSGFIFD---PEGYILTN-YHVVGGADNIT 83 (239)
T ss_dssp HHHHHHGGGEEEEEEECC--CCCCCHHHHHHHHHHCTTSCTTHHHHEEEEEEEEEEE---TTTEEEEE-HHHHSSCSSCE
T ss_pred HHHHHhCCCEEEEEEEEeecccccccccchhhhhhccccccccccccCceEEEEEEe---CCCEEEEC-hHHhCCCCEEE
Confidence 378889999999998754210 01110 122 5789999999 57899999 55667778899
Q ss_pred EEeecCCeEEeEEEEEeeCCCcEEEEEECC--CCCCcccccceeceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEec
Q 001276 682 LSFAAFPIEIPGEVVFLHPVHNFALIAYDP--SSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTN 759 (1109)
Q Consensus 682 V~~~d~~~~~~a~vv~~dp~~dlAilk~d~--~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~ 759 (1109)
|++.+ ++.++|++++.|+.+||||||++. ..+++ ++|+++..++.|++|+++|+|.+.....+.+.|+.
T Consensus 84 V~~~~-g~~~~a~vv~~d~~~DlAllkl~~~~~~~~~--------~~l~~s~~~~~G~~v~~iG~p~g~~~~vt~Givs~ 154 (239)
T 1l1j_A 84 VTMLD-GSKYDAEYIGGDEELDIAVIKIKASDKKFPY--------LEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSA 154 (239)
T ss_dssp EECTT-SCEEEBCCCEEETTTTEEEEEBCCSSSCCCC--------CEECCGGGCCTTCEEEEEECTTSSSCEEEEEEEEE
T ss_pred EEECC-CCEEEEEEEEEcCCCCEEEEEEcCCCCCCce--------EEecCccCCccccEEEEEECCCCCCCcEEEEEEec
Confidence 99998 999999999999999999999976 34544 88988767899999999999998865555555553
Q ss_pred cccccccCCCCCCcccccceeEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHH
Q 001276 760 PCAALNISSADCPRYRAMNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRV 838 (1109)
Q Consensus 760 i~~~~~i~~~~~~~y~~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~ 838 (1109)
.... +.. ... ......+|++|+++++ +|||||+|.+|+|+||+++.... ....+.+ ||||++.++++
T Consensus 155 ~~r~--~~~--~~~-~~~~~~~i~tda~i~~G~SGGPLv~~~G~vvGI~s~~~~~-----~~~~g~~--faIP~~~~~~~ 222 (239)
T 1l1j_A 155 TNRR--IPK--PDG-SGYYVGLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNP-----QEAVNLG--FAIPINTVKKF 222 (239)
T ss_dssp EEEE--EEC--TTS-SCEEEEEEEESSCCCTTTTTSEEECSSSEEEEEECCCSCC-----CSCCSCE--EEEEHHHHHHH
T ss_pred cccc--ccc--CCC-ccccCCEEEECCCCCCCCccHHhccCCCeEEEEEeeeecC-----CCcCceE--EEEEHHHHHHH
Confidence 2201 000 000 0013468999999865 79999999999999999874322 0123444 88999999999
Q ss_pred HHHHHcCCCCCcccccccccCCCceeeeee
Q 001276 839 LDKIISGASGPSLLINGVKRPMPLVRILEV 868 (1109)
Q Consensus 839 l~~l~~~~~~~~~~~~~v~r~~p~~~~Lgv 868 (1109)
+++|+++++ +.|+ |||+
T Consensus 223 ~~~l~~~g~--------v~r~-----~lGv 239 (239)
T 1l1j_A 223 LDTILTQKK--------VEKA-----YLGV 239 (239)
T ss_dssp HGGGCC------------------------
T ss_pred HHHHHHCCC--------Cccc-----eeCc
Confidence 999998876 7788 8885
No 29
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=99.87 E-value=8.3e-22 Score=212.89 Aligned_cols=195 Identities=23% Similarity=0.217 Sum_probs=145.1
Q ss_pred ccccccccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEe
Q 001276 619 SFAESVIEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFL 698 (1109)
Q Consensus 619 ~~~~~~~~~SvV~V~~~~~~~~~~dg~~~~~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~ 698 (1109)
..+++++.+|+|.|.+.... .+.+.......||||||+ ++||||||+| |+.+...+.|++.+ +..++|++++.
T Consensus 34 ~~~~~~~~~sVV~I~~~~~~--~~~~~~~~~~~GSG~iI~---~~G~VLTaaH-vv~~~~~i~V~~~~-g~~~~a~v~~~ 106 (231)
T 3tjo_A 34 ADVVEKIAPAVVHIELFRKL--PFSKREVPVASGSGFIVS---EDGLIVTNAH-VVTNKHRVKVELKN-GATYEAKIKDV 106 (231)
T ss_dssp HHHHHHHGGGEEEEEEEEEC--TTSSCEEEEEEEEEEECS---TTCEEEEETT-TCCSSSEEEEECTT-SCEEEEEEEEE
T ss_pred HHHHHHhcCcEEEEEEEecc--ccCCCccccceEEEEEEe---CCCEEEEchh-cccCCceEEEEcCC-CCEEEEEEEEe
Confidence 34789999999999987652 223323334789999999 6799999955 55677889999998 99999999999
Q ss_pred eCCCcEEEEEECC-CCCCcccccceeceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCccccc
Q 001276 699 HPVHNFALIAYDP-SSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAM 777 (1109)
Q Consensus 699 dp~~dlAilk~d~-~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~~ 777 (1109)
|+.+||||||++. ..+++ +.|+++..++.|+.|+++|+|.++......+.++... ... ....+...
T Consensus 107 d~~~DlAlL~l~~~~~~~~--------~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~----~~~-~~~~~~~~ 173 (231)
T 3tjo_A 107 DEKADIALIKIDHQGKLPV--------LLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQ----RGG-KELGLRNS 173 (231)
T ss_dssp ETTTTEEEEECCCSSCCCC--------CCBCCGGGCCTTCEEEEEEEEETTEEEEEEEEEEECC----------------
T ss_pred cCCCCEEEEEecCCCCCCc--------eecCCcCCCCCCCEEEEEECCCCCCCceeeEEEeecc----ccc-cccccCCC
Confidence 9999999999974 34544 7887777799999999999999886544455554221 000 00112222
Q ss_pred ceeEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHHHHHHc
Q 001276 778 NMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIIS 844 (1109)
Q Consensus 778 ~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l~~ 844 (1109)
...+|++|+.+.+ +|||||+|.+|+||||+++... .+.+ ||||++.++++|+++++
T Consensus 174 ~~~~i~~da~i~~G~SGGPLv~~~G~vVGI~s~~~~---------~g~~--~aip~~~i~~~l~~~~~ 230 (231)
T 3tjo_A 174 DMDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVT---------AGIS--FAIPSDKIKKFLTESHD 230 (231)
T ss_dssp --CCEEESSCCCTTTTTSEEECTTSCEEEEEEEEEE---------TTEE--EEEEHHHHHHHHHHHHT
T ss_pred cccEEEEcCCcCCCCchhHeecCCCeEEEEEeEEec---------CCeE--EEEEHHHHHHHHHHHhh
Confidence 3467899999954 6999999999999999876432 2344 88999999999999976
No 30
>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Probab=99.81 E-value=2.3e-19 Score=194.80 Aligned_cols=191 Identities=16% Similarity=0.169 Sum_probs=144.2
Q ss_pred cccccccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEee
Q 001276 620 FAESVIEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH 699 (1109)
Q Consensus 620 ~~~~~~~~SvV~V~~~~~~~~~~dg~~~~~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~d 699 (1109)
..++++.+|+|+|....+. ......||||+|+ +||||||+| ++.+..++.|.+.+ ..+++++++.|
T Consensus 35 ~~~~~~~~svV~I~~~~~~-------~~~~~~GsG~iI~----~~~VlTaaH-~v~~~~~~~V~~~~--~~~~~~~v~~~ 100 (237)
T 3k6y_A 35 PVVAATEPSVVKIRSLAPR-------CQKVLEGTGFVIS----PDRVMTNAH-VVAGSNNVTVYAGD--KPFEATVVSYD 100 (237)
T ss_dssp HHHHHHGGGEEEEEEEEGG-------GTEEEEEEEEEEE----TTEEEECGG-GTTTCSEEEEEETT--EEEECEEEEEE
T ss_pred HHHHHhcCCEEEEEEEecC-------CCcceeEEEEEEE----CCEEEECHH-HcCCCceEEEEECC--cEEEEEEEEEc
Confidence 3778999999999887651 1345789999999 689999955 55677889999986 48999999999
Q ss_pred CCCcEEEEEECCCCCCcccccceeceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCcccc---
Q 001276 700 PVHNFALIAYDPSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRA--- 776 (1109)
Q Consensus 700 p~~dlAilk~d~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~--- 776 (1109)
+.+||||||++...+++ ++|+ +..++.|+.++++|+|.+.......+.++.+. .......|..
T Consensus 101 ~~~DiAll~l~~~~~~~--------~~l~-~~~~~~G~~v~v~G~p~g~~~~~~~g~v~~~~-----~~~~~~~~~~~~~ 166 (237)
T 3k6y_A 101 PSVDVAILAVPHLPPPP--------LVFA-AEPAKTGADVVVLGYPGGGNFTATPARIREAI-----RLSGPDIYGDPEP 166 (237)
T ss_dssp TTTTEEEEECTTCCSCC--------CCBC-SSCCCTTCEEEEEECGGGCSCEEEEEEEEEEE-----EEEECCTTCCSSC
T ss_pred CCCCEEEEEeCCCCCCc--------eecC-CCCCCCCCEEEEEECCCCCCCccceeEEEeeE-----eecccccccCCCc
Confidence 99999999998655544 7887 44589999999999998876655555555322 1111112211
Q ss_pred cceeEEEEecccCC-CCCceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHHHHHHcCCC
Q 001276 777 MNMEVIELDTDFGS-TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISGAS 847 (1109)
Q Consensus 777 ~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l~~~~~ 847 (1109)
....++++|+.+.. +|||||+|.+|+|+||+++.... ..+ +.||||++.++++++++.+...
T Consensus 167 ~~~~~~~~~~~~~~GdSGGPLv~~~G~vvGI~s~~~~~-------~~~--~~~aip~~~v~~~l~~~~~~~~ 229 (237)
T 3k6y_A 167 VTRDVYTIRADVEQGDSGGPLIDLNGQVLGVVFGAAID-------DAE--TGFVLTAGEVAGQLAKIGATQP 229 (237)
T ss_dssp EEEEEEEEESCCCTTCTTCEEECTTSCEEEEEEEECSS-------STT--EEEEEEHHHHHGGGGGTTCCSC
T ss_pred ccccEEEecCccCCCccHHHEECCCCEEEEEEEeeccC-------CCc--EEEEEEHHHHHHHHHHccCCCC
Confidence 23468899998844 69999999999999998764322 233 4588999999999999966543
No 31
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=99.81 E-value=2.6e-19 Score=181.52 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=101.2
Q ss_pred CccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecCCeEEEEEEEEEcCCCcEEEEEEcCCCcccccccCCCCCCccCC
Q 001276 66 GASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAAC 145 (1109)
Q Consensus 66 ~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv~~d~~~DlAlLk~~~~~~~~~~l~~l~l~~~~~~ 145 (1109)
..+.||||+| +||||||+|||. +...+.+++ +++.++|+++ .|+.+||||||++...+++ .+++|+.. .
T Consensus 19 ~~~~GSGfii---~g~IlTn~HVV~-~~~~i~V~~-dg~~~~a~vv-~d~~~DlAlLkv~~~~~~~---~~l~l~~~--~ 87 (163)
T 2w5e_A 19 PEGKGTGFFS---GNDIVTAAHVVG-NNTFVNVCY-EGLMYEAKVR-YMPEKDIAFITCPGDLHPT---ARLKLSKN--P 87 (163)
T ss_dssp TTEEEEEEEE---TTEEEEEHHHHT-TCSEEEEEE-TTEEEEEEEE-ECCSSSEEEEECCTTCCCS---CCCCBCSS--C
T ss_pred CceeEEEEEE---CCEEEecHHHhC-CCceEEEEE-CCEEEEEEEE-EECCCCEEEEEecCCCCCc---ceEEcCCC--C
Confidence 3678999999 489999999999 566788888 9999999999 9999999999998765333 23334332 2
Q ss_pred CCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCCcEEEEeccccCCCC
Q 001276 146 VGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSA 225 (1109)
Q Consensus 146 ~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~~~ 225 (1109)
..+.|+++|+|.+. ..++.+ .+... + ..++.++++++|||||||||.+|+||||+++.....+
T Consensus 88 ~~~~v~~~G~p~~~-~~~s~~--~~~~~--------g------~~~~~~a~i~pGnSGGPl~n~~G~VVGI~~~~~g~~g 150 (163)
T 2w5e_A 88 DYSCVTVMAYVNED-LVVSTA--AAMVY--------G------NTLSYAVRTQDGMSGAPVCDKYCRVLAVHQTNTGYTG 150 (163)
T ss_dssp CTTEEEEEEEETTE-EEEEEE--EEEEE--------T------TEEEEECSCSSCCTTCEEECTTSCEEEEEEEEETTEE
T ss_pred CCCEEEEEEeCCCC-EEEEEe--ccEEc--------C------CeEEEEEEeCCCCchhhEEcCCCEEEEEEccCccccc
Confidence 24899999999763 211111 11100 1 1367789999999999999999999999986544444
Q ss_pred Cccccc
Q 001276 226 SAFFLP 231 (1109)
Q Consensus 226 ~~falP 231 (1109)
+|+|.
T Consensus 151 -g~ai~ 155 (163)
T 2w5e_A 151 -GAVII 155 (163)
T ss_dssp -EEEEC
T ss_pred -CEEEe
Confidence 67653
No 32
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=99.76 E-value=5.9e-18 Score=179.83 Aligned_cols=167 Identities=11% Similarity=0.028 Sum_probs=129.8
Q ss_pred CccceEEEEeecCCCHHhhh-ccCC-CEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeeeec
Q 001276 897 VRRQVLRVKGCLAGSKAENM-LEQG-DMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVR 974 (1109)
Q Consensus 897 ~~~~~~~V~~V~~~spA~~a-L~~G-DiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l~v~l~~~ 974 (1109)
...++++|..|.++|||+++ |+.| |+|++|||++|.+|.++...+....++ +.+.++|.|+++...+++++...
T Consensus 13 ~~~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g----~~v~l~v~R~~~~~~~~v~l~p~ 88 (209)
T 3rle_A 13 GGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVE----KPVKMLIYSSKTLELRETSVTPS 88 (209)
T ss_dssp SSSEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSSHHHHHHHHTTT----SCEEEEEEETTTCCEEEEEECCC
T ss_pred CCCCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHHHHHHHHhcCCC----CEEEEEEEecCCceEEEEEEccc
Confidence 34578899999999999999 9999 999999999999999988777555554 88999999976444444444322
Q ss_pred CCCCcceEEeecCccccCCchhhhhccCCCCCCCcEEEEEecCCChhhhcCCCC-CCeEEEECCeeCCCHHHHHHHHHhC
Q 001276 975 DGNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYA-LQWIVEINGKRTPDLEAFVNVTKEI 1053 (1109)
Q Consensus 975 ~~~~t~~~~~~~G~~~~~p~~~~r~~~~lp~~~~gV~V~~v~~gSPA~~~GL~~-gD~I~~VNg~~v~~l~~f~~~l~~~ 1053 (1109)
... ....++|+.++........ ..|++|..|.++|||+++||++ ||.|++|||+ +.++++|.+++++.
T Consensus 89 ~~~---~~~~~lGi~~~~~~~~~~~-------~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~~~l~~~l~~~ 157 (209)
T 3rle_A 89 NLW---GGQGLLGVSIRFCSFDGAN-------ENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNESEDLFSLIETH 157 (209)
T ss_dssp SSS---SSSSSSCEEEEEEECTTGG-------GSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSSSCHHHHHHHT
T ss_pred ccc---cccCccceEEeecChhHcc-------ccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCHHHHHHHHHhC
Confidence 110 0124677777643321111 1389999999999999999999 9999999998 99999999999997
Q ss_pred CCCceEEEEEEEeCC--eEEEEEEeeCCc
Q 001276 1054 EHGEFVRVRTVHLNG--KPRVLTLKQDLH 1080 (1109)
Q Consensus 1054 ~~~~~v~l~~v~rdg--~~~~i~lk~~~~ 1080 (1109)
+++.+.|+ +.|++ ..+.++++++.+
T Consensus 158 -~g~~v~l~-v~r~~~~~~~~v~l~p~~~ 184 (209)
T 3rle_A 158 -EAKPLKLY-VYNTDTDNCREVIITPNSA 184 (209)
T ss_dssp -TTSCEEEE-EEETTTTEEEEEEECCCTT
T ss_pred -CCCeEEEE-EEECCceEEEEEEEEecCC
Confidence 68999999 56654 568888888654
No 33
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}
Probab=99.73 E-value=8.5e-18 Score=178.98 Aligned_cols=179 Identities=21% Similarity=0.200 Sum_probs=129.0
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCC--eEEEEEe----cCCeEEEEE-EEEEcCCCcE
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGP--VVAEAMF----VNREEIPVY-PIYRDPVHDF 119 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~--~~~~v~~----~~~~~~~a~-vv~~d~~~Dl 119 (1109)
+++|+|......+|... .....||||+|++ ++||||+||+.+.. ..+.+.+ .+++.+.++ ++.+|+..||
T Consensus 3 ~~~~~i~~~~~~P~~v~-~~~~~c~G~lI~~--~~VLTaaHcv~~~~~~~~i~v~~~~~~~~g~~~~~~~v~~~~~~~Di 79 (210)
T 2as9_A 3 KNVTQVKDTNNFPYNGV-VSFKDATGFVIGK--NTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDI 79 (210)
T ss_dssp CCEEECSCTTSTTGGGE-EECSSCEEEEEET--TEEEECHHHHHHCCTTCEEEESCCGGGCCSCEEEEEEEEECSSSSSC
T ss_pred CceEEeecCCcCCeEEE-EEeeeEEEEEEeC--CEEEECHhHCCccCCCCEEEEEeCcccCCCCEEEEEEEEeCCCCCcE
Confidence 34555544333333221 1135799999995 69999999996332 2566653 477888884 8889999999
Q ss_pred EEEEEcCCCc-------ccc-cccCCCCCCccCCCCCEEEEEecCCCCCC----eEEEEEEEEecCCCCCCCCCCccccc
Q 001276 120 GFFRYDPSAI-------QFL-NYDEIPLAPEAACVGLEIRVVGNDSGEKV----SILAGTLARLDRDAPHYKKDGYNDFN 187 (1109)
Q Consensus 120 AlLk~~~~~~-------~~~-~l~~l~l~~~~~~~G~~V~~iG~p~g~~~----si~~G~vs~~~~~~~~~~~~~~~~~~ 187 (1109)
||||++...+ .+- .+.+++|. ..+.+|+.++++|+|.+... .+..|+++....
T Consensus 80 All~l~~~~~~~~~~~~~~~~~v~~i~l~-~~~~~g~~v~v~G~p~~~~~~~~l~~~~g~v~~~~~-------------- 144 (210)
T 2as9_A 80 SVMNIEEQAVERGPKGFNFNENVQAFNFA-KDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKD-------------- 144 (210)
T ss_dssp EEEEECSEEEEEETTEEEGGGSCCCCCBC-SCCCTTCEEEEEECSSTTTTTSCCEEEEEEEEEEET--------------
T ss_pred EEEEecCccccccccccccccccceeecC-CCCCCCCEEEEEeCCCCCCCCcceEEeeeEEccccC--------------
Confidence 9999986422 110 23455554 46789999999999976543 347788887631
Q ss_pred eeeEEEeeccCCCCCCCceecCCCcEEEEeccccCC---CCCccccchHHHHHHHHHHHh
Q 001276 188 TFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS---SASAFFLPLERVVRALRFLQE 244 (1109)
Q Consensus 188 ~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~---~~~~falP~~~i~~~l~~l~~ 244 (1109)
.++++++.+.+|+|||||+|.+|+||||++.+... ...+|++|.+.++++++..+.
T Consensus 145 -~~i~~~~~~~~GdSGGPlv~~~g~lvGI~s~g~~~~~~~~~~~~~~~~~i~~f~~~~~~ 203 (210)
T 2as9_A 145 -NILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIE 203 (210)
T ss_dssp -TEEEEECCCCTTCTTCEEECTTSCEEEEECCSCCCTTCSSEEEEECCHHHHHHHHTTCC
T ss_pred -CeEEEcCccCCCCccCcEECCCCeEEEEEecccccCCccccccEEEcHHHHHHHHHhhh
Confidence 14788999999999999999999999999887653 345799999999999986543
No 34
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=99.72 E-value=3e-17 Score=174.38 Aligned_cols=151 Identities=21% Similarity=0.164 Sum_probs=123.1
Q ss_pred CCCceEEEEEecCCCcccc-CCCCC-CEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEECCEEEEEEEEeecCCCCC
Q 001276 295 GETGLLVVDSVVPGGPAHL-RLEPG-DVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIERGGISMTVNLVVQDLHSIT 371 (1109)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-gL~~G-D~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~ 371 (1109)
...|++| ..|.++|||++ ||++| |+|++|||+++.+|.++...+ ...+|+.++|+|.|++...+.++++.....
T Consensus 14 ~~~G~~V-~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~p~~~-- 90 (209)
T 3rle_A 14 GTEGYHV-LRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNL-- 90 (209)
T ss_dssp SSEEEEE-EEECTTSHHHHTTCCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEETTTCCEEEEEECCCSS--
T ss_pred CCCEEEE-EEECCCCHHHHCCCCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEecCCceEEEEEEccccc--
Confidence 4678887 69999999999 99999 999999999999999987655 557899999999997655555555532211
Q ss_pred CCccccccceEEecCCHHHhhccCCCCCeEEEE--cCCChhHHcCCCC-CCEEEEcCCeecCCHHHHHHHHHhcCCCCeE
Q 001276 372 PDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVA--EPGYMLFRAGVPR-HAIIKKFAGEEISRLEDLISVLSKLSRGARV 448 (1109)
Q Consensus 372 ~~~~~~~~G~~~~~l~~~~~~~~~~~~~gv~v~--~pg~~a~~aGl~~-GD~I~~Vng~~v~~l~~~~~~i~~~~~g~~v 448 (1109)
.......|+.+.+++++.... .|++|. .++|||++|||++ ||+|++|||+ +.++++|.++++.. .|+++
T Consensus 91 -~~~~~~lGi~~~~~~~~~~~~-----~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~~~l~~~l~~~-~g~~v 162 (209)
T 3rle_A 91 -WGGQGLLGVSIRFCSFDGANE-----NVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNESEDLFSLIETH-EAKPL 162 (209)
T ss_dssp -SSSSSSSCEEEEEEECTTGGG-----SCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSSSCHHHHHHHT-TTSCE
T ss_pred -ccccCccceEEeecChhHccc-----cceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCHHHHHHHHHhC-CCCeE
Confidence 112457899888777654443 578887 4899999999999 9999999998 99999999999997 78999
Q ss_pred eEEEEeec
Q 001276 449 PIEYSSYT 456 (1109)
Q Consensus 449 ~l~~~~~~ 456 (1109)
.|++.|-.
T Consensus 163 ~l~v~r~~ 170 (209)
T 3rle_A 163 KLYVYNTD 170 (209)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 99998854
No 35
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...
Probab=99.68 E-value=1.4e-16 Score=167.27 Aligned_cols=157 Identities=19% Similarity=0.243 Sum_probs=118.4
Q ss_pred EEEEEEEeC-CCcEEEeCccccCCCCeEEEEEecCCeEEEEEEEEEc-CCCcEEEEEEcCCCc--ccccc--cCCCCC-C
Q 001276 69 YATGFVVDK-RRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRD-PVHDFGFFRYDPSAI--QFLNY--DEIPLA-P 141 (1109)
Q Consensus 69 ~GSGfvV~~-~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv~~d-~~~DlAlLk~~~~~~--~~~~l--~~l~l~-~ 141 (1109)
-.+||++.. ..+|||||.||+..+ ..+. .++ .+.++++..| |..|+|+||++.... +.+.. ..+++. .
T Consensus 17 CT~Gf~v~~~~~~~ilTa~Hc~~~~-~~v~---~~~-~~~g~vv~~~~~~~D~Avi~i~~~~~~~~~v~~~g~~~~v~g~ 91 (198)
T 2h5c_A 17 CSVGFSVTRGATKGFVTAGHCGTVN-ATAR---IGG-AVVGTFAARVFPGNDRAWVSLTSAQTLLPRVANGSSFVTVRGS 91 (198)
T ss_dssp EECCEEEEETTEEEEEECGGGCCTT-CEEE---ETT-EEEEEEEEEECSBSCEEEEEECTTSEEEEEEEETTEEEECCBC
T ss_pred CCcCEEEecCCeeEEEECcccCCCC-CEEE---eCC-cEEEEEEecCCCCCCEEEEEeCCCCccCceEecCCceEEecCc
Confidence 458999964 136999999999854 3343 454 8889999999 999999999987531 22111 001222 5
Q ss_pred ccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCCcEEEEecccc
Q 001276 142 EAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 142 ~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
..+++|++|..+|+|.+ .++|+|+.+++... |....+ ..++|+++.+.+|+|||||+|.+|++|||++++.
T Consensus 92 ~~~~vG~~V~~~G~~tg----~t~G~V~~~~~~~~-~~~g~~----~~~i~t~~~~~~GDSGGPl~~~~g~~vGI~s~~~ 162 (198)
T 2h5c_A 92 TEAAVGAAVCRSGRTTG----YQCGTITAKNVTAN-YAEGAV----RGLTQGNACMGRGDSGGSWITSAGQAQGVMSGGN 162 (198)
T ss_dssp CCCCTTCEEEEEETTTE----EEEEEEEEEEEEEE-ETTEEE----EEEEEECSCCBTTCTTCEEECTTCBEEEEEEEEC
T ss_pred ccCCCCCeEEEeecCcc----eEEEEEEeeeeEEE-eCCCeE----eeeEEecccCCCCcceeEEEeeCCEEEEEEEeec
Confidence 67899999999999987 58999999988542 221111 2469999999999999999999999999998874
Q ss_pred -----C------CCCCccccchHHHHHHH
Q 001276 222 -----S------SSASAFFLPLERVVRAL 239 (1109)
Q Consensus 222 -----~------~~~~~falP~~~i~~~l 239 (1109)
. ..+..|++|++.+++.+
T Consensus 163 ~~~~~~~c~~~~~~g~~f~~Pi~~vl~~~ 191 (198)
T 2h5c_A 163 VQSNGNNCGIPASQRSSLFERLQPILSQY 191 (198)
T ss_dssp CCTTSBSTTSCGGGCCEEEEEHHHHHHHH
T ss_pred CccCCCccccccCCceEEEEEHHHHHHHC
Confidence 1 12588999999988775
No 36
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.66 E-value=2.2e-15 Score=158.12 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=117.5
Q ss_pred cceEEEEeecCCCHHhhh--ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCC--EEEEEEEeeeec
Q 001276 899 RQVLRVKGCLAGSKAENM--LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQG--REIELQVGTDVR 974 (1109)
Q Consensus 899 ~~~~~V~~V~~~spA~~a--L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g--~~~~l~v~l~~~ 974 (1109)
..+++|..|.++|||+++ |+.||+|++|||+++.+|.++.........+ +.+.++|.|++ ....+.+.+...
T Consensus 34 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g----~~v~l~v~r~~~~~~~~~~v~l~~~ 109 (196)
T 3gsl_A 34 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG----SIVRLYVMRRKPPAEKVMEIKLIKG 109 (196)
T ss_dssp CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSC----SEEEEEEEEECCCCEEEEEEEEEEB
T ss_pred CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC----CcEEEEEEecCCCccccEEEEEecC
Confidence 357889999999999987 9999999999999999998877665444444 88999999987 555566665544
Q ss_pred CCCCcceEEeecCccccCCchhhhhccCCCCCCCcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHH
Q 001276 975 DGNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTK 1051 (1109)
Q Consensus 975 ~~~~t~~~~~~~G~~~~~p~~~~r~~~~lp~~~~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~ 1051 (1109)
.. -+|+.+..... ....+ ...+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++
T Consensus 110 ~~--------~lG~~~~~~~~----~~~~~-~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 176 (196)
T 3gsl_A 110 PK--------GLGFSIAGGVG----NQHIP-GDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK 176 (196)
T ss_dssp TT--------BSCEEEEESBT----SCSBT-TBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHH
T ss_pred CC--------CceEEEEccCC----CcCCC-CCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHH
Confidence 32 13444432210 00011 12379999999999999999 99999999999999999 999999998
Q ss_pred hCCCCceEEEEEEEeCCeEE
Q 001276 1052 EIEHGEFVRVRTVHLNGKPR 1071 (1109)
Q Consensus 1052 ~~~~~~~v~l~~v~rdg~~~ 1071 (1109)
+ .++.+.|+ +.|++...
T Consensus 177 ~--~~~~v~l~-v~R~~~~~ 193 (196)
T 3gsl_A 177 N--TYDVVYLK-VAKPSNAE 193 (196)
T ss_dssp S--CCEEEEEE-EEEESCCC
T ss_pred c--CCCeEEEE-EeCCCCcc
Confidence 6 37889998 77877643
No 37
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=99.66 E-value=1.1e-16 Score=157.60 Aligned_cols=123 Identities=24% Similarity=0.379 Sum_probs=107.3
Q ss_pred CCCccccchHHHHHHHHHHHhcCCcccccccccccCCCccceEEEEcCh---hHHHHcCCChhHHHhhhcCCCCCCCceE
Q 001276 224 SASAFFLPLERVVRALRFLQERRDCNIHNWEAVSIPRGTLQVTFVHKGF---DETRRLGLQSATEQMVRHASPPGETGLL 300 (1109)
Q Consensus 224 ~~~~falP~~~i~~~l~~l~~~~~~~~~~~~~~~v~rg~lg~~~~~~~~---~~~r~lGl~~~~~~~~~~~~~~~~~G~l 300 (1109)
.|++||||++.+++++++|.+++ .+.|+|||+.++.... +.++.||++.. ...|++
T Consensus 2 ~GigFAIP~~~~~~v~~~L~~~G----------~v~r~~LGv~~~~~~~~~~~~~~~lgl~~~-----------~~~g~~ 60 (134)
T 2l97_A 2 EGLGFAIPANDAINIIEQLEKNG----------KVTRPALGIQMVNLSNVSTSDIRRLNIPSN-----------VTSGVI 60 (134)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCC----------CSSCCCCCCEEEESSSSCHHHHHHHSSCSS-----------SCSCEE
T ss_pred CcEEEEeEHHHHHHHHHHHHHcC----------CEeeeEeeEEEEECCchhHHHHHHcCCCcC-----------CCCCEE
Confidence 47899999999999999999888 7899999999998765 67888998721 246777
Q ss_pred EEEEecCCCccccCCCCCCEEEEECCEEeCChhHHHHHHhc-CCCCeEEEEEEECCEEEEEEEEeecCC
Q 001276 301 VVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDD-GVDKNIELLIERGGISMTVNLVVQDLH 368 (1109)
Q Consensus 301 Vv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l~~~l~~-~~g~~v~l~v~R~g~~~~~~v~l~~~~ 368 (1109)
| ..|.++|||+.||++||+|++|||+++.++.++...+.. .+|+.++|+|.|+|+.+++++++...+
T Consensus 61 V-~~V~~~spA~aGL~~GD~I~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~ 128 (134)
T 2l97_A 61 V-RSVQSNMPANGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLNKLE 128 (134)
T ss_dssp E-EECSTTSGGGTTSCSSCEEEEETTEECCCHHHHHHHHHHSSTTCEEEEEEEETTEEEEEEEECCCC-
T ss_pred E-EEECCCCchHHCCCCCCEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEcccC
Confidence 6 699999999989999999999999999999999988865 489999999999999999999887654
No 38
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=99.63 E-value=3.6e-15 Score=151.13 Aligned_cols=126 Identities=14% Similarity=0.076 Sum_probs=94.0
Q ss_pred ceeeEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEeeCCCcEEEEEECCCCCCcccccceeceec
Q 001276 648 QHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLHPVHNFALIAYDPSSLGVAGASVVRAAEL 727 (1109)
Q Consensus 648 ~~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~dp~~dlAilk~d~~~l~~~~~~~v~~~~l 727 (1109)
....||||+| +|||||| +||+.++..+.|++ + ++.++|+++ .|+.+||||||++...++. .+++|
T Consensus 19 ~~~~GSGfii-----~g~IlTn-~HVV~~~~~i~V~~-d-g~~~~a~vv-~d~~~DlAlLkv~~~~~~~------~~l~l 83 (163)
T 2w5e_A 19 PEGKGTGFFS-----GNDIVTA-AHVVGNNTFVNVCY-E-GLMYEAKVR-YMPEKDIAFITCPGDLHPT------ARLKL 83 (163)
T ss_dssp TTEEEEEEEE-----TTEEEEE-HHHHTTCSEEEEEE-T-TEEEEEEEE-ECCSSSEEEEECCTTCCCS------CCCCB
T ss_pred CceeEEEEEE-----CCEEEec-HHHhCCCceEEEEE-C-CEEEEEEEE-EECCCCEEEEEecCCCCCc------ceEEc
Confidence 3468999999 3699999 55677888899999 6 999999999 8999999999998765432 33678
Q ss_pred CCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCcccccceeEEEEecccCC-CCCceEEcCCeeEEEE
Q 001276 728 LPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFGS-TFSGVLTDEHGRVQAI 806 (1109)
Q Consensus 728 ~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi 806 (1109)
+++. ..+.|+++|+|.+. +.. ..+ .+.+ .-..++.++++++ ||||||+|.+|+||||
T Consensus 84 ~~~~---~~~~v~~~G~p~~~-~~~---s~~----~~~~-----------~g~~~~~~a~i~pGnSGGPl~n~~G~VVGI 141 (163)
T 2w5e_A 84 SKNP---DYSCVTVMAYVNED-LVV---STA----AAMV-----------YGNTLSYAVRTQDGMSGAPVCDKYCRVLAV 141 (163)
T ss_dssp CSSC---CTTEEEEEEEETTE-EEE---EEE----EEEE-----------ETTEEEEECSCSSCCTTCEEECTTSCEEEE
T ss_pred CCCC---CCCEEEEEEeCCCC-EEE---EEe----ccEE-----------cCCeEEEEEEeCCCCchhhEEcCCCEEEEE
Confidence 7764 24899999999763 211 111 1111 0123566788855 7999999999999999
Q ss_pred Eeec
Q 001276 807 WGSF 810 (1109)
Q Consensus 807 ~~~~ 810 (1109)
+++.
T Consensus 142 ~~~~ 145 (163)
T 2w5e_A 142 HQTN 145 (163)
T ss_dssp EEEE
T ss_pred EccC
Confidence 8763
No 39
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.63 E-value=3.8e-15 Score=156.33 Aligned_cols=148 Identities=15% Similarity=0.156 Sum_probs=113.4
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEECC--EEEEEEEEeecCCCC
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIERGG--ISMTVNLVVQDLHSI 370 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~v~R~g--~~~~~~v~l~~~~~~ 370 (1109)
..|++| ..|.|+|||++ | |++||+|++|||+++.+|.++.... ....|+.+.|++.|++ ....+++.+.....
T Consensus 34 ~~g~~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~~~~~v~l~~~~~- 111 (196)
T 3gsl_A 34 DPSIFI-TKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPK- 111 (196)
T ss_dssp CCCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEEECCCCEEEEEEEEEEBTT-
T ss_pred CCCEEE-EEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCCCccccEEEEEecCCC-
Confidence 467777 79999999999 9 9999999999999999998777554 4567899999999977 45566666654431
Q ss_pred CCCccccccceEEecCCHHHhhccCCCCCeEEEEc--CCChhHHcC-CCCCCEEEEcCCeecCC--HHHHHHHHHhcCCC
Q 001276 371 TPDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVAE--PGYMLFRAG-VPRHAIIKKFAGEEISR--LEDLISVLSKLSRG 445 (1109)
Q Consensus 371 ~~~~~~~~~G~~~~~l~~~~~~~~~~~~~gv~v~~--pg~~a~~aG-l~~GD~I~~Vng~~v~~--l~~~~~~i~~~~~g 445 (1109)
-.|+.+........ + ....|++|.+ |+|+|+++| |++||+|++|||+++.+ ++++++.++. .+
T Consensus 112 -------~lG~~~~~~~~~~~--~-~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--~~ 179 (196)
T 3gsl_A 112 -------GLGFSIAGGVGNQH--I-PGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN--TY 179 (196)
T ss_dssp -------BSCEEEEESBTSCS--B-TTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHS--CC
T ss_pred -------CceEEEEccCCCcC--C-CCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHc--CC
Confidence 24666554221100 0 0125788884 999999999 99999999999999999 9999999986 36
Q ss_pred CeEeEEEEeecc
Q 001276 446 ARVPIEYSSYTD 457 (1109)
Q Consensus 446 ~~v~l~~~~~~~ 457 (1109)
+.+.|++.|-..
T Consensus 180 ~~v~l~v~R~~~ 191 (196)
T 3gsl_A 180 DVVYLKVAKPSN 191 (196)
T ss_dssp EEEEEEEEEESC
T ss_pred CeEEEEEeCCCC
Confidence 677777776543
No 40
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.61 E-value=5.4e-15 Score=155.50 Aligned_cols=145 Identities=21% Similarity=0.279 Sum_probs=116.3
Q ss_pred ceEEEEeecCCCHHhhh--ccCCCEEEEECCEEcC--ChhHHHHHHHhccCCCCCCCeEEEEEEeCCEE--------EEE
Q 001276 900 QVLRVKGCLAGSKAENM--LEQGDMMLAINKQPVT--CFHDIENACQALDKDGEDNGKLDITIFRQGRE--------IEL 967 (1109)
Q Consensus 900 ~~~~V~~V~~~spA~~a--L~~GDiIlsVnG~~V~--~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~--------~~l 967 (1109)
.+++|..|.++|||+++ |+.||+|++|||+++. +|.++..++....++ +.+.++|.|+|+. .++
T Consensus 36 ~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g----~~v~l~v~R~~~~~~~~~~~~~~v 111 (196)
T 1p1d_A 36 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSIT----SKVTLEIEFDVAESVIPSSGTFHV 111 (196)
T ss_dssp CSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSS----SEEEEEEEECSCSCCBCCSSCEEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC----CeEEEEEEecCCCCCCCCCCcEEE
Confidence 45779999999999987 9999999999999999 689999888655544 7899999999853 233
Q ss_pred EEeeeecCCCCcceEEeecCccccCCchhhhhccCCCCCCCcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HH
Q 001276 968 QVGTDVRDGNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LE 1044 (1109)
Q Consensus 968 ~v~l~~~~~~~t~~~~~~~G~~~~~p~~~~r~~~~lp~~~~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~ 1044 (1109)
.++ .. ....+|+.+..+... .+ ..+++|..|.++|||+++| |++||+|++|||+++.+ ++
T Consensus 112 ~l~--~~-------~~~~lG~~~~~~~~~------~~--~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~ 174 (196)
T 1p1d_A 112 KLP--KK-------HSVELGITISSPSSR------KP--GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSME 174 (196)
T ss_dssp EEC--CC-------SSCCCCCEEECSCSS------ST--TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHH
T ss_pred Eec--CC-------CCCCcCEEEECCCCC------CC--CCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHH
Confidence 332 10 112357777665421 01 2378999999999999999 99999999999999999 99
Q ss_pred HHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1045 AFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1045 ~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
+|.+++++. ++.+.|+ +.|++
T Consensus 175 ~~~~~l~~~--~~~v~l~-v~R~~ 195 (196)
T 1p1d_A 175 DAVQILQQC--EDLVKLK-IRKDE 195 (196)
T ss_dssp HHHHHHHHC--TTCEEEE-EECCC
T ss_pred HHHHHHHhC--CCEEEEE-EEeCC
Confidence 999999984 8889998 77775
No 41
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A
Probab=99.60 E-value=2.1e-15 Score=159.10 Aligned_cols=155 Identities=21% Similarity=0.250 Sum_probs=110.2
Q ss_pred cEEEEEEEeCCCcEEEeCccccCCCC---eEEEEEe----cCCeEEEE-EEEEEcCCCcEEEEEEcCCCcccc----ccc
Q 001276 68 SYATGFVVDKRRGIILTNRHVVKPGP---VVAEAMF----VNREEIPV-YPIYRDPVHDFGFFRYDPSAIQFL----NYD 135 (1109)
Q Consensus 68 ~~GSGfvV~~~~G~IlTn~HVv~~~~---~~~~v~~----~~~~~~~a-~vv~~d~~~DlAlLk~~~~~~~~~----~l~ 135 (1109)
..|+||+|++ ++||||+||+.... ..+.+.+ .+++.+.+ +++.+|+.+||||||++...++.+ .+.
T Consensus 22 ~~c~G~lI~~--~~VLTaaHcv~~~~~~~~~v~v~~~~~~~~~~~~~~~~i~~~~~~~DiAll~l~~~~~~~~~~~~~v~ 99 (200)
T 2w7s_A 22 VGGTGVVVGK--NTIVTNKHIAKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKEDLAIVHVHETSTEGLNFNKNVS 99 (200)
T ss_dssp TTEEEEEEET--TEEEECHHHHHHHHHTTCCEEETCCSSSCCCCEECEEEEEECSSSSSCEEEEECSBCTTSCBGGGSCC
T ss_pred ceEEEEEEEC--CEEEEChhhcCCcccCCcEEEEEecCccCCCcEEEEEEEecCCCcceEEEEEECCCCCCccccccccc
Confidence 4699999995 69999999996321 2355543 46777887 578889999999999987532222 245
Q ss_pred CCCCCCccCCCCCEEEEEecCCCCCC----eEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCC
Q 001276 136 EIPLAPEAACVGLEIRVVGNDSGEKV----SILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQG 211 (1109)
Q Consensus 136 ~l~l~~~~~~~G~~V~~iG~p~g~~~----si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G 211 (1109)
+++|. ..+..|+.++++|+|.+... .+..|.++.... .++++++.+.+|+|||||+|.+|
T Consensus 100 pi~l~-~~~~~g~~v~v~G~p~g~~~~~~~~~~~g~v~~~~~---------------~~~~~~~~~~~GdSGGPl~~~~g 163 (200)
T 2w7s_A 100 YTKFA-DGAKVKDRISVIGYPKGAQTKYKMFESTGTINHISG---------------TFMEFDAYAQPGNSGSPVLNSKH 163 (200)
T ss_dssp CCCBC-CCCCTTCEEEEEECTTHHHHTSCEEEEEEEEEEEET---------------TEEEECSCCCTTCTTCEEECTTS
T ss_pred ceecc-ccCCCCCEEEEEECCCCCCCccceEEeEEEEEccCC---------------CEEEEcceeCCCCccCeEECcCC
Confidence 56664 46789999999999976432 346777776521 13788889999999999999999
Q ss_pred cEEEEeccccCC--CCCcccc-chHHHHHHHH
Q 001276 212 RAVALNAGSKSS--SASAFFL-PLERVVRALR 240 (1109)
Q Consensus 212 ~vVGi~~~~~~~--~~~~fal-P~~~i~~~l~ 240 (1109)
++|||++.+... ...+|.+ +...++.+++
T Consensus 164 ~lvGI~s~g~~~~~~~~~~~v~~~~~~~~wI~ 195 (200)
T 2w7s_A 164 ELIGILYAGSGKDESEKNFGVYFTPQLKEFIQ 195 (200)
T ss_dssp CEEEEEEEEC----CCCEEEEECCHHHHHHHH
T ss_pred EEEEEEeccccCCCCccceeeecHHHHHHHHH
Confidence 999999887543 2345554 3355555554
No 42
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.59 E-value=6.3e-15 Score=155.00 Aligned_cols=144 Identities=19% Similarity=0.264 Sum_probs=114.0
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcC-CCCeEEEEEEECCEEE------EEEEEe
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDG-VDKNIELLIERGGISM------TVNLVV 364 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~-~g~~v~l~v~R~g~~~------~~~v~l 364 (1109)
..+++| ..|.++|||++ | |++||+|++|||+++. +|.++..++... +|+.++|+|.|+++.. ..++.+
T Consensus 35 ~~~~~V-~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~~~~~~~~~v~l 113 (196)
T 1p1d_A 35 SSPPLI-SYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKL 113 (196)
T ss_dssp SCSEEE-EECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEEECSCSCCBCCSSCEEEEE
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecCCCCCCCCCCcEEEEe
Confidence 356666 79999999999 9 9999999999999999 689999888664 4899999999998532 233333
Q ss_pred ecCCCCCCCccccccceEEecCCHHHhhccCCCCCeEEEEc--CCChhHHcC-CCCCCEEEEcCCeecCC--HHHHHHHH
Q 001276 365 QDLHSITPDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVAE--PGYMLFRAG-VPRHAIIKKFAGEEISR--LEDLISVL 439 (1109)
Q Consensus 365 ~~~~~~~~~~~~~~~G~~~~~l~~~~~~~~~~~~~gv~v~~--pg~~a~~aG-l~~GD~I~~Vng~~v~~--l~~~~~~i 439 (1109)
.. ......|+.+...+... ...|++|.+ ++++|+++| |++||+|++|||+++.+ +++|.+++
T Consensus 114 ~~-------~~~~~lG~~~~~~~~~~------~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l 180 (196)
T 1p1d_A 114 PK-------KHSVELGITISSPSSRK------PGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQIL 180 (196)
T ss_dssp CC-------CSSCCCCCEEECSCSSS------TTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHH
T ss_pred cC-------CCCCCcCEEEECCCCCC------CCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 22 11234588877654421 125788884 899999999 99999999999999999 99999999
Q ss_pred HhcCCCCeEeEEEEee
Q 001276 440 SKLSRGARVPIEYSSY 455 (1109)
Q Consensus 440 ~~~~~g~~v~l~~~~~ 455 (1109)
++. ++.+.|++.|-
T Consensus 181 ~~~--~~~v~l~v~R~ 194 (196)
T 1p1d_A 181 QQC--EDLVKLKIRKD 194 (196)
T ss_dssp HHC--TTCEEEEEECC
T ss_pred HhC--CCEEEEEEEeC
Confidence 985 77888877764
No 43
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A
Probab=99.59 E-value=3e-15 Score=162.87 Aligned_cols=160 Identities=20% Similarity=0.253 Sum_probs=111.6
Q ss_pred ccEEEEEEEeCCCcEEEeCccccCCCCe-EEEEEecCC-------------eEEEEEEEEEcC---CCcEEEEEEcCCCc
Q 001276 67 ASYATGFVVDKRRGIILTNRHVVKPGPV-VAEAMFVNR-------------EEIPVYPIYRDP---VHDFGFFRYDPSAI 129 (1109)
Q Consensus 67 ~~~GSGfvV~~~~G~IlTn~HVv~~~~~-~~~v~~~~~-------------~~~~a~vv~~d~---~~DlAlLk~~~~~~ 129 (1109)
...|+||+|++ ++||||+||+..... .+.+.+.+| ..+.++.+..|+ .+||||||++....
T Consensus 54 ~~~c~G~lI~~--~~VLTAaHcv~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~DiAll~l~~~~~ 131 (242)
T 1agj_A 54 QTSATGVLIGK--NTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPFGAGVDLALIRLKPDQN 131 (242)
T ss_dssp TEEEEEEECSS--SEEEECHHHHGGGTTCGGGEEEEETCEECTTSCEECTTCCEEEEEEESCTTCTTSCCEEEEECCCTT
T ss_pred CccEEEEEEeC--CEEEEChhhcccCCCCceEEEEecCccccccccccccCCceeEEEEEeCCCCCCCcEEEEEEcCCCc
Confidence 46899999984 699999999974221 133444332 357889999998 89999999986521
Q ss_pred --cc-ccccCCCCC-CccCCCCCEEEEEecCCCCCCe-EEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCCC
Q 001276 130 --QF-LNYDEIPLA-PEAACVGLEIRVVGNDSGEKVS-ILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGS 204 (1109)
Q Consensus 130 --~~-~~l~~l~l~-~~~~~~G~~V~~iG~p~g~~~s-i~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGg 204 (1109)
++ ..+.+++|. ...+..|+.++++|+|.+...+ +....+... .+.. .+++++.+.+|+|||
T Consensus 132 ~~~~~~~v~~i~L~~~~~~~~g~~~~v~Gwg~~~~~~~l~~~~~~~~----------~~~~----~~~~~~~~c~GdSGG 197 (242)
T 1agj_A 132 GVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKVNQMHRSEIELT----------TLSR----GLRYYGFTVPGNSGS 197 (242)
T ss_dssp SCCHHHHSCCCEECCSTTCCTTCEEEEEECCTTTSTTCCEEEEEEEC----------CGGG----SEEEECCCCGGGTTC
T ss_pred cccccccccceecCccccCCCCCEEEEEeCCCCCCCccceeeeeeEe----------cCCc----eEEEeCCcCCCCCch
Confidence 00 023444443 3467899999999999876532 222222211 1111 267888999999999
Q ss_pred ceecCCCcEEEEeccccCC----CCCccccchH-HHHHHHHHH
Q 001276 205 PVIDWQGRAVALNAGSKSS----SASAFFLPLE-RVVRALRFL 242 (1109)
Q Consensus 205 Pv~n~~G~vVGi~~~~~~~----~~~~falP~~-~i~~~l~~l 242 (1109)
||+|.+|+||||++.+... .+.+|++|++ .++++|++.
T Consensus 198 Pl~~~~g~lvGI~s~g~~c~~~~~~~~~~~~i~~~~~~~l~~~ 240 (242)
T 1agj_A 198 GIFNSNGELVGIHSSKVSHLDREHQINYGVGIGNYVKRIINEK 240 (242)
T ss_dssp EEECTTSEEEEEEEEEEECSSTTCEEEEEEECCHHHHHHHHHH
T ss_pred HhcccCCEEEEEEeccccccCcCCCceeeEEehHHHHHHHHhh
Confidence 9999999999999876542 4578999985 777777654
No 44
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.58 E-value=4.9e-15 Score=151.54 Aligned_cols=116 Identities=24% Similarity=0.265 Sum_probs=91.6
Q ss_pred ceEEEEeecCCCHHhhh-ccCCCEEEEECCEEcCChhH-HHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeeeecCCC
Q 001276 900 QVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHD-IENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRDGN 977 (1109)
Q Consensus 900 ~~~~V~~V~~~spA~~a-L~~GDiIlsVnG~~V~~~~d-l~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l~v~l~~~~~~ 977 (1109)
.+++|..|.++|||+++ |+.||+|++|||+++.++.+ +...+.....+ +.+.++|.|+++.++++++...
T Consensus 27 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~----~~v~l~vr~~~~~~~v~l~~~~---- 98 (166)
T 1w9e_A 27 NGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFG----EKITMTIRDRPFERTITMHKDS---- 98 (166)
T ss_dssp TEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS----SEEEEEEECCTTCEEEEEECCT----
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC----CEEEEEEEcCCCcEEEEEecCC----
Confidence 56889999999999999 99999999999999999988 66555344443 6899999544487777775311
Q ss_pred CcceEEeecCccccCCchhhhhccCCCCCCCcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHH
Q 001276 978 GTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEA 1045 (1109)
Q Consensus 978 ~t~~~~~~~G~~~~~p~~~~r~~~~lp~~~~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~ 1045 (1109)
...+|+.+. . + +|..+.++|||+++||++||+|++|||+++.++..
T Consensus 99 -----~~~lG~~~~-------------~---g-~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~ 144 (166)
T 1w9e_A 99 -----TGHVGFIFK-------------N---G-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKD 144 (166)
T ss_dssp -----TSCCSEEEE-------------T---T-EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCH
T ss_pred -----CCcEeEEEe-------------C---C-EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCCh
Confidence 112344432 1 4 79999999999999999999999999999999843
No 45
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=99.57 E-value=1.6e-15 Score=149.20 Aligned_cols=118 Identities=17% Similarity=0.282 Sum_probs=102.6
Q ss_pred ecccHHHHHHHHHHHHcCCCCCcccccccccCCCceeeeeeEEEEcCh---HhHHHcCCCHHHHHHHHhcCCCccceEEE
Q 001276 828 RGIPIYTISRVLDKIISGASGPSLLINGVKRPMPLVRILEVELYPTLL---SKARSFGLSDDWVQALVKKDPVRRQVLRV 904 (1109)
Q Consensus 828 ~aipi~~i~~~l~~l~~~~~~~~~~~~~v~r~~p~~~~Lgv~~~~i~~---~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V 904 (1109)
||||++.+++++++|+++|+ +.|+ |||+.++.++. ..++.+|++.. ...+++|
T Consensus 6 FAIP~~~~~~v~~~L~~~G~--------v~r~-----~LGv~~~~~~~~~~~~~~~lgl~~~-----------~~~g~~V 61 (134)
T 2l97_A 6 FAIPANDAINIIEQLEKNGK--------VTRP-----ALGIQMVNLSNVSTSDIRRLNIPSN-----------VTSGVIV 61 (134)
T ss_dssp CCCCCCCCCCCCCCCCCCCC--------SSCC-----CCCCEEEESSSSCHHHHHHHSSCSS-----------SCSCEEE
T ss_pred EEeEHHHHHHHHHHHHHcCC--------Eeee-----EeeEEEEECCchhHHHHHHcCCCcC-----------CCCCEEE
Confidence 88999999999999998886 7788 99999999875 56677887642 1367889
Q ss_pred EeecCCCHHhhh-ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeeeec
Q 001276 905 KGCLAGSKAENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVR 974 (1109)
Q Consensus 905 ~~V~~~spA~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l~v~l~~~ 974 (1109)
..|.++|||+ + |++||+|++|||++|.++.++..++...+++ +.+.++|.|+|+.+++++++.+.
T Consensus 62 ~~V~~~spA~-aGL~~GD~I~~inG~~v~~~~~l~~~l~~~~~g----~~v~l~v~R~g~~~~~~v~~~~~ 127 (134)
T 2l97_A 62 RSVQSNMPAN-GHLEKYDVITKVDDKEIASSTDLQSALYNHSIG----DTIKITYYRNGKEETTSIKLNKL 127 (134)
T ss_dssp EECSTTSGGG-TTSCSSCEEEEETTEECCCHHHHHHHHHHSSTT----CEEEEEEEETTEEEEEEEECCCC
T ss_pred EEECCCCchH-HCCCCCCEEEEECCEEcCCHHHHHHHHHhCCCC----CEEEEEEEECCEEEEEEEEEccc
Confidence 9999999999 9 9999999999999999999999998766565 89999999999999999987654
No 46
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.56 E-value=3.2e-14 Score=150.11 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=112.7
Q ss_pred ceEEEEeecCCCHHhhh--ccCCCEEEEECCEEcCCh--hHHHHHHHhccCCCCCCCeEEEEEEeCCEE----------E
Q 001276 900 QVLRVKGCLAGSKAENM--LEQGDMMLAINKQPVTCF--HDIENACQALDKDGEDNGKLDITIFRQGRE----------I 965 (1109)
Q Consensus 900 ~~~~V~~V~~~spA~~a--L~~GDiIlsVnG~~V~~~--~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~----------~ 965 (1109)
.+++|..|.++|||+++ |+.||+|++|||+++.++ .++..++. ..+ +.+.++|.|+++. .
T Consensus 33 ~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~--~~g----~~v~l~v~R~~~~~~~~g~~~~~~ 106 (200)
T 2qt5_A 33 GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLK--NVG----ERVVLEVEYELPPVSIQGSSVMFR 106 (200)
T ss_dssp SCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHH--TCC----SEEEEEEEEECCCCCCCCSSEEEE
T ss_pred CCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH--hCC----CeEEEEEeccCCCcccCCCcccee
Confidence 45679999999999987 999999999999999999 77665552 233 7899999997632 5
Q ss_pred EEEEeeeecCCCCcceEEeecCccccCCchhhhhccCCCCCCCcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--C
Q 001276 966 ELQVGTDVRDGNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--D 1042 (1109)
Q Consensus 966 ~l~v~l~~~~~~~t~~~~~~~G~~~~~p~~~~r~~~~lp~~~~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~ 1042 (1109)
++.+++.... ..+|+.+...... ..+ ...+++|..+.++|||+++| |++||+|++|||+++. +
T Consensus 107 ~~~v~l~~~~--------~~lG~~l~~g~~~-----~~~-~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~ 172 (200)
T 2qt5_A 107 TVEVTLHKEG--------NTFGFVIRGGAHD-----DRN-KSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTT 172 (200)
T ss_dssp EEEEEEECBT--------TBCSEEEEEECCS-----STT-TCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred EEEEEEecCC--------CCeEEEEECCCCC-----Ccc-CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence 5555553211 1134443321000 001 12489999999999999999 9999999999999999 9
Q ss_pred HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1043 LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1043 l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
++++.++++. .++.++|+ +.|++..
T Consensus 173 ~~~~~~~l~~--~~~~v~l~-v~R~~~~ 197 (200)
T 2qt5_A 173 HAEAMSILKQ--CGQEATLL-IEYDVSV 197 (200)
T ss_dssp HHHHHHHHHT--TCSEEEEE-EEEEEEC
T ss_pred HHHHHHHHHc--CCCeEEEE-EEECCcc
Confidence 9999999998 58899998 7887654
No 47
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.55 E-value=4.3e-14 Score=149.04 Aligned_cols=145 Identities=21% Similarity=0.217 Sum_probs=110.9
Q ss_pred CCceEEEEEecCCCcccc--CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEE----------EEEE
Q 001276 296 ETGLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGIS----------MTVN 361 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~~----------~~~~ 361 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.++ .++..++ ...|+.+.|+|.|+++. .+++
T Consensus 32 ~~~~~V-~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~-~~~g~~v~l~v~R~~~~~~~~g~~~~~~~~~ 109 (200)
T 2qt5_A 32 DGKPRV-SNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLL-KNVGERVVLEVEYELPPVSIQGSSVMFRTVE 109 (200)
T ss_dssp SSCSEE-EEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHH-HTCCSEEEEEEEEECCCCCCCCSSEEEEEEE
T ss_pred CCCeEE-EEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHH-HhCCCeEEEEEeccCCCcccCCCccceeEEE
Confidence 456676 79999999997 8999999999999999999 6666554 34588999999997632 5556
Q ss_pred EEeecCCCCCCCccccccceEEecCCHHHhhccCCCCCeEEEEc--CCChhHHcC-CCCCCEEEEcCCeecC--CHHHHH
Q 001276 362 LVVQDLHSITPDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVAE--PGYMLFRAG-VPRHAIIKKFAGEEIS--RLEDLI 436 (1109)
Q Consensus 362 v~l~~~~~~~~~~~~~~~G~~~~~l~~~~~~~~~~~~~gv~v~~--pg~~a~~aG-l~~GD~I~~Vng~~v~--~l~~~~ 436 (1109)
+++... ....|+.+...... +.....|++|.. ++++|+++| |++||+|++|||+++. +++++.
T Consensus 110 v~l~~~--------~~~lG~~l~~g~~~----~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~ 177 (200)
T 2qt5_A 110 VTLHKE--------GNTFGFVIRGGAHD----DRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAM 177 (200)
T ss_dssp EEEECB--------TTBCSEEEEEECCS----STTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred EEEecC--------CCCeEEEEECCCCC----CccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 665421 12346665542211 001125888874 899999999 9999999999999999 999999
Q ss_pred HHHHhcCCCCeEeEEEEeec
Q 001276 437 SVLSKLSRGARVPIEYSSYT 456 (1109)
Q Consensus 437 ~~i~~~~~g~~v~l~~~~~~ 456 (1109)
++++. .++.+.|++.|-.
T Consensus 178 ~~l~~--~~~~v~l~v~R~~ 195 (200)
T 2qt5_A 178 SILKQ--CGQEATLLIEYDV 195 (200)
T ss_dssp HHHHT--TCSEEEEEEEEEE
T ss_pred HHHHc--CCCeEEEEEEECC
Confidence 99998 5788888887754
No 48
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Probab=99.55 E-value=1.6e-14 Score=150.44 Aligned_cols=156 Identities=16% Similarity=0.246 Sum_probs=115.3
Q ss_pred cEEEEEEEeCCCc--EEEeCccccCCCCeEEEEEecCCeEEEEEEEEEc-CCCcEEEEEEcCCCc--ccccc----cCCC
Q 001276 68 SYATGFVVDKRRG--IILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRD-PVHDFGFFRYDPSAI--QFLNY----DEIP 138 (1109)
Q Consensus 68 ~~GSGfvV~~~~G--~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv~~d-~~~DlAlLk~~~~~~--~~~~l----~~l~ 138 (1109)
.-.+||++...+| |||||+||+..+.. +.+.| +.+++++.| |..|+|+||++.... +.+.. ..++
T Consensus 14 ~CTsGf~v~~~~G~~~ilTa~Hc~~~g~~---v~~~d---~~g~v~~~~~p~~DiAlikl~~~~~~~~~v~~~g~~~~~~ 87 (188)
T 2oua_A 14 RCSVGFAATNASGQPGFVTAGHCGSVGTQ---VSIGN---GRGVFERSVFPGNDAAFVRGTSNFTLTNLVSRYNSGGYAT 87 (188)
T ss_dssp EEECCEEEECTTCCEEEEECGGGCCTTCE---EEETT---EEEEEEEEECSBSCEEEEEEEESCEEEEEEECGGGCSEEE
T ss_pred cEecCEEEEeCCCCEEEEECcccCCCCCE---EEecC---ceEEEEeeCCCCCCEEEEEeCCCCccccceeecCCcceEe
Confidence 4568999964368 99999999975433 34555 889999999 999999999986542 21111 1122
Q ss_pred CC-CccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCCcEEEEe
Q 001276 139 LA-PEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALN 217 (1109)
Q Consensus 139 l~-~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~ 217 (1109)
+. +..+++|++|..+|+|.+ .++|+|+.+++.. .|....+ ..+++++..+.+|+|||||+. +|++|||+
T Consensus 88 l~~~~~~~vG~~v~~~G~~tG----~t~G~v~~~~~~v-~~~~~~~----~~~~~~~~~~~~GDSGgpl~~-~~~~vGi~ 157 (188)
T 2oua_A 88 VSGSSTAPIGSQVCRSGSTTG----WYCGTIQARNQTV-SYPQGTV----HSLTRTSVCAEPGDSGGSFIS-GTQAQGVT 157 (188)
T ss_dssp CCBCCCCCTTCEEEEEETTTE----EEEEEEEEEEEEE-EETTEEE----EEEEEESCCCCTTCTTCEEEE-TTEEEEEE
T ss_pred ccCccCCCCCCeEEEEEcCCC----eEEEEEEEEeeEE-EeCCCcE----eeeEeeeeecCCCCccceEEE-CCEEEEEE
Confidence 33 467899999999999987 4789999988754 1221111 246889999999999999994 88999999
Q ss_pred ccccC---CCCCccccchHHHHHHH
Q 001276 218 AGSKS---SSASAFFLPLERVVRAL 239 (1109)
Q Consensus 218 ~~~~~---~~~~~falP~~~i~~~l 239 (1109)
+++.. ..+.+|++|++.+++.+
T Consensus 158 s~~~~~~~~~~~~~~~pi~~~l~~~ 182 (188)
T 2oua_A 158 SGGSGNCRTGGTTFYQEVNPMLNSW 182 (188)
T ss_dssp EEEEEETTTEEEEEEEESHHHHHHT
T ss_pred eccCCCCCCCCceEEEEHHHHHHHc
Confidence 87642 13468999998888764
No 49
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.54 E-value=6.4e-14 Score=143.19 Aligned_cols=145 Identities=18% Similarity=0.233 Sum_probs=108.1
Q ss_pred cCCCccceEEEEcChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhH-H
Q 001276 258 IPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLK-L 335 (1109)
Q Consensus 258 v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~-l 335 (1109)
..|++||+.+... ..|++| ..|.++|||++ ||++||+|++|||+++.+|.+ +
T Consensus 13 ~~~~~lG~~~~~~-------------------------~~g~~V-~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~ 66 (166)
T 1w9e_A 13 DQDGKIGLRLKSI-------------------------DNGIFV-QLVQANSPASLVGLRFGDQVLQINGENCAGWSSDK 66 (166)
T ss_dssp CTTSCCSEEEEEE-------------------------TTEEEE-EEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCCcEeEEEEeC-------------------------CCCEEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 3578999998852 256666 79999999999 999999999999999999988 6
Q ss_pred HHHH-hcCCCCeEEEEEEECCEEEEEEEEeecCCCCCCCccccccceEEecCCHHHhhccCCCCCeEEEE--cCCChhHH
Q 001276 336 ETLL-DDGVDKNIELLIERGGISMTVNLVVQDLHSITPDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVA--EPGYMLFR 412 (1109)
Q Consensus 336 ~~~l-~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~~G~~~~~l~~~~~~~~~~~~~gv~v~--~pg~~a~~ 412 (1109)
...+ ....|+.++|+|.|+++.++++++... ....|+.+. .| +|. .++++|++
T Consensus 67 ~~~~~~~~~~~~v~l~vr~~~~~~~v~l~~~~---------~~~lG~~~~--------------~g-~v~~v~~~s~a~~ 122 (166)
T 1w9e_A 67 AHKVLKQAFGEKITMTIRDRPFERTITMHKDS---------TGHVGFIFK--------------NG-KITSIVKDSSAAR 122 (166)
T ss_dssp HHHHHHHCCSSEEEEEEECCTTCEEEEEECCT---------TSCCSEEEE--------------TT-EEEEECTTSHHHH
T ss_pred HHHHHhcCCCCEEEEEEEcCCCcEEEEEecCC---------CCcEeEEEe--------------CC-EEEEEccCCHHHH
Confidence 5444 556788999999554477776665311 123465544 23 444 58999999
Q ss_pred cCCCCCCEEEEcCCeecCCHHHHHHHHHhcCCCCeEeEEE
Q 001276 413 AGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEY 452 (1109)
Q Consensus 413 aGl~~GD~I~~Vng~~v~~l~~~~~~i~~~~~g~~v~l~~ 452 (1109)
+||++||+|++|||+++.++....-.+.-..+|+.+.+++
T Consensus 123 aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v 162 (166)
T 1w9e_A 123 NGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162 (166)
T ss_dssp TTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEE
T ss_pred cCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEE
Confidence 9999999999999999999854443343344666666554
No 50
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.54 E-value=5.5e-14 Score=148.93 Aligned_cols=138 Identities=17% Similarity=0.145 Sum_probs=104.2
Q ss_pred ceEEEEeecCCCHHhhh--ccCCCEEEEECCEEcCC----hhHHHHHHHhccCCCCCCCe-EEEEEEeCCEEE--EEEEe
Q 001276 900 QVLRVKGCLAGSKAENM--LEQGDMMLAINKQPVTC----FHDIENACQALDKDGEDNGK-LDITIFRQGREI--ELQVG 970 (1109)
Q Consensus 900 ~~~~V~~V~~~spA~~a--L~~GDiIlsVnG~~V~~----~~dl~~~l~~~~~g~~~~~~-v~l~V~R~g~~~--~l~v~ 970 (1109)
.+++|..|.++|||+++ |+.||+|++|||+.|.+ +.++..++ ...+ .. +.++|.|+++.. .+++.
T Consensus 45 ~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~--~~~~----~~~v~l~v~R~~~~~~~~~~v~ 118 (206)
T 3r0h_A 45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLF--HTTY----EKAVTLTVFRADPPELEKFNVD 118 (206)
T ss_dssp SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHH--HSCC----SSEEEEEEECCSSCCEEEEEEE
T ss_pred CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHH--HhcC----CCceEEEEEecccCCCcEEEEE
Confidence 46889999999999987 99999999999999999 44444444 2232 45 999999988654 34444
Q ss_pred eeecCCCCcceEEeecCccccCCchhhhhccCCCCCCCcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCCH--HHHH
Q 001276 971 TDVRDGNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFV 1047 (1109)
Q Consensus 971 l~~~~~~~t~~~~~~~G~~~~~p~~~~r~~~~lp~~~~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~l--~~f~ 1047 (1109)
+..... ..+|+.+.... .+++|..|.++|||+++| |++||.|++|||+++.++ +++.
T Consensus 119 l~~~~~-------~~lG~~~~~~~-------------~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~ 178 (206)
T 3r0h_A 119 LMKKAG-------KELGLSLSPNE-------------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCY 178 (206)
T ss_dssp EECCTT-------CCCCEEEEECS-------------SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHH
T ss_pred EecCCC-------CccCeEEEcCC-------------ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 332110 12455554211 379999999999999999 999999999999999965 8888
Q ss_pred HHHHhCCCCceEEEEEEEe
Q 001276 1048 NVTKEIEHGEFVRVRTVHL 1066 (1109)
Q Consensus 1048 ~~l~~~~~~~~v~l~~v~r 1066 (1109)
+.+++ .++.+.|. +.|
T Consensus 179 ~~l~~--~~~~v~L~-V~R 194 (206)
T 3r0h_A 179 ALFKG--ANGKVSME-VTR 194 (206)
T ss_dssp HHHHT--CCSEEEEE-EEE
T ss_pred HHHHc--CCCeEEEE-EEe
Confidence 89886 36678888 444
No 51
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.53 E-value=7.5e-14 Score=147.88 Aligned_cols=139 Identities=21% Similarity=0.260 Sum_probs=104.2
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC----hhHHHHHHhcCCCCe-EEEEEEECCEEE--EEEEEeecC
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ----FLKLETLLDDGVDKN-IELLIERGGISM--TVNLVVQDL 367 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~----~~~l~~~l~~~~g~~-v~l~v~R~g~~~--~~~v~l~~~ 367 (1109)
.|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++.. .++. +.|+|.|+++.. .+++.+...
T Consensus 45 ~g~~V-~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~-~~~~~v~l~v~R~~~~~~~~~~v~l~~~ 122 (206)
T 3r0h_A 45 TGCVI-THVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHT-TYEKAVTLTVFRADPPELEKFNVDLMKK 122 (206)
T ss_dssp SCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHS-CCSSEEEEEEECCSSCCEEEEEEEEECC
T ss_pred CCeEE-EEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHh-cCCCceEEEEEecccCCCcEEEEEEecC
Confidence 57776 79999999999 8 99999999999999999 4444444444 4455 999999987654 444444322
Q ss_pred CCCCCCccccccceEEecCCHHHhhccCCCCCeEEEEc--CCChhHHcC-CCCCCEEEEcCCeecCCH--HHHHHHHHhc
Q 001276 368 HSITPDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVAE--PGYMLFRAG-VPRHAIIKKFAGEEISRL--EDLISVLSKL 442 (1109)
Q Consensus 368 ~~~~~~~~~~~~G~~~~~l~~~~~~~~~~~~~gv~v~~--pg~~a~~aG-l~~GD~I~~Vng~~v~~l--~~~~~~i~~~ 442 (1109)
. ....|+.+... ..|+||.+ ++|+|+++| |++||+|++|||+++.++ +++.++++.
T Consensus 123 ~-------~~~lG~~~~~~-----------~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~- 183 (206)
T 3r0h_A 123 A-------GKELGLSLSPN-----------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG- 183 (206)
T ss_dssp T-------TCCCCEEEEEC-----------SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-
T ss_pred C-------CCccCeEEEcC-----------CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-
Confidence 1 12346665521 14788884 999999999 999999999999999966 788888876
Q ss_pred CCCCeEeEEEEeecc
Q 001276 443 SRGARVPIEYSSYTD 457 (1109)
Q Consensus 443 ~~g~~v~l~~~~~~~ 457 (1109)
.++.+.|++.|...
T Consensus 184 -~~~~v~L~V~R~~~ 197 (206)
T 3r0h_A 184 -ANGKVSMEVTRPKP 197 (206)
T ss_dssp -CCSEEEEEEEEECC
T ss_pred -CCCeEEEEEEeCCC
Confidence 34577777777544
No 52
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Probab=99.52 E-value=7.8e-14 Score=147.29 Aligned_cols=156 Identities=25% Similarity=0.249 Sum_probs=109.0
Q ss_pred cEEEEEEEeCCCcEEEeCccccCCCC--eEEEEEe----cCCeEEE-EEEEEEcCCCcEEEEEEcCCC-------cccc-
Q 001276 68 SYATGFVVDKRRGIILTNRHVVKPGP--VVAEAMF----VNREEIP-VYPIYRDPVHDFGFFRYDPSA-------IQFL- 132 (1109)
Q Consensus 68 ~~GSGfvV~~~~G~IlTn~HVv~~~~--~~~~v~~----~~~~~~~-a~vv~~d~~~DlAlLk~~~~~-------~~~~- 132 (1109)
+.||||+|++ .+||||+||+.... ..+.+.. .++..+. ++++.+++.+||||||++... +.+-
T Consensus 22 ~~c~G~lI~~--~~VLTaaHcv~~~~~~~~v~v~~~~~~~~~~~~~~~~i~~~~~~~DiAll~l~~~~~~~~~~~~~~~~ 99 (204)
T 2vid_A 22 KSATGFVVGK--NTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQVEERAIERGPKGFNFND 99 (204)
T ss_dssp SSCEEEEEET--TEEEECHHHHTTCCTTCEEEESCCSSSCCSCEEEEEEEEECSSSSCCEEEEECSEEEEEETTEEEHHH
T ss_pred eeEEEEEEEC--CEEEEChhHCCCccCCceEEEEeccccCCCcEEEeeEEecCCCCCeEEEEEEcCcccccccccccccc
Confidence 4689999996 49999999997533 1344422 3556676 567778889999999998531 1110
Q ss_pred cccCCCCCCccCCCCCEEEEEecCCCCCC----eEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCCCceec
Q 001276 133 NYDEIPLAPEAACVGLEIRVVGNDSGEKV----SILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVID 208 (1109)
Q Consensus 133 ~l~~l~l~~~~~~~G~~V~~iG~p~g~~~----si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n 208 (1109)
.+.++.|.. .+..|+.++++|+|.+... ....|.++..... +++.++.+.+|+|||||+|
T Consensus 100 ~v~pi~l~~-~~~~g~~~~~~G~g~~~~~~~~~~~~~g~v~~~~~~---------------~~~~~~~~~~GdSGGPl~~ 163 (204)
T 2vid_A 100 NVTPFKYAA-GAKAGERIKVIGYPHPYKNKYVLYESTGPVMSVEGS---------------SIVYSAHTESGNSGSPVLN 163 (204)
T ss_dssp HCCCCCBCS-CCCTTCEEEEEECCCCCC--CCCEEEEEEEEEEETT---------------EEEECCCCCGGGTTCEEEC
T ss_pred cccccccCC-cCCCCCEEEEEeCCCCCCCCcceEeeccEEeeccCC---------------eEEEecccCCCCccCcEEC
Confidence 124555544 5789999999999986543 4556777765321 4778889999999999999
Q ss_pred CCCcEEEEeccccC---CCCCcccc-chHHHHHHHHH
Q 001276 209 WQGRAVALNAGSKS---SSASAFFL-PLERVVRALRF 241 (1109)
Q Consensus 209 ~~G~vVGi~~~~~~---~~~~~fal-P~~~i~~~l~~ 241 (1109)
.+|++|||++.+.. ....+|.+ +...+++++++
T Consensus 164 ~~g~lvGI~s~g~~~~~~~~~~~~~~~~~~~~~wI~~ 200 (204)
T 2vid_A 164 SNNELVGIHFASDVKNDDNRNAYGVYFTPEIKKFIAE 200 (204)
T ss_dssp TTSCEEEEEEEECC---CCCCEEEECCCHHHHHHHHH
T ss_pred CCCeEEEEEecCccCCCcccccceeEeCHHHHHHHHh
Confidence 99999999988763 23455543 33556666654
No 53
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A
Probab=99.49 E-value=2.6e-13 Score=150.26 Aligned_cols=169 Identities=24% Similarity=0.287 Sum_probs=114.6
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCe---EEEEEe--------cCCeEEEEEEEEEcC
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPV---VAEAMF--------VNREEIPVYPIYRDP 115 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~---~~~v~~--------~~~~~~~a~vv~~d~ 115 (1109)
+++|+|.... ......|+||+|++ ++|||++||+..... .+.+.+ .++....++++..+.
T Consensus 20 ~~~v~i~~~~-------~~~~~~C~G~lI~~--~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g~~~~~~i~~~~~ 90 (274)
T 2o8l_A 20 APVTYIQVEA-------PTGTFIASGVVVGK--DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSG 90 (274)
T ss_dssp TTEEEEEEEE-------TTEEEEEEEEEEET--TEEEECHHHHHTTTTCGGGEEEEETCCBTTBCTTCCEEEEEEEECSS
T ss_pred ceEEEEEEEc-------CCCCEEEEEEEEEC--CEEEEChhhCcccCCCcceEEEEecccCcccccCccEEEEEEEeCCC
Confidence 5667776532 12347899999995 599999999974322 256643 345555667778888
Q ss_pred CCcEEEEEEcCCC----cccccccCCCCC-CccCCCCCEEEEEecCCCCCC---eEEEEEEEEecCCCCCCCCCCccccc
Q 001276 116 VHDFGFFRYDPSA----IQFLNYDEIPLA-PEAACVGLEIRVVGNDSGEKV---SILAGTLARLDRDAPHYKKDGYNDFN 187 (1109)
Q Consensus 116 ~~DlAlLk~~~~~----~~~~~l~~l~l~-~~~~~~G~~V~~iG~p~g~~~---si~~G~vs~~~~~~~~~~~~~~~~~~ 187 (1109)
.+||||||++... +. ..+.++.|. ...+..|+.++++|+|.+... ....|.++....
T Consensus 91 ~~DIALLkL~~~~~~~~~~-~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~~~~~~~~~g~i~~~~~-------------- 155 (274)
T 2o8l_A 91 EGDLAIVKFSPNEQNKHIG-EVVKPATMSNNAETQTNQNITVTGYPGDKPVATMWESKGKITYLKG-------------- 155 (274)
T ss_dssp SSCCEEEEECCCTTSCCTT-TSSCCCEECCCTTCCTTCEEEEEECCTTSSTTCEEEEEEEEEEEET--------------
T ss_pred CCcEEEEEecCcccccccc-cccccccccccccccCCCEEEEEECCCCCCCceEEecCceEEecCC--------------
Confidence 8999999998542 11 123444444 345789999999999977542 235566665422
Q ss_pred eeeEEEeeccCCCCCCCceecCCCcEEEEeccccCC-CCCccccchHHHHHHHHH
Q 001276 188 TFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS-SASAFFLPLERVVRALRF 241 (1109)
Q Consensus 188 ~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~-~~~~falP~~~i~~~l~~ 241 (1109)
.+++.++.+..|+||||||+.+|+||||++.+... .+.+|++. ..++.+++.
T Consensus 156 -~~i~~~~~~c~GdSGGPLv~~~g~lvGIvS~G~~~~~~~~~~~~-~~~~~wI~~ 208 (274)
T 2o8l_A 156 -EAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFIN-ENVRNFLKQ 208 (274)
T ss_dssp -TEEEESCCCCTTCTTCEEECTTSCEEEEEEEEETTTEEEEEECC-HHHHHHHHH
T ss_pred -CeEEeCcccCCCCchhheeccCCeEEEEEeCcccCCCCceEEec-HHHHHHHHH
Confidence 14788889999999999999999999999876532 23345553 444555443
No 54
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Probab=99.49 E-value=4.6e-14 Score=153.81 Aligned_cols=146 Identities=17% Similarity=0.219 Sum_probs=100.9
Q ss_pred ccEEEEEEEeCCCcEEEeCccccCCCC---eEEEEEecC------------CeEEEEEEEEEcC---CCcEEEEEEcCCC
Q 001276 67 ASYATGFVVDKRRGIILTNRHVVKPGP---VVAEAMFVN------------REEIPVYPIYRDP---VHDFGFFRYDPSA 128 (1109)
Q Consensus 67 ~~~GSGfvV~~~~G~IlTn~HVv~~~~---~~~~v~~~~------------~~~~~a~vv~~d~---~~DlAlLk~~~~~ 128 (1109)
...||||+|++ ++||||+||+.+.. ..+.+.... ...+.++.+..|| .+||||||++...
T Consensus 47 ~~~c~G~lI~~--~~VLTAaHcv~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~i~~hp~~~~~DiALLkl~~~~ 124 (246)
T 1qtf_A 47 STLATGVLIGK--NTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIKLKPNE 124 (246)
T ss_dssp TEEEEEEEEET--TEEEECHHHHGGGTTCGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCTTCTTSCCEEEEECCCT
T ss_pred CceEEEEEEEC--CEEEECHHhCCCCCCCceEEEEecCccccccccccccCCceEEEEEEEeCCCCCCCCEEEEEEeCCc
Confidence 46899999995 59999999997432 234444321 1478899999999 9999999998653
Q ss_pred c--cc-ccccCCCCC-CccCCCCCEEEEEecCCCCCCe-EEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCC
Q 001276 129 I--QF-LNYDEIPLA-PEAACVGLEIRVVGNDSGEKVS-ILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSG 203 (1109)
Q Consensus 129 ~--~~-~~l~~l~l~-~~~~~~G~~V~~iG~p~g~~~s-i~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SG 203 (1109)
. .+ -.+.+++|. ...+..|+.++++|+|.+...+ .....+.... .++.++.+.+|+||
T Consensus 125 ~~~~~~~~v~~i~L~~~~~~~~g~~v~v~G~p~g~~~~~~~~~~~~~~~-----------------~~~~~~~~~~GdSG 187 (246)
T 1qtf_A 125 KGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSAYSLYQSQIEMFN-----------------DSQYFGYTEVGNSG 187 (246)
T ss_dssp TSCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTTSTTCCEEEEEEESS-----------------SSBEESCCCGGGTT
T ss_pred cccccccceeeeecCCccccCCCCEEEEEECCCCCCCceeEeeeeeecC-----------------cEEEeCCCCCCCch
Confidence 1 00 023445554 3457899999999999886543 1111111110 02445678999999
Q ss_pred CceecCCCcEEEEeccccCCCCCccccchHHH
Q 001276 204 SPVIDWQGRAVALNAGSKSSSASAFFLPLERV 235 (1109)
Q Consensus 204 gPv~n~~G~vVGi~~~~~~~~~~~falP~~~i 235 (1109)
|||||.+|+||||++.+. .+|++|++.+
T Consensus 188 GPlv~~~g~lvGI~s~g~----~~~~ipi~~~ 215 (246)
T 1qtf_A 188 SGIFNLKGELIGIHSGKG----GQHNLPIGVF 215 (246)
T ss_dssp CEEECTTCCEEEEEEEEE----TTTTEEEEEE
T ss_pred hheECCCCEEEEEEeccc----cCccccchhh
Confidence 999999999999998864 2577886544
No 55
>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1
Probab=99.47 E-value=1.5e-13 Score=143.13 Aligned_cols=157 Identities=18% Similarity=0.275 Sum_probs=112.7
Q ss_pred EEEEEEeCC-CcEEEeCccccCCCCeEEEEEecCCeEEEEEEEEEc-CCCcEEEEEEcCCC-c-cccccc---CCCCC-C
Q 001276 70 ATGFVVDKR-RGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRD-PVHDFGFFRYDPSA-I-QFLNYD---EIPLA-P 141 (1109)
Q Consensus 70 GSGfvV~~~-~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv~~d-~~~DlAlLk~~~~~-~-~~~~l~---~l~l~-~ 141 (1109)
.+||++..+ ++|||||+||+... .. +...++....+++...+ |..|+||||++... . +.+.+. .+++. .
T Consensus 15 T~Gfiv~~~g~~~ilT~~Hv~~~~-~~--v~~~~~~~~~g~~~~~~~~~~DiAlikl~~~~~~~~~v~~~~g~~~~i~~~ 91 (187)
T 1hpg_A 15 SAAFNVTKGGARYFVTAGHCTNIS-AN--WSASSGGSVVGVREGTSFPTNDYGIVRYTDGSSPAGTVDLYNGSTQDISSA 91 (187)
T ss_dssp ECCEEEEETTEEEEEECHHHHTTC-SE--EESSTTCCEEEEEEEEECSBSCEEEEEECSSCCCCSEEECSSSCEEECCEE
T ss_pred cceEEEEECCeeEEEECcccCCCC-Ce--EEeCCCceeEEEEeCccCCCCCEEEEEeCCCCCcCceEEecCCceeeeccc
Confidence 459999762 25999999999854 33 33455554556766666 88999999998632 1 222220 12222 5
Q ss_pred ccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCCcEEEEecccc
Q 001276 142 EAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 142 ~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
..+++|+.|..+|+|.+ .+.|+|+.+++... |.... ...+|++++.+.+|+|||||++. +++|||++++.
T Consensus 92 ~~~~~G~~v~~~G~~~g----~t~G~v~~~~~~v~-~~~~~----~~~~i~t~~~~~~GdSGgpl~~~-~~~vGi~s~~~ 161 (187)
T 1hpg_A 92 ANAVVGQAIKKSGSTTK----VTSGTVTAVNVTVN-YGDGP----VYNMVRTTACSAGGDSGGAHFAG-SVALGIHSGSS 161 (187)
T ss_dssp CCCCTTCEEEEEETTTE----EEEEEEEEEEEEEE-ETTEE----EEEEEEECCCCCTTCTTCEEEET-TEEEEEEEEES
T ss_pred cCCCCCCEEEEEEcCCC----EeEEEEEEeEEEEE-eCCCe----EeeeEEeccccCCCCCCCeEEEC-CEEEEEEEeeC
Confidence 67899999999999976 58899999987642 22111 23469999999999999999987 49999998765
Q ss_pred CC---CCCccccchHHHHHHH
Q 001276 222 SS---SASAFFLPLERVVRAL 239 (1109)
Q Consensus 222 ~~---~~~~falP~~~i~~~l 239 (1109)
.. .+.+|++|++.+++.|
T Consensus 162 ~~~~~~~~~~~~~i~~~~~~l 182 (187)
T 1hpg_A 162 GCSGTAGSAIHQPVTEALSAY 182 (187)
T ss_dssp CCBTTBCCCEEEEHHHHHHHH
T ss_pred CCCCCCCceEEEEHHHHHHHc
Confidence 31 3689999999887765
No 56
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1
Probab=99.47 E-value=5.2e-13 Score=147.26 Aligned_cols=170 Identities=24% Similarity=0.289 Sum_probs=115.1
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCC---eEEEEEe--------cCCeEEEEEEEEEcC
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGP---VVAEAMF--------VNREEIPVYPIYRDP 115 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~---~~~~v~~--------~~~~~~~a~vv~~d~ 115 (1109)
+++|+|.... ......|+||+|++ .+||||+||+.... ..+.+.+ .+++...++++..+.
T Consensus 20 ~~~v~l~~~~-------~~g~~~CgG~lI~~--~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g~~~~~~i~~~~~ 90 (268)
T 1wcz_A 20 APVTYIQVEA-------PTGTFIASGVVVGK--DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSG 90 (268)
T ss_dssp TTEEEEEEEC--------CCEEEEEEEECSS--SEEEECHHHHGGGTTCGGGEEEEETCCBTTBCTTCCEEEEEEEECSS
T ss_pred cEEEEEEEEc-------CCCCEEEEEEEEEC--CEEEEChhhCCCccCCcceEEEEecccCcccccCCcEEEEEEecCCC
Confidence 4567776531 12347899999985 59999999997432 2366643 345555667777888
Q ss_pred CCcEEEEEEcCCCc--cc-ccccCCCCCC-ccCCCCCEEEEEecCCCCCC---eEEEEEEEEecCCCCCCCCCCccccce
Q 001276 116 VHDFGFFRYDPSAI--QF-LNYDEIPLAP-EAACVGLEIRVVGNDSGEKV---SILAGTLARLDRDAPHYKKDGYNDFNT 188 (1109)
Q Consensus 116 ~~DlAlLk~~~~~~--~~-~~l~~l~l~~-~~~~~G~~V~~iG~p~g~~~---si~~G~vs~~~~~~~~~~~~~~~~~~~ 188 (1109)
.+||||||++.... .+ ..+.++.|.. ..+..|+.++++|+|.+... ....|.++....
T Consensus 91 ~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~~~~~~~~~g~i~~~~~--------------- 155 (268)
T 1wcz_A 91 EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLKG--------------- 155 (268)
T ss_dssp SSCCEEEEECCCTTSCCHHHHSCCCCBCCCSSCCTTCEEEEEECCTTSSTTCEEEEEEEEEEEET---------------
T ss_pred CCcEEEEEecCcccccccccccceeecccccccCCCCEEEEEECCCCCCCceEEeecceEEeeCC---------------
Confidence 89999999986521 00 1234445543 35788999999999976432 345566665422
Q ss_pred eeEEEeeccCCCCCCCceecCCCcEEEEeccccCC-CCCccccchHHHHHHHHH
Q 001276 189 FYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS-SASAFFLPLERVVRALRF 241 (1109)
Q Consensus 189 ~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~-~~~~falP~~~i~~~l~~ 241 (1109)
.+++.++.+..|+|||||++.+|+||||++.+... .+.+|++. ..++.+++.
T Consensus 156 ~~i~~~~~~c~GdSGGPLv~~~g~lvGIvS~G~~~~~~~~~~~~-~~~~~wI~~ 208 (268)
T 1wcz_A 156 EAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFIN-ENVRNFLKQ 208 (268)
T ss_dssp TEEEESBCCCTTCTTCEEECTTSCEEEEEEEEETTTEEEEEECC-HHHHHHHHH
T ss_pred CeEEEecccCCCCccCeEEccCCEEEEEEeCCccCCcceeEEcC-HHHHHHHHH
Confidence 14788899999999999999899999999876532 23455554 455555544
No 57
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}
Probab=99.45 E-value=1.7e-13 Score=142.61 Aligned_cols=150 Identities=21% Similarity=0.348 Sum_probs=109.8
Q ss_pred EEEEEEEeCCCcEEEeCccccCCCCeEEEEEecCCeEEEEEEEEEc-CCCcEEEEEEcCCCc--ccccc---cCCCCC-C
Q 001276 69 YATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRD-PVHDFGFFRYDPSAI--QFLNY---DEIPLA-P 141 (1109)
Q Consensus 69 ~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv~~d-~~~DlAlLk~~~~~~--~~~~l---~~l~l~-~ 141 (1109)
--+||+++. +||||+||+..+. . ++..| +++++.| +..|+||||++.... +.+.+ ..+++. .
T Consensus 17 CT~Gf~~~~---~ilTa~Hc~~~~~-~--v~~~d-----g~v~~~~~~~~DiAlikl~~~~~~~~~v~~~~g~~v~l~~s 85 (189)
T 2ea3_A 17 CSIGFAVNG---GFITAGHCGRTGA-T--TANPT-----GTFAGSSFPGNDYAFVRTGAGVNLLAQVNNYSGGRVQVAGH 85 (189)
T ss_dssp EECCEEETT---EEEECGGGCCTTC-E--EETTT-----EEEEEEECSBSCEEEEEECTTCEEEEEEECSSSCEEECCBC
T ss_pred CccCEEccC---eEEEchhcCCCCC-E--EEeCC-----cEEEeeCCCCCCEEEEEECCCCccccceEecCCceeecCCC
Confidence 347999963 9999999998543 3 34444 7889999 999999999987542 22110 022343 4
Q ss_pred ccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCCcEEEEecccc
Q 001276 142 EAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 142 ~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
..+++|+.|..+|++.+ .++|+|+.+++... |....+ ..+++++..+.+|+|||||++ +|+++||++++.
T Consensus 86 ~~~~vG~~v~~~G~~tG----~t~G~Vs~~~~~v~-~~~~~~----~~~~~~~~~~~~GDSGgpl~~-~~~~vGi~s~~~ 155 (189)
T 2ea3_A 86 TAAPVGSAVCRSGSTTG----WHCGTITALNSSVT-YPEGTV----RGLIRTTVCAEPGDSGGSLLA-GNQAQGVTSGGS 155 (189)
T ss_dssp CCCCTTCEEEEEETTTE----EEEEEEEEEEEEEE-ETTEEE----EEEEEESCCCCTTCTTCEEEE-TTEEEEEEEEEE
T ss_pred cCCCCCCEEEEEEeCCc----cEEEEEEecceEEE-eCCccC----cceEEeeeeccCCCccCeEEE-CCEEEEEEeecC
Confidence 67899999999999977 47899998877542 211111 236899999999999999996 899999998764
Q ss_pred C---CCCCccccchHHHHHHH
Q 001276 222 S---SSASAFFLPLERVVRAL 239 (1109)
Q Consensus 222 ~---~~~~~falP~~~i~~~l 239 (1109)
. ..+.+|++|++.+++.+
T Consensus 156 ~~c~~~~~~~~~pi~~~l~~~ 176 (189)
T 2ea3_A 156 GNCRTGGTTFFQPVNPILQAY 176 (189)
T ss_dssp EETTTEEEEEEEEHHHHHHHH
T ss_pred CCCCCCCcEEEEEHHHHHHHC
Confidence 3 23578999998877765
No 58
>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3
Probab=99.44 E-value=8.4e-14 Score=138.56 Aligned_cols=128 Identities=17% Similarity=0.181 Sum_probs=92.8
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecCCeEEEEEEEEEcCCCcEEEEEEc
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYD 125 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv~~d~~~DlAlLk~~ 125 (1109)
...+|+|... ..+.||||+|+. +|++||++||+. +.....++. ++++++ +.+++..|||++++.
T Consensus 3 ~~n~~~v~g~----------~~G~GsgF~i~~-~g~vVTA~HVv~-~~~~~~V~~-~G~~~~---Vgf~~~~DlA~l~v~ 66 (198)
T 1mbm_A 3 RGNVGFVAGS----------SYGTGSVWTRNN-EVVVLTASHVVG-RANMATLKI-GDAMLT---LTFKKNGDFAEAVTT 66 (198)
T ss_dssp CTTEEEEESS----------SEEEEEEEEETT-EEEEEEEHHHHC-TTCEEEEEE-TTEEEE---EECEEETTEEEEEEC
T ss_pred ccceEEEecc----------cCCccceEEECC-CeEEEEeeeEEc-cCceEEEEE-CCEEEE---eecccCCcEEEEEee
Confidence 4456776543 367899999997 799999999997 456677888 999988 788899999999993
Q ss_pred CCCcccccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCCCc
Q 001276 126 PSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSP 205 (1109)
Q Consensus 126 ~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgP 205 (1109)
....+ -.+..++|++ +++|+.-+ ....|.++++.-. ...++++ .||+||||
T Consensus 67 ~~~~~-g~~P~l~las--p~vG~a~~----------~~~tG~~~~l~g~-------------~g~l~~t---~PGDSGsP 117 (198)
T 1mbm_A 67 QSELP-GNWPQLHFAQ--PTTGPASW----------CTATGDEEGLLSG-------------EVCLAWT---TSGDSGSA 117 (198)
T ss_dssp TTTSC-SCCCBCCBCC--CCSEEEEE----------EETTEEEEEEECS-------------SCEECCC---CGGGTTCE
T ss_pred ccCCC-CCCcccccCC--CcccceEE----------eeccccEEEEecC-------------CceeEcC---CCCCCCCc
Confidence 21111 1222344434 68888322 2456777777511 1246666 89999999
Q ss_pred eecCCCcEEEEecc
Q 001276 206 VIDWQGRAVALNAG 219 (1109)
Q Consensus 206 v~n~~G~vVGi~~~ 219 (1109)
|+|.+ +||||+++
T Consensus 118 Vl~~~-~vIGV~T~ 130 (198)
T 1mbm_A 118 VVQGD-AVVGVHTG 130 (198)
T ss_dssp EEETT-EEEEEEEE
T ss_pred cccCC-eEEEEEec
Confidence 99999 99999988
No 59
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}
Probab=99.41 E-value=7e-13 Score=140.88 Aligned_cols=169 Identities=10% Similarity=0.036 Sum_probs=112.3
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCC--CcEEEEe----ecCCeEEeE-EEEEeeCCCcEEEEEECCCCCC-----cc
Q 001276 650 FFGTGVIIYHSQSMGLVVVDKNTVAISA--SDVMLSF----AAFPIEIPG-EVVFLHPVHNFALIAYDPSSLG-----VA 717 (1109)
Q Consensus 650 ~~GsG~VId~~~~~G~IlTn~~~V~~~~--~di~V~~----~d~~~~~~a-~vv~~dp~~dlAilk~d~~~l~-----~~ 717 (1109)
..|+||+|+ +++|||++|++.... ..+.|++ .+ +..+++ +++..|+..||||||++...++ ..
T Consensus 23 ~~c~G~lI~----~~~VLTaaHcv~~~~~~~~i~v~~~~~~~~-g~~~~~~~v~~~~~~~DiAll~l~~~~~~~~~~~~~ 97 (210)
T 2as9_A 23 KDATGFVIG----KNTIITNKHVSKDYKVGDRITAHPNGDKGN-GGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFN 97 (210)
T ss_dssp SSCEEEEEE----TTEEEECHHHHHHCCTTCEEEESCCGGGCC-SCEEEEEEEEECSSSSSCEEEEECSEEEEEETTEEE
T ss_pred eeEEEEEEe----CCEEEECHhHCCccCCCCEEEEEeCcccCC-CCEEEEEEEEeCCCCCcEEEEEecCccccccccccc
Confidence 569999999 579999977664322 2577754 34 777888 4888999999999999764221 00
Q ss_pred cccceeceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCcccccceeEEEEecccC-CCCCceE
Q 001276 718 GASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFG-STFSGVL 796 (1109)
Q Consensus 718 ~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~~~~~~I~~d~~ig-~~sGGpL 796 (1109)
....+.++.|.. .+..|+.++++|+|.+....... .++ .+.++.. + ..+|++|+.+. .+|||||
T Consensus 98 ~~~~v~~i~l~~--~~~~g~~v~v~G~p~~~~~~~~l-~~~----~g~v~~~----~----~~~i~~~~~~~~GdSGGPl 162 (210)
T 2as9_A 98 FNENVQAFNFAK--DAKVDDKIKVIGYPLPAQNSFKQ-FES----TGTIKRI----K----DNILNFDAYIEPGNSGSPV 162 (210)
T ss_dssp GGGSCCCCCBCS--CCCTTCEEEEEECSSTTTTTSCC-EEE----EEEEEEE----E----TTEEEEECCCCTTCTTCEE
T ss_pred cccccceeecCC--CCCCCCEEEEEeCCCCCCCCcce-EEe----eeEEccc----c----CCeEEEcCccCCCCccCcE
Confidence 012345567753 47899999999999865432100 111 2222211 1 13567887763 3699999
Q ss_pred EcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHHHHHHcC
Q 001276 797 TDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISG 845 (1109)
Q Consensus 797 ~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l~~~ 845 (1109)
+|.+|+|+||.+..... .+.+..+ +++|++.++++++..+..
T Consensus 163 v~~~g~lvGI~s~g~~~-----~~~~~~~--~~~~~~~i~~f~~~~~~~ 204 (210)
T 2as9_A 163 LNSNNEVIGVVYGGIGK-----IGSEYNG--AVYFTPQIKDFIQKHIEQ 204 (210)
T ss_dssp ECTTSCEEEEECCSCCC-----TTCSSEE--EEECCHHHHHHHHTTCCC
T ss_pred ECCCCeEEEEEeccccc-----CCccccc--cEEEcHHHHHHHHHhhhh
Confidence 99999999998764332 1223344 669999999999877654
No 60
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}
Probab=99.41 E-value=2.4e-13 Score=141.02 Aligned_cols=151 Identities=20% Similarity=0.337 Sum_probs=110.1
Q ss_pred EEEEEeC-CCcEEEeCccccCCCCeEEEEEecCCeEEEEEEEEEc-CCCcEEEEEEcCCC--cccccc---cCCCCC-Cc
Q 001276 71 TGFVVDK-RRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRD-PVHDFGFFRYDPSA--IQFLNY---DEIPLA-PE 142 (1109)
Q Consensus 71 SGfvV~~-~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv~~d-~~~DlAlLk~~~~~--~~~~~l---~~l~l~-~~ 142 (1109)
+||++.. ..+|||||+||+..+ ..+.+ +.+++++.| |..|+|+||+++.. .+.+.+ ..+++. ..
T Consensus 18 ~Gf~v~~~~~~~ilTa~Hc~~~g-~~v~~-------~~g~v~~~~~~~~D~Alikl~~~~~~~~~v~~~~g~~~~i~~~~ 89 (186)
T 2pfe_A 18 IGFSVRQGSQTGFATAGHCGSTG-TRVSS-------PSGTVAGSYFPGRDMGWVRITSADTVTPLVNRYNGGTVTVTGSQ 89 (186)
T ss_dssp CCEEEEETTEEEEEECGGGCCTT-CEEBT-------TTEEEEEEECSBSCEEEEEECTTSEEEEEEECSSSCEEECCBCC
T ss_pred eeEEEEcCCeeEEEEChhhCCCC-CEEEE-------eeEEEEecCCCCCCEEEEEeCCCcccccceeccCCceEecCCCC
Confidence 6999963 247999999999854 33332 668888998 99999999998753 222221 022232 56
Q ss_pred cCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCCcEEEEeccccC
Q 001276 143 AACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS 222 (1109)
Q Consensus 143 ~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~ 222 (1109)
.+++|++|..+|++.+ .++|+|+.+++... |....+ ..+++++..+.+|+|||||+. +|+++||++++..
T Consensus 90 ~~~vG~~vc~~G~~tG----~t~G~vs~~~~tv~-~~~~~~----~~~~~~~~c~~~GDSGgpl~~-~~~~vGi~s~g~~ 159 (186)
T 2pfe_A 90 EAATGSSVCRSGATTG----WRCGTIQSKNQTVR-YAEGTV----TGLTRTTACAEGGDSGGPWLT-GSQAQGVTSGGTG 159 (186)
T ss_dssp CCCTTCEEEEEETTTE----EEEEEEEEEEEEEE-ETTEEE----EEEEEESCCCCTTCTTCEEEE-TTEEEEEEEEEEE
T ss_pred CCCCCCeEEEEEeCCc----eEEEEEEEEeeeEE-eCCceE----eceEeccEEecCCCccCeEEE-CCEEEEEEeecCC
Confidence 7899999999999987 57899998887631 111112 235888888899999999995 8899999987642
Q ss_pred ---CCCCccccchHHHHHHH
Q 001276 223 ---SSASAFFLPLERVVRAL 239 (1109)
Q Consensus 223 ---~~~~~falP~~~i~~~l 239 (1109)
..+.+|++|++.+++.+
T Consensus 160 ~c~~~~~~~~~pi~~~l~~~ 179 (186)
T 2pfe_A 160 DCRSGGITFFQPINPLLSYF 179 (186)
T ss_dssp ETTTEEEEEEEEHHHHHHHH
T ss_pred CCCCCCcEEEEEHHHHHHHC
Confidence 23468999988887764
No 61
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...
Probab=99.37 E-value=1.4e-12 Score=135.61 Aligned_cols=161 Identities=20% Similarity=0.306 Sum_probs=109.1
Q ss_pred cEEE-EEEEeC-CCcEEEeCccccCCCCeEEEEEecCCeEEEEEEEEEc-CCCcEEEEEEcCCCcccc-cccCCCCC-Cc
Q 001276 68 SYAT-GFVVDK-RRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRD-PVHDFGFFRYDPSAIQFL-NYDEIPLA-PE 142 (1109)
Q Consensus 68 ~~GS-GfvV~~-~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv~~d-~~~DlAlLk~~~~~~~~~-~l~~l~l~-~~ 142 (1109)
+.|| ||++.. .+++||||+||+.. ...+.+...+... .+++...+ +.+|+||||++...+.+- .+.++++. ..
T Consensus 12 ~~ct~Gf~v~~~~~~~ilTaaHcv~~-~~~~~v~~~~~~~-~g~~~~~~~~~~DiAll~l~~~~~~~~~~v~~~~l~~~~ 89 (185)
T 2qa9_E 12 GRCSLGFNVRSGSTYYFLTAGHCTDG-ATTWWANSARTTV-LGTTSGSSFPNNDYGIVRYTNTTIPKDGTVGGQDITSAA 89 (185)
T ss_dssp CEEECCEEEEETTEEEEEECHHHHTT-CSEEESSTTSCSE-EEEEEEEECSBSCEEEEEECCSSSCCCCEETTEECCEEC
T ss_pred CcEeccEEEEECCceEEEECcccCCC-CCcEEecCCCceE-eEEEeccccCCCCEEEEEecCCCccccCccceeeeCCcc
Confidence 4566 999963 24699999999984 4455554444444 35566777 899999999986333221 12333443 35
Q ss_pred cCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCCcEEEEeccccC
Q 001276 143 AACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS 222 (1109)
Q Consensus 143 ~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~~ 222 (1109)
.+.+|+.+.++|++.+ ...|.++..+... .+.... .| ..+++.+..+.+|+|||||++.+ ++|||++++..
T Consensus 90 ~~~~g~~v~~~Gw~~~----~~~g~l~~~~~~v-~~~~~~--~~-~~~~~~~~cac~GDSGGPlv~~~-~~vGI~s~g~~ 160 (185)
T 2qa9_E 90 NATVGMAVTRRGSTTG----THSGSVTALNATV-NYGGGD--VV-YGMIRTNVCAEPGDSGGPLYSGT-RAIGLTSGGSG 160 (185)
T ss_dssp CCCTTCEEEEEETTTE----EEEEEEEEEEEEE-ECSTTC--EE-EEEEEESCCCCTTCTTCEEEETT-EEEEEEEEEEE
T ss_pred cCCCCCEEEEecCCCc----eeEeEEEEEEEEE-EcCCCC--EE-eceEEecccCCCCCccceEEECC-EEEEEEEecCC
Confidence 6789999999999754 4577777765443 111111 01 23577888889999999999875 99999987643
Q ss_pred C---CCCccccchHHHHHHH
Q 001276 223 S---SASAFFLPLERVVRAL 239 (1109)
Q Consensus 223 ~---~~~~falP~~~i~~~l 239 (1109)
. ...+|+.|++.++..+
T Consensus 161 ~~~~~~p~vyt~v~~~~~wI 180 (185)
T 2qa9_E 161 NCSSGGTTFFQPVTEALSAY 180 (185)
T ss_dssp ETTTEEEEEEEEHHHHHHHH
T ss_pred CCCCCCcEEEEEHHHHHHhh
Confidence 2 2457889988877765
No 62
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...
Probab=99.35 E-value=8.6e-12 Score=130.75 Aligned_cols=166 Identities=11% Similarity=0.078 Sum_probs=109.5
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEee-CCCcEEEEEECCCCCCccccccee----c
Q 001276 650 FFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH-PVHNFALIAYDPSSLGVAGASVVR----A 724 (1109)
Q Consensus 650 ~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~d-p~~dlAilk~d~~~l~~~~~~~v~----~ 724 (1109)
.-.+||++.. ...+||||| +|+......+. .+ + .+.|++++.| |..|+||||++...... ..+. .
T Consensus 16 ~CT~Gf~v~~-~~~~~ilTa-~Hc~~~~~~v~---~~-~-~~~g~vv~~~~~~~D~Avi~i~~~~~~~---~~v~~~g~~ 85 (198)
T 2h5c_A 16 LCSVGFSVTR-GATKGFVTA-GHCGTVNATAR---IG-G-AVVGTFAARVFPGNDRAWVSLTSAQTLL---PRVANGSSF 85 (198)
T ss_dssp EEECCEEEEE-TTEEEEEEC-GGGCCTTCEEE---ET-T-EEEEEEEEEECSBSCEEEEEECTTSEEE---EEEEETTEE
T ss_pred CCCcCEEEec-CCeeEEEEC-cccCCCCCEEE---eC-C-cEEEEEEecCCCCCCEEEEEeCCCCccC---ceEecCCce
Confidence 3468999973 246899999 55556666554 44 4 8889999999 99999999998753211 1111 1
Q ss_pred eecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCcccc-cceeEEEEecccCC-CCCceEEcCCee
Q 001276 725 AELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRA-MNMEVIELDTDFGS-TFSGVLTDEHGR 802 (1109)
Q Consensus 725 ~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~-~~~~~I~~d~~ig~-~sGGpL~d~~G~ 802 (1109)
+++.....+++|+.|+.+|+|.++ +.+.|+.+.... .|.. ....+|++|+.+++ +|||||+|.+|+
T Consensus 86 ~~v~g~~~~~vG~~V~~~G~~tg~----t~G~V~~~~~~~--------~~~~g~~~~~i~t~~~~~~GDSGGPl~~~~g~ 153 (198)
T 2h5c_A 86 VTVRGSTEAAVGAAVCRSGRTTGY----QCGTITAKNVTA--------NYAEGAVRGLTQGNACMGRGDSGGSWITSAGQ 153 (198)
T ss_dssp EECCBCCCCCTTCEEEEEETTTEE----EEEEEEEEEEEE--------EETTEEEEEEEEECSCCBTTCTTCEEECTTCB
T ss_pred EEecCcccCCCCCeEEEeecCcce----EEEEEEeeeeEE--------EeCCCeEeeeEEecccCCCCcceeEEEeeCCE
Confidence 345555568999999999999874 245555222110 1110 12368999998855 799999999999
Q ss_pred EEEEEeecc-cc--ccccCCCCCCceeEecccHHHHHHHH
Q 001276 803 VQAIWGSFS-TQ--VKFGCSSSEDHQFVRGIPIYTISRVL 839 (1109)
Q Consensus 803 VvGi~~~~~-~~--~~~g~~~~~~~~~~~aipi~~i~~~l 839 (1109)
++||+++.. .. .........+.. |++|++.++..+
T Consensus 154 ~vGI~s~~~~~~~~~~c~~~~~~g~~--f~~Pi~~vl~~~ 191 (198)
T 2h5c_A 154 AQGVMSGGNVQSNGNNCGIPASQRSS--LFERLQPILSQY 191 (198)
T ss_dssp EEEEEEEECCCTTSBSTTSCGGGCCE--EEEEHHHHHHHH
T ss_pred EEEEEEeecCccCCCccccccCCceE--EEEEHHHHHHHC
Confidence 999998743 11 000000122445 679999988754
No 63
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A
Probab=99.24 E-value=6.2e-11 Score=128.64 Aligned_cols=166 Identities=18% Similarity=0.233 Sum_probs=106.6
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCC-CcEEEEeecCC-------------eEEeEEEEEeeC---CCcEEEEEECCC
Q 001276 650 FFGTGVIIYHSQSMGLVVVDKNTVAISA-SDVMLSFAAFP-------------IEIPGEVVFLHP---VHNFALIAYDPS 712 (1109)
Q Consensus 650 ~~GsG~VId~~~~~G~IlTn~~~V~~~~-~di~V~~~d~~-------------~~~~a~vv~~dp---~~dlAilk~d~~ 712 (1109)
..|+|++|+ +++|||++|++.... ..+.|++.+ + ..+.++++..|| .+||||||++..
T Consensus 55 ~~c~G~lI~----~~~VLTAaHcv~~~~~~~~~v~~~~-G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~DiAll~l~~~ 129 (242)
T 1agj_A 55 TSATGVLIG----KNTVLTNRHIAKFANGDPSKVSFRP-SINTDDNGNTETPYGEYEVKEILQEPFGAGVDLALIRLKPD 129 (242)
T ss_dssp EEEEEEECS----SSEEEECHHHHGGGTTCGGGEEEEE-TCEECTTSCEECTTCCEEEEEEESCTTCTTSCCEEEEECCC
T ss_pred ccEEEEEEe----CCEEEEChhhcccCCCCceEEEEec-CccccccccccccCCceeEEEEEeCCCCCCCcEEEEEEcCC
Confidence 579999999 579999977664322 125566654 3 248899999999 899999999765
Q ss_pred CCCcccccceeceecCCCccCCCCCeEEEEeeCCCCcce-eeeeeEeccccccccCCCCCCcccccceeEEEEecccCC-
Q 001276 713 SLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQAT-SRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFGS- 790 (1109)
Q Consensus 713 ~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~-~~~~~vt~i~~~~~i~~~~~~~y~~~~~~~I~~d~~ig~- 790 (1109)
......-..+.++.|.++..+..|+.++++|+|.+.... .....+. .+ .+. ..++.++....
T Consensus 130 ~~~~~~~~~v~~i~L~~~~~~~~g~~~~v~Gwg~~~~~~~l~~~~~~------~~------~~~----~~~~~~~~~c~G 193 (242)
T 1agj_A 130 QNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKVNQMHRSEIE------LT------TLS----RGLRYYGFTVPG 193 (242)
T ss_dssp TTSCCHHHHSCCCEECCSTTCCTTCEEEEEECCTTTSTTCCEEEEEE------EC------CGG----GSEEEECCCCGG
T ss_pred CccccccccccceecCccccCCCCCEEEEEeCCCCCCCccceeeeee------Ee------cCC----ceEEEeCCcCCC
Confidence 310000123555788765558899999999999765421 1111111 00 011 12456666522
Q ss_pred CCCceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHH-HHHHHHHHH
Q 001276 791 TFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIY-TISRVLDKI 842 (1109)
Q Consensus 791 ~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~-~i~~~l~~l 842 (1109)
+|||||++.+|+|+||.+...+- ........+|+|++ .++++|++.
T Consensus 194 dSGGPl~~~~g~lvGI~s~g~~c------~~~~~~~~~~~~i~~~~~~~l~~~ 240 (242)
T 1agj_A 194 NSGSGIFNSNGELVGIHSSKVSH------LDREHQINYGVGIGNYVKRIINEK 240 (242)
T ss_dssp GTTCEEECTTSEEEEEEEEEEEC------SSTTCEEEEEEECCHHHHHHHHHH
T ss_pred CCchHhcccCCEEEEEEeccccc------cCcCCCceeeEEehHHHHHHHHhh
Confidence 58999999999999998763221 11223344778875 777777764
No 64
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A
Probab=99.24 E-value=6.8e-12 Score=129.99 Aligned_cols=154 Identities=20% Similarity=0.273 Sum_probs=101.1
Q ss_pred cEEE-EEEEeCC-CcEEEeCccccCCCCeEEEEEecCCeEEEEEEEEEcCCCcEEEEEEcCCCcccccccCC-----CC-
Q 001276 68 SYAT-GFVVDKR-RGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEI-----PL- 139 (1109)
Q Consensus 68 ~~GS-GfvV~~~-~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv~~d~~~DlAlLk~~~~~~~~~~l~~l-----~l- 139 (1109)
+.|| ||+|..+ ++|||||+||+... ..+.+-..+ ....+..|+||||++......-.+..+ .+
T Consensus 12 ~~ct~G~~v~~~~~~~vlTaaHc~~~~-~~~~~G~~~--------~~~~~~~DiAlikl~~~~~~~~~v~~i~~~~~~~~ 82 (181)
T 2sga_A 12 SRCSLGFNVSVNGVAHALTAGHCTNIS-ASWSIGTRT--------GTSFPNNDYGIIRHSNPAAADGRVYLYNGSYQDIT 82 (181)
T ss_dssp EEEECCEEEEETTEEEEEECHHHHTTC-SEETTEEEE--------EEECSBSCEEEEEESCGGGCCCEEECSSSCEEECC
T ss_pred CcEeccEEEEECCceEEEECcccCCCC-Cceeeccee--------CCcCCCCCEEEEEccCCCcccceEEecCCcceeec
Confidence 4566 9999731 36999999999843 222211111 133478899999998632111012211 11
Q ss_pred CCccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCCcEEEEecc
Q 001276 140 APEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAG 219 (1109)
Q Consensus 140 ~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~ 219 (1109)
....+++|+.+.++|++.+ .+.|.++..++.. .+.... .+ ..+++++..+.+|+|||||++.+ ++|||+++
T Consensus 83 ~~~~~~~G~~v~~~G~~~~----~t~G~v~~~~~~v-~~~~~~--~~-~~~i~~~~c~~~GDSGGPlv~~~-~~vGI~s~ 153 (181)
T 2sga_A 83 TAGNAFVGQAVQRSGSTTG----LRSGSVTGLNATV-NYGSSG--IV-YGMIQTNVCAQPGDSGGSLFAGS-TALGLTSG 153 (181)
T ss_dssp EECCCCTTCEEEEEETTTE----EEEEEEEEEEEEE-ECGGGC--EE-EEEEEESCCCCTTCTTCEEEETT-EEEEEEEE
T ss_pred ccccCCCCCEEEEeecCCC----ccEEEEEEeEEEE-ECCCCC--EE-eeeEecccccCCCCCCCEEEECC-EEEEEEEe
Confidence 2466799999999998865 3677887776543 121111 01 23578888889999999999876 99999987
Q ss_pred ccCC---CCCccccchHHHHHHH
Q 001276 220 SKSS---SASAFFLPLERVVRAL 239 (1109)
Q Consensus 220 ~~~~---~~~~falP~~~i~~~l 239 (1109)
+... ...+|+.|++.++..|
T Consensus 154 g~~~~~~~~~~v~~~v~~~~~~l 176 (181)
T 2sga_A 154 GSGNCRTGGTTFYQPVTEALSAY 176 (181)
T ss_dssp EEEETTTEEEEEEEEHHHHHHHH
T ss_pred eCCCCcCCCceEEEEHHHHHHhc
Confidence 6532 2468999998887765
No 65
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=99.23 E-value=2.5e-11 Score=115.53 Aligned_cols=101 Identities=22% Similarity=0.349 Sum_probs=83.1
Q ss_pred ccCCCccceEEEEcChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHH
Q 001276 257 SIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKL 335 (1109)
Q Consensus 257 ~v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l 335 (1109)
++.|+|||+.+..++...++.||++. ..|+....|++| ..|.++|||++ ||++||+|++|||+++.++.++
T Consensus 2 ~v~r~~lGi~~~~l~~~~~~~~~~~~-------~~~~~~~~gv~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~ 73 (113)
T 2pzd_A 2 SHMRRYIGVMMLTLSPSILAELQLRE-------PSFPDVQHGVLI-HKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDV 73 (113)
T ss_dssp ---CEECCEEEEECCHHHHHHHHHHC-------SSCCCCSSCEEE-EEEBTTSHHHHHTCCTTCEEEEETTEECCSHHHH
T ss_pred cccccEeEEEEEeCCHHHHHHhcccc-------ccccCCCCCeEE-EEeCCCChHHHcCCCCCCEEEEECCEECCCHHHH
Confidence 57899999999999998888888631 223334577776 69999999999 9999999999999999999999
Q ss_pred HHHHhcCCCCeEEEEEEECCEEEEEEEEeecC
Q 001276 336 ETLLDDGVDKNIELLIERGGISMTVNLVVQDL 367 (1109)
Q Consensus 336 ~~~l~~~~g~~v~l~v~R~g~~~~~~v~l~~~ 367 (1109)
...+.. ++.+.|+|.|+|+..++++++...
T Consensus 74 ~~~l~~--~~~v~l~v~R~g~~~~~~v~~~~~ 103 (113)
T 2pzd_A 74 YEAVRT--QSQLAVQIRRGRETLTLYVTPEVT 103 (113)
T ss_dssp HHHHHH--CSSEEEEEEETTEEEEEEECCEEC
T ss_pred HHHHhC--CCeEEEEEEECCEEEEEEEEEeec
Confidence 888865 688999999999998888877643
No 66
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.22 E-value=6.9e-11 Score=147.86 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=110.8
Q ss_pred ceEEEEeecCCCHHhhh--ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEE--EEEEEeeeecC
Q 001276 900 QVLRVKGCLAGSKAENM--LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGRE--IELQVGTDVRD 975 (1109)
Q Consensus 900 ~~~~V~~V~~~spA~~a--L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~--~~l~v~l~~~~ 975 (1109)
.+++|..|.+++||+++ |+.||+|++|||+.+.++............+ ..+.|+|.|++.. ..+++.+....
T Consensus 89 ~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g----~~v~l~v~R~~~~~~~~~~v~l~k~~ 164 (721)
T 2xkx_A 89 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG----SIVRLYVMRRKPPAEKVMEIKLIKGP 164 (721)
T ss_pred CCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccc----cccceEEEecccccccceeeeeeeec
Confidence 56889999999999986 9999999999999999985443332122233 7899999998854 23444443211
Q ss_pred CCCcceEEeecCccccCCchhhhhccCCCCCCCcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCCH--HHHHHHHHh
Q 001276 976 GNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKE 1052 (1109)
Q Consensus 976 ~~~t~~~~~~~G~~~~~p~~~~r~~~~lp~~~~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~l~~ 1052 (1109)
.-+|+.+...... ...+ ...|++|+.|.+||||+++| |++||.|++|||+++.++ +++...++.
T Consensus 165 --------~~lG~~i~~~~~~----~~~~-~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 231 (721)
T 2xkx_A 165 --------KGLGFSIAGGVGN----QHIP-GDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN 231 (721)
T ss_pred --------CCCceeeccCCCc----cccC-CCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHc
Confidence 1145554332110 0012 12489999999999999999 999999999999999996 678888876
Q ss_pred CCCCceEEEEEEEeCCeEE
Q 001276 1053 IEHGEFVRVRTVHLNGKPR 1071 (1109)
Q Consensus 1053 ~~~~~~v~l~~v~rdg~~~ 1071 (1109)
.++.+.|+ +.|+|...
T Consensus 232 --~~~~v~l~-V~R~g~~~ 247 (721)
T 2xkx_A 232 --TYDVVYLK-VAKPSNAY 247 (721)
T ss_pred --CCCeEEEE-EEeCCccc
Confidence 36789998 78888754
No 67
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.21 E-value=5.9e-11 Score=148.46 Aligned_cols=145 Identities=16% Similarity=0.189 Sum_probs=105.4
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHHHH-HhcCCCCeEEEEEEECCEE--EEEEEEeecCCCC
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLETL-LDDGVDKNIELLIERGGIS--MTVNLVVQDLHSI 370 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~~~-l~~~~g~~v~l~v~R~g~~--~~~~v~l~~~~~~ 370 (1109)
..|++| ..|.++|||++ | |++||+|++|||+.+.++.+.+.. +....|+.|.|+|.|++.. ..+++++...
T Consensus 88 ~~g~~V-~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~~~~~~~v~l~k~--- 163 (721)
T 2xkx_A 88 DPSIFI-TKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKG--- 163 (721)
T ss_pred CCCeEE-EEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccccccceEEEecccccccceeeeeeee---
Confidence 467777 79999999999 9 999999999999999998654432 2345688999999998854 2344554421
Q ss_pred CCCccccccceEEecCCHHHhhccCCC-CCeEEEEc--CCChhHHcC-CCCCCEEEEcCCeecCCH--HHHHHHHHhcCC
Q 001276 371 TPDYFLEVSGAVIHPLSYQQARNFRFP-CGLVYVAE--PGYMLFRAG-VPRHAIIKKFAGEEISRL--EDLISVLSKLSR 444 (1109)
Q Consensus 371 ~~~~~~~~~G~~~~~l~~~~~~~~~~~-~~gv~v~~--pg~~a~~aG-l~~GD~I~~Vng~~v~~l--~~~~~~i~~~~~ 444 (1109)
....|+.+....... ..+ ..|++|.. ++++|+++| |++||+|++|||+++.++ .+++..++..
T Consensus 164 -----~~~lG~~i~~~~~~~----~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-- 232 (721)
T 2xkx_A 164 -----PKGLGFSIAGGVGNQ----HIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT-- 232 (721)
T ss_pred -----cCCCceeeccCCCcc----ccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcC--
Confidence 112466655432211 011 35899884 899999999 999999999999999996 5777777653
Q ss_pred CCeEeEEEEee
Q 001276 445 GARVPIEYSSY 455 (1109)
Q Consensus 445 g~~v~l~~~~~ 455 (1109)
|+.|.|++.|-
T Consensus 233 ~~~v~l~V~R~ 243 (721)
T 2xkx_A 233 YDVVYLKVAKP 243 (721)
T ss_pred CCeEEEEEEeC
Confidence 45666666553
No 68
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=99.20 E-value=4.9e-12 Score=146.57 Aligned_cols=131 Identities=16% Similarity=0.209 Sum_probs=50.9
Q ss_pred eEEEEeecCCCHHhhh--ccCCCEEEEECCEEcCCh--hHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeeeecCC
Q 001276 901 VLRVKGCLAGSKAENM--LEQGDMMLAINKQPVTCF--HDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRDG 976 (1109)
Q Consensus 901 ~~~V~~V~~~spA~~a--L~~GDiIlsVnG~~V~~~--~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l~v~l~~~~~ 976 (1109)
+++|..|.++|||+++ |+.||+|++|||+.+.+| .++..++.....+ ..+.++|.|++...++.+.....
T Consensus 233 g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~----~~v~l~v~r~~~~~~v~l~~~~~-- 306 (388)
T 3suz_A 233 TVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQ----TQVKLNIVSCPPVTTVLIKRPDL-- 306 (388)
T ss_dssp CCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTC----SCEEEEEEECCSCC-----------
T ss_pred CEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCC----CccccccccccccceeeEeecCC--
Confidence 4679999999999987 999999999999999998 6677666443333 67999999998776655532110
Q ss_pred CCcceEEeecCccccCCchhhhhccCCCCCCCcEEEEEecCCChhhhcCCCCCCeEEEECCeeCC--CHHHHHHHHHhCC
Q 001276 977 NGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIE 1054 (1109)
Q Consensus 977 ~~t~~~~~~~G~~~~~p~~~~r~~~~lp~~~~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~l~~~~ 1054 (1109)
...+|+.+ . +.+|..|.+||||+++||++||.|++|||+++. +++++.+.+++
T Consensus 307 ------~~~lG~~i--------------~---~g~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~-- 361 (388)
T 3suz_A 307 ------KYQLGFSV--------------Q---NGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSN-- 361 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------CCccceEE--------------e---cCEEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh--
Confidence 01123321 1 237899999999999999999999999999997 56899999987
Q ss_pred CCceEEEE
Q 001276 1055 HGEFVRVR 1062 (1109)
Q Consensus 1055 ~~~~v~l~ 1062 (1109)
.+..+.|+
T Consensus 362 ~~~~v~L~ 369 (388)
T 3suz_A 362 SVGEIHMK 369 (388)
T ss_dssp --------
T ss_pred CCCeEEEE
Confidence 35667776
No 69
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=99.19 E-value=4.7e-11 Score=113.46 Aligned_cols=101 Identities=18% Similarity=0.297 Sum_probs=83.6
Q ss_pred ccCCCccceEEEEcChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHH
Q 001276 257 SIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKL 335 (1109)
Q Consensus 257 ~v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l 335 (1109)
.+.|+|||+.++..+...++.||++. ..++....|++| ..|.++|||++ ||++||+|++|||+++.++.++
T Consensus 2 ~v~~~~lGi~~~~l~~~~~~~~~~~~-------~~~~~~~~gv~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~ 73 (112)
T 2p3w_A 2 SHMKRFIGIRMRTITPSLVDELKASN-------PDFPEVSSGIYV-QEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSEL 73 (112)
T ss_dssp CCCEEECCEEEEECCHHHHHHHHHHC-------TTC--CCSSEEE-EEECTTSHHHHHTCCTTCEEEEETTEECCSHHHH
T ss_pred CcccceeeEEEecCCHHHHHHhcccC-------cCcccCCCCeEE-EEECCCChHHHCCCCCCCEEEEECCEECCCHHHH
Confidence 57899999999999988888887641 112223578777 69999999999 9999999999999999999999
Q ss_pred HHHHhcCCCCeEEEEEEECCEEEEEEEEeecC
Q 001276 336 ETLLDDGVDKNIELLIERGGISMTVNLVVQDL 367 (1109)
Q Consensus 336 ~~~l~~~~g~~v~l~v~R~g~~~~~~v~l~~~ 367 (1109)
...+. .|+.+.|+|.|+|+.+++++++...
T Consensus 74 ~~~l~--~g~~v~l~v~R~g~~~~~~v~~~~~ 103 (112)
T 2p3w_A 74 QEAVL--TESPLLLEVRRGNDDLLFSIAPEVV 103 (112)
T ss_dssp HHHHH--HCSSEEEEEEETTEEEEEEECCEEE
T ss_pred HHHHh--CCCeEEEEEEECCEEEEEEEEEeee
Confidence 88873 4788999999999998888877654
No 70
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=99.16 E-value=8.3e-12 Score=144.67 Aligned_cols=130 Identities=19% Similarity=0.238 Sum_probs=51.6
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcC-CCCeEEEEEEECCEEEEEEEEeecCCCCC
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDG-VDKNIELLIERGGISMTVNLVVQDLHSIT 371 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~-~g~~v~l~v~R~g~~~~~~v~l~~~~~~~ 371 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++.+| .++..++... .+..++|+|.|++...++.+...+.
T Consensus 232 ~g~~V-~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~~~~v~l~~~~~---- 306 (388)
T 3suz_A 232 PTVIL-ANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDL---- 306 (388)
T ss_dssp CCCBC-CCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEECCSCC-------------
T ss_pred CCEEE-EeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCccccccccccccceeeEeecCC----
Confidence 34666 79999999999 8 999999999999999998 5667777553 6678999999988766654432111
Q ss_pred CCccccccceEEecCCHHHhhccCCCCCeEEEE--cCCChhHHcCCCCCCEEEEcCCeecC--CHHHHHHHHHhcCCCCe
Q 001276 372 PDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVA--EPGYMLFRAGVPRHAIIKKFAGEEIS--RLEDLISVLSKLSRGAR 447 (1109)
Q Consensus 372 ~~~~~~~~G~~~~~l~~~~~~~~~~~~~gv~v~--~pg~~a~~aGl~~GD~I~~Vng~~v~--~l~~~~~~i~~~~~g~~ 447 (1109)
....|+. ..+.+|. .++|+|+++||++||+|++|||+++. +++++++.++.. +..
T Consensus 307 ----~~~lG~~---------------i~~g~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~--~~~ 365 (388)
T 3suz_A 307 ----KYQLGFS---------------VQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNS--VGE 365 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----CCccceE---------------EecCEEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCe
Confidence 0112322 2223554 48999999999999999999999997 568888888873 444
Q ss_pred EeEEE
Q 001276 448 VPIEY 452 (1109)
Q Consensus 448 v~l~~ 452 (1109)
+.|++
T Consensus 366 v~L~V 370 (388)
T 3suz_A 366 IHMKT 370 (388)
T ss_dssp -----
T ss_pred EEEEE
Confidence 55544
No 71
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A
Probab=99.15 E-value=2.6e-11 Score=122.88 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=72.9
Q ss_pred CccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecCCeEEEEEEEEEcCCCcEEEEEEcC--CCcccccccCCCCCCcc
Q 001276 66 GASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDP--SAIQFLNYDEIPLAPEA 143 (1109)
Q Consensus 66 ~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~vv~~d~~~DlAlLk~~~--~~~~~~~l~~l~l~~~~ 143 (1109)
..+.|+||.++. +++|||++|||.+. .. .++ .++..+. +++|+..|+|++++.. ..+|.+++.. ..
T Consensus 28 ~~GsGt~F~i~g-~~~VvTA~HVVg~~-~~-vVt-~~g~r~~---~~f~~~~D~All~i~~~~g~~P~lKlA~-----~~ 95 (213)
T 3fan_A 28 SMGSGGVFTIDG-KIKCVTAAHVLTGN-SA-RVS-GVGFNQM---LDFDVKGDFAIADCPNWQGVAPKAQFCE-----DG 95 (213)
T ss_dssp SEEEEEEEEETT-EEEEEEEGGGSBTT-EE-EEE-ETTEEEE---EECEEETTEEEEECTTCCSCCCBCCBCC-----TT
T ss_pred CCCceEEEEECC-cEEEEEeccEeCCC-CE-EEe-cCCcEEE---EEecCCCcEEEEEccCcCCCCCcceeee-----ee
Confidence 467889999986 67999999999954 33 444 5565554 4789999999999963 4455555542 11
Q ss_pred CCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCCCCCceecCCCcEEEEecccc
Q 001276 144 ACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 144 ~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
..|...+..-+ -+..|.+. . ++ .+.. .++|+|||||+|.+|+||||+++..
T Consensus 96 -~~G~a~~~~~~------gv~~G~i~----~----------~~---al~~---T~pGdSGsPVvn~dG~VIGVHt~s~ 146 (213)
T 3fan_A 96 -WTGRAYWLTSS------GVEPGVIG----N----------GF---AFCF---TACGDSGSPVITEAGELVGVHTGSN 146 (213)
T ss_dssp -CCEEEEEEETT------EEEEEEEE----T----------TE---EEES---SCCCSTTCEEEETTSCEEEEEEC--
T ss_pred -ccCceEEEEcc------Cccccccc----c----------CC---EEEe---cCCCCCCCccCCCCCcEEEEEeccC
Confidence 11112111111 11222222 0 00 0111 2689999999999999999998754
No 72
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A
Probab=99.14 E-value=1.4e-10 Score=121.97 Aligned_cols=137 Identities=12% Similarity=0.101 Sum_probs=91.9
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCC---CcEEEEe----ecCCeEEeE-EEEEeeCCCcEEEEEECCCCCCc-cccc
Q 001276 650 FFGTGVIIYHSQSMGLVVVDKNTVAISA---SDVMLSF----AAFPIEIPG-EVVFLHPVHNFALIAYDPSSLGV-AGAS 720 (1109)
Q Consensus 650 ~~GsG~VId~~~~~G~IlTn~~~V~~~~---~di~V~~----~d~~~~~~a-~vv~~dp~~dlAilk~d~~~l~~-~~~~ 720 (1109)
..|+|++|+ +++|||++|++.... ..+.+.+ .+ +..+++ +++..|+..||||||++...+++ ..-.
T Consensus 22 ~~c~G~lI~----~~~VLTaaHcv~~~~~~~~~v~v~~~~~~~~-~~~~~~~~i~~~~~~~DiAll~l~~~~~~~~~~~~ 96 (200)
T 2w7s_A 22 VGGTGVVVG----KNTIVTNKHIAKSNDIFKNRVSAHHSSKGKG-GGNYDVKDIVEYPGKEDLAIVHVHETSTEGLNFNK 96 (200)
T ss_dssp TTEEEEEEE----TTEEEECHHHHHHHHHTTCCEEETCCSSSCC-CCEECEEEEEECSSSSSCEEEEECSBCTTSCBGGG
T ss_pred ceEEEEEEE----CCEEEEChhhcCCcccCCcEEEEEecCccCC-CcEEEEEEEecCCCcceEEEEEECCCCCCcccccc
Confidence 369999999 579999977653211 2355544 33 667887 58888999999999997653321 1112
Q ss_pred ceeceecCCCccCCCCCeEEEEeeCCCCccee----eeeeEeccccccccCCCCCCcccccceeEEEEecccC-CCCCce
Q 001276 721 VVRAAELLPEPALRRGDSVYLVGLSRSLQATS----RKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFG-STFSGV 795 (1109)
Q Consensus 721 ~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~----~~~~vt~i~~~~~i~~~~~~~y~~~~~~~I~~d~~ig-~~sGGp 795 (1109)
.++++.|.. .+..|+.++++|+|.+..... ..+.++ .. + ..+++.++... ..||||
T Consensus 97 ~v~pi~l~~--~~~~g~~v~v~G~p~g~~~~~~~~~~~g~v~---------~~----~----~~~~~~~~~~~~GdSGGP 157 (200)
T 2w7s_A 97 NVSYTKFAD--GAKVKDRISVIGYPKGAQTKYKMFESTGTIN---------HI----S----GTFMEFDAYAQPGNSGSP 157 (200)
T ss_dssp SCCCCCBCC--CCCTTCEEEEEECTTHHHHTSCEEEEEEEEE---------EE----E----TTEEEECSCCCTTCTTCE
T ss_pred cccceeccc--cCCCCCEEEEEECCCCCCCccceEEeEEEEE---------cc----C----CCEEEEcceeCCCCccCe
Confidence 466677753 378999999999997543211 222332 11 1 13467777663 259999
Q ss_pred EEcCCeeEEEEEeec
Q 001276 796 LTDEHGRVQAIWGSF 810 (1109)
Q Consensus 796 L~d~~G~VvGi~~~~ 810 (1109)
|++.+|+|+||.+..
T Consensus 158 l~~~~g~lvGI~s~g 172 (200)
T 2w7s_A 158 VLNSKHELIGILYAG 172 (200)
T ss_dssp EECTTSCEEEEEEEE
T ss_pred EECcCCEEEEEEecc
Confidence 999999999998763
No 73
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Probab=99.12 E-value=2.8e-10 Score=118.23 Aligned_cols=158 Identities=11% Similarity=0.020 Sum_probs=102.8
Q ss_pred eeEEEEEEEeeCCce--EEEEeCceecCCCCcEEEEeecCCeEEeEEEEEee-CCCcEEEEEECCCCCCccccccee---
Q 001276 650 FFGTGVIIYHSQSMG--LVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH-PVHNFALIAYDPSSLGVAGASVVR--- 723 (1109)
Q Consensus 650 ~~GsG~VId~~~~~G--~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~d-p~~dlAilk~d~~~l~~~~~~~v~--- 723 (1109)
.-.+||++.. ++| |||||.| +..+...+ ++. . +.|++++.| |..|+||||++...... ..|.
T Consensus 14 ~CTsGf~v~~--~~G~~~ilTa~H-c~~~g~~v--~~~--d--~~g~v~~~~~p~~DiAlikl~~~~~~~---~~v~~~g 81 (188)
T 2oua_A 14 RCSVGFAATN--ASGQPGFVTAGH-CGSVGTQV--SIG--N--GRGVFERSVFPGNDAAFVRGTSNFTLT---NLVSRYN 81 (188)
T ss_dssp EEECCEEEEC--TTCCEEEEECGG-GCCTTCEE--EET--T--EEEEEEEEECSBSCEEEEEEEESCEEE---EEEECGG
T ss_pred cEecCEEEEe--CCCCEEEEECcc-cCCCCCEE--Eec--C--ceEEEEeeCCCCCCEEEEEeCCCCccc---cceeecC
Confidence 4578999972 466 9999955 44444333 344 3 899999999 99999999997654221 1122
Q ss_pred ---ceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCcccc-cceeEEEEecccCC-CCCceEEc
Q 001276 724 ---AAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRA-MNMEVIELDTDFGS-TFSGVLTD 798 (1109)
Q Consensus 724 ---~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~-~~~~~I~~d~~ig~-~sGGpL~d 798 (1109)
.+++..+..+++|+.|+.+|++.+. +.+.|+.+.... .|.. ....+++.+...++ .|||||+.
T Consensus 82 ~~~~~~l~~~~~~~vG~~v~~~G~~tG~----t~G~v~~~~~~v--------~~~~~~~~~~~~~~~~~~~GDSGgpl~~ 149 (188)
T 2oua_A 82 SGGYATVSGSSTAPIGSQVCRSGSTTGW----YCGTIQARNQTV--------SYPQGTVHSLTRTSVCAEPGDSGGSFIS 149 (188)
T ss_dssp GCSEEECCBCCCCCTTCEEEEEETTTEE----EEEEEEEEEEEE--------EETTEEEEEEEEESCCCCTTCTTCEEEE
T ss_pred CcceEeccCccCCCCCCeEEEEEcCCCe----EEEEEEEEeeEE--------EeCCCcEeeeEeeeeecCCCCccceEEE
Confidence 2456666668999999999999774 245555222111 1110 11256788877644 69999994
Q ss_pred CCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHH
Q 001276 799 EHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVL 839 (1109)
Q Consensus 799 ~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l 839 (1109)
+|+++||++..... ....+.. |++|++.+++.+
T Consensus 150 -~~~~vGi~s~~~~~-----~~~~~~~--~~~pi~~~l~~~ 182 (188)
T 2oua_A 150 -GTQAQGVTSGGSGN-----CRTGGTT--FYQEVNPMLNSW 182 (188)
T ss_dssp -TTEEEEEEEEEEEE-----TTTEEEE--EEEESHHHHHHT
T ss_pred -CCEEEEEEeccCCC-----CCCCCce--EEEEHHHHHHHc
Confidence 88999998874321 1122344 669998887643
No 74
>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}
Probab=99.12 E-value=5.6e-10 Score=115.08 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=107.7
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCc--EEEeCccccCCCCeEEEEEecCCeEEE-----EEEEEEcCCCc
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRG--IILTNRHVVKPGPVVAEAMFVNREEIP-----VYPIYRDPVHD 118 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G--~IlTn~HVv~~~~~~~~v~~~~~~~~~-----a~vv~~d~~~D 118 (1109)
..+||.|... . ...|+|++|.. +| +|||++||+..+.. ......++..++ .++-..|+..|
T Consensus 15 P~svv~l~~~--------d--~h~G~g~~V~~-~G~~~LlTA~Hv~~~~~~-~~~~~k~g~~ip~~~~~~~~~~~d~~~D 82 (191)
T 1zyo_A 15 PASLVAIKSG--------P--TTIGFGCRTKI-DGEDCLLTAHHVWCNSMR-PTGLAKAGKQVSVEDWEISMSSSDKMLD 82 (191)
T ss_dssp CSSEEEEEET--------T--EEEEEEEEEEC---CEEEEECHHHHTSSSC-CCEEEETTEEEECCSCEEEEEECCTTTC
T ss_pred CCeEEEEEeC--------C--eEEEEEEEEEE-CCCcEEEEChhhCcCCcc-eeeecCCCCEEEcccceeeEccCCCCCc
Confidence 3467877762 1 56789999973 45 99999999985432 223344665544 44445578899
Q ss_pred EEEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccC
Q 001276 119 FGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTK 198 (1109)
Q Consensus 119 lAlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~ 198 (1109)
|||+++.+.--..+....+.|.+ +..++.|.++|+|....+....|+....+. ..+++..+.+.
T Consensus 83 ~all~vp~~~~s~lg~~~a~~~~--~~~~~~vt~yg~~~~~~~~s~~g~~~~~~~--------------~~~~~~~~~T~ 146 (191)
T 1zyo_A 83 FAIVRVPTHVWSKLGVKSTPLVC--PSSKDVITCYGGSSSDCLMSGVGSSSTSEF--------------TWKLTHTCPTA 146 (191)
T ss_dssp EEEEECCHHHHHHHTCCCCCBCC--CCSCEEEEEEEESSTTSEEEEEEEEEECSS--------------TTEEEECCCCC
T ss_pred EEEEEcCCChhhhcCcceeEeec--CCCCccEEEEeecCCCCEeecccceeeccC--------------CcEEEEEcCCC
Confidence 99999976421112233333332 336999999999876555444553222211 11489999999
Q ss_pred CCCCCCceecCCCcEEEEeccccCCCCCccccchHHHHHH
Q 001276 199 GGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRA 238 (1109)
Q Consensus 199 ~G~SGgPv~n~~G~vVGi~~~~~~~~~~~falP~~~i~~~ 238 (1109)
+|.||+|+||.+ .+|||+.+.......+.++-+..++.+
T Consensus 147 ~G~SGsP~~ng~-~IVGvh~G~~~~~~~N~a~n~~~~~~~ 185 (191)
T 1zyo_A 147 AGWSGTPLYSSR-GVVGMHVGFEEIGKLNRGVNMFYVANY 185 (191)
T ss_dssp TTCTTCEEECSS-CEEEEEEEEEETTTEEEEECHHHHHHH
T ss_pred CCCCCCcEEcCC-eEEEEEeCcccCCceeeeeehHHHhhh
Confidence 999999999975 788999987555566777766666664
No 75
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Probab=99.09 E-value=1.8e-10 Score=125.38 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=88.0
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCC---CcEEEEeecC-----------CeEEeEEEEEeeC---CCcEEEEEECCC
Q 001276 650 FFGTGVIIYHSQSMGLVVVDKNTVAISA---SDVMLSFAAF-----------PIEIPGEVVFLHP---VHNFALIAYDPS 712 (1109)
Q Consensus 650 ~~GsG~VId~~~~~G~IlTn~~~V~~~~---~di~V~~~d~-----------~~~~~a~vv~~dp---~~dlAilk~d~~ 712 (1109)
..|+|++|+ +++|||++|++.... ..+.+..... ...+.++.+..|| .+|||||+++..
T Consensus 48 ~~c~G~lI~----~~~VLTAaHcv~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~i~~hp~~~~~DiALLkl~~~ 123 (246)
T 1qtf_A 48 TLATGVLIG----KNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIKLKPN 123 (246)
T ss_dssp EEEEEEEEE----TTEEEECHHHHGGGTTCGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCTTCTTSCCEEEEECCC
T ss_pred ceEEEEEEE----CCEEEECHHhCCCCCCCceEEEEecCccccccccccccCCceEEEEEEEeCCCCCCCCEEEEEEeCC
Confidence 579999999 579999977664322 2344443210 0378899999999 999999999765
Q ss_pred CCCcccccceeceecCCCccCCCCCeEEEEeeCCCCccee-eeeeEeccccccccCCCCCCcccccceeEEEEecccC-C
Q 001276 713 SLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATS-RKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFG-S 790 (1109)
Q Consensus 713 ~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~-~~~~vt~i~~~~~i~~~~~~~y~~~~~~~I~~d~~ig-~ 790 (1109)
......-..+.++.|.++..+..|+.++++|+|.+..... ....+. +.. . ++.++.+. .
T Consensus 124 ~~~~~~~~~v~~i~L~~~~~~~~g~~v~v~G~p~g~~~~~~~~~~~~-------~~~----~--------~~~~~~~~~G 184 (246)
T 1qtf_A 124 EKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSAYSLYQSQIE-------MFN----D--------SQYFGYTEVG 184 (246)
T ss_dssp TTSCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTTSTTCCEEEEEE-------ESS----S--------SBEESCCCGG
T ss_pred ccccccccceeeeecCCccccCCCCEEEEEECCCCCCCceeEeeeee-------ecC----c--------EEEeCCCCCC
Confidence 3110000134557887655578999999999998764210 001111 000 1 12233332 2
Q ss_pred CCCceEEcCCeeEEEEEee
Q 001276 791 TFSGVLTDEHGRVQAIWGS 809 (1109)
Q Consensus 791 ~sGGpL~d~~G~VvGi~~~ 809 (1109)
+|||||+|.+|+|+||.+.
T Consensus 185 dSGGPlv~~~g~lvGI~s~ 203 (246)
T 1qtf_A 185 NSGSGIFNLKGELIGIHSG 203 (246)
T ss_dssp GTTCEEECTTCCEEEEEEE
T ss_pred CchhheECCCCEEEEEEec
Confidence 4899999999999999876
No 76
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A
Probab=99.08 E-value=2.6e-09 Score=118.03 Aligned_cols=175 Identities=15% Similarity=0.202 Sum_probs=110.3
Q ss_pred ccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCC---CcEEEEeec-------CCeEEeEEEE
Q 001276 627 PTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISA---SDVMLSFAA-------FPIEIPGEVV 696 (1109)
Q Consensus 627 ~SvV~V~~~~~~~~~~dg~~~~~~~GsG~VId~~~~~G~IlTn~~~V~~~~---~di~V~~~d-------~~~~~~a~vv 696 (1109)
+++|+|..... .....|+|++|+ ..+|||++|+|.... ..+.|.+.. .+....++++
T Consensus 20 ~~~v~i~~~~~---------~~~~~C~G~lI~----~~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g~~~~~~i~ 86 (274)
T 2o8l_A 20 APVTYIQVEAP---------TGTFIASGVVVG----KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQIT 86 (274)
T ss_dssp TTEEEEEEEET---------TEEEEEEEEEEE----TTEEEECHHHHHTTTTCGGGEEEEETCCBTTBCTTCCEEEEEEE
T ss_pred ceEEEEEEEcC---------CCCEEEEEEEEE----CCEEEEChhhCcccCCCcceEEEEecccCcccccCccEEEEEEE
Confidence 55666655433 234689999999 569999977764432 237775431 1445566777
Q ss_pred EeeCCCcEEEEEECCCC----CCcccccceeceecCCCccCCCCCeEEEEeeCCCCcce---eeeeeEeccccccccCCC
Q 001276 697 FLHPVHNFALIAYDPSS----LGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQAT---SRKSIVTNPCAALNISSA 769 (1109)
Q Consensus 697 ~~dp~~dlAilk~d~~~----l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~---~~~~~vt~i~~~~~i~~~ 769 (1109)
..+..+||||||++... +. ..+.++.|.....+..|+.++++|+|.+.... ...+.++ ..
T Consensus 87 ~~~~~~DIALLkL~~~~~~~~~~----~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~~~~~~~~~g~i~---------~~ 153 (274)
T 2o8l_A 87 KYSGEGDLAIVKFSPNEQNKHIG----EVVKPATMSNNAETQTNQNITVTGYPGDKPVATMWESKGKIT---------YL 153 (274)
T ss_dssp ECSSSSCCEEEEECCCTTSCCTT----TSSCCCEECCCTTCCTTCEEEEEECCTTSSTTCEEEEEEEEE---------EE
T ss_pred eCCCCCcEEEEEecCcccccccc----cccccccccccccccCCCEEEEEECCCCCCCceEEecCceEE---------ec
Confidence 77788999999997543 22 34566788765557899999999999765321 1122222 10
Q ss_pred CCCcccccceeEEEEeccc-CCCCCceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHHHHHHcC
Q 001276 770 DCPRYRAMNMEVIELDTDF-GSTFSGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISG 845 (1109)
Q Consensus 770 ~~~~y~~~~~~~I~~d~~i-g~~sGGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l~~~ 845 (1109)
...+++.++.. ...|||||++.+|+|+||.+..... ..... +.+. ..++.+|++....
T Consensus 154 --------~~~~i~~~~~~c~GdSGGPLv~~~g~lvGIvS~G~~~-------~~~~~--~~~~-~~~~~wI~~~i~~ 212 (274)
T 2o8l_A 154 --------KGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPN-------EFNGA--VFIN-ENVRNFLKQNIED 212 (274)
T ss_dssp --------ETTEEEESCCCCTTCTTCEEECTTSCEEEEEEEEETT-------TEEEE--EECC-HHHHHHHHHHCTT
T ss_pred --------CCCeEEeCcccCCCCchhheeccCCeEEEEEeCcccC-------CCCce--EEec-HHHHHHHHHHHhh
Confidence 11345666665 2258999999999999998763221 11223 3353 5566666665443
No 77
>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1
Probab=99.06 E-value=1.4e-09 Score=113.06 Aligned_cols=161 Identities=11% Similarity=0.089 Sum_probs=103.2
Q ss_pred eEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEee-CCCcEEEEEECCCCCCccccccee-----c
Q 001276 651 FGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH-PVHNFALIAYDPSSLGVAGASVVR-----A 724 (1109)
Q Consensus 651 ~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~d-p~~dlAilk~d~~~l~~~~~~~v~-----~ 724 (1109)
-.+||+++. +..+||||| +||..+...+ ++.+ +....+++.+.+ |..|+||||++...... ..+. .
T Consensus 14 CT~Gfiv~~-~g~~~ilT~-~Hv~~~~~~v--~~~~-~~~~~g~~~~~~~~~~DiAlikl~~~~~~~---~~v~~~~g~~ 85 (187)
T 1hpg_A 14 CSAAFNVTK-GGARYFVTA-GHCTNISANW--SASS-GGSVVGVREGTSFPTNDYGIVRYTDGSSPA---GTVDLYNGST 85 (187)
T ss_dssp EECCEEEEE-TTEEEEEEC-HHHHTTCSEE--ESST-TCCEEEEEEEEECSBSCEEEEEECSSCCCC---SEEECSSSCE
T ss_pred CcceEEEEE-CCeeEEEEC-cccCCCCCeE--EeCC-CceeEEEEeCccCCCCCEEEEEeCCCCCcC---ceEEecCCce
Confidence 356999984 345899999 5566666644 4555 555557887777 88999999997642211 1111 1
Q ss_pred eecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCccc-ccceeEEEEecccCC-CCCceEEcCCee
Q 001276 725 AELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYR-AMNMEVIELDTDFGS-TFSGVLTDEHGR 802 (1109)
Q Consensus 725 ~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~-~~~~~~I~~d~~ig~-~sGGpL~d~~G~ 802 (1109)
..+..+..++.|+.|+++|++.+. +.+.|+.+.... .|. .....+|++|+.+++ +|||||++.+ +
T Consensus 86 ~~i~~~~~~~~G~~v~~~G~~~g~----t~G~v~~~~~~v--------~~~~~~~~~~i~t~~~~~~GdSGgpl~~~~-~ 152 (187)
T 1hpg_A 86 QDISSAANAVVGQAIKKSGSTTKV----TSGTVTAVNVTV--------NYGDGPVYNMVRTTACSAGGDSGGAHFAGS-V 152 (187)
T ss_dssp EECCEECCCCTTCEEEEEETTTEE----EEEEEEEEEEEE--------EETTEEEEEEEEECCCCCTTCTTCEEEETT-E
T ss_pred eeeccccCCCCCCEEEEEEcCCCE----eEEEEEEeEEEE--------EeCCCeEeeeEEeccccCCCCCCCeEEECC-E
Confidence 234444458999999999999763 245555222111 111 113468999988744 6999999975 9
Q ss_pred EEEEEeeccccccccCCCCCCceeEecccHHHHHHHH
Q 001276 803 VQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVL 839 (1109)
Q Consensus 803 VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l 839 (1109)
++||++..... ....... +++|++.++..+
T Consensus 153 ~vGi~s~~~~~-----~~~~~~~--~~~~i~~~~~~l 182 (187)
T 1hpg_A 153 ALGIHSGSSGC-----SGTAGSA--IHQPVTEALSAY 182 (187)
T ss_dssp EEEEEEEESCC-----BTTBCCC--EEEEHHHHHHHH
T ss_pred EEEEEEeeCCC-----CCCCCce--EEEEHHHHHHHc
Confidence 99998764321 1123445 569998887644
No 78
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=99.05 E-value=4e-10 Score=107.16 Aligned_cols=100 Identities=20% Similarity=0.358 Sum_probs=80.5
Q ss_pred eecCccccCCchhhhhc-cC----CCCCCCcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCce
Q 001276 984 NWCGCIVQDPHPAVRAL-GF----LPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEF 1058 (1109)
Q Consensus 984 ~~~G~~~~~p~~~~r~~-~~----lp~~~~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~ 1058 (1109)
.|+|+.++.+....++. +. .+....|++|..|.++|||+++||++||.|++|||+++.++++|.+.++. ++.
T Consensus 6 ~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~---~~~ 82 (113)
T 2pzd_A 6 RYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT---QSQ 82 (113)
T ss_dssp EECCEEEEECCHHHHHHHHHHCSSCCCCSSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHHH---CSS
T ss_pred cEeEEEEEeCCHHHHHHhccccccccCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHhC---CCe
Confidence 46788888887766652 21 12224589999999999999999999999999999999999999999986 678
Q ss_pred EEEEEEEeCCeEEEEEEeeCCccCcceEE
Q 001276 1059 VRVRTVHLNGKPRVLTLKQDLHYWPTWEL 1087 (1109)
Q Consensus 1059 v~l~~v~rdg~~~~i~lk~~~~y~pt~e~ 1087 (1109)
+.|+ +.|+|+.+.+++++.....++|.+
T Consensus 83 v~l~-v~R~g~~~~~~v~~~~~~~~~~~~ 110 (113)
T 2pzd_A 83 LAVQ-IRRGRETLTLYVTPEVTEGGGWTM 110 (113)
T ss_dssp EEEE-EEETTEEEEEEECCEEC---CCCC
T ss_pred EEEE-EEECCEEEEEEEEEeeccCCcEEE
Confidence 9998 789999999999987766666554
No 79
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.05 E-value=1e-10 Score=113.87 Aligned_cols=112 Identities=15% Similarity=0.197 Sum_probs=85.8
Q ss_pred CCeEEEEEEeCCEEEEEEEeeeecCCCCcceEEeecCccccCCchhhhhccCCCCCCCcEEEEEecCCChhhhcCCCCCC
Q 001276 951 NGKLDITIFRQGREIELQVGTDVRDGNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQ 1030 (1109)
Q Consensus 951 ~~~v~l~V~R~g~~~~l~v~l~~~~~~~t~~~~~~~G~~~~~p~~~~r~~~~lp~~~~gV~V~~v~~gSPA~~~GL~~gD 1030 (1109)
++++.++|+|+|+++++++++... ..+|+.+.... ... .+++|..|.++|||+++||++||
T Consensus 8 g~~v~l~v~R~g~~~~v~v~~~~~---------~~lG~~~~~~~-------~~~---~gv~V~~V~~~spA~~aGL~~GD 68 (128)
T 1uf1_A 8 DRRSTLHLLQGGDEKKVNLVLGDG---------RSLGLTIRGGA-------EYG---LGIYITGVDPGSEAEGSGLKVGD 68 (128)
T ss_dssp TTSCCSCCCCCSSEEEEEEECCSS---------CCCCEEEECCT-------TTT---CCCEEEEECTTCHHHHHTCCTTC
T ss_pred CCEEEEEEEeCCcEEEEEEEECCC---------CccCEEEECcc-------cCC---CCEEEEEECCCCHHHHCCCCCCC
Confidence 477899999999999999987532 12466554421 011 27899999999999999999999
Q ss_pred eEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEeeCCccCc
Q 001276 1031 WIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQDLHYWP 1083 (1109)
Q Consensus 1031 ~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk~~~~y~p 1083 (1109)
.|++|||+++.++.+ .++++.+..++.+.|+ +.|+|....+++++...-|.
T Consensus 69 ~I~~vng~~v~~~~~-~~~~~~~~~~~~v~l~-v~R~g~~~~~~v~~~~~~w~ 119 (128)
T 1uf1_A 69 QILEVNGRSFLNILH-DEAVRLLKSSRHLILT-VKDVGRLPHARTTVDETKWI 119 (128)
T ss_dssp EEEEETTEECSSCCH-HHHHHHHTTCSEEEEE-EECCSCCSSCSCCCCSSCSC
T ss_pred EEEEECCEECCCCCH-HHHHHHHhcCCeEEEE-EEECCcccccccccccccee
Confidence 999999999999754 4444444457789998 78999988777777666554
No 80
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1
Probab=99.02 E-value=4e-09 Score=116.11 Aligned_cols=166 Identities=13% Similarity=0.126 Sum_probs=104.0
Q ss_pred eeeEEEEEEEeeCCceEEEEeCceecCCC---CcEEEEeec-------CCeEEeEEEEEeeCCCcEEEEEECCCCCCccc
Q 001276 649 HFFGTGVIIYHSQSMGLVVVDKNTVAISA---SDVMLSFAA-------FPIEIPGEVVFLHPVHNFALIAYDPSSLGVAG 718 (1109)
Q Consensus 649 ~~~GsG~VId~~~~~G~IlTn~~~V~~~~---~di~V~~~d-------~~~~~~a~vv~~dp~~dlAilk~d~~~l~~~~ 718 (1109)
...|+|++|+ ..+|||++|++.... ..+.|.+.. .+....++++..+..+||||||++........
T Consensus 33 ~~~CgG~lI~----~~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g~~~~~~i~~~~~~~DIALLkL~~~~~~~~~ 108 (268)
T 1wcz_A 33 TFIASGVVVG----KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHI 108 (268)
T ss_dssp EEEEEEEECS----SSEEEECHHHHGGGTTCGGGEEEEETCCBTTBCTTCCEEEEEEEECSSSSCCEEEEECCCTTSCCH
T ss_pred CEEEEEEEEE----CCEEEEChhhCCCccCCcceEEEEecccCcccccCCcEEEEEEecCCCCCcEEEEEecCccccccc
Confidence 4689999999 569999977664322 247775431 14455677777778899999999765310000
Q ss_pred ccceeceecCCCccCCCCCeEEEEeeCCCCcce---eeeeeEeccccccccCCCCCCcccccceeEEEEecccC-CCCCc
Q 001276 719 ASVVRAAELLPEPALRRGDSVYLVGLSRSLQAT---SRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFG-STFSG 794 (1109)
Q Consensus 719 ~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~---~~~~~vt~i~~~~~i~~~~~~~y~~~~~~~I~~d~~ig-~~sGG 794 (1109)
-..+.++.|.....+..|+.++++|++.+.... ...+.++ .. ...+++.++... ..|||
T Consensus 109 ~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~~~~~~~~~g~i~---------~~--------~~~~i~~~~~~c~GdSGG 171 (268)
T 1wcz_A 109 GEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKIT---------YL--------KGEAMQYDLSTTGGNSGS 171 (268)
T ss_dssp HHHSCCCCBCCCSSCCTTCEEEEEECCTTSSTTCEEEEEEEEE---------EE--------ETTEEEESBCCCTTCTTC
T ss_pred ccccceeecccccccCCCCEEEEEECCCCCCCceEEeecceEE---------ee--------CCCeEEEecccCCCCccC
Confidence 124556788765557899999999999764321 1122222 10 113456666652 25899
Q ss_pred eEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHHHHHHcC
Q 001276 795 VLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKIISG 845 (1109)
Q Consensus 795 pL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l~~~ 845 (1109)
||++.+|+|+||.+..... ..... +.+. ..++.+|++..+.
T Consensus 172 PLv~~~g~lvGIvS~G~~~-------~~~~~--~~~~-~~~~~wI~~~i~~ 212 (268)
T 1wcz_A 172 PVFNEKNEVIGIHWGGVPN-------EFNGA--VFIN-ENVRNFLKQNIED 212 (268)
T ss_dssp EEECTTSCEEEEEEEEETT-------TEEEE--EECC-HHHHHHHHHHCTT
T ss_pred eEEccCCEEEEEEeCCccC-------Cccee--EEcC-HHHHHHHHHHHHh
Confidence 9999999999998763221 11233 3354 5567777665543
No 81
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=99.00 E-value=1.1e-09 Score=104.00 Aligned_cols=101 Identities=13% Similarity=0.228 Sum_probs=80.6
Q ss_pred cccCCCceeeeeeEEEEcChHhHHHcCCCHHHHHHHHhcCCCccceEEEEeecCCCHHhhh-ccCCCEEEEECCEEcCCh
Q 001276 856 VKRPMPLVRILEVELYPTLLSKARSFGLSDDWVQALVKKDPVRRQVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCF 934 (1109)
Q Consensus 856 v~r~~p~~~~Lgv~~~~i~~~~a~~~Gl~~~wi~~~~~~~~~~~~~~~V~~V~~~spA~~a-L~~GDiIlsVnG~~V~~~ 934 (1109)
+.|+ |||+.+..++...++.++++.. ..+....+++|..|.++|||+++ |++||+|++|||+++.++
T Consensus 3 v~~~-----~lGi~~~~l~~~~~~~~~~~~~-------~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~ 70 (112)
T 2p3w_A 3 HMKR-----FIGIRMRTITPSLVDELKASNP-------DFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS 70 (112)
T ss_dssp CCEE-----ECCEEEEECCHHHHHHHHHHCT-------TC--CCSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH
T ss_pred cccc-----eeeEEEecCCHHHHHHhcccCc-------CcccCCCCeEEEEECCCChHHHCCCCCCCEEEEECCEECCCH
Confidence 4566 8999999988777766654211 11223467889999999999999 999999999999999999
Q ss_pred hHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeeeecC
Q 001276 935 HDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDVRD 975 (1109)
Q Consensus 935 ~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l~v~l~~~~ 975 (1109)
.++...+. .+ +.+.++|.|+|+.+++.+++...+
T Consensus 71 ~~~~~~l~---~g----~~v~l~v~R~g~~~~~~v~~~~~~ 104 (112)
T 2p3w_A 71 SELQEAVL---TE----SPLLLEVRRGNDDLLFSIAPEVVM 104 (112)
T ss_dssp HHHHHHHH---HC----SSEEEEEEETTEEEEEEECCEEEC
T ss_pred HHHHHHHh---CC----CeEEEEEEECCEEEEEEEEEeeeC
Confidence 99988872 33 679999999999999998876554
No 82
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Probab=98.95 E-value=9e-09 Score=108.26 Aligned_cols=164 Identities=9% Similarity=0.090 Sum_probs=98.8
Q ss_pred eeEEEEEEEeeCCceEEEEeCceecCCC--CcEEEEe----ecCCeEEe-EEEEEeeCCCcEEEEEECCCCC-----Ccc
Q 001276 650 FFGTGVIIYHSQSMGLVVVDKNTVAISA--SDVMLSF----AAFPIEIP-GEVVFLHPVHNFALIAYDPSSL-----GVA 717 (1109)
Q Consensus 650 ~~GsG~VId~~~~~G~IlTn~~~V~~~~--~di~V~~----~d~~~~~~-a~vv~~dp~~dlAilk~d~~~l-----~~~ 717 (1109)
..|+|++|+ +.+|||++|++.... ..+.+.+ .+ +..+. ++++..++.+||||||++.... +..
T Consensus 22 ~~c~G~lI~----~~~VLTaaHcv~~~~~~~~v~v~~~~~~~~-~~~~~~~~i~~~~~~~DiAll~l~~~~~~~~~~~~~ 96 (204)
T 2vid_A 22 KSATGFVVG----KNTILTNKHVSKNYKVGDRITAHPNSDKGN-GGIYSIKKIINYPGKEDVSVIQVEERAIERGPKGFN 96 (204)
T ss_dssp SSCEEEEEE----TTEEEECHHHHTTCCTTCEEEESCCSSSCC-SCEEEEEEEEECSSSSCCEEEEECSEEEEEETTEEE
T ss_pred eeEEEEEEE----CCEEEEChhHCCCccCCceEEEEeccccCC-CcEEEeeEEecCCCCCeEEEEEEcCccccccccccc
Confidence 369999999 569999977664332 1444432 23 45565 6777888899999999975321 000
Q ss_pred cccceeceecCCCccCCCCCeEEEEeeCCCCcce----eeeeeEeccccccccCCCCCCcccccceeEEEEecccC-CCC
Q 001276 718 GASVVRAAELLPEPALRRGDSVYLVGLSRSLQAT----SRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFG-STF 792 (1109)
Q Consensus 718 ~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~----~~~~~vt~i~~~~~i~~~~~~~y~~~~~~~I~~d~~ig-~~s 792 (1109)
....+.++.|.+ .+..|+.++++|+|.+.... ...+.++ .. +...+..++... ..|
T Consensus 97 ~~~~v~pi~l~~--~~~~g~~~~~~G~g~~~~~~~~~~~~~g~v~---------~~--------~~~~~~~~~~~~~GdS 157 (204)
T 2vid_A 97 FNDNVTPFKYAA--GAKAGERIKVIGYPHPYKNKYVLYESTGPVM---------SV--------EGSSIVYSAHTESGNS 157 (204)
T ss_dssp HHHHCCCCCBCS--CCCTTCEEEEEECCCCCC--CCCEEEEEEEE---------EE--------ETTEEEECCCCCGGGT
T ss_pred ccccccccccCC--cCCCCCEEEEEeCCCCCCCCcceEeeccEEe---------ec--------cCCeEEEecccCCCCc
Confidence 012345567754 37899999999999865421 1122222 10 113456666652 258
Q ss_pred CceEEcCCeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHHHHHH
Q 001276 793 SGVLTDEHGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKII 843 (1109)
Q Consensus 793 GGpL~d~~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l~ 843 (1109)
||||++.+|+|+||.+..... ......+|. .++...++++|++..
T Consensus 158 GGPl~~~~g~lvGI~s~g~~~-----~~~~~~~~~-~~~~~~~~~wI~~~~ 202 (204)
T 2vid_A 158 GSPVLNSNNELVGIHFASDVK-----NDDNRNAYG-VYFTPEIKKFIAENI 202 (204)
T ss_dssp TCEEECTTSCEEEEEEEECC--------CCCCEEE-ECCCHHHHHHHHHHS
T ss_pred cCcEECCCCeEEEEEecCccC-----CCcccccce-eEeCHHHHHHHHhhc
Confidence 999999999999998764321 011223431 123366777777654
No 83
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}
Probab=98.95 E-value=3.5e-09 Score=109.99 Aligned_cols=152 Identities=12% Similarity=0.100 Sum_probs=98.6
Q ss_pred eEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEee-CCCcEEEEEECCCCCCccccccee-----c
Q 001276 651 FGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH-PVHNFALIAYDPSSLGVAGASVVR-----A 724 (1109)
Q Consensus 651 ~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~d-p~~dlAilk~d~~~l~~~~~~~v~-----~ 724 (1109)
-.+||+++ . |||||.| +...... |++.+ |++++.| |..|+||||++...... ..|. +
T Consensus 17 CT~Gf~~~---~--~ilTa~H-c~~~~~~--v~~~d------g~v~~~~~~~~DiAlikl~~~~~~~---~~v~~~~g~~ 79 (189)
T 2ea3_A 17 CSIGFAVN---G--GFITAGH-CGRTGAT--TANPT------GTFAGSSFPGNDYAFVRTGAGVNLL---AQVNNYSGGR 79 (189)
T ss_dssp EECCEEET---T--EEEECGG-GCCTTCE--EETTT------EEEEEEECSBSCEEEEEECTTCEEE---EEEECSSSCE
T ss_pred CccCEEcc---C--eEEEchh-cCCCCCE--EEeCC------cEEEeeCCCCCCEEEEEECCCCccc---cceEecCCce
Confidence 35799998 2 9999955 5555554 44442 8899999 99999999998653221 1232 3
Q ss_pred eecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCcccc-cceeEEEEecccCC-CCCceEEcCCee
Q 001276 725 AELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRA-MNMEVIELDTDFGS-TFSGVLTDEHGR 802 (1109)
Q Consensus 725 ~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~-~~~~~I~~d~~ig~-~sGGpL~d~~G~ 802 (1109)
+++..+..++.|+.|..+|++.++. .+.|+.+.... .|.. ....+++.+..+++ .|||||++ +|+
T Consensus 80 v~l~~s~~~~vG~~v~~~G~~tG~t----~G~Vs~~~~~v--------~~~~~~~~~~~~~~~~~~~GDSGgpl~~-~~~ 146 (189)
T 2ea3_A 80 VQVAGHTAAPVGSAVCRSGSTTGWH----CGTITALNSSV--------TYPEGTVRGLIRTTVCAEPGDSGGSLLA-GNQ 146 (189)
T ss_dssp EECCBCCCCCTTCEEEEEETTTEEE----EEEEEEEEEEE--------EETTEEEEEEEEESCCCCTTCTTCEEEE-TTE
T ss_pred eecCCCcCCCCCCEEEEEEeCCccE----EEEEEecceEE--------EeCCccCcceEEeeeeccCCCccCeEEE-CCE
Confidence 4566656689999999999997742 44554221110 1110 11246788877744 69999996 799
Q ss_pred EEEEEeeccccccccCCCCCCceeEecccHHHHHHHH
Q 001276 803 VQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVL 839 (1109)
Q Consensus 803 VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l 839 (1109)
++||++..... ....... |++|++.++..+
T Consensus 147 ~vGi~s~~~~~-----c~~~~~~--~~~pi~~~l~~~ 176 (189)
T 2ea3_A 147 AQGVTSGGSGN-----CRTGGTT--FFQPVNPILQAY 176 (189)
T ss_dssp EEEEEEEEEEE-----TTTEEEE--EEEEHHHHHHHH
T ss_pred EEEEEeecCCC-----CCCCCcE--EEEEHHHHHHHC
Confidence 99998764321 1122344 669988877654
No 84
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.94 E-value=3.7e-09 Score=98.08 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=65.4
Q ss_pred CCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhHHHHHHhc-CCCCeEEEEEEECCEEEEEEEEeecCC
Q 001276 296 ETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDD-GVDKNIELLIERGGISMTVNLVVQDLH 368 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l~~~l~~-~~g~~v~l~v~R~g~~~~~~v~l~~~~ 368 (1109)
..|++| ..|.++|||++||++||+|++|||++|.+|.++...+.. ..|+.+.|+|.|+|+..++++++..++
T Consensus 6 ~~Gv~V-~~V~~~spA~~GL~~GD~I~~Ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~ 78 (100)
T 3i18_A 6 YDGVYV-MSVKDDVPAADVLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKHGDKNEQADIKLTAID 78 (100)
T ss_dssp CCCEEE-EEECTTSGGGGTCCTTCEEEEETTBCCSSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEECS
T ss_pred CCCEEE-EEeCCCCchHHCCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEecCC
Confidence 478877 699999999989999999999999999999999998865 578999999999999999999987765
No 85
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.94 E-value=2.1e-09 Score=98.72 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=67.6
Q ss_pred EEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhcC-CCCeEEEEEEECC--EEEEEEEEeecCCC-CCCCccc
Q 001276 302 VDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDDG-VDKNIELLIERGG--ISMTVNLVVQDLHS-ITPDYFL 376 (1109)
Q Consensus 302 v~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~~-~g~~v~l~v~R~g--~~~~~~v~l~~~~~-~~~~~~~ 376 (1109)
|..|.++|||++ ||++||+|++|||++|.+|.++...+... .++.+.++|.|+| ...++++++..|+. .....++
T Consensus 6 V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~l~~~~~~~~~~~~l 85 (95)
T 3id1_A 6 VGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHWAFEPDKEDPV 85 (95)
T ss_dssp EEEECTTSHHHHTTCCTTCEEEEETTEECSSHHHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEEECTTCCCCTTTSCHH
T ss_pred EEeeCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHHhcCCCcEEEEEEECCCCceEEEEEEccccccCCCCCCHH
Confidence 479999999999 99999999999999999999999988654 4478999999987 56888999998863 3344566
Q ss_pred cccceE
Q 001276 377 EVSGAV 382 (1109)
Q Consensus 377 ~~~G~~ 382 (1109)
..+|+.
T Consensus 86 ~~lGl~ 91 (95)
T 3id1_A 86 SSLGIR 91 (95)
T ss_dssp HHTTEE
T ss_pred HHcCcc
Confidence 667754
No 86
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.93 E-value=2.3e-09 Score=98.30 Aligned_cols=73 Identities=23% Similarity=0.378 Sum_probs=65.4
Q ss_pred CCCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhHHHHHHhc-CCCCeEEEEEEECCEEEEEEEEeecCC
Q 001276 295 GETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDD-GVDKNIELLIERGGISMTVNLVVQDLH 368 (1109)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l~~~l~~-~~g~~v~l~v~R~g~~~~~~v~l~~~~ 368 (1109)
...|++| ..|.++|||++||++||+|++|||+++.++.++..++.. .+|+.+.|+|.|+|+.+++++++...+
T Consensus 3 ~~~Gv~V-~~V~~~spA~~GL~~GD~Il~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~ 76 (94)
T 2kl1_A 3 EAKGVYV-MSVLPNMPAAGRLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIRDRKQHEAELVLKPFP 76 (94)
T ss_dssp CCCCEEC-CCCCTTSTTBTTBCTTCEEEEETTBCCCCHHHHHHHHHHSCTTCCEEEEEEETTEEEEEEECCCBCS
T ss_pred CCCcEEE-EEECCCChHHhCCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEeeCC
Confidence 4578776 699999999999999999999999999999999988865 489999999999999999999887665
No 87
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.93 E-value=5.7e-10 Score=101.61 Aligned_cols=70 Identities=26% Similarity=0.384 Sum_probs=63.2
Q ss_pred ceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhHHHHHHhcC-CCCeEEEEEEECCEEEEEEEEeecCC
Q 001276 298 GLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLLDDG-VDKNIELLIERGGISMTVNLVVQDLH 368 (1109)
Q Consensus 298 G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l~~~l~~~-~g~~v~l~v~R~g~~~~~~v~l~~~~ 368 (1109)
|++| ..|.++|||++||++||+|++|||+++.++.++..++... +|+.++|+|.|+|+.+++++++...+
T Consensus 2 Gv~V-~~V~~~spA~~GL~~GD~I~~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~ 72 (91)
T 2kjp_A 2 GIYA-SSVVENMPAKGKIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFP 72 (91)
T ss_dssp CSSC-CCCCCSSCCSSCCCSSCEEEEETTBCCSSHHHHHHHHSSCCSSCEECEEEESSSCEECCCEECCCCT
T ss_pred ceEE-EEECCCChHHHcCCCCCEEEEECCEECCCHHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEeccC
Confidence 5555 6899999999999999999999999999999999988664 79999999999999999999887765
No 88
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}
Probab=98.92 E-value=3.6e-09 Score=109.53 Aligned_cols=156 Identities=10% Similarity=0.053 Sum_probs=99.0
Q ss_pred EEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEee-CCCcEEEEEECCCCCCccccccee-----ce
Q 001276 652 GTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH-PVHNFALIAYDPSSLGVAGASVVR-----AA 725 (1109)
Q Consensus 652 GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~d-p~~dlAilk~d~~~l~~~~~~~v~-----~~ 725 (1109)
-+||++.. ...+||||| +|+......+.+ ..|++++.| |..|+||||+++..... ..|. ++
T Consensus 17 T~Gf~v~~-~~~~~ilTa-~Hc~~~g~~v~~--------~~g~v~~~~~~~~D~Alikl~~~~~~~---~~v~~~~g~~~ 83 (186)
T 2pfe_A 17 SIGFSVRQ-GSQTGFATA-GHCGSTGTRVSS--------PSGTVAGSYFPGRDMGWVRITSADTVT---PLVNRYNGGTV 83 (186)
T ss_dssp ECCEEEEE-TTEEEEEEC-GGGCCTTCEEBT--------TTEEEEEEECSBSCEEEEEECTTSEEE---EEEECSSSCEE
T ss_pred EeeEEEEc-CCeeEEEEC-hhhCCCCCEEEE--------eeEEEEecCCCCCCEEEEEeCCCcccc---cceeccCCceE
Confidence 47999973 236899999 555555554443 567899998 99999999998753211 1222 33
Q ss_pred ecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCcccccceeEEEEecccCC-CCCceEEcCCeeEE
Q 001276 726 ELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFGS-TFSGVLTDEHGRVQ 804 (1109)
Q Consensus 726 ~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~~~~~~I~~d~~ig~-~sGGpL~d~~G~Vv 804 (1109)
++..+..+++|++|..+|++.+.. .+.|+.+......+. ..| ..+++.+...++ .|||||+. +|+++
T Consensus 84 ~i~~~~~~~vG~~vc~~G~~tG~t----~G~vs~~~~tv~~~~---~~~----~~~~~~~~c~~~GDSGgpl~~-~~~~v 151 (186)
T 2pfe_A 84 TVTGSQEAATGSSVCRSGATTGWR----CGTIQSKNQTVRYAE---GTV----TGLTRTTACAEGGDSGGPWLT-GSQAQ 151 (186)
T ss_dssp ECCBCCCCCTTCEEEEEETTTEEE----EEEEEEEEEEEEETT---EEE----EEEEEESCCCCTTCTTCEEEE-TTEEE
T ss_pred ecCCCCCCCCCCeEEEEEeCCceE----EEEEEEEeeeEEeCC---ceE----eceEeccEEecCCCccCeEEE-CCEEE
Confidence 455556689999999999997742 345552221110010 011 246777766643 69999995 88999
Q ss_pred EEEeeccccccccCCCCCCceeEecccHHHHHHHH
Q 001276 805 AIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVL 839 (1109)
Q Consensus 805 Gi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l 839 (1109)
||++..... ....+.. |++|++.++..+
T Consensus 152 Gi~s~g~~~-----c~~~~~~--~~~pi~~~l~~~ 179 (186)
T 2pfe_A 152 GVTSGGTGD-----CRSGGIT--FFQPINPLLSYF 179 (186)
T ss_dssp EEEEEEEEE-----TTTEEEE--EEEEHHHHHHHH
T ss_pred EEEeecCCC-----CCCCCcE--EEEEHHHHHHHC
Confidence 998864321 1122344 569988877644
No 89
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.90 E-value=6.7e-09 Score=96.34 Aligned_cols=69 Identities=23% Similarity=0.309 Sum_probs=63.6
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEeeC
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQD 1078 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk~~ 1078 (1109)
.|++|..+.++|||++ ||++||.|++|||+++.++++|.+.+.....++.++|+ +.|+|+.+.+++++.
T Consensus 7 ~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~~dl~~~l~~~~~g~~v~l~-v~R~g~~~~~~v~~~ 75 (100)
T 3i18_A 7 DGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKIN-YKHGDKNEQADIKLT 75 (100)
T ss_dssp CCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSHHHHHHHHHTSCTTCEEEEE-EEETTEEEEEEEECE
T ss_pred CCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEE-EEECCEEEEEEEEEe
Confidence 4899999999999996 99999999999999999999999999987678999999 789999988887764
No 90
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.89 E-value=3.6e-09 Score=95.50 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=61.5
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLK 1076 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk 1076 (1109)
|++|..+.++|||+++||++||.|++|||+++.++++|.++++..+.++.++|+ +.|+|+.+.++++
T Consensus 20 G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~-v~R~g~~~~~~v~ 86 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLT-VERDGQQHDVYIQ 86 (87)
T ss_dssp EEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEE-EEETTEEEEEEEE
T ss_pred EEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEE-EEECCEEEEEEEE
Confidence 778899999999999999999999999999999999999999987678999999 7999998887765
No 91
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.88 E-value=3.3e-09 Score=97.41 Aligned_cols=86 Identities=13% Similarity=0.075 Sum_probs=68.7
Q ss_pred EEEeecCCCHHhhh-ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCC--EEEEEEEeeeecC-CCC
Q 001276 903 RVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQG--REIELQVGTDVRD-GNG 978 (1109)
Q Consensus 903 ~V~~V~~~spA~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g--~~~~l~v~l~~~~-~~~ 978 (1109)
+|..|.++|||+++ |++||+|++|||++|.+|.++...+.....+ +.+.++|.|+| ..+++++++..+. +..
T Consensus 5 ~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~d~~~~l~~~~~~----~~v~l~v~R~g~~~~~~~~l~l~~~~~~~~ 80 (95)
T 3id1_A 5 VVGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGD----ESTTITVAPFGSDQRRDVKLDLRHWAFEPD 80 (95)
T ss_dssp BEEEECTTSHHHHTTCCTTCEEEEETTEECSSHHHHHHHHHHTTTC----SEEEEEEECTTCCCCEEEEEECTTCCCCTT
T ss_pred EEEeeCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHHhcCC----CcEEEEEEECCCCceEEEEEEccccccCCC
Confidence 48899999999999 9999999999999999999999988654443 68999999987 5688888888774 334
Q ss_pred cceEEeecCccccC
Q 001276 979 TTRVINWCGCIVQD 992 (1109)
Q Consensus 979 t~~~~~~~G~~~~~ 992 (1109)
...++..+|+.+..
T Consensus 81 ~~~~l~~lGl~p~~ 94 (95)
T 3id1_A 81 KEDPVSSLGIRPRG 94 (95)
T ss_dssp TSCHHHHTTEEECC
T ss_pred CCCHHHHcCccCCC
Confidence 44555556665443
No 92
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...
Probab=98.87 E-value=1.8e-08 Score=104.41 Aligned_cols=167 Identities=13% Similarity=0.067 Sum_probs=101.3
Q ss_pred eeEE-EEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEee-CCCcEEEEEECCCCCCcccccceeceec
Q 001276 650 FFGT-GVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLH-PVHNFALIAYDPSSLGVAGASVVRAAEL 727 (1109)
Q Consensus 650 ~~Gs-G~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~d-p~~dlAilk~d~~~l~~~~~~~v~~~~l 727 (1109)
..|| ||++.. +..++|||++| +..+...+.+...+ .. ..++++..+ +.+|+||||++...+.. ...++++.+
T Consensus 12 ~~ct~Gf~v~~-~~~~~ilTaaH-cv~~~~~~~v~~~~-~~-~~g~~~~~~~~~~DiAll~l~~~~~~~--~~~v~~~~l 85 (185)
T 2qa9_E 12 GRCSLGFNVRS-GSTYYFLTAGH-CTDGATTWWANSAR-TT-VLGTTSGSSFPNNDYGIVRYTNTTIPK--DGTVGGQDI 85 (185)
T ss_dssp CEEECCEEEEE-TTEEEEEECHH-HHTTCSEEESSTTS-CS-EEEEEEEEECSBSCEEEEEECCSSSCC--CCEETTEEC
T ss_pred CcEeccEEEEE-CCceEEEECcc-cCCCCCcEEecCCC-ce-EeEEEeccccCCCCEEEEEecCCCccc--cCccceeee
Confidence 3565 999974 45789999954 55666666665443 33 346777778 99999999997633321 123445566
Q ss_pred CCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCcccccceeEEEEecccCC-CCCceEEcCCeeEEEE
Q 001276 728 LPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFGS-TFSGVLTDEHGRVQAI 806 (1109)
Q Consensus 728 ~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~~~~~~I~~d~~ig~-~sGGpL~d~~G~VvGi 806 (1109)
.....+..|+.++++|++.+. ..+.++.+... +.......| ...++.+..... .|||||++.+ +++||
T Consensus 86 ~~~~~~~~g~~v~~~Gw~~~~----~~g~l~~~~~~--v~~~~~~~~----~~~~~~~~cac~GDSGGPlv~~~-~~vGI 154 (185)
T 2qa9_E 86 TSAANATVGMAVTRRGSTTGT----HSGSVTALNAT--VNYGGGDVV----YGMIRTNVCAEPGDSGGPLYSGT-RAIGL 154 (185)
T ss_dssp CEECCCCTTCEEEEEETTTEE----EEEEEEEEEEE--EECSTTCEE----EEEEEESCCCCTTCTTCEEEETT-EEEEE
T ss_pred CCcccCCCCCEEEEecCCCce----eEeEEEEEEEE--EEcCCCCEE----eceEEecccCCCCCccceEEECC-EEEEE
Confidence 543447899999999997542 23444422111 111111111 135565554422 5999999975 99999
Q ss_pred EeeccccccccCCCCCCceeEecccHHHHHHHHH
Q 001276 807 WGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLD 840 (1109)
Q Consensus 807 ~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~ 840 (1109)
++...+. ......+ +..|++.++.+++
T Consensus 155 ~s~g~~~-----~~~~~p~--vyt~v~~~~~wI~ 181 (185)
T 2qa9_E 155 TSGGSGN-----CSSGGTT--FFQPVTEALSAYG 181 (185)
T ss_dssp EEEEEEE-----TTTEEEE--EEEEHHHHHHHHT
T ss_pred EEecCCC-----CCCCCcE--EEEEHHHHHHhhC
Confidence 8764321 1112233 4588888877663
No 93
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.86 E-value=6.3e-09 Score=97.44 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcCCcccccccccccCCCccceEEEEcChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCccc
Q 001276 233 ERVVRALRFLQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAH 312 (1109)
Q Consensus 233 ~~i~~~l~~l~~~~~~~~~~~~~~~v~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~ 312 (1109)
+.+.++.+++.++. ...++++|+...... | ...|+.| ..+.|+|||+
T Consensus 5 ~~~~~~~~~l~~~~----------~~~~~~~g~~~~~~~-------~---------------~~~G~~V-~~~~pas~A~ 51 (105)
T 2i4s_A 5 DKVDAIREAIARNP----------QEIFQYVRLSQVKRD-------D---------------KVLGYRV-SPGKDPVLFE 51 (105)
T ss_dssp HHHHHHHHHHHHSG----------GGHHHHEEEEEEEET-------T---------------EEEEEEE-EECSCTHHHH
T ss_pred HHHHHHHHHHHHCH----------HHHHhhceeEEEecC-------C---------------cEEEEEE-ecCCCCCHHH
Confidence 56677788777776 566778887754210 0 1245555 5677777889
Q ss_pred c-CCCCCCEEEEECCEEeCChhHHHHHHhc-CCCCeEEEEEEECCEEEEEEEEe
Q 001276 313 L-RLEPGDVLVRVNGEVITQFLKLETLLDD-GVDKNIELLIERGGISMTVNLVV 364 (1109)
Q Consensus 313 ~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~-~~g~~v~l~v~R~g~~~~~~v~l 364 (1109)
+ ||++||+|++|||++|.+|.++..++.. ..|+.+.|+|.|+|+..++++++
T Consensus 52 ~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~l 105 (105)
T 2i4s_A 52 SIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQF 105 (105)
T ss_dssp HHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEEETTEEEEEEEEC
T ss_pred HcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEEEECCEEEEEEEeC
Confidence 9 9999999999999999999999988754 67899999999999988777653
No 94
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=98.85 E-value=6.6e-09 Score=102.44 Aligned_cols=97 Identities=22% Similarity=0.289 Sum_probs=69.3
Q ss_pred ccCCCccceEEEE-cChhH-HHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--C
Q 001276 257 SIPRGTLQVTFVH-KGFDE-TRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--Q 331 (1109)
Q Consensus 257 ~v~rg~lg~~~~~-~~~~~-~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~ 331 (1109)
.+.|+++|+.+.. ...+. .+.+++. +...|++| ..|.++|||++ ||++||+|++|||+++. +
T Consensus 34 ~~~~~~lG~~i~~g~~~~~~~~~~~~~------------~~~~gv~V-~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~ 100 (139)
T 2vz5_A 34 QGENLILGFSIGGGIDQDPSQNPFSED------------KTDKGIYV-TRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVT 100 (139)
T ss_dssp ETTEEECSEEEEECTTSCGGGCSSCSS------------TTCCCEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCC
T ss_pred CCCcccccEEEEccccCChhhhhhccc------------CCCCCEEE-EEECCCCHHHHCCCCCCCEEEEECCEEcCCCC
Confidence 4677899999874 22111 1123321 13578777 69999999999 99999999999999999 5
Q ss_pred hhHHHHHHhcCCCCeEEEEEEECCEEEEEEEEeec
Q 001276 332 FLKLETLLDDGVDKNIELLIERGGISMTVNLVVQD 366 (1109)
Q Consensus 332 ~~~l~~~l~~~~g~~v~l~v~R~g~~~~~~v~l~~ 366 (1109)
+.++..++....|+.+.|+|.|+|+...+.+.+..
T Consensus 101 ~~~~~~~l~~~~g~~v~l~v~R~g~~~~v~~~~~~ 135 (139)
T 2vz5_A 101 HDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLS 135 (139)
T ss_dssp HHHHHHHHCCTTCSEEEEEEEECC-------CCCC
T ss_pred HHHHHHHHHhCCCCEEEEEEEECCEEEEEEEeece
Confidence 88888888767889999999999998877766544
No 95
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.82 E-value=1.4e-09 Score=99.11 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=63.4
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEeeCC
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQDL 1079 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk~~~ 1079 (1109)
|++|..|.++|||++ ||++||.|++|||+++.++++|.++++..+.++.++|+ +.|+|+.+.+++++..
T Consensus 2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~~~~l~~~l~~~~~g~~v~l~-v~R~g~~~~~~v~~~~ 70 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-KIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLK-IEREEKEKRVTLTLKQ 70 (91)
T ss_dssp CSSCCCCCCSSCCSS-CCCSSCEEEEETTBCCSSHHHHHHHHSSCCSSCEECEE-EESSSCEECCCEECCC
T ss_pred ceEEEEECCCChHHH-cCCCCCEEEEECCEECCCHHHHHHHHHcCCCCCEEEEE-EEECCEEEEEEEEEec
Confidence 678999999999999 99999999999999999999999999987679999999 7899999888887753
No 96
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.81 E-value=7.8e-09 Score=94.72 Aligned_cols=69 Identities=28% Similarity=0.295 Sum_probs=64.2
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEeeC
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQD 1078 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk~~ 1078 (1109)
.|++|..|.++|||++ ||++||.|++|||+++.++++|.++++..+.++.++|+ +.|+|+.+.+++++.
T Consensus 5 ~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~~~l~~~l~~~~~g~~v~l~-v~R~g~~~~~~v~~~ 73 (94)
T 2kl1_A 5 KGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVT-FIRDRKQHEAELVLK 73 (94)
T ss_dssp CCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCCHHHHHHHHHHSCTTCCEEEE-EEETTEEEEEEECCC
T ss_pred CcEEEEEECCCChHHh-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEE-EEECCEEEEEEEEEe
Confidence 4899999999999999 99999999999999999999999999987679999999 799999988888774
No 97
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.78 E-value=1.8e-08 Score=90.86 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=59.6
Q ss_pred ceEEEEeecCCCHHhhh-ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEee
Q 001276 900 QVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGT 971 (1109)
Q Consensus 900 ~~~~V~~V~~~spA~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l~v~l 971 (1109)
.++.|..+.++|||+++ |++||+|++|||++|.+|.++..++...+.+ +.+.++|.|+|+.+++.+++
T Consensus 19 ~G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~~d~~~~~~~~~~g----~~v~l~v~R~g~~~~~~v~l 87 (87)
T 2i6v_A 19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEM----TEMSLTVERDGQQHDVYIQF 87 (87)
T ss_dssp EEEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGC----SEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCC----CEEEEEEEECCEEEEEEEEC
Confidence 56778888888999999 9999999999999999999999888666555 78999999999988887753
No 98
>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3
Probab=98.78 E-value=1.5e-08 Score=101.16 Aligned_cols=115 Identities=10% Similarity=0.021 Sum_probs=82.8
Q ss_pred cceeeEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEeeCCCcEEEEEE---CCC-CCCcccccce
Q 001276 647 SQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLHPVHNFALIAY---DPS-SLGVAGASVV 722 (1109)
Q Consensus 647 ~~~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~dp~~dlAilk~---d~~-~l~~~~~~~v 722 (1109)
.....|+||+|+ ..|+|||+ +||+.+.....|++ + +.+++ +.+++..|||++++ +.. .+|.
T Consensus 12 ~~~G~GsgF~i~---~~g~vVTA-~HVv~~~~~~~V~~-~-G~~~~---Vgf~~~~DlA~l~v~~~~~~g~~P~------ 76 (198)
T 1mbm_A 12 SSYGTGSVWTRN---NEVVVLTA-SHVVGRANMATLKI-G-DAMLT---LTFKKNGDFAEAVTTQSELPGNWPQ------ 76 (198)
T ss_dssp SSEEEEEEEEET---TEEEEEEE-HHHHCTTCEEEEEE-T-TEEEE---EECEEETTEEEEEECTTTSCSCCCB------
T ss_pred ccCCccceEEEC---CCeEEEEe-eeEEccCceEEEEE-C-CEEEE---eecccCCcEEEEEeeccCCCCCCcc------
Confidence 344789999999 89999999 77787788888999 6 99998 77889999999999 433 3343
Q ss_pred eceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCcccccceeEEEEecccCCCCCceEEcCCee
Q 001276 723 RAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFGSTFSGVLTDEHGR 802 (1109)
Q Consensus 723 ~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~~~~~~I~~d~~ig~~sGGpL~d~~G~ 802 (1109)
++|++ +++|+.-+. .+.+.++ ... .+ ..+++++ .-| +||||++|.+ +
T Consensus 77 --l~las---p~vG~a~~~----------~~tG~~~----~l~-----g~------~g~l~~t-~PG-DSGsPVl~~~-~ 123 (198)
T 1mbm_A 77 --LHFAQ---PTTGPASWC----------TATGDEE----GLL-----SG------EVCLAWT-TSG-DSGSAVVQGD-A 123 (198)
T ss_dssp --CCBCC---CCSEEEEEE----------ETTEEEE----EEE-----CS------SCEECCC-CGG-GTTCEEEETT-E
T ss_pred --cccCC---CcccceEEe----------eccccEE----EEe-----cC------CceeEcC-CCC-CCCCccccCC-e
Confidence 67744 488882222 2233443 221 11 1456666 223 5899999999 9
Q ss_pred EEEEEee
Q 001276 803 VQAIWGS 809 (1109)
Q Consensus 803 VvGi~~~ 809 (1109)
||||+++
T Consensus 124 vIGV~T~ 130 (198)
T 1mbm_A 124 VVGVHTG 130 (198)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9999988
No 99
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.77 E-value=1.5e-08 Score=94.78 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=61.0
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLK 1076 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk 1076 (1109)
|++|....++|||+++||++||.|++|||+++.++++|.++++...+++.++|+ +.|+|+.+.++++
T Consensus 38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~-v~R~g~~~~~~v~ 104 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLT-VERDGQQHDVYIQ 104 (105)
T ss_dssp EEEEEECSCTHHHHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEE-EEETTEEEEEEEE
T ss_pred EEEEecCCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEE-EEECCEEEEEEEe
Confidence 677888888889999999999999999999999999999999987678999999 7999998888775
No 100
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.75 E-value=6.4e-09 Score=101.10 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=73.0
Q ss_pred CCCCeEEEEEEECCEEEEEEEEeecCCCCCCCccccccceEEecCCHHHhhccCCCCCeEEEE--cCCChhHHcCCCCCC
Q 001276 342 GVDKNIELLIERGGISMTVNLVVQDLHSITPDYFLEVSGAVIHPLSYQQARNFRFPCGLVYVA--EPGYMLFRAGVPRHA 419 (1109)
Q Consensus 342 ~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~~G~~~~~l~~~~~~~~~~~~~gv~v~--~pg~~a~~aGl~~GD 419 (1109)
.+|+.+.++|.|+|+.+++++++... ...|+.+... ..+. .|++|. .+++||++|||++||
T Consensus 6 ~~g~~v~l~v~R~g~~~~v~v~~~~~---------~~lG~~~~~~-----~~~~---~gv~V~~V~~~spA~~aGL~~GD 68 (128)
T 1uf1_A 6 SGDRRSTLHLLQGGDEKKVNLVLGDG---------RSLGLTIRGG-----AEYG---LGIYITGVDPGSEAEGSGLKVGD 68 (128)
T ss_dssp STTTSCCSCCCCCSSEEEEEEECCSS---------CCCCEEEECC-----TTTT---CCCEEEEECTTCHHHHHTCCTTC
T ss_pred CCCCEEEEEEEeCCcEEEEEEEECCC---------CccCEEEECc-----ccCC---CCEEEEEECCCCHHHHCCCCCCC
Confidence 57888999999999999988887532 2347766652 1122 478887 489999999999999
Q ss_pred EEEEcCCeecCCHHHHHHHHHhcCCCCeEeEEEEeec
Q 001276 420 IIKKFAGEEISRLEDLISVLSKLSRGARVPIEYSSYT 456 (1109)
Q Consensus 420 ~I~~Vng~~v~~l~~~~~~i~~~~~g~~v~l~~~~~~ 456 (1109)
+|++|||+++.++.+ .++++.++.++.+.|++.|..
T Consensus 69 ~I~~vng~~v~~~~~-~~~~~~~~~~~~v~l~v~R~g 104 (128)
T 1uf1_A 69 QILEVNGRSFLNILH-DEAVRLLKSSRHLILTVKDVG 104 (128)
T ss_dssp EEEEETTEECSSCCH-HHHHHHHTTCSEEEEEEECCS
T ss_pred EEEEECCEECCCCCH-HHHHHHHhcCCeEEEEEEECC
Confidence 999999999999755 566666555667776666544
No 101
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.71 E-value=1.7e-08 Score=91.68 Aligned_cols=65 Identities=29% Similarity=0.548 Sum_probs=58.8
Q ss_pred EEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhcCCCCeEEEEEEECCEEEEEEEEeec
Q 001276 302 VDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIELLIERGGISMTVNLVVQD 366 (1109)
Q Consensus 302 v~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~~~g~~v~l~v~R~g~~~~~~v~l~~ 366 (1109)
|..|.++|||++ ||++||+|++|||+++.+|.++...+....|+.+.+++.|+|+..++++++..
T Consensus 8 V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~~~~ 73 (91)
T 2zpm_A 8 LENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIERQGSPLSLTLIPES 73 (91)
T ss_dssp CSEECTTSHHHHTTCCTTCEEEEETTEECCCHHHHHHHHHHCTTCCEEEEEEETTEEEEEEECCEE
T ss_pred EEEECCCChHHhcCCCCCCEEEEECCeEcCCHHHHHHHHhcCCCCeEEEEEEECCeEEEEEEEEee
Confidence 478999999999 99999999999999999999999988767889999999999998888877654
No 102
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=98.70 E-value=5e-08 Score=96.15 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=56.6
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEee
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQ 1077 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk~ 1077 (1109)
.|++|..|.++|||+++||++||.|++|||+++. +++++.+.++. ..++.++|+ +.|+|....+.++.
T Consensus 64 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~g~~v~l~-v~R~g~~~~v~~~~ 133 (139)
T 2vz5_A 64 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTK-RSEEVVRLL-VTRQSLQKAVQQSM 133 (139)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCC-TTCSEEEEE-EEECC-------CC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCCEEEEE-EEECCEEEEEEEee
Confidence 5899999999999999999999999999999999 58999999998 568999999 89999887776664
No 103
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.69 E-value=3.2e-08 Score=89.89 Aligned_cols=67 Identities=22% Similarity=0.305 Sum_probs=61.2
Q ss_pred EEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEeeC
Q 001276 1010 VYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQD 1078 (1109)
Q Consensus 1010 V~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk~~ 1078 (1109)
++|..+.++|||+++||++||.|++|||+++.++++|...+... .++.+.|+ +.|+|+.+.+++++.
T Consensus 6 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~-~g~~v~l~-v~R~g~~~~~~v~~~ 72 (91)
T 2zpm_A 6 PVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVMLVRDN-PGXSLALE-IERQGSPLSLTLIPE 72 (91)
T ss_dssp CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCHHHHHHHHHHC-TTCCEEEE-EEETTEEEEEEECCE
T ss_pred eEEEEECCCChHHhcCCCCCCEEEEECCeEcCCHHHHHHHHhcC-CCCeEEEE-EEECCeEEEEEEEEe
Confidence 47889999999999999999999999999999999999999985 58889999 789999988888753
No 104
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=98.68 E-value=1.9e-08 Score=91.64 Aligned_cols=64 Identities=19% Similarity=0.438 Sum_probs=48.6
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCEEEEEEE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGISMTVNL 362 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R~g~~~~~~v 362 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++. ++.++..++... ++.+.|+|.|+|+..++++
T Consensus 23 ~gv~V-~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~g~~~~~~v 90 (92)
T 3cyy_A 23 SHIFV-KEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS-KGKLKMVVQRDERATLLNV 90 (92)
T ss_dssp EEEEE-EEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEEC---------
T ss_pred CCEEE-EEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEeCCceeeeeC
Confidence 56666 79999999999 9 9999999999999999 999998887654 4589999999998766554
No 105
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=98.68 E-value=3.8e-08 Score=91.66 Aligned_cols=83 Identities=18% Similarity=0.258 Sum_probs=58.9
Q ss_pred CCCccceEEEEcChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhH
Q 001276 259 PRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLK 334 (1109)
Q Consensus 259 ~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~ 334 (1109)
.++++|+.+........+.++++ ...|++| ..|.++|||++ | |++||+|++|||+++.+ +.+
T Consensus 14 ~~~~lG~~~~~~~~~~~~~~~~~-------------~~~g~~V-~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~ 79 (103)
T 2fcf_A 14 PSKSLGISIVGGRGMGSRLSNGE-------------VMRGIFI-KHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQ 79 (103)
T ss_dssp C-CCCCEEEECCCC--------------------------EEE-EEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCceeEEEEccCCCCcccccCC-------------CCCCEEE-EEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 46789999886443333333332 3467776 79999999999 9 99999999999999998 888
Q ss_pred HHHHHhcCCCCeEEEEEEECCE
Q 001276 335 LETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 335 l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
+..++... ++.+.|+|.|.++
T Consensus 80 ~~~~l~~~-~~~v~l~v~r~~~ 100 (103)
T 2fcf_A 80 AVEAIRKA-GNPVVFMVQSIIS 100 (103)
T ss_dssp HHHHHHTC-CSSEEEEEECCCC
T ss_pred HHHHHHhC-CCcEEEEEEECCC
Confidence 88888665 4489999998654
No 106
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=98.68 E-value=2.5e-08 Score=90.40 Aligned_cols=59 Identities=22% Similarity=0.374 Sum_probs=51.8
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEe--CChhHHHHHHhc-CCCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVI--TQFLKLETLLDD-GVDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v--~~~~~l~~~l~~-~~g~~v~l~v~R~g~ 356 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++ .++.++..++.. ..|+.+.|+|.|+|+
T Consensus 28 ~g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 90 (90)
T 2eaq_A 28 PGIFV-ASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYGK 90 (90)
T ss_dssp TEEEE-EEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC-
T ss_pred CCEEE-EEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence 56666 79999999999 9999999999999999 899999988864 468899999999874
No 107
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=98.66 E-value=2.5e-08 Score=90.44 Aligned_cols=60 Identities=23% Similarity=0.291 Sum_probs=54.3
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeC--CCHHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v--~~l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++||++||.|++|||+++ .++++|.++++..+.++.+.|+ +.|+|+
T Consensus 29 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~g~ 90 (90)
T 2eaq_A 29 GIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMD-VRRYGK 90 (90)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEE-EEEEC-
T ss_pred CEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEE-EEeCCC
Confidence 88999999999999999999999999999999 8999999999875458889998 677763
No 108
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.65 E-value=2.8e-08 Score=87.98 Aligned_cols=77 Identities=17% Similarity=0.340 Sum_probs=59.0
Q ss_pred ceEEEEcChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHH
Q 001276 264 QVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLL 339 (1109)
Q Consensus 264 g~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l 339 (1109)
|+++.....+..+.||++ -..|++| ..|.++|||++ | |++||+|++|||+++. ++.++..++
T Consensus 1 G~~~~~~~~~~~~~~g~~-------------~~~gv~V-~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l 66 (81)
T 2rcz_A 1 GSKVTLVKSRKNEEYGLR-------------LASHIFV-KEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLI 66 (81)
T ss_dssp CEEEEEECCSTTCCCCEE-------------EEEEEEE-EEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred CeEEEEEECCCCCCCCEE-------------EeCCEEE-EEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 345555555566667765 1245555 79999999999 9 9999999999999999 999998888
Q ss_pred hcCCCCeEEEEEEECC
Q 001276 340 DDGVDKNIELLIERGG 355 (1109)
Q Consensus 340 ~~~~g~~v~l~v~R~g 355 (1109)
.... +.+.++|.|+|
T Consensus 67 ~~~~-~~v~l~v~R~g 81 (81)
T 2rcz_A 67 ERSK-GKLKMVVQRDE 81 (81)
T ss_dssp HTST-TEEEEEEEC--
T ss_pred HCCC-CeEEEEEEeCC
Confidence 6543 48999998865
No 109
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=98.64 E-value=1.1e-07 Score=90.06 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=61.8
Q ss_pred CceEEEEEecCCCcccc-CC-CCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEEEEEEEEeecCC
Q 001276 297 TGLLVVDSVVPGGPAHL-RL-EPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGISMTVNLVVQDLH 368 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL-~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~~~~~v~l~~~~ 368 (1109)
.|++| ..|.++|||++ || ++||+|++|||+++.+ +.++..++....|+.+.|++.|+|+..++++.....+
T Consensus 26 ~~~~V-~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~~~~~~~ 100 (112)
T 1qau_A 26 PPVII-SDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTG 100 (112)
T ss_dssp SCEEE-EEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECCTTSEEEEEEEECT
T ss_pred CCEEE-EEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeCCcccceEeeeeccC
Confidence 46666 79999999999 98 9999999999999999 8999988877788999999999998888777765443
No 110
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=98.62 E-value=7.8e-08 Score=87.44 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=51.1
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEe
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLK 1076 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk 1076 (1109)
+++|..+.++|||+++| |++||.|++|||+++. +++++.+.++.. +..+.|+ +.|+|..+.+++.
T Consensus 24 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~-v~r~g~~~~~~v~ 91 (92)
T 3cyy_A 24 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS--KGKLKMV-VQRDERATLLNVP 91 (92)
T ss_dssp EEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTT--TTEEEEE-EEC----------
T ss_pred CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCcEEEE-EEeCCceeeeeCC
Confidence 78999999999999999 9999999999999999 999999999973 4488998 7899988777664
No 111
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=98.61 E-value=1.1e-07 Score=90.02 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=62.4
Q ss_pred cEEEEEecCCChhhhcCC-CCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEeeCC
Q 001276 1009 GVYVARWCHGSPVHRYGL-YALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQDL 1079 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL-~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk~~~ 1079 (1109)
+++|..+.++|||+++|| ++||.|++|||+++.+ ++++.+.++.. .++.+.|. +.|+|+.+.+++++..
T Consensus 27 ~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~g~~v~l~-v~R~g~~~~~~~~~~~ 98 (112)
T 1qau_A 27 PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI-ASETHVVL-ILRGPEGFTTHLETTF 98 (112)
T ss_dssp CEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHS-CSSSEEEE-EEECCTTSEEEEEEEE
T ss_pred CEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCCcEEEE-EEeCCcccceEeeeec
Confidence 789999999999999998 9999999999999999 99999999984 58899999 7899988887777633
No 112
>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0
Probab=98.60 E-value=9.7e-07 Score=92.35 Aligned_cols=164 Identities=13% Similarity=0.163 Sum_probs=113.5
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecCCeEEEEE----EEEEcCCCcEEE
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVY----PIYRDPVHDFGF 121 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~----vv~~d~~~DlAl 121 (1109)
...|+.+.... ......--|+.... ||+||+|........+.+++..|+..-.. -+..-+..|+.+
T Consensus 15 a~~iC~l~n~s-------dg~~~~l~gigyG~---~iItn~HLf~rnng~L~I~s~hG~f~v~nt~~lki~~i~g~Diii 84 (241)
T 3mmg_A 15 SACVCLLENSS-------DGHSERLFGIGFGP---YIIANQHLFRRNNGELTIKTMHGEFAVANSTQLQMKPVEGRDIIV 84 (241)
T ss_dssp HTTEEEEEEEE-------TTEEEEEEEEEETT---EEEECGGGGSSTTCEEEEEETTEEEEEEEGGGSCEEECTBSSCEE
T ss_pred hheEEEEEEEe-------CCCEEEEEEEeECC---EEEEChhhcccCCCeEEEEECCceEEccCCCceeeEEeCCccEEE
Confidence 45677777643 22233345666654 99999999997667788888877433221 266678899999
Q ss_pred EEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCCC
Q 001276 122 FRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGS 201 (1109)
Q Consensus 122 Lk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G~ 201 (1109)
+|. |+++|+.+-. +.-..++.|++|..||..+..+...+ .+|.-....|.. +..+...-.++..|+
T Consensus 85 Irm-PkDfpPf~~k---l~FR~P~~~E~V~lVg~~fq~k~~~s--~vSesS~i~p~~--------~~~fWkHwIsT~~G~ 150 (241)
T 3mmg_A 85 IKM-AKDFPPFPQK---LKFRQPTIKDRVCMVSTNFQQKSVSS--LVSESSHIVHKE--------DTSFWQHWITTKDGQ 150 (241)
T ss_dssp EEC-CTTSCCCCSC---CCBCCCCTTCCEEEEEEEECSSCEEE--EEEEEECCEECT--------TSSEEEECBCCCTTC
T ss_pred EeC-CCCCCCcchh---cccCCCCCCCeEEEEEeecccCCccE--EECCcceeEEcC--------CCCEEEEEcCCCCCc
Confidence 999 6665543321 22356899999999998766553322 244333222221 123588999999999
Q ss_pred CCCceec-CCCcEEEEeccccCCCCCccccchH
Q 001276 202 SGSPVID-WQGRAVALNAGSKSSSASAFFLPLE 233 (1109)
Q Consensus 202 SGgPv~n-~~G~vVGi~~~~~~~~~~~falP~~ 233 (1109)
-|+|+++ .||.+|||++........+|+.|+.
T Consensus 151 CGlPlVs~~Dg~IVGiHsl~~~~~~~N~F~~f~ 183 (241)
T 3mmg_A 151 AGSPLVSIIDGNILGIHSLTHTTNGSNYFVEFP 183 (241)
T ss_dssp TTCEEEETTTCCEEEEEEEEETTTCCEEEEECC
T ss_pred CCCeEEEcCCCcEEEEEecccCCCCcEEEEcCC
Confidence 9999998 5999999999888778889997763
No 113
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A
Probab=98.60 E-value=1.3e-07 Score=97.49 Aligned_cols=158 Identities=11% Similarity=0.050 Sum_probs=91.8
Q ss_pred eeEE-EEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEeeCCCcEEEEEECCCCCCcccccceece---
Q 001276 650 FFGT-GVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLHPVHNFALIAYDPSSLGVAGASVVRAA--- 725 (1109)
Q Consensus 650 ~~Gs-G~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~dp~~dlAilk~d~~~l~~~~~~~v~~~--- 725 (1109)
..|| ||+|.. +...||||++|+ ..+...+.+...+ -...+..|+||||++...... ..|+.+
T Consensus 12 ~~ct~G~~v~~-~~~~~vlTaaHc-~~~~~~~~~G~~~---------~~~~~~~DiAlikl~~~~~~~---~~v~~i~~~ 77 (181)
T 2sga_A 12 SRCSLGFNVSV-NGVAHALTAGHC-TNISASWSIGTRT---------GTSFPNNDYGIIRHSNPAAAD---GRVYLYNGS 77 (181)
T ss_dssp EEEECCEEEEE-TTEEEEEECHHH-HTTCSEETTEEEE---------EEECSBSCEEEEEESCGGGCC---CEEECSSSC
T ss_pred CcEeccEEEEE-CCceEEEECccc-CCCCCceeeccee---------CCcCCCCCEEEEEccCCCccc---ceEEecCCc
Confidence 3566 999984 357899999665 4554444222221 123478899999997643221 234332
Q ss_pred --ecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCcccccceeEEEEecccCC-CCCceEEcCCee
Q 001276 726 --ELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDFGS-TFSGVLTDEHGR 802 (1109)
Q Consensus 726 --~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~~~~~~I~~d~~ig~-~sGGpL~d~~G~ 802 (1109)
.+.....++.|+.|+++|++.+. +.+.++.+... +... .. ......|+.+...++ .|||||++.+ +
T Consensus 78 ~~~~~~~~~~~~G~~v~~~G~~~~~----t~G~v~~~~~~--v~~~--~~--~~~~~~i~~~~c~~~GDSGGPlv~~~-~ 146 (181)
T 2sga_A 78 YQDITTAGNAFVGQAVQRSGSTTGL----RSGSVTGLNAT--VNYG--SS--GIVYGMIQTNVCAQPGDSGGSLFAGS-T 146 (181)
T ss_dssp EEECCEECCCCTTCEEEEEETTTEE----EEEEEEEEEEE--EECG--GG--CEEEEEEEESCCCCTTCTTCEEEETT-E
T ss_pred ceeecccccCCCCCEEEEeecCCCc----cEEEEEEeEEE--EECC--CC--CEEeeeEecccccCCCCCCCEEEECC-E
Confidence 23223347999999999988653 23444422111 1110 00 001245677755533 6999999976 9
Q ss_pred EEEEEeeccccccccCCCCCCceeEecccHHHHHHHH
Q 001276 803 VQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVL 839 (1109)
Q Consensus 803 VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l 839 (1109)
++||++..... ....... +..|++.++..+
T Consensus 147 ~vGI~s~g~~~-----~~~~~~~--v~~~v~~~~~~l 176 (181)
T 2sga_A 147 ALGLTSGGSGN-----CRTGGTT--FYQPVTEALSAY 176 (181)
T ss_dssp EEEEEEEEEEE-----TTTEEEE--EEEEHHHHHHHH
T ss_pred EEEEEEeeCCC-----CcCCCce--EEEEHHHHHHhc
Confidence 99998764321 1112234 569998887754
No 114
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=98.59 E-value=4.7e-08 Score=88.85 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=54.7
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHH--HHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLE--AFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~--~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
+++|..|.++|||+++||++||.|++|||+++.++. ++.+.++. .++.+.|+ +.|+|+.
T Consensus 28 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~g~~ 88 (91)
T 2pkt_A 28 PLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG--CTDNLTLT-VARSEHE 88 (91)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHT--CSSEEEEE-EEEECCC
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEECCcc
Confidence 789999999999999999999999999999999998 99999998 58999999 7888764
No 115
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=98.59 E-value=2.6e-08 Score=91.58 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=53.9
Q ss_pred CCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEEE
Q 001276 295 GETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGISM 358 (1109)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~~ 358 (1109)
...|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++... |+.+.|+|.|+++..
T Consensus 28 ~~~g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~~ 92 (96)
T 2v90_A 28 GRPGQFL-WEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQ-GSCVSLTVVDPEADR 92 (96)
T ss_dssp SCEEEEE-EEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECCCTTS
T ss_pred CCCCeEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEECCCCcc
Confidence 3467776 79999999999 999999999999999999 78888888665 899999999988653
No 116
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=98.58 E-value=1.2e-07 Score=85.39 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=53.2
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++..+ +.+.|+ +.|++.
T Consensus 27 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~--~~v~l~-v~R~~~ 86 (87)
T 2pa1_A 27 PIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP--SPLRLQ-LDRITS 86 (87)
T ss_dssp EEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC--SSEEEE-EEECCC
T ss_pred CEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC--CeEEEE-EEecCC
Confidence 7899999999999999999999999999999999 899999999854 789998 778764
No 117
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=98.58 E-value=1.4e-07 Score=90.79 Aligned_cols=83 Identities=18% Similarity=0.258 Sum_probs=61.3
Q ss_pred CCCccceEEEEcChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhH
Q 001276 259 PRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLK 334 (1109)
Q Consensus 259 ~rg~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~ 334 (1109)
.++++|+.+........+.+++. ...|++| ..|.++|||++ | |++||+|++|||+++.+ +.+
T Consensus 34 ~~~~lGi~v~~~~~~~~~~~~~~-------------~~~gv~V-~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~ 99 (123)
T 2iwq_A 34 PSKSLGISIVGGRGMGSRLSNGE-------------VMRGIFI-KHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQ 99 (123)
T ss_dssp TTSCCSEEEEECC---------C-------------CCCSEEE-EEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCCccEEEEeccCccccccccC-------------CCCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 46789999886443333322322 3567777 79999999999 9 99999999999999988 888
Q ss_pred HHHHHhcCCCCeEEEEEEECCE
Q 001276 335 LETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 335 l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
+..++... ++.++|+|.|...
T Consensus 100 ~~~~l~~~-~~~v~l~v~r~~~ 120 (123)
T 2iwq_A 100 AVEAIRKA-GNPVVFMVQSIIS 120 (123)
T ss_dssp HHHHHHHC-CSSEEEEEECCCC
T ss_pred HHHHHHcC-CCeEEEEEEECCc
Confidence 88888655 4589999988653
No 118
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Probab=98.58 E-value=3.5e-07 Score=96.97 Aligned_cols=136 Identities=20% Similarity=0.220 Sum_probs=85.6
Q ss_pred ccEEEEEEEeCCCcEEEeCccccCCCC-eEE----EEEecC------CeEEEEEEEEEcC--------CCcEEEEEEcCC
Q 001276 67 ASYATGFVVDKRRGIILTNRHVVKPGP-VVA----EAMFVN------REEIPVYPIYRDP--------VHDFGFFRYDPS 127 (1109)
Q Consensus 67 ~~~GSGfvV~~~~G~IlTn~HVv~~~~-~~~----~v~~~~------~~~~~a~vv~~d~--------~~DlAlLk~~~~ 127 (1109)
...|+|++|++ .+|||+||++.... ... .+.+.. +..+.++-+..+| .+||||||++..
T Consensus 29 ~~~CgGtLIs~--~~VLTAAHCv~~~~~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~DiAll~L~~~ 106 (215)
T 1p3c_A 29 GSSCTGTLIAP--NKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTN 106 (215)
T ss_dssp SCEEEEEEEET--TEEEECHHHHEETTTTEECCCCEEEETCBTTBCTTCCEEEEEEECCHHHHHHCCGGGCCEEEEESSC
T ss_pred CceEEEEEEeC--CEEEECccEeccCCCCccccceEEEEcccCCCCCCCeEEEEEEEeCCccccCCCcccCEEEEEECCC
Confidence 46899999996 49999999996321 223 454431 2245555555544 469999999863
Q ss_pred CcccccccCCCCCCccCCCCCEEEEEecCCCC-------CCeEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCCC
Q 001276 128 AIQFLNYDEIPLAPEAACVGLEIRVVGNDSGE-------KVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGG 200 (1109)
Q Consensus 128 ~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~-------~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~G 200 (1109)
+.. .+.++.|.......|+.+.++|++... ........++..... .......+..|
T Consensus 107 -~~~-~v~pi~l~~~~~~~g~~~~~~Gwg~~~~~~~~~~l~~~~~~~~~~~~c~---------------~~~~~~~~C~G 169 (215)
T 1p3c_A 107 -IGN-TVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTN---------------LAYYTIDTFSG 169 (215)
T ss_dssp -HHH-HHCCCCBCCCSCCTTCEEEEEECCHHHHHHHSSCCCEEEEEECCEECSS---------------EEEECCCCCTT
T ss_pred -Ccc-cceeeecCCCcccCCCeEEEecCCCCCcccccceechhccCccCcccch---------------heeeccccCCC
Confidence 211 244555555556789999999997321 111112121111100 01124567789
Q ss_pred CCCCceecCCCcEEEEecccc
Q 001276 201 SSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 201 ~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
.|||||+..+|.++||++.+.
T Consensus 170 DSGgPl~~~~g~lvGi~S~g~ 190 (215)
T 1p3c_A 170 NSGSAMLDQNQQIVGVHNAGY 190 (215)
T ss_dssp CTTCEEECTTSCEEEECCEEE
T ss_pred CCCCeeEccCCeEEEEEeccc
Confidence 999999988899999997654
No 119
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.58 E-value=3.8e-08 Score=94.03 Aligned_cols=89 Identities=24% Similarity=0.243 Sum_probs=69.3
Q ss_pred ccCCCcc----ceEEEEcChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC
Q 001276 257 SIPRGTL----QVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ 331 (1109)
Q Consensus 257 ~v~rg~l----g~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~ 331 (1109)
++.|+|+ ++.+...+ ..||+.-. .. ...|++| ..|.++|||++ ||++||+|++|||+++.+
T Consensus 11 ~v~r~~l~~~~~v~l~~~~----~~lG~~~~--------~~-~~~gv~V-~~V~~~spA~~aGL~~GD~Il~vng~~v~~ 76 (117)
T 1uit_A 11 RKDRPYVEEPRHVKVQKGS----EPLGISIV--------SG-EKGGIYV-SKVTVGSIAHQAGLEYGDQLLEFNGINLRS 76 (117)
T ss_dssp CSCCCCSCCCEEEEEECSS----CCCCEEEE--------EC-TTSCEEE-EEECTTSHHHHHTCCTTCEECEETTEETTT
T ss_pred ccccccCCCCEEEEEEeCC----CCccEEEE--------cc-CCCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCC
Confidence 6889999 88887543 34565410 01 2357766 79999999999 999999999999999999
Q ss_pred hhHHHHHH-hcCCCCeEEEEEEECCEEEE
Q 001276 332 FLKLETLL-DDGVDKNIELLIERGGISMT 359 (1109)
Q Consensus 332 ~~~l~~~l-~~~~g~~v~l~v~R~g~~~~ 359 (1109)
+.++...+ ....++.+.|+|.|+++..+
T Consensus 77 ~~~~~~~~~~~~~g~~v~l~v~r~~~~~~ 105 (117)
T 1uit_A 77 ATEQQARLIIGQQCDTITILAQYNPHVHQ 105 (117)
T ss_dssp CCHHHHHHHTTSCCSEEEEEECCCSCCCC
T ss_pred CCHHHHHHHHHcCCCeEEEEEEECCchhh
Confidence 98888766 44778999999999887543
No 120
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=98.57 E-value=4.3e-08 Score=89.12 Aligned_cols=60 Identities=25% Similarity=0.421 Sum_probs=52.4
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCEEE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGISM 358 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~v~R~g~~~ 358 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++.++. ++..++.. .|+.+.|+|.|+|+..
T Consensus 27 ~g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~~~ 89 (91)
T 2pkt_A 27 QPLAI-SRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARSEHES 89 (91)
T ss_dssp EEEEE-EEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEECCCC
T ss_pred CCeEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCccc
Confidence 46665 79999999999 99999999999999999998 66666666 8899999999988754
No 121
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=98.56 E-value=1.1e-07 Score=88.68 Aligned_cols=59 Identities=31% Similarity=0.496 Sum_probs=51.4
Q ss_pred CCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEEC
Q 001276 295 GETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERG 354 (1109)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~ 354 (1109)
...|++| ..|.++|||++ ||++||+|++|||+++.+ |.++...+....|+.+.|+|.|+
T Consensus 43 ~~~gv~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 104 (104)
T 3sfj_A 43 TDKGIYV-TRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 104 (104)
T ss_dssp TCCSEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred CCCCEEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence 4578777 69999999999 999999999999999966 55888888777889999999884
No 122
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*
Probab=98.55 E-value=4.9e-07 Score=96.53 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=96.8
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC-CeEEEEEec------CCeEEEEEEEEEcCC--
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFV------NREEIPVYPIYRDPV-- 116 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~-~~~~~v~~~------~~~~~~a~vv~~d~~-- 116 (1109)
-|-+|.|... ....++|.+|+++ +|||+||++... ...+.+.+. ++..+.++-+..+|.
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~hp~y~ 79 (224)
T 1pq7_A 12 FPFIVSISRN----------GGPWCGGSLLNAN--TVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRVHPSYS 79 (224)
T ss_dssp STTEEEEEET----------TEEEEEEEEEETT--EEEECHHHHTTSCGGGEEEEESCSBSSSSSEEECEEEEEECTTCB
T ss_pred cCeEEEEEEC----------CCeEEEEEEecCC--EEEEcHHccCCCCCCceEEEeCcceecCCCEEEEEEEEEECCCCC
Confidence 3567777631 2467999999964 999999999742 234566653 345677777777875
Q ss_pred ---CcEEEEEEcCCCcccccccCCCCC--CccCCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCCc
Q 001276 117 ---HDFGFFRYDPSAIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDGY 183 (1109)
Q Consensus 117 ---~DlAlLk~~~~~~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~~--~~~~~~~~~ 183 (1109)
+||||||++..-.....+.++.|. ...+..|+.+.+.|+..... .......+.-+... ...|.....
T Consensus 80 ~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~ 159 (224)
T 1pq7_A 80 GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAI 159 (224)
T ss_dssp TTBTCCEEEEESSCCCCBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHHHHHCTTTS
T ss_pred CCCCCEEEEEeCCCCcCCCcccceecCCcccCCCCCCEEEEEecCCcCCCCCcccceeeEeEEEEEcHHHhhHhhcCCCC
Confidence 599999998542111123344444 55668899999999864321 12222223222210 000100011
Q ss_pred cccceeeEEE-----eeccCCCCCCCceecCCCcEEEEecccc
Q 001276 184 NDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 184 ~~~~~~~iq~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
.+ ..+-+ ....-.|.|||||+..+|.++||.+.+.
T Consensus 160 ~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~g~l~Gi~S~g~ 199 (224)
T 1pq7_A 160 TN---QMFCAGVSSGGKDSCQGDSGGPIVDSSNTLIGAVSWGN 199 (224)
T ss_dssp CT---TEEEECCTTCCCBCCTTCTTCEEECTTCCEEEEEEECS
T ss_pred CC---CeEEeecCCCCCCCCcCCCCcceECcCCeEEEEEEeCC
Confidence 11 12222 1234579999999988899999998764
No 123
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=2.2e-07 Score=85.95 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=48.1
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCEE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++.++. ++...+.. ++.+.|+|.|+|+.
T Consensus 36 ~gv~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g~~ 96 (100)
T 2eeh_A 36 LGIFV-SKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS--SSRLHMMVRRMGSG 96 (100)
T ss_dssp CCEEE-EEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS--CSSEEEEEEECSCC
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC--CCEEEEEEEECCcC
Confidence 57776 79999999999 99999999999999999964 44344433 78999999998864
No 124
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=98.54 E-value=6e-08 Score=89.08 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=54.9
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++. . ++.+.|+ +.|++..
T Consensus 30 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~-g~~v~l~-v~r~~~~ 91 (96)
T 2v90_A 30 PGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQG-Q-GSCVSLT-VVDPEAD 91 (96)
T ss_dssp EEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHT-T-TTEEEEE-EECCCTT
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-C-CCEEEEE-EECCCCc
Confidence 38999999999999999999999999999999999 8999999998 3 8999999 7787754
No 125
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.54 E-value=5.5e-08 Score=93.91 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=58.0
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCeEEEEE
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLT 1074 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~ 1074 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.++++|.++++.. .++.+.|+ +.|+|..+...
T Consensus 48 ~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~l~~~-~g~~v~l~-v~R~g~~~~~~ 113 (124)
T 1wh1_A 48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSE-ENKNFSLL-IARPELQLDEG 113 (124)
T ss_dssp CCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHHHHHHHHTCS-SCCSCCEE-EEECSSCCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCHHHHHHHHHhC-CCCEEEEE-EEECCEEeecc
Confidence 489999999999999999 9999999999999999999999999984 58889998 78888754433
No 126
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=98.53 E-value=1e-07 Score=87.63 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=55.3
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++. .++.+.|+ +.|++..
T Consensus 32 ~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~~~~ 94 (97)
T 2jil_A 32 RPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ--CGQEAALL-IEYDVSE 94 (97)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH--SCSEEEEE-EEEECCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCCc
Confidence 489999999999999999 99999999999999999 9999999998 58999999 7787754
No 127
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=98.53 E-value=8.9e-08 Score=86.99 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=51.1
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+++||++||.|++|||+++. +++++.+.++.. ++.++|+ +.|++..
T Consensus 27 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~--g~~v~l~-v~r~~~~ 88 (91)
T 2vsp_A 27 PGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS--GKNVTLL-VCGKKAQ 88 (91)
T ss_dssp SCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTS--CSEEEEE-EEC----
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCEEEEE-EEeCCcc
Confidence 3789999999999999999999999999999999 999999999984 8899999 6777654
No 128
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=98.51 E-value=9e-08 Score=86.98 Aligned_cols=61 Identities=31% Similarity=0.474 Sum_probs=49.9
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCEEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGISM 358 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R~g~~~ 358 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++. ++.++..++... |+.+.|+|.|+++..
T Consensus 26 ~~g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~~ 89 (91)
T 2vsp_A 26 LPGSFI-KEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGKKAQD 89 (91)
T ss_dssp CSCCBC--CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC-----
T ss_pred CCCeEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCCccc
Confidence 457666 79999999999 99999999999999999 899999888766 899999999987653
No 129
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=98.50 E-value=1.1e-07 Score=87.30 Aligned_cols=62 Identities=23% Similarity=0.330 Sum_probs=52.8
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+++||++||.|++|||+++.++.++.........++.++|+ +.|+|+.
T Consensus 34 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~-v~R~g~~ 95 (97)
T 2w4f_A 34 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR-VWRERET 95 (97)
T ss_dssp CSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEE-EECCSSC
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEE-EEeCCcc
Confidence 4899999999999999999999999999999999987765444332358999999 7888864
No 130
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A
Probab=98.50 E-value=1.2e-07 Score=96.37 Aligned_cols=114 Identities=15% Similarity=0.065 Sum_probs=69.9
Q ss_pred cceeeEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEEEEEeeCCCcEEEEEECC--CCCCcccccceec
Q 001276 647 SQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGEVVFLHPVHNFALIAYDP--SSLGVAGASVVRA 724 (1109)
Q Consensus 647 ~~~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~vv~~dp~~dlAilk~d~--~~l~~~~~~~v~~ 724 (1109)
+..++|+||.|+ .+++|||+.| |+.+... .+++. +..+. +.+|+..|||+++++. ..+|.
T Consensus 27 ~~~GsGt~F~i~---g~~~VvTA~H-VVg~~~~-vVt~~--g~r~~---~~f~~~~D~All~i~~~~g~~P~-------- 88 (213)
T 3fan_A 27 SSMGSGGVFTID---GKIKCVTAAH-VLTGNSA-RVSGV--GFNQM---LDFDVKGDFAIADCPNWQGVAPK-------- 88 (213)
T ss_dssp SSEEEEEEEEET---TEEEEEEEGG-GSBTTEE-EEEET--TEEEE---EECEEETTEEEEECTTCCSCCCB--------
T ss_pred cCCCceEEEEEC---CcEEEEEecc-EeCCCCE-EEecC--CcEEE---EEecCCCcEEEEEccCcCCCCCc--------
Confidence 445678888888 6789999955 5555544 55544 66653 4779999999999953 46776
Q ss_pred eecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCcccccceeEEEEeccc---C-CCCCceEEcCC
Q 001276 725 AELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDF---G-STFSGVLTDEH 800 (1109)
Q Consensus 725 ~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~~~~~~I~~d~~i---g-~~sGGpL~d~~ 800 (1109)
++|+... ..|...+..-+ +.- ..+|+.|..+ + .+|||||+|.+
T Consensus 89 lKlA~~~--~~G~a~~~~~~----------gv~---------------------~G~i~~~~al~~T~pGdSGsPVvn~d 135 (213)
T 3fan_A 89 AQFCEDG--WTGRAYWLTSS----------GVE---------------------PGVIGNGFAFCFTACGDSGSPVITEA 135 (213)
T ss_dssp CCBCCTT--CCEEEEEEETT----------EEE---------------------EEEEETTEEEESSCCCSTTCEEEETT
T ss_pred ceeeeee--ccCceEEEEcc----------Ccc---------------------ccccccCCEEEecCCCCCCCccCCCC
Confidence 7776432 11111111110 000 0122222222 2 26999999999
Q ss_pred eeEEEEEeecc
Q 001276 801 GRVQAIWGSFS 811 (1109)
Q Consensus 801 G~VvGi~~~~~ 811 (1109)
|+||||++..-
T Consensus 136 G~VIGVHt~s~ 146 (213)
T 3fan_A 136 GELVGVHTGSN 146 (213)
T ss_dssp SCEEEEEEC--
T ss_pred CcEEEEEeccC
Confidence 99999998743
No 131
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.49 E-value=1.1e-07 Score=91.74 Aligned_cols=64 Identities=23% Similarity=0.413 Sum_probs=56.9
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHHHHHhcCCCCeEEEEEEECCEEEEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIELLIERGGISMTV 360 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~~~l~~~~g~~v~l~v~R~g~~~~~ 360 (1109)
..|++| ..|.++|||++ | |++||+|++|||++|.++.++..+|....|+.+.|+|.|+|+.++.
T Consensus 47 ~~gv~V-~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~ 112 (124)
T 1wh1_A 47 DIGIYI-SEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDE 112 (124)
T ss_dssp CCCEEE-EEECSSSHHHHTCCCCTTCEEEEESSCBCCSHHHHHHHHTCSSCCSCCEEEEECSSCCCC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCHHHHHHHHHhCCCCEEEEEEEECCEEeec
Confidence 367776 69999999999 9 9999999999999999999999999777789999999999876543
No 132
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=98.49 E-value=1.8e-07 Score=90.22 Aligned_cols=61 Identities=23% Similarity=0.291 Sum_probs=55.6
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++||++||.|++|||+++.++ +++.+.+.+.+.++.++|+ +.|++.
T Consensus 51 ~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~~~ 113 (124)
T 3tsv_A 51 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL-AQKKKD 113 (124)
T ss_dssp SCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEE-EEECHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE-EEECCc
Confidence 389999999999999999999999999999999999 9999999876678999998 677654
No 133
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=98.49 E-value=2.7e-07 Score=83.16 Aligned_cols=58 Identities=9% Similarity=0.087 Sum_probs=52.3
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++||++||.|++|||+++.++ +++.+.++.. ++.+.|+ +.|++.
T Consensus 28 ~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~--g~~v~l~-v~R~g~ 87 (88)
T 2uzc_A 28 PLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC--TGSLNMT-LQRESD 87 (88)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC--CSEEEEE-EECCCC
T ss_pred CeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCeEEEE-EEeCCC
Confidence 78999999999999999999999999999999999 8888888863 8889998 677763
No 134
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.49 E-value=2.8e-07 Score=88.90 Aligned_cols=66 Identities=27% Similarity=0.351 Sum_probs=59.0
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEee
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQ 1077 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk~ 1077 (1109)
.+++|..|.++|||+++ |++||.|++|||+++.++++|...+.....++.++|+ + |+|+ ..+++..
T Consensus 25 ~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~~dl~~~l~~~~~g~~v~l~-V-R~g~-~~v~l~~ 90 (125)
T 2hga_A 25 DGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINIT-T-DQGT-FHLKTGR 90 (125)
T ss_dssp CCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSHHHHHHHHTTCCTTCEEEEE-E-TTEE-EEEECCB
T ss_pred CceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEE-E-ECCE-EEEEEec
Confidence 58999999999999999 9999999999999999999999999976668999999 6 9998 5555553
No 135
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=98.49 E-value=2.9e-07 Score=83.40 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=51.5
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.++ .++..++... |+.+.|+|.|.+.
T Consensus 27 ~~gv~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 88 (90)
T 2he4_A 27 RPGQYI-RSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGPST 88 (90)
T ss_dssp SSSEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECCCC
T ss_pred CCCEEE-EEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEccCC
Confidence 357776 79999999999 9999999999999999998 7787777665 8899999999764
No 136
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=98.48 E-value=1.9e-07 Score=85.82 Aligned_cols=62 Identities=23% Similarity=0.357 Sum_probs=53.0
Q ss_pred CCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEECCEE
Q 001276 295 GETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~v~R~g~~ 357 (1109)
...|++| ..|.++|||++ ||++||+|++|||+++.++.++...+ ....|+.+.|+|.|+|+.
T Consensus 32 ~~~g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~ 95 (97)
T 2w4f_A 32 DDEGIFI-SRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERET 95 (97)
T ss_dssp TBCSEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEECCSSC
T ss_pred CCCCEEE-EEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEEEEeCCcc
Confidence 3467776 79999999999 99999999999999999998877554 335899999999998864
No 137
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=98.48 E-value=2.2e-07 Score=83.58 Aligned_cols=58 Identities=26% Similarity=0.417 Sum_probs=51.5
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++.... +.+.|+|.|+++
T Consensus 26 ~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~ 86 (87)
T 2pa1_A 26 TPIMV-TKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRITS 86 (87)
T ss_dssp EEEEE-EEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEECCC
T ss_pred CCEEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEecCC
Confidence 46666 79999999999 999999999999999999 788988887655 889999999875
No 138
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=98.48 E-value=1.2e-07 Score=87.52 Aligned_cols=60 Identities=23% Similarity=0.212 Sum_probs=54.2
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++.. .++.+.|+ +.|+|+
T Consensus 33 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~~~~l~-v~R~g~ 94 (98)
T 2jxo_A 33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLLV-VDRETD 94 (98)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEE-CCHHHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEE-EECCch
Confidence 38999999999999999999999999999999999 99999999986 57777787 677664
No 139
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=98.47 E-value=1.9e-08 Score=95.60 Aligned_cols=66 Identities=23% Similarity=0.347 Sum_probs=54.8
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEEEEEEEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGISMTVNLV 363 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~~~~~~v~ 363 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.++ .++...+.. .|+.+.|+|.|+++..++++.
T Consensus 37 ~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~~~~~~~ 105 (114)
T 2edz_A 37 TDGHLI-RVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK-SGNSVTLLVLDGDSYEKAVKN 105 (114)
T ss_dssp CCSCEE-ECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHH-TCSEEEEEEECHHHHHHHHHH
T ss_pred CCCeEE-EEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECCcceehhhc
Confidence 467777 69999999999 9999999999999999885 677777755 489999999998876554433
No 140
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=98.47 E-value=4.4e-07 Score=82.74 Aligned_cols=60 Identities=28% Similarity=0.379 Sum_probs=49.4
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.++.+.+.+-....|+.++|+|.|++.
T Consensus 28 ~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~g~~v~l~v~R~~~ 88 (93)
T 2dls_A 28 DRIVLV-QSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGSSS 88 (93)
T ss_dssp SSSCEE-EEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHTSSSEEEEEEECCCC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcCCCEEEEEEEECCC
Confidence 367776 69999999999 9999999999999999998666422233468999999999764
No 141
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=98.47 E-value=4e-07 Score=81.47 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=50.0
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEE
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVR 1062 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~ 1062 (1109)
+++|..+.++|||+++| |++||.|++|||+++. +++++.+.++..+.++.++|+
T Consensus 26 ~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~ 82 (85)
T 2i04_A 26 FLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLE 82 (85)
T ss_dssp CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEE
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence 68999999999999999 9999999999999999 569999999987668888887
No 142
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=98.47 E-value=3.8e-07 Score=87.55 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=54.9
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++..+.++.++|+ +.|+|+
T Consensus 58 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~g~ 121 (121)
T 2kom_A 58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLL-VFRQED 121 (121)
T ss_dssp CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEE-EEECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEE-EEeCCC
Confidence 379999999999999999 99999999999999988 59999999986668899998 677763
No 143
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=98.46 E-value=3.1e-07 Score=84.56 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=52.8
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.++ +++...++. .++.++|+ +.|+|+
T Consensus 37 ~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~g~ 98 (98)
T 1ihj_A 37 TGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE--ADFKIELE-IQTFDK 98 (98)
T ss_dssp EEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH--SCSEEEEE-EEEC--
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCCeEEEE-EEeCCC
Confidence 389999999999999999 999999999999999997 889999987 48899999 788763
No 144
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=98.46 E-value=2.3e-07 Score=84.79 Aligned_cols=55 Identities=18% Similarity=0.097 Sum_probs=50.3
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeC--CCHHHHHHHHHhC-CCCceEEEEE
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRT--PDLEAFVNVTKEI-EHGEFVRVRT 1063 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v--~~l~~f~~~l~~~-~~~~~v~l~~ 1063 (1109)
+++|..|.+||||+++||++||.|++|||+++ .+|+++.+.+++. +.++.+.|.+
T Consensus 40 ~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV 97 (101)
T 3qik_A 40 AVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLV 97 (101)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEE
Confidence 67899999999999999999999999999997 5999999999985 5688898884
No 145
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=98.46 E-value=3.5e-07 Score=86.32 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=55.4
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++..+.++.++|+ +.|++..
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~~~~ 103 (111)
T 2koj_A 39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLL-VFRQEEA 103 (111)
T ss_dssp SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEE-EEECCCC
T ss_pred cCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE-EEeCCCC
Confidence 389999999999999999 99999999999999966 59999999986668999999 6787753
No 146
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=98.45 E-value=3.4e-07 Score=82.86 Aligned_cols=58 Identities=29% Similarity=0.371 Sum_probs=52.5
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
.+++|..|.++|||+++||++||.|++|||+++.++ +++.+.++.. ++.+.|+ +.|.+
T Consensus 28 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~-v~r~~ 87 (90)
T 2he4_A 28 PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR--EDEARLL-VVGPS 87 (90)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTS--SSEEEEE-EECCC
T ss_pred CCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCcEEEE-EEccC
Confidence 389999999999999999999999999999999999 9999999973 7889998 56654
No 147
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=98.45 E-value=3.6e-07 Score=84.97 Aligned_cols=59 Identities=25% Similarity=0.325 Sum_probs=51.0
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++.. +..++|+ +.|.+.
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~-v~r~~~ 100 (103)
T 2fcf_A 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA--GNPVVFM-VQSIIS 100 (103)
T ss_dssp --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC--CSSEEEE-EECCCC
T ss_pred CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCcEEEE-EEECCC
Confidence 489999999999999999 99999999999999999 99999999985 3378888 566543
No 148
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=98.45 E-value=2.6e-07 Score=85.10 Aligned_cols=59 Identities=32% Similarity=0.545 Sum_probs=49.9
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.++ .++..++.. .|+.+.|+|.|+|+
T Consensus 36 ~~g~~V-~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~ 98 (98)
T 1ihj_A 36 TTGIFI-KGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEIQTFDK 98 (98)
T ss_dssp EEEEEE-EEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEEEC--
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEeCCC
Confidence 457776 79999999999 9 999999999999999997 666666655 78999999999874
No 149
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=98.45 E-value=1.6e-07 Score=86.31 Aligned_cols=60 Identities=30% Similarity=0.491 Sum_probs=53.3
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++.. .|+.+.|+|.|+++.
T Consensus 31 ~~~~~V-~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 94 (97)
T 2jil_A 31 SRPVVI-TSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEAALLIEYDVSE 94 (97)
T ss_dssp CEEEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEECCC
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCCc
Confidence 356665 79999999999 9 99999999999999999 8888888876 889999999998764
No 150
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=98.45 E-value=1.6e-07 Score=86.64 Aligned_cols=59 Identities=27% Similarity=0.391 Sum_probs=52.2
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++....++.+.|+|.|+|+
T Consensus 33 ~g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~ 94 (98)
T 2jxo_A 33 PGQFI-RSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94 (98)
T ss_dssp SCEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEECCHHHH
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCch
Confidence 47666 79999999999 999999999999999999 8999998877777788899988764
No 151
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.44 E-value=2.3e-07 Score=87.42 Aligned_cols=63 Identities=22% Similarity=0.336 Sum_probs=52.5
Q ss_pred CCCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEECCEEE
Q 001276 295 GETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIERGGISM 358 (1109)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~v~R~g~~~ 358 (1109)
...|++| ..|.++|||++ ||++||+|++|||+++.++.+++... ....|+.+.|+|.|+|+.+
T Consensus 44 ~~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~~ 108 (110)
T 1x5q_A 44 DDEGIFI-SRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGPS 108 (110)
T ss_dssp TCCSEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEECSSCC
T ss_pred CCCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhCCCCeEEEEEEECCccC
Confidence 3467776 69999999999 99999999999999999976666544 3348899999999998753
No 152
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=98.44 E-value=7.4e-07 Score=82.99 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=51.0
Q ss_pred CCcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEe
Q 001276 1007 GHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHL 1066 (1109)
Q Consensus 1007 ~~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~r 1066 (1109)
..|++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++. ..++.+.|+ +.|
T Consensus 44 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~g~~v~l~-v~R 103 (104)
T 3sfj_A 44 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTK-RSEEVVRLL-VTR 103 (104)
T ss_dssp CCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTC-TTCSEEEEE-EEE
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCCEEEEE-EEc
Confidence 358999999999999999999999999999999966 6699999987 458889988 444
No 153
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.44 E-value=2e-07 Score=90.34 Aligned_cols=68 Identities=22% Similarity=0.379 Sum_probs=59.9
Q ss_pred CceEEEEEecCCCcccc-CC-CCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEEEEEEEEee
Q 001276 297 TGLLVVDSVVPGGPAHL-RL-EPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGISMTVNLVVQ 365 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL-~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~~~~~v~l~ 365 (1109)
.|++| ..|.++|||++ || ++||+|++|||+++.+ +.++..++....|+.+.|++.|+|+..++++.+.
T Consensus 33 ~~~~V-~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~~~~ 104 (127)
T 1b8q_A 33 PPVII-SDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETT 104 (127)
T ss_dssp SCEEE-CCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCCCSEEECCCCC
T ss_pred CCEEE-EEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeCCceEEEEEEEE
Confidence 46555 79999999999 98 9999999999999999 8999998877788999999999998877766654
No 154
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=2.4e-07 Score=85.77 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=50.6
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++||++||.|++|||+++.++ +++.+.++. ++.+.|+ +.|+|+
T Consensus 36 ~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~---~~~v~l~-v~R~g~ 95 (100)
T 2eeh_A 36 LGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS---SSRLHMM-VRRMGS 95 (100)
T ss_dssp CCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS---CSSEEEE-EEECSC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC---CCEEEEE-EEECCc
Confidence 389999999999999999999999999999999995 666666654 7889998 788875
No 155
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.43 E-value=1.7e-07 Score=85.77 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=54.2
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+++||++||.|++|||+++.++ +++.+.++..+ +.++|+ +.|+|++
T Consensus 30 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~--~~v~l~-v~R~g~~ 91 (94)
T 1vb7_A 30 TPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA--SPLRLQ-LDRSSGP 91 (94)
T ss_dssp EEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCC--SSEEEE-EECCCCC
T ss_pred CCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC--CcEEEE-EEECCcC
Confidence 378999999999999999999999999999999998 99999999853 789998 7888864
No 156
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.43 E-value=8.7e-08 Score=91.47 Aligned_cols=64 Identities=19% Similarity=0.129 Sum_probs=54.6
Q ss_pred ceEEEEeecCCCHHhhh-ccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEE
Q 001276 900 QVLRVKGCLAGSKAENM-LEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIEL 967 (1109)
Q Consensus 900 ~~~~V~~V~~~spA~~a-L~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l 967 (1109)
.+++|..|.++|||+++ |++||+|++|||++|.++.++...+.....+ +.+.++|.|+++..++
T Consensus 42 ~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g----~~v~l~v~r~~~~~~~ 106 (117)
T 1uit_A 42 GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQC----DTITILAQYNPHVHQL 106 (117)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCC----SEEEEEECCCSCCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEECCchhhh
Confidence 47889999999999999 9999999999999999998887776444444 8899999999876543
No 157
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=98.42 E-value=5e-07 Score=83.36 Aligned_cols=58 Identities=24% Similarity=0.209 Sum_probs=53.2
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++||++||.|++|||+++. +++++...++. .++.+.|+ +.|++.
T Consensus 35 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~r~~~ 94 (99)
T 3khf_A 35 HHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLK--SGNKISLR-TTALEN 94 (99)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHH--SCSEEEEE-EECSCS
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCCEEEEE-EEECCC
Confidence 779999999999999999999999999999999 89999999995 58899999 677765
No 158
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=98.42 E-value=2.6e-07 Score=84.26 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=49.9
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++||++||.|++|||+++.++.++ ++++.+..++.++|+ +.|++.
T Consensus 30 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~-~~~~~~~~g~~v~l~-v~R~~~ 88 (93)
T 2dls_A 30 IVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHL-EVVKLIKSGAYVALT-LLGSSS 88 (93)
T ss_dssp SCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHH-HHHHHHTSSSEEEEE-EECCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHH-HHHHhhcCCCEEEEE-EEECCC
Confidence 78999999999999999999999999999999997555 455554569999999 677653
No 159
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.42 E-value=2e-07 Score=89.74 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=55.7
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.++|..|.++|||+++| |++||.|++|||+++.+ ++++.++++..+.++.++|+ +.|++..
T Consensus 46 ~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~~~~ 109 (122)
T 1v5q_A 46 PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLE-IEFDVAE 109 (122)
T ss_dssp CCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEE-EEEECCC
T ss_pred CcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE-EEECCcc
Confidence 57999999999999999 99999999999999988 99999999997668899999 7787753
No 160
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=98.42 E-value=3e-07 Score=82.22 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=50.0
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
+++|..|.++|||+++||++||.|++|||+++.++ .++...++.. +..++|+ +.|++
T Consensus 26 ~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~-v~R~~ 84 (85)
T 1rgw_A 26 PLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA--SYNLSLT-LQKSK 84 (85)
T ss_dssp CCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTC--SSCEEEE-EESCC
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcC--CCeEEEE-EEeCC
Confidence 67999999999999999999999999999999998 7888888763 4568888 67776
No 161
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=98.42 E-value=1.3e-07 Score=90.31 Aligned_cols=61 Identities=25% Similarity=0.516 Sum_probs=52.7
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC---ChhHHHHHHhcCCCCeEEEEEEECCEEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT---QFLKLETLLDDGVDKNIELLIERGGISM 358 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~---~~~~l~~~l~~~~g~~v~l~v~R~g~~~ 358 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++. ++.++..++.. .|+.+.|+|.|+++..
T Consensus 48 ~~gv~V-~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 113 (117)
T 2o2t_A 48 ELGIFV-QEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK-AKDTVQLVIARGSLPQ 113 (117)
T ss_dssp CEEEEE-CCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH-CCSEEEEEEESSCCGG
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCEEEEEEEeCCcce
Confidence 356666 79999999999 9 9999999999999998 88888877755 6889999999988643
No 162
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=98.41 E-value=3.9e-07 Score=82.10 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=49.2
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
.+++| ..|.++|||++ ||++||+|++|||+++.++ .++..++... ++.+.|+|.|++.
T Consensus 27 ~~~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~ 87 (88)
T 2uzc_A 27 MPLTI-SSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRESD 87 (88)
T ss_dssp EEEEE-EEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCCC
T ss_pred CCeEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCCC
Confidence 45555 79999999999 9999999999999999998 5666665544 8899999999874
No 163
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=98.41 E-value=6e-07 Score=83.83 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=52.7
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEee
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQ 1077 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk~ 1077 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ +.++...++. .++.++|+ +.|++....+.+.+
T Consensus 33 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~R~~~~~~~~~~p 102 (105)
T 2awx_A 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKN--TSDFVYLK-VAKPTSMYISRHHH 102 (105)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHS--CCSEEEEE-EECCCC--------
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEcCCCCCCccccc
Confidence 389999999999999999 99999999999999966 6777788876 37889999 78999887777665
No 164
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2
Probab=98.41 E-value=9.1e-06 Score=87.34 Aligned_cols=155 Identities=18% Similarity=0.162 Sum_probs=91.5
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec---------CCeEEEEEEEEEcC--
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDP-- 115 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~---------~~~~~~a~vv~~d~-- 115 (1109)
|-+|.|... ....++|.+|+++ +|||+||++. .. ..+.+. ....+.++-+..+|
T Consensus 13 Pw~v~l~~~----------~~~~CgGsLIs~~--~VLTAAHC~~-~~--~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y 77 (237)
T 1gvz_A 13 PWQVAVYHQ----------GHFQCGGVLVHPQ--WVLTAAHCMS-DD--YQIWLGRHNLSKDEDTAQFHQVSDSFLDPQF 77 (237)
T ss_dssp TTEEEEEET----------TEEEEEEEEEETT--EEEECGGGCC-SS--CEEEESCSBTTSCCTTCEEECEEEEEECTTS
T ss_pred CeEEEEeeC----------CceEEEeEEeeCC--EEEEcHHhCC-CC--CeEEEeecccccCCCCceEEEeeeEecCCcc
Confidence 567777531 2467999999964 9999999997 22 334332 13456666666665
Q ss_pred ----------------CCcEEEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCC-C-C----eEEEEEEEEecC
Q 001276 116 ----------------VHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGE-K-V----SILAGTLARLDR 173 (1109)
Q Consensus 116 ----------------~~DlAlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~-~-~----si~~G~vs~~~~ 173 (1109)
.+||||||++..-.-...+.++.|.......|+.+.+.|+.... . . ......+.-+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~ 157 (237)
T 1gvz_A 78 DLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSN 157 (237)
T ss_dssp CGGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEEEECSCTTTCSEEEEEEEEEEEEECG
T ss_pred CcccccccccccccccCCceEEEEeCCCcccCCcEeeeECCCCCCCCCCEEEEECCCcccCCCCCCCCccEEEEEeEeCh
Confidence 68999999985421111345566666667889999999986431 1 1 111222222211
Q ss_pred --CCCCCCCCCccccceeeEEEe-----eccCCCCCCCceecCCCcEEEEecccc
Q 001276 174 --DAPHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 174 --~~~~~~~~~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
-...|.. ...+ ..+=+. ..+-.|.|||||+- +|.++||.+.+.
T Consensus 158 ~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~ 207 (237)
T 1gvz_A 158 EKCARAYPE-KMTE---FVLCATHRDDSGSICLGDSGGALIC-DGVFQGITSWGY 207 (237)
T ss_dssp GGGCSSCGG-GCCT---TEEEEECSSTTCEECGGGTTCEEEE-TTEEEEEECCCS
T ss_pred hHhhhhhhh-cCCC---ceEEEeeCCCCCccCCCCccCcEee-CCEEEEEEEeCC
Confidence 1111111 1111 112221 12456899999996 789999998765
No 165
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=98.41 E-value=5.6e-07 Score=81.29 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=51.1
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++||++||.|++|||+++. +++++...++.. ++.+.|+ +.|++.
T Consensus 28 ~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~--g~~v~l~-v~R~~~ 87 (89)
T 2q3g_A 28 PLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRAC--GERLSLG-LSRAIT 87 (89)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTC--TTEEEEE-EEEECC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCEEEEE-EEeCCC
Confidence 789999999999999999999999999999999 468888888863 7789998 677664
No 166
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.40 E-value=3.7e-07 Score=85.99 Aligned_cols=60 Identities=25% Similarity=0.422 Sum_probs=51.0
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHH--HHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEA--FVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~--f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+++||++||.|++|||+++.++.+ ....++. .++.++|+ +.|+|+.
T Consensus 46 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~g~~ 107 (110)
T 1x5q_A 46 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG--AGTAVQMR-VWRESGP 107 (110)
T ss_dssp CSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS--CCSEEEEE-EEECSSC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhC--CCCeEEEE-EEECCcc
Confidence 48999999999999999999999999999999999544 4444444 58999999 7888864
No 167
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=98.40 E-value=8.6e-07 Score=79.83 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=47.6
Q ss_pred CCceEEEEEecCCCccccCCCCCCEEEEECCEEeCCh--hHHHHHHh-cCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQF--LKLETLLD-DGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~--~~l~~~l~-~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..| ++|||+.||++||+|++|||+++.++ .++...+. ...|+.+.|+|.|+|+
T Consensus 26 ~~~~~v-~~v-~~spA~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 87 (88)
T 3bpu_A 26 GGGQRV-KQI-VDSPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQTR 87 (88)
T ss_dssp SSSEEE-EEC-CC--CCTTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEECC
T ss_pred CCcEEE-EEe-cCChhHhCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCCc
Confidence 356665 566 99999989999999999999999987 77777776 4678999999999874
No 168
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=98.40 E-value=4.8e-07 Score=81.51 Aligned_cols=59 Identities=29% Similarity=0.306 Sum_probs=50.0
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..+ ++|||+ +||++||.|++|||+++.++ +++.+.+++.+.++.++|+ +.|+|+
T Consensus 27 ~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~g~ 87 (88)
T 3bpu_A 27 GGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLL-VQRQTR 87 (88)
T ss_dssp SSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEE-EEEECC
T ss_pred CcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEE-EEeCCc
Confidence 37888887 999999 99999999999999999998 9999999876668999998 677664
No 169
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A
Probab=98.40 E-value=1.3e-05 Score=85.40 Aligned_cols=181 Identities=18% Similarity=0.298 Sum_probs=101.8
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC---------CeEEEEEEEEEcCC
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV 116 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~---------~~~~~a~vv~~d~~ 116 (1109)
-|-+|.|.... .......++|.+|+++ +|||+||++.. ...+.+.. ...+...-+..+|.
T Consensus 12 ~Pw~v~l~~~~------~~~~~~~CgGtLI~~~--~VLTAAhC~~~---~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~ 80 (226)
T 4ag1_A 12 RPYMAYLEIVT------SNGPSKFCGGFLIRRN--FVLTAAHCAGR---SITVTLGAHNITEEEDTWQKLEVIKQFRHPK 80 (226)
T ss_dssp STTEEEEEEEC------SSSSCEEEEEEEEETT--EEEECGGGCCS---EEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred CCcEEEEEEEc------CCCcccEEEEEEEeCC--EEEECcccCCC---CeEEEeCCcccCCCCCcceEEEEEEEEeCCC
Confidence 46678887642 1222567999999964 99999999963 45555532 24566666777776
Q ss_pred -------CcEEEEEEcCCCcccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecCCC-CCCCCC
Q 001276 117 -------HDFGFFRYDPSAIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRDA-PHYKKD 181 (1109)
Q Consensus 117 -------~DlAlLk~~~~~~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~~-~~~~~~ 181 (1109)
+||||||++........+.++.|. ...+..|+.+.+.|+..... .......+.-+.... ..+.
T Consensus 81 y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~-- 158 (226)
T 4ag1_A 81 YNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFR-- 158 (226)
T ss_dssp CCTTTCTTCCEEEEESSCCCCCSSSCCCCCC-----CCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECGGGGTTST--
T ss_pred CCCCCCcCcEEEEEECCCCccCCceeccccCCcccCCCCCCEEEEEECCCCCCCCCCCCEeEEEEEEEcChHHccccc--
Confidence 699999997532111123344443 34457899999999863311 122222222222110 0111
Q ss_pred CccccceeeEEE-----eeccCCCCCCCceecCCCcEEEEeccccCCC-CCccccchHHHHHHHHHH
Q 001276 182 GYNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSSS-ASAFFLPLERVVRALRFL 242 (1109)
Q Consensus 182 ~~~~~~~~~iq~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~~-~~~falP~~~i~~~l~~l 242 (1109)
.+.. ...+-+ ....-.|.|||||+- ++.++||.+.+.... ..+.+..+...+..+++.
T Consensus 159 ~~~~--~~~~Ca~~~~~~~~~C~GDsGgPl~~-~~~l~Gi~S~g~~c~~~p~vyt~v~~~~~WI~~~ 222 (226)
T 4ag1_A 159 DFDH--NLQLCVGNPRKTKSAFKGDSGGPLLC-AGVAQGIVSYGRSDAKPPAVFTRISHYRPWINQI 222 (226)
T ss_dssp TCCT--TTEEEESCTTSCCBCCTTCTTCEEEE-TTEEEEEEEECBTTCCSCEEEEEHHHHHHHHHHH
T ss_pred CcCc--cceEeeccCCCCCcCccCCCCCceEE-cCEEEEEEEECCCCCCCCCEEEEhHHHHHHHHHH
Confidence 1110 011222 123456999999996 679999998765432 234455555555555443
No 170
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.40 E-value=6.8e-07 Score=78.92 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=50.0
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
+++|..+.++|||+++| |++||.|++|||+++. +++++.+.++.. +..+.|+ +.|+|
T Consensus 22 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~-v~R~g 81 (81)
T 2rcz_A 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS--KGKLKMV-VQRDE 81 (81)
T ss_dssp EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTS--TTEEEEE-EEC--
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC--CCeEEEE-EEeCC
Confidence 78999999999999999 9999999999999999 999999999974 3478888 56654
No 171
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=98.39 E-value=7e-07 Score=81.02 Aligned_cols=60 Identities=23% Similarity=0.339 Sum_probs=47.9
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEEE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGISM 358 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~~~ 358 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++.++ .++..++.. .++.+.|+|.|++...
T Consensus 24 ~~~~V-~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 86 (91)
T 2f5y_A 24 SPVRV-QAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS-CPSEIILLVWRMVPQV 86 (91)
T ss_dssp SSCEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEECC---
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCCCC
Confidence 56665 79999999999 9999999999999999964 566666544 4678999999987654
No 172
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.39 E-value=1.5e-07 Score=87.62 Aligned_cols=66 Identities=8% Similarity=0.020 Sum_probs=57.1
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEee
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQ 1077 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk~ 1077 (1109)
+++|..|.++|||+++||++||.|++|||+++.++ .++...++. .++.+.|+ +.|++..+.+++++
T Consensus 30 ~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~g~~~~~~v~p 97 (103)
T 1wf7_A 30 PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKA--CTGSLNMT-LQRASAAAKSEPVS 97 (103)
T ss_dssp EEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHH--CSSEEEEE-ECCCSCCCCCCCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCCcCCCCCCC
Confidence 68999999999999999999999999999999987 777777776 37789998 78998876666655
No 173
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}
Probab=98.39 E-value=7.1e-06 Score=87.18 Aligned_cols=176 Identities=13% Similarity=0.072 Sum_probs=97.0
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEe---CCCcEEEeCccccCCCC-----eEEEEEec--CC----eEEEEEEE
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVD---KRRGIILTNRHVVKPGP-----VVAEAMFV--NR----EEIPVYPI 111 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~---~~~G~IlTn~HVv~~~~-----~~~~v~~~--~~----~~~~a~vv 111 (1109)
-+.+++|.+.. ......|+|.+|+ ++ +|||++|++.... ..+.+... +. ..+.++-+
T Consensus 6 ~p~~g~l~~~~-------~~~~~~CgGslI~s~s~~--~VLTAAHC~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~v~~~ 76 (218)
T 3cp7_A 6 SPHIGKVFFST-------NQGDFVCSANIVASANQS--TVATAGHCLHDGNGGQFARNFVFAPAYDYGESEHGVWAAEEL 76 (218)
T ss_dssp CTTEEEEEEEE-------TTEEEEEEEEEBCCTTSC--EEEECGGGTBCCTTCBBCEEEEEEETCSSSCCTTCCEEEEEE
T ss_pred CceEEEEEEEc-------CCCCeEEEEEEEecCCCC--EEEEChHhcCcCCCCeeecCEEEECcccCCCCCccEEEEEEE
Confidence 46788887642 1234679999998 54 9999999996431 23444432 11 13444444
Q ss_pred EEc--------CCCcEEEEEEcCCC-cccc-ccc-CCCCCCccCCCCCEEEEEecCCCCC---Ce-EEEEEEEEecCCCC
Q 001276 112 YRD--------PVHDFGFFRYDPSA-IQFL-NYD-EIPLAPEAACVGLEIRVVGNDSGEK---VS-ILAGTLARLDRDAP 176 (1109)
Q Consensus 112 ~~d--------~~~DlAlLk~~~~~-~~~~-~l~-~l~l~~~~~~~G~~V~~iG~p~g~~---~s-i~~G~vs~~~~~~~ 176 (1109)
..+ ..+||||||++... +.+- .+. .++|.... ..|+.+.+.|++.... .. ..+ .......
T Consensus 77 ~~hp~y~~~~~~~~DiAll~L~~~~~~~~~~~v~~~~~l~~~~-~~g~~~~v~GwG~~~~~~~~~l~~C---~~~~~~~- 151 (218)
T 3cp7_A 77 VTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQ-PRGQYYSAYGYPAAAPFNGQELHSC---HGTATND- 151 (218)
T ss_dssp EECHHHHHHCCGGGCCEEEEECCBTTBCHHHHHSCCBCBCCSC-CSSCEEEEEECCCSTTCCSSSCEEE---EEECEEC-
T ss_pred EECcccccCCCCcCCEEEEEEeCCCCcChhHhcCcccceeecC-CCCCEEEEEeCCCCCCCCCceeeEe---eeeEEcC-
Confidence 443 34799999998651 1111 122 33443322 4799999999986421 11 111 1100000
Q ss_pred CCCCCCccccceeeEEEeeccCCCCCCCceecC---CCcEEEEeccccCCC-CCccccch-HHHHHHHHHHH
Q 001276 177 HYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDW---QGRAVALNAGSKSSS-ASAFFLPL-ERVVRALRFLQ 243 (1109)
Q Consensus 177 ~~~~~~~~~~~~~~iq~~a~~~~G~SGgPv~n~---~G~vVGi~~~~~~~~-~~~falP~-~~i~~~l~~l~ 243 (1109)
.+.+ . .+..-+....|.|||||+.. .++++||++.+.... ...|.-.. +.++.+++..+
T Consensus 152 -----~~~~-~--~~~~~Ca~~~GDSGGPlv~~~~g~~~lvGIvS~G~gc~~~~~~~p~~~~~~~~l~~~a~ 215 (218)
T 3cp7_A 152 -----PMGS-S--TQGIPCNMTGGSSGGPWFLGNGTGGAQNSTNSYGYTFLPNVMFGPYFGSGAQQNYNYAS 215 (218)
T ss_dssp -----TTSS-S--CEEEECCCCTTCTTCEEEESSSSSSCEEEECCEEETTEEEEEEECCCCHHHHHHHHHHT
T ss_pred -----CCCC-c--eEEecCCCCCCCcCCeeEEccCCCeEEEEEEccccCCCCCcEEcCcCCHHHHHHHHHHH
Confidence 0001 0 11222335679999999854 378999998765432 23333222 56666666654
No 174
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.39 E-value=1.6e-07 Score=89.71 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=56.2
Q ss_pred CcEEEEEecC--CChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCeEE
Q 001276 1008 HGVYVARWCH--GSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGKPR 1071 (1109)
Q Consensus 1008 ~gV~V~~v~~--gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~~~ 1071 (1109)
.+++|..|.+ +|||+++||++||.|++|||+++.++ ++|.+.++.. ++.+.|+ +.|++...
T Consensus 44 ~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~--g~~v~l~-v~R~g~~~ 108 (118)
T 2yub_A 44 TTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT--SQTLQLL-IEHDPVPQ 108 (118)
T ss_dssp CEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC--SSCEEEE-EEECSSCC
T ss_pred CcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhC--CCEEEEE-EEECCEEE
Confidence 4899999999 99999999999999999999999999 9999999985 8889998 78888764
No 175
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Probab=98.38 E-value=2.6e-06 Score=90.83 Aligned_cols=175 Identities=15% Similarity=0.222 Sum_probs=98.7
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC-CeEEEEEecCC----------eEEEEEEEEEc-
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFVNR----------EEIPVYPIYRD- 114 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~-~~~~~v~~~~~----------~~~~a~vv~~d- 114 (1109)
|-+|.|... ....++|.+|+++ +|||+||++... .....|.+... ..+..+-+..+
T Consensus 13 Pw~v~l~~~----------~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~h~ 80 (225)
T 1a7s_A 13 PFLASIQNQ----------GRHFCGGALIHAR--FVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENG 80 (225)
T ss_dssp TTEEEEEET----------TEEEEEEEEEETT--EEEECGGGC----CCSEEEEESCSSTTSCCTTTCEEEEEEEEECSS
T ss_pred CcEEEEecC----------CCcEEEEEEeeCC--EEEEchhccCCCCCCceEEEEeeeECCCCCCcceeEEeEEEEeccc
Confidence 567777642 2467999999964 999999999742 23455655421 34555544443
Q ss_pred -----CCCcEEEEEEcCCC-cccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecCCCCCCCCC
Q 001276 115 -----PVHDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRDAPHYKKD 181 (1109)
Q Consensus 115 -----~~~DlAlLk~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~~~~~~~~ 181 (1109)
..+||||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+.-+....
T Consensus 81 y~~~~~~~DIALl~L~~~~~~~-~~v~pi~L~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~------ 153 (225)
T 1a7s_A 81 YDPQQNLNDLMLLQLDREANLT-SSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQ------ 153 (225)
T ss_dssp CBTTTTBSCCEEEEESSCCCCB-TTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTCCCCSSCEEEEEEECCGGG------
T ss_pred ccCCCCcCCEEEEEcCCcccCC-CceeEEEcCCCcCCCCCCCEEEEEeCCcCCCCCCcccccceeeeEECCHHH------
Confidence 34799999998542 11 123344443 33457899999999864321 112222222221110
Q ss_pred CccccceeeEEE-----eeccCCCCCCCceecCCCcEEEEeccccCC--CCCccccchHHHHHHHHHHHhc
Q 001276 182 GYNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSS--SASAFFLPLERVVRALRFLQER 245 (1109)
Q Consensus 182 ~~~~~~~~~iq~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~--~~~~falP~~~i~~~l~~l~~~ 245 (1109)
-.. ..+-+ ....-.|.|||||+-. |.++||.+.+... ...+.+.-+...+..++...+.
T Consensus 154 -C~~---~~~Ca~~~~~~~~~C~GDSGgPl~~~-g~l~Gi~S~g~~~C~~~p~vyt~V~~~~~WI~~~~~~ 219 (225)
T 1a7s_A 154 -CRP---NNVCTGVLTRRGGICNGDGGTPLVCE-GLAHGVASFSLGPCGRGPDFFTRVALFRDWIDGVLNN 219 (225)
T ss_dssp -SCT---TEEEEECSSSSCBCCTTCTTCEEEET-TEEEEEEEEECSSTTSSCEEEEEGGGGHHHHHHHHHS
T ss_pred -hcc---CceEEeccCCCCCcccCCCcchheeC-CEEEEEEEEccCCcCCCCcEEEEhHHhHHHHHHHhcC
Confidence 000 11211 1244569999999965 7999999876322 1144555566666666554433
No 176
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=98.38 E-value=6.1e-07 Score=84.04 Aligned_cols=61 Identities=26% Similarity=0.341 Sum_probs=52.5
Q ss_pred CCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEECCEE
Q 001276 296 ETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~v~R~g~~ 357 (1109)
..|++| ..|.++|||+.||++||+|++|||+++.++.++...+ ....|+.+.|+|.|+++.
T Consensus 38 ~~gv~V-~~V~~~spA~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~ 99 (107)
T 2h2b_A 38 ETSIVI-SDVLKGGPAEGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGG 99 (107)
T ss_dssp CCCEEE-EEECTTSTTBTTBCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEESCC
T ss_pred CCCEEE-EEECCCCchhhCCCCCCEEEEECCEECCCccHHHHHHHhhCCCCEEEEEEEECCCC
Confidence 457776 7999999999899999999999999999998887665 346789999999998753
No 177
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.38 E-value=4.2e-07 Score=84.24 Aligned_cols=60 Identities=27% Similarity=0.355 Sum_probs=50.3
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.++.+...+.....++.+.|+|.|+|+
T Consensus 34 ~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~v~l~v~R~g~ 94 (101)
T 1uez_A 34 GVGIYV-SLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGR 94 (101)
T ss_dssp TCCEEE-EEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSSSSCCEEECCCCC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhcCCCeEEEEEEECCc
Confidence 357776 79999999999 9999999999999999999885543344567789999999875
No 178
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}
Probab=98.38 E-value=1.3e-05 Score=85.89 Aligned_cols=187 Identities=14% Similarity=0.151 Sum_probs=102.6
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC-------C-eEEEEEEEEEcC--
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN-------R-EEIPVYPIYRDP-- 115 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~-------~-~~~~a~vv~~d~-- 115 (1109)
-|-+|.|... ......++|.+|++ .+|||+||++.. ...+.+-..+ . ..+..+.+..++
T Consensus 12 ~Pw~v~l~~~--------~~~~~~CgGtLI~~--~~VLTAAHC~~~-~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~ 80 (238)
T 4e7n_A 12 HRFLVALYTS--------RSRTLFCGGTLINQ--EWVLTAAHCDRK-NFRIKLGMHSKKVPNEDEQTRVPKEKFFCLSSK 80 (238)
T ss_dssp CTTEEEEECT--------TTCCEEEEEEECSS--SEEEECGGGCCS-SCEEEESCSCSSSCCTTCEEECEEEEECSSTTC
T ss_pred cCcEEEEEEC--------CCCCEEEEEEEecC--CEEEEhHHcCCC-CCeEEeceeeccccCCCceeEeeeeeEEcCCCC
Confidence 4567777542 12356899999996 499999999983 3333332221 1 122333343344
Q ss_pred -----CCcEEEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCC
Q 001276 116 -----VHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDG 182 (1109)
Q Consensus 116 -----~~DlAlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~~--~~~~~~~~ 182 (1109)
.+||||||++..-.....+.++.|.......|+.+.+.|+..... .......+.-+... ...|....
T Consensus 81 ~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~ 160 (238)
T 4e7n_A 81 NYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFE 160 (238)
T ss_dssp CCCSSSCCCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECGGGGTTTCGGGC
T ss_pred CCCCCCCcEEEEEeCCCccCCCceeeeeCCCCCCCCCCEEEEEECCCCCCCCCCCCccceEeeccccCHHHHhhhccccc
Confidence 369999999754211123456666666778899999999864221 11222223222211 11111100
Q ss_pred ccccceeeEEE-----eeccCCCCCCCceecCCCcEEEEeccccCC----CCCccccchHHHHHHHHHHHhc
Q 001276 183 YNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQER 245 (1109)
Q Consensus 183 ~~~~~~~~iq~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falP~~~i~~~l~~l~~~ 245 (1109)
.. .....+-+ ....-.|.|||||+- +++++||.+.+... ...+.+.-+...+..+++..++
T Consensus 161 ~~-~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~ 230 (238)
T 4e7n_A 161 LP-ATSRTLCAGILEGGKDTCKGDSGGPLIC-NGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAG 230 (238)
T ss_dssp CC-SCCSEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEESGGGHHHHHHHHTT
T ss_pred CC-CCCCeEEeCCCCCCCccCCCCCCcceEE-CCEEEEEEEEeCCCCCCCCCCeEEEEhHHHHHHHHHHHhc
Confidence 00 01112222 123456999999996 67899999876541 2234455555666666555444
No 179
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.38 E-value=8e-07 Score=85.56 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=54.7
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
.+++|..|.++|||+++| |++||.|++|||+++. +++++.++++..+.++.++|+ +.|++
T Consensus 44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~~ 106 (123)
T 1ueq_A 44 EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLV-LCRGY 106 (123)
T ss_dssp CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEE-EEESC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE-EEeCC
Confidence 378999999999999999 9999999999999999 689999999987668999999 67765
No 180
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=98.38 E-value=4.5e-07 Score=82.07 Aligned_cols=58 Identities=12% Similarity=0.214 Sum_probs=51.3
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeC--CCHHHHHHHHHhCCCCceEEEEEEEeC
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVRTVHLN 1067 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v--~~l~~f~~~l~~~~~~~~v~l~~v~rd 1067 (1109)
+++|..|.++|||+++| |++||.|++|||+++ .+++++.+.++..+.+..++|+ +.|.
T Consensus 28 ~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~-v~R~ 88 (90)
T 2q9v_A 28 PIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLT-VRQT 88 (90)
T ss_dssp CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEE-EEEC
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE-EEec
Confidence 68999999999999999 999999999999999 6689999999986545689988 5554
No 181
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.37 E-value=2.2e-07 Score=86.47 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=54.6
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
+++|..|.++|||+++||++||.|++|||+++.+ ++++.++++.. ++.++|+ +.|+++.
T Consensus 30 ~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~--g~~v~l~-v~R~g~~ 90 (103)
T 1v5l_A 30 PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA--SYQLCLK-IDRAETR 90 (103)
T ss_dssp EEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC--CSEEECE-ECCCTTT
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCeEEEE-EEECCeE
Confidence 7899999999999999999999999999999999 99999999984 8899998 7888764
No 182
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=98.37 E-value=8.4e-07 Score=85.41 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=51.6
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++.. +..++|+ +.|..
T Consensus 59 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~--~~~v~l~-v~r~~ 119 (123)
T 2iwq_A 59 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA--GNPVVFM-VQSII 119 (123)
T ss_dssp CSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC--CSSEEEE-EECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEECC
Confidence 489999999999999999 99999999999999998 99999999984 4478888 56544
No 183
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=98.37 E-value=7e-07 Score=83.86 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=53.5
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhC--CCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEI--EHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~--~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++.. + +..++|+ +.|.+.+
T Consensus 33 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~-~~~v~l~-v~R~~~~ 98 (108)
T 3cbz_A 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK-PGPIVLT-VAKSGGG 98 (108)
T ss_dssp CEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS-SSCEEEE-EECCCC-
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC-CCeEEEE-EEeCCCC
Confidence 389999999999999999 99999999999999999 99999999986 3 3459998 6777654
No 184
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=98.37 E-value=7.3e-07 Score=81.69 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=52.6
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++| |++||.|++|||+++. +++++.+.++. .++.++|+ +.|++.
T Consensus 33 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~~~ 94 (96)
T 1d5g_A 33 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN--TGQVVHLL-LEKGQS 94 (96)
T ss_dssp SCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS--CCSEEEEE-EECCSC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEcCCC
Confidence 378999999999999999 9999999999999999 66899998887 47889998 677764
No 185
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*
Probab=98.37 E-value=1.3e-05 Score=85.73 Aligned_cols=184 Identities=17% Similarity=0.179 Sum_probs=101.6
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC--------CeE--EEEEEEEEcC
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN--------REE--IPVYPIYRDP 115 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~--------~~~--~~a~vv~~d~ 115 (1109)
-|-+|.|.... .....++|.+|+++ +|||+||++.. . ..+.+.. ... +....+..++
T Consensus 12 ~Pw~v~l~~~~--------~~~~~CgGtLI~~~--~VLTAAHC~~~-~--~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~ 78 (234)
T 3s9c_A 12 HPFLVALYTSA--------SSTIHCAGALINRE--WVLTAAHCDRR-N--IRIKLGMHSKNIRNEDEQIRVPRGKYFCLN 78 (234)
T ss_dssp CTTEEEEEETT--------EEEEEEEEEEEETT--EEEECGGGCCT-T--EEEEESCSSSSSCCTTCEEECEEEEECCSS
T ss_pred CCeEEEEEECC--------CCcEEEeeEEeeCC--EEEEchhhcCC-C--ceEEEeecccccccCCcceEEeeeEEEeCC
Confidence 45677776421 12456999999964 99999999973 2 3343321 111 2222333344
Q ss_pred C-------CcEEEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCC----CeEEEEEEEEecC--CCCCCCCCC
Q 001276 116 V-------HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK----VSILAGTLARLDR--DAPHYKKDG 182 (1109)
Q Consensus 116 ~-------~DlAlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~----~si~~G~vs~~~~--~~~~~~~~~ 182 (1109)
. +||||||++..-.-...+.++.|.......|+.+.+.|+..... .......+.-+.. -...|....
T Consensus 79 ~~~~~~~~~DIALl~L~~~v~~~~~v~pi~L~~~~~~~~~~~~v~GwG~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~ 158 (234)
T 3s9c_A 79 TKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRGVGSRCRIMGWGKISTTTYPDVPHCTNIFIVKHKWCEPLYPWVP 158 (234)
T ss_dssp CSSTTCGGGCCEEEEESSCCCCBTTBCCCBCCSSCCCTTCEEEEEESSCSBTTBCCSSCEEEEEEEECGGGTTTTCTTSC
T ss_pred CCCCCCCcCceEEEEECCccccCCcccccccCCCCCCCCCeEEEEeeCCCCCCCCCccccccceEecCHHHhhhcccCCC
Confidence 3 59999999854211113455666666677899999999864321 1112222222221 111121111
Q ss_pred ccccceeeEEE-----eeccCCCCCCCceecCCCcEEEEeccccCC----CCCccccchHHHHHHHHHHHhcC
Q 001276 183 YNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQERR 246 (1109)
Q Consensus 183 ~~~~~~~~iq~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falP~~~i~~~l~~l~~~~ 246 (1109)
..+ ..+-+ ....-.|.|||||+- +++++||.+.+... ...+.+.-+...+..+++..+..
T Consensus 159 ~~~---~~~Ca~~~~~~~~~C~GDSGgPl~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~~ 227 (234)
T 3s9c_A 159 ADS---RTLCAGILKGGRDTCHGDSGGPLIC-NGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIAGN 227 (234)
T ss_dssp TTS---SEEEEECTTSSCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred CCc---ceEEeecCCCCCccCCCCCCCeEEE-eCCcEEEEEEeCCCCCCCCCCcEEEEhHHhHHHHHHHHcCC
Confidence 111 12222 123456999999996 57899999877542 12345566666666666554443
No 186
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.37 E-value=1.7e-07 Score=89.61 Aligned_cols=62 Identities=23% Similarity=0.425 Sum_probs=54.9
Q ss_pred CCceEEEEEecC--CCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEEEE
Q 001276 296 ETGLLVVDSVVP--GGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGISMT 359 (1109)
Q Consensus 296 ~~G~lVv~~V~~--~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~~~~ 359 (1109)
..|++| ..|.+ ++||++ ||++||+|++|||+++.+| .++..++... |+.+.|+|.|+++..+
T Consensus 43 ~~gv~V-~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~~~~ 109 (118)
T 2yub_A 43 ATTVQV-KEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDPVPQR 109 (118)
T ss_dssp CCEEEE-EECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECSSCCC
T ss_pred CCcEEE-EEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhC-CCEEEEEEEECCEEEe
Confidence 356666 79999 999999 9999999999999999999 9999988776 8899999999987644
No 187
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=98.37 E-value=7.4e-07 Score=80.39 Aligned_cols=58 Identities=28% Similarity=0.352 Sum_probs=51.9
Q ss_pred cEEEEEecCCChhhh-cCCCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHR-YGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~-~GL~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|.+|.++|||++ +||++||.|++|||+++. +++++.+.++..+ + .++|+ +.|.+.
T Consensus 26 ~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-~-~v~l~-v~r~~~ 86 (88)
T 1kwa_A 26 HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR-G-SITFK-IVPSYR 86 (88)
T ss_dssp GEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC-E-EEEEE-EECCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC-C-cEEEE-EECCcC
Confidence 689999999999999 899999999999999999 9999999999965 4 78888 566554
No 188
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=98.36 E-value=9.1e-07 Score=80.92 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=48.2
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHH--HHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLE--TLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~--~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.++.+.+ ..+. ..|+.+.|+|.|+++
T Consensus 28 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~ 90 (95)
T 2vwr_A 28 EPGVFI-LDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ-ASGERVNLTIARPGK 90 (95)
T ss_dssp SCSEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH-HCCSEEEEEEEEESC
T ss_pred CCCEEE-EEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCEEEEEEEcCCc
Confidence 457776 79999999999 9 9999999999999998754433 3333 458999999999775
No 189
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=98.36 E-value=7.3e-07 Score=83.23 Aligned_cols=67 Identities=21% Similarity=0.286 Sum_probs=48.6
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCEEEEEEEEe
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGISMTVNLVV 364 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~v~R~g~~~~~~v~l 364 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+.. ++...+. ..++.+.|+|.|+++.....++.
T Consensus 32 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R~~~~~~~~~~p 102 (105)
T 2awx_A 32 DNSIYV-TKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALK-NTSDFVYLKVAKPTSMYISRHHH 102 (105)
T ss_dssp BCCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHH-SCCSEEEEEEECCCC--------
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEcCCCCCCccccc
Confidence 457776 79999999999 9 9999999999999997744 3334443 34889999999999877766543
No 190
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.36 E-value=3.4e-07 Score=83.71 Aligned_cols=60 Identities=23% Similarity=0.460 Sum_probs=51.7
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.++ .++..++.... +.+.|+|.|+|+.
T Consensus 29 ~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~~ 91 (94)
T 1vb7_A 29 HTPIIV-TKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLDRSSGP 91 (94)
T ss_dssp TEEEEC-CCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCCCC
T ss_pred CCCeEE-EEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECCcC
Confidence 356666 79999999999 9999999999999999997 78887776554 8899999998864
No 191
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=98.36 E-value=5.9e-07 Score=82.13 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=50.5
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++||++||.|++|||+++.++ +++.+.++. .+..+.+.++.+++.
T Consensus 30 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~--~~~~~~~~~~r~~~~ 90 (95)
T 3r68_A 30 GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK--GGDQTTLLVLDKELE 90 (95)
T ss_dssp SEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHT--TTTEEEEEEEECC--
T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHh--CCCeEEEEEECCccc
Confidence 78999999999999999999999999999999999 999999998 356677765555543
No 192
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=98.36 E-value=8.3e-07 Score=84.65 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=53.1
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
+++|..|.++|||+++| |++||.|++|||+++. +++++.+.++.. +..++|+ +.|+|+.
T Consensus 54 gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~--~~~v~l~-v~R~g~~ 115 (117)
T 2fne_A 54 PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT--KGTVTLM-VLSSDET 115 (117)
T ss_dssp EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC--CSSEEEE-EEECSCE
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEeCCcc
Confidence 78999999999999999 9999999999999999 899999999973 3459998 7788765
No 193
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=98.36 E-value=1.8e-07 Score=89.24 Aligned_cols=61 Identities=23% Similarity=0.379 Sum_probs=55.6
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC---CHHHHHHHHHhCCCCceEEEEEEEeCCeEE
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP---DLEAFVNVTKEIEHGEFVRVRTVHLNGKPR 1071 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~---~l~~f~~~l~~~~~~~~v~l~~v~rdg~~~ 1071 (1109)
.+++|..|.++|||+++| |++||.|++|||+++. +++++.+.++. .++.++|+ +.|++.++
T Consensus 49 ~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~--~~~~v~l~-v~R~~~~~ 113 (117)
T 2o2t_A 49 LGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK--AKDTVQLV-IARGSLPQ 113 (117)
T ss_dssp EEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH--CCSEEEEE-EESSCCGG
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc--CCCEEEEE-EEeCCcce
Confidence 389999999999999999 9999999999999999 99999999987 48899999 78887653
No 194
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=98.36 E-value=7.9e-07 Score=80.20 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=49.5
Q ss_pred EEEEEecCCCcccc--CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 300 LVVDSVVPGGPAHL--RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 300 lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
++|..|.++|||++ ||++||+|++|||+++. ++.++..++....+ .++|+|.|.++
T Consensus 27 ~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~ 86 (88)
T 1kwa_A 27 CIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG-SITFKIVPSYR 86 (88)
T ss_dssp EEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE-EEEEEEECCCC
T ss_pred EEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-cEEEEEECCcC
Confidence 44589999999998 69999999999999999 89999999977666 89999998764
No 195
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.36 E-value=2.2e-07 Score=86.29 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=51.2
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
.+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++. .++.+.|+ +.|++
T Consensus 30 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~r~~ 89 (102)
T 2d90_A 30 KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK--GGDQTTLL-VLDKE 89 (102)
T ss_dssp SSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHH--STTEEEEE-ECSTT
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCEEEEE-EEECC
Confidence 38999999999999999999999999999999998 5899999987 37889999 55543
No 196
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.36 E-value=2.3e-07 Score=90.10 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=59.6
Q ss_pred ccceEEEEcChhHHHHcCCChhHHHhhhcCCCCCCCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEe--CChhHHHH
Q 001276 262 TLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVI--TQFLKLET 337 (1109)
Q Consensus 262 ~lg~~~~~~~~~~~r~lGl~~~~~~~~~~~~~~~~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v--~~~~~l~~ 337 (1109)
.||+.+.......+..+|+. ...|++| ..|.++|||++ | |++||+|++|||+++ .++.++..
T Consensus 43 ~lG~~i~~~~~~~~~~~g~~-------------~~~gv~V-~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~ 108 (128)
T 1nf3_C 43 PLGFYIRDGSSVRVTPHGLE-------------KVPGIFI-SRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTD 108 (128)
T ss_dssp CCCEEEEEEEEEEEETTEEE-------------EEEEEEE-EEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHH
T ss_pred CccEEEEccccccccccccC-------------CCCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 46777764333223334433 2356666 79999999999 9 999999999999999 67788877
Q ss_pred HHhcCCCCeEEEEEEECCE
Q 001276 338 LLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 338 ~l~~~~g~~v~l~v~R~g~ 356 (1109)
++.. .++.+.|+|.|+++
T Consensus 109 ~l~~-~~~~v~l~v~r~~~ 126 (128)
T 1nf3_C 109 MMIA-NSRNLIITVRPANQ 126 (128)
T ss_dssp HHHH-TTTSEEEEEECCCC
T ss_pred HHHc-CCCeEEEEEEECCc
Confidence 7764 45679999999875
No 197
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=98.35 E-value=8.9e-07 Score=81.46 Aligned_cols=60 Identities=20% Similarity=0.298 Sum_probs=52.4
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeEE
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKPR 1071 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~~ 1071 (1109)
+++|..|.++|||+++| |++||.|++|||+++.+ ++++...++.. ++.+.|+ +.|++...
T Consensus 31 gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~-v~R~~~~~ 93 (98)
T 2opg_A 31 AIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQT--PQRVRLT-LYRDEAPY 93 (98)
T ss_dssp SEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC--CSEEEEE-EEECSSCC
T ss_pred CEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCeEEEE-EEcCCCCC
Confidence 89999999999999999 99999999999999988 57888888763 4789998 67887643
No 198
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=98.35 E-value=6e-07 Score=81.04 Aligned_cols=58 Identities=19% Similarity=0.362 Sum_probs=48.0
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++.++ .++...+.. .|+.+.|+|.|+++
T Consensus 27 ~~v~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 87 (89)
T 2q3g_A 27 VPLSI-SRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRA-CGERLSLGLSRAIT 87 (89)
T ss_dssp EEEEE-EEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHT-CTTEEEEEEEEECC
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCEEEEEEEeCCC
Confidence 56665 79999999999 9999999999999999954 555555544 48899999999775
No 199
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2
Probab=98.35 E-value=4.6e-06 Score=88.66 Aligned_cols=153 Identities=14% Similarity=0.216 Sum_probs=88.4
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCC-eEEEEEecC---------CeEEEEEEEEEc-
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGP-VVAEAMFVN---------REEIPVYPIYRD- 114 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~-~~~~v~~~~---------~~~~~a~vv~~d- 114 (1109)
-|-+|.|.... ......++|.+|+++ +|||+||++.... ..+.+.+.. ...+...-+..+
T Consensus 12 ~Pw~v~l~~~~-------~~~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h~ 82 (221)
T 1fuj_A 12 RPYMASLQMRG-------NPGSHFCGGTLIHPS--FVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHFSVAQVFLNN 82 (221)
T ss_dssp CTTEEEEEETT-------BTTCCCEEEEEEETT--EEEECGGGGSSSCGGGEEEEESCSBTTSCCTTCEEEEEEEEEECC
T ss_pred cCCEEEEEEec-------CCCCEEEEEEEecCC--EEEEchHhcCcCCCCceEEEEeeeeccCCCCceEEEEEEEEEeCC
Confidence 36677776531 112467999999964 9999999998532 245565542 234555444443
Q ss_pred -----CCCcEEEEEEcCCCcccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecCCCCCCCCCC
Q 001276 115 -----PVHDFGFFRYDPSAIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRDAPHYKKDG 182 (1109)
Q Consensus 115 -----~~~DlAlLk~~~~~~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~~~~~~~~~ 182 (1109)
..+||||||++........+.++.|. ...+..|+.+.+.|+..... .......+..+...- .
T Consensus 83 y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~C----~-- 156 (221)
T 1fuj_A 83 YDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFC----R-- 156 (221)
T ss_dssp CBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSCSSSCBCSBCEEEEEEEECTTC----C--
T ss_pred CCCCCCcccEEEEEeCCccccCCcceeeECCCCcCCCCCCCEEEEEEeCCCCCCCCHHHHhhcccceEEeeec----C--
Confidence 34799999998542111123344443 33457899999999864321 112222222221110 0
Q ss_pred ccccceeeEEE-----eeccCCCCCCCceecCCCcEEEEecc
Q 001276 183 YNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAG 219 (1109)
Q Consensus 183 ~~~~~~~~iq~-----~a~~~~G~SGgPv~n~~G~vVGi~~~ 219 (1109)
.. .+-+ ...+-.|.|||||+. +|.++||.+.
T Consensus 157 --~~---~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~s~ 192 (221)
T 1fuj_A 157 --PH---NICTFVPRRKAGICFGDSGGPLIC-DGIIQGIDSF 192 (221)
T ss_dssp --TT---EEEEECSSSSCBCCTTCTTCEEEE-TTEEEEEEEE
T ss_pred --Cc---eeeeccCCCCCCCCCCCCCCeeEE-CCEEeEEEEE
Confidence 00 1111 224567999999997 6899999986
No 200
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.35 E-value=1e-06 Score=84.99 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=55.9
Q ss_pred ceEEEEeecCCCHHhhhccCCCEEEEECCEEcCChhHHHHHHHhccCCCCCCCeEEEEEEeCCEEEEEEEeeee
Q 001276 900 QVLRVKGCLAGSKAENMLEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREIELQVGTDV 973 (1109)
Q Consensus 900 ~~~~V~~V~~~spA~~aL~~GDiIlsVnG~~V~~~~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~l~v~l~~ 973 (1109)
.+++|..|.++|||+++|++||+|++|||++|.+|.++...+.....+ +.+.++| |+|+ +++++..
T Consensus 25 ~gv~V~~V~~~spA~~aL~~GD~Il~InG~~v~~~~dl~~~l~~~~~g----~~v~l~V-R~g~---~~v~l~~ 90 (125)
T 2hga_A 25 DGVQIDSVVPGSPASKVLTPGLVIESINGMPTSNLTTYSAALKTISVG----EVINITT-DQGT---FHLKTGR 90 (125)
T ss_dssp CCEEEEEECSSSGGGGTSCTTCEEEEETTEECSSHHHHHHHHTTCCTT----CEEEEEE-TTEE---EEEECCB
T ss_pred CceEEEEECCCChHHHhcCCCCEEEEECCEEcCCHHHHHHHHHhcCCC----CEEEEEE-ECCE---EEEEEec
Confidence 578899999999999889999999999999999999999988544554 7899999 9987 5555443
No 201
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.35 E-value=8e-07 Score=81.64 Aligned_cols=52 Identities=31% Similarity=0.475 Sum_probs=48.2
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEE
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVR 1062 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~ 1062 (1109)
+++|++|.++|||+++| |++||.|++|||+++.+ ++++.+.++.. ++.++|+
T Consensus 37 gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~--~~~v~L~ 91 (97)
T 2ejy_A 37 SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET--KGMISLK 91 (97)
T ss_dssp CEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC--CEEEEEE
T ss_pred CEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE
Confidence 78999999999999999 99999999999999996 99999999983 5678887
No 202
>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A
Probab=98.35 E-value=9.2e-06 Score=86.72 Aligned_cols=178 Identities=15% Similarity=0.201 Sum_probs=98.9
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC-CeEEEEEecC---------CeEEEEEEEEEcC
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFVN---------REEIPVYPIYRDP 115 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~-~~~~~v~~~~---------~~~~~a~vv~~d~ 115 (1109)
-|-+|.|... ....++|.+|+++ +|||+||++... ...+.|.+.. .+.+.+.-+..+|
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp 79 (228)
T 2xw9_A 12 RPYMASVQLN----------GAHLCGGVLVAEQ--WVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHP 79 (228)
T ss_dssp CTTEEEEEET----------TEEEEEEEEEETT--EEEECGGGGSSCTTCCEEEEESCSBSSSCCTTCEEEEEEEEEECT
T ss_pred CCcEEEEEEC----------CCeEEEEEEEeCC--EEEEcHHhCCCCCCCceEEEEcccccCCCCCcceEEEEEEEEeCC
Confidence 3567777642 2467999999964 999999999732 2356666542 2456666666666
Q ss_pred C-------CcEEEEEEcCCC-cccccccCCCCCC--ccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecC--CCCCC
Q 001276 116 V-------HDFGFFRYDPSA-IQFLNYDEIPLAP--EAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR--DAPHY 178 (1109)
Q Consensus 116 ~-------~DlAlLk~~~~~-~~~~~l~~l~l~~--~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~--~~~~~ 178 (1109)
. +||||||++..- +. ..+.++.|.. ..+..|+.+.+.|+..... .......+.-+.. -...|
T Consensus 80 ~y~~~~~~~DIAll~L~~~~~~~-~~v~pi~l~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~ 158 (228)
T 2xw9_A 80 DSQPDTIDHDLLLLQLSEKATLG-PAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRT 158 (228)
T ss_dssp TCCTTCCTTCCEEEEESSCCCCB-TTBCCCCBCCSCCCCCTTC-CEEEESSCCSTTCCCCSBCEEEECCEECHHHHTSTT
T ss_pred CCCCCCCCCcEEEEEeCCCcccC-CCeeecccCCcccCCCCCCEEEEEEecccCCCCCCCchheEEEEEEcChhHhcCcc
Confidence 4 699999998542 11 1233444433 5567899999999864321 1122212221111 00011
Q ss_pred CC-CCccccceeeEEE---eeccCCCCCCCceecCCCcEEEEeccccCC----CCCccccchHHHHHHHH
Q 001276 179 KK-DGYNDFNTFYMQA---ASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALR 240 (1109)
Q Consensus 179 ~~-~~~~~~~~~~iq~---~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falP~~~i~~~l~ 240 (1109)
.. ....+ .++=+ ....-.|.|||||+- +|.++||.+.+... ...+.+..+...+..++
T Consensus 159 ~~~~~~~~---~~~Ca~~~~~~~C~GDsGgPL~~-~~~l~Gi~s~g~~~C~~~~~p~vyt~V~~~~~WI~ 224 (228)
T 2xw9_A 159 HHDGAITE---RLMCAESNRRDSCKGDAGGPLVC-GGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWID 224 (228)
T ss_dssp TTTTCCCT---TEEEECCSSCBCCTTCTTCEEEE-TTEEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHH
T ss_pred ccCCcccC---CEEecCCCCCccCCCCCcccEEE-CCEEEEEEeecCCcCCCCCCCcEEEEHHHHHHHHH
Confidence 10 01111 11222 123456999999996 67999999876521 12233444444444443
No 203
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2
Probab=98.35 E-value=1.4e-05 Score=84.88 Aligned_cols=180 Identities=17% Similarity=0.219 Sum_probs=101.0
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec---------CCeEEEEEEEEEcCC
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV 116 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~---------~~~~~~a~vv~~d~~ 116 (1109)
-|-+|.|.... .......++|.+|++ .+|||+||++.. ...+.+. ....+..+-+..+|.
T Consensus 12 ~Pw~v~l~~~~------~~~~~~~CgGtLI~~--~~VLTAAhC~~~---~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~ 80 (224)
T 3rp2_A 12 RPYMAHLDIVT------EKGLRVICGGFLISR--QFVLTAAHCKGR---EITVILGAHDVRKRESTQQKIKVEKQIIHES 80 (224)
T ss_dssp CTTEEEEEEEC------TTSCEEEEEEEESSS--SEEEECGGGCCS---EEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred CCcEEEEEEec------CCCcEEEEEeEEeeC--CEEEEchhcCCC---CcEEEEeccccCcCCCCcEEEEEEEEEECCC
Confidence 46678887642 112256799999996 499999999863 4555543 224566676777776
Q ss_pred -------CcEEEEEEcCCCcccccccCCCC--CCccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecCCC-CCCCCC
Q 001276 117 -------HDFGFFRYDPSAIQFLNYDEIPL--APEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRDA-PHYKKD 181 (1109)
Q Consensus 117 -------~DlAlLk~~~~~~~~~~l~~l~l--~~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~~-~~~~~~ 181 (1109)
+||||||++..-.-...+.++.| ....+..|+.+.+.|+..... .......+.-+.... ..+...
T Consensus 81 y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~ 160 (224)
T 3rp2_A 81 YNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYY 160 (224)
T ss_dssp CCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSEEETTEEECSBCEEEEEEEECGGGTTTTTCC
T ss_pred ccCCCCCccEEEEEcCCCcccCCcccceecCCcccCCCCCCEEEEEeCCCCCCCCCCCceeeEeeeeecChHHhcccccc
Confidence 69999999754210012233333 344567899999999853211 112222222222110 001110
Q ss_pred CccccceeeEEEe-----eccCCCCCCCceecCCCcEEEEeccccCCC-CCccccchHHHHHHHHH
Q 001276 182 GYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSKSSS-ASAFFLPLERVVRALRF 241 (1109)
Q Consensus 182 ~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~~-~~~falP~~~i~~~l~~ 241 (1109)
.. + ..+-+. ...-.|.|||||+- ++.++||.+.+.... ..+.+..+...+..+++
T Consensus 161 ~~-~---~~~Ca~~~~~~~~~C~GDsGgPl~~-~~~l~Gi~S~g~~c~~~p~vyt~v~~y~~WI~~ 221 (224)
T 3rp2_A 161 EY-K---FQVCVGSPTTLRAAFMGDSGGPLLC-AGVAHGIVSYGHPDAKPPAIFTRVSTYVPWINA 221 (224)
T ss_dssp CT-T---TEEEECCTTSCCBCCTTTTTCEEEE-TTEEEEEEEECCTTCCSCEEEEEHHHHHHHHHH
T ss_pred Cc-C---CEEEecCCCCCCeeccCCCCCeEEE-cceeeEEEEECCCCCCCCcEEEEHHHhHHHHHH
Confidence 01 1 112111 23345999999996 679999998765432 23444555555555443
No 204
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=98.35 E-value=4.1e-08 Score=95.33 Aligned_cols=68 Identities=21% Similarity=0.167 Sum_probs=60.7
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeEEE--EEEeeC
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKPRV--LTLKQD 1078 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~--i~lk~~ 1078 (1109)
+++|..|.++|||+++||++||.|++|||+++.+ ++++.++++.. .++.+.|. +.|+|..+. +++++.
T Consensus 34 gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~~~~l~-v~R~g~~~~~~~~l~~~ 105 (128)
T 2kjd_A 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLLV-VDRETDEFFKKCRVIPS 105 (128)
T ss_dssp SEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTT-CSEEEEEE-ECHHHHHHHHHHTCCCC
T ss_pred CEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCCEEEEE-EEeCCcceEEEEEEEec
Confidence 7999999999999999999999999999999999 99999999986 58888888 789888766 555554
No 205
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.35 E-value=3.4e-07 Score=85.22 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=53.5
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++..+.++.++|+ +.|++.
T Consensus 34 ~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~~~ 97 (103)
T 1uep_A 34 QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLT-VRRKVL 97 (103)
T ss_dssp SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEE-EEEECC
T ss_pred CCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEE-EEeCCC
Confidence 378999999999999999 99999999999999965 89999999885447889998 677654
No 206
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=98.35 E-value=5.9e-07 Score=82.88 Aligned_cols=57 Identities=28% Similarity=0.323 Sum_probs=50.0
Q ss_pred ceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 298 GLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 298 G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
|++| ..|.++|||++ ||++||+|++|||+++. ++.++..++. ..|+.+.|++.|+++
T Consensus 35 g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 94 (99)
T 3khf_A 35 HHVV-WSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLL-KSGNKISLRTTALEN 94 (99)
T ss_dssp EEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEECSCS
T ss_pred CeEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh-cCCCEEEEEEEECCC
Confidence 5566 79999999999 99999999999999999 7777777776 578999999999765
No 207
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.2e-06 Score=79.42 Aligned_cols=56 Identities=27% Similarity=0.449 Sum_probs=49.0
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEe-CChhHHHHHHhcCCCCeEEEEEEEC
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVI-TQFLKLETLLDDGVDKNIELLIERG 354 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v-~~~~~l~~~l~~~~g~~v~l~v~R~ 354 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++ .++.++..++... ++.+.|+|.|.
T Consensus 29 ~~v~V-~~V~~~spA~~ag~L~~GD~I~~ing~~v~~~~~~~~~~l~~~-~~~v~l~v~~~ 87 (91)
T 2e7k_A 29 GELVI-ARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRNA-SGSVILKILSG 87 (91)
T ss_dssp SSEEE-EEECSSSHHHHHCCCCTTCEEEEETTEECTTCHHHHHHHHHTC-CSSBCEEEECC
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 56666 79999999999 7 999999999999999 9999999888764 67889998874
No 208
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.35 E-value=4.4e-07 Score=87.44 Aligned_cols=58 Identities=10% Similarity=0.206 Sum_probs=54.1
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeC
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLN 1067 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rd 1067 (1109)
+++|..|.++|||+++| |++||.|++|||+++. +++++.+.++..+.++.++|+ +.|+
T Consensus 50 ~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~-V~R~ 110 (126)
T 1wif_A 50 YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK-AYRG 110 (126)
T ss_dssp EEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEE-EESS
T ss_pred cEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEE-EEEC
Confidence 68999999999999999 9999999999999995 899999999987779999999 6776
No 209
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.34 E-value=1.5e-06 Score=78.82 Aligned_cols=58 Identities=31% Similarity=0.479 Sum_probs=47.6
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHH-HhcCCCCeEEEEEEEC
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETL-LDDGVDKNIELLIERG 354 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~-l~~~~g~~v~l~v~R~ 354 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.++.+.... +....|+.+.|+|.|+
T Consensus 31 ~~gv~V-~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~ 90 (91)
T 1m5z_A 31 EKGVYV-KNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN 90 (91)
T ss_dssp SSCEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence 367776 79999999999 9999999999999999998654432 2335688999999886
No 210
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.34 E-value=3.4e-07 Score=84.87 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=51.8
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++||++||.|++|||+++.++.+ .+++..+..++.+.|+ +.|+|+
T Consensus 35 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~-~~~~~~~~~~~~v~l~-v~R~g~ 94 (101)
T 1uez_A 35 VGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTH-AEAVKALKGSKKLVLS-VYSAGR 94 (101)
T ss_dssp CCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCH-HHHHHHSSSSSSCCEE-ECCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCH-HHHHHhhcCCCeEEEE-EEECCc
Confidence 38999999999999999999999999999999999988 4566665567788888 677765
No 211
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=98.34 E-value=1.2e-06 Score=81.96 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=51.8
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++...++. .+..++|+ +.|++.
T Consensus 32 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~-v~R~~~ 93 (106)
T 4amh_A 32 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKN--TSDFVYLK-VAKPGS 93 (106)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHS--CCSEEEEE-EECCSS
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEE-EEeCCC
Confidence 489999999999999999 99999999999999955 7888888876 36689999 788764
No 212
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.34 E-value=6.3e-07 Score=83.57 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=52.2
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++||++||.|++|||+++.+ ++++.++++. ++.++|+ +.|+..
T Consensus 41 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~---~~~v~l~-v~r~~~ 100 (104)
T 1wi2_A 41 LGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT---AREISMR-VRFFSG 100 (104)
T ss_dssp CCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH---SSSEEEE-EECCCC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC---CCEEEEE-EEECCC
Confidence 37899999999999999999999999999999999 9999999997 6778888 666543
No 213
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.34 E-value=9.9e-07 Score=82.20 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=50.7
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++.. ++.+.|+|.|+..
T Consensus 40 ~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~--~~~v~l~v~r~~~ 100 (104)
T 1wi2_A 40 QLGIFI-SKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT--AREISMRVRFFSG 100 (104)
T ss_dssp CCCCEE-EEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH--SSSEEEEEECCCC
T ss_pred CCCEEE-EEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCEEEEEEEECCC
Confidence 367777 79999999999 999999999999999999 8888888765 7889999988653
No 214
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=98.34 E-value=1.2e-06 Score=79.55 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=50.1
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++. .+..+.|+ +.|++.
T Consensus 25 ~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~--~~~~v~l~-v~R~~~ 84 (91)
T 2f5y_A 25 PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS--CPSEIILL-VWRMVP 84 (91)
T ss_dssp SCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT--CSSEEEEE-EEECC-
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCC
Confidence 6799999999999999999999999999999995 5889998887 35578888 677664
No 215
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Probab=98.34 E-value=1.2e-05 Score=86.64 Aligned_cols=160 Identities=16% Similarity=0.203 Sum_probs=93.7
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC--CeEEEEEecC---------CeEEEEEEEEEc
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFVN---------REEIPVYPIYRD 114 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~--~~~~~v~~~~---------~~~~~a~vv~~d 114 (1109)
-|-+|.|... ....++|.+|+++ +|||+||++... .....|++.. ...+..+-+..+
T Consensus 14 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h 81 (240)
T 1mza_A 14 RPFMASIQYG----------GHHVCGGVLIDPQ--WVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIPF 81 (240)
T ss_dssp STTEEEEEET----------TEEEEEEEEEETT--EEEECGGGSCTTCSCSCEEEEESCSBSSSCCTTCEEEEEEEEEEC
T ss_pred CCeEEEEeeC----------CceEEEEEEecCC--EEEECHHhCCCCCCCCCeEEEeCceecCCCCCceEEEEEEEEEeC
Confidence 3667877642 2467999999964 999999998632 3445565532 245666656666
Q ss_pred CC-------CcEEEEEEcCCCcccccccCCCCCC-ccCCCCCEEEEEecCCCC------CCeEEEEEEEEecC---C-CC
Q 001276 115 PV-------HDFGFFRYDPSAIQFLNYDEIPLAP-EAACVGLEIRVVGNDSGE------KVSILAGTLARLDR---D-AP 176 (1109)
Q Consensus 115 ~~-------~DlAlLk~~~~~~~~~~l~~l~l~~-~~~~~G~~V~~iG~p~g~------~~si~~G~vs~~~~---~-~~ 176 (1109)
|. +||||||++..-.....+.++.|.. ..+..|+.+.+.|+.... ...+....+.-+.. . ..
T Consensus 82 p~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~ 161 (240)
T 1mza_A 82 SRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQS 161 (240)
T ss_dssp CCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHHHTSTT
T ss_pred CCccCCCCCceEEEEEeCCCcccCCceeeeecCCcccCCCCCEEEEEeCCcCCCCCCCccccceEeEEEEeCHHHcCCcc
Confidence 53 7999999985421111234445544 566889999999976322 11222222322221 1 01
Q ss_pred CCCCC-CccccceeeEEEe-----eccCCCCCCCceecCCCcEEEEecccc
Q 001276 177 HYKKD-GYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 177 ~~~~~-~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
.|... ...+ .+|=+. ...-.|.|||||+- +|.++||.+.+.
T Consensus 162 ~~~~~~~~~~---~~~Ca~~~~~~~~~C~GDSGGPL~~-~~~l~Gi~S~g~ 208 (240)
T 1mza_A 162 YYNGDPFITK---DMVCAGDAKGQKDSCKGDAGGPLIC-KGVFHAIVSGGH 208 (240)
T ss_dssp TTTTTTCCCT---TEEEEECTTSCCCCCTTCTTCEEEE-TTEEEEEECSSC
T ss_pred eeCCCCcCCC---CeEeecCCCCCCccCCCCCCCeeEE-CCEEEEEEEECC
Confidence 12111 0111 112221 23457999999996 679999998764
No 216
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=98.33 E-value=1.2e-06 Score=79.34 Aligned_cols=60 Identities=27% Similarity=0.363 Sum_probs=50.4
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++..+ ++ +.+.++.|++.
T Consensus 27 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~-~~~~~~~r~~~ 88 (91)
T 1g9o_A 27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL-NA-VRLLVVDPETD 88 (91)
T ss_dssp SSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCS-SE-EEEEEECCCCS
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-Cc-EEEEEEcCCcc
Confidence 38999999999999999999999999999999998 789999998742 44 55544677664
No 217
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=98.33 E-value=1.4e-06 Score=80.09 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=50.4
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++. ..|+.+.|+|.|+++.
T Consensus 30 ~~~~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R~~~~ 92 (97)
T 1n7e_A 30 DPIII-SSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTLKIKKQTDA 92 (97)
T ss_dssp SCCEE-EEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEECCCCC
T ss_pred CCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeCCCC
Confidence 56666 79999999999 9 99999999999999975 567776666 5788999999998764
No 218
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=98.32 E-value=1.3e-06 Score=82.15 Aligned_cols=59 Identities=17% Similarity=0.086 Sum_probs=49.1
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
.+++| ..|.++|||++ ||++||+|++|||+++. ++.++..++....++.++|+|.|...
T Consensus 44 ~~v~V-~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~~ 105 (109)
T 2vsv_A 44 APVQV-HFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLLD 105 (109)
T ss_dssp SSCEE-EEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC-
T ss_pred CCeEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECCC
Confidence 45555 79999999999 99999999999999999 55888888766656669999987543
No 219
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=98.32 E-value=4.4e-07 Score=84.86 Aligned_cols=60 Identities=25% Similarity=0.410 Sum_probs=51.2
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.++. ++..++. ..|+.+.|+|.|+++.
T Consensus 25 ~~g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~~ 87 (106)
T 3ngh_A 25 TDGHLI-RVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVR-KSGNSVTLLVLDGDSY 87 (106)
T ss_dssp CCSCEE-ECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHH-HTTTEEEEEEECHHHH
T ss_pred CCCEEE-EEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCEEEEEEEECCee
Confidence 467777 69999999999 99999999999999999987 6666665 5688999999997654
No 220
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=98.32 E-value=1.2e-06 Score=80.36 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=52.9
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++. .++.+.|+ +.|++..
T Consensus 30 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~~~~ 92 (97)
T 1n7e_A 30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM--AGETVTLK-IKKQTDA 92 (97)
T ss_dssp SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHT--CCSEEEEE-EECCCCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCCC
Confidence 378999999999999999 99999999999999974 6899999984 58889998 6787754
No 221
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=98.32 E-value=1e-06 Score=85.83 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=73.5
Q ss_pred CeEEEEEEeCCEEEEEEEeeeecCCCC--cceEEeecCccccCCchhhhhccCCCCCCCcEEEEEecCCChhhhcC-CCC
Q 001276 952 GKLDITIFRQGREIELQVGTDVRDGNG--TTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYG-LYA 1028 (1109)
Q Consensus 952 ~~v~l~V~R~g~~~~l~v~l~~~~~~~--t~~~~~~~G~~~~~p~~~~r~~~~lp~~~~gV~V~~v~~gSPA~~~G-L~~ 1028 (1109)
..+.....++++.+...+.+......- ....-..+|+.+..-. ..+....+++|..|.++|||+++| |++
T Consensus 14 ~p~~~~~~~~~~~~i~~v~l~~~~~~~~i~k~~~~~lG~~i~gg~-------~~~~~~~gv~V~~V~~gspA~~aG~L~~ 86 (131)
T 1wfg_A 14 HPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGK-------MTESGRLCAFITKVKKGSLADTVGHLRP 86 (131)
T ss_dssp CSCEEEECSSSSEEEEEEEEECSCTTSCCCSCSCTTTTEEEEEEE-------ECSSSCEEEEEEEECTTSHHHHTSCCCT
T ss_pred CCCcccCCCCCCceeeEEEEeccceeEEEecCCCCCCCEEEecCc-------cCCCCCCCEEEEEECCCChHHHcCCCCC
Confidence 456666777777666666554331000 0001122454442100 011112379999999999999999 999
Q ss_pred CCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1029 LQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1029 gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
||.|++|||+++.+ ++++.+++++...++.++|+ +.|++
T Consensus 87 GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~g 127 (131)
T 1wfg_A 87 GDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELV-VSRSG 127 (131)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEE-EEEEC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE-EEcCC
Confidence 99999999999975 59999999997668999998 67765
No 222
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.32 E-value=3.6e-07 Score=88.55 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=61.6
Q ss_pred cEEEEEecCCChhhhcCC-CCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEee
Q 001276 1009 GVYVARWCHGSPVHRYGL-YALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQ 1077 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL-~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk~ 1077 (1109)
+++|..|.++|||+++|| ++||.|++|||+++.+ ++++.+.++.. .++.+.|+ +.|+|..+.+++++
T Consensus 34 ~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~g~~v~l~-v~R~g~~~~~~~~~ 103 (127)
T 1b8q_A 34 PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI-ASETHVVL-ILRGPEGFTTHLET 103 (127)
T ss_dssp CEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSC-CSSCEEEE-EECCCCSEEECCCC
T ss_pred CEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCCeEEEE-EEeCCceEEEEEEE
Confidence 789999999999999999 9999999999999999 99999999984 58899999 78999988877775
No 223
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=98.32 E-value=9.2e-07 Score=83.07 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=48.5
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEE
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTV 1064 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v 1064 (1109)
+++|..|.++|||+++||++||.|++|||+++. +++++.+.++.. .++.+.|+++
T Consensus 45 ~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~-~~~~v~l~V~ 101 (109)
T 2vsv_A 45 PVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSF-GEDEIEMKVV 101 (109)
T ss_dssp SCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTT-TTSCEEEEEE
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCCeEEEEEE
Confidence 568999999999999999999999999999999 669999999874 3666888843
No 224
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=98.32 E-value=1.3e-06 Score=81.11 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=53.6
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ +.++...++. .++.++|. +.|++..
T Consensus 34 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~~~~ 96 (102)
T 2i1n_A 34 PGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE--AGPVVRLV-VRRRQPP 96 (102)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH--SCSEEEEE-EEEECCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCCC
Confidence 489999999999999999 99999999999999977 7888888887 47889998 6777764
No 225
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}
Probab=98.32 E-value=6.7e-06 Score=87.97 Aligned_cols=188 Identities=14% Similarity=0.189 Sum_probs=103.7
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC-CeEEEEEecC------CeEEEEEEEEEc----
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFVN------REEIPVYPIYRD---- 114 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~-~~~~~v~~~~------~~~~~a~vv~~d---- 114 (1109)
-|-+|.|... ....++|.+|+++ +|||+||++... ...+.+.+.. +..+..+-+..+
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~h~y~~ 79 (235)
T 3h7t_A 12 EPWAVGVLVD----------EKPFCGGSILTAN--FVITAAQCVDGTKPSDISIHYGSSYRTTKGTSVMAKKIYIVRYHP 79 (235)
T ss_dssp STTEEEEEET----------TSCCEEEEESSSS--EEEECHHHHTTCCGGGEEEEESCSBSSSSSEEEEEEEEEECSCBT
T ss_pred CCcEEEEecC----------CCceEeEEEeeCC--EEEECHHHCCCCCCCeeEEEcCccccccCCceeeeeeEEeeecCC
Confidence 3667777652 2457999999964 999999999532 3456666542 244555444433
Q ss_pred --CCCcEEEEEEcCCC-cccccccCCCCCCc--cCCCCCEEEEEecCCCC------CCeEEEEEEEEecCC--CCCCCCC
Q 001276 115 --PVHDFGFFRYDPSA-IQFLNYDEIPLAPE--AACVGLEIRVVGNDSGE------KVSILAGTLARLDRD--APHYKKD 181 (1109)
Q Consensus 115 --~~~DlAlLk~~~~~-~~~~~l~~l~l~~~--~~~~G~~V~~iG~p~g~------~~si~~G~vs~~~~~--~~~~~~~ 181 (1109)
..+|||||+++..- +....+.++.|... .+..|+.+++.|+.... ........+.-+... ...|...
T Consensus 80 ~~~~~DiAll~L~~~v~~~~~~v~pi~Lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~ 159 (235)
T 3h7t_A 80 LTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQI 159 (235)
T ss_dssp TTTBTCCEEEEESSCCCCCSSSCCCCBCCCTTCCCCTTCEEEEEECCCSSTTCCCCCSBCEEEEEEEECHHHHHHHHHTT
T ss_pred CCCCCCeEEEEeccccccCCccccceecCccccCCCCCCeEEEEecCCCCCCCCchhHHHhhCCCceeCHHHHHHHhhhc
Confidence 23799999998532 11112334444433 37899999999986432 112222222222210 0001000
Q ss_pred Ccccc-ceeeEEE-----eeccCCCCCCCceecCCCcEEEEeccccCCC--CCccccchHHHHHHHHHHHhcC
Q 001276 182 GYNDF-NTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSSS--ASAFFLPLERVVRALRFLQERR 246 (1109)
Q Consensus 182 ~~~~~-~~~~iq~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~~--~~~falP~~~i~~~l~~l~~~~ 246 (1109)
....+ ....|=+ ....-.|.|||||+. +|+++||.+.+..-. ..+.+..+...+..+++..+..
T Consensus 160 ~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~-~~~l~Gi~S~g~~C~~~~p~vyt~v~~~~~WI~~~i~~~ 231 (235)
T 3h7t_A 160 EADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQ-NGTLVGVASYISSMPSEFPSVFLRVGYYVLDIKDIISGK 231 (235)
T ss_dssp TCGGGCSTTEEEECBTTTTBBCCTTCTTCEEEE-TTEEEEEECCCTTCCTTSCEEEEEGGGGHHHHHHHHTTC
T ss_pred ccCccccCCeEecCCCCCCCccccCCCCCceee-CCeEEEEEEecCCCCCCCCceEEEHHHHHHHHHHHHhCC
Confidence 00000 0111222 223446999999996 788999998764322 2344556666666666555443
No 226
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.32 E-value=4.4e-07 Score=80.78 Aligned_cols=57 Identities=21% Similarity=0.407 Sum_probs=47.5
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEEC
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERG 354 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~ 354 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.++ .++..++.. .++.++|+|.|+
T Consensus 22 ~~~~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 81 (83)
T 2kv8_A 22 QAPCVL-SCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGK-CSGVLHMVIAEG 81 (83)
T ss_dssp SSSCBC-CBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTT-CSSCEEEEEECC
T ss_pred CCCeEE-EEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcC
Confidence 346665 79999999999 9999999999999999998 666666643 457799999886
No 227
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=98.31 E-value=1.4e-06 Score=79.97 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=49.6
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHL 1066 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~r 1066 (1109)
+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++.. +..++|+ +.+
T Consensus 38 ~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~-v~~ 94 (96)
T 2ego_A 38 VTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS--GNVLRLE-TLY 94 (96)
T ss_dssp EEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT--TTEEEEE-EEC
T ss_pred CeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCeEEEE-EEE
Confidence 8899999999999999999999999999999999 69999999985 4478888 444
No 228
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.31 E-value=3.5e-07 Score=85.15 Aligned_cols=59 Identities=22% Similarity=0.388 Sum_probs=52.5
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
.+++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++... ++.+.|+|.|+++.
T Consensus 29 ~~~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~~ 90 (103)
T 1v5l_A 29 QPLVI-TRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAETR 90 (103)
T ss_dssp EEEEC-SCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTTT
T ss_pred CCeEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCeE
Confidence 35555 79999999999 999999999999999999 99999888766 89999999998864
No 229
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=98.31 E-value=6.6e-07 Score=86.26 Aligned_cols=60 Identities=27% Similarity=0.370 Sum_probs=52.7
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhc-CCCCeEEEEEEECCEE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDD-GVDKNIELLIERGGIS 357 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~-~~g~~v~l~v~R~g~~ 357 (1109)
.|++| ..|.|+|||++ ||++||+|++|||+++.++ .++...+.. ..|+.++|+|.|+++.
T Consensus 51 ~gv~V-~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~ 114 (124)
T 3tsv_A 51 VGIFV-AGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDV 114 (124)
T ss_dssp SCEEE-EEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHHH
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCch
Confidence 67776 79999999999 9999999999999999998 788887754 7889999999998653
No 230
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=98.31 E-value=1e-06 Score=82.59 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=53.7
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++. .++.++|+ +.|++..
T Consensus 44 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~~~~ 106 (108)
T 2jre_A 44 TGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN--AGNPVRLL-LIRRLPL 106 (108)
T ss_dssp CCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH--HCSEEEEE-EEECCCC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCcC
Confidence 388999999999999999 99999999999999998 6899999987 47889998 6777753
No 231
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=98.31 E-value=1.5e-06 Score=79.13 Aligned_cols=58 Identities=21% Similarity=0.370 Sum_probs=50.5
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ +.++...++.. +..++|+ +.|+|
T Consensus 33 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~-v~R~g 93 (94)
T 2fe5_A 33 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT--SDMVYLK-VAKPG 93 (94)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC--CSEEEEE-EECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEcCC
Confidence 489999999999999999 99999999999999988 57888888763 4588888 67765
No 232
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.31 E-value=1e-06 Score=79.88 Aligned_cols=57 Identities=26% Similarity=0.384 Sum_probs=47.9
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHH--HHHHHHHhCCCCceEEEEEEEeC
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLE--AFVNVTKEIEHGEFVRVRTVHLN 1067 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~--~f~~~l~~~~~~~~v~l~~v~rd 1067 (1109)
.+++|..|.++|||+++||++||.|++|||+++.++. ++...+++ .++.+.|. +.|+
T Consensus 32 ~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~ 90 (91)
T 1m5z_A 32 KGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAE--SGNKLDLV-ISRN 90 (91)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT--STTEEEEE-EEEC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCEEEEE-EEeC
Confidence 3899999999999999999999999999999999974 45555664 47888888 5664
No 233
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=98.31 E-value=8.9e-07 Score=82.91 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=53.3
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+ +||++||.|++|||+++.++.++..++...+.++.++|+ +.|++..
T Consensus 39 ~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~-v~R~~~~ 99 (107)
T 2h2b_A 39 TSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKIT-IRRKKGG 99 (107)
T ss_dssp CCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE-EEEESCC
T ss_pred CCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhhCCCCEEEEE-EEECCCC
Confidence 489999999999999 999999999999999999998887776655568899998 6777754
No 234
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=6.9e-07 Score=81.62 Aligned_cols=58 Identities=21% Similarity=0.143 Sum_probs=50.7
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++||++||.|++|||+++.++ .++...++. .++.+.|+ +.|++.
T Consensus 33 ~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~g~ 92 (94)
T 2eeg_A 33 PLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG--CHDHLTLS-VSSGPS 92 (94)
T ss_dssp CCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHT--CCSCEEEE-EECCSS
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCC
Confidence 67999999999999999999999999999999995 677777776 47789998 677764
No 235
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=98.30 E-value=6e-07 Score=84.27 Aligned_cols=60 Identities=28% Similarity=0.459 Sum_probs=51.2
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++.. .|+.+.|+|.|+++.
T Consensus 43 ~~gv~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 106 (108)
T 2jre_A 43 ATGIYV-KSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN-AGNPVRLLLIRRLPL 106 (108)
T ss_dssp CCCCEE-EEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH-HCSEEEEEEEECCCC
T ss_pred CCCEEE-EEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCcC
Confidence 457777 79999999999 9 99999999999999998 4666666655 788999999998864
No 236
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=98.30 E-value=1.3e-06 Score=81.83 Aligned_cols=68 Identities=22% Similarity=0.368 Sum_probs=52.3
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE-EEEEEEEee
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI-SMTVNLVVQ 365 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~-~~~~~v~l~ 365 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+ +.++...+. ..++.+.|+|.|+++ ...+++++.
T Consensus 31 ~~gv~V-~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~-~~~~~v~l~v~R~~~~~~~~~v~l~ 103 (106)
T 4amh_A 31 DNSIYV-TKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALK-NTSDFVYLKVAKPGSGEKIMEIKLI 103 (106)
T ss_dssp BCCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHH-SCCSEEEEEEECCSSSCSEEEEEEE
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHh-CCCCeEEEEEEeCCCCCeEEEEEEe
Confidence 457776 79999999999 9 99999999999999966 444555554 457799999999875 334444443
No 237
>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*
Probab=98.30 E-value=1.9e-05 Score=84.76 Aligned_cols=166 Identities=17% Similarity=0.215 Sum_probs=94.5
Q ss_pred ccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec-------CCeEEEEEEEEEcC------------------CCcEEE
Q 001276 67 ASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV-------NREEIPVYPIYRDP------------------VHDFGF 121 (1109)
Q Consensus 67 ~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~-------~~~~~~a~vv~~d~------------------~~DlAl 121 (1109)
...++|.+|++ .+|||+||++... ..+.+-.. .+..+..+-+..+| .+||||
T Consensus 23 ~~~CgGsLIs~--~~VLTAAHC~~~~-~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIAL 99 (237)
T 2zch_P 23 RAVCGGVLVHP--QWVLTAAHCIRNK-SVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLML 99 (237)
T ss_dssp SEEEEEEEEET--TEEEECGGGCCSS-CEEEESCSBSSSCCTTCEEEEEEEEEECTTSCGGGGTSSSCCTTCBCTTCCEE
T ss_pred CeEEEEEEecC--CEEEEcHHhcCCC-ceEEEecccccCCCCCcEEEEEEEEecCCCcchhhhcccccccCCCCCcceEE
Confidence 46799999996 4999999999843 22322111 23556666666665 569999
Q ss_pred EEEcCCC-cccccccCCCCCCccCCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCCccccceeeEE
Q 001276 122 FRYDPSA-IQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDGYNDFNTFYMQ 192 (1109)
Q Consensus 122 Lk~~~~~-~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~~--~~~~~~~~~~~~~~~~iq 192 (1109)
||++..- +. ..+.++.|.......|+.+++.|+..... ..+....+.-+... ...|.. ...+ .+|-
T Consensus 100 l~L~~~~~~~-~~v~pi~Lp~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~~~~---~~~C 174 (237)
T 2zch_P 100 LRLSEPAELT-DAVKVMDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQ-KVTK---FMLC 174 (237)
T ss_dssp EEESSCCCCC-SSCCCCCCCSSCCCTTCEEEEEESCCSSSSSCCCCSBCEEEEEEEECHHHHHHHCSS-BCCT---TEEE
T ss_pred EEeCCCCccC-CcEeeeECCCCCCCCCCEEEEEeCCccCCCCCcCCcccEEeEEEEeCHHHhcccccC-CCCc---eEEe
Confidence 9998542 21 13455566666678899999999864321 11222222222110 000110 1111 1122
Q ss_pred Ee-----eccCCCCCCCceecCCCcEEEEeccccCC----CCCccccchHHHHHHHHH
Q 001276 193 AA-----SGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRF 241 (1109)
Q Consensus 193 ~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falP~~~i~~~l~~ 241 (1109)
+. ...-.|.|||||+- ++.++||.+.+... ...+.+.-+...+..+++
T Consensus 175 a~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~ 231 (237)
T 2zch_P 175 AGRWTGGKSTCSGDSGGPLVC-NGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKD 231 (237)
T ss_dssp EECTTCSCBCCTTCTTCEEES-SSSEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHH
T ss_pred ecCCCCCCcccCCCccCeEEE-CCEEEEEEEeCcCCCCCCCCCcEEEEHHHHHHHHHH
Confidence 21 23557999999995 57999999876521 123444445555555443
No 238
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*
Probab=98.30 E-value=1.1e-05 Score=86.36 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=101.9
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC-------Ce-EEEEEEEEEcCC-
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN-------RE-EIPVYPIYRDPV- 116 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~-------~~-~~~a~vv~~d~~- 116 (1109)
-|-+|.|... ....++|.+|++ .+|||+||++.. ...+.+...+ .. ....+.+..+|.
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLI~~--~~VLTAAHC~~~-~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~ 78 (234)
T 3s69_A 12 HRSLVAFFNS----------TGFFCSGTLINE--EWVLTAAHCDNT-NFQMKLGVHSKKVLNEDEQTRNPKEKFICPNKK 78 (234)
T ss_dssp CTTEEEEECS----------SCEEEEEEEEET--TEEEECGGGCCS-SCEEEESCCCSSSCCTTCEEECEEEEEECTTCC
T ss_pred CceEEEEeeC----------CCeEEeEEEeeC--CEEEEchhhCCC-CceEEecccccccccCCcceeeceEEEECCCcc
Confidence 4567777532 246799999996 499999999973 3333332211 11 223334443443
Q ss_pred ------CcEEEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCC
Q 001276 117 ------HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDG 182 (1109)
Q Consensus 117 ------~DlAlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~~--~~~~~~~~ 182 (1109)
+||||||++..-.....+.++.|.......|+.+.+.|+..... .......+.-+... ...|....
T Consensus 79 ~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~ 158 (234)
T 3s69_A 79 NDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPELL 158 (234)
T ss_dssp TTCTTSSCCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTTCC
T ss_pred CCCCCcccEEEEeeCCcCCCCCcceeeecCCCCCCCCCEEEEEECCCCCCCCcCcccccceeEEeecCHHHHhhhccccc
Confidence 69999999854211123456666666777899999999864321 11222222222210 00011001
Q ss_pred ccccceeeEEE-----eeccCCCCCCCceecCCCcEEEEeccccCC----CCCccccchHHHHHHHHHHHhcC
Q 001276 183 YNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQERR 246 (1109)
Q Consensus 183 ~~~~~~~~iq~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falP~~~i~~~l~~l~~~~ 246 (1109)
..+ ..+-+ ....-.|.|||||+- +++++||.+.+... ...+.+.-+...+..+++..++.
T Consensus 159 ~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~ 227 (234)
T 3s69_A 159 TEY---RTLCAGILEGGKDTCGGDSGGPLIC-NGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIAGN 227 (234)
T ss_dssp TTS---CEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred CCc---ceEeccCCCCCCccCCCCCccceEE-cCEEEEEEEEcccccCCCCCCcEEeeHHHHHHHHHHHhcCC
Confidence 111 11211 223456999999996 67899999876542 12344566666666666555443
No 239
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=98.30 E-value=1.4e-06 Score=78.89 Aligned_cols=60 Identities=27% Similarity=0.391 Sum_probs=46.9
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++....++.+.+.+.|+++
T Consensus 26 ~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 88 (91)
T 1g9o_A 26 KLGQYI-RLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD 88 (91)
T ss_dssp CSSEEE-EEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCCS
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCCcc
Confidence 357776 79999999999 999999999999999998 5666666665555555555666554
No 240
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=98.30 E-value=1.6e-06 Score=79.26 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=50.7
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++| |++||.|++|||+++.+ +.+....++. .++.++|. +.|++.
T Consensus 30 gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~~~ 90 (95)
T 2vwr_A 30 GVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQA--SGERVNLT-IARPGK 90 (95)
T ss_dssp SEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH--CCSEEEEE-EEEESC
T ss_pred CEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCEEEEE-EEcCCc
Confidence 89999999999999999 99999999999999977 5677777775 48899998 677765
No 241
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=98.29 E-value=1.1e-06 Score=81.39 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=51.8
Q ss_pred cEEEEEecCCChhhh-cCCCCCCeEEEECCeeC--CCHHHHHHHHHhCCCCceEEEEEEEe
Q 001276 1009 GVYVARWCHGSPVHR-YGLYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVRTVHL 1066 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~-~GL~~gD~I~~VNg~~v--~~l~~f~~~l~~~~~~~~v~l~~v~r 1066 (1109)
+++|..|.++|||++ +||++||.|++|||+++ .+++++.+.++..+.++.++|+ +.|
T Consensus 38 ~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R 97 (101)
T 2yt7_A 38 TAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLS-IVH 97 (101)
T ss_dssp CEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEE-ECC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE-EEe
Confidence 689999999999999 67999999999999999 8999999999987568889998 444
No 242
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.29 E-value=1.3e-06 Score=82.27 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=53.9
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCC--CCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIE--HGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~--~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.|+..+ .++.++|. +.|++.
T Consensus 42 ~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~-v~R~~~ 106 (109)
T 1wi4_A 42 LVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIA-FIRSGP 106 (109)
T ss_dssp SEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEE-EECCCC
T ss_pred CEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEE-EEeCCC
Confidence 68999999999999999 99999999999999998 899999999864 47888888 677654
No 243
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.29 E-value=2.4e-07 Score=86.23 Aligned_cols=65 Identities=17% Similarity=0.324 Sum_probs=51.6
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCEEEEEEEE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGISMTVNLV 363 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~v~R~g~~~~~~v~ 363 (1109)
.+++| ..|.++|||++ ||++||+|++|||+++.++. ++..++.. .++.+.|+|.|+++..+++++
T Consensus 29 ~~v~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~~~~~~v~ 96 (103)
T 1wf7_A 29 MPLTI-SSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKA-CTGSLNMTLQRASAAAKSEPV 96 (103)
T ss_dssp EEEEE-CCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHH-CSSEEEEEECCCSCCCCCCCC
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCCcCCCCCC
Confidence 45554 79999999999 99999999999999999974 44444433 488999999999987665543
No 244
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=98.29 E-value=5.5e-07 Score=84.22 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=52.4
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHH--HHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLE--AFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~--~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.|++|..|.++|||+++||++||.|++|||+++.++. ++.+.+++ .++.+.|+ +.|++.
T Consensus 26 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~r~~~ 86 (106)
T 3ngh_A 26 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK--SGNSVTLL-VLDGDS 86 (106)
T ss_dssp CSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHH--TTTEEEEE-EECHHH
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh--CCCEEEEE-EEECCe
Confidence 3789999999999999999999999999999999886 99999985 47889998 667654
No 245
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.29 E-value=3e-07 Score=86.05 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=45.9
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeC
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLN 1067 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rd 1067 (1109)
|++|+.|.++|||+++| |++||.|++|||+++.+. ++....++. .+..+.|+ +.|.
T Consensus 26 gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~--~~~~v~l~-v~R~ 84 (106)
T 2la8_A 26 GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG--ANGKVSME-VTRP 84 (106)
T ss_dssp SEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHS--CBSCEEEE-EEEC
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEE-EEeC
Confidence 89999999999999999 999999999999999863 455555554 35668888 5553
No 246
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*
Probab=98.29 E-value=4.7e-06 Score=89.29 Aligned_cols=179 Identities=15% Similarity=0.166 Sum_probs=100.4
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC--------CeEEEEEEEEEcC---
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN--------REEIPVYPIYRDP--- 115 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~--------~~~~~a~vv~~d~--- 115 (1109)
|-+|.|.. ....++|.+|++ .+|||+||++.. ...+.+-..+ .+.+..+-+..+|
T Consensus 13 Pw~v~l~~-----------~~~~CgGsLIs~--~~VLTAAHC~~~-~~~v~~G~~~~~~~~~~~~~~~~v~~~~~hp~y~ 78 (231)
T 2aiq_A 13 RFLALVYA-----------NGSLCGGTLINQ--EWVLTARHCDRG-NMRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRN 78 (231)
T ss_dssp TTEEEEEE-----------TTEEEEEEECSS--SEEEECGGGCCS-SCEEEESCSCTTSCCTTCEEECEEEEECCSSCCS
T ss_pred CeEEEEEc-----------CCCeEEEEEEeC--CEEEEcHHcCCC-CCEEEEecccccccCCCceEEEEEEEEEECCCCC
Confidence 56777752 135799999996 499999999984 2233322211 1234455555554
Q ss_pred ----CCcEEEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCCc
Q 001276 116 ----VHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDGY 183 (1109)
Q Consensus 116 ----~~DlAlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~~--~~~~~~~~~ 183 (1109)
.+||||||++..-.....+.++.|.......|+.+.++|+..... .......+..+... ...|.. .
T Consensus 79 ~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~--~ 156 (231)
T 2aiq_A 79 DTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKG--L 156 (231)
T ss_dssp SSTTTTCCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTT--C
T ss_pred CCCCCCCEEEEEecCCCCCCCcEEeeECCCCCCCCCCEEEEEeCCccCCCCCccCchhhhccceecchhhhhhhhcC--C
Confidence 369999999854211113456666666667899999999864321 11222222222210 001111 1
Q ss_pred cccceeeEEE-----eeccCCCCCCCceecCCCcEEEEeccccCC----CCCccccchHHHHHHHHHHHhc
Q 001276 184 NDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQER 245 (1109)
Q Consensus 184 ~~~~~~~iq~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falP~~~i~~~l~~l~~~ 245 (1109)
.+ ..|-+ ....-.|.|||||+- +|+++||.+.+... ...+.+.-+...+..+++..+.
T Consensus 157 ~~---~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~ 223 (231)
T 2aiq_A 157 AA---TTLCAGILEGGKDTCKGDSGGPLIC-NGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISG 223 (231)
T ss_dssp CS---SEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEEEEECSSTTCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred Cc---CcEEeccCCCCCcccCCcCCCcEEE-CCEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHcC
Confidence 11 11222 124557999999996 58999999876321 2234445555556666554433
No 247
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=98.29 E-value=1.9e-06 Score=79.05 Aligned_cols=57 Identities=26% Similarity=0.387 Sum_probs=48.8
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEEC
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERG 354 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~ 354 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++... ++.+.|+|.|+
T Consensus 36 ~~~~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~ 95 (96)
T 2ego_A 36 EMVTFV-ARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS-GNVLRLETLYG 95 (96)
T ss_dssp CEEEEE-EEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEECC
T ss_pred CCCeEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEEC
Confidence 356666 79999999999 999999999999999999 58888888665 56899998874
No 248
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=98.29 E-value=1.2e-06 Score=83.60 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=53.1
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++| |++||.|++|||+++. +++++.+.++. .++.++|+ +.|++.
T Consensus 54 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~~~ 115 (117)
T 2byg_A 54 NSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKN--TSEVVYLK-VGKPTT 115 (117)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT--CCSEEEEE-EEEEEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCc
Confidence 479999999999999999 9999999999999999 88999999986 37889998 677654
No 249
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=98.29 E-value=7.4e-07 Score=79.64 Aligned_cols=58 Identities=21% Similarity=0.420 Sum_probs=47.2
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++.++ .++...+. ..++.+.|+|.|+++
T Consensus 25 ~~v~V-~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R~~~ 85 (85)
T 1rgw_A 25 MPLTI-SRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK-SASYNLSLTLQKSKR 85 (85)
T ss_dssp SCCBE-EEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHT-TCSSCEEEEEESCCC
T ss_pred CCeEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHH-cCCCeEEEEEEeCCC
Confidence 46666 79999999999 9999999999999999998 44444443 356779999999763
No 250
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A
Probab=98.28 E-value=7.7e-06 Score=87.07 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=85.9
Q ss_pred ccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec---------CCeEEEEEEEEEcCC-------CcEEEEEEcCCCcc
Q 001276 67 ASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV-------HDFGFFRYDPSAIQ 130 (1109)
Q Consensus 67 ~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~---------~~~~~~a~vv~~d~~-------~DlAlLk~~~~~~~ 130 (1109)
...++|.+|+++ +|||+||++.. . ..+.+. +...+..+-+..+|. +||||||++..-.-
T Consensus 22 ~~~CgGsLIs~~--~VLTAAHC~~~-~--~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~ 96 (222)
T 1hj8_A 22 YHFCGGSLVNEN--WVVSAAHCYKS-R--VEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATL 96 (222)
T ss_dssp SEEEEEEEEETT--EEEECGGGCCS-S--CEEEESCSBTTSCCSCCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCC
T ss_pred CcEEEeEEecCC--EEEECHHhcCC-C--eEEEEcccccccCCCCcEEEEEEEEEECCCCCCCCCCCcEEEEEECCcccC
Confidence 467999999964 99999999973 2 334332 234566666666664 69999999854211
Q ss_pred cccccCCCCCCccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCCCCCCccccceeeEEEe-----eccC
Q 001276 131 FLNYDEIPLAPEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHYKKDGYNDFNTFYMQAA-----SGTK 198 (1109)
Q Consensus 131 ~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~--~~~~~~~~~~~~~~~~iq~~-----a~~~ 198 (1109)
...+.++.|....+..|+.+.+.|+..... .......+.-+... ...|.. ...+ ..+-+. ...-
T Consensus 97 ~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~C 172 (222)
T 1hj8_A 97 NTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPG-MITN---AMFCAGYLEGGKDSC 172 (222)
T ss_dssp SSSCCCCBCCSSCCCTTCEEEEEESSCCCCSSCCTTBCEEEEEEBCCHHHHHHHSTT-CCCT---TEEEESCTTSSCBCC
T ss_pred CCceeccCCCCCCCCCCCEEEEEECCCCCCCCCCCceeEEEEEEEcCHHHhhhhccC-CCCC---CeEEeccCCCCCccC
Confidence 113455566666678999999999864321 12222222222110 000110 0111 112221 2345
Q ss_pred CCCCCCceecCCCcEEEEecccc
Q 001276 199 GGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 199 ~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
.|.|||||+- +|+++||.+.+.
T Consensus 173 ~GDSGgPL~~-~~~l~Gi~S~g~ 194 (222)
T 1hj8_A 173 QGDSGGPVVC-NGELQGVVSWGY 194 (222)
T ss_dssp TTCTTCEEEE-TTEEEEEEEECS
T ss_pred CCCcccceEE-CCEEEEEEeecC
Confidence 7999999996 689999998764
No 251
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Probab=98.28 E-value=2e-05 Score=83.94 Aligned_cols=175 Identities=17% Similarity=0.218 Sum_probs=99.8
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec---------CCeEEEEEEEEEcCC-
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV- 116 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~---------~~~~~~a~vv~~d~~- 116 (1109)
|-+|.|... ....++|.+|+++ +|||+||++.. . ..+.+. +.+.+.+.-+..+|.
T Consensus 13 Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~-~--~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y 77 (223)
T 1lo6_A 13 PYQAALYTS----------GHLLCGGVLIHPL--WVLTAAHCKKP-N--LQVFLGKHNLRQRESSQEQSSVVRAVIHPDY 77 (223)
T ss_dssp TTEEEEEET----------TEEEEEEEEEETT--EEEECGGGCCT-T--CEEEESCSBTTSCCTTCEEEEEEEEEECTTC
T ss_pred CCEEEEecC----------CCEEEEeEEecCC--EEEECccCCCC-C--eEEEEcceecCCCCCCcEEEEEEEEEECCCC
Confidence 567777531 2467999999964 99999999973 2 334332 234566665666654
Q ss_pred ------CcEEEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCC----CeEEEEEEEEecCC--CCCCCCCCcc
Q 001276 117 ------HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK----VSILAGTLARLDRD--APHYKKDGYN 184 (1109)
Q Consensus 117 ------~DlAlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~----~si~~G~vs~~~~~--~~~~~~~~~~ 184 (1109)
+||||||++....-...+.++.|.......|+.+.+.|+..... ..+....+.-+.+. ...|.. .+.
T Consensus 78 ~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-~~~ 156 (223)
T 1lo6_A 78 DAASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPG-QIT 156 (223)
T ss_dssp CTTTCTTCCEEEEESSCCCCBTTBCCCCBCCCTTCCCCEEEEEESSCCTTSSCCSBCEEEEEEEECHHHHHHHSTT-TCC
T ss_pred CCCCCcCeEEEEEECCcccCCCceeecccCCCCCCCCCEEEEEEECCCCCCCcCceeeEEEEEEeCHHHhhhhhCC-CCC
Confidence 69999999854211113455666666668999999999864321 12222222222110 001111 111
Q ss_pred ccceeeEEEe-----eccCCCCCCCceecCCCcEEEEecccc-CC---CCCccccchHHHHHHHHH
Q 001276 185 DFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSK-SS---SASAFFLPLERVVRALRF 241 (1109)
Q Consensus 185 ~~~~~~iq~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~-~~---~~~~falP~~~i~~~l~~ 241 (1109)
+ .++-+. ...-.|.|||||+- +|+++||.+.+. .- ...+.+.-+...+..+++
T Consensus 157 ~---~~~Ca~~~~~~~~~C~GDsGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~ 218 (223)
T 1lo6_A 157 Q---NMLCAGDEKYGKDSCQGDSGGPLVC-GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQK 218 (223)
T ss_dssp T---TEEEEECTTTCCBCCTTTTTCEEEE-TTEEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHH
T ss_pred C---CeEEeecCCCCCeeccccCCCcEEe-CCEEEEEEeeCCCCCCCCCCCcEEEEHHHHHHHHHH
Confidence 1 122221 23457999999996 579999998763 21 123334444444555444
No 252
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=98.28 E-value=1.6e-06 Score=81.46 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=49.9
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEE
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVH 1065 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~ 1065 (1109)
|++|..|.++|||+++||++||.|++|||+++.++ +++.+.++.. ++.++|+++.
T Consensus 46 gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~--~~~v~l~v~~ 102 (109)
T 1q3o_A 46 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG--GNTLMVKVVM 102 (109)
T ss_dssp SEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT--TTEEEEEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCEEEEEEEE
Confidence 89999999999999999999999999999999999 9999999873 7778888443
No 253
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.28 E-value=1.3e-06 Score=84.78 Aligned_cols=60 Identities=22% Similarity=0.327 Sum_probs=55.0
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++. .++.+.|+ +.|++..
T Consensus 46 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~--~~~~v~l~-v~R~~~~ 108 (129)
T 2dmz_A 46 SGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN--AGQVVHLT-LVRRKTS 108 (129)
T ss_dssp CEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH--CCSSEEEE-EEEESSS
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCcc
Confidence 489999999999999999 99999999999999999 9999999998 58889999 6777753
No 254
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.28 E-value=3.9e-07 Score=85.86 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=57.9
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEeeC
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQD 1078 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk~~ 1078 (1109)
.+++|..|.++|||+++| |++||.|++|||+++. ++.++...++. .++.++|+ +.|++....+++++.
T Consensus 36 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~R~~~~~~~~v~~~ 106 (110)
T 1um1_A 36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH--GGKKMRFL-VAKSDVETAKKIHSG 106 (110)
T ss_dssp SSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT--CCSEEEEE-EECCCHHHHHHHSSC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCcceeEEEEec
Confidence 489999999999999999 9999999999999997 47888888876 38899999 788887666555543
No 255
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.28 E-value=1.3e-06 Score=80.99 Aligned_cols=60 Identities=22% Similarity=0.421 Sum_probs=50.3
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.++ .++...+.. .|+.+.|+|.|++..
T Consensus 29 ~~g~~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~~ 91 (102)
T 2d90_A 29 QKGQII-KDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKEAE 91 (102)
T ss_dssp SSSEEE-ECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHH-STTEEEEEECSTTCC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECCCc
Confidence 467776 69999999999 9999999999999999984 666666654 488999999887654
No 256
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=98.28 E-value=1.7e-06 Score=84.00 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=53.8
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
+++|..|.++|||+++| |++||.|++|||+++. +++++.+.++..+.++.++|+ +.|++
T Consensus 44 ~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~~ 105 (129)
T 2kpk_A 44 FLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLE-LCRGY 105 (129)
T ss_dssp EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEE-EEECS
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE-EEeCC
Confidence 68999999999999999 9999999999999998 478999999997668899999 67765
No 257
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=7.9e-07 Score=81.20 Aligned_cols=59 Identities=25% Similarity=0.434 Sum_probs=48.2
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..+++| ..|.++|||++ ||++||+|++|||+++.++ .++...+.. .++.+.|+|.|+++
T Consensus 31 ~~~v~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~ 92 (94)
T 2eeg_A 31 SAPLTI-SRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG-CHDHLTLSVSSGPS 92 (94)
T ss_dssp TSCCEE-CCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHT-CCSCEEEEEECCSS
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 356666 79999999999 9999999999999999996 344444433 68889999999875
No 258
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2
Probab=98.28 E-value=3.2e-05 Score=82.96 Aligned_cols=164 Identities=18% Similarity=0.242 Sum_probs=93.7
Q ss_pred cEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC---------CeEEEEEEEEEcCC------------------CcEE
Q 001276 68 SYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV------------------HDFG 120 (1109)
Q Consensus 68 ~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~---------~~~~~a~vv~~d~~------------------~DlA 120 (1109)
..++|.+|++ .+|||+||++. .. ..+.+.. ...+..+-+..+|. +|||
T Consensus 22 ~~CgGsLIs~--~~VLTAAHC~~-~~--~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~~~~DIA 96 (235)
T 1ton_A 22 YLCGGVLIDP--SWVITAAHCYS-NN--YQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLM 96 (235)
T ss_dssp SEEEEEEEET--TEEEECGGGCC-SC--CEEEESCSBTTSCCTTCEEECEEEEEECTTCCCC--------CCCCSTTCCE
T ss_pred CeEEEEEecC--CEEEEcHHhCC-CC--cEEEeCcccccCCCCcceEEEEEEEEeCCCCcccccccccccccCCCcCCEE
Confidence 6799999996 49999999996 22 3343321 23455555555543 5999
Q ss_pred EEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCC------CeEEEEEEEEecC--CCCCCCCCCccccceeeEE
Q 001276 121 FFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDR--DAPHYKKDGYNDFNTFYMQ 192 (1109)
Q Consensus 121 lLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~--~~~~~~~~~~~~~~~~~iq 192 (1109)
|||++..-.-...+.++.|....+..|+.+.+.|+..... .......+.-+.. -...|.. ...+ .++=
T Consensus 97 Ll~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~~~~---~~~C 172 (235)
T 1ton_A 97 LLHLSEPADITGGVKVIDLPTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKD-NVTD---VMLC 172 (235)
T ss_dssp EEEESSCCCCCSSCCCCCCCCSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECGGGCGGGGST-TGGG---GEEE
T ss_pred EEEcCCccccCCcceeeeCCCCCCCCCCEEEEEecCCCCCCCCccCccceEEEEEEeCHHHHHHHhcC-cCCC---CeEe
Confidence 9999854211113455666666678999999999864321 1222223332222 1111211 1111 1222
Q ss_pred Ee-----eccCCCCCCCceecCCCcEEEEeccccCC----CCCccccchHHHHHHHHH
Q 001276 193 AA-----SGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRF 241 (1109)
Q Consensus 193 ~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falP~~~i~~~l~~ 241 (1109)
+. ...-.|.|||||+- +|.++||.+.+... ...+.+.-+...+..+++
T Consensus 173 a~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~ 229 (235)
T 1ton_A 173 AGEMEGGKDTCAGDSGGPLIC-DGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKK 229 (235)
T ss_dssp EECTTCSCBCCTTCTTCEEEE-TTEEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHH
T ss_pred eccCCCCCcCCCCCCccccEE-CCEEEEEEeeCCCCCCCCCCCeEEEEHHHHHHHHHH
Confidence 21 23457999999996 68999999876321 123444445555555544
No 259
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=1.3e-06 Score=81.28 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=51.8
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++| |++||.|++|||+++.+ +.++.+.++. .++.++|+ +.|+++
T Consensus 39 ~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~g~ 99 (104)
T 2djt_A 39 PLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA--GGPQLHLV-IRRPLS 99 (104)
T ss_dssp CCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH--TCSEEEEE-ECCCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEECCC
Confidence 68999999999999999 99999999999999988 5788888887 48889998 677765
No 260
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=98.27 E-value=1.6e-06 Score=83.23 Aligned_cols=60 Identities=27% Similarity=0.410 Sum_probs=51.2
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcC-CCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDG-VDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~-~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++... .|+.+.|+|.|+|+
T Consensus 57 ~~gv~V-~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 121 (121)
T 2kom_A 57 SAPIYV-KNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQED 121 (121)
T ss_dssp SCCEEE-EEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEECCC
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeCCC
Confidence 356666 79999999999 9 99999999999999988 47777777654 58999999999874
No 261
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.27 E-value=1.8e-06 Score=105.00 Aligned_cols=70 Identities=20% Similarity=0.174 Sum_probs=61.7
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhHHHHHHhc-CCCCeEEEEEEECCEEEEEEEEeecCC
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDD-GVDKNIELLIERGGISMTVNLVVQDLH 368 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~l~~~l~~-~~g~~v~l~v~R~g~~~~~~v~l~~~~ 368 (1109)
.|++| ..|.++|||++ ||++||+|++|||++| +..++..++.. ..|+.|+|+|.|+|+.+++++++...+
T Consensus 496 ~gv~V-~~V~~~spA~~AGL~~GD~I~aInG~~v-~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~ 567 (597)
T 4fgm_A 496 QGLDV-LNVYHDESAYHAGLSAGDKIIAIDHLQA-TEQSVKRILERYIPGDTVTIHAFRRDELMTLELTWQEPA 567 (597)
T ss_dssp TEEEE-EEECTTSHHHHHTCCTTCEEEEETTEEC-CTTTHHHHHTTCCTTCEEEEEEEETTEEEEEEEECCCCC
T ss_pred CeEEE-EEeCCCChHHHCCCCCCCEEEEECCEEC-CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEecCCC
Confidence 35454 79999999999 9999999999999999 58899998865 689999999999999999999887544
No 262
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=98.27 E-value=6.2e-07 Score=85.09 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=55.5
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCeEEEE
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGKPRVL 1073 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i 1073 (1109)
.+++|..|.++|||+++||++||.|++|||+++.++ +++.+.++. + ++.++|+ +.|+++...+
T Consensus 38 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~-g~~v~l~-v~R~~~~~~~ 102 (114)
T 2edz_A 38 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK-S-GNSVTLL-VLDGDSYEKA 102 (114)
T ss_dssp CSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHH-T-CSEEEEE-EECHHHHHHH
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-C-CCEEEEE-EEECCcceeh
Confidence 488999999999999999999999999999999885 999999987 3 8999999 7888765433
No 263
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=98.27 E-value=1.7e-06 Score=77.36 Aligned_cols=57 Identities=28% Similarity=0.467 Sum_probs=47.9
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcC-CCCeEEEEEEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDG-VDKNIELLIER 353 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~-~g~~v~l~v~R 353 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++... .|+.+.|+|.|
T Consensus 24 ~~~~~V-~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 24 DEFLQI-KSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp TBCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 356666 79999999999 9 99999999999999984 57777777654 48889998876
No 264
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.27 E-value=1.7e-06 Score=79.43 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=48.2
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEEC
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERG 354 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~ 354 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++... ++.++|+|.+.
T Consensus 36 ~gv~V-~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~-~~~v~L~V~~~ 95 (97)
T 2ejy_A 36 QSCTV-ARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-KGMISLKVIPN 95 (97)
T ss_dssp CCEEE-EEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC-CEEEEEEEECC
T ss_pred CCEEE-EEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 56665 79999999999 9 99999999999999996 89999888654 66888888764
No 265
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=98.27 E-value=1.5e-06 Score=80.49 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=51.5
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.++ +++.+.++. .++.++|+ +.|++.
T Consensus 37 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~~~ 98 (101)
T 2jik_A 37 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN--AGYAVSLR-VQHRLE 98 (101)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHT--CCSEEEEE-EEEESC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh--CCCeEEEE-EEeCCC
Confidence 489999999999999999 999999999999999885 788888876 37789998 677654
No 266
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=98.27 E-value=1.8e-06 Score=78.82 Aligned_cols=59 Identities=22% Similarity=0.439 Sum_probs=48.1
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++.++ .++..++.. .+..+.+.+.|.+..
T Consensus 29 ~~~~V-~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~~~~~~~r~~~~ 90 (95)
T 3r68_A 29 KGQII-KDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKELE 90 (95)
T ss_dssp CSEEE-ECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEEEECC--
T ss_pred CCEEE-EEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEECCccc
Confidence 47776 69999999999 9999999999999999998 777777766 566777777776543
No 267
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=98.26 E-value=1.7e-06 Score=79.20 Aligned_cols=59 Identities=27% Similarity=0.489 Sum_probs=49.4
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++. ++.++..++.. .|+.+.|+|.|++.
T Consensus 32 ~~g~~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 94 (96)
T 1d5g_A 32 HGGIYV-KAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLLEKGQS 94 (96)
T ss_dssp SSCCEE-EEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEECCSC
T ss_pred cCCEEE-EEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence 357776 79999999999 9 9999999999999999 45666666654 68899999999764
No 268
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2
Probab=98.26 E-value=1.7e-05 Score=84.64 Aligned_cols=145 Identities=20% Similarity=0.216 Sum_probs=85.2
Q ss_pred ccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec---------CCeEEEEEEEEEcCC----------CcEEEEEEcCC
Q 001276 67 ASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV----------HDFGFFRYDPS 127 (1109)
Q Consensus 67 ~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~---------~~~~~~a~vv~~d~~----------~DlAlLk~~~~ 127 (1109)
...++|.+|+++ +|||+||++.. . ..+.+. ....+..+-+..+|. +||||||++..
T Consensus 23 ~~~CgGsLI~~~--~VLTAAHC~~~-~--~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~ 97 (225)
T 1npm_A 23 RLICGGVLVGDR--WVLTAAHCKKQ-K--YSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNS 97 (225)
T ss_dssp EEEEEEEEEETT--EEEECGGGCCS-S--CEEEESCSBTTC--CCCEEECEEEEEECTTCCSSCTTCCTTCCEEEEESSC
T ss_pred ceEEEEEEECCC--EEEEhHHcCCC-C--ceEEEeeeEcCCCCCCcEEEEEEEEEECCCCCCCCccCccccEEEEeeCCc
Confidence 467999999964 99999999972 2 344442 234566665566553 49999999854
Q ss_pred CcccccccCCCCCCccCCCCCEEEEEecCCCC------CCeEEEEEEEEecCC--CCCCCCCCccccceeeEEE----ee
Q 001276 128 AIQFLNYDEIPLAPEAACVGLEIRVVGNDSGE------KVSILAGTLARLDRD--APHYKKDGYNDFNTFYMQA----AS 195 (1109)
Q Consensus 128 ~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~------~~si~~G~vs~~~~~--~~~~~~~~~~~~~~~~iq~----~a 195 (1109)
..-...+.++.|....+..|+.+.+.|+.... ........+.-+... ...|.. ...+ ..|-+ ..
T Consensus 98 ~~~~~~v~pi~L~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~~~~---~~~Ca~~~~~~ 173 (225)
T 1npm_A 98 ANLGDKVKPVQLANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPG-KITE---GMVCAGSSNGA 173 (225)
T ss_dssp CCCSSSSCCCEECSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECCHHHHHHHSTT-TCCT---TEEEEECTTCC
T ss_pred ccCCCceeceECCCCCCCCCCEEEEEeCCcccCCCCCCCccceEeEEeeecHHHhhHHhCC-CCCC---CEEeecCCCCC
Confidence 21111244555555567899999999986431 112222223222210 001111 1111 11222 23
Q ss_pred ccCCCCCCCceecCCCcEEEEecccc
Q 001276 196 GTKGGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 196 ~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
..-.|.|||||+- +|+++||.+.+.
T Consensus 174 ~~C~GDSGgPL~~-~~~l~GI~S~g~ 198 (225)
T 1npm_A 174 DTCQGDSGGPLVC-DGMLQGITSWGS 198 (225)
T ss_dssp BCCTTCTTCEEEE-TTEEEEEEEECC
T ss_pred eecCCCCCchheE-CCEEEEEEEeCC
Confidence 4567999999996 689999998763
No 269
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.26 E-value=2.4e-06 Score=103.87 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=76.9
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEeeCCccCcceEE
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLKQDLHYWPTWEL 1087 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk~~~~y~pt~e~ 1087 (1109)
.|++|..|.++|||+++||++||.|++|||++| +.++|.+++++.+.|+.++|+ +.|+|+.+.+++++...--.++.|
T Consensus 496 ~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v-~~~~l~~~l~~~~~g~~v~l~-v~R~g~~~~~~v~l~~~~~~~~~l 573 (597)
T 4fgm_A 496 QGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQA-TEQSVKRILERYIPGDTVTIH-AFRRDELMTLELTWQEPAKSSYVL 573 (597)
T ss_dssp TEEEEEEECTTSHHHHHTCCTTCEEEEETTEEC-CTTTHHHHHTTCCTTCEEEEE-EEETTEEEEEEEECCCCCCCEEEE
T ss_pred CeEEEEEeCCCChHHHCCCCCCCEEEEECCEEC-CHHHHHHHHHhcCCCCEEEEE-EEECCEEEEEEEEecCCCCceEEE
Confidence 379999999999999999999999999999999 689999999987779999999 899999999999998776677888
Q ss_pred EEcCC--CCCeE
Q 001276 1088 IFDPD--TALWR 1097 (1109)
Q Consensus 1088 ~~~~~--~~~w~ 1097 (1109)
..++. -..|-
T Consensus 574 ~~~~~~~~~~wl 585 (597)
T 4fgm_A 574 SVEQPDKLKGWL 585 (597)
T ss_dssp EESCGGGSTTSS
T ss_pred EECCHHHHHhhh
Confidence 77642 34463
No 270
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=98.26 E-value=1.7e-06 Score=80.24 Aligned_cols=61 Identities=21% Similarity=0.451 Sum_probs=50.6
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGISM 358 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~~ 358 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+ +.++...+.. .|+.+.|+|.|+++..
T Consensus 33 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~~ 97 (102)
T 2i1n_A 33 DPGIFI-TKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE-AGPVVRLVVRRRQPPP 97 (102)
T ss_dssp CCCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEECCCC
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCCCC
Confidence 467777 79999999999 9 99999999999999987 5555555544 6889999999987643
No 271
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=98.26 E-value=1.6e-06 Score=79.12 Aligned_cols=60 Identities=22% Similarity=0.398 Sum_probs=48.1
Q ss_pred CCCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001276 295 GETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
...|++| ..|.++|||++ | |++||+|++|||+++.++ .++...+. ..++.+.|+|.|+|+
T Consensus 31 ~~~gv~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R~g~ 94 (94)
T 2fe5_A 31 GDNSIYI-TKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLK-NTSDMVYLKVAKPGS 94 (94)
T ss_dssp TBCCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHH-TCCSEEEEEEECCCC
T ss_pred CCCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEcCCC
Confidence 3467776 79999999999 9 999999999999999985 44444443 345689999999763
No 272
>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...
Probab=98.26 E-value=6.3e-06 Score=87.67 Aligned_cols=165 Identities=14% Similarity=0.179 Sum_probs=94.5
Q ss_pred ccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec---------CCeEEEEEEEEEcCC-------CcEEEEEEcCCCcc
Q 001276 67 ASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV-------HDFGFFRYDPSAIQ 130 (1109)
Q Consensus 67 ~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~---------~~~~~~a~vv~~d~~-------~DlAlLk~~~~~~~ 130 (1109)
...++|.+|++ .+|||+||++.. . ..+.+. +...+.++-+..+|. +||||||++....-
T Consensus 22 ~~~C~GtLI~~--~~VLTAAhC~~~-~--~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DIAll~L~~~~~~ 96 (223)
T 4i8h_A 22 YHFCGGSLINS--QWVVSAAHCYKS-G--IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASL 96 (223)
T ss_dssp SEEEEEEECSS--SEEEECGGGCCS-S--CEEEESCSSTTSCCSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCC
T ss_pred CcEEEEEEEcC--CEEEecHHhCCC-C--cEEEEccccccccCCCcEEEEEeEEEECcCCCCCCCcCCEEEEEECCcCcC
Confidence 45699999986 499999999984 2 333332 234566666677774 69999999854211
Q ss_pred cccccCCCCCCccCCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCCccccceeeEEE-----eecc
Q 001276 131 FLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDGYNDFNTFYMQA-----ASGT 197 (1109)
Q Consensus 131 ~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~~--~~~~~~~~~~~~~~~~iq~-----~a~~ 197 (1109)
...+.++.|.......|+.+.+.|+..... .......+.-+... ...|.. ...+ ..+-+ ....
T Consensus 97 ~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~ 172 (223)
T 4i8h_A 97 NSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG-QITS---NMFCAGYLEGGKDS 172 (223)
T ss_dssp BTTBCCCBCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT-TCCT---TEEEESCTTSSCBC
T ss_pred CCceeceECCCCCCCCCCEEEEEecccccCCCCCccccceEEEeeecCHHHHHHhhCC-CCCC---CeEeccCCCCCCcc
Confidence 113455666666678999999999864321 11222222222110 000110 0111 11222 1234
Q ss_pred CCCCCCCceecCCCcEEEEeccccCCC---CCccccchHHHHHHHHH
Q 001276 198 KGGSSGSPVIDWQGRAVALNAGSKSSS---ASAFFLPLERVVRALRF 241 (1109)
Q Consensus 198 ~~G~SGgPv~n~~G~vVGi~~~~~~~~---~~~falP~~~i~~~l~~ 241 (1109)
-.|.|||||+- +++++||.+.+..-. ..+.+..+...+..+++
T Consensus 173 C~GDsGgPl~~-~~~l~Gi~S~g~~c~~~~~p~vyt~v~~~~~WI~~ 218 (223)
T 4i8h_A 173 CQGDSGGPVVC-SGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218 (223)
T ss_dssp CTTCTTCEEEE-TTEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHH
T ss_pred CCCCCCCcEEE-CCEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHH
Confidence 56999999996 569999998765321 23444555555555443
No 273
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.25 E-value=9.5e-07 Score=80.04 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=46.2
Q ss_pred EEEEecCCCcccc-CCCCCCEEEEECCEEe--CChhHHHHHHhcCCCCeEEEEEEEC
Q 001276 301 VVDSVVPGGPAHL-RLEPGDVLVRVNGEVI--TQFLKLETLLDDGVDKNIELLIERG 354 (1109)
Q Consensus 301 Vv~~V~~~spA~~-gL~~GD~Il~VnG~~v--~~~~~l~~~l~~~~g~~v~l~v~R~ 354 (1109)
+|..|.++|||++ ||++||+|++|||+++ .++.++..++.. .|+.+.|+|.+.
T Consensus 34 ~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~p~ 89 (90)
T 1y7n_A 34 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN-AVGEIHMKTMPA 89 (90)
T ss_dssp EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHH-CCEEEEEEEECC
T ss_pred EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 4579999999999 9999999999999999 578899888864 478899988764
No 274
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=98.25 E-value=4.8e-07 Score=85.67 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=56.4
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeEEEEEEe
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKPRVLTLK 1076 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~~~i~lk 1076 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ +.++...++. .++.++|. +.|++....+++.
T Consensus 35 ~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~~~~~~~~v~ 103 (113)
T 2g5m_B 35 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN--TKGRVRFM-IGRERPGEQSEVA 103 (113)
T ss_dssp EEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHH--SCSSCEEE-EEECCCCTTSSCS
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCCeEEEE-EEeCCCCCcchhh
Confidence 489999999999999999 99999999999999985 7788888887 37889999 7888876544443
No 275
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*
Probab=98.25 E-value=6.4e-06 Score=87.39 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=87.6
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC-CeEEEEEecC---------CeEEEEEEEEEc--
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFVN---------REEIPVYPIYRD-- 114 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~-~~~~~v~~~~---------~~~~~a~vv~~d-- 114 (1109)
|-+|.|... ....++|.+|+++ +|||+||++... ...+.+.+.. ...+..+-+..+
T Consensus 13 Pw~v~l~~~----------~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h~y 80 (218)
T 2z7f_E 13 PFMVSLQLR----------GGHFCGATLIAPN--FVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGY 80 (218)
T ss_dssp TTEEEEEET----------TEEEEEEEEEETT--EEEECHHHHTTSCGGGCEEEESCSBTTSCCTTCEEEEEEEEEESCC
T ss_pred CcEEEEEeC----------CCcEEEEEEccCC--EEEEcHHhcCCCCcCcEEEEEeceecCCCCCceEEEEEEEEEccCC
Confidence 567777652 2467999999964 999999999743 2345555542 144555544443
Q ss_pred ----CCCcEEEEEEcCCC-cccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecCCCCCCCCCC
Q 001276 115 ----PVHDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRDAPHYKKDG 182 (1109)
Q Consensus 115 ----~~~DlAlLk~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~~~~~~~~~ 182 (1109)
..+||||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+.-+...-.
T Consensus 81 ~~~~~~~DIALl~L~~~~~~~-~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~C~------ 153 (218)
T 2z7f_E 81 DPVNLLNDIVILQLNGSATIN-ANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCR------ 153 (218)
T ss_dssp BTTTTBSCCEEEEESSCCCCS-SSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSCCBCSBCEEEEEEEECTTCC------
T ss_pred CCCCCCCCEEEEEECCcCcCC-CceeccCcCCCCCCCCCCCEEEEEEeCCCCCCCCccchheEeeeEEehhHcC------
Confidence 34799999997542 11 123344443 33457899999999864321 1122222222211100
Q ss_pred ccccceeeEEE-----eeccCCCCCCCceecCCCcEEEEecc
Q 001276 183 YNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAG 219 (1109)
Q Consensus 183 ~~~~~~~~iq~-----~a~~~~G~SGgPv~n~~G~vVGi~~~ 219 (1109)
.. .+-+ ....-.|.|||||+- +|.++||.+.
T Consensus 154 --~~---~~Ca~~~~~~~~~C~GDSGgPl~~-~~~l~Gi~S~ 189 (218)
T 2z7f_E 154 --RS---NVCTLVRGRQAGVCFGDSGSPLVC-NGLIHGIASF 189 (218)
T ss_dssp --TT---SEEEECTTSCCBCCTTCTTCEEEE-TTEEEEEEEE
T ss_pred --cc---eeeeccCCCCCeeCCCcCCCceEE-ccEEEEEEEe
Confidence 00 1111 134557999999996 6799999987
No 276
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=98.25 E-value=2e-06 Score=81.04 Aligned_cols=61 Identities=26% Similarity=0.418 Sum_probs=51.7
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhc-CCCCeEEEEEEECCEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDD-GVDKNIELLIERGGIS 357 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~-~~g~~v~l~v~R~g~~ 357 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++.. ..|+.+.|+|.|+++.
T Consensus 38 ~~g~~V-~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~ 103 (111)
T 2koj_A 38 SAPIYV-KNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEA 103 (111)
T ss_dssp SSCEEE-EEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECCCC
T ss_pred CcCEEE-EEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCC
Confidence 356666 79999999999 9 99999999999999966 4777777765 4689999999998763
No 277
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.25 E-value=1.4e-06 Score=81.32 Aligned_cols=58 Identities=21% Similarity=0.377 Sum_probs=51.9
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++.. ++.++|+ +.|++
T Consensus 38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~--g~~v~l~-v~R~~ 98 (105)
T 1wha_A 38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA--SPTIALL-LEREA 98 (105)
T ss_dssp CSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC--CSCEEEE-EEECC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEECC
Confidence 478999999999999999 99999999999999988 89999999873 7789998 66654
No 278
>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Probab=98.25 E-value=1.3e-05 Score=85.76 Aligned_cols=147 Identities=14% Similarity=0.158 Sum_probs=86.6
Q ss_pred ccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC---------CeEEEEEEEEEcCC-------CcEEEEEEcCCCcc
Q 001276 67 ASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV-------HDFGFFRYDPSAIQ 130 (1109)
Q Consensus 67 ~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~---------~~~~~a~vv~~d~~-------~DlAlLk~~~~~~~ 130 (1109)
...++|.+|++ .+|||+||++.. ...+.|.+.. ...+.++-+..+|. +||||||++..-.-
T Consensus 24 ~~~CgGtLI~~--~~VLTAAHC~~~-~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~ 100 (228)
T 1fxy_A 24 EGFCGGTILSE--FYILTAAHCLYQ-AKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITF 100 (228)
T ss_dssp CEEEEEEECSS--SEEEECGGGTTS-CSSCEEEEECSCTTTCCCCEEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCC
T ss_pred CeeEEEEEeeC--CEEEECHHHCCC-CCcEEEEECccCccccCCCcEEEEEEEEEECCCCCCCCCcCcEEEEEECCcccC
Confidence 46799999996 499999999963 3344555432 23455666666654 69999999854211
Q ss_pred cccccCCCCCCccCCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCCccccceeeEEE-----eecc
Q 001276 131 FLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDGYNDFNTFYMQA-----ASGT 197 (1109)
Q Consensus 131 ~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~~--~~~~~~~~~~~~~~~~iq~-----~a~~ 197 (1109)
...+.++.|.......|+.+.+.|+..... .......+.-+.+. ...|.. ...+ ..+-+ ....
T Consensus 101 ~~~v~picLp~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~ 176 (228)
T 1fxy_A 101 RMNVAPASLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPG-KITS---NMFCVGFLEGGKDS 176 (228)
T ss_dssp BTTBCCCCCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT-TCCT---TEEEESCTTCSCBC
T ss_pred CCceeccCCCCCCCCCCCEEEEEecCccCCCCCCCCccceEEEEEEeCHHHhHhhcCC-CCCC---CEEEeccCCCCCcc
Confidence 113455566666678999999999864321 11222222222110 000110 0111 11222 1235
Q ss_pred CCCCCCCceecCCCcEEEEecccc
Q 001276 198 KGGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 198 ~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
-.|.|||||+- +|+++||.+.+.
T Consensus 177 C~GDSGgPL~~-~~~l~Gi~S~g~ 199 (228)
T 1fxy_A 177 CQGDSGGPVVC-NGQLQGVVSWGD 199 (228)
T ss_dssp CTTCTTCEEEE-TTEEEEEEEECS
T ss_pred ccCccccceEE-CCEEEEEEEECC
Confidence 57999999996 579999998764
No 279
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Probab=98.25 E-value=2.3e-05 Score=84.11 Aligned_cols=174 Identities=18% Similarity=0.181 Sum_probs=98.7
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC---------CeEEEEEEEEEcC--
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDP-- 115 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~---------~~~~~a~vv~~d~-- 115 (1109)
|-+|.|... ....++|.+|+++ +|||+||++. .. ..+.+.. ...+..+-+..+|
T Consensus 13 Pw~v~l~~~----------~~~~CgGtLI~~~--~VLTAAHC~~-~~--~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y 77 (237)
T 1ao5_A 13 PWQVAVYYQ----------KEHICGGVLLDRN--WVLTAAHCYV-DQ--YEVWLGKNKLFQEEPSAQHRLVSKSFPHPGF 77 (237)
T ss_dssp TTEEEEEET----------TEEEEEEEEEETT--EEEECTTCCC-SS--CEEEESCCBSSSCCSSCEECCEEEEEECTTS
T ss_pred CCEEEEeeC----------CCeEEEEEEeeCC--EEEECHHHCC-CC--CEEEecccccccCCCCcEEEEEEEEEcCCCc
Confidence 557777642 2467999999964 9999999996 22 3444321 2344455555554
Q ss_pred ----------------CCcEEEEEEcCCC-cccccccCCCCCCccCCCCCEEEEEecCCCCC------CeEEEEEEEEec
Q 001276 116 ----------------VHDFGFFRYDPSA-IQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLD 172 (1109)
Q Consensus 116 ----------------~~DlAlLk~~~~~-~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~ 172 (1109)
.+||||||++..- +. ..+.++.|....+..|+.+.+.|+..... .......+.-+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~-~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~ 156 (237)
T 1ao5_A 78 NMSLLMLQTIPPGADFSDDLMLLRLSKPADIT-DVVKPIALPTKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLP 156 (237)
T ss_dssp CGGGGGCSSCCTTCCCTTCCEEEEESSCCCCC-SSSCCCCCCCSCCCTTCEEEEEESCCSSCC-CCCCSBCEEEEEEEEC
T ss_pred CcccccccccccccCCCCCEEEEEeCCccccC-CceeCCCcCCCCCCCCCEEEEEECCccCCCCCCCCCcccEEEEEecC
Confidence 5799999998542 21 13455666666678999999999864221 112222222221
Q ss_pred CC--CCCCCCCCccccceeeEEEe-----eccCCCCCCCceecCCCcEEEEeccccCC----CCCccccchHHHHHHHHH
Q 001276 173 RD--APHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRF 241 (1109)
Q Consensus 173 ~~--~~~~~~~~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falP~~~i~~~l~~ 241 (1109)
.. ...|.. ...+ .+|-+. ...-.|.|||||+- +|.++||.+.+... ...+.+.-+...+..+++
T Consensus 157 ~~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~ 231 (237)
T 1ao5_A 157 NENCAKVYLQ-KVTD---VMLCAGEMGGGKDTCRDDSGGPLIC-DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKD 231 (237)
T ss_dssp HHHHHHHCSS-CCCT---TEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHH
T ss_pred hhHhhhhhcc-cCCC---CEEEEccCCCCCCCCCCCCcceEEE-CCEEeEEEeEcCCCCCCCCCCcEEEEHHHHHHHHHH
Confidence 10 001111 1111 112221 23457999999996 68999999876321 122334455544554443
No 280
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=98.25 E-value=1.7e-06 Score=82.44 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=50.0
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ | |++||+|++|||+.+. ++.++..++.. .|+.|+|+|.|+++
T Consensus 53 ~~gv~V-~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 115 (117)
T 2byg_A 53 DNSIYV-TKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKN-TSEVVYLKVGKPTT 115 (117)
T ss_dssp BCCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEEEEE
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 457776 79999999999 9 9999999999999999 66666666654 48899999999765
No 281
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Probab=98.25 E-value=3.4e-05 Score=82.38 Aligned_cols=163 Identities=16% Similarity=0.132 Sum_probs=93.1
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC------CeEEEEEEEEEcCC---
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN------REEIPVYPIYRDPV--- 116 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~------~~~~~a~vv~~d~~--- 116 (1109)
-|-+|.|.... .......++|.+|+++ +|||+||++. +.....+.+.. ...+..+-+..+|.
T Consensus 12 ~Pw~v~l~~~~------~~~~~~~CgGtLIs~~--~VLTAAHC~~-~~~~~~v~~G~~~~~~~~~~~~v~~i~~hp~y~~ 82 (230)
T 2hlc_A 12 FPYQAGLDITL------QDQRRVWCGGSLIDNK--WILTAAHCVH-DAVSVVVYLGSAVQYEGEAVVNSERIISHSMFNP 82 (230)
T ss_dssp STTEEEEEEEE------TTSCEEEEEEEEEETT--EEEECHHHHT-TEEEEEEEESCSBTTCCSEEEECSEEEECTTCBT
T ss_pred CCcEEEEEEEe------cCCCCEEEEEEEeeCC--EEEECHHHCC-CCcceEEEEeeeecCCCCeEEEEEEEEECCCCCC
Confidence 36678887542 1123567999999964 9999999998 45556666643 23445555555553
Q ss_pred ----CcEEEEEEcCCCcccccccCCCCCCc----cCCCCCEEEEEecCCCCC--CeEEEEEEEEecC--CCCCCCCCCcc
Q 001276 117 ----HDFGFFRYDPSAIQFLNYDEIPLAPE----AACVGLEIRVVGNDSGEK--VSILAGTLARLDR--DAPHYKKDGYN 184 (1109)
Q Consensus 117 ----~DlAlLk~~~~~~~~~~l~~l~l~~~----~~~~G~~V~~iG~p~g~~--~si~~G~vs~~~~--~~~~~~~~~~~ 184 (1109)
+||||||+++-.+. ..+.++.|... ....|+.+.+.|+..... .......+..+.. -...|......
T Consensus 83 ~~~~~DiALl~L~~~~~~-~~v~picLp~~~~~~~~~~~~~~~v~GwG~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~ 161 (230)
T 2hlc_A 83 DTYLNDVALIKIPHVEYT-DNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGIIV 161 (230)
T ss_dssp TTTBTCCEEEECSCCCCC-SSCCCCBCCCGGGGGCCCTTCEEEEEESSCCSSCCCBCEEEEEEEECHHHHHTTSCTTSSC
T ss_pred CCccccEEEEEecCCCcC-CcEeeeEcCCccccccccCCcEEEEEeeeecCCCCceeEEEEEEEeCHHHhhhhhCCCccc
Confidence 79999999832221 12344444432 246899999999864322 1222222222211 00112111111
Q ss_pred ccceeeEEEe----eccCCCCCCCceec-CCCcEEEEecccc
Q 001276 185 DFNTFYMQAA----SGTKGGSSGSPVID-WQGRAVALNAGSK 221 (1109)
Q Consensus 185 ~~~~~~iq~~----a~~~~G~SGgPv~n-~~G~vVGi~~~~~ 221 (1109)
+ ..+-+. ...-.|.|||||+- .++.++||.+.+.
T Consensus 162 ~---~~~Ca~~~~~~~~C~GDSGgPl~~~~~~~l~Gi~S~g~ 200 (230)
T 2hlc_A 162 E---STICGDTSDGKSPCFGDSGGPFVLSDKNLLIGVVSFVS 200 (230)
T ss_dssp T---TEEEECCTTSCBCCTTCTTCEEEEGGGTEEEEEEEECC
T ss_pred C---CeEEecCCCCCCcCCCCCCCeeEECcCCEEEEEEEEeC
Confidence 1 112221 23456999999984 4569999998754
No 282
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.24 E-value=2.3e-06 Score=81.06 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=52.5
Q ss_pred cEEEEEecCCChhhhcCC-CCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1009 GVYVARWCHGSPVHRYGL-YALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL-~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
+++|..|.++|||+++|| ++||.|++|||+++. +++++.+.++.. +..+.|+ +.|+++.
T Consensus 49 gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~--~~~v~l~-v~r~~~~ 110 (113)
T 1va8_A 49 SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM--HGTLTFV-LIPSSGP 110 (113)
T ss_dssp SEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHC--CEEEEEE-EECCCCC
T ss_pred CEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEECCcc
Confidence 789999999999999999 999999999999999 788999999874 4578888 6777753
No 283
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.24 E-value=1e-06 Score=81.89 Aligned_cols=60 Identities=25% Similarity=0.412 Sum_probs=50.6
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCC-CCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGV-DKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~-g~~v~l~v~R~g~ 356 (1109)
..+++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++.... |+.|+|+|.|++.
T Consensus 33 ~~~~~V-~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 97 (103)
T 1uep_A 33 GQPILI-GAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL 97 (103)
T ss_dssp TSCCBE-EEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CCCeEE-EEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCCC
Confidence 356666 79999999999 9 99999999999999965 777777776543 8899999999764
No 284
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=98.24 E-value=1.8e-06 Score=79.42 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=48.7
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEEE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGISM 358 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~~~ 358 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++.++ .++...+.. .++.+.|+|.|++...
T Consensus 30 ~gv~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~~~ 93 (98)
T 2opg_A 30 GAIII-HEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQ-TPQRVRLTLYRDEAPY 93 (98)
T ss_dssp CSEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEECSSCC
T ss_pred CCEEE-EEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcCCCCC
Confidence 46666 79999999999 9 999999999999999885 444444443 4588999999988654
No 285
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=98.23 E-value=2.4e-06 Score=77.61 Aligned_cols=59 Identities=31% Similarity=0.419 Sum_probs=47.7
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+. .++..++. ..++.+.|+|.|.+.
T Consensus 28 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R~~~ 90 (92)
T 2qg1_A 28 DTGVFV-SDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLK-CSLGTVTLEVGRIST 90 (92)
T ss_dssp SCSCEE-EEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-HCCSEEEEEEECCCC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEcccc
Confidence 467777 79999999999 9 999999999999999875 34444443 357889999999763
No 286
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.23 E-value=1e-06 Score=81.56 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=50.2
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++.. +..++|+ +.|++.
T Consensus 37 ~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~--~~~v~l~-v~R~~~ 96 (100)
T 1whd_A 37 PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC--PSEIILL-VWRVSG 96 (100)
T ss_dssp SCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHC--SSEEEEE-EEECCS
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEECCC
Confidence 6789999999999999999999999999999994 69999999874 3458888 677654
No 287
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.23 E-value=6.7e-07 Score=79.58 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=49.3
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeC
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLN 1067 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rd 1067 (1109)
+++|..|.++|||+++||++||.|++|||+++.++ +++.+.++.. ++.++|+ +.|+
T Consensus 24 ~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~-v~R~ 81 (83)
T 2kv8_A 24 PCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKC--SGVLHMV-IAEG 81 (83)
T ss_dssp SCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTC--SSCEEEE-EECC
T ss_pred CeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCeEEEE-EEcC
Confidence 67999999999999999999999999999999999 8999888763 4568888 5654
No 288
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.23 E-value=1.6e-06 Score=82.67 Aligned_cols=58 Identities=22% Similarity=0.189 Sum_probs=52.9
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeC--CCHHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v--~~l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++| |++||.|++|||+++ .+++++.+++++ .++.++|+ +.|++.
T Consensus 43 ~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~r~~~ 103 (117)
T 1v62_A 43 VITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLAS--ISEKVRLE-ILPVPQ 103 (117)
T ss_dssp EEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHS--CSSEEEEE-ECCBTT
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh--CCCeEEEE-EEECCC
Confidence 58999999999999999 999999999999999 779999999995 58899998 677665
No 289
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A
Probab=98.23 E-value=2.7e-05 Score=82.85 Aligned_cols=180 Identities=16% Similarity=0.188 Sum_probs=99.2
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec---------CCeEEEEEEEEEcCC
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV 116 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~---------~~~~~~a~vv~~d~~ 116 (1109)
-|-+|.|.... .......++|.+|+++ +|||+||++. ....+.+. ....+.++-+..+|.
T Consensus 12 ~Pw~v~l~~~~------~~~~~~~CgGtLI~~~--~VLTAAHC~~---~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~ 80 (227)
T 3fzz_A 12 RPYMAYYEFLK------VGGKKMFCGGFLVRDK--FVLTAAHCKG---RSMTVTLGAHNIKAKEETQQIIPVAKAIPHPD 80 (227)
T ss_dssp STTEEEEEEEC------SSSCEEEEEEEEEETT--EEEECTTCCC---EEEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred cCCEEEEEEEe------CCCceeEEEEEEEeCC--EEEECcccCC---CCcEEEEcccccCCCCCCceEEEEEEEEECcC
Confidence 36678887642 1222567999999964 9999999986 34555553 124566666777776
Q ss_pred -------CcEEEEEEcCCCcccccccCCCC--CCccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCCCC
Q 001276 117 -------HDFGFFRYDPSAIQFLNYDEIPL--APEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHYKK 180 (1109)
Q Consensus 117 -------~DlAlLk~~~~~~~~~~l~~l~l--~~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~--~~~~~~ 180 (1109)
+||||||++..-.....+.++.| ....+..|+.+.+.|+..... .......+.-+... ...+..
T Consensus 81 y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~ 160 (227)
T 3fzz_A 81 YNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQS 160 (227)
T ss_dssp CBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSTTSCCCSBCEEEEEEBCCHHHHHHHHTT
T ss_pred CCCCCCcCCEEEEEECCcCCCCCcccccCCCCcccCCCCCCEEEEEECCcccCCCCCCCeeeEEEeeeecHHHhhhhhcc
Confidence 69999999753211112333333 344557899999999863211 11222222222110 000000
Q ss_pred CCccccceeeEEE-----eeccCCCCCCCceecCCCcEEEEeccccCCC-CCccccchHHHHHHHH
Q 001276 181 DGYNDFNTFYMQA-----ASGTKGGSSGSPVIDWQGRAVALNAGSKSSS-ASAFFLPLERVVRALR 240 (1109)
Q Consensus 181 ~~~~~~~~~~iq~-----~a~~~~G~SGgPv~n~~G~vVGi~~~~~~~~-~~~falP~~~i~~~l~ 240 (1109)
.+.. ...+-+ ....-.|.|||||+- ++.++||.+.+.... ..+.+.-+...+..++
T Consensus 161 -~~~~--~~~~Ca~~~~~~~~~C~gDsGgPl~~-~~~l~Gi~S~g~~c~~~p~vyt~V~~~~~WI~ 222 (227)
T 3fzz_A 161 -SYNR--ANEICVGDSKIKGASFEEDSGGPLVC-KRAAAGIVSYGQTDGSAPQVFTRVLSFVSWIK 222 (227)
T ss_dssp -TCCT--TTEEEECCCSSCBCCTTTTTTCEEEE-TTEEEEEEEECCTTCSSSEEEEEGGGTHHHHH
T ss_pred -ccCC--CceEEEeCCCCCCcccccCCccceEE-ecCCcEEEEECCCCCCCCeEEEEhHHhHHHHH
Confidence 0000 011211 123456899999996 569999998765332 2334444444444443
No 290
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=98.23 E-value=2.2e-06 Score=81.76 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=49.8
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++. ++.++..++... ++.++|+|.|+|+.
T Consensus 53 ~gv~V-~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~g~~ 115 (117)
T 2fne_A 53 LPIYV-KTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT-KGTVTLMVLSSDET 115 (117)
T ss_dssp EEEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSSEEEEEEECSCE
T ss_pred CCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCcc
Confidence 46666 79999999999 8 9999999999999999 677777777553 45699999998864
No 291
>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*
Probab=98.23 E-value=3.3e-05 Score=82.19 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=90.7
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec---------CCeEEEEEEEEEcCC-
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV- 116 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~---------~~~~~~a~vv~~d~~- 116 (1109)
|-+|.|.... ......++|.+|+++ +|||+||++.. ...+.+. ....+.++-+..+|.
T Consensus 13 Pw~v~l~~~~-------~~~~~~CgGsLI~~~--~VLTAAHC~~~---~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y 80 (224)
T 1cgh_A 13 PYMAYLQIQS-------PAGQSRCGGFLVRED--FVLTAAHCWGS---NINVTLGAHNIQRRENTQQHITARRAIRHPQY 80 (224)
T ss_dssp TTEEEEEEST-------TTTSCEEEEEEEETT--EEEECGGGCCS---SEEEEESCSBTTSCCTTCEEEEEEEEEECTTC
T ss_pred CcEEEEEEEC-------CCCCeEEEEEEeeCC--EEEEhHHhCCC---CCEEEEeecccCCCCCccEEEEEEEEEcCCCC
Confidence 5677776531 112468999999964 99999999984 2444443 134566666667765
Q ss_pred ------CcEEEEEEcCCC-cccccccCCCCC--CccCCCCCEEEEEecCCCCC----CeEEEEEEEEecCC--CCCCCCC
Q 001276 117 ------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK----VSILAGTLARLDRD--APHYKKD 181 (1109)
Q Consensus 117 ------~DlAlLk~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~----~si~~G~vs~~~~~--~~~~~~~ 181 (1109)
+||||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+.-+... ...|+.
T Consensus 81 ~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~l~~~~~~i~~~~~C~~~~~~- 158 (224)
T 1cgh_A 81 NQRTIQNDIMLLQLSRRVRRN-RNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGS- 158 (224)
T ss_dssp BTTTTBSCCEEEEESSCCCCB-TTBCCCBCCCTTCCCCTTCEEEEEESCCSSSSCCCSBCEEEEEEBCCHHHHHHHCTT-
T ss_pred CCCCCcCCEEEEEECCCCcCC-CceEeeECCCCCCCCCCCCEEEEEECCcCCCCCCCCcceEEEEEeeCHHHHHHHhCc-
Confidence 599999997542 11 123344443 33457899999999864321 12222222222110 001110
Q ss_pred CccccceeeEEEe-----eccCCCCCCCceecCCCcEEEEecccc
Q 001276 182 GYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 182 ~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
+.. ...|-+. ...-.|.|||||+- +|.++||.+.+.
T Consensus 159 -~~~--~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g~ 199 (224)
T 1cgh_A 159 -YDP--RRQICVGDRRERKAAFKGDSGGPLLC-NNVAHGIVSYGK 199 (224)
T ss_dssp -CCT--TTEEEECCTTSCCBCCTTCTTCEEEE-TTEEEEEEEECC
T ss_pred -CCC--cceEeeccCCCCCeEeeCCCccceEE-ccEEEEEEEEEC
Confidence 100 0012221 23456999999996 579999998765
No 292
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=98.23 E-value=3e-06 Score=78.47 Aligned_cols=56 Identities=21% Similarity=0.383 Sum_probs=49.3
Q ss_pred ceEEEEEecCCCcccc--CCCCCCEEEEECCEEe--CChhHHHHHHhcC-CCCeEEEEEEEC
Q 001276 298 GLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVI--TQFLKLETLLDDG-VDKNIELLIERG 354 (1109)
Q Consensus 298 G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v--~~~~~l~~~l~~~-~g~~v~l~v~R~ 354 (1109)
+++| ..|.++|||++ ||++||+|++|||+++ .++.++..+|... .|+.++|+|.|.
T Consensus 38 ~~~V-~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 98 (101)
T 2yt7_A 38 TAVI-ANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98 (101)
T ss_dssp CEEE-EEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 5655 79999999998 5999999999999999 8899999998664 789999999874
No 293
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=98.23 E-value=9.8e-07 Score=84.54 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=52.6
Q ss_pred cEEEEEecCCChhhhc-CCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeEE
Q 001276 1009 GVYVARWCHGSPVHRY-GLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKPR 1071 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~-GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~~ 1071 (1109)
+++|..|.++|||+++ ||++||.|++|||+++.+ ++++...++.. +..++|+ +.|++...
T Consensus 54 ~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~--~~~v~l~-v~r~g~~~ 116 (120)
T 2iwo_A 54 PIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA--SGSIEMQ-VVAGGDVS 116 (120)
T ss_dssp EEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHC--CSEEEEE-EECCTTSS
T ss_pred CEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEECCccc
Confidence 7899999999999999 999999999999999987 68888888874 5569998 78887643
No 294
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.22 E-value=2.6e-06 Score=77.07 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=46.9
Q ss_pred EEEEecCCChhhhcCCCCCCeEEEECCeeC--CCHHHHHHHHHhCCCCceEEEEE
Q 001276 1011 YVARWCHGSPVHRYGLYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVRT 1063 (1109)
Q Consensus 1011 ~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v--~~l~~f~~~l~~~~~~~~v~l~~ 1063 (1109)
+|++|.++|||+++||++||.|++|||+++ .+++++.+.+++ .++.+.|++
T Consensus 34 ~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~--~g~~v~l~v 86 (90)
T 1y7n_A 34 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN--AVGEIHMKT 86 (90)
T ss_dssp EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHH--CCEEEEEEE
T ss_pred EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEEE
Confidence 799999999999999999999999999999 589999999996 378888883
No 295
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=98.22 E-value=1.6e-06 Score=81.43 Aligned_cols=61 Identities=26% Similarity=0.411 Sum_probs=51.0
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcC--CCCeEEEEEEECCEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDG--VDKNIELLIERGGIS 357 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~--~g~~v~l~v~R~g~~ 357 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++... .+..|+|+|.|.++.
T Consensus 32 ~~gv~V-~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~~ 98 (108)
T 3cbz_A 32 DGGIYI-GSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGG 98 (108)
T ss_dssp CCEEEE-EEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC-
T ss_pred CCCEEE-EEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCCCC
Confidence 466666 79999999999 9 99999999999999999 88888888654 445699999997653
No 296
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=2e-06 Score=78.11 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=48.0
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeC-CCHHHHHHHHHhCCCCceEEEE
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRT-PDLEAFVNVTKEIEHGEFVRVR 1062 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v-~~l~~f~~~l~~~~~~~~v~l~ 1062 (1109)
+++|..|.++|||+++| |++||.|++|||+++ .+++++.+.++.. ++.+.|+
T Consensus 30 ~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v~~~~~~~~~~l~~~--~~~v~l~ 83 (91)
T 2e7k_A 30 ELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRNA--SGSVILK 83 (91)
T ss_dssp SEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCHHHHHHHHHTC--CSSBCEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCHHHHHHHHHcC--CCeEEEE
Confidence 78999999999999987 999999999999999 9999999999973 5678887
No 297
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Probab=98.22 E-value=9.6e-05 Score=79.45 Aligned_cols=183 Identities=15% Similarity=0.134 Sum_probs=102.0
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC-CeEEEEEecC-----------CeEEEEEEEEE
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFVN-----------REEIPVYPIYR 113 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~-~~~~~v~~~~-----------~~~~~a~vv~~ 113 (1109)
-|-+|.|... ....++|.+|+++ +|||+||++... ...+.+.+.. ...+..+-+.+
T Consensus 11 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~~~~ 78 (240)
T 1si5_H 11 IGWMVSLRYR----------NKHICGGSLIKES--WVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVY 78 (240)
T ss_dssp CTTEEEEEES----------SSEEEEEEEEETT--EEEEEGGGCSSSCGGGEEEEESCSBSSCSTTTTTCEEEEEEEEEE
T ss_pred CCeEEEEEeC----------CCeEEEEEEeeCC--EEEEhHHhcCCCCCccEEEEEeeeecCCCCCCCcceEEEEEEEEc
Confidence 3567777652 2568999999964 999999999743 2445665532 23455554556
Q ss_pred cC-CCcEEEEEEcCCC-cccccccCCCCC--CccCCCCCEEEEEecCCCCC----CeEEEEEEEEecC--CCCCCCCC-C
Q 001276 114 DP-VHDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK----VSILAGTLARLDR--DAPHYKKD-G 182 (1109)
Q Consensus 114 d~-~~DlAlLk~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~----~si~~G~vs~~~~--~~~~~~~~-~ 182 (1109)
+| .+|||||+++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+.-+.. -...|+.. .
T Consensus 79 ~p~~~DiALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~ 157 (240)
T 1si5_H 79 GPEGSDLVLMKLARPAVLD-DFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVT 157 (240)
T ss_dssp CSSTTCEEEEEESSCCCCS-SSCCCCBCCCTTCCCCTTCEEEEEESSCCCCSSCCCBCEEEEEEEECGGGTCC-------
T ss_pred CCCCCcEEEEEECCccccC-CceeccCcCCcCCCCCCCCEEEEEEeCCCCCCCCCCeeEEEEEeecCHHHhhhhhcCCcc
Confidence 65 6899999998542 11 123333343 34567899999999864321 1222222322221 11111110 0
Q ss_pred ccccceeeEEE-----eeccCCCCCCCceecCC-C--cEEEEeccccCC---CCCccccchHHHHHHHHHHHh
Q 001276 183 YNDFNTFYMQA-----ASGTKGGSSGSPVIDWQ-G--RAVALNAGSKSS---SASAFFLPLERVVRALRFLQE 244 (1109)
Q Consensus 183 ~~~~~~~~iq~-----~a~~~~G~SGgPv~n~~-G--~vVGi~~~~~~~---~~~~falP~~~i~~~l~~l~~ 244 (1109)
..+ ..|=+ ....-.|.|||||+-.. | .++||.+.+..- ...+.+..+...+..+++..+
T Consensus 158 ~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~ 227 (240)
T 1si5_H 158 LNE---SEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIIL 227 (240)
T ss_dssp CCT---TEEEEECSSSCCBCCTTCTTCEEEEECSSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHS
T ss_pred CCC---CEEeecCCCCCCEeccCCCCCcEEEEECCcEEEEEEEEECCCCCCCCCCcEEEEHHHHHHHHHHHHh
Confidence 111 11222 12345699999998543 3 799999876532 223444555555666655443
No 298
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=98.22 E-value=2e-06 Score=79.51 Aligned_cols=59 Identities=22% Similarity=0.405 Sum_probs=48.6
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.++ .++..++.. .|+.+.|+|.|+++
T Consensus 36 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 98 (101)
T 2jik_A 36 DSGIYV-SRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHRLE 98 (101)
T ss_dssp BCCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHT-CCSEEEEEEEEESC
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 467776 79999999999 9 999999999999999886 444444443 58899999999765
No 299
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=98.22 E-value=2.3e-06 Score=77.61 Aligned_cols=58 Identities=24% Similarity=0.249 Sum_probs=49.7
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ .+++...++. .++.++|+ +.|.+
T Consensus 29 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~R~~ 89 (92)
T 2qg1_A 29 TGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKC--SLGTVTLE-VGRIS 89 (92)
T ss_dssp CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHH--CCSEEEEE-EECCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEccc
Confidence 378999999999999999 99999999999999976 4777777776 36779998 66654
No 300
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...
Probab=98.22 E-value=1.4e-05 Score=85.13 Aligned_cols=164 Identities=14% Similarity=0.187 Sum_probs=93.1
Q ss_pred ccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec---------CCeEEEEEEEEEcCC-------CcEEEEEEcCCCcc
Q 001276 67 ASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV-------HDFGFFRYDPSAIQ 130 (1109)
Q Consensus 67 ~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~---------~~~~~~a~vv~~d~~-------~DlAlLk~~~~~~~ 130 (1109)
...++|.+|+++ +|||+||++. . ...+.+. +...+.++-+..+|. +||||||++..-..
T Consensus 22 ~~~CgGsLIs~~--~VLTAAHC~~-~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~ 96 (223)
T 3mfj_A 22 YHFCGGSLINSQ--WVVSAAHCYK-S--GIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASL 96 (223)
T ss_dssp SEEEEEEEEETT--EEEECGGGCC-S--SCEEEESCSSTTSCCSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCC
T ss_pred CeEEEEEEecCC--EEEEhHHhcC-C--CcEEEECCceecccCCCcEEEEeeEEEECCCCCCCCCCCCEEEEEeCCCccc
Confidence 467999999964 9999999995 2 2344442 234566666666664 69999999854211
Q ss_pred cccccCCCCCCccCCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCCccccceeeEEEe-----ecc
Q 001276 131 FLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDGYNDFNTFYMQAA-----SGT 197 (1109)
Q Consensus 131 ~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~~--~~~~~~~~~~~~~~~~iq~~-----a~~ 197 (1109)
...+.++.|.......|+.+.+.|+..... .......+.-+... ...|.. ...+ ..+-+. ...
T Consensus 97 ~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~ 172 (223)
T 3mfj_A 97 NSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG-QITS---NMFCAGYLEGGKDS 172 (223)
T ss_dssp BTTBCCCBCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT-TCCT---TEEEESCTTSSCBC
T ss_pred CCcEeeeECCCCCCCCCCEEEEEeeeccCCCCCcccchheEEEEEEeCHHHhhhhhcC-cCCC---CEEEccCCCCCCCc
Confidence 113455666666668899999999864321 11222222222110 000110 0111 122221 234
Q ss_pred CCCCCCCceecCCCcEEEEeccccCCC---CCccccchHHHHHHHH
Q 001276 198 KGGSSGSPVIDWQGRAVALNAGSKSSS---ASAFFLPLERVVRALR 240 (1109)
Q Consensus 198 ~~G~SGgPv~n~~G~vVGi~~~~~~~~---~~~falP~~~i~~~l~ 240 (1109)
-.|.|||||+- +|+++||.+.+..-. ..+.+.-+...+..++
T Consensus 173 C~GDSGgPL~~-~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~ 217 (223)
T 3mfj_A 173 CQGDSGGPVVC-SGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217 (223)
T ss_dssp CTTCTTCEEEE-TTEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHH
T ss_pred CCCCcccceEE-CCEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHH
Confidence 57999999996 689999998764321 2233444444444443
No 301
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.22 E-value=2.1e-06 Score=81.76 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=52.8
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
+++|..|.++|||+++| |++||.|++|||+++.+ ++++...++. .++.++|+ +.|++..
T Consensus 50 g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~~v~l~-v~R~~~~ 111 (117)
T 1ujd_A 50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ--QSGEAEIC-VRLDLNM 111 (117)
T ss_dssp EEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSC--CSSCEEEE-EESSCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc--CCCEEEEE-EEECCcc
Confidence 78999999999999999 99999999999999977 6889999987 47789998 7887753
No 302
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.21 E-value=1.3e-06 Score=82.02 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=54.1
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+++| |++||.|++|||+++. ++.++...++. .++.++|+ +.|++.+
T Consensus 42 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~~~~ 104 (108)
T 1q7x_A 42 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN--TGQVVHLL-LEKGQSP 104 (108)
T ss_dssp CCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHH--TTSEEEEE-EECCCCS
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCcc
Confidence 378999999999999999 9999999999999999 77899999987 37899998 7888764
No 303
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=98.21 E-value=1.4e-06 Score=84.35 Aligned_cols=62 Identities=26% Similarity=0.370 Sum_probs=55.0
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEEEE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGISMT 359 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~~~ 359 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++....++.+.+++.|+|+...
T Consensus 33 ~gv~V-~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~~~~ 97 (128)
T 2kjd_A 33 PGQFI-RSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFF 97 (128)
T ss_dssp CSEEE-EEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHHHHHH
T ss_pred CCEEE-EEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCCcceE
Confidence 47776 79999999999 999999999999999999 8999998877777888999999887654
No 304
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.21 E-value=1.8e-06 Score=81.89 Aligned_cols=59 Identities=24% Similarity=0.297 Sum_probs=53.4
Q ss_pred cEEEEEecCCChhhh-cCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1009 GVYVARWCHGSPVHR-YGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~-~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
+++|..|.++|||++ +||++||.|++|||+++.+ ++++.+++++ .++.+.|+ +.|++..
T Consensus 44 ~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~r~~~~ 105 (114)
T 1uew_A 44 PHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD--AGLSVTLR-IIPQEEL 105 (114)
T ss_dssp SCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH--TTTEEEEE-ECCCSCC
T ss_pred CeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCcC
Confidence 459999999999999 9999999999999999999 6999999997 58899998 6777653
No 305
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Probab=98.21 E-value=2.8e-05 Score=82.73 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=91.5
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec----------CCeEEEEEEEEEcCC
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV----------NREEIPVYPIYRDPV 116 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~----------~~~~~~a~vv~~d~~ 116 (1109)
|-+|.|... ....++|.+|+++ +|||+||++.. . ..+.+. +...+.+.-+..+|.
T Consensus 13 Pw~v~l~~~----------~~~~CgGsLIs~~--~VLTAAHC~~~-~--~~v~~g~~~~~~~~~~~~~~~~v~~~~~Hp~ 77 (223)
T 2bdg_A 13 PWQAALVME----------NELFCSGVLVHPQ--WVLSAAHCFQN-S--YTIGLGLHSLEADQEPGSQMVEASLSVRHPE 77 (223)
T ss_dssp TTEEEEECS----------SCEEEEEEEEETT--EEEECGGGCCS-S--EEEEESCSBSCGGGCTTCEEEEEEEEEECTT
T ss_pred CcEEEEeeC----------CCEEEEEEEecCC--EEEEhHHhCCC-C--eEEEEeeeecCCCCCCCcEEEEEEEEEeCCC
Confidence 556777541 2467999999964 99999999973 2 333332 124566666666664
Q ss_pred -------CcEEEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCC----CeEEEEEEEEecCC--CCCCCCCCc
Q 001276 117 -------HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK----VSILAGTLARLDRD--APHYKKDGY 183 (1109)
Q Consensus 117 -------~DlAlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~----~si~~G~vs~~~~~--~~~~~~~~~ 183 (1109)
+||||||++..-.....+.++.|....+..|+.+.+.|+..... .......+.-+... ...|.. .+
T Consensus 78 y~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~~ 156 (223)
T 2bdg_A 78 YNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTAGNSCLVSGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDP-LY 156 (223)
T ss_dssp TTSSTTCSCCEEEEESSCCCCCSSCCCCCBCSSCCCTTCEEEEEESCCCTTSCCCSBCEEEEEEBCCHHHHHHHSTT-TC
T ss_pred CCCCCCcCcEEEEEECCcccCCCceecccCCCCCCCCCCEEEEEeCcccCCCCCCCcceEEEEEEeCHHHhhhhhCC-CC
Confidence 69999999854211113455666666678899999999864322 11222222222110 000111 01
Q ss_pred cccceeeEEEe-----eccCCCCCCCceecCCCcEEEEecccc
Q 001276 184 NDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 184 ~~~~~~~iq~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
.+ ..|-+. ...-.|.|||||+- +|.++||.+.+.
T Consensus 157 ~~---~~~Ca~~~~~~~~~C~GDsGgPL~~-~~~l~Gi~S~g~ 195 (223)
T 2bdg_A 157 HP---SMFCAGGGQDQKDSCNGDSGGPLIC-NGYLQGLVSFGK 195 (223)
T ss_dssp CT---TEEEECCSTTCCBCCTTCTTCEEEE-TTEEEEEEEECC
T ss_pred CC---CeEeccCCCCCCCcCCCCCCchheE-ccEEEEEEEecC
Confidence 11 122221 23457999999996 579999998764
No 306
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=98.21 E-value=3.1e-06 Score=79.15 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=50.9
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
+++|..|.++|||+++||++||.|++|||+++. +++++...++. .++.+.|+ +.|.+
T Consensus 44 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~r~~ 102 (107)
T 3qe1_A 44 LQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRA--GEKELILT-VLSVE 102 (107)
T ss_dssp CEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHH--CSSEEEEE-EECSS
T ss_pred ceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCEEEEE-EEcCC
Confidence 567999999999999999999999999999999 88999999996 48889998 55544
No 307
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.21 E-value=2.1e-06 Score=80.14 Aligned_cols=59 Identities=32% Similarity=0.533 Sum_probs=50.1
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++... ++.+.|+|.|++.
T Consensus 37 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~ 99 (105)
T 1wha_A 37 DAGIFV-SRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLEREAG 99 (105)
T ss_dssp CCSCEE-EECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEEECCC
T ss_pred CCCEEE-EEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCC
Confidence 467777 79999999999 9 99999999999999988 66776666544 8889999999753
No 308
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.20 E-value=2.7e-06 Score=82.50 Aligned_cols=58 Identities=17% Similarity=0.325 Sum_probs=52.1
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeC--CCHHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v--~~l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
|++|+.|.++|||+++| |++||.|++|||+++ .+++++.+.++.. +..++|+ +.|+++
T Consensus 66 gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~--~~~v~l~-v~r~~~ 126 (128)
T 1nf3_C 66 GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIAN--SRNLIIT-VRPANQ 126 (128)
T ss_dssp EEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHT--TTSEEEE-EECCCC
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEECCc
Confidence 79999999999999999 899999999999999 8899999999863 5569998 677764
No 309
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=98.20 E-value=3.3e-06 Score=78.84 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=52.4
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++| |++||.|++|||+++. +++++...++. .++.++|+ +.|++.
T Consensus 38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~~~ 99 (106)
T 3axa_A 38 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR--TSSVVTLE-VAKQGA 99 (106)
T ss_dssp EEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT--CCSEEEEE-EECCCS
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCc
Confidence 489999999999999999 9999999999999998 47888888876 48899998 677765
No 310
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.20 E-value=3e-06 Score=81.54 Aligned_cols=60 Identities=30% Similarity=0.490 Sum_probs=51.7
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcC-CCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDG-VDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~-~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++. ++.++..+|... .|+.+.|+|.|++.
T Consensus 43 ~~gv~V-~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 107 (123)
T 1ueq_A 43 DEFLQV-KSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYP 107 (123)
T ss_dssp SCCCEE-EEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCC
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence 456776 79999999999 9 9999999999999998 567888888664 58999999999863
No 311
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.20 E-value=1.5e-06 Score=83.52 Aligned_cols=59 Identities=25% Similarity=0.360 Sum_probs=51.8
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcC-CCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDG-VDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~-~g~~v~l~v~R~g~ 356 (1109)
.+++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++... +|+.++|+|.|+++
T Consensus 45 ~~~~V-~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 108 (122)
T 1v5q_A 45 SPPLI-SYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVA 108 (122)
T ss_dssp SCCEE-EEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred CCcEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEECCc
Confidence 44555 79999999999 9 99999999999999988 99999988664 48999999999875
No 312
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=98.19 E-value=2.9e-06 Score=77.09 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=44.9
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEE
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVR 1062 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~ 1062 (1109)
++++|..|.++|||+++||++||.|++|||+++. +++++.+++++ ..++|+
T Consensus 35 ~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~----~~l~lt 87 (94)
T 3kzd_A 35 RRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ----PSLGLL 87 (94)
T ss_dssp CEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHS----SEEEEE
T ss_pred CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC----CeEEEE
Confidence 3799999999999999999999999999999999 47999998884 346665
No 313
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Probab=98.19 E-value=5.8e-06 Score=88.31 Aligned_cols=157 Identities=15% Similarity=0.151 Sum_probs=91.2
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC---------CeEEEEEEEEEcC-
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDP- 115 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~---------~~~~~a~vv~~d~- 115 (1109)
-|-+|.|... ....++|.+|++ .+|||+||++.. .....+.+.. ...+..+-+..+|
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLI~~--~~VLTAAHC~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~ 78 (226)
T 1azz_A 12 WPHQAALFID----------DMYFCGGSLISP--EWILTAAHCMDG-AGFVDVVLGAHNIREDEATQVTIQSTDFTVHEN 78 (226)
T ss_dssp STTEEEEEET----------TTEEEEEEEEET--TEEEECHHHHTT-CSCEEEEESCSBSSSCCTTCEEEEECCEEECTT
T ss_pred cCCEEEEEEC----------CcEEEEEEEecC--CEEEEhHHhcCC-CCceEEEEcceEcCCCCCccEEEEEEEEEECCC
Confidence 3567777641 246899999996 499999999984 4456666542 2344554455555
Q ss_pred ------CCcEEEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCC
Q 001276 116 ------VHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKD 181 (1109)
Q Consensus 116 ------~~DlAlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~~--~~~~~~~ 181 (1109)
.+||||||++..-.....+.++.|.......|+.+.+.|+..... .......+.-+... ...|+
T Consensus 79 y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~-- 156 (226)
T 1azz_A 79 YNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYG-- 156 (226)
T ss_dssp CBTTTTBSCCEEEECSSCCCCCSSSCCCBCCSSCCCTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHHHHHHHS--
T ss_pred CCCCCCCCceEEEEECCccccCCCcccccCCCCCCCCCCEEEEEeCCccCCCCCCCCchhEEeeEEEEChhHhhhhhC--
Confidence 379999999754211112345555544457899999999864321 11111112211110 00011
Q ss_pred CccccceeeEEEe----eccCCCCCCCceecCCCcEEEEecccc
Q 001276 182 GYNDFNTFYMQAA----SGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 182 ~~~~~~~~~iq~~----a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
...+ ..+-+. ...-.|.|||||+ .+|.++||.+.+.
T Consensus 157 ~~~~---~~~Ca~~~~~~~~C~GDSGgPL~-~~~~l~Gi~S~g~ 196 (226)
T 1azz_A 157 IVTD---GNICIDSTGGKGTCNGDSGGPLN-YNGLTYGITSFGA 196 (226)
T ss_dssp CCCT---TEEEECCTTTCBCCTTCTTCEEE-ETTEEEEEEEEEE
T ss_pred cCCC---ceEeecCCCCCccCCCCCCcceE-ECCEEEEEEEEEC
Confidence 0111 112221 2345699999999 4789999998765
No 314
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=98.19 E-value=3e-06 Score=77.41 Aligned_cols=59 Identities=32% Similarity=0.565 Sum_probs=47.9
Q ss_pred CCCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhHHH--HHHhcCCCCeEEEEEEECC
Q 001276 295 GETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLE--TLLDDGVDKNIELLIERGG 355 (1109)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l~--~~l~~~~g~~v~l~v~R~g 355 (1109)
...|++| ..|.++|||++||++||+|++|||+++.++.+.+ ..+. ..++.+.|+|.|+.
T Consensus 33 ~~~gv~V-~~V~~~spA~~gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R~~ 93 (95)
T 1mfg_A 33 DDDGIFV-TRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVREV 93 (95)
T ss_dssp TCCCEEE-EEECTTSTTTTTCCTTCEEEEETTEECTTCBHHHHHHHHH-HCCSEEEEEEEEEC
T ss_pred CCCCEEE-EEECCCCchhhCCCCCCEEEEECCEEcCCCCHHHHHHHhh-cCCCeEEEEEEeCC
Confidence 3467777 7999999999999999999999999998855444 3333 56889999999864
No 315
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Probab=98.19 E-value=5.6e-05 Score=80.97 Aligned_cols=158 Identities=18% Similarity=0.226 Sum_probs=91.0
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC---------CeEEEEEEEEEcCC
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV 116 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~---------~~~~~a~vv~~d~~ 116 (1109)
-|-+|.|... ....++|.+|+++ +|||+||++.... ..+.+.. ...+.++-+..+|.
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~~~--~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~ 77 (234)
T 1orf_A 12 RPYMVLLSLD----------RKTICAGALIAKD--WVLTAAHCNLNKR--SQVILGAHSITREEPTKQIMLVKKEFPYPC 77 (234)
T ss_dssp STTEEEEECS----------SSCEEEEEEEETT--EEEECTTCCCCTT--CEEEESCSBSSSCCTTCEEECEEEEEECTT
T ss_pred CCeEEEEccC----------CceEEEEEEeeCC--EEEEchhcCCCCC--ceEEEeccccCcCCCceEEEEEEEEEcCCC
Confidence 3567777542 2467999999964 9999999997433 3444321 24566666666654
Q ss_pred -------CcEEEEEEcCCCcccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---C-CCCC
Q 001276 117 -------HDFGFFRYDPSAIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---D-APHY 178 (1109)
Q Consensus 117 -------~DlAlLk~~~~~~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~---~-~~~~ 178 (1109)
+||||||++........+.++.|. ...+..|+.+.+.|+..... .......+.-+.. . ...|
T Consensus 78 y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~ 157 (234)
T 1orf_A 78 YDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHY 157 (234)
T ss_dssp CCTTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEEECHHHHTSTTTT
T ss_pred CCCCCCCCCEEEEEECCcCccCCCeeeeecCCCcCCCCCCCEEEEEECCcCCCCCCccccceEeEEEeeCHHHcCCcccc
Confidence 699999998542111123334443 33457899999999753221 1222223332221 1 0112
Q ss_pred CCCCccccc-eeeEEEe-----eccCCCCCCCceecCCCcEEEEecccc
Q 001276 179 KKDGYNDFN-TFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 179 ~~~~~~~~~-~~~iq~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
. +.++. ..+|-+. ...-.|.|||||+- +|.++||.+.+.
T Consensus 158 ~---~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~ 202 (234)
T 1orf_A 158 N---FNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLC-EGVFRGVTSFGL 202 (234)
T ss_dssp T---TTTCCCTTEEEEECSSCCCBCCTTCTTCEEEE-TTEEEEEEEECC
T ss_pred c---cCCccCCCEEEecCCCCCCcCCCCCCCCeEEE-CCEEEEEEEEcC
Confidence 1 11100 0122221 23456999999996 689999998765
No 316
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=98.19 E-value=3.9e-06 Score=79.30 Aligned_cols=59 Identities=27% Similarity=0.398 Sum_probs=51.4
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
+++|..|.++|||+++| |++||.|++|||+++.+ +.++...++. .++.++|+ +.|++..
T Consensus 50 gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~~~~ 111 (112)
T 2r4h_A 50 DLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKN--GGRRVRLF-LKRGETS 111 (112)
T ss_dssp CEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHT--TTTEEEEE-EECCEEE
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCcc
Confidence 78999999999999999 99999999999999976 5788888876 47889998 6777653
No 317
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=1.8e-06 Score=80.32 Aligned_cols=60 Identities=27% Similarity=0.401 Sum_probs=49.5
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
..+++| ..|.++|||++ | |++||+|++|||+++.++ .++..++.. .|+.+.|+|.|+++.
T Consensus 37 ~~~v~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~~ 100 (104)
T 2djt_A 37 DTPLAV-RGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA-GGPQLHLVIRRPLSG 100 (104)
T ss_dssp ECCCEE-EEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH-TCSEEEEEECCCCCC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCCC
Confidence 356666 79999999999 9 999999999999999885 455555544 688999999998763
No 318
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.18 E-value=3.7e-06 Score=75.78 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=47.6
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeC--CCHHHHHHHHHhCCCCceEEEE
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVR 1062 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v--~~l~~f~~~l~~~~~~~~v~l~ 1062 (1109)
+++|.+|.++|||+++| |++||.|++|||+++ .+++++.+.++.. +..++|+
T Consensus 22 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~--~~~v~L~ 76 (88)
T 3e17_A 22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKS--RGKLQLV 76 (88)
T ss_dssp EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHT--TTEEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE
Confidence 78999999999999999 999999999999999 8999999999984 4467777
No 319
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Probab=98.18 E-value=3.1e-05 Score=82.57 Aligned_cols=179 Identities=14% Similarity=0.178 Sum_probs=98.0
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC---------CeEEEEEEEEEcCC
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV 116 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~---------~~~~~a~vv~~d~~ 116 (1109)
-|-+|.|.... ......++|.+|+++ +|||+||++.. ...+.+.. ...+.++-+..+|.
T Consensus 12 ~Pw~v~l~~~~-------~~~~~~CgGtLI~~~--~VLTAAHC~~~---~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 79 (227)
T 1iau_A 12 RPYMAYLMIWD-------QKSLKRCGGFLIRDD--FVLTAAHCWGS---SINVTLGAHNIKEQEPTQQFIPVKRPIPHPA 79 (227)
T ss_dssp STTEEEEEEEC-------SSCEEEEEEEEEETT--EEEECGGGCCS---EEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred cCcEEEEEEEC-------CCCceEEEEEEEcCC--EEEECHHhCCC---ceEEEEccccccCCCCccEEEEEEEEECCCC
Confidence 36678886531 111367999999964 99999999973 34555432 34566666666664
Q ss_pred -------CcEEEEEEcCCCcccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCCCC
Q 001276 117 -------HDFGFFRYDPSAIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHYKK 180 (1109)
Q Consensus 117 -------~DlAlLk~~~~~~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~--~~~~~~ 180 (1109)
+||||||++..-.....+.++.|. ...+..|+.+.+.|+..... .......+.-+... ...|..
T Consensus 80 y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~ 159 (227)
T 1iau_A 80 YNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRH 159 (227)
T ss_dssp CCTTTCTTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHHHTTT
T ss_pred CCCCCCCCCeEEEEECCcccCCCceecccCCCCCCCCCCCCEEEEEEcccCCCCCCcCceeeEeeeeeechHHhhhHhcc
Confidence 699999997542111123344443 33457899999999864321 12222222222110 001111
Q ss_pred CCccccceeeEEEe-----eccCCCCCCCceecCCCcEEEEeccccCC-CCCccccchHHHHHHHH
Q 001276 181 DGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSKSS-SASAFFLPLERVVRALR 240 (1109)
Q Consensus 181 ~~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~-~~~~falP~~~i~~~l~ 240 (1109)
.+.+ ...+-+. ...-.|.|||||+- +|.++||.+.+-.. ...+.+..+......++
T Consensus 160 -~~~~--~~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~gc~~~~~p~vyt~v~~~~~WI~ 221 (227)
T 1iau_A 160 -YYDS--TIELCVGDPEIKKTSFKGDSGGPLVC-NKVAQGIVSYGRNNGMPPRACTKVSSFVHWIK 221 (227)
T ss_dssp -TCCT--TTEEEESCTTSCCBCCTTCTTSEEEE-TTEEEEEEEEECTTSCSCEEEEEGGGGHHHHH
T ss_pred -ccCC--CcEEEeECCCCCCeeeecCCCchheE-eeEEEEEEeEecCCCCCCeEEEEHHHHHHHHH
Confidence 0110 0012221 23456999999996 57999999876221 12233344444444443
No 320
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B
Probab=98.18 E-value=3.5e-05 Score=83.19 Aligned_cols=182 Identities=14% Similarity=0.158 Sum_probs=102.3
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCC---------------CCeEEEEEecC--------
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKP---------------GPVVAEAMFVN-------- 102 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~---------------~~~~~~v~~~~-------- 102 (1109)
-|-+|.|... .....++|.+|+++ +|||+||++.. .+..+.+.+..
T Consensus 12 ~Pw~v~l~~~---------~~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~ 80 (251)
T 3gov_B 12 TPWIAMLSHL---------NGQPFCGGSLLGSS--WIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDE 80 (251)
T ss_dssp CTTEEEEEET---------TCCEEEEEEEETTT--EEEECGGGGBCCCCTTSCCCCGGGBCCGGGEEEEESCCBSSSCCS
T ss_pred cCeEEEEecc---------CCCeeEEEEEecCC--EEEECHhhccccccccccccccccccccccEEEEecceeccCCCC
Confidence 3567777542 12467999999864 99999999963 23345565532
Q ss_pred -CeEEEEEEEEEcCC-------CcEEEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCC----CeEEEEEEEE
Q 001276 103 -REEIPVYPIYRDPV-------HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK----VSILAGTLAR 170 (1109)
Q Consensus 103 -~~~~~a~vv~~d~~-------~DlAlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~----~si~~G~vs~ 170 (1109)
...+.++-+..+|. +|||||+++....-...+.++.|.......|+.+.+.|+..... .......+.-
T Consensus 81 ~~~~~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~picLp~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~~ 160 (251)
T 3gov_B 81 NEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQQEGAMVIVSGWGKQFLQRFPETLMEIEIPI 160 (251)
T ss_dssp SCEEECEEEEEECTTCBTTTTBTCCEEEEESSCCCCSSSCCCCBCCSSCCCTTCEEEEEECSCCTTSCCCSBCEEEEEEE
T ss_pred cceEeeeEEEEECCCCCCCCCCCCEEEEEeCCcccCCCceEEeECCCCCCCCCCEEEEEcCCCCCCCCCCccceEEeeEE
Confidence 34566666777776 69999999754211113445556566668899999999864321 1122222222
Q ss_pred ecCC--CCCCCC--CCccccceeeEEEe-----eccCCCCCCCceec---CCC--cEEEEeccccCCC---CCccccchH
Q 001276 171 LDRD--APHYKK--DGYNDFNTFYMQAA-----SGTKGGSSGSPVID---WQG--RAVALNAGSKSSS---ASAFFLPLE 233 (1109)
Q Consensus 171 ~~~~--~~~~~~--~~~~~~~~~~iq~~-----a~~~~G~SGgPv~n---~~G--~vVGi~~~~~~~~---~~~falP~~ 233 (1109)
+... ...|.. ....+ .+|=+. ..+-.|.|||||+- .+| .++||.+.+..-. ..+.+..+.
T Consensus 161 ~~~~~C~~~~~~~~~~~~~---~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~ 237 (251)
T 3gov_B 161 VDHSTCQKAYAPLKKKVTR---DMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIH 237 (251)
T ss_dssp ECHHHHHHHTTTTTCCCCT---TEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCSSCCEEEEETT
T ss_pred ECHHHhhhhhhhccCCCCC---CcEEecCCCCCCccCCCCCCCeEEeeeCCCCcEEEEEEEEECCCCCCCCCCEEEEEHH
Confidence 2110 000110 01111 112221 23457999999985 345 6999998765322 123444454
Q ss_pred HHHHHHHH
Q 001276 234 RVVRALRF 241 (1109)
Q Consensus 234 ~i~~~l~~ 241 (1109)
..+..+++
T Consensus 238 ~~~~WI~~ 245 (251)
T 3gov_B 238 HNKDWIQR 245 (251)
T ss_dssp TTHHHHHH
T ss_pred HhHHHHHH
Confidence 44555444
No 321
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0
Probab=98.18 E-value=5.9e-06 Score=88.09 Aligned_cols=183 Identities=19% Similarity=0.215 Sum_probs=97.2
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC-CeEEEEEecC--------CeEEEEEEEEEc--
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFVN--------REEIPVYPIYRD-- 114 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~-~~~~~v~~~~--------~~~~~a~vv~~d-- 114 (1109)
-|-+|.|.... ......++|.+|++ .+|||+||++... ...+.+.+.. +..+..+-+..+
T Consensus 11 ~Pw~v~l~~~~-------~~~~~~CgGtLI~~--~~VLTAAHC~~~~~~~~~~v~~g~~~~~~~~~~~~~~v~~i~~h~y 81 (228)
T 3h7o_A 11 VPWTVAVRTYP-------GEESLTCGGAILSQ--WFVLTAAHCVFDQKPETIVIQYESTNLWEDPGKSDPYVSHVYLSFY 81 (228)
T ss_dssp STTEEEEEECG-------GGCCEEEEEEESSS--SEEEECHHHHTTSCGGGCEEEESCSBTTTBCCEEECCEEEEEESSC
T ss_pred CCeEEEEeecC-------CCCceEeeeEEeeC--CEEEEcHHhcccCCCCcEEEEecccccccCCCceeeeEEEEEcccc
Confidence 46678887531 11123799999996 4999999999532 3344555431 123333333333
Q ss_pred ----CCCcEEEEEEcCCC-cccccccCCCCCC--ccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCCCC
Q 001276 115 ----PVHDFGFFRYDPSA-IQFLNYDEIPLAP--EAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHYKK 180 (1109)
Q Consensus 115 ----~~~DlAlLk~~~~~-~~~~~l~~l~l~~--~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~--~~~~~~ 180 (1109)
..+||||||++..- +....+.++.|.. ..+..|+.+.+.|+..... .......+.-+... ...|..
T Consensus 82 ~~~~~~~DIALl~L~~~v~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~ 161 (228)
T 3h7o_A 82 RQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGP 161 (228)
T ss_dssp BTTTTBTCCEEEEESSCCCCCSSSSCCCBCCCTTCCCCTTCEEEEEECCCSSCSCGGGGBCEEEEEEEECHHHHHHHHTT
T ss_pred CCCCccCCEEEEEECCcccccccccccccCCccccCCCCCCeeEEEEEecCCCCCCcccccccceeEEEcHHHHHHHhcC
Confidence 24799999997532 2111233444443 3378999999999864322 11222222222210 000111
Q ss_pred CCccccceeeEEEe---eccCCCCCCCceecCCCcEEEEeccccCCC--CCccccchHHHHHHHHH
Q 001276 181 DGYNDFNTFYMQAA---SGTKGGSSGSPVIDWQGRAVALNAGSKSSS--ASAFFLPLERVVRALRF 241 (1109)
Q Consensus 181 ~~~~~~~~~~iq~~---a~~~~G~SGgPv~n~~G~vVGi~~~~~~~~--~~~falP~~~i~~~l~~ 241 (1109)
....+ .++-+. ...-.|.|||||+. +++++||.+.+..-. ..+.+.-+...+..+++
T Consensus 162 ~~~~~---~~~Ca~~~~~~~C~GDsGgPl~~-~~~l~Gi~S~g~~c~~~~p~vyt~v~~~~~WI~~ 223 (228)
T 3h7o_A 162 IFLSL---QVFCAQKVGVSLESGDAGDPTVQ-QDTLVGVAAYFPKRPEGAPEVFTKVGSYVSWIQD 223 (228)
T ss_dssp SCCCS---SEEEEECTTCCCCGGGTTCEEEE-TTEEEEEECCCTTCCTTCCEEEEEGGGTHHHHHH
T ss_pred ccCCc---eEEecCCCCCcCCCCCCCCccee-cCeEEEEEeecCcCCCCCCcEEEEHHHHHHHHHH
Confidence 00111 112111 34456999999996 678999998764321 22334444444554444
No 322
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=98.18 E-value=4e-06 Score=76.29 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=49.8
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeC--CCHHHHHHHHHhCCCCceEEEEEEEeC
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVRTVHLN 1067 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v--~~l~~f~~~l~~~~~~~~v~l~~v~rd 1067 (1109)
+++|..+.++|||+++| |++||.|++|||+++ .+++++.+.++... ..++|+ +.+.
T Consensus 29 ~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~--~~v~l~-v~~~ 87 (93)
T 3o46_A 29 AIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ--GAITFK-IIPG 87 (93)
T ss_dssp CEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCC--EEEEEE-EECC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC--CeEEEE-EEeC
Confidence 78999999999999999 999999999999999 89999999999843 478888 4443
No 323
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*
Probab=98.18 E-value=4e-05 Score=81.74 Aligned_cols=156 Identities=16% Similarity=0.183 Sum_probs=90.8
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec----------CCeEEEEEEEEEcC
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV----------NREEIPVYPIYRDP 115 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~----------~~~~~~a~vv~~d~ 115 (1109)
-|-+|.|... .....++|.+|++ .+|||+||++.. . ..+.+. ....+.+.-+..+|
T Consensus 12 ~Pw~v~l~~~---------~~~~~CgGtLIs~--~~VLTAAHC~~~-~--~~v~~G~~~~~~~~~~~~~~~~v~~~~~Hp 77 (227)
T 2psx_A 12 QPWQAALLLR---------PNQLYCGAVLVHP--QWLLTAAHCRKK-V--FRVRLGHYSLSPVYESGQQMFQGVKSIPHP 77 (227)
T ss_dssp CTTEEEEEET---------TTEEEEEEEEEET--TEEEECGGGCCS-S--CEEEESCCBSSCCCCTTCEEEEEEEEEECT
T ss_pred CCCEEEEEec---------CCCceEEEEEEcC--CEEEEhHHcCCC-C--cEEEEeeeecccCCCCCcEEEEEEEEEeCC
Confidence 3567777642 1246799999996 499999999983 2 334332 12355555555665
Q ss_pred C-------CcEEEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCC
Q 001276 116 V-------HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKK 180 (1109)
Q Consensus 116 ~-------~DlAlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~~--~~~~~~ 180 (1109)
. +||||||++..-.....+.++.|....+..|+.+.+.|+..... .......+.-+... ...|..
T Consensus 78 ~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~ 157 (227)
T 2psx_A 78 GYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPR 157 (227)
T ss_dssp TCCSSSCTTCCEEEEESSCCCCCSSSCCCCBCSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEBCCHHHHHHHSTT
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCCceeeeECCCCCCCCCCEEEEEeCcccCCCCCCCCchheEEEEEecCHhHhhhhcCC
Confidence 3 69999999854211113455566666778999999999864321 11222222222110 000111
Q ss_pred CCccccceeeEEEe----eccCCCCCCCceecCCCcEEEEeccc
Q 001276 181 DGYNDFNTFYMQAA----SGTKGGSSGSPVIDWQGRAVALNAGS 220 (1109)
Q Consensus 181 ~~~~~~~~~~iq~~----a~~~~G~SGgPv~n~~G~vVGi~~~~ 220 (1109)
.+.+ ..|=+. ...-.|.|||||+- +|.++||.+.+
T Consensus 158 -~~~~---~~~Ca~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g 196 (227)
T 2psx_A 158 -QIDD---TMFCAGDKAGRDSCQGDSGGPVVC-NGSLQGLVSWG 196 (227)
T ss_dssp -TCCT---TEEEECCSTTCBCCTTCTTCEEEE-TTEEEEEEEEC
T ss_pred -CCCC---CEEcccCCCCCccCCCCCCcceee-CCEEEEEEeec
Confidence 1111 112221 23446999999996 57999999876
No 324
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=98.17 E-value=3.3e-06 Score=77.15 Aligned_cols=53 Identities=26% Similarity=0.501 Sum_probs=46.2
Q ss_pred EEEEEecCCCcccc-CCCCCCEEEEECCEEe--CChhHHHHHHhc--CCCCeEEEEEE
Q 001276 300 LVVDSVVPGGPAHL-RLEPGDVLVRVNGEVI--TQFLKLETLLDD--GVDKNIELLIE 352 (1109)
Q Consensus 300 lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v--~~~~~l~~~l~~--~~g~~v~l~v~ 352 (1109)
.+|..|.++|||++ ||++||+|++|||+++ .+|.++...+.. ..|+.+.|.|.
T Consensus 41 ~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~ 98 (101)
T 3qik_A 41 VVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVA 98 (101)
T ss_dssp EEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEe
Confidence 44579999999999 9999999999999998 499999998855 57888888775
No 325
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.17 E-value=4.7e-06 Score=78.82 Aligned_cols=59 Identities=22% Similarity=0.377 Sum_probs=50.1
Q ss_pred CceEEEEEecCCCcccc-CC-CCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 297 TGLLVVDSVVPGGPAHL-RL-EPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL-~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
.|++| ..|.++|||++ || ++||+|++|||+++. ++.++..++... ++.+.|+|.|+++.
T Consensus 48 ~gv~V-~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~~ 110 (113)
T 1va8_A 48 DSVII-SRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM-HGTLTFVLIPSSGP 110 (113)
T ss_dssp SSEEE-EEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CEEEEEEEECCCCC
T ss_pred CCEEE-EEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCcc
Confidence 56666 79999999999 99 999999999999999 677888877554 35799999998764
No 326
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=98.17 E-value=1.2e-06 Score=84.81 Aligned_cols=60 Identities=12% Similarity=0.262 Sum_probs=53.3
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhC-----CCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEI-----EHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~-----~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++.. +.++.|+|+ +.|++.
T Consensus 56 gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~-v~R~~~ 123 (127)
T 1wg6_A 56 GIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLV-ILRRSG 123 (127)
T ss_dssp EEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEE-EEECSC
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEE-EEeCCC
Confidence 78999999999999999 99999999999999988 67999999975 347899999 677664
No 327
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.17 E-value=1.8e-06 Score=82.16 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=53.1
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++.. ++.++|+ +.|++..
T Consensus 43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~--~~~v~l~-v~R~~~~ 105 (116)
T 2dm8_A 43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQT--PQKVRLV-VYRDEAH 105 (116)
T ss_dssp SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTC--CSEEEEE-EECCSSC
T ss_pred CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCeEEEE-EEeCCcc
Confidence 389999999999999999 99999999999999988 78999888863 4789998 6787764
No 328
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=98.17 E-value=3.2e-06 Score=81.92 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=52.7
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC---CHHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP---DLEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~---~l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
.+++|..|.++|||+++| |++||.|++|||+++. +++++.+.++. .++.++|+ +.|+.
T Consensus 54 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~--~~~~v~l~-v~r~~ 115 (128)
T 2db5_A 54 VDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ--TTGSLRLI-VAREP 115 (128)
T ss_dssp EEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH--CCSEEEEE-EEECC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc--CCCeEEEE-EEcCC
Confidence 389999999999999999 9999999999999998 99999999998 47889998 66664
No 329
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=98.16 E-value=3.3e-06 Score=77.28 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=51.2
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..+.++|||+++| |++||.|++|||+++.++ .++...++. .++.++|+ +.|+|.
T Consensus 33 ~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~r~g~ 94 (97)
T 2iwn_A 33 SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH--TGQTVLLT-LMRRGE 94 (97)
T ss_dssp CCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT--CCSEEEEE-EEEEEE
T ss_pred CCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEeCCC
Confidence 378999999999999999 999999999999999965 677777776 58889998 667664
No 330
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.16 E-value=2.4e-06 Score=81.67 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=52.5
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+++| |++||.|++|||+++. +++++.+.++..+ ++.+.+. +.|++..
T Consensus 42 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~-~~~~~l~-v~R~~~~ 105 (119)
T 1x6d_A 42 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAR-EPRQAVI-VTRKLTP 105 (119)
T ss_dssp SSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTT-SSSEEEE-EEECCCS
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CCeEEEE-EEcCCCc
Confidence 378999999999999999 9999999999999999 6899999998854 5556566 6777764
No 331
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=2.1e-06 Score=79.38 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=50.7
Q ss_pred cEEEEEecCCChhhhc-CCCCCCeEEEECCeeCCCH-HHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRY-GLYALQWIVEINGKRTPDL-EAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~-GL~~gD~I~~VNg~~v~~l-~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++ ||++||.|++|||+++.++ +++.+.++. .++.++|+ +.|++.
T Consensus 36 ~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~~~~v~l~-v~R~~~ 95 (100)
T 2edp_A 36 PLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQEALILIKG--SFRILKLI-VRRRNS 95 (100)
T ss_dssp EEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSCSHHHHHHHHT--CCSSCEEE-EEECCC
T ss_pred CeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccchHHHHHHHHHh--CCCeEEEE-EEeCCC
Confidence 6899999999999999 9999999999999999995 777888876 36788888 677775
No 332
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=98.16 E-value=3.4e-06 Score=78.35 Aligned_cols=59 Identities=20% Similarity=0.413 Sum_probs=47.5
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~v~R~g~ 356 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++.++.+.+... ....++.+.|+|.|+++
T Consensus 35 ~gv~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~ 96 (104)
T 3i4w_A 35 EGIFI-SFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 96 (104)
T ss_dssp CCEEE-EEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECHH
T ss_pred CCEEE-EEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECcc
Confidence 47776 79999999999 9 9999999999999997765544332 33468899999998753
No 333
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.15 E-value=1.8e-06 Score=83.74 Aligned_cols=61 Identities=26% Similarity=0.389 Sum_probs=53.7
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGISM 358 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~~ 358 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++.. .++.+.|+|.|+++..
T Consensus 45 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 109 (129)
T 2dmz_A 45 ASGIYV-KSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN-AGQVVHLTLVRRKTSS 109 (129)
T ss_dssp CCEEEE-EEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH-CCSSEEEEEEEESSSS
T ss_pred CCCEEE-EEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCccc
Confidence 456666 79999999999 9 99999999999999999 8888888866 8899999999988643
No 334
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.15 E-value=8.9e-07 Score=85.61 Aligned_cols=59 Identities=15% Similarity=0.308 Sum_probs=53.6
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++||++||.|++|||+++. +++++.++++. .++.++|+ +.|++.
T Consensus 61 ~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~--~g~~v~l~-v~r~~~ 121 (126)
T 2yuy_A 61 DTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQN--SDTTLELS-VMPKDS 121 (126)
T ss_dssp CCCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHHT--CTTEEEEE-CCCCCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCEEEEE-EEECCC
Confidence 4789999999999999999999999999999998 99999999997 38899998 677664
No 335
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...
Probab=98.15 E-value=5.3e-05 Score=81.65 Aligned_cols=166 Identities=13% Similarity=0.141 Sum_probs=92.6
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC--CeEEEEEecC---------CeEEEEEEEEEc
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFVN---------REEIPVYPIYRD 114 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~--~~~~~v~~~~---------~~~~~a~vv~~d 114 (1109)
-|-+|.|.... ........++|.+|+++ +|||+||++... .....+.+.. ...+.++-+..+
T Consensus 12 ~Pw~v~l~~~~-----~~~~~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~h 84 (247)
T 3mhw_U 12 QPWFAAIYRRH-----RGGSVTYVCGGSLISPC--WVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILH 84 (247)
T ss_dssp STTEEEEEEEC-----TTSCEEEEEEEEEEETT--EEEECGGGTTTSCCGGGEEEEESCCBSSSCCTTCEEEEEEEEEEC
T ss_pred CCCEEEEEEec-----CCCccceEEEEEEEeCC--EEEEcHHhCcCCCCCccEEEEeccccccCCCCCCEEEEEEEEEEC
Confidence 46678886542 11111467999999964 999999999642 2345555431 345666666666
Q ss_pred CC---------CcEEEEEEcCC----CcccccccCCCCC--CccCCCCCEEEEEecCCCCC------CeEEEEEEEEecC
Q 001276 115 PV---------HDFGFFRYDPS----AIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK------VSILAGTLARLDR 173 (1109)
Q Consensus 115 ~~---------~DlAlLk~~~~----~~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~ 173 (1109)
|. +|||||+++.. ......+.++.|. ...+..|+.+.+.|+..... .......+.-+..
T Consensus 85 p~y~~~~~~~~~DIALl~L~~~~~~~~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~ 164 (247)
T 3mhw_U 85 KDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISH 164 (247)
T ss_dssp TTCEEC-CCEESCCEEEEEECTTSCCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEEEECH
T ss_pred CCCCCCcCCCCCcEEEEEeCCccccccccCCcccccccCCCcCCCCCCCEEEEEecCCcCCCCcccchhheeeEEEEECh
Confidence 54 59999999754 1111123333333 35677899999999864321 1122222222221
Q ss_pred ---CCCCCCCCCccccceeeEEEe-----eccCCCCCCCceecC-CC--cEEEEecccc
Q 001276 174 ---DAPHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDW-QG--RAVALNAGSK 221 (1109)
Q Consensus 174 ---~~~~~~~~~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~-~G--~vVGi~~~~~ 221 (1109)
....+......+ .++=+. ...-.|.|||||+-. +| .++||.+.+.
T Consensus 165 ~~C~~~~~~~~~~~~---~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~l~Gi~S~g~ 220 (247)
T 3mhw_U 165 RECQQPHYYGSEVTT---KMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGR 220 (247)
T ss_dssp HHHTSTTTTGGGCCT---TEEEEECTTSCCBCCTTCTTCEEEEEETTEEEEEEEEEECS
T ss_pred HHhcCccccCCcCCC---CeEecCCCCCCCccCCCCCCCeEEEEECCCEEEEEEEEECC
Confidence 111010001111 122221 234579999999843 44 5999998764
No 336
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=98.15 E-value=4.2e-06 Score=79.85 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=49.6
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEE
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRT 1063 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~ 1063 (1109)
.+++|..|.++|||+++| |++||.|++|||+++. +++++.+.++.. ++.++|++
T Consensus 53 ~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~--~~~v~L~v 109 (118)
T 3b76_A 53 LPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT--SSSIVLKA 109 (118)
T ss_dssp CCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSC--CSEEEEEE
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEEE
Confidence 479999999999999999 9999999999999999 999999999973 67788884
No 337
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=98.15 E-value=3.4e-06 Score=79.65 Aligned_cols=60 Identities=25% Similarity=0.469 Sum_probs=48.8
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.++ .++...+.. .|+.+.|+|.|+++.
T Consensus 48 ~~gv~V-~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 111 (112)
T 2r4h_A 48 NMDLYV-LRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKN-GGRRVRLFLKRGETS 111 (112)
T ss_dssp TCCEEE-EEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEEECCEEE
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence 357666 79999999999 9 999999999999999875 444444443 688999999998753
No 338
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=98.15 E-value=1.9e-06 Score=80.23 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=48.2
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEE
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVR 1062 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~ 1062 (1109)
.+++|..|.++|||+++||++||.|++|||+++. +++++.+.++..+ + .++|+
T Consensus 48 ~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~-~v~l~ 102 (104)
T 2z17_A 48 MFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSG-N-LLTIE 102 (104)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHHHTT-T-EEEEE
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-C-cEEEE
Confidence 3889999999999999999999999999999999 8999999999853 4 77776
No 339
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.15 E-value=4e-06 Score=78.63 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=50.4
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEe
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHL 1066 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~r 1066 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++..+ +..++|+ +.|
T Consensus 44 ~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~~v~l~-v~R 103 (108)
T 2d92_A 44 SVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVP-PGLVHLG-ICS 103 (108)
T ss_dssp EEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSC-SEEEEEE-EEC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CCeEEEE-EEc
Confidence 479999999999999999 99999999999999965 899999999864 5678888 554
No 340
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=98.15 E-value=3.6e-06 Score=78.62 Aligned_cols=60 Identities=28% Similarity=0.473 Sum_probs=49.0
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++. ..|+.+.|+|.|+++.
T Consensus 37 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~~ 100 (106)
T 3axa_A 37 KLGIYV-KSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT-RTSSVVTLEVAKQGAI 100 (106)
T ss_dssp SEEEEE-EEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEECCCSS
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeCCcc
Confidence 456666 79999999999 9 99999999999999986 444444443 3788999999998753
No 341
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=98.15 E-value=3.1e-06 Score=77.44 Aligned_cols=59 Identities=20% Similarity=0.407 Sum_probs=48.6
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.++. ++..++.. .|+.+.|+|.|+|+
T Consensus 32 ~~~~~V-~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~g~ 94 (97)
T 2iwn_A 32 PSGIFV-KSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLLTLMRRGE 94 (97)
T ss_dssp CCCCEE-EEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEEEEE
T ss_pred CCCEEE-EEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 467776 79999999999 9 9999999999999999764 44444444 78899999999764
No 342
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=98.15 E-value=2.9e-06 Score=76.62 Aligned_cols=59 Identities=20% Similarity=0.393 Sum_probs=48.0
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEe--CChhHHHHHHhcC-CCCeEEEEEEECC
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVI--TQFLKLETLLDDG-VDKNIELLIERGG 355 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v--~~~~~l~~~l~~~-~g~~v~l~v~R~g 355 (1109)
..+++| ..|.++|||++ | |++||+|++|||+++ .++.++..++... .+..++|+|.|.+
T Consensus 26 ~~~~~V-~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~~ 89 (90)
T 2q9v_A 26 GEPIYI-GHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89 (90)
T ss_dssp TSCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEECC
T ss_pred CCCEEE-EEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecc
Confidence 356555 79999999999 9 999999999999999 5577777777543 3458999998864
No 343
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.15 E-value=2.6e-06 Score=79.90 Aligned_cols=60 Identities=27% Similarity=0.483 Sum_probs=50.5
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++. ++.++..++.. .|+.+.|+|.|++..
T Consensus 41 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~ 104 (108)
T 1q7x_A 41 HGGIYV-KAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLLEKGQSP 104 (108)
T ss_dssp SCCCBE-EEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHH-TTSEEEEEEECCCCS
T ss_pred CCCEEE-EEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence 467776 79999999999 9 9999999999999998 56666666654 488999999998754
No 344
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Probab=98.14 E-value=3e-05 Score=82.61 Aligned_cols=143 Identities=17% Similarity=0.221 Sum_probs=84.8
Q ss_pred cEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC-------CeEEEEEEEEEcCC-------CcEEEEEEcCCCccccc
Q 001276 68 SYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN-------REEIPVYPIYRDPV-------HDFGFFRYDPSAIQFLN 133 (1109)
Q Consensus 68 ~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~-------~~~~~a~vv~~d~~-------~DlAlLk~~~~~~~~~~ 133 (1109)
..++|.+|+++ +|||+||++. . ...+.+.. ...+.++-+..+|. +||||||++..-.....
T Consensus 24 ~~CgGtLI~~~--~VLTAAHC~~-~--~~~v~~G~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~~~~~ 98 (224)
T 2qxi_A 24 LHCGGVLVNER--WVLTAAHCKM-N--EYTVHLGSDTLGDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSM 98 (224)
T ss_dssp EEEEEEEEETT--EEEECGGGCC-S--CEEEEESCSBTTCTTSEEEEECEEEECTTCCTTTCTTCCEEEECSSCCCCBTT
T ss_pred eEEEEEEecCC--EEEEhHHcCC-C--CcEEEEeeeecCCCccEEEEEEEEEECCCCCCCCCcCcEEEEEeCCCCcCCCc
Confidence 37999999964 9999999995 2 34555432 34566666666664 69999999754211113
Q ss_pred ccCCCCCCccCCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCCccccceeeEEEe-----eccCCC
Q 001276 134 YDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDGYNDFNTFYMQAA-----SGTKGG 200 (1109)
Q Consensus 134 l~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~~--~~~~~~~~~~~~~~~~iq~~-----a~~~~G 200 (1109)
+.++.|.......|+.+.++|+..... .......+.-+... ...|.. ...+ ..|-+. ...-.|
T Consensus 99 v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~C~G 174 (224)
T 2qxi_A 99 VKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKD-LLEN---SMLCAGIPDSKKNACNG 174 (224)
T ss_dssp BCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECHHHHHHHHGG-GCCT---TEEEEECTTCCCBCCTT
T ss_pred eeeEECCCCCCCCCCEEEEEeCCccCCCCCCCChhheEEEeeecCHHHhhHHhcC-cCCC---CeEEecCCCCCCccCCC
Confidence 455666665667899999999864321 11222222222110 000110 0011 112221 234579
Q ss_pred CCCCceecCCCcEEEEeccc
Q 001276 201 SSGSPVIDWQGRAVALNAGS 220 (1109)
Q Consensus 201 ~SGgPv~n~~G~vVGi~~~~ 220 (1109)
.|||||+- +|+++||.+.+
T Consensus 175 DSGgPL~~-~~~l~Gi~S~g 193 (224)
T 2qxi_A 175 DSGGPLVC-RGTLQGLVSWG 193 (224)
T ss_dssp CTTCEEEE-TTEEEEEEEEC
T ss_pred CccccEEE-CCEEEEEEEeC
Confidence 99999996 68999999876
No 345
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.14 E-value=3.5e-06 Score=79.44 Aligned_cols=59 Identities=27% Similarity=0.323 Sum_probs=52.0
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
+++|..|.++|||+++| |++||.|++|||+++. +++++.+.++. .++.++|+ +.|++..
T Consensus 39 g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~--~g~~v~l~-v~R~~~~ 100 (111)
T 2dlu_A 39 GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN--CGNSVRML-VARDPAG 100 (111)
T ss_dssp SBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHH--HCSEEEEE-EEESCTT
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh--CCCeEEEE-EEeCCCC
Confidence 78999999999999999 9999999999999999 46899999987 37789998 6776643
No 346
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=98.14 E-value=6e-06 Score=86.02 Aligned_cols=72 Identities=26% Similarity=0.468 Sum_probs=58.3
Q ss_pred CCCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEE---CCEEEEEEEEeecC
Q 001276 295 GETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIER---GGISMTVNLVVQDL 367 (1109)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~v~R---~g~~~~~~v~l~~~ 367 (1109)
...|++| ..|.++|||++||++||+|++|||+++.+..+.+... ....+..+.|+|.| +|+..++++.+...
T Consensus 22 ~~~g~~V-~~v~~~spA~~gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~G~~~~~~v~~~~~ 97 (195)
T 2qbw_A 22 DDDGIFV-TRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKD 97 (195)
T ss_dssp TCCSEEE-EEECTTSTTTTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEEECSSSCEEEEEEEEECC
T ss_pred CCCCEEE-EEECCCChHHhCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEcCCCCCCceeEeEeecc
Confidence 4578887 6999999999999999999999999999876444332 23456699999999 89988888887643
No 347
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=98.14 E-value=5.5e-06 Score=75.63 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=48.6
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeC
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLN 1067 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rd 1067 (1109)
.+++|..|.++|||++ ||++||.|++|||+++.+ +.++...++. .++.++|+ +.|+
T Consensus 35 ~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~R~ 92 (95)
T 1mfg_A 35 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKT--FQNTVELI-IVRE 92 (95)
T ss_dssp CCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHHH--CCSEEEEE-EEEE
T ss_pred CCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhhc--CCCeEEEE-EEeC
Confidence 4899999999999999 999999999999999988 6677777774 48889998 5554
No 348
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.14 E-value=4e-06 Score=76.19 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=49.0
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
+++|..|.++|||+++| |++||.|++|||+++.+ ++++.+.++.. +..++|+ +.|++
T Consensus 31 ~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~-v~r~~ 90 (93)
T 2dkr_A 31 PIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA--QGSVKLV-VRSGP 90 (93)
T ss_dssp CCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHC--CSEEEEE-ECCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCcEEEE-EEeCC
Confidence 78999999999999996 99999999999999995 68899888873 4578887 56554
No 349
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=98.14 E-value=3.8e-06 Score=76.95 Aligned_cols=58 Identities=19% Similarity=0.412 Sum_probs=46.3
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHHH-HHhcCCCCeEEEEEEEC
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLET-LLDDGVDKNIELLIERG 354 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~~-~l~~~~g~~v~l~v~R~ 354 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+..+... .+....++.+.|+|.|.
T Consensus 30 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~ 90 (96)
T 2qkv_A 30 EIGCTI-ADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRP 90 (96)
T ss_dssp SSSEEE-EEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECC
T ss_pred CCcEEE-EEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEEeC
Confidence 367766 79999999999 9 99999999999999987544332 33445667899999985
No 350
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.13 E-value=1.8e-06 Score=81.44 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=49.5
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEE
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTV 1064 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v 1064 (1109)
+++|..|.++|||+++||++||.|++|||+++. +++++.+.++... ++.+.|+++
T Consensus 37 ~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~-~~~v~l~V~ 93 (111)
T 1vae_A 37 PVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFG-GEEVEMKVV 93 (111)
T ss_dssp SCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTT-TSEECEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CceEEEEEE
Confidence 568999999999999999999999999999999 9999999999854 667888743
No 351
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=98.13 E-value=4e-06 Score=78.76 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=48.1
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEEC
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERG 354 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~ 354 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++.++ .++..++... ++.+.|+|.|.
T Consensus 45 ~gv~V-~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~ 103 (109)
T 1q3o_A 45 ALQYL-ESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG-GNTLMVKVVMV 103 (109)
T ss_dssp SSEEE-EEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEEEE
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEEC
Confidence 47776 79999999999 9999999999999999999 7777666554 78899988874
No 352
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2
Probab=98.13 E-value=1.8e-05 Score=85.28 Aligned_cols=168 Identities=17% Similarity=0.117 Sum_probs=88.1
Q ss_pred ccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec-------CCeEEEEEEEEEcC------------------CCcEEE
Q 001276 67 ASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV-------NREEIPVYPIYRDP------------------VHDFGF 121 (1109)
Q Consensus 67 ~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~-------~~~~~~a~vv~~d~------------------~~DlAl 121 (1109)
...++|.+|++ .+|||+||++.. ...+.+-.. ....+.++-+..+| .+||||
T Consensus 26 ~~~CgGsLIs~--~~VLTAAHC~~~-~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIAL 102 (240)
T 1sgf_A 26 KYQCGGVLLDR--NWVLTAAHCYND-KYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLML 102 (240)
T ss_dssp SCCEEEEECSS--SEEEECGGGCCS-CCEEEECC----C-CTTCEEEEEEEEEECTTSCGGGC----CCTTCBCTTCCEE
T ss_pred CeEEEEEEecC--CEEEECHHhCCC-CceEEeCCcccccCCCCceEEEEEEEEcCCCCcccccccccccccCCCCCceEE
Confidence 46799999996 499999999973 222222111 23445555555544 369999
Q ss_pred EEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCCCCccccceeeEEE
Q 001276 122 FRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKKDGYNDFNTFYMQA 193 (1109)
Q Consensus 122 Lk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~~--~~~~~~~~~~~~~~~~iq~ 193 (1109)
|+++..-.-...+.++.|....+..|+.+.+.|+..... .......+.-+... ...|.. ...+. +|=+
T Consensus 103 l~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~~~~~---~~Ca 178 (240)
T 1sgf_A 103 LRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEM-KVTDA---MLCA 178 (240)
T ss_dssp EEESSCCCCCSSCCCCCCCCSCCCTTCEEEEC-------C---------CEEEEEECTHHHHTTCSS-BCCTT---EEEE
T ss_pred EEeCCcCcCCCcccccCCCCCCCCCCCEEEEEecCCCCCCCCCCCccccEEeeeEeCHHHhhhhhCC-CcCCC---eEeE
Confidence 999854211113455666666678899999999764321 11111122222110 001111 11111 1222
Q ss_pred e-----eccCCCCCCCceecCCCcEEEEeccccCC----CCCccccchHHHHHHHHHH
Q 001276 194 A-----SGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFL 242 (1109)
Q Consensus 194 ~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~~~----~~~~falP~~~i~~~l~~l 242 (1109)
. ...-.|.|||||+- +|.++||.+.+... ...+.+.-+...+..+++.
T Consensus 179 ~~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~ 235 (240)
T 1sgf_A 179 GEMDGGSYTCEHDSGGPLIC-DGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRET 235 (240)
T ss_dssp EECSSSEEECCCCTTCEEEE-TTEEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHH
T ss_pred ccCCCCCCCCCCCCcCcEEE-ccEEEEEEEECCCCCCCCCCCeEEEeHHHHHHHHHHH
Confidence 1 23457999999996 68999999876321 1223444455555555443
No 353
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.13 E-value=4.1e-06 Score=76.80 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=52.1
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
|++|..+.+ +|+++||++||.|++|||+++.++ +++.+.++..+.++.++|+ +.|++.+
T Consensus 33 Gv~V~~v~~--~a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~-v~R~g~~ 93 (96)
T 1ujv_A 33 GQRVKQILD--IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLI-IHRGSGP 93 (96)
T ss_dssp EEEEEEESC--GGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEE-EECCSSC
T ss_pred CEEEEEEec--ccccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE-EEECCCC
Confidence 789999998 378999999999999999999875 9999999997668999999 7888753
No 354
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.13 E-value=3.1e-06 Score=80.63 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=49.3
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++.. .++.+.|+|.|+++.
T Consensus 49 ~g~~V-~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~ 111 (117)
T 1ujd_A 49 IGAYI-AKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ-QSGEAEICVRLDLNM 111 (117)
T ss_dssp EEEEE-EEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSC-CSSCEEEEEESSCCC
T ss_pred cCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCEEEEEEEECCcc
Confidence 46666 79999999999 9 99999999999999977 5556665544 678899999998763
No 355
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Probab=98.13 E-value=3.3e-05 Score=82.91 Aligned_cols=162 Identities=13% Similarity=0.137 Sum_probs=92.4
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC---------CeEEEEEEEEEcC-
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDP- 115 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~---------~~~~~a~vv~~d~- 115 (1109)
-|-+|.|.... .......++|.+|+++ +|||+||++.. .....|.+.. ...+.++-+..+|
T Consensus 12 ~Pw~v~l~~~~------~~~~~~~CgGtLIs~~--~VLTAAHC~~~-~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~hp~ 82 (236)
T 1elt_A 12 WPWQISLQYKS------GSSYYHTCGGSLIRQG--WVMTAAHCVDS-ARTWRVVLGEHNLNTNEGKEQIMTVNSVFIHSG 82 (236)
T ss_dssp STTEEEEEEEE------TTEEEEEEEEEEEETT--EEEECHHHHSS-CCCEEEEESCSBTTSCCSCCEEECEEEEEECTT
T ss_pred CCCEEEEEEec------CCceeeEEEEEEEeCC--EEEECHHhhCC-cCceEEEEccccCCCCCCCcEEEEEEEEEECCC
Confidence 35678887632 1111257999999964 99999999974 3456666542 2456666666665
Q ss_pred --------CCcEEEEEEcCCC-cccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---C-C
Q 001276 116 --------VHDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---D-A 175 (1109)
Q Consensus 116 --------~~DlAlLk~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~---~-~ 175 (1109)
.+||||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+..+.. . .
T Consensus 83 y~~~~~~~~~DiALl~L~~~~~~~-~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~ 161 (236)
T 1elt_A 83 WNSDDVAGGYDIALLRLNTQASLN-SAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSS 161 (236)
T ss_dssp CCTTCGGGCCCCEEEEESSCCCCS-SSCCCCCCCCTTCCCCTTCCEEEEESCCSSTTCCCCSBCEEEECCEECHHHHTST
T ss_pred CCCCCCCCCccEEEEECCCCCccC-CcEEeccCCCccccCCCCCEEEEEeCCCcCCCCCcChhheEeEeeecCHHHhccc
Confidence 5699999997532 11 123344443 33467899999999864321 1122222222211 1 0
Q ss_pred CCCCCCCccccceeeEEEe---eccCCCCCCCceecC-CC--cEEEEecccc
Q 001276 176 PHYKKDGYNDFNTFYMQAA---SGTKGGSSGSPVIDW-QG--RAVALNAGSK 221 (1109)
Q Consensus 176 ~~~~~~~~~~~~~~~iq~~---a~~~~G~SGgPv~n~-~G--~vVGi~~~~~ 221 (1109)
..++. ...+ .++-+. ...-.|.|||||+-. +| .++||.+.+.
T Consensus 162 ~~~~~-~~~~---~~~Ca~~~~~~~C~GDSGgPL~~~~~g~~~l~Gi~S~g~ 209 (236)
T 1elt_A 162 GWWGS-TVKT---TMVCAGGGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVS 209 (236)
T ss_dssp TTTGG-GSCT---TEEEECCSSCBCCTTCTTCEEEEEETTEEEEEEEEEECC
T ss_pred cccCC-cCCc---ceEEecCCCCccCCCCCCCeeEEEECCEEEEEEEEEEeC
Confidence 01111 0111 122221 234579999999853 56 7999998753
No 356
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=98.13 E-value=1.5e-06 Score=83.83 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=50.3
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
+++|..|.+||||+++| |++||.|++|||+++. +++++.+.++.. +..++|++....+.+
T Consensus 46 ~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~~ 108 (125)
T 3hpk_A 46 CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV--KGEVTIHYNKLQADP 108 (125)
T ss_dssp SEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHS--CSEEEEEEEEECSCH
T ss_pred CEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEEEEECCCCC
Confidence 68999999999999999 9999999999999998 789999999984 334888843324433
No 357
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.12 E-value=2.1e-06 Score=82.65 Aligned_cols=55 Identities=25% Similarity=0.459 Sum_probs=49.7
Q ss_pred EEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhc-CCCCeEEEEEEEC
Q 001276 300 LVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDD-GVDKNIELLIERG 354 (1109)
Q Consensus 300 lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~-~~g~~v~l~v~R~ 354 (1109)
++|..|.++|||++ | |++||+|++|||++|. ++.++..++.. .+|+.|+|+|.|+
T Consensus 51 v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~ 110 (126)
T 1wif_A 51 LQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG 110 (126)
T ss_dssp EEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred EEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 44579999999999 9 9999999999999995 89999999976 6799999999997
No 358
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A
Probab=98.12 E-value=0.00016 Score=77.87 Aligned_cols=181 Identities=14% Similarity=0.154 Sum_probs=100.5
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC------CeEEEEEEEEEcC-----
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN------REEIPVYPIYRDP----- 115 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~------~~~~~a~vv~~d~----- 115 (1109)
|-+|+|... ....++|.+|+++ +|||+||++......+.+.+.. +..+.++-+..+|
T Consensus 13 Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~Hp~y~~~ 80 (240)
T 2zgc_A 13 PYMASLQRN----------GSHLCGGVLVHPK--WVLTAAHCLAQRMAQLRLVLGLHTLDSPGLTFHIKAAIQHPRYKPV 80 (240)
T ss_dssp TTEEEEEET----------TEEEEEEEEEETT--EEEECGGGGCSCGGGEEEEESCSBSSSCCEEEEEEEEEECTTCBCT
T ss_pred CcEEEEEeC----------CCeEEEEEEEcCC--EEEEcHHhcCCCCCCEEEEecccccCCCCeEEEEEEEEECCCCCCC
Confidence 667777641 2467999999964 9999999998544346666542 3455565555543
Q ss_pred ---CCcEEEEEEcCCCcccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---CC-CCCCCC
Q 001276 116 ---VHDFGFFRYDPSAIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---DA-PHYKKD 181 (1109)
Q Consensus 116 ---~~DlAlLk~~~~~~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~---~~-~~~~~~ 181 (1109)
.+||||||++..-.....+.++.|. ...+..|+.+.+.|+..... .....-.+.-+.. .. ..|..
T Consensus 81 ~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~- 159 (240)
T 2zgc_A 81 PALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNG- 159 (240)
T ss_dssp TSCBSCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEECCBSSTTCCBCSBCEEEEEEECCHHHHTSTTTTTT-
T ss_pred CCCcccEEEEEeCCcccCCCceeeeEcCCCCCCCCCCCEEEEEECCcccCCCCcCceeeeeeeeecCHHHhCCccccCC-
Confidence 4699999997532111123344443 33457899999999863321 1122222222211 10 01211
Q ss_pred CccccceeeEEEe-----eccCCCCCCCceecC-CCcEEEEeccccCC----CCCccccchHHHHHHHHHHH
Q 001276 182 GYNDFNTFYMQAA-----SGTKGGSSGSPVIDW-QGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQ 243 (1109)
Q Consensus 182 ~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~-~G~vVGi~~~~~~~----~~~~falP~~~i~~~l~~l~ 243 (1109)
.+.+ .++-+. ...-.|.|||||+-. +..++||.+.+... ...+.+.-+...+..+++..
T Consensus 160 ~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~ 228 (240)
T 2zgc_A 160 SLSP---SMVCLAADSKDQAPCKGDSGGPLVCGKGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVT 228 (240)
T ss_dssp CCCT---TEEEEECSSTTCBCCTTCTTCEEEETTTTEEEEEECCCCSSTTCTTSCCEEEESGGGHHHHHHHH
T ss_pred CCCC---ceEeeccCCCCCccCCCCccCeeEECCCCEEEEEEEECCCCCCCCCCCcEEEEHHHhHHHHHHHH
Confidence 1111 122221 234579999999853 24899999876321 12334444555555555443
No 359
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=98.12 E-value=6.6e-06 Score=73.73 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=46.0
Q ss_pred cEEEEEecCCChhhh-cCCCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEE
Q 001276 1009 GVYVARWCHGSPVHR-YGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVR 1062 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~-~GL~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~ 1062 (1109)
+++|..|.++|||++ +||++||.|++|||+++. +++++...++. .++.++|+
T Consensus 29 ~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~ 83 (87)
T 4e34_A 29 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ--QRGEIEFE 83 (87)
T ss_dssp EEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHH--CCSEEEEE
T ss_pred CEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE
Confidence 689999999999999 799999999999999994 56899999986 36678777
No 360
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=98.12 E-value=6.7e-06 Score=77.93 Aligned_cols=55 Identities=20% Similarity=0.364 Sum_probs=46.1
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEe--CChhHHHHHHhcCCCCeEEEEEEE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVI--TQFLKLETLLDDGVDKNIELLIER 353 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v--~~~~~l~~~l~~~~g~~v~l~v~R 353 (1109)
.+++| ..|.++|||++ | |++||+|++|||+++ .++.++..++.... +.+.|+|.+
T Consensus 50 ~~~~V-~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~ 108 (114)
T 2gzv_A 50 PCLYI-VQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYNK 108 (114)
T ss_dssp CCEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEEC
T ss_pred CCEEE-EEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEe
Confidence 45665 79999999999 9 999999999999999 88999988876543 457887755
No 361
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}
Probab=98.12 E-value=3e-05 Score=83.31 Aligned_cols=154 Identities=20% Similarity=0.195 Sum_probs=89.7
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec---------CCeEEEEEEEEEcCC-
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV- 116 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~---------~~~~~~a~vv~~d~~- 116 (1109)
|-+|.|... ....++|.+|++ .+|||+||++.. . ..+.+. ....+.++-+..+|.
T Consensus 13 Pw~v~l~~~----------~~~~CgGsLIs~--~~VLTAAHC~~~-~--~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y 77 (238)
T 1spj_A 13 PWQAALYHF----------STFQCGGILVHR--QWVLTAAHCISD-N--YQLWLGRHNLFDDENTAQFVHVSESFPHPGF 77 (238)
T ss_dssp TTEEEEEET----------TEEEEEEEEEET--TEEEECGGGCCS-S--EEEEESCSBTTSCCTTCEEECEEEEEECTTS
T ss_pred CcEEEEEeC----------CCeeEEEEEecC--CEEEEcHHhCCC-C--ceEEEEeccccCCCCCceEEEEEEEEcCCCc
Confidence 567777542 246799999996 499999999983 2 344442 123455555555543
Q ss_pred -----------------CcEEEEEEcCCCc-ccccccCCCCCCccCCCCCEEEEEecCCCCC------CeEEEEEEEEec
Q 001276 117 -----------------HDFGFFRYDPSAI-QFLNYDEIPLAPEAACVGLEIRVVGNDSGEK------VSILAGTLARLD 172 (1109)
Q Consensus 117 -----------------~DlAlLk~~~~~~-~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~ 172 (1109)
+||||||++.... -...+.++.|.......|+.+.+.|+..... .......+.-+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~~v~pi~L~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~ 157 (238)
T 1spj_A 78 NMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILP 157 (238)
T ss_dssp CGGGGCC--CTTTCCCTTCCEEEEESSCCCCSSTTCCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEEC
T ss_pred cccccccccccccccCCCCeEEEEECccccccCCceeeccCCCCCCCCCCEEEEEecCCCCCCCCCCcCcccEEEEeecC
Confidence 5999999975421 1113455556666677899999999864221 112222222221
Q ss_pred CC--CCCCCCCCccccceeeEEEe-----eccCCCCCCCceecCCCcEEEEeccc
Q 001276 173 RD--APHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGS 220 (1109)
Q Consensus 173 ~~--~~~~~~~~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~ 220 (1109)
.. ...|.. ...+ .+|-+. ...-.|.|||||+- +|.++||.+.+
T Consensus 158 ~~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~-~~~l~Gi~S~g 207 (238)
T 1spj_A 158 NDECKKAHVQ-KVTD---FMLCVGHLEGGKDTCVGDSGGPLMC-DGVLQGVTSWG 207 (238)
T ss_dssp HHHHHHHCSS-CCCT---TEEEEECTTCSSBCCTTCTTCEEEE-TTEEEEEEEEC
T ss_pred HHHhhhhccC-CCCC---CeEEeeCCCCCCCCCCCCCCCcEEE-cCEEEEEEEeC
Confidence 10 000111 1111 112221 23457999999995 58999999876
No 362
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=98.12 E-value=4.1e-06 Score=78.34 Aligned_cols=58 Identities=24% Similarity=0.214 Sum_probs=49.2
Q ss_pred cEEEEEecCCChhhhcC--CCCCCeEEEECCeeCCCH--HHHHHHHHhCCC--CceEEEEEEEeC
Q 001276 1009 GVYVARWCHGSPVHRYG--LYALQWIVEINGKRTPDL--EAFVNVTKEIEH--GEFVRVRTVHLN 1067 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G--L~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~--~~~v~l~~v~rd 1067 (1109)
+++|..|.++|||+++| |++||.|++|||+++.++ +++...++...+ +..+.|+ +.|+
T Consensus 44 ~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~-v~r~ 107 (107)
T 3nfk_A 44 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL-VRPN 107 (107)
T ss_dssp EEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEE-EECC
T ss_pred CeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEE-EEcC
Confidence 68999999999999999 999999999999999965 788888887543 3578888 5553
No 363
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.12 E-value=5.3e-06 Score=77.63 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=51.1
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ +.++...++. .++.++|+ +.|++.
T Consensus 40 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~R~~~ 101 (107)
T 1wf8_A 40 LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN--TKGNVRFV-IGREKP 101 (107)
T ss_dssp EEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH--CCSEEEEE-EEEECC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCCeEEEE-EEeCCC
Confidence 489999999999999999 99999999999999985 7788888887 37889998 566543
No 364
>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A
Probab=98.12 E-value=5.9e-05 Score=78.51 Aligned_cols=173 Identities=14% Similarity=0.144 Sum_probs=113.0
Q ss_pred hCCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecCCeEEEEE-----EEEEcCCCcE
Q 001276 45 VVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVY-----PIYRDPVHDF 119 (1109)
Q Consensus 45 ~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~~~~~~a~-----vv~~d~~~Dl 119 (1109)
+...|+.+.... ......--|+.... +|+||+|........+.+++..|.. ... -+..=+..|+
T Consensus 22 Ia~~ic~l~n~s-------dg~~~~l~gigyG~---~iItn~HLf~~nnG~L~I~s~hG~f-~v~nt~~lki~~i~g~Di 90 (229)
T 1lvm_A 22 ISSTICHLTNES-------DGHTTSLYGIGFGP---FIITNKHLFRRNNGTLLVQSLHGVF-KVKNTTTLQQHLIDGRDM 90 (229)
T ss_dssp HHTTEEEEEEEE-------TTEEEEEEEEEETT---EEEECGGGGGCCSSEEEEEETTEEE-EESCGGGSEEEECTTSSC
T ss_pred hheEEEEEEecc-------CCceEEEEEEeECC---EEEeChhhhccCCCcEEEEeCCCeE-EeCCCCceeeEEeCCccE
Confidence 455677777652 11223335666654 9999999999766778888766632 221 2445577899
Q ss_pred EEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEEEecCCCCCCCCCCccccceeeEEEeeccCC
Q 001276 120 GFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKG 199 (1109)
Q Consensus 120 AlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs~~~~~~~~~~~~~~~~~~~~~iq~~a~~~~ 199 (1109)
.++|.. +++|+.+-. +.-..++.|++|..||..+..+...+ .+|.-....|.. +..+...-.++..
T Consensus 91 iiIrmP-kDfpPf~~~---l~FR~P~~~e~V~lVg~~fq~k~~~s--~vSesS~i~p~~--------~~~fWkHwIsT~~ 156 (229)
T 1lvm_A 91 IIIRMP-KDFPPFPQK---LKFREPQREERICLVTTNFQTKSMSS--MVSDTSCTFPSS--------DGIFWKHWIQTKD 156 (229)
T ss_dssp EEEECC-TTSCCCCSC---CCBCCCCTTCEEEEEEEECSSSSCEE--EECCCEECEEET--------TTTEEEECBCCCT
T ss_pred EEEeCC-CcCCCcccc---cccCCCCCCCeEEEEEeEeecCCccE--EECCcceeEecC--------CCCEeEEEeeCCC
Confidence 999994 444432211 12356899999999998766553322 222221111111 1224777788999
Q ss_pred CCCCCceec-CCCcEEEEeccccCCCCCccccchHH-HHHHHHHH
Q 001276 200 GSSGSPVID-WQGRAVALNAGSKSSSASAFFLPLER-VVRALRFL 242 (1109)
Q Consensus 200 G~SGgPv~n-~~G~vVGi~~~~~~~~~~~falP~~~-i~~~l~~l 242 (1109)
|+-|.|+++ .||++|||++........+|+.|+.. +..+|+..
T Consensus 157 G~CGlPlVs~~Dg~IVGiHsl~~~~~~~NyF~~f~~~f~~~L~~~ 201 (229)
T 1lvm_A 157 GQCGSPLVSTRDGFIVGIHSASNFTNTNNYFTSVPKNFMELLTNQ 201 (229)
T ss_dssp TCTTCEEEETTTCCEEEEEEEEETTSCSEEEEECCTTHHHHHHCG
T ss_pred CcCCCcEEECCCCcEEEEEcccccCCCeEEEeCCCHHHHHHHhcc
Confidence 999999998 68999999998887778899977743 44555544
No 365
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=98.12 E-value=4.8e-06 Score=75.78 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=48.8
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEe--CChhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVI--TQFLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v--~~~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..+++| ..|.++|||++ | |++||+|++|||+++ .++.++..++....+ .+.|+|.|...
T Consensus 27 ~~~~~V-~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~~~ 89 (93)
T 3o46_A 27 TGAIIV-ARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQG-AITFKIIPGSK 89 (93)
T ss_dssp TCCEEE-EEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCE-EEEEEEECC--
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-eEEEEEEeCCC
Confidence 356665 79999999999 9 999999999999999 788888888866544 89999888654
No 366
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.11 E-value=2.8e-06 Score=80.96 Aligned_cols=57 Identities=23% Similarity=0.430 Sum_probs=50.3
Q ss_pred eEEEEEecCCCcccc-C-CCCCCEEEEECCEEe--CChhHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 299 LLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVI--TQFLKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 299 ~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v--~~~~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
++| ..|.++|||++ | |++||+|++|||+++ .++.++..+|. ..|+.+.|+|.|+++.
T Consensus 44 ~~V-~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~~ 104 (117)
T 1v62_A 44 ITI-DRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA-SISEKVRLEILPVPQS 104 (117)
T ss_dssp EEE-EECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH-SCSSEEEEEECCBTTB
T ss_pred EEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCeEEEEEEECCCC
Confidence 555 79999999999 9 999999999999999 66888888887 4789999999998753
No 367
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=98.11 E-value=3.6e-06 Score=81.93 Aligned_cols=60 Identities=23% Similarity=0.447 Sum_probs=51.2
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcC-CCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDG-VDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~-~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++... .++.|.|+|.|++.
T Consensus 64 ~~gv~V-~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 128 (131)
T 1wfg_A 64 RLCAFI-TKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP 128 (131)
T ss_dssp CEEEEE-EEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEECS
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCCC
Confidence 346676 79999999999 9 99999999999999975 57788888654 78999999999763
No 368
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.11 E-value=3.5e-06 Score=79.26 Aligned_cols=64 Identities=25% Similarity=0.532 Sum_probs=51.0
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCEEEEEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGISMTVN 361 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~~~~~~ 361 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+. .++...+.. .++.+.|+|.|+++..+++
T Consensus 35 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~~~~~~ 102 (110)
T 1um1_A 35 APGLYI-QTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH-GGKKMRFLVAKSDVETAKK 102 (110)
T ss_dssp CSSEEE-EEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT-CCSEEEEEEECCCHHHHHH
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCcceeEE
Confidence 467777 79999999999 9 999999999999999864 444444443 5889999999998755443
No 369
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.11 E-value=3.6e-06 Score=78.65 Aligned_cols=58 Identities=19% Similarity=0.401 Sum_probs=46.4
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHHH-HHhcCCCCeEEEEEEEC
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLET-LLDDGVDKNIELLIERG 354 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~~-~l~~~~g~~v~l~v~R~ 354 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+..+.+. .+....++.+.|+|.|.
T Consensus 24 ~~gv~V-~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~ 84 (106)
T 2la8_A 24 EIGCTI-ADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRP 84 (106)
T ss_dssp SSSEEE-EECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEEEEEC
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeC
Confidence 367776 79999999999 9 99999999999999987544442 23445667899999885
No 370
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=5.6e-06 Score=79.22 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=51.5
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.++ +++...++.. ++.++|+ +.|++.
T Consensus 47 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~--g~~v~l~-v~R~~~ 108 (120)
T 2eno_A 47 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA--GYAVSLR-VQHRLQ 108 (120)
T ss_dssp CSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHH--CSEEEEE-EEEEEE
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEeCCc
Confidence 489999999999999999 999999999999999985 5888888872 7789998 666654
No 371
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=98.10 E-value=7.1e-06 Score=76.22 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=48.7
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
+++|..|.++|||+++| |++||.|++|||+++. ++.++...++. .++.+.|. +.|++
T Consensus 36 gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~r~~ 95 (104)
T 3i4w_A 36 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN--AGQTVTII-AQYKP 95 (104)
T ss_dssp CEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHT--SCSEEEEE-EEECH
T ss_pred CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEECc
Confidence 89999999999999999 9999999999999994 55677777776 47888888 66654
No 372
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.10 E-value=4.5e-06 Score=79.73 Aligned_cols=59 Identities=20% Similarity=0.413 Sum_probs=49.4
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChhHHHHHH-hcCCCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFLKLETLL-DDGVDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~~l~~~l-~~~~g~~v~l~v~R~g~ 356 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++.++.+..... ....++.+.|+|.|++.
T Consensus 38 ~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~ 99 (119)
T 1tp5_A 38 EGIFI-SFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 99 (119)
T ss_dssp CCEEE-EEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECHH
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence 56666 79999999999 9 9999999999999999987655433 44578899999998753
No 373
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=98.10 E-value=5.6e-06 Score=80.62 Aligned_cols=56 Identities=23% Similarity=0.358 Sum_probs=49.8
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeC
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLN 1067 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rd 1067 (1109)
|++|..|.++|||+++||++||+|++|||+++.+ ++++...++. .++.++|+ +.+.
T Consensus 66 gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~--~g~~v~l~-v~~~ 123 (132)
T 3l4f_D 66 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ--GGNTLMVK-VVMV 123 (132)
T ss_dssp SEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHHHHHHHH--TTTEEEEE-EECC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCEEEEE-EEEC
Confidence 8999999999999999999999999999999984 7899999987 47789888 4443
No 374
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=98.10 E-value=7.5e-06 Score=73.92 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=46.1
Q ss_pred cEEEEEecCCChhhhc-CCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEE
Q 001276 1009 GVYVARWCHGSPVHRY-GLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVR 1062 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~-GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~ 1062 (1109)
+++|..|.++|||+++ ||++||.|++|||+++.+ +.++...++. .++.++|+
T Consensus 31 g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~~~v~l~ 85 (90)
T 1qav_A 31 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK--TGKEVVLE 85 (90)
T ss_dssp EEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHT--CCSEEEEE
T ss_pred CEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh--CCCeEEEE
Confidence 7899999999999999 999999999999999986 6777788876 36778887
No 375
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=98.10 E-value=5.1e-06 Score=86.46 Aligned_cols=57 Identities=25% Similarity=0.399 Sum_probs=53.5
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.+||||+++||++||.|++|||+++.+ ++++.+.++. ++.+.|+ +.|+|.
T Consensus 111 ~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~---~~~v~l~-v~r~g~ 169 (192)
T 3k1r_A 111 GLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT---EKTVSIK-VRHIGL 169 (192)
T ss_dssp EEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS---SSEEEEE-EEECCE
T ss_pred CEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC---CCeEEEE-EEECCc
Confidence 7899999999999999999999999999999999 9999998886 7889999 788887
No 376
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=98.10 E-value=3.6e-06 Score=77.14 Aligned_cols=56 Identities=18% Similarity=0.123 Sum_probs=45.8
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeC
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLN 1067 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rd 1067 (1109)
+++|..|.++|||+++| |++||.|++|||+++.+ .++....++. .+..++|+ +.|.
T Consensus 32 gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~--~~~~v~l~-v~R~ 90 (96)
T 2qkv_A 32 GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKG--ANGKVSME-VTRP 90 (96)
T ss_dssp SEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT--CSSEEEEE-EECC
T ss_pred cEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCCcEEEE-EEeC
Confidence 78999999999999999 99999999999999986 3445555554 35678888 5553
No 377
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=98.10 E-value=3.5e-06 Score=79.69 Aligned_cols=62 Identities=24% Similarity=0.442 Sum_probs=50.1
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCEEEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGISMT 359 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~v~R~g~~~~ 359 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.++. ++..++.. .|+.+.|+|.|+++..+
T Consensus 34 ~~g~~V-~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~~~ 99 (113)
T 2g5m_B 34 KLGIFV-KTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGRERPGEQ 99 (113)
T ss_dssp CEEEEE-EECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHH-SCSSCEEEEEECCCCTT
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEeCCCCCc
Confidence 457666 79999999999 9 9999999999999998744 44444444 48899999999987544
No 378
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.10 E-value=2.8e-06 Score=76.59 Aligned_cols=56 Identities=21% Similarity=0.474 Sum_probs=45.9
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEe--CChhHHHHHHhcCCCCeEEEEEEEC
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVI--TQFLKLETLLDDGVDKNIELLIERG 354 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v--~~~~~l~~~l~~~~g~~v~l~v~R~ 354 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++ .++.++..++... +.++.|++.+.
T Consensus 21 ~gv~V-~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~-~~~v~L~v~~~ 80 (88)
T 3e17_A 21 SQIFV-KEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKS-RGKLQLVVLRD 80 (88)
T ss_dssp EEEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEECCC
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEeCC
Confidence 35555 79999999999 9 999999999999999 7788888887654 34788877653
No 379
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2
Probab=98.10 E-value=9.9e-06 Score=86.19 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=91.3
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC--CeEEEEEec------CCeEEEEEEEEEcCC--
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV------NREEIPVYPIYRDPV-- 116 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~--~~~~~v~~~------~~~~~~a~vv~~d~~-- 116 (1109)
|-+|.|... ....++|.+|++ .+|||+||++... ...+.+.+. ++..+..+-+..+|.
T Consensus 13 Pw~v~l~~~----------~~~~CgGtLIs~--~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~v~~~~~hp~y~ 80 (222)
T 1eq9_A 13 PYQVSLRLS----------GSHRCGASILDN--NNVLTAAHCVDGLSNLNRLKVHVGTNYLSESGDVYDVEDAVVNKNYD 80 (222)
T ss_dssp TTEEEEEET----------TEEEEEEEECSS--SEEEECHHHHTTCSCGGGEEEEESCSBTTSCCEEEEEEEEEECTTCB
T ss_pred ceEEEEEeC----------CCeEEEEEEeeC--CEEEEhhhcCCCCCCCceEEEEECceecCCCCeEEEEEEEEECCCCC
Confidence 567777642 246799999996 4999999999743 345666653 245667766666664
Q ss_pred -----CcEEEEEEcCCC-cccccccCCCCCCccC-CCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--C-CCCCCC
Q 001276 117 -----HDFGFFRYDPSA-IQFLNYDEIPLAPEAA-CVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--A-PHYKKD 181 (1109)
Q Consensus 117 -----~DlAlLk~~~~~-~~~~~l~~l~l~~~~~-~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~--~-~~~~~~ 181 (1109)
+|||||+++..- +. ..+.++.|..... ..|+.+.+.|+..... .......+.-+... . ..|+
T Consensus 81 ~~~~~~DIALl~L~~~v~~~-~~v~picL~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-- 157 (222)
T 1eq9_A 81 DFLLRNDVALVHLTNPIKFN-DLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWR-- 157 (222)
T ss_dssp TTTTBCCCEEEEESSCCCCB-TTBCCCEECSCCTTCTTSEEEEEECCCSSTTCCCCSBCEEEEEEEECHHHHHHHSSS--
T ss_pred CCCCCCCEEEEEECCccccC-CceEccCCCCCCcCCCCCEEEEEcccccCCCCcccchheEeEEEEeCHHHhCcccCC--
Confidence 799999998542 11 1233444433332 6799999999764321 11222222222110 0 1111
Q ss_pred CccccceeeEEEe----eccCCCCCCCceecCCCcEEEEecccc
Q 001276 182 GYNDFNTFYMQAA----SGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 182 ~~~~~~~~~iq~~----a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
..+ ..+-+. ...-.|.|||||+- +|.++||.+.+.
T Consensus 158 -~~~---~~~Ca~~~~~~~~C~GDSGgPL~~-~~~l~GI~S~g~ 196 (222)
T 1eq9_A 158 -VID---SHICTLTKRGEGACHGDSGGPLVA-NGAQIGIVSFGS 196 (222)
T ss_dssp -CCT---TEEEECCCTTCBCCTTCTTCEEEE-TTEEEEEEEECS
T ss_pred -CCc---cEEeecCCCCCeeeeCCccceEEE-CCEEEEEEEECC
Confidence 111 112221 23457999999996 679999998764
No 380
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.10 E-value=2.2e-06 Score=79.55 Aligned_cols=58 Identities=29% Similarity=0.417 Sum_probs=51.0
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++| |++||.|++|||+++.+ ++++...++. .++.++|+ +.|++.
T Consensus 37 ~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~~~ 97 (103)
T 1wfv_A 37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS--GGRRVRLL-LKRGTG 97 (103)
T ss_dssp EEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHH--HCSEECEE-EECTTC
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEECCC
Confidence 78999999999999999 99999999999999988 5788888874 47889998 677765
No 381
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=98.09 E-value=7.1e-07 Score=84.64 Aligned_cols=65 Identities=26% Similarity=0.355 Sum_probs=52.9
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCHHH--HHHHHHhCCCCceEEEEEEEeC-CeEEEEEEe
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEA--FVNVTKEIEHGEFVRVRTVHLN-GKPRVLTLK 1076 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l~~--f~~~l~~~~~~~~v~l~~v~rd-g~~~~i~lk 1076 (1109)
.+++|..|.++|||+++||++||.|++|||+++.++.+ +...++. ++.+.|+ +.|+ |..+++.++
T Consensus 41 ~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~---~~~v~l~-v~r~~g~~~~~~~~ 108 (114)
T 1x5n_A 41 PGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKS---SRSLTIS-IVAAAGRELFMTDR 108 (114)
T ss_dssp CSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHH---CSSEEEE-ECSSTTTHHHHSSC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhc---CCeEEEE-EEcCCCCceEEEec
Confidence 38999999999999999999999999999999999854 7777765 3578888 6777 765444433
No 382
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=98.09 E-value=4.1e-06 Score=78.32 Aligned_cols=54 Identities=26% Similarity=0.405 Sum_probs=47.7
Q ss_pred EEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 302 VDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 302 v~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
|..|.++|||++ ||++||+|++|||+++. ++.++..++.. .|+.+.|+|.|.+.
T Consensus 47 V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 103 (107)
T 3qe1_A 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRA-GEKELILTVLSVES 103 (107)
T ss_dssp EEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHH-CSSEEEEEEECSSC
T ss_pred EEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEcCCC
Confidence 479999999999 99999999999999999 77888887764 58899999999654
No 383
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.09 E-value=3.3e-06 Score=79.34 Aligned_cols=59 Identities=27% Similarity=0.486 Sum_probs=51.4
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCC---CCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGV---DKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~---g~~v~l~v~R~g~ 356 (1109)
.+++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..+|.... +..++|++.|+++
T Consensus 41 ~~~~V-~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~~ 106 (109)
T 1wi4_A 41 PLVYI-HEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP 106 (109)
T ss_dssp SSEEE-EEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred CCEEE-EEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeCCC
Confidence 36666 79999999999 9 99999999999999987 778888887665 8899999999764
No 384
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2
Probab=98.09 E-value=5.7e-05 Score=80.52 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=90.0
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC---------CeEEEEEEEEEcCC
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV 116 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~---------~~~~~a~vv~~d~~ 116 (1109)
-|-+|.|.... ......++|.+|+++ +|||+||++.. ...+++.. ...+..+-+..+|.
T Consensus 12 ~Pw~v~l~~~~-------~~~~~~CgGsLI~~~--~VLTAAHC~~~---~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 79 (227)
T 1euf_A 12 RPYMAFLLFKT-------SGKSHICGGFLVRED--FVLTAAHCLGS---SINVTLGAHNIMERERTQQVIPVRRPIPHPD 79 (227)
T ss_dssp CTTEEEEEEES-------SSSEEEEEEEEEETT--EEEECGGGCCE---EEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred cCCEEEEEEeC-------CCCceEEEEEEeeCC--EEEECHHHCCC---CcEEEEcccccCCCCCccEEEEEEEEEeCCC
Confidence 36678886531 112467999999964 99999999973 35555431 34566666666664
Q ss_pred -------CcEEEEEEcCCC-cccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCCC
Q 001276 117 -------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHYK 179 (1109)
Q Consensus 117 -------~DlAlLk~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~--~~~~~ 179 (1109)
+||||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+.-+... ...|.
T Consensus 80 y~~~~~~~DIALl~L~~~~~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~ 158 (227)
T 1euf_A 80 YNDETLANDIMLLKLTRKADIT-DKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFK 158 (227)
T ss_dssp CCTTTCTTCCEEEEESSCCCCC-SSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCTHHHHTTCT
T ss_pred CCCCCCcCceEEEEECCcCcCC-CceeccCCCCccccCCCCCEEEEEEEccCCCCCCCchhheEeEeccccHHHhhHhhc
Confidence 699999997532 11 123344443 33457899999999753221 12222222222210 01111
Q ss_pred CCCccccceeeEEEe-----eccCCCCCCCceecCCCcEEEEeccc
Q 001276 180 KDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGS 220 (1109)
Q Consensus 180 ~~~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~ 220 (1109)
. ...+ ..|=+. .....|.|||||+- +|.++||.+.+
T Consensus 159 ~-~~~~---~~~Ca~~~~~~~~~~~GDsGgPL~~-~~~l~Gi~S~g 199 (227)
T 1euf_A 159 N-YIPF---TQICAGDPSKRKNSFSGDSGGPLVC-NGVAQGIVSYG 199 (227)
T ss_dssp T-CCTT---TEEEESCTTSCCBCCTTCTTCEEEE-TTEEEEEEEEC
T ss_pred C-cCCC---cEEEccCCCCCCcccccCCCCceEE-CCEEEEEEEEe
Confidence 1 0111 112221 11227999999996 67999999875
No 385
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Probab=98.08 E-value=3.2e-05 Score=83.20 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=90.6
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC-CeEEEEEec--------CCeEEEEEEEEEcCCC
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFV--------NREEIPVYPIYRDPVH 117 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~-~~~~~v~~~--------~~~~~~a~vv~~d~~~ 117 (1109)
|-+|.|.... ......++|.+|++ .+|||+||++... +..+.+.+. +.+.+.++-+..+|.+
T Consensus 13 Pw~v~l~~~~-------~~~~~~CgGtLIs~--~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y 83 (241)
T 1m9u_A 13 PWQLSQQRQS-------GSWSHSCGASLLSS--TSALSASHCVDGVLPNNIRVIAGLWQQSDTSGTQTANVDSYTMHENY 83 (241)
T ss_dssp TTEEEEEEES-------SSEEEEEEEEECSS--SEEEECHHHHTTCCGGGEEEEESCSBTTCCTTCEEEEEEEEEECTTT
T ss_pred CeEEEEEecC-------CceeeeeEEEEEeC--CEEEecHHhCCCCCcceEEEEEEeecCCCCCCceEEEEEEEEeCCCc
Confidence 5577776531 11246799999986 4999999999742 345666653 2356677767777654
Q ss_pred ---------cEEEEEEcCCC-cccccccCCCCCCc--cCCCCCEEEEEecCCCCC-----CeEEEEEEEEecC-----CC
Q 001276 118 ---------DFGFFRYDPSA-IQFLNYDEIPLAPE--AACVGLEIRVVGNDSGEK-----VSILAGTLARLDR-----DA 175 (1109)
Q Consensus 118 ---------DlAlLk~~~~~-~~~~~l~~l~l~~~--~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~-----~~ 175 (1109)
||||||++..- +. ..+.++.|... ....|+.+.+.|+..... .......+.-+.. ..
T Consensus 84 ~~~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~ 162 (241)
T 1m9u_A 84 GAGTASYSNDIAILHLATSISLG-GNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAM 162 (241)
T ss_dssp TCSSSTTTTCCEEEEESSCCCCC-SSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHHHH
T ss_pred CCCCCcccccEEEEEecCccccC-CCccccCcCCCcCCCCCCCEEEEEeCcccCCCCCcccceeEeeEEEEcHHHhhhhh
Confidence 99999998532 11 12334444322 223899999999864321 1222222222211 00
Q ss_pred CCCCCCCccccceeeEEEe-----eccCCCCCCCceecCCC--cEEEEecc
Q 001276 176 PHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQG--RAVALNAG 219 (1109)
Q Consensus 176 ~~~~~~~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~~G--~vVGi~~~ 219 (1109)
.........+ ..+-+. ...-.|.|||||+-.+| .++||.+.
T Consensus 163 ~~~~~~~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~l~Gi~S~ 210 (241)
T 1m9u_A 163 VGVGGANIWD---NHICVQDPAGNTGACNGDSGGPLNCPDGGTRVVGVTSW 210 (241)
T ss_dssp TTSTTCCCCT---TEEEECCTTSCCBCCTTCTTCEEEEESSSEEEEEEEEE
T ss_pred cccCCCcccC---CcEEECcCCCCCeeecCcCCccEEEeCCCEEEEEEEEE
Confidence 0000000111 112221 23456999999985445 89999987
No 386
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*
Probab=98.08 E-value=3.3e-05 Score=82.98 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=90.6
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC-------CeEEEEEec----------CCeEEEE
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-------PVVAEAMFV----------NREEIPV 108 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~-------~~~~~v~~~----------~~~~~~a 108 (1109)
-|-+|.|... .....++|.+|++ .+|||+||++... +....+.+. ....+.+
T Consensus 12 ~Pw~v~l~~~---------~~~~~CgGtLI~~--~~VLTAAhC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~v 80 (241)
T 3ncl_A 12 WPWQVSLHAL---------GQGHICGASLISP--NWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRL 80 (241)
T ss_dssp STTEEEEEET---------TTEEEEEEEECSS--SEEEECGGGGCCBTTBCTTCGGGEEEEESCSBTTCTTSTTCEEEEE
T ss_pred CCcEEEEEcC---------CCceEEEEEEeeC--CEEEEcHHhcccCCCccccCCceEEEEEeccccccCCCCCceEEEE
Confidence 3557777642 1235799999996 4999999999642 234455543 2356677
Q ss_pred EEEEEcC-------CCcEEEEEEcCCC-cccccccCCCC--CCccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecC
Q 001276 109 YPIYRDP-------VHDFGFFRYDPSA-IQFLNYDEIPL--APEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR 173 (1109)
Q Consensus 109 ~vv~~d~-------~~DlAlLk~~~~~-~~~~~l~~l~l--~~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~ 173 (1109)
+-+..+| .+||||||++..- +. ..+.++.| ....+..|+.+.+.|+..... .......+.-+..
T Consensus 81 ~~i~~hp~y~~~~~~~DIALl~L~~~~~~~-~~v~piclp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~ 159 (241)
T 3ncl_A 81 KRIISHPFFNDFTFDYDIALLELEKPAEYS-SMVRPISLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQ 159 (241)
T ss_dssp EEEEECTTCCTTTCTTCCEEEEESSCCCCC-SSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEECCH
T ss_pred EEEEECCCCCCCCCCCcEEEEEECCCCccc-CccCceEcCCcccCCCCCCEEEEEEecccCCCCCcCceeeEEeEEEECH
Confidence 7777777 4799999997532 11 12233333 344566899999999853211 1122222222211
Q ss_pred C--CCCCCCCCccccceeeEEE-----eeccCCCCCCCcee--cCCCc--EEEEecccc
Q 001276 174 D--APHYKKDGYNDFNTFYMQA-----ASGTKGGSSGSPVI--DWQGR--AVALNAGSK 221 (1109)
Q Consensus 174 ~--~~~~~~~~~~~~~~~~iq~-----~a~~~~G~SGgPv~--n~~G~--vVGi~~~~~ 221 (1109)
. ...|.. ...+ .++=+ ....-.|.|||||+ +.+|+ ++||.+.+.
T Consensus 160 ~~C~~~~~~-~~~~---~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~g~~~l~Gi~S~g~ 214 (241)
T 3ncl_A 160 TTCENLLPQ-QITP---RMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGD 214 (241)
T ss_dssp HHHHHHSTT-TCCT---TEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECS
T ss_pred HHhhhhccc-CCCC---CeEEeCCCCCCCccCCCcCCCCEEEEcCCCcEEEEEEEEECC
Confidence 0 000110 0111 11222 12345799999997 34665 899998765
No 387
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=98.08 E-value=7.7e-06 Score=77.51 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=47.2
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeC--CCHHHHHHHHHhCCCCceEEEE
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVR 1062 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v--~~l~~f~~~l~~~~~~~~v~l~ 1062 (1109)
+++|..|.++|||+++| |++||.|++|||+++ .+++++.+.++... ..++|+
T Consensus 51 ~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~--~~v~l~ 105 (114)
T 2gzv_A 51 CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK--GEVTIH 105 (114)
T ss_dssp CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC--SEEEEE
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC--CeEEEE
Confidence 68999999999999999 999999999999999 99999999998743 347776
No 388
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=98.08 E-value=5.4e-06 Score=80.44 Aligned_cols=59 Identities=29% Similarity=0.436 Sum_probs=50.2
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcC-CCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDG-VDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~-~g~~v~l~v~R~g~ 356 (1109)
.|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++... .|+.++|+|.|++.
T Consensus 43 ~~v~V-~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 106 (129)
T 2kpk_A 43 EFLQI-KSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYP 106 (129)
T ss_dssp EEEEE-EEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECSC
T ss_pred CCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence 45665 79999999999 9 99999999999999985 66787888664 48899999999763
No 389
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=98.08 E-value=6.8e-06 Score=78.34 Aligned_cols=58 Identities=28% Similarity=0.322 Sum_probs=49.2
Q ss_pred CCCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEEC
Q 001276 295 GETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERG 354 (1109)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R~ 354 (1109)
...|++| ..|.++|||++ | |++||+|++|||+.+. ++.++..++.. .++.+.|+|.|.
T Consensus 51 ~~~gv~V-~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~L~v~R~ 112 (118)
T 3b76_A 51 WDLPIYV-ISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKR-TSSSIVLKALEV 112 (118)
T ss_dssp CCCCEEE-EEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHS-CCSEEEEEEEEE
T ss_pred CCCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 3467776 79999999999 9 9999999999999999 77777777764 478899999884
No 390
>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*
Probab=98.08 E-value=8e-05 Score=80.65 Aligned_cols=168 Identities=13% Similarity=0.154 Sum_probs=93.1
Q ss_pred ccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC---------CeEEEEEEEEEcCC-------CcEEEEEEcCCC-c
Q 001276 67 ASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV-------HDFGFFRYDPSA-I 129 (1109)
Q Consensus 67 ~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~---------~~~~~a~vv~~d~~-------~DlAlLk~~~~~-~ 129 (1109)
...++|.+|+++ +|||+||++.. ...+.|++.. ...+.++-+..+|. +||||||++..- +
T Consensus 24 ~~~CgGsLI~~~--~VLTAAHC~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~ 100 (250)
T 1aut_C 24 KLACGAVLIHPS--WVLTAAHCMDE-SKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATL 100 (250)
T ss_dssp CEEEEEEEEETT--EEEECGGGSSS-CSCCEEEESCCBTTCCCTTCEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCC
T ss_pred ceEEEEEEeeCC--EEEEChHHcCC-CCceEEEEcccccCCCCCccEEEEEEEEEECCCCCCCCCCCcEEEEEECCcccC
Confidence 467999999964 99999999974 3445565532 24556666666664 699999998542 1
Q ss_pred ccccccCCCCCCc------cCCCCCEEEEEecCCCCCC----------eEEEEEEEEecCC--CCCCCCCCccccceeeE
Q 001276 130 QFLNYDEIPLAPE------AACVGLEIRVVGNDSGEKV----------SILAGTLARLDRD--APHYKKDGYNDFNTFYM 191 (1109)
Q Consensus 130 ~~~~l~~l~l~~~------~~~~G~~V~~iG~p~g~~~----------si~~G~vs~~~~~--~~~~~~~~~~~~~~~~i 191 (1109)
. ..+.++.|... ....|+.+.+.|+...... ......+.-+... ...|.. ...+ .+|
T Consensus 101 ~-~~v~picLp~~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~-~~~~---~~~ 175 (250)
T 1aut_C 101 S-QTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSN-MVSE---NML 175 (250)
T ss_dssp B-TTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEECHHHHHHHCSS-CCCT---TEE
T ss_pred C-CceeeeEcCCCccccccccCCCCEEEEEEeCCCCCCCccccccccceeeEEEEEEecHHHhhHHhcc-CCCC---CEE
Confidence 1 12344444432 2368999999998643210 1122222222110 000110 0111 112
Q ss_pred EE-----eeccCCCCCCCceec-CCCc--EEEEeccccCC---CCCccccchHHHHHHHHHH
Q 001276 192 QA-----ASGTKGGSSGSPVID-WQGR--AVALNAGSKSS---SASAFFLPLERVVRALRFL 242 (1109)
Q Consensus 192 q~-----~a~~~~G~SGgPv~n-~~G~--vVGi~~~~~~~---~~~~falP~~~i~~~l~~l 242 (1109)
=+ ....-.|.|||||+- .+|+ ++||.+.+..- ...+.+.-+...+..++..
T Consensus 176 Cag~~~~~~~~C~GDSGGPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~ 237 (250)
T 1aut_C 176 CAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGH 237 (250)
T ss_dssp EECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHHHHH
T ss_pred EeCCCCCCCCCCCCCCchheEEEECCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHH
Confidence 22 123557999999984 3564 99999876532 1233344555555555443
No 391
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.08 E-value=6.1e-06 Score=79.44 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=51.1
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
+++|..|.++|||+++| |++||.|++|||+++.+ +.++...++.. +..+.|+ +.|++..
T Consensus 52 gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~--~~~v~l~-v~R~~~~ 113 (124)
T 2daz_A 52 SIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTA--PSKVKLV-FIRNEDA 113 (124)
T ss_dssp CEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHS--CSEEEEE-EEECTTH
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEeCCCc
Confidence 78999999999999999 99999999999999966 77888888773 5589998 6777653
No 392
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.08 E-value=3e-06 Score=79.94 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=49.1
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIER 353 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R 353 (1109)
.+++| ..|.+++||++ ||++||+|++|||+++. +|.++..++....++.+.|+|.|
T Consensus 36 ~~v~V-~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~ 94 (111)
T 1vae_A 36 TPVQV-HFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS 94 (111)
T ss_dssp SSCEE-CCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEe
Confidence 45555 79999999999 99999999999999999 89999988877667778888876
No 393
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.07 E-value=1.2e-06 Score=84.60 Aligned_cols=59 Identities=29% Similarity=0.508 Sum_probs=51.7
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++. ++.++..++... |+.+.|+|.|+++
T Consensus 60 ~~gv~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 60 MDTIFV-KQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNS-DTTLELSVMPKDS 121 (126)
T ss_dssp CCCCCB-CCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHHTC-TTEEEEECCCCCC
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECCC
Confidence 356666 79999999999 99999999999999998 888888888654 8899999999875
No 394
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.07 E-value=7.1e-06 Score=74.50 Aligned_cols=58 Identities=29% Similarity=0.513 Sum_probs=46.9
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECC
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGG 355 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g 355 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++.. .++.+.|+|.|++
T Consensus 29 ~~~~~V-~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 90 (93)
T 2dkr_A 29 NSPIYI-SRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKA-AQGSVKLVVRSGP 90 (93)
T ss_dssp SCCCEE-EEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHH-CCSEEEEEECCCC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEeCC
Confidence 356666 79999999999 7 99999999999999996 4566655544 3568999998865
No 395
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.07 E-value=2.2e-06 Score=79.51 Aligned_cols=58 Identities=26% Similarity=0.443 Sum_probs=48.0
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++.++ .++..++. ..|+.+.|+|.|+++
T Consensus 36 ~~~~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~ 97 (103)
T 1wfv_A 36 MDLYV-LRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIK-SGGRRVRLLLKRGTG 97 (103)
T ss_dssp EEEEC-CCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHH-HHCSEECEEEECTTC
T ss_pred CCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECCC
Confidence 46665 79999999999 9 999999999999999985 44444444 567899999999875
No 396
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=3.6e-06 Score=77.17 Aligned_cols=58 Identities=26% Similarity=0.440 Sum_probs=46.9
Q ss_pred CCceEEEEEecCCCccccCCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECC
Q 001276 296 ETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGG 355 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g 355 (1109)
..+++| ..|.++|||+.||++||+|++|||+++.+. .++..++.. .|+.+.|+|.|++
T Consensus 30 ~~~~~V-~~V~~~spA~agL~~GD~Il~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 89 (96)
T 2edv_A 30 SLPLTV-VAVTAGGSAHGKLFPGDQILQMNNEPAEDLSWERAVDILRE-AEDSLSITVVRCT 89 (96)
T ss_dssp SSSCBC-CCBCSSSSSTTTSCTTCBEEEESSCBSTTCCHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred CCCeEE-EEECCCCchhhCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 456676 799999999659999999999999999874 444444443 7899999999976
No 397
>2jde_A Urokinase-type plasminogen activator; plasminogen activation, EGF-like domain, blood coagulation, inhibitor complex, UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Probab=98.07 E-value=0.0001 Score=80.91 Aligned_cols=185 Identities=11% Similarity=0.126 Sum_probs=101.2
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC--CeEEEEEecC---------CeEEEEEEEEEc
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFVN---------REEIPVYPIYRD 114 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~--~~~~~v~~~~---------~~~~~a~vv~~d 114 (1109)
-|-+|.|.... ........++|.+|+++ +|||+||++... .....+.+.. ...+.++-+..+
T Consensus 35 ~Pw~v~l~~~~-----~~~~~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h 107 (276)
T 2jde_A 35 QPWFAAIYRRH-----RGGSVTYVCGGSLMSPC--WVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILH 107 (276)
T ss_dssp STTEEEEEEEC-----CCCCEEEEEEEEEEETT--EEEECGGGTTTSCCGGGEEEEESCCBSSSCCTTCEEEEEEEEEEC
T ss_pred CCeEEEEEEec-----CCCccceeeeeEEeeCC--EEEEcHHhccCCCCcccEEEEecccccCCCCCCcEEEEEEEEEEC
Confidence 57788886542 11111457999999964 999999999642 2345555432 335666666666
Q ss_pred CC---------CcEEEEEEcCCC---c-ccccccCCCCC--CccCCCCCEEEEEecCCCCC------CeEEEEEEEEecC
Q 001276 115 PV---------HDFGFFRYDPSA---I-QFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK------VSILAGTLARLDR 173 (1109)
Q Consensus 115 ~~---------~DlAlLk~~~~~---~-~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~ 173 (1109)
|. +|||||+++... + ....+.++.|. ...+..|+.+.+.|+..... .......+.-+..
T Consensus 108 p~y~~~~~~~~~DIALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~ 187 (276)
T 2jde_A 108 KDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISH 187 (276)
T ss_dssp TTCEECSSCEESCCEEEEEECTTSCCCCCBTTBCCCBCCBTTBCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECH
T ss_pred CCCCCCCCcCCCcEEEEEeCCccccccccCCceEccCCCCcccCCCCCCEEEEEECCccCCCCcccchhhhhceecccCh
Confidence 54 599999997541 1 11123343333 35677899999999864321 1122222222221
Q ss_pred ---CCC-CCCCCCccccceeeEEEe-----eccCCCCCCCceec-CCC--cEEEEeccccCCC---CCccccchHHHHHH
Q 001276 174 ---DAP-HYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVID-WQG--RAVALNAGSKSSS---ASAFFLPLERVVRA 238 (1109)
Q Consensus 174 ---~~~-~~~~~~~~~~~~~~iq~~-----a~~~~G~SGgPv~n-~~G--~vVGi~~~~~~~~---~~~falP~~~i~~~ 238 (1109)
... .++. ...+ .+|=+. ...-.|.|||||+- .+| .++||.+.+..-. ..+.+.-+...+..
T Consensus 188 ~~C~~~~~~~~-~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~W 263 (276)
T 2jde_A 188 RECQQPHYYGS-EVTT---KMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW 263 (276)
T ss_dssp HHHTSTTTTGG-GSCT---TEEEEECTTSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHH
T ss_pred HHhCcccccCc-cCCC---CeEEecCCCCCCcccccccCcceEEEeCCcEEEEEEEEECCCCCCCCCCeEEEEHHHHHHH
Confidence 111 1111 1111 122221 23457999999984 344 4999998765321 23444445545555
Q ss_pred HHH
Q 001276 239 LRF 241 (1109)
Q Consensus 239 l~~ 241 (1109)
++.
T Consensus 264 I~~ 266 (276)
T 2jde_A 264 IRS 266 (276)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 398
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.07 E-value=9.1e-06 Score=75.99 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=49.6
Q ss_pred CcEEEEEecCCChhhhc-CCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1008 HGVYVARWCHGSPVHRY-GLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~-GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
.+++|..|.++|||+++ ||++||.|++|||+++.+ ++++...++. .++.+.|+ +.|.+
T Consensus 41 ~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~R~~ 101 (107)
T 1uhp_A 41 EGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT--AKEPIVVQ-VLRRT 101 (107)
T ss_dssp CCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH--CCSSEEEE-EEECC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCcEEEE-EEeCC
Confidence 48899999999999999 999999999999999976 6788888887 36778888 45543
No 399
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.07 E-value=4.6e-06 Score=78.23 Aligned_cols=58 Identities=28% Similarity=0.330 Sum_probs=49.7
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEEC
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERG 354 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~ 354 (1109)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..++....++.+.|+|.|.
T Consensus 43 ~~g~~V-~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~ 104 (108)
T 2d92_A 43 RSVIVI-RSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG 104 (108)
T ss_dssp CEEEEE-EEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred CCCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence 456666 79999999999 9 99999999999999965 77888888776677899999885
No 400
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...
Probab=98.06 E-value=7.5e-05 Score=80.32 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=91.0
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC---------CeEEEEEEEEEcC-
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDP- 115 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~---------~~~~~a~vv~~d~- 115 (1109)
-|-+|.|.... .......++|.+|+++ +|||+||++.. ...+.|.+.. ...+.++-+..+|
T Consensus 12 ~Pw~v~l~~~~------~~~~~~~CgGsLI~~~--~VLTAAHC~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 82 (240)
T 1gvk_B 12 WPSQISLQYRS------GSSWAHTCGGTLIRQN--WVMTAAHCVDR-ELTFRVVVGEHNLNQNNGTEQYVGVQKIVVHPY 82 (240)
T ss_dssp CTTEEEEEEEE------TTEEEEEEEEEEEETT--EEEECGGGGCS-CCCEEEEESCSBTTSCCSCCEEEEEEEEEECTT
T ss_pred cCEEEEEEecC------CCccCceEEEEEeeCC--EEEECHHHCCC-CcceEEEECCeecccCCCcceEEEEEEEEECCC
Confidence 35678876421 0101367999999964 99999999984 3456666532 2456666666666
Q ss_pred --------CCcEEEEEEcCCC-cccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---C-C
Q 001276 116 --------VHDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---D-A 175 (1109)
Q Consensus 116 --------~~DlAlLk~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~---~-~ 175 (1109)
.+||||||++..- +.. .+.++.|. ...+..|+.+.+.|+..... ..+....+..+.. . .
T Consensus 83 y~~~~~~~~~DIALl~L~~~v~~~~-~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~ 161 (240)
T 1gvk_B 83 WNTDDVAAGYDIALLRLAQSVTLNS-YVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSS 161 (240)
T ss_dssp CCTTCGGGCCCCEEEEESSCCCCBT-TBCCCCCCCTTCCCCTTCCEEEEESCBSSTTCCBCSBCEEEECCEECHHHHTST
T ss_pred CCCCCCCCCCcEEEEEECCccccCC-CccceecCCCCCCCCCCCEEEEEecCcCCCCCCcchhccEEEEEEEcHHHhccc
Confidence 5699999997542 111 12333333 33467899999999864321 1122222222211 1 0
Q ss_pred CCCCCCCccccceeeEEEe----eccCCCCCCCceec-CCC--cEEEEecccc
Q 001276 176 PHYKKDGYNDFNTFYMQAA----SGTKGGSSGSPVID-WQG--RAVALNAGSK 221 (1109)
Q Consensus 176 ~~~~~~~~~~~~~~~iq~~----a~~~~G~SGgPv~n-~~G--~vVGi~~~~~ 221 (1109)
..++. ...+ .+|=+. ...-.|.|||||+- .+| .++||.+.+.
T Consensus 162 ~~~~~-~~~~---~~~Ca~~~~~~~~C~GDSGgPL~~~~~g~~~l~Gi~S~g~ 210 (240)
T 1gvk_B 162 SYWGS-TVKN---SMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVS 210 (240)
T ss_dssp TTTGG-GCCT---TEEEECCSSSCBCCTTCTTCEEEEEETTEEEEEEEEEECB
T ss_pred cccCc-cCCc---ceEeecCCCCCcccCCCCcCceEEEECCcEEEEEEEEEeC
Confidence 01111 0111 122221 23457999999984 356 8999998763
No 401
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.06 E-value=3.6e-06 Score=78.78 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=47.6
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.++. ++..++.. .++.+.|+|.|++.
T Consensus 39 ~~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~ 101 (107)
T 1wf8_A 39 KLGIFV-KTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN-TKGNVRFVIGREKP 101 (107)
T ss_dssp EEEEEE-EEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH-CCSEEEEEEEEECC
T ss_pred CCCEEE-EEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEeCCC
Confidence 456666 79999999999 9 9999999999999998644 44444443 58899999999654
No 402
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}
Probab=98.06 E-value=0.00011 Score=78.37 Aligned_cols=159 Identities=13% Similarity=0.121 Sum_probs=90.6
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC--CeEEEEEec-----CCeEEEEEEEEEcCC---
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV-----NREEIPVYPIYRDPV--- 116 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~--~~~~~v~~~-----~~~~~~a~vv~~d~~--- 116 (1109)
|-+|.|... ....++|.+|+++ +|||+||++... +....+.+. +...+.++-+..+|.
T Consensus 13 Pw~v~l~~~----------~~~~CgGtLIs~~--~VLTAAhC~~~~~~~~~~~v~~G~~~~~~~~~~~v~~i~~hp~y~~ 80 (232)
T 2oq5_A 13 PWQASLQWD----------GSHRCGATLINAT--WLVSAAHCFTTYKNPARWTASFGVTIKPSKMKRGLRRIIVHEKYKH 80 (232)
T ss_dssp TTEEEEEET----------TEEEEEEEEEETT--EEEECGGGGSSCCCGGGEEEEESSBSTTCSEEEEEEEEEECTTCCT
T ss_pred CeeEEEEeC----------CCeeEEEEEEcCC--EEEECHHHcCCCCCCceEEEEEeeEECCCceEEeEEEEEeCCCCCC
Confidence 567777642 2467999999964 999999999742 234555553 234556666666654
Q ss_pred ----CcEEEEEEcCCCcccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---CC-CCCCCC
Q 001276 117 ----HDFGFFRYDPSAIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---DA-PHYKKD 181 (1109)
Q Consensus 117 ----~DlAlLk~~~~~~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~---~~-~~~~~~ 181 (1109)
+||||||++..-.-...+.++.|. ...+..|+.+.+.|+..... .......+.-+.. .. ..|..
T Consensus 81 ~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~- 159 (232)
T 2oq5_A 81 PSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYND- 159 (232)
T ss_dssp TCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHTSTTTTTT-
T ss_pred CCCCCCEEEEEecCCCccCCceeEeECCCccccCCCCCEEEEEECCccCCCCCCCceeeEeEEEEeCHHHcCCccccCC-
Confidence 699999998542100123333333 33456899999999753221 1222222322221 11 11111
Q ss_pred CccccceeeEEEe-----eccCCCCCCCceecCC--C--cEEEEecccc
Q 001276 182 GYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQ--G--RAVALNAGSK 221 (1109)
Q Consensus 182 ~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~~--G--~vVGi~~~~~ 221 (1109)
...+ .++=+. ...-.|.|||||+-.+ | .++||.+.+.
T Consensus 160 ~~~~---~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~GI~S~g~ 205 (232)
T 2oq5_A 160 AITP---RMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGD 205 (232)
T ss_dssp CCCT---TEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECS
T ss_pred ccCC---CEEeecCCCCCCccCCCCCCCcEEEECCCCCEEEEEEEEeCC
Confidence 1111 122221 2345799999998533 3 6999998764
No 403
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=98.06 E-value=9.1e-06 Score=71.93 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=45.3
Q ss_pred EEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEE
Q 001276 1011 YVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRT 1063 (1109)
Q Consensus 1011 ~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~ 1063 (1109)
+|.++.++|||+++||++||.|++|||+++.. .++.++.+++ .++.|+|++
T Consensus 26 ~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr~--~g~~V~L~v 78 (82)
T 1r6j_A 26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILST--SGTVVTITI 78 (82)
T ss_dssp EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHH--SCSEEEEEE
T ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHhc--CCCEEEEEE
Confidence 47899999999999999999999999999955 5899999984 588899984
No 404
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.06 E-value=4.7e-06 Score=79.54 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=47.1
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCCHHHH--HHHHHhCCCCceEEEEEEEeCC
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDLEAF--VNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~l~~f--~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
+++|..|.++|||+++| |++||.|++|||+++.++.++ ...++. .++.+.|. +.|++
T Consensus 39 gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~r~~ 98 (119)
T 1tp5_A 39 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN--AGQTVTII-AQYKP 98 (119)
T ss_dssp CEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHT--SCSEEEEE-EEECH
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEECC
Confidence 79999999999999999 999999999999999998543 334443 47889888 55544
No 405
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*
Probab=98.06 E-value=7.5e-05 Score=80.31 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=99.7
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC--CeEEEEEec---------CCeEEEEEEEEEc
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV---------NREEIPVYPIYRD 114 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~--~~~~~v~~~---------~~~~~~a~vv~~d 114 (1109)
-|-+|.|.... ......++|.+|+++ +|||+||++... +....+.+. +...+.++-+..+
T Consensus 12 ~Pw~v~l~~~~-------~~~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~H 82 (241)
T 2any_A 12 WPWQVSLQVKL-------TAQRHLCGGSLIGHQ--WVLTAAHCFDGLPLQDVWRIYSGILELSDITKDTPFSQIKEIIIH 82 (241)
T ss_dssp STTEEEEEEES-------SSEEEEEEEEEEETT--EEEECGGGGSSCCCSTTEEEECSCSBGGGCCTTSCCBCEEEEEEC
T ss_pred CCcEEEEEEEc-------CCCceEEEEEEecCC--EEEECHHHcCCCCCCccEEEEeeeeeccccccCceEEeeEEEEEC
Confidence 36678886531 123467999999964 999999999743 123445442 1234455556666
Q ss_pred CC-------CcEEEEEEcCCC-cccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecC--CCCC
Q 001276 115 PV-------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR--DAPH 177 (1109)
Q Consensus 115 ~~-------~DlAlLk~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~--~~~~ 177 (1109)
|. +|||||+++..- +. ..+.++.|. ......|+.+++.|+..... .......+.-+.. -...
T Consensus 83 p~y~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~ 161 (241)
T 2any_A 83 QNYKVSEGNHDIALIKLQAPLEYT-EFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKR 161 (241)
T ss_dssp TTCCTTSSSSCCEEEEESSCCCCB-TTBCCCCCCCSSCCSTTCSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHTT
T ss_pred CCCCCCCCCCCeEEEEeCCcccCC-CCcceeEcCCcccCCCCCCeEEEEecccCCCCCCcCchhheeEeEEeCHHHhhhH
Confidence 54 699999997532 11 122333333 33467899999999864321 1122222222211 0011
Q ss_pred CCCCCccccceeeEEE-----eeccCCCCCCCceecC-CC--cEEEEeccccCC---CCCccccchHHHHHHHHHH
Q 001276 178 YKKDGYNDFNTFYMQA-----ASGTKGGSSGSPVIDW-QG--RAVALNAGSKSS---SASAFFLPLERVVRALRFL 242 (1109)
Q Consensus 178 ~~~~~~~~~~~~~iq~-----~a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~~---~~~~falP~~~i~~~l~~l 242 (1109)
|......+ .++=+ ....-.|.|||||+-. +| .++||.+.+..- ...+.+.-+...+..+++.
T Consensus 162 ~~~~~~~~---~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~ 234 (241)
T 2any_A 162 YQDYKITQ---RMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEK 234 (241)
T ss_dssp SCTTCSCT---TEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHH
T ss_pred hccCCCCc---CcEeecCCCCCCccCCCCCCCcEEEEECCEEEEEEEEEecCCCCCCCCCeEEEEHHHhHHHHHHH
Confidence 11111111 12222 1234579999999853 45 699999876532 1233344455555554443
No 406
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=4.9e-06 Score=79.62 Aligned_cols=59 Identities=24% Similarity=0.441 Sum_probs=48.9
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.++. ++..++.. .++.+.|+|.|++.
T Consensus 46 ~~gv~V-~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 108 (120)
T 2eno_A 46 DSGIYV-SRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHRLQ 108 (120)
T ss_dssp CCSEEE-EEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHH-HCSEEEEEEEEEEE
T ss_pred CCCEEE-EEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 467776 79999999999 9 9999999999999999865 44455543 47899999999765
No 407
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.05 E-value=3.4e-06 Score=77.92 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=47.7
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
.+++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++... ++.+.|+|.|++.
T Consensus 36 ~~~~V-~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~~ 96 (100)
T 1whd_A 36 SPVRV-QAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSEIILLVWRVSG 96 (100)
T ss_dssp SSCBC-CBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHC-SSEEEEEEEECCS
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCC
Confidence 56565 79999999999 999999999999999995 47777766553 4569999999753
No 408
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.05 E-value=4.2e-06 Score=79.94 Aligned_cols=62 Identities=16% Similarity=0.298 Sum_probs=51.7
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCEEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGISM 358 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R~g~~~ 358 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++. ++.++..++....+..+.+++.|+++..
T Consensus 41 ~~gv~V-~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~~~~~ 106 (119)
T 1x6d_A 41 NKVITV-HRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPE 106 (119)
T ss_dssp CSSCEE-EEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECCCSS
T ss_pred CCCEEE-EEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCCCcc
Confidence 357777 69999999999 9 9999999999999998 4667777776666777788899988654
No 409
>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Probab=98.05 E-value=3.5e-05 Score=82.64 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=90.0
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC---CeEEEEEecC-----------CeEEEEEEE
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG---PVVAEAMFVN-----------REEIPVYPI 111 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~---~~~~~v~~~~-----------~~~~~a~vv 111 (1109)
-|-+|.|... .....++|.+|+++ +|||+||++... ...+.|.+.. ...+...-+
T Consensus 9 ~Pw~v~l~~~---------~~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i 77 (234)
T 2asu_B 9 SPWTVSLRNR---------QGQHFCGGSLVKEQ--WILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKM 77 (234)
T ss_dssp CTTEEEEECT---------TSCEEEEEEEEETT--EEEEEGGGSSCTTCCCTTCEEEESCSBSSCCTTCTTCEEEEEEEE
T ss_pred CcceEEeecc---------CCCEEEEEEEEeCC--EEEECHHHcCCCCCCcccEEEEEeeeeccCCCCCCceEEEEEEEE
Confidence 3566777532 13568999999964 999999999632 2334454431 234555555
Q ss_pred EEcCC-CcEEEEEEcCCC-cccccccCCCCC--CccCCCCCEEEEEecCCCCC----CeEEEEEEEEecCC--CCCCCCC
Q 001276 112 YRDPV-HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK----VSILAGTLARLDRD--APHYKKD 181 (1109)
Q Consensus 112 ~~d~~-~DlAlLk~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~----~si~~G~vs~~~~~--~~~~~~~ 181 (1109)
..+|. +||||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+.-+... ...|..
T Consensus 78 ~~hp~~~DiALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~- 155 (234)
T 2asu_B 78 VCGPSGSQLVLLKLERSVTLN-QRVALICLPPEWYVVPPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKHRG- 155 (234)
T ss_dssp EECSTTCCEEEEEESSCCCCS-SSSCCCBCCCTTCCCCTTCEEEEEESSCCTTSSCTTBCEEEEEEEECHHHHHHHTTT-
T ss_pred ecCCCCCCeEEEEeCCcCcCC-CcEeccCCCCccccCCCCCEEEEEeCCccCCCCCCccceEEEeeEEcHHHcccccCC-
Confidence 66664 899999998542 11 123344443 33467899999999864321 12222222222210 000110
Q ss_pred CccccceeeEEE-----eeccCCCCCCCceecCC-C--cEEEEecccc
Q 001276 182 GYNDFNTFYMQA-----ASGTKGGSSGSPVIDWQ-G--RAVALNAGSK 221 (1109)
Q Consensus 182 ~~~~~~~~~iq~-----~a~~~~G~SGgPv~n~~-G--~vVGi~~~~~ 221 (1109)
...+ ..+-+ ....-.|.|||||+-.. | .++||.+.+.
T Consensus 156 ~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~ 200 (234)
T 2asu_B 156 RVRE---SEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNR 200 (234)
T ss_dssp CCCT---TEEEECCCSSCCBCCTTCTTCEEEEEETTEEEEEEEECCCS
T ss_pred ccCc---ceEeecCCCCCCeeccCCCCCceEEEECCeEEEEEEEEcCC
Confidence 1111 11222 12345699999998543 3 7999998764
No 410
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=98.05 E-value=4.2e-06 Score=81.07 Aligned_cols=59 Identities=20% Similarity=0.401 Sum_probs=50.8
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC---ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT---QFLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~---~~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++. ++.++..++.. .++.+.|+|.|+..
T Consensus 53 ~~gv~V-~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~r~~~ 116 (128)
T 2db5_A 53 KVDIFV-KDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ-TTGSLRLIVAREPV 116 (128)
T ss_dssp CEEEEE-ECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH-CCSEEEEEEEECCC
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence 347676 79999999999 9 9999999999999998 77787777765 67899999999753
No 411
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.04 E-value=5.9e-06 Score=77.84 Aligned_cols=59 Identities=24% Similarity=0.546 Sum_probs=49.4
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++.. .|+.+.|+|.|++..
T Consensus 38 ~g~~V-~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 100 (111)
T 2dlu_A 38 SGVVV-RTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN-CGNSVRMLVARDPAG 100 (111)
T ss_dssp SSBEE-EEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHH-HCSEEEEEEEESCTT
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCCCC
Confidence 57776 79999999999 9 99999999999999985 4666666654 478999999997654
No 412
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2
Probab=98.04 E-value=0.00015 Score=78.12 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=92.7
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC---------CeEEEEEEEEEcCC
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV 116 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~---------~~~~~a~vv~~d~~ 116 (1109)
-|-+|.|.... .......++|.+|+++ +|||+||++. ......|.+.. ...+.++-+..+|.
T Consensus 12 ~Pw~v~l~~~~------~~~~~~~CgGtLI~~~--~VLTAAHC~~-~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~ 82 (241)
T 1bru_P 12 WPWQVSLQYDS------SGQWRHTCGGTLVDQS--WVLTAAHCIS-SSRTYRVVLGRHSLSTNEPGSLAVKVSKLVVHQD 82 (241)
T ss_dssp STTEEEEEEEE------TTEEEEEEEEEEEETT--EEEECGGGCC-TTSCEEEEESCSBSSSCCTTCEEEEEEEEEECTT
T ss_pred cCcEEEEEEec------CCceeeEEEeEEeeCC--EEEEcHHhcc-cCCceEEEEEcccccCCCCccEEEEEEEEEECCC
Confidence 35678886532 1111367999999964 9999999998 33456666542 34566666666653
Q ss_pred ---------CcEEEEEEcCCC-cccccccCCCC--CCccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---CCC
Q 001276 117 ---------HDFGFFRYDPSA-IQFLNYDEIPL--APEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---DAP 176 (1109)
Q Consensus 117 ---------~DlAlLk~~~~~-~~~~~l~~l~l--~~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~---~~~ 176 (1109)
+||||||++..- +. ..+.++.| ....+..|+.+.+.|+..... .......+.-+.. ...
T Consensus 83 y~~~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~ 161 (241)
T 1bru_P 83 WNSNQLSNGNDIALLKLASPVSLT-DKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKP 161 (241)
T ss_dssp CCTTCGGGCCCCEEEEESSCCCCC-SSCCCCBCCCTTCCCCTTCEEEEEESCCSSTTSCCCSBCEEEEEEEECHHHHTST
T ss_pred CCCCCCCCCCcEEEEEeCCCcccC-CccCCcccCCCcCCCCCCCEEEEEEccccCCCCCCCccceeCEEEEecHHHhCcc
Confidence 799999997542 11 12233333 333467899999999864211 1222222322221 110
Q ss_pred -CCCCCCccccceeeEEEe----eccCCCCCCCceecC--CC--cEEEEecccc
Q 001276 177 -HYKKDGYNDFNTFYMQAA----SGTKGGSSGSPVIDW--QG--RAVALNAGSK 221 (1109)
Q Consensus 177 -~~~~~~~~~~~~~~iq~~----a~~~~G~SGgPv~n~--~G--~vVGi~~~~~ 221 (1109)
.++. ...+ .+|=+. ...-.|.|||||+-. +| .++||.+.+.
T Consensus 162 ~~~~~-~~~~---~~~Ca~~~~~~~~C~GDSGgPL~~~~~~g~~~l~Gi~S~g~ 211 (241)
T 1bru_P 162 GWWGS-TVKT---NMICAGGDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGS 211 (241)
T ss_dssp TTTGG-GCCT---TEEEECCSSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECB
T ss_pred cccCC-cCCC---ceEeecCCCCCccCCCCCCCcEEEECCCCCEEEEEEEEEcC
Confidence 1111 1111 122221 234569999999843 56 7999998764
No 413
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Probab=98.04 E-value=0.00019 Score=77.40 Aligned_cols=179 Identities=13% Similarity=0.136 Sum_probs=100.2
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCC--eEEEEEecC---------CeEEEEEEEEEcC
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGP--VVAEAMFVN---------REEIPVYPIYRDP 115 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~--~~~~v~~~~---------~~~~~a~vv~~d~ 115 (1109)
|-+|.|... ...++|.+|+++ +|||+||++.... ..+.|.+.. ...+..+-+..+|
T Consensus 13 Pw~v~l~~~-----------~~~CgGsLIs~~--~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~hp 79 (248)
T 2r0l_A 13 PWLAAIYIG-----------DSFCAGSLVHTC--WVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYT 79 (248)
T ss_dssp TTEEEEEET-----------TEEEEEEEEETT--EEEECGGGGTTCCCGGGEEEEESCCBTTCCCSSCEEECEEEEEECT
T ss_pred CeEEEEEcC-----------CceEEEEEEcCC--EEEECHHHcCCCCCcCcEEEEEEeEEcCCCCCccEEEeeeEEEeCC
Confidence 556777541 367999999964 9999999997542 456666542 2345555555444
Q ss_pred --------CCcEEEEEEcCCC---ccc-ccccCCCCC--CccCCCCCEEEEEecCCCCC------CeEEEEEEEEecC--
Q 001276 116 --------VHDFGFFRYDPSA---IQF-LNYDEIPLA--PEAACVGLEIRVVGNDSGEK------VSILAGTLARLDR-- 173 (1109)
Q Consensus 116 --------~~DlAlLk~~~~~---~~~-~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~-- 173 (1109)
.+||||||++... +.+ ..+.++.|. ...+..|+.+.+.|+..... .......+.-+..
T Consensus 80 ~y~~~~~~~~DiALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~ 159 (248)
T 2r0l_A 80 LYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHK 159 (248)
T ss_dssp TCCTTSTTTTCCEEEEECCSSSCSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSSSCCSCCSBCEEEEEEBCCHHH
T ss_pred ccCcCCCCCCCEEEEEeCCcccccccCCCcEEEEECCCCCCCCCCCCEEEEEEccccCCCCCCCCchheEEEEeeeCHHH
Confidence 3699999998541 211 123444443 35567899999999863321 1222222322221
Q ss_pred -CC-CCCCCCCccccceeeEEE-----eeccCCCCCCCceecC-CC--cEEEEeccccCC---CCCccccchHHHHHHHH
Q 001276 174 -DA-PHYKKDGYNDFNTFYMQA-----ASGTKGGSSGSPVIDW-QG--RAVALNAGSKSS---SASAFFLPLERVVRALR 240 (1109)
Q Consensus 174 -~~-~~~~~~~~~~~~~~~iq~-----~a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~~---~~~~falP~~~i~~~l~ 240 (1109)
.. ..|+. ...+ .++=+ ....-.|.|||||+-. +| .++||.+.+..- ...+.+..+...+..++
T Consensus 160 C~~~~~~~~-~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~ 235 (248)
T 2r0l_A 160 CSSPEVYGA-DISP---NMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWIN 235 (248)
T ss_dssp HTSTTTTGG-GCCT---TEEEESCSSSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHHH
T ss_pred hCCccccCC-cCCC---CEEeECCCCCCCcCCCCccCCeEEEEECCcEEEEEEEEeCCCCCCCCCCcEEEEHHHHHHHHH
Confidence 10 01111 1111 12222 1234579999999854 45 599999876532 12344455555555554
Q ss_pred HH
Q 001276 241 FL 242 (1109)
Q Consensus 241 ~l 242 (1109)
+.
T Consensus 236 ~~ 237 (248)
T 2r0l_A 236 DR 237 (248)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 414
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=98.04 E-value=6.9e-06 Score=76.24 Aligned_cols=58 Identities=33% Similarity=0.577 Sum_probs=47.3
Q ss_pred CCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECC
Q 001276 296 ETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGG 355 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~v~R~g 355 (1109)
..|++| ..|.++|||++||++||+|++|||+++.++. ++...+. ..++.+.|+|.|+.
T Consensus 42 ~~gv~V-~~V~~~spA~~gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~ 101 (103)
T 1n7t_A 42 DDGIFV-TRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVREV 101 (103)
T ss_dssp CCSEEC-CCBSSSSTTSSSCCTTCEEEEETTEECSSCCHHHHHHHHH-HCCSEEEEEEECCC
T ss_pred CCCEEE-EEECCCCchHHCCCCCCEEEEECCEECCCCCHHHHHHHhh-cCCCeEEEEEEecC
Confidence 467776 7999999999999999999999999998854 3434443 56889999999863
No 415
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.04 E-value=2.3e-06 Score=81.64 Aligned_cols=57 Identities=25% Similarity=0.305 Sum_probs=50.4
Q ss_pred cEEEEEecCCChhhhc-CCCCCCeEEEECCeeCCC--HHHHHHHHHhCC--CCceEEEEEEEe
Q 001276 1009 GVYVARWCHGSPVHRY-GLYALQWIVEINGKRTPD--LEAFVNVTKEIE--HGEFVRVRTVHL 1066 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~-GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~--~~~~v~l~~v~r 1066 (1109)
.++|..|.++|||+++ ||++||.|++|||+++.+ ++++.+.++... .++.++|+ +.|
T Consensus 44 ~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~-v~r 105 (118)
T 1v6b_A 44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLV-VAV 105 (118)
T ss_dssp SEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEE-EEC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEE-EEe
Confidence 4899999999999999 999999999999999998 789999998752 38889998 555
No 416
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.03 E-value=4.4e-06 Score=79.51 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=48.6
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEE
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTV 1064 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v 1064 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.+ ++++...++. .++.++|++.
T Consensus 50 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~--~g~~v~l~v~ 107 (117)
T 2ehr_A 50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN--AGNPVVFIVQ 107 (117)
T ss_dssp CSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHT--SCSSEEEEEC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEEEE
Confidence 489999999999999999 99999999999999976 6788888886 3788888843
No 417
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=5.7e-06 Score=78.31 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=46.7
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeC
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLN 1067 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rd 1067 (1109)
+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.++. ..+.|+ +.|.
T Consensus 45 gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~----~~v~l~-v~R~ 100 (114)
T 2d8i_A 45 RLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ----PSLGLL-VRTY 100 (114)
T ss_dssp EEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS----SEEEEE-EEEC
T ss_pred CEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC----CcEEEE-EEEC
Confidence 7899999999999999999999999999999998 5788888874 367777 4553
No 418
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.03 E-value=4.8e-06 Score=79.08 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=48.8
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++.+ +.++..++.. .++.+.|+|.|+++.
T Consensus 43 ~gv~V-~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~ 105 (116)
T 2dm8_A 43 NAIVI-HEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQ-TPQKVRLVVYRDEAH 105 (116)
T ss_dssp SSEEC-CCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHT-CCSEEEEEEECCSSC
T ss_pred CCEEE-EEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCCcc
Confidence 46665 79999999999 9 99999999999999988 5566655544 348899999998764
No 419
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.03 E-value=2.3e-06 Score=80.75 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=51.8
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceEEEEEEEeCCe
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v~l~~v~rdg~ 1069 (1109)
.+++|..|.++|||+++| |++||.|++|||+++. +++++...++. .++.++|+ +.|+..
T Consensus 44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~--~g~~v~l~-v~r~~~ 105 (111)
T 1uju_A 44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS--VGDTLTVL-VCDGFE 105 (111)
T ss_dssp CCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS--CSSEEEEC-CCCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEECCC
Confidence 478999999999999999 9999999999999999 78999998886 47888888 566543
No 420
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Probab=98.02 E-value=5.5e-05 Score=80.35 Aligned_cols=164 Identities=14% Similarity=0.139 Sum_probs=89.4
Q ss_pred EEEEEEEeCCCcEEEeCccccCCC--CeEEEEEec-------CCeEEEEEEEEEcCC-------CcEEEEEEcCCCcccc
Q 001276 69 YATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV-------NREEIPVYPIYRDPV-------HDFGFFRYDPSAIQFL 132 (1109)
Q Consensus 69 ~GSGfvV~~~~G~IlTn~HVv~~~--~~~~~v~~~-------~~~~~~a~vv~~d~~-------~DlAlLk~~~~~~~~~ 132 (1109)
.++|.+|++ .+|||+||++... ...+.+.+. +...+...-+..+|. +||||||++..-
T Consensus 21 ~CgGtLI~~--~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v---- 94 (224)
T 3beu_A 21 GCGGALYAQ--DIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPI---- 94 (224)
T ss_dssp TEEEEEEET--TEEEECGGGSCSSEEBCCCEEEESCSBTTCTTCEEEEEEEEEECTTCCCGGGSCCCEEEEESSCC----
T ss_pred ceeEEEeeC--CEEEEChhhcCCCCCcceEEEEeeEeecCCCCceEEEEEEEEeCCCcCCCcCCCCEEEEEeCCCC----
Confidence 489999996 4999999999843 223455553 134566666666665 599999997542
Q ss_pred cccCCCCCCccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCCCCCCccccceeeEEE-----eeccCCC
Q 001276 133 NYDEIPLAPEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHYKKDGYNDFNTFYMQA-----ASGTKGG 200 (1109)
Q Consensus 133 ~l~~l~l~~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~--~~~~~~~~~~~~~~~~iq~-----~a~~~~G 200 (1109)
.+.++++.......+..+.+.|+..... .......+.-+... ...|......+ ..+=+ ....-.|
T Consensus 95 ~~~~i~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~---~~~Ca~~~~~~~~~C~G 171 (224)
T 3beu_A 95 NQPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVAN---EMICAGYDTKQEDTCQG 171 (224)
T ss_dssp CSCCCEECCSSTTSSSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHHHCSSCCCGG---GEEEECCSSSSCBCCTT
T ss_pred CCCccccccccccCCCEEEEEecCccCCCCcccceeeEeeCcccCHHHhhhhcCCccCCC---CeEEeccCCCCCcCCCC
Confidence 2234444444444567899999864321 12222222222110 00011000111 11222 1234569
Q ss_pred CCCCceecCC--C--cEEEEeccccCC---CCCccccchHHHHHHHHH
Q 001276 201 SSGSPVIDWQ--G--RAVALNAGSKSS---SASAFFLPLERVVRALRF 241 (1109)
Q Consensus 201 ~SGgPv~n~~--G--~vVGi~~~~~~~---~~~~falP~~~i~~~l~~ 241 (1109)
.|||||+-.+ | .++||.+.+..- ...+.+.-+...+..+++
T Consensus 172 DsGgPl~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~ 219 (224)
T 3beu_A 172 DSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 219 (224)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEESSSSCTTCCEEEEEHHHHHHHHHH
T ss_pred cCCCeeEEecCCCCEEEEEEeccCCCCCCCCCCeEEEEHHHHHHHHHH
Confidence 9999998543 3 689999876532 123344445444444443
No 421
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Probab=98.01 E-value=3e-05 Score=84.85 Aligned_cols=155 Identities=16% Similarity=0.144 Sum_probs=82.1
Q ss_pred HhCCceEEEEEEeeeccCCCCCCccEEEEEEEeCC----CcEEEeCccccCCC---CeEEEEEecC--------------
Q 001276 44 KVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKR----RGIILTNRHVVKPG---PVVAEAMFVN-------------- 102 (1109)
Q Consensus 44 ~~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~----~G~IlTn~HVv~~~---~~~~~v~~~~-------------- 102 (1109)
...+||++|... +...++|++|+.. ..||||++|++... +..+.+.|..
T Consensus 20 ~~~~aV~rl~~~----------g~~~CGGSLI~~~~~~~~~~VLTAAHCv~~~~~~~~~~~v~~~~~~~~c~~~~~~~~~ 89 (268)
T 1arb_A 20 DIIRAVGAYSKS----------GTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPNTPASG 89 (268)
T ss_dssp TGGGGEEEEEET----------TEEEEEEEEBCCTTCCCCCEEEEEGGGSCCSHHHHHTCEEEESCCCSSCCCTTSGGGG
T ss_pred HhhceEEEEEeC----------CccEEeEEEEcCCCCCCCCEEEEcHHhCCCccCcceEEEEEeCCCCCccccccccccc
Confidence 457789988642 2578999999851 15999999999742 2234455421
Q ss_pred --------CeEEEEEEEEEcCCCcEEEEEEcCCCcc-----cccccCCCCCCccCCCCCEEEEEecCCCCCCeEEEEEEE
Q 001276 103 --------REEIPVYPIYRDPVHDFGFFRYDPSAIQ-----FLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLA 169 (1109)
Q Consensus 103 --------~~~~~a~vv~~d~~~DlAlLk~~~~~~~-----~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~~si~~G~vs 169 (1109)
.......++.....+||||||++..... ..-++. .. ..+.....+..|.+....+....+.
T Consensus 90 ~~~~~~~~~~~v~~~i~h~~~~nDIALLrL~~~v~~~~~~~vsGWG~----t~--~~~~~~~~~~~~~~~l~~i~~~~~~ 163 (268)
T 1arb_A 90 ANGDGSMSQTQSGSTVKATYATSDFTLLELNNAANPAFNLFWAGWDR----RD--QNYPGAIAIHHPNVAEKRISNSTSP 163 (268)
T ss_dssp SCCCCCCCCEEECEEEEEEETTTTEEEEEESSCCCGGGCCEEBCEEC----CS--CCCSCEEEEECGGGCSCEEEEECSC
T ss_pred cccCCcceEEeccceEecCCCCCceEEEEecCCCCCCCceEEeCcCc----cC--CCCCcceeeccCCcccEEEEeeccc
Confidence 0123334455567799999999864100 000010 00 0112222333333322222222111
Q ss_pred EecCCCCCCCCCCccccceeeEEEe-----eccCCCCCCCceecCCCcEEEEecccc
Q 001276 170 RLDRDAPHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDWQGRAVALNAGSK 221 (1109)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~~G~vVGi~~~~~ 221 (1109)
.. ...|+. .+.+ .+|.+. ...-.|.|||||+..+++++||++.+.
T Consensus 164 ~~---~~~~~~-~~~~---~~iCag~~~~~gdtC~gdsGgPl~~~~~~~~Gi~s~g~ 213 (268)
T 1arb_A 164 TS---FVAWGG-GAGT---THLNVQWQPSGGVTEPGSSGSPIYSPEKRVLGQLHGGP 213 (268)
T ss_dssp CE---EECTTS-SSCS---SEEEEECCTTSCCCCTTCTTCEEECTTSCEEEEEEECS
T ss_pred cc---cccccc-cccC---CeEEEeeecCCCCCccCcccCCcEeeCCEEEEEEeecC
Confidence 00 011221 1111 123332 135689999999987899999998764
No 422
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.01 E-value=4.8e-06 Score=80.93 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=51.2
Q ss_pred cEEEEEecCCChhhhc-CCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1009 GVYVARWCHGSPVHRY-GLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~-GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
+++|..|.+||||+++ ||++||.|++|||+++.+ ++++.+.++..+ ++.+.|. +.|++
T Consensus 58 ~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~~v~l~-v~r~~ 118 (130)
T 1i16_A 58 PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP-DGPVTIV-IRRKS 118 (130)
T ss_dssp CCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSC-SSEEEEE-EEEES
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CceEEEE-EEeCC
Confidence 6899999999999999 999999999999999987 699999999854 7778888 56544
No 423
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=98.00 E-value=2e-05 Score=82.08 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=56.8
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEe---CCeEEEEEEeeC
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHL---NGKPRVLTLKQD 1078 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~r---dg~~~~i~lk~~ 1078 (1109)
.+++|..|.++|||++ ||++||.|++|||+++.+. .+....++.. +..+.|+ +.| +|+...+.++..
T Consensus 24 ~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~-v~r~~~~G~~~~~~v~~~ 95 (195)
T 2qbw_A 24 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTF--QNTVELI-IVREVGNGAKQEIRVRVE 95 (195)
T ss_dssp CSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHC--CSEEEEE-EEEECSSSCEEEEEEEEE
T ss_pred CCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC--CCeEEEE-EEEcCCCCCCceeEeEee
Confidence 4899999999999999 9999999999999999884 5777777763 5589999 678 888877776664
No 424
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.00 E-value=5.2e-06 Score=77.47 Aligned_cols=58 Identities=26% Similarity=0.341 Sum_probs=49.3
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
.+++|..|.++|||+++||++||.|++|||+++.+ ++++...++. .++.+.|. +.|.+
T Consensus 32 ~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~r~~ 91 (106)
T 2eei_A 32 KGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKK--SGSRVMFL-LVDKE 91 (106)
T ss_dssp CSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHH--HCSEEEEE-ECCTT
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh--CCCeEEEE-EEcCc
Confidence 37899999999999999999999999999999985 5888888876 26778888 45544
No 425
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=98.00 E-value=1.2e-05 Score=72.91 Aligned_cols=53 Identities=26% Similarity=0.367 Sum_probs=43.4
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIE 352 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~ 352 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++.. ..++++|.
T Consensus 34 ~~g~~V-~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~---~~l~ltV~ 89 (94)
T 3kzd_A 34 IRRLYV-NSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVR 89 (94)
T ss_dssp SCEEEE-EEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHS---SEEEEEEE
T ss_pred cCCeEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC---CeEEEEEE
Confidence 356666 79999999999 999999999999999985 6788887763 35666654
No 426
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...
Probab=98.00 E-value=9.4e-05 Score=79.41 Aligned_cols=162 Identities=16% Similarity=0.186 Sum_probs=90.6
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC--CeEEEEEec---------CCeEEEEEEEEEcC
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV---------NREEIPVYPIYRDP 115 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~--~~~~~v~~~---------~~~~~~a~vv~~d~ 115 (1109)
|-+|.|.... ......++|.+|+++ +|||+||++... +..+.+.+. +...+..+-+..+|
T Consensus 13 Pw~v~l~~~~-------~~~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp 83 (238)
T 3bg8_A 13 PWQVTLHTTS-------PTQRHLCGGSIIGNQ--WILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHD 83 (238)
T ss_dssp TTEEEEEECS-------SSCEEEEEEEEEETT--EEEECGGGGTTCCCGGGEEEECSCSBGGGCCTTSCCEEEEEEEECT
T ss_pred CcEEEEEeec-------CCCcEEEEEEEeeCC--EEEECHHHCCCCCCCceEEEEEeeccCCcCCCCceEEeeEEEEECC
Confidence 5677776531 123567999999964 999999999743 234555543 23456666666666
Q ss_pred C-------CcEEEEEEcCCC-cccccccCCCCCC--ccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCC
Q 001276 116 V-------HDFGFFRYDPSA-IQFLNYDEIPLAP--EAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHY 178 (1109)
Q Consensus 116 ~-------~DlAlLk~~~~~-~~~~~l~~l~l~~--~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~--~~~~ 178 (1109)
. +||||||++..- +. ..+.++.|.. .....|+.+++.|+..... .......+.-+... ...|
T Consensus 84 ~y~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~ 162 (238)
T 3bg8_A 84 QYKMAESGYDIALLKLETTVNYT-DSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY 162 (238)
T ss_dssp TCCCGGGSCCCEEEEESSCCCCB-TTBCCCBCCCGGGGSSCCCCEEEEESCCSSSSCCCCSBCEEEECCEECHHHHHHHC
T ss_pred CCCCCCCCCcEEEEEECCccccC-CCcccCCCCCCccCcCCCCeEEEEecCCCCCCCChhhhhcEeeEEEECHHHhhhhh
Confidence 4 699999997542 11 1234444433 3367889999999853321 11111111111110 0011
Q ss_pred CCCCccccceeeEEE-----eeccCCCCCCCceecC-CC--cEEEEecccc
Q 001276 179 KKDGYNDFNTFYMQA-----ASGTKGGSSGSPVIDW-QG--RAVALNAGSK 221 (1109)
Q Consensus 179 ~~~~~~~~~~~~iq~-----~a~~~~G~SGgPv~n~-~G--~vVGi~~~~~ 221 (1109)
......+ .+|=+ ....-.|.|||||+-. +| .++||.+.+.
T Consensus 163 ~~~~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~ 210 (238)
T 3bg8_A 163 RGHKITH---KMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGE 210 (238)
T ss_dssp TTSCCCT---TEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECS
T ss_pred cCCCCCC---CeEeecCCCCCCCcCCCCCCcceEEEECCeEEEEEEEEECC
Confidence 1101111 11222 1234579999999853 44 5999998765
No 427
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.00 E-value=6.9e-06 Score=77.80 Aligned_cols=58 Identities=24% Similarity=0.380 Sum_probs=50.8
Q ss_pred ceEEEEEecCCCcccc--CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 298 GLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 298 G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
+++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++.. .++.+.|+|.|+++.
T Consensus 44 ~~~V-~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~~ 105 (114)
T 1uew_A 44 PHKI-GRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD-AGLSVTLRIIPQEEL 105 (114)
T ss_dssp SCEE-EEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH-TTTEEEEEECCCSCC
T ss_pred CeEE-EEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCcC
Confidence 4455 79999999998 899999999999999999 5888888866 789999999998764
No 428
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=97.99 E-value=4.2e-06 Score=80.14 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=48.4
Q ss_pred ceEEEEeecCCCHHhhh--ccCCCEEEEECCEEcCCh--hHHHHHHHhccCCCCCCCeEEEEEEeCCEEEE
Q 001276 900 QVLRVKGCLAGSKAENM--LEQGDMMLAINKQPVTCF--HDIENACQALDKDGEDNGKLDITIFRQGREIE 966 (1109)
Q Consensus 900 ~~~~V~~V~~~spA~~a--L~~GDiIlsVnG~~V~~~--~dl~~~l~~~~~g~~~~~~v~l~V~R~g~~~~ 966 (1109)
.+++|..|.++|||+++ |+.||+|++|||+.+.++ .++..++. ..+ +.+.|+|.|+|+..+
T Consensus 53 ~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~--~~~----~~v~l~v~r~g~~~~ 117 (120)
T 2iwo_A 53 VPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLK--NAS----GSIEMQVVAGGDVSE 117 (120)
T ss_dssp EEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHH--HCC----SEEEEEEECCTTSSS
T ss_pred CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHH--cCC----CeEEEEEEECCccce
Confidence 56889999999999976 999999999999999885 44444442 233 679999999886543
No 429
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.99 E-value=3.1e-06 Score=80.83 Aligned_cols=60 Identities=23% Similarity=0.213 Sum_probs=51.1
Q ss_pred cEEEEEecCCChhhhc--CCCCCCeEEEECCeeCCC--HHHHHHHHHhCCC--CceEEEEEEEeCCe
Q 001276 1009 GVYVARWCHGSPVHRY--GLYALQWIVEINGKRTPD--LEAFVNVTKEIEH--GEFVRVRTVHLNGK 1069 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~--GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~--~~~v~l~~v~rdg~ 1069 (1109)
+++|..|.++|||+++ ||++||.|++|||+++.+ ++++.+.++.... +..++|+ +.|+..
T Consensus 42 ~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~-v~R~~~ 107 (119)
T 2cs5_A 42 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL-VRPNAV 107 (119)
T ss_dssp EEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEE-EECCCC
T ss_pred CeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEE-EEcccc
Confidence 6899999999999999 999999999999999976 6888888887532 2578888 677754
No 430
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=97.99 E-value=1e-06 Score=83.56 Aligned_cols=60 Identities=25% Similarity=0.443 Sum_probs=48.6
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCChhH--HHHHHhcCCCCeEEEEEEEC-CEEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLK--LETLLDDGVDKNIELLIERG-GISM 358 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~~--l~~~l~~~~g~~v~l~v~R~-g~~~ 358 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.++.+ +..++... +.+.|+|.|+ |+..
T Consensus 40 ~~gv~V-~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~--~~v~l~v~r~~g~~~ 103 (114)
T 1x5n_A 40 KPGIFI-SHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS--RSLTISIVAAAGREL 103 (114)
T ss_dssp SCSEEE-EEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC--SSEEEEECSSTTTHH
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC--CeEEEEEEcCCCCce
Confidence 457666 79999999999 999999999999999999865 44444432 5799999998 7643
No 431
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=97.99 E-value=2.4e-05 Score=90.53 Aligned_cols=78 Identities=22% Similarity=0.254 Sum_probs=66.7
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCe---EEEEEEeeCCccC
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGK---PRVLTLKQDLHYW 1082 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~---~~~i~lk~~~~y~ 1082 (1109)
.+++|..+.++|||+++||++||+|++|||+++.++ +++.+.++. +.++.++|+ +.|+|. .+.++|+.+..--
T Consensus 99 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~-~~g~~v~l~-v~r~g~~~~~~~~~l~r~~i~~ 176 (388)
T 1fc6_A 99 KDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQG-EADSQVEVV-LHAPGAPSNTRTLQLTRQKVTI 176 (388)
T ss_dssp SCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCB-STTCEEEEE-EEETTEEEEEEEEEEECBCCCC
T ss_pred CcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCCEEEEE-EEeCCCCcceEEEEEEEceeec
Confidence 378999999999999999999999999999999996 889888886 569999999 788988 7888888766555
Q ss_pred cceEE
Q 001276 1083 PTWEL 1087 (1109)
Q Consensus 1083 pt~e~ 1087 (1109)
+++..
T Consensus 177 ~~v~~ 181 (388)
T 1fc6_A 177 NPVTF 181 (388)
T ss_dssp CCEEE
T ss_pred Cceee
Confidence 55543
No 432
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=97.98 E-value=5.2e-06 Score=80.33 Aligned_cols=59 Identities=29% Similarity=0.402 Sum_probs=49.8
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcC------CCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDG------VDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~------~g~~v~l~v~R~g~ 356 (1109)
.|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..+|... .++.|+|+|.|++.
T Consensus 55 ~gi~V-~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~ 123 (127)
T 1wg6_A 55 LGIFI-KSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123 (127)
T ss_dssp EEEEE-EECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred CCEEE-EEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence 46666 79999999999 8 99999999999999988 55777777543 57899999999765
No 433
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=97.98 E-value=1.6e-05 Score=73.77 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=46.9
Q ss_pred cEEEEEecCCChhhhc-CCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEE
Q 001276 1009 GVYVARWCHGSPVHRY-GLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRT 1063 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~-GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~ 1063 (1109)
+++|..|.++|||+++ ||++||.|++|||+++.+ ++++...+++. +..++|++
T Consensus 36 ~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~--~~~v~l~v 91 (103)
T 2dc2_A 36 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ--RGEIEFEV 91 (103)
T ss_dssp EEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHC--CSEEEEEE
T ss_pred CEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC--CCcEEEEE
Confidence 7899999999999995 999999999999999955 89999999974 45788883
No 434
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=97.98 E-value=1.2e-05 Score=78.37 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=48.2
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
.|++| ..|.++|||++ ||++||+|++|||+.+.+ +.++..++.. .|+.+.|+|.|....
T Consensus 65 ~gv~V-~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~~~~~~ 126 (132)
T 3l4f_D 65 ALQYL-ESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ-GGNTLMVKVVMVTRH 126 (132)
T ss_dssp CSEEE-EEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHHHHHHHH-TTTEEEEEEECCCC-
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECCCC
Confidence 57777 69999999999 999999999999999986 4555555544 678999999886543
No 435
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=97.98 E-value=2.6e-05 Score=90.24 Aligned_cols=69 Identities=29% Similarity=0.529 Sum_probs=57.7
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE---EEEEEEEee
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI---SMTVNLVVQ 365 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~---~~~~~v~l~ 365 (1109)
..+++| ..|.++|||++ ||++||+|++|||+++.++ .++..++....|+.++|+|.|+|+ .++++++..
T Consensus 98 ~~~~~V-~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~~~~l~r~ 172 (388)
T 1fc6_A 98 GKDVVV-LTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQ 172 (388)
T ss_dssp SSCEEE-EEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEEEEEEEEEEECB
T ss_pred CCcEEE-EEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCCCcceEEEEEEEc
Confidence 356665 69999999999 9999999999999999997 667777766789999999999998 566665544
No 436
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=97.97 E-value=7.7e-06 Score=75.90 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=49.0
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeC
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLN 1067 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rd 1067 (1109)
.+++|..|.++|||++ ||++||.|++|||+++.+ +.++...++. .++.++|+ +.|+
T Consensus 43 ~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~ 100 (103)
T 1n7t_A 43 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKT--FQNTVELI-IVRE 100 (103)
T ss_dssp CSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHHH--CCSEEEEE-EECC
T ss_pred CCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhhc--CCCeEEEE-EEec
Confidence 4899999999999999 999999999999999977 6778888875 47889998 6665
No 437
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=97.97 E-value=9.8e-06 Score=84.30 Aligned_cols=57 Identities=28% Similarity=0.562 Sum_probs=50.6
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++.. |+.+.|+|.|+|+
T Consensus 110 ~~~~V-~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~v~l~v~r~g~ 169 (192)
T 3k1r_A 110 CGLFI-SHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT--EKTVSIKVRHIGL 169 (192)
T ss_dssp EEEEE-EEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS--SSEEEEEEEECCE
T ss_pred CCEEE-EEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC--CCeEEEEEEECCc
Confidence 45565 79999999999 999999999999999999 8777777655 8899999999987
No 438
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2
Probab=97.97 E-value=5.9e-05 Score=80.97 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=92.4
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC----CeEEEEEecC-------C--eEEEEEEEEE
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG----PVVAEAMFVN-------R--EEIPVYPIYR 113 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~----~~~~~v~~~~-------~--~~~~a~vv~~ 113 (1109)
|-+|+|.... . ......++|.+|+++ +|||+||++... +..+.|.+.. + ..+.++-+..
T Consensus 13 Pw~v~l~~~~----~--~~~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~ 84 (237)
T 2f91_A 13 PYQLSFQETF----I--GFSFHFCGASIYNEN--YAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVSKIIL 84 (237)
T ss_dssp TTEEEEEEEE----T--TEEEEEEEEEEEETT--EEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCSCCEEEEEEEEEE
T ss_pred CcEEEEEEec----C--CCCcceEEEEEeeCC--EEEEcHHhCCCCccCCcccEEEEECCeeccCCCCccEEEEEEEEEE
Confidence 5677776531 0 111134999999964 999999999742 3446666531 2 4566666666
Q ss_pred cCC-------CcEEEEEEcCCCcccccccCCCCCCccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCCC
Q 001276 114 DPV-------HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHYK 179 (1109)
Q Consensus 114 d~~-------~DlAlLk~~~~~~~~~~l~~l~l~~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~--~~~~~ 179 (1109)
+|. +||||||++..-.-...+.++.|.......|+.+.+.|+..... .......+.-+... ...|.
T Consensus 85 Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~ 164 (237)
T 2f91_A 85 HENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYG 164 (237)
T ss_dssp CTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCSEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHHHHHC
T ss_pred CCCCCCCCCCCcEEEEEECCCcccCCceeeccCCCCCCCCCCcEEEEECCcCCCCCCccceeeEEEEeEcCHHHhhhhhC
Confidence 664 69999999854211113455555555557899999999863321 11222222222110 00011
Q ss_pred CCCccccceeeEEE-----eeccCCCCCCCceecCCC---cEEEEecccc
Q 001276 180 KDGYNDFNTFYMQA-----ASGTKGGSSGSPVIDWQG---RAVALNAGSK 221 (1109)
Q Consensus 180 ~~~~~~~~~~~iq~-----~a~~~~G~SGgPv~n~~G---~vVGi~~~~~ 221 (1109)
.....+ ..|=+ ....-.|.|||||+-.++ .++||.+.+.
T Consensus 165 ~~~~~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~ 211 (237)
T 2f91_A 165 ADEILD---SMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGY 211 (237)
T ss_dssp TTTSCT---TEEEECCTTCCCBCCTTCTTCEEEECTTSSCEEEEEEEEES
T ss_pred CCCcCC---CeEEEecCCCCCCCCCCcCCCCeEEecCCCEEEEEEEEecC
Confidence 001111 11222 123457999999985432 7999998764
No 439
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=5.5e-06 Score=75.91 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=49.1
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
+++|..|.++|||+ +||++||.|++|||+++.+ +.++...++. .++.+.|+ +.|++
T Consensus 32 ~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~--~g~~v~l~-v~R~~ 89 (96)
T 2edv_A 32 PLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILRE--AEDSLSIT-VVRCT 89 (96)
T ss_dssp SCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHH--CSSCEEEE-EEECC
T ss_pred CeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEE-EEECC
Confidence 67999999999996 9999999999999999977 7778888887 48889998 67765
No 440
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=97.97 E-value=1.6e-05 Score=80.85 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=50.9
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeC--CCHHHHHHHHHhCCCCceEEEEEEEeC
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVRTVHLN 1067 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v--~~l~~f~~~l~~~~~~~~v~l~~v~rd 1067 (1109)
.+++|..|.+||||+++| |++||+|++|||+++ .++++++..++. .+..++|+ +.|+
T Consensus 111 ~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~--~g~~v~L~-V~R~ 170 (170)
T 3egg_C 111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN--TKGRVRFM-IGRE 170 (170)
T ss_dssp BEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH--CCSEEEEE-EEEC
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCEEEEE-EEeC
Confidence 489999999999999999 999999999999999 667899999998 47789998 6664
No 441
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=97.96 E-value=2.4e-05 Score=75.38 Aligned_cols=55 Identities=20% Similarity=0.377 Sum_probs=46.3
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIER 353 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R 353 (1109)
.+++| ..|.++|||++ | |++||+|++|||+++. ++.++..++... +..+.|+|.|
T Consensus 45 ~~~~V-~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r 103 (125)
T 3hpk_A 45 PCLYI-VQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV-KGEVTIHYNK 103 (125)
T ss_dssp SSEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEEE
T ss_pred CCEEE-EEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEE
Confidence 56666 79999999999 9 9999999999999998 567777777654 4569999887
No 442
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.96 E-value=5.7e-06 Score=78.77 Aligned_cols=59 Identities=31% Similarity=0.469 Sum_probs=47.6
Q ss_pred CCceEEEEEecCCCccccCCCCCCEEEEECCEEeCChhHH--HHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLKL--ETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~gL~~GD~Il~VnG~~v~~~~~l--~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||+.||++||+|++|||+++.++.+. ..++.. .++.+.|+|.|.++
T Consensus 45 ~~gv~V-~~V~~~spA~~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~ 105 (117)
T 2csj_A 45 ETSIVI-SDVLPGGPADGLLQENDRVVMVNGTPMEDVLHSFAVQQLRK-SGKIAAIVVKRPRK 105 (117)
T ss_dssp CCBCEE-EEECTTSSHHHHBCTTCEEEEESSCBCBTCCHHHHHHHHHH-SCSEEEEEEEEEEE
T ss_pred CCCEEE-EEECCCCcccccCCCCCEEEEECCEECCCcCHHHHHHHHhc-CCCeEEEEEEECCc
Confidence 467777 799999999669999999999999999886443 344443 68899999999654
No 443
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.95 E-value=8e-06 Score=75.89 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=50.2
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCC--HHHHHHHHHhC---CCCceEEEEEEEeCC
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPD--LEAFVNVTKEI---EHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~--l~~f~~~l~~~---~~~~~v~l~~v~rdg 1068 (1109)
.++|..+.++|||+++| |++||.|++|||+++.+ ++++.+.+++. ..++.+.+. +.|.+
T Consensus 33 ~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~-v~r~~ 97 (103)
T 1ufx_A 33 LPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFL-VTEFN 97 (103)
T ss_dssp SCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEE-ECCCC
T ss_pred cEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEE-EEEcc
Confidence 34899999999999999 99999999999999976 99999999885 147778887 45544
No 444
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=97.95 E-value=0.00017 Score=77.36 Aligned_cols=182 Identities=15% Similarity=0.159 Sum_probs=98.4
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC-CeEEEEEecC---------CeEEEEEEEEEcCC
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-PVVAEAMFVN---------REEIPVYPIYRDPV 116 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~-~~~~~v~~~~---------~~~~~a~vv~~d~~ 116 (1109)
|-+|.|.... .....++|.+|+++ +|||+||++... +..+.+.+.. ...+..+-+..+|.
T Consensus 13 Pw~v~l~~~~--------~~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~ 82 (238)
T 1ym0_A 13 PWQVSVRRKS--------SDSHFCGGSIINDR--WVVCAAHCMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVNEN 82 (238)
T ss_dssp TTEEEEEEGG--------GTEEEEEEEEEETT--EEEECHHHHTTCCGGGEEEEESCSBTTSCCSSCEEEEEEEEEECTT
T ss_pred CCEEEEEeCC--------CCceEEEEEEeeCC--EEEECHHhCCCCCCceEEEEEcccccCCCCCCceEEEEEEEEECCC
Confidence 5677776531 12467999999964 999999999753 3445666542 34566666666654
Q ss_pred -------CcEEEEEEcCCCcccccccCCCCCCcc-CCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCCCC
Q 001276 117 -------HDFGFFRYDPSAIQFLNYDEIPLAPEA-ACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHYKK 180 (1109)
Q Consensus 117 -------~DlAlLk~~~~~~~~~~l~~l~l~~~~-~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~~--~~~~~~ 180 (1109)
+||||||++..-.-...+.++.|.... ...|+.+.+.|+..... .......+.-+... ...|..
T Consensus 83 y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~ 162 (238)
T 1ym0_A 83 YDPATLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTS 162 (238)
T ss_dssp CCTTTCTTCCEEEEESSCCCCSSSCCCCBCCCTTCCCTTCEEEEEESCCSSTTCCSCCSBCEEEEEEECCHHHHHHHCTT
T ss_pred CCCCCCcccEEEEEeCCCccccCcccccCCCCCcCCCCCCceEEEeecCCCCCCCcCCccceEEEEEeeCHHHHhHhhcc
Confidence 699999997532101123344443222 12899999999764321 11222222222110 000111
Q ss_pred CCccccceeeEEEe-------eccCCCCCCCceecC--CC--cEEEEeccccCCC--CCccccchHHHHHHHHH
Q 001276 181 DGYNDFNTFYMQAA-------SGTKGGSSGSPVIDW--QG--RAVALNAGSKSSS--ASAFFLPLERVVRALRF 241 (1109)
Q Consensus 181 ~~~~~~~~~~iq~~-------a~~~~G~SGgPv~n~--~G--~vVGi~~~~~~~~--~~~falP~~~i~~~l~~ 241 (1109)
....+ ..|=+. ...-.|.|||||+-. +| .++||.+.+..-. ..+.+..+...+..+++
T Consensus 163 ~~~~~---~~~Ca~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~C~~~~p~vyt~v~~~~~WI~~ 233 (238)
T 1ym0_A 163 DTIYD---DMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCASGYPGVYSRVGFHAGWITD 233 (238)
T ss_dssp SCCCT---TEEEEECSSCSSSCBCCTTTTTCEEEEECTTCCEEEEEEEEECSSSSSSSCEEEEEHHHHHHHHHH
T ss_pred cccCC---CeEEecCCCCCCcCccCCCccCCeeEEECCCCCEEEEEEEeECCCCCCCCCcEEEEHHHhHHHHHH
Confidence 01111 112221 345569999999854 45 6999998764321 22334444444444443
No 445
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A
Probab=97.95 E-value=0.00023 Score=76.80 Aligned_cols=161 Identities=16% Similarity=0.213 Sum_probs=89.7
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC--CeEEEEEecC---------CeEEEEEEEEEc
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFVN---------REEIPVYPIYRD 114 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~--~~~~~v~~~~---------~~~~~a~vv~~d 114 (1109)
-|-+|.|... .....++|.+|+++ +|||+||++... +..+.+.+.. ...+...-++.+
T Consensus 29 ~Pw~v~l~~~---------~~~~~CgGsLIs~~--~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~~h 97 (247)
T 1ddj_A 29 WPWQVSLRTR---------FGMHFCGGTLISPE--WVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLE 97 (247)
T ss_dssp STTEEEEECT---------TSCEEEEEEEEETT--EEEECGGGGTTCSCGGGCEEEESCSBSSSCCTTCEEEEEEEEEEC
T ss_pred CCcEEEEEcC---------CCCeEEEEEEeeCC--EEEEcHHHcCCCCCCccEEEEEcccccCccCCceEEEEeeeEEcC
Confidence 3567777531 12467999999964 999999999743 2344555432 234555556666
Q ss_pred C-CCcEEEEEEcCCC-cccccccCCCCC--CccCCCCCEEEEEecCCCCC----CeEEEEEEEEecC---CCCCCCCCCc
Q 001276 115 P-VHDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK----VSILAGTLARLDR---DAPHYKKDGY 183 (1109)
Q Consensus 115 ~-~~DlAlLk~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~----~si~~G~vs~~~~---~~~~~~~~~~ 183 (1109)
| .+||||||++..- +. -.+.++.|. ...+..|+.+++.|+..... .......+.-+.. ....+.....
T Consensus 98 p~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~~ 176 (247)
T 1ddj_A 98 PTRKDIALLKLSSPAVIT-DKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRV 176 (247)
T ss_dssp TTSCSCEEEEESSCCCCC-SSCCCCBCCCTTCCCCTTCEEEEEECCCCSSSTTTTBCEEEEEEEECHHHHTSTTTTTTCC
T ss_pred CCCCcEEEEEeCCceeeC-CCEEeeecCCcccCCCCCCEEEEEEcccCCCCCCCccceEEeeeecCHHHhcchhccCCCC
Confidence 6 4899999998542 11 122333333 33457799999999864321 1122222222211 1100101111
Q ss_pred cccceeeEEEe-----eccCCCCCCCceec-CCC--cEEEEecccc
Q 001276 184 NDFNTFYMQAA-----SGTKGGSSGSPVID-WQG--RAVALNAGSK 221 (1109)
Q Consensus 184 ~~~~~~~iq~~-----a~~~~G~SGgPv~n-~~G--~vVGi~~~~~ 221 (1109)
.+ ..+=+. ...-.|.|||||+- .+| .++||.+.+.
T Consensus 177 ~~---~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~ 219 (247)
T 1ddj_A 177 QS---TELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGL 219 (247)
T ss_dssp CT---TEEEESCSSSCCCBCCSCTTCEEEEECSSSEEEEEEECGGG
T ss_pred cC---CeEeecCCCCCCccccCcCcCcEEEEECCcEEEEEEEEECC
Confidence 11 112221 23457999999984 334 5999998765
No 446
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.95 E-value=1.3e-05 Score=94.01 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=65.8
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe----------EEEEEEe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK----------PRVLTLK 1076 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~----------~~~i~lk 1076 (1109)
|++|..|.+||||+++||++||.|++|||+++.+ ++++...|+..+.|+.++|+ +.|++. ...+.++
T Consensus 24 Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~-V~r~g~~~~~~~~~~~g~s~yVr 102 (468)
T 3shw_A 24 GIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL-AQKKKDVYRRIVESDVGDSFYIR 102 (468)
T ss_dssp EEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEE-EEECHHHHHHHHHHTCCCCEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE-EEECCccchhhhccccccccccc
Confidence 8999999999999999999999999999999988 99999999997779999999 778653 2244577
Q ss_pred eCCccCcce
Q 001276 1077 QDLHYWPTW 1085 (1109)
Q Consensus 1077 ~~~~y~pt~ 1085 (1109)
..++|-|.-
T Consensus 103 alfdy~~~~ 111 (468)
T 3shw_A 103 THFEYEKES 111 (468)
T ss_dssp ECSCBCCSS
T ss_pred cccCcCCCC
Confidence 778887755
No 447
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.94 E-value=1.6e-05 Score=72.80 Aligned_cols=57 Identities=25% Similarity=0.401 Sum_probs=47.2
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcC-CCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDG-VDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~-~g~~v~l~v~R~g~ 356 (1109)
.|++| ..|.++ |++ ||++||+|++|||+++.++ .++..++... .|+.+.|+|.|+++
T Consensus 32 ~Gv~V-~~v~~~--a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 92 (96)
T 1ujv_A 32 TGQRV-KQILDI--QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92 (96)
T ss_dssp TEEEE-EEESCG--GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred CCEEE-EEEecc--cccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence 47666 688883 566 9999999999999999875 7888888765 48999999999875
No 448
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.94 E-value=7.4e-06 Score=78.85 Aligned_cols=59 Identities=19% Similarity=0.377 Sum_probs=47.3
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCEE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++.++. ++..++.. .++.+.|+|.|+++.
T Consensus 51 ~gv~V-~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~~ 113 (124)
T 2daz_A 51 MSIFV-VGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKT-APSKVKLVFIRNEDA 113 (124)
T ss_dssp CCEEE-EEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHH-SCSEEEEEEEECTTH
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCCc
Confidence 57666 79999999999 9 9999999999999997744 44344433 467999999998754
No 449
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.94 E-value=1.4e-05 Score=92.32 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=64.7
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCe----------EEEEEEe
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGK----------PRVLTLK 1076 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~----------~~~i~lk 1076 (1109)
|++|..|.+||||+++||++||.|++|||+++.+ ++++...++..+.|+.++|+ +.|++. ...+-++
T Consensus 32 gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~-v~r~~~~~~~~~~~~~~~~~~vr 110 (391)
T 3tsz_A 32 GIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL-AQKKKDVYRRIVESDVGDSFYIR 110 (391)
T ss_dssp EEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEE-EEECHHHHGGGTSSCCSCCEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEE-EeeCCcccccccccccccccccc
Confidence 8999999999999999999999999999999977 99999999986669999999 677652 2345667
Q ss_pred eCCccCcce
Q 001276 1077 QDLHYWPTW 1085 (1109)
Q Consensus 1077 ~~~~y~pt~ 1085 (1109)
..++|-|..
T Consensus 111 al~dy~~~~ 119 (391)
T 3tsz_A 111 THFEYEKES 119 (391)
T ss_dssp ECSCBCCSS
T ss_pred cccccCCCC
Confidence 777787754
No 450
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*
Probab=97.94 E-value=0.00029 Score=76.49 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=64.1
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC--CeEEEEEecC---------CeEEEEEEEEEcC
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFVN---------REEIPVYPIYRDP 115 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~--~~~~~v~~~~---------~~~~~a~vv~~d~ 115 (1109)
|-+|.|... ....++|.+|++ .+|||+||++... .....+.+.. ...+..+-+..+|
T Consensus 13 Pw~v~l~~~----------~~~~CgGtLI~~--~~VLTAAhC~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp 80 (261)
T 3gyl_B 13 PWQVSITYE----------GVHVCGGSLVSE--QWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHP 80 (261)
T ss_dssp TTEEEEEET----------TEEEEEEEECSS--SEEEECGGGSCTTSCGGGEEEEESCSBTTSCCSSCEEECEEEEEECT
T ss_pred CcEEEEeeC----------CceEEEEEEEcC--CEEEECHHHCCCCCCcccEEEEeCceeccCCCCCceEEEEEEEEECC
Confidence 557777642 246799999996 4999999999532 3345555542 2356666667776
Q ss_pred C-------CcEEEEEEcCCC-cccccccCCCC--CCccCCCCCEEEEEecCC
Q 001276 116 V-------HDFGFFRYDPSA-IQFLNYDEIPL--APEAACVGLEIRVVGNDS 157 (1109)
Q Consensus 116 ~-------~DlAlLk~~~~~-~~~~~l~~l~l--~~~~~~~G~~V~~iG~p~ 157 (1109)
. +||||||++..- +. ..+.++.| ....+..|+.+.+.|+..
T Consensus 81 ~y~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~ 131 (261)
T 3gyl_B 81 SYLQEGSQGDIALLQLSRPITFS-RYIRPISLPAAQASFPNGLHCTVTGWGH 131 (261)
T ss_dssp TCCSTTCSCCCEEEEESSCCCCB-TTBCCCBCCCTTCCCCTTCEEEEEESSC
T ss_pred CcCCCCCCCcEEEEEECCCccCC-CceeccCCCCcccCCCCCCEEEEEecCC
Confidence 5 599999997532 11 12333333 344566899999999863
No 451
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=8.9e-06 Score=75.08 Aligned_cols=58 Identities=26% Similarity=0.397 Sum_probs=46.6
Q ss_pred CceEEEEEecCCCcccc--CCCCCCEEEEECCEEeCCh-hHHHHHHhcCCCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVITQF-LKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~~~-~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
.+++| ..|.++|||++ ||++||+|++|||+++.++ .++...+.. .++.+.|+|.|+++
T Consensus 35 ~~v~V-~~V~~~spA~~agGL~~GD~I~~ing~~v~~~~~~~~~~~~~-~~~~v~l~v~R~~~ 95 (100)
T 2edp_A 35 EPLTV-SKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQEALILIKG-SFRILKLIVRRRNS 95 (100)
T ss_dssp EEEEE-CCCCTTSHHHHHTSCCTTCEEEEETTEECCSCSHHHHHHHHT-CCSSCEEEEEECCC
T ss_pred CCeEE-EEECCCCHHHHcCCCCCCCEEEEECCEEccchHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 35555 79999999998 7999999999999999985 334444443 47889999999875
No 452
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Probab=97.93 E-value=0.00033 Score=75.74 Aligned_cols=167 Identities=13% Similarity=0.111 Sum_probs=92.7
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC--CeEEEEEec---------CCeEEEEEEEEEc
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV---------NREEIPVYPIYRD 114 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~--~~~~~v~~~---------~~~~~~a~vv~~d 114 (1109)
-|-+|.|...... .......++|.+|++ .+|||+||++... +..+.|.+. +...+..+-+..+
T Consensus 12 ~Pw~v~l~~~~~~----~~~~~~~CgGtLI~~--~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~H 85 (252)
T 1rtf_B 12 HPWQAAIFAKHRR----SPGERFLCGGILISS--CWILSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVEKYIVH 85 (252)
T ss_dssp STTEEEEEEEC--------CEEEEEEEEECSS--SEEEECGGGGTTCCCGGGEEEEESCSBSSSCCTTCEEEEEEEEEEC
T ss_pred cCCEEEEEEecCC----CCCCCEEEEEEEEeC--CEEEECHHHCCCCCCcccEEEEeCcccccCCCCcceEEEEEEEEeC
Confidence 3667888754211 122346799999996 4999999999743 344566653 2345666666666
Q ss_pred CC-------CcEEEEEEcCCC---ccc-ccccCCCCC--CccCCCCCEEEEEecCCCCC------CeEEEEEEEEecC--
Q 001276 115 PV-------HDFGFFRYDPSA---IQF-LNYDEIPLA--PEAACVGLEIRVVGNDSGEK------VSILAGTLARLDR-- 173 (1109)
Q Consensus 115 ~~-------~DlAlLk~~~~~---~~~-~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~-- 173 (1109)
|. +||||||++... +.+ ..+.++.|. ...+..|+.+.+.|+..... .......+.-+..
T Consensus 86 p~y~~~~~~~DIALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~ 165 (252)
T 1rtf_B 86 KEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSR 165 (252)
T ss_dssp TTCCTTTCTTCCEEEEECCSSSCCSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEEECCGGG
T ss_pred CCCCcCCCCCCEEEEEECCccccccccCCceeceeCCCccccCCCCCEEEEEEcCCCCCCCccccchheEeeeEEecHHH
Confidence 54 699999997541 111 123333343 33456789999999754321 1222222222221
Q ss_pred CCCCCC-CCCccccceeeEEEe-----------eccCCCCCCCceecC-CC--cEEEEecccc
Q 001276 174 DAPHYK-KDGYNDFNTFYMQAA-----------SGTKGGSSGSPVIDW-QG--RAVALNAGSK 221 (1109)
Q Consensus 174 ~~~~~~-~~~~~~~~~~~iq~~-----------a~~~~G~SGgPv~n~-~G--~vVGi~~~~~ 221 (1109)
-...+. .....+ ..+=+. ...-.|.|||||+-. +| .++||.+.+.
T Consensus 166 C~~~~~~~~~~~~---~~~Ca~~~~~~~~~~~~~~~C~GDsGgPL~~~~~~~~~l~Gi~S~g~ 225 (252)
T 1rtf_B 166 CTSQHLLNRTVTD---NMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGL 225 (252)
T ss_dssp SSTTTTTTCCCCT---TEEEEECCC------CCCBCCTTCTTCEEEEEETTEEEEEEEEEECS
T ss_pred hhhhhccCCCCCC---CEEEecCCCCCCccCCCCccccCCCcCceEEEeCCcEEEEEEEEEcC
Confidence 100110 001111 112221 235569999999843 45 6999998764
No 453
>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}
Probab=97.93 E-value=7.9e-05 Score=76.68 Aligned_cols=154 Identities=13% Similarity=0.045 Sum_probs=95.6
Q ss_pred eeeEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEe-----EEEEEeeCCCcEEEEEECCCCCCccccccee
Q 001276 649 HFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIP-----GEVVFLHPVHNFALIAYDPSSLGVAGASVVR 723 (1109)
Q Consensus 649 ~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~-----a~vv~~dp~~dlAilk~d~~~l~~~~~~~v~ 723 (1109)
...|+|++|.. ....++||++|++..+...+.. ..+ +..++ .+.-..|+..|+||+++.+.-. +.-.++
T Consensus 26 ~h~G~g~~V~~-~G~~~LlTA~Hv~~~~~~~~~~-~k~-g~~ip~~~~~~~~~~~d~~~D~all~vp~~~~---s~lg~~ 99 (191)
T 1zyo_A 26 TTIGFGCRTKI-DGEDCLLTAHHVWCNSMRPTGL-AKA-GKQVSVEDWEISMSSSDKMLDFAIVRVPTHVW---SKLGVK 99 (191)
T ss_dssp EEEEEEEEEEC---CEEEEECHHHHTSSSCCCEE-EET-TEEEECCSCEEEEEECCTTTCEEEEECCHHHH---HHHTCC
T ss_pred eEEEEEEEEEE-CCCcEEEEChhhCcCCcceeee-cCC-CCEEEcccceeeEccCCCCCcEEEEEcCCChh---hhcCcc
Confidence 45899999972 3467999995554443232222 333 55544 4444568899999999976411 123355
Q ss_pred ceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCcccccceeEEEEeccc-CCCCCceEEcCCee
Q 001276 724 AAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNMEVIELDTDF-GSTFSGVLTDEHGR 802 (1109)
Q Consensus 724 ~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~~~~~~I~~d~~i-g~~sGGpL~d~~G~ 802 (1109)
++.|.+ ...++.|.++|++.+..+....+... +. . +-..+++++.. ..+||.|++|.+ .
T Consensus 100 ~a~~~~---~~~~~~vt~yg~~~~~~~~s~~g~~~-------~~-----~----~~~~~~~~~~T~~G~SGsP~~ng~-~ 159 (191)
T 1zyo_A 100 STPLVC---PSSKDVITCYGGSSSDCLMSGVGSSS-------TS-----E----FTWKLTHTCPTAAGWSGTPLYSSR-G 159 (191)
T ss_dssp CCCBCC---CCSCEEEEEEEESSTTSEEEEEEEEE-------EC-----S----STTEEEECCCCCTTCTTCEEECSS-C
T ss_pred eeEeec---CCCCccEEEEeecCCCCEeeccccee-------ec-----c----CCcEEEEEcCCCCCCCCCcEEcCC-e
Confidence 666754 34699999999987766654433221 00 0 01345666665 336999999986 7
Q ss_pred EEEEEeeccccccccCCCCCCceeEecccHHHHHHH
Q 001276 803 VQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRV 838 (1109)
Q Consensus 803 VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~ 838 (1109)
||||...+... -.+++|+.+..++.+
T Consensus 160 IVGvh~G~~~~----------~~~N~a~n~~~~~~~ 185 (191)
T 1zyo_A 160 VVGMHVGFEEI----------GKLNRGVNMFYVANY 185 (191)
T ss_dssp EEEEEEEEEET----------TTEEEEECHHHHHHH
T ss_pred EEEEEeCcccC----------CceeeeeehHHHhhh
Confidence 88997764221 235577888877765
No 454
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=97.93 E-value=2.2e-05 Score=73.71 Aligned_cols=59 Identities=24% Similarity=0.182 Sum_probs=52.3
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCCC--HHHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPD--LEAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~--l~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
+.+|.++.+ ||+.+||++||.|++|||+++.+ ++++++.|++.+.++.++|+ +.|+|.+
T Consensus 35 g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~-V~R~g~~ 95 (113)
T 3soe_A 35 GQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLL-ILRGGPP 95 (113)
T ss_dssp EEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEE-EEESSCC
T ss_pred CcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE-EEECCcc
Confidence 567888887 68899999999999999999995 47999999998889999999 8888864
No 455
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.92 E-value=3.5e-06 Score=79.40 Aligned_cols=60 Identities=25% Similarity=0.342 Sum_probs=49.5
Q ss_pred CCCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 295 GETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 295 ~~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
...|++| ..|.++|||++ | |++||+|++|||+++. ++.++..++.. .++.+.|+|.|+..
T Consensus 42 ~~~gv~V-~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 105 (111)
T 1uju_A 42 TDEGIFI-SKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS-VGDTLTVLVCDGFE 105 (111)
T ss_dssp TCCCCEE-EEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS-CSSEEEECCCCCCC
T ss_pred CCCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCC
Confidence 3467777 79999999999 9 9999999999999999 56666666544 68899999988653
No 456
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B
Probab=97.92 E-value=9e-05 Score=79.24 Aligned_cols=162 Identities=14% Similarity=0.089 Sum_probs=89.4
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC---CeEEEEEec----------CCeEEEEEEEE
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG---PVVAEAMFV----------NREEIPVYPIY 112 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~---~~~~~v~~~----------~~~~~~a~vv~ 112 (1109)
-|-+|.|... ....++|.+|+++ +|||+||++... +....+.+. ....+..+-+.
T Consensus 12 ~Pw~v~l~~~----------~~~~CgGtLI~~~--~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~v~~i~ 79 (235)
T 4dgj_A 12 WPWVVGLYYD----------DRLLCGASLVSSD--WLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIV 79 (235)
T ss_dssp STTEEEEEET----------TEEEEEEEECSSS--EEEECHHHHTTSCSSGGGEEEEESCCBTTCCSCTTCEEEEEEEEE
T ss_pred CCcEEEEeeC----------CCeEEEEEEeeCC--EEEECHHhcCCCCCCCccEEEEEeeecccccCCCceeEEeEEEEE
Confidence 3557777642 2467999999964 999999999532 234455443 12345556666
Q ss_pred EcCC-------CcEEEEEEcCCCcccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CC
Q 001276 113 RDPV-------HDFGFFRYDPSAIQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--AP 176 (1109)
Q Consensus 113 ~d~~-------~DlAlLk~~~~~~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~--~~ 176 (1109)
.+|. +|||||+++..-.-...+.++.|. ...+..|+.+.+.|+..... .......+.-+... ..
T Consensus 80 ~hp~y~~~~~~~DiALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~ 159 (235)
T 4dgj_A 80 INPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQ 159 (235)
T ss_dssp ECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTCCBCSBCEEEEEEEECHHHHHH
T ss_pred ECCCCCCCCCCCeEEEEEECCccccCCcccccCCCCcccCCCCCCEEEEEecccCCCCCccchhheEeEeeecCHHHhhh
Confidence 6765 699999997432101123344443 34467899999999853211 11222222222110 00
Q ss_pred CCCCCCccccceeeEEE-----eeccCCCCCCCceecC-CC--cEEEEeccccC
Q 001276 177 HYKKDGYNDFNTFYMQA-----ASGTKGGSSGSPVIDW-QG--RAVALNAGSKS 222 (1109)
Q Consensus 177 ~~~~~~~~~~~~~~iq~-----~a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~ 222 (1109)
.+......+ .++=+ ....-.|.|||||+-. +| .++||.+.+..
T Consensus 160 ~~~~~~~~~---~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~Gi~S~g~~ 210 (235)
T 4dgj_A 160 QMPEYNITE---NMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYE 210 (235)
T ss_dssp HCTTSCCCT---TEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSS
T ss_pred hccCccCCC---CeEeecCCCCCCccCCCCCCCeEEEEECCcEEEEEEEEEcCC
Confidence 011111111 11222 1234579999999853 44 39999987653
No 457
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=97.91 E-value=1.4e-05 Score=72.06 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=44.1
Q ss_pred CceEEEEEecCCCcccc--CCCCCCEEEEECCEEeCChhH--HHHHHhcCCCCeEEEEEEE
Q 001276 297 TGLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVITQFLK--LETLLDDGVDKNIELLIER 353 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~~~~~--l~~~l~~~~g~~v~l~v~R 353 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++.++.. +...+. ..++.+.|+|.|
T Consensus 30 ~g~~V-~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~-~~~~~v~l~v~r 88 (90)
T 1qav_A 30 MPILI-SKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK-KTGKEVVLEVKY 88 (90)
T ss_dssp EEEEE-EEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEEE
T ss_pred CCEEE-EEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCeEEEEEEE
Confidence 56666 79999999997 799999999999999987543 334443 357889999887
No 458
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Probab=97.91 E-value=0.00016 Score=77.94 Aligned_cols=159 Identities=14% Similarity=0.214 Sum_probs=88.9
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec---------CCeEEEEEEEEEcCC
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV---------NREEIPVYPIYRDPV 116 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~---------~~~~~~a~vv~~d~~ 116 (1109)
-|-+|.|... .....++|.+|+++ +|||+||++..... .+.+. ....+.+.-+..+|.
T Consensus 27 ~Pw~v~l~~~---------~~~~~CgGtLI~~~--~VLTAAHC~~~~~~--~v~~G~~~~~~~~~~~~~~~v~~i~~hp~ 93 (245)
T 1t8o_A 27 WPWQVSLQDK---------TGFHFCGGSLINEN--WVVTAAHCGVTTSD--VVVAGEFDQGSSSEKIQKLKIAKVFKNSK 93 (245)
T ss_dssp STTEEEEECT---------TCCEEEEEEEEETT--EEEECGGGCCCTTS--EEEESCSBTTCSSSCCEEEEEEEEEECTT
T ss_pred CCceEEEEcC---------CCCeEEEEEEeeCC--EEEEcHHhCcCCCc--EEEEeeeecCCCCCCcEEEEEEEEEeCCC
Confidence 3567777541 12467999999964 99999999975333 33332 234566666666654
Q ss_pred -------CcEEEEEEcCCC-cccccccCCCCC--CccCCCCCEEEEEecCCCCC------CeEEEEEEEEecCC--CCCC
Q 001276 117 -------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK------VSILAGTLARLDRD--APHY 178 (1109)
Q Consensus 117 -------~DlAlLk~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~~--~~~~ 178 (1109)
+||||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... ..+....+.-+... ...|
T Consensus 94 y~~~~~~~DIALl~L~~~~~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~ 172 (245)
T 1t8o_A 94 YNSLTINNDITLLKLSTAASFS-QTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYW 172 (245)
T ss_dssp CCTTTCCSCCEEEEESSCCCCB-TTBCCCBCCCTTCCCCTTCEEEEEESCCSCC--CCCCSBCEEEEEEEECHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCCcCC-CceeeeECCCCccCCCCCCEEEEEEeCCCCCCCCCCcchheEEEEeeEcchhhhHhh
Confidence 699999998542 11 123333333 34467899999999863321 11222222222110 0001
Q ss_pred CCCCccccceeeEEE---eeccCCCCCCCceecC-CC--cEEEEeccccC
Q 001276 179 KKDGYNDFNTFYMQA---ASGTKGGSSGSPVIDW-QG--RAVALNAGSKS 222 (1109)
Q Consensus 179 ~~~~~~~~~~~~iq~---~a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~ 222 (1109)
+. ...+ .+|=+ ....-.|.|||||+-. +| .++||.+.+..
T Consensus 173 ~~-~~~~---~~~Ca~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~ 218 (245)
T 1t8o_A 173 GT-KIKD---AMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSS 218 (245)
T ss_dssp GG-GCCT---TEEEEECSSCBCCTTCTTCEEEEEETTEEEEEEEEEECCT
T ss_pred cC-cCCC---ceEEccCCCCccCcccCcCCEEEEECCEEEEEEEEEeCCC
Confidence 10 0111 11211 1234579999999853 45 79999987653
No 459
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A
Probab=97.91 E-value=0.00038 Score=76.82 Aligned_cols=180 Identities=12% Similarity=0.116 Sum_probs=100.0
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC--CeEEEEEecC---------CeEEEEEEEEEc
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFVN---------REEIPVYPIYRD 114 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~--~~~~~v~~~~---------~~~~~a~vv~~d 114 (1109)
-|-+|.|... ...++|.+|+++ +|||+||++... ...+.|.+.. ...+..+-+..+
T Consensus 47 ~Pw~v~l~~~-----------~~~CgGsLIs~~--~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~h 113 (283)
T 1yc0_A 47 HPWLAAIYIG-----------DSFCAGSLVHTC--WVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPY 113 (283)
T ss_dssp STTEEEEEET-----------TEEEEEEEEETT--EEEECGGGGTTCCCGGGEEEEESCCBTTCCCSSCEEECEEEEEEC
T ss_pred CCeEEEEEcC-----------CcEEEEEEeeCC--EEEECHHHcCCCCCCceEEEEEeeeecccCCCceEEEeeEEEEec
Confidence 3667777541 467999999964 999999999753 2456666542 234555555554
Q ss_pred C--------CCcEEEEEEcCCC---ccc-ccccCCCCC--CccCCCCCEEEEEecCCCC------CCeEEEEEEEEecC-
Q 001276 115 P--------VHDFGFFRYDPSA---IQF-LNYDEIPLA--PEAACVGLEIRVVGNDSGE------KVSILAGTLARLDR- 173 (1109)
Q Consensus 115 ~--------~~DlAlLk~~~~~---~~~-~~l~~l~l~--~~~~~~G~~V~~iG~p~g~------~~si~~G~vs~~~~- 173 (1109)
| .+||||||++... +.+ ..+.++.|. ...+..|+.+.+.|+.... ........+.-+..
T Consensus 114 p~y~~~~~~~~DIALl~L~~~~~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~L~~~~v~i~~~~ 193 (283)
T 1yc0_A 114 TLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADH 193 (283)
T ss_dssp TTCCTTSTTTTCCEEEEECCBTTBSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCSCCSBCEEEEEEBCCHH
T ss_pred CccccCCCCCCceEEEEeCCCccccccccCceeeeECCCCcCCCCCCCEEEEEEeCccCCCCCccCchheEeEEEEECHH
Confidence 4 3699999998541 111 123344443 3456789999999986432 11222323322221
Q ss_pred --CC-CCCCCCCccccceeeEEEe-----eccCCCCCCCceecC-CC--cEEEEeccccCC---CCCccccchHHHHHHH
Q 001276 174 --DA-PHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDW-QG--RAVALNAGSKSS---SASAFFLPLERVVRAL 239 (1109)
Q Consensus 174 --~~-~~~~~~~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~~---~~~~falP~~~i~~~l 239 (1109)
.. ..|+. ...+ .+|=+. ...-.|.|||||+-. +| .++||.+.+..- ...+.+.-+...+..+
T Consensus 194 ~C~~~~~~~~-~~~~---~~iCa~~~~~~~~~C~GDSGgPL~~~~~g~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI 269 (283)
T 1yc0_A 194 KCSSPEVYGA-DISP---NMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWI 269 (283)
T ss_dssp HHTSTTTTGG-GCCT---TEEEESCSSSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHH
T ss_pred HhcCccccCC-cCCC---CEEeeCCCCCCCccCCCCCCCceEEEECCcEEEEEEEEECCCCCCCCCCeEEEEhhhHHHHH
Confidence 10 01111 1111 122221 234579999999854 45 599999876532 1233344455555555
Q ss_pred HHH
Q 001276 240 RFL 242 (1109)
Q Consensus 240 ~~l 242 (1109)
++.
T Consensus 270 ~~~ 272 (283)
T 1yc0_A 270 NDR 272 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 460
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.89 E-value=5.5e-06 Score=78.86 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=50.3
Q ss_pred CcEEEEEecCCChhhhcCCCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCCeE
Q 001276 1008 HGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNGKP 1070 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg~~ 1070 (1109)
.+++|..|.++|||+ +||++||.|++|||+++.++ +++...++. .++.++|+ +.|.+..
T Consensus 46 ~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~-v~R~~~~ 106 (117)
T 2csj_A 46 TSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRK--SGKIAAIV-VKRPRKV 106 (117)
T ss_dssp CBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHH--SCSEEEEE-EEEEEEC
T ss_pred CCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhc--CCCeEEEE-EEECCcc
Confidence 478999999999997 99999999999999999875 777788887 48889998 6665543
No 461
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.89 E-value=9.8e-06 Score=75.59 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=47.6
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.++ .++...+.. .++.+.|++.|.+.
T Consensus 31 ~~g~~V-~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~~ 92 (106)
T 2eei_A 31 KKGVYM-TDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKK-SGSRVMFLLVDKET 92 (106)
T ss_dssp CCSCEE-CCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHH-HCSEEEEEECCTTT
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcCch
Confidence 467776 79999999999 9999999999999999864 455444433 47789999988764
No 462
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.89 E-value=1.3e-05 Score=76.17 Aligned_cols=59 Identities=15% Similarity=0.312 Sum_probs=47.4
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ | |++||+|++|||+++.+.. ++..++. ..++.+.|+|.|.+.
T Consensus 49 ~~gv~V-~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~r~~~ 111 (117)
T 2ehr_A 49 LKGIFI-KQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIK-NAGNPVVFIVQSLSS 111 (117)
T ss_dssp CCSEEE-EEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHH-TSCSSEEEEECCBSC
T ss_pred cCCEEE-EEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECCC
Confidence 357776 79999999999 9 9999999999999998744 4444444 368889999988544
No 463
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.88 E-value=1.8e-05 Score=73.99 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=47.0
Q ss_pred CCceEEEEEecCCCcccc--CCCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++.+.. ++..++. ..++.+.|+|.|.+.
T Consensus 40 ~~gv~V-~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R~~~ 102 (107)
T 1uhp_A 40 SEGIFV-SKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFK-TAKEPIVVQVLRRTS 102 (107)
T ss_dssp SCCCEE-EEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHH-HCCSSEEEEEEECCS
T ss_pred CCCEEE-EEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCcEEEEEEeCCC
Confidence 467777 79999999998 79999999999999997744 3444443 367889999998653
No 464
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=97.88 E-value=1.4e-05 Score=70.81 Aligned_cols=50 Identities=16% Similarity=0.247 Sum_probs=42.5
Q ss_pred EEecCCCcccc-CCCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEE
Q 001276 303 DSVVPGGPAHL-RLEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIER 353 (1109)
Q Consensus 303 ~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~v~R 353 (1109)
..|.++|||++ ||++||+|++|||+.+.... ++..+|. ..|.+|+|+|..
T Consensus 28 ~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~p 80 (82)
T 1r6j_A 28 TSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIMP 80 (82)
T ss_dssp EEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEE
T ss_pred EEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEEe
Confidence 68999999999 99999999999999997654 5556666 778899998864
No 465
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=97.87 E-value=1.2e-05 Score=74.65 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=45.8
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeEEEEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNIELLI 351 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v~l~v 351 (1109)
..|++| ..|.++|||++ ||++||+|++|||+++. ++.++..++....+ .++|+|
T Consensus 47 ~~~~~V-~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~-~v~l~v 103 (104)
T 2z17_A 47 EMFTLI-CKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGN-LLTIET 103 (104)
T ss_dssp SCCEEE-EEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHHHTTT-EEEEEC
T ss_pred CCCeEE-EEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEE
Confidence 456666 79999999999 99999999999999999 88999988876644 777764
No 466
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2
Probab=97.87 E-value=0.00028 Score=76.41 Aligned_cols=163 Identities=12% Similarity=0.097 Sum_probs=91.1
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC----------CeEEEEEEEEEcC
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN----------REEIPVYPIYRDP 115 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~----------~~~~~a~vv~~d~ 115 (1109)
-|-+|.|.... .......++|.+|+++ +|||+||++. ......|.+.. ...+..+-+..+|
T Consensus 25 ~Pw~v~l~~~~------~~~~~~~CgGtLIs~~--~VLTAAHC~~-~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~Hp 95 (251)
T 1pyt_D 25 WPWQISLQYLR------DNTWRHTCGGTLITPN--HVLTAAHCIS-NTLTYRVALGKNNLEVEDEAGSLYVGVDTIFVHE 95 (251)
T ss_dssp STTEEEEEEEE------TTEEEEEEEEEEEETT--EEEECGGGCC-TTCCEEEEESCSBTTCSCCSSCEEEEEEEEEECT
T ss_pred CCceEEEEEEc------CCCcceEEEeEEecCC--EEEECHHHhC-CCceEEEEEcccccccCCCCCcEEEEEEEEEECC
Confidence 46688887532 1112467999999964 9999999998 44556666532 2345566666665
Q ss_pred C-------CcEEEEEEcCCC-cccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---CCCC
Q 001276 116 V-------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---DAPH 177 (1109)
Q Consensus 116 ~-------~DlAlLk~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~---~~~~ 177 (1109)
. +||||||++..- +. ..+.++.|. ...+..|+.+.+.|+..... ..+....+.-+.. ....
T Consensus 96 ~y~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~ 174 (251)
T 1pyt_D 96 KWNSFLVRNDIALIKLAETVELG-DTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRD 174 (251)
T ss_dssp TCBTTTTBSCCEEEEESSCCCCC-SSCCCCBCCCTTCCCCTTCEEEECBCCCSSCCSCCCSBCBCCEEECBCHHHHTSTT
T ss_pred CCCCCCCCCCEEEEEECCCcccC-CCeeeeEcCCCcccCCCCCEEEEEecccCCCCCCcccchheeEeEeeCHHHcchhh
Confidence 4 699999997542 11 123333333 33456799999999764321 1111111111111 0000
Q ss_pred CCCCCccccceeeEEEe----eccCCCCCCCceec-CCC--cEEEEecccc
Q 001276 178 YKKDGYNDFNTFYMQAA----SGTKGGSSGSPVID-WQG--RAVALNAGSK 221 (1109)
Q Consensus 178 ~~~~~~~~~~~~~iq~~----a~~~~G~SGgPv~n-~~G--~vVGi~~~~~ 221 (1109)
+......+ .+|=+. ...-.|.|||||+- .+| .++||.+.+.
T Consensus 175 ~~~~~~~~---~~~Ca~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~ 222 (251)
T 1pyt_D 175 WWGTTVKE---TMVCAGGDGVISACNGDSGGPLNCQADGQWDVRGIVSFGS 222 (251)
T ss_dssp TTTTTCCT---TEEEECCSCSSCCCCSCTTCEEEEESSSSEEEEEEEEECC
T ss_pred ccCCCcCC---CeEEecCCCCCccCCCCCCCceEEEECCCEEEEEEEEECC
Confidence 00001111 122221 23457899999984 356 6999998764
No 467
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=97.87 E-value=2.3e-05 Score=79.67 Aligned_cols=57 Identities=26% Similarity=0.490 Sum_probs=47.0
Q ss_pred CCceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEEC
Q 001276 296 ETGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERG 354 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~ 354 (1109)
..|++| ..|.++|||++ | |++||+|++|||+.+.+ +.++..+|.. .|..|.|+|.|+
T Consensus 110 ~~gi~V-~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~g~~v~L~V~R~ 170 (170)
T 3egg_C 110 KLGIFV-KTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGRE 170 (170)
T ss_dssp SBEEEE-EEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH-CCSEEEEEEEEC
T ss_pred CCCEEE-EEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEeC
Confidence 356665 79999999999 9 99999999999999954 5555566655 678999999985
No 468
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}
Probab=97.86 E-value=0.00011 Score=81.32 Aligned_cols=183 Identities=9% Similarity=0.020 Sum_probs=98.7
Q ss_pred HhCCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec------CCeEEEEEEEEEcCC-
Q 001276 44 KVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV------NREEIPVYPIYRDPV- 116 (1109)
Q Consensus 44 ~~~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~------~~~~~~a~vv~~d~~- 116 (1109)
.--|-+|.|... .....++|.+|+++ +|||+||++.. ...+.|.+. ....+.++-+..+|.
T Consensus 62 ~~~Pw~v~l~~~---------~~~~~CgGtLI~~~--~VLTAAHC~~~-~~~~~V~~G~~~~~~~~~~~~v~~i~~Hp~y 129 (283)
T 3f1s_B 62 QDLPWQVKLTNS---------EGKDFCGGVIIREN--FVLTTAKCSLL-HRNITVKTYFNRTSQDPLMIKITHVHVHMRY 129 (283)
T ss_dssp -CCTTEEEEECT---------TSCEEEEEEEEETT--EEEECHHHHTS-CSSCEEEECTTC-CCCCEEEEEEEEEECTTC
T ss_pred cccCCEEEEEec---------CCCeeeccEEecCC--EEEEcHHhcCc-cCceEEEEeeeeCCCCcEEEEeEEEEECCCC
Confidence 346777877641 23467999999964 99999999973 345666664 235566666777764
Q ss_pred ------CcEEEEEEcCCCcccccccCCCCCCc-----cCCCCCEEEEEecCCCCC---CeEEEEEEEEecCC--CCCCCC
Q 001276 117 ------HDFGFFRYDPSAIQFLNYDEIPLAPE-----AACVGLEIRVVGNDSGEK---VSILAGTLARLDRD--APHYKK 180 (1109)
Q Consensus 117 ------~DlAlLk~~~~~~~~~~l~~l~l~~~-----~~~~G~~V~~iG~p~g~~---~si~~G~vs~~~~~--~~~~~~ 180 (1109)
+||||||++..-.-...+.++.|... .+..|+..++.|+..... .......+..+.+. ...|+.
T Consensus 130 ~~~~~~nDIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~L~~~~v~~~~~~~C~~~~~~ 209 (283)
T 3f1s_B 130 DADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGNSLTTRPVTLVEGEECGQVLNV 209 (283)
T ss_dssp BTTTTBTCCEEEEESSCCCTTTTCCCCBCCCHHHHHHTTTTTSCEEEEECBCC-------CEEEEEEEECHHHHHHHHTS
T ss_pred CCCCCCCCEEEEEeCCcccCCCCEEeEECCCCccccccccCCCEEEEEECCCCCCCCCceeeEEEEeEeCHHHHhhhhcC
Confidence 69999999753211112344444432 467899999999864111 11111122222110 000110
Q ss_pred CCccccceeeEEE--eeccCCCCCCCceec-CCCc--EEEEeccccCC--CCCccccchHHHHHHHHHH
Q 001276 181 DGYNDFNTFYMQA--ASGTKGGSSGSPVID-WQGR--AVALNAGSKSS--SASAFFLPLERVVRALRFL 242 (1109)
Q Consensus 181 ~~~~~~~~~~iq~--~a~~~~G~SGgPv~n-~~G~--vVGi~~~~~~~--~~~~falP~~~i~~~l~~l 242 (1109)
...+ .+|=+ ......|.|||||+- .+|+ ++||++.+.-. ...+.+.-+...+..+++.
T Consensus 210 -~~~~---~~~Ca~~~~~~~~gDSGgPlv~~~~~~~~l~GIvS~g~c~~~~~p~vyt~V~~y~~WI~~~ 274 (283)
T 3f1s_B 210 -TVTT---RTYCERSSVAAMHWMDGSVVTREHRGSWFLTGVLGSQPVGGQAHMVLVTKVSRYSLWFKQI 274 (283)
T ss_dssp -CCCT---TEEEEECSSCGGGBCTTCEEEEECSSCEEEEEEECCCSGGGCSSEEEEEEGGGGHHHHHHH
T ss_pred -CCCC---CeEcccCCCCCCCCCCCCcEEEEECCEEEEEEEEEeCCCCCCCcceEEEEhHHhHHHHHHH
Confidence 0111 11111 112335799999985 4566 99999764311 1122344444445554443
No 469
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=97.86 E-value=1.4e-06 Score=91.99 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=61.7
Q ss_pred cEEEEEecCCChhhhcCCCCCCeEEEECCeeCC--CHHHHHHHHHhCCCCceE-EEEEEEeCCeEE--EEEEeeCCccCc
Q 001276 1009 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTP--DLEAFVNVTKEIEHGEFV-RVRTVHLNGKPR--VLTLKQDLHYWP 1083 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~GL~~gD~I~~VNg~~v~--~l~~f~~~l~~~~~~~~v-~l~~v~rdg~~~--~i~lk~~~~y~p 1083 (1109)
+++|..|.+||||+++||++||.|++|||+++. +++++.++++.. ++.+ .|. +.|+|..+ .+.+++.....+
T Consensus 34 gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~--g~~v~~l~-V~R~g~~~~~~v~v~p~~~~~~ 110 (216)
T 2krg_A 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG--GDETKLLV-VDRETDEFFKKCRVIPSQEHLN 110 (216)
T ss_dssp SCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHH--CSEEEEEE-CCHHHHHHHHHHTCCCCGGGGS
T ss_pred CeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc--CCeEEEEE-EEECCEEEEEEEEEEEeeeecC
Confidence 789999999999999999999999999999999 999999999985 7788 776 78888876 556666544433
Q ss_pred c
Q 001276 1084 T 1084 (1109)
Q Consensus 1084 t 1084 (1109)
.
T Consensus 111 ~ 111 (216)
T 2krg_A 111 G 111 (216)
T ss_dssp S
T ss_pred C
Confidence 3
No 470
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.85 E-value=8.3e-06 Score=77.78 Aligned_cols=57 Identities=28% Similarity=0.477 Sum_probs=47.2
Q ss_pred ceEEEEEecCCCcccc--CCCCCCEEEEECCEEeCC--hhHHHHHHhcC---CCCeEEEEEEEC
Q 001276 298 GLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVITQ--FLKLETLLDDG---VDKNIELLIERG 354 (1109)
Q Consensus 298 G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~---~g~~v~l~v~R~ 354 (1109)
|.++|..|.++|||++ ||++||+|++|||+.+.+ +.++..+|... .|+.++|+|.|.
T Consensus 43 ~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~ 106 (118)
T 1v6b_A 43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC 106 (118)
T ss_dssp CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence 4355689999999998 799999999999999998 56777777432 488999999984
No 471
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=1.4e-05 Score=75.66 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=45.2
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECC
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGG 355 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g 355 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++.+ |.++..++.. ..+.|+|.|..
T Consensus 44 ~gv~V-~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~---~~v~l~v~R~p 101 (114)
T 2d8i_A 44 RRLYV-NSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVRTYP 101 (114)
T ss_dssp EEEEE-EECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS---SEEEEEEEECC
T ss_pred CCEEE-EEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC---CcEEEEEEECC
Confidence 35555 79999999999 999999999999999998 4577766653 37888888854
No 472
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=97.85 E-value=1.7e-05 Score=74.16 Aligned_cols=57 Identities=28% Similarity=0.497 Sum_probs=44.7
Q ss_pred CceEEEEEecCCCcccc-C--CCCCCEEEEECCEEeCChhH--HHHHHhcCC---CCeEEEEEEEC
Q 001276 297 TGLLVVDSVVPGGPAHL-R--LEPGDVLVRVNGEVITQFLK--LETLLDDGV---DKNIELLIERG 354 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g--L~~GD~Il~VnG~~v~~~~~--l~~~l~~~~---g~~v~l~v~R~ 354 (1109)
.+++| ..|.++|||++ | |++||+|++|||+++.++.+ +..++.... +..+.|+|.|+
T Consensus 43 ~~~~V-~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r~ 107 (107)
T 3nfk_A 43 MPVIV-SRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN 107 (107)
T ss_dssp EEEEE-EEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEECC
T ss_pred CCeEE-EEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEcC
Confidence 45565 79999999999 9 99999999999999997754 444444432 35899998874
No 473
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.84 E-value=1.1e-05 Score=76.21 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=49.6
Q ss_pred CcEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEEeCC
Q 001276 1008 HGVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVHLNG 1068 (1109)
Q Consensus 1008 ~gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~rdg 1068 (1109)
.+++|..|.++|||+++| |++||.|++|||+++.++ .++...++. .++.+.|. +.|++
T Consensus 39 ~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~--~~~~v~l~-v~r~~ 99 (113)
T 1um7_A 39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR--AGQSVTIV-AQYRP 99 (113)
T ss_dssp CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHS--CCSEEEEE-EECCH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh--CCCcEEEE-EEECc
Confidence 378999999999999999 999999999999999997 677777775 47888888 56554
No 474
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=97.84 E-value=1.8e-05 Score=76.80 Aligned_cols=60 Identities=15% Similarity=0.400 Sum_probs=50.1
Q ss_pred CCceEEEEEecCCCcccc--CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCE
Q 001276 296 ETGLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
..+++| ..|.++|||++ ||++||+|++|||+.+.+ +.++..++....+..+.|+|.|.+.
T Consensus 56 ~~~i~I-~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~ 119 (130)
T 1i16_A 56 DKPLTI-NRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL 119 (130)
T ss_dssp CCCCEE-EEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESS
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCCC
Confidence 346665 79999999998 799999999999999987 5677777777777789999998653
No 475
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=97.84 E-value=3.9e-05 Score=69.41 Aligned_cols=57 Identities=16% Similarity=0.245 Sum_probs=51.8
Q ss_pred cEEEEEecCCChhhhcC-CCCCCeEEEECCeeCCCH--HHHHHHHHhCCCCceEEEEEEE
Q 001276 1009 GVYVARWCHGSPVHRYG-LYALQWIVEINGKRTPDL--EAFVNVTKEIEHGEFVRVRTVH 1065 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~~G-L~~gD~I~~VNg~~v~~l--~~f~~~l~~~~~~~~v~l~~v~ 1065 (1109)
.+||.++.+||||++.| |.+||.|++|||+++..+ ++.++.|++.+.+.+++|+++.
T Consensus 29 ~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~ 88 (95)
T 3gge_A 29 YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIE 88 (95)
T ss_dssp CCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred cEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEEC
Confidence 36899999999999987 799999999999999765 8999999999999999999654
No 476
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Probab=97.81 E-value=4.5e-05 Score=81.99 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=85.5
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec--CC---------eEEEEEEEEEcC
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV--NR---------EEIPVYPIYRDP 115 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~--~~---------~~~~a~vv~~d~ 115 (1109)
|-+|.|.... .......++|.+|+++ +|||+||++.. .....|.+. +. ..+.++-+..+|
T Consensus 11 Pw~v~l~~~~------~~~~~~~CgGtLIs~~--~VLTAAhC~~~-~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~Hp 81 (240)
T 1fon_A 11 SWQVSLQYEK------DGAFHHTCGGSLIAPD--WVVTAGHCIST-SRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHP 81 (240)
T ss_dssp EEEEEEEEEE------TTEEEEEECCEEEETT--EEEECGGGCCT-TSCEEEEEEEEETTEEEEEEEEEEECTTSEEECT
T ss_pred ccEEEEEEec------CCcEeeEEEEEEeeCC--EEEECHHHCCC-CCceEEEeeeeeccccCCCceeEeeeeeEEEECC
Confidence 5567776531 1111367999999964 99999999984 344455443 11 111111234444
Q ss_pred C---------CcEEEEEEcCCC-cccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---C-
Q 001276 116 V---------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---D- 174 (1109)
Q Consensus 116 ~---------~DlAlLk~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~---~- 174 (1109)
. +||||||++..- +. ..+.++.|. ...+..|+.+++.|+..... ..+....+..+.. .
T Consensus 82 ~y~~~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~ 160 (240)
T 1fon_A 82 LWNSNCVACGNDIALVKLSRSAQLG-DKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQ 160 (240)
T ss_dssp TCCTTCGGGCCCCEEEECSSCCCCT-TSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEECHHHHTS
T ss_pred CCcCCCccCCCCEEEEEecCccccC-CcccccCCCCcccCCCCCCeEEEEEEeEcCCCCCCChhheEEEEeeeCHHHhcc
Confidence 2 899999998542 11 122333333 33567899999999763321 1122212221111 1
Q ss_pred CCCCCCCCccccceeeEEEe---eccCCCCCCCceecC--CC--cEEEEecccc
Q 001276 175 APHYKKDGYNDFNTFYMQAA---SGTKGGSSGSPVIDW--QG--RAVALNAGSK 221 (1109)
Q Consensus 175 ~~~~~~~~~~~~~~~~iq~~---a~~~~G~SGgPv~n~--~G--~vVGi~~~~~ 221 (1109)
...++. ...+ .+|=+. ...-.|.|||||+-. +| .++||.+.+.
T Consensus 161 ~~~~~~-~~~~---~~~Ca~~~~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~ 210 (240)
T 1fon_A 161 WDWWGI-TVKK---TMVCAGGDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVS 210 (240)
T ss_dssp TTTTGG-GCCT---TEEEECCSSSCSTTSCTTCEEEEECSSSCEEEEEEEEECC
T ss_pred ceecCC-cccc---ceEeecCCCCcccCCCCCCeEEeEcCCCCEEEEEEEEEcC
Confidence 000110 1111 112221 234579999999842 56 8999998764
No 477
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.80 E-value=2.9e-05 Score=89.67 Aligned_cols=61 Identities=26% Similarity=0.356 Sum_probs=53.3
Q ss_pred CCceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCC--hhHHHHHHhc-CCCCeEEEEEEECCEE
Q 001276 296 ETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQ--FLKLETLLDD-GVDKNIELLIERGGIS 357 (1109)
Q Consensus 296 ~~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~--~~~l~~~l~~-~~g~~v~l~v~R~g~~ 357 (1109)
..|++| ..|.+||||++ ||++||+|++|||+++.+ +.++..++.. ..|+.++|+|.|+++.
T Consensus 30 ~~gi~V-~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~~~ 94 (391)
T 3tsz_A 30 DVGIFV-AGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDV 94 (391)
T ss_dssp TTEEEE-EEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHH
T ss_pred CCCEEE-EEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCCcc
Confidence 366666 79999999999 999999999999999976 7888888865 7899999999998764
No 478
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...
Probab=97.80 E-value=9.8e-05 Score=79.42 Aligned_cols=169 Identities=11% Similarity=0.092 Sum_probs=93.8
Q ss_pred ccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC---------CeEEEEEEEEEcCC-------CcEEEEEEcCCC-c
Q 001276 67 ASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV-------HDFGFFRYDPSA-I 129 (1109)
Q Consensus 67 ~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~---------~~~~~a~vv~~d~~-------~DlAlLk~~~~~-~ 129 (1109)
...++|.+|++ .+|||+||++.. ...+.|.+.. ...+.++-+..+|. +|||||+++..- +
T Consensus 24 ~~~CgGtLIs~--~~VLTAAhC~~~-~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~ 100 (241)
T 2jkh_A 24 EGFCGGTILSE--FYILTAAHCLYQ-AKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITF 100 (241)
T ss_dssp CEEEEEEECSS--SEEEECGGGGGS-CSSCEEEESCSBTTCCCSCCEEECEEEEEECTTCBTTTTBTCCEEEEESSCCCC
T ss_pred CcEEEEEEeeC--CEEEEcHHHcCC-CCcEEEEECCccCCCCCCCcEEEEeEEEEeCCCCCCCCCCCcEEEEEECCcccC
Confidence 46799999996 499999999974 3345555542 23566666666664 699999997542 1
Q ss_pred ccccccCCCCCCcc-----CCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCCCCCCccccceeeEEE----
Q 001276 130 QFLNYDEIPLAPEA-----ACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHYKKDGYNDFNTFYMQA---- 193 (1109)
Q Consensus 130 ~~~~l~~l~l~~~~-----~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~--~~~~~~~~~~~~~~~~iq~---- 193 (1109)
. ..+.++.|.... +..|+...+.|+..... .......+.-+... ...+.. ...+ .++=+
T Consensus 101 ~-~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-~~~~---~~~Ca~~~~ 175 (241)
T 2jkh_A 101 R-MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSF-IITQ---NMFCAGYDT 175 (241)
T ss_dssp B-TTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHHHHHCSS-CCCT---TEEEESCSS
T ss_pred C-CCEeeeEcCCCCcccccccCCCeEEEEecCCCCCCCCcCccccEeeeccccHHHhcccccC-cCCC---CeEEeeCCC
Confidence 1 123444454322 46789999999753211 11222222222210 000100 0111 11211
Q ss_pred -eeccCCCCCCCceecC-CC--cEEEEeccccCC---CCCccccchHHHHHHHHHHH
Q 001276 194 -ASGTKGGSSGSPVIDW-QG--RAVALNAGSKSS---SASAFFLPLERVVRALRFLQ 243 (1109)
Q Consensus 194 -~a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~~---~~~~falP~~~i~~~l~~l~ 243 (1109)
....-.|.|||||+-. +| .++||.+.+..- ...+.+.-+...+..+++..
T Consensus 176 ~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~ 232 (241)
T 2jkh_A 176 KQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232 (241)
T ss_dssp SSCBCCTTTTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHT
T ss_pred CCCccCcCcCCCeeEEEECCEEEEEEEEEECCCCCCCCCceEEEEhHHHHHHHHHHh
Confidence 1234579999999853 45 599999876532 12344455555555555443
No 479
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.80 E-value=1.4e-05 Score=74.14 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=47.3
Q ss_pred EEEEecCCCcccc-C-CCCCCEEEEECCEEeCC--hhHHHHHHhcC----CCCeEEEEEEECCE
Q 001276 301 VVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQ--FLKLETLLDDG----VDKNIELLIERGGI 356 (1109)
Q Consensus 301 Vv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~--~~~l~~~l~~~----~g~~v~l~v~R~g~ 356 (1109)
+|..|.+++||++ | |++||+|++|||+++.+ +.++..+|... .++.++++|.|.++
T Consensus 35 ~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~~ 98 (103)
T 1ufx_A 35 RIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNS 98 (103)
T ss_dssp EEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCCC
T ss_pred EEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEEEccc
Confidence 4479999999999 9 99999999999999976 78888777543 57789998888654
No 480
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=97.79 E-value=0.00011 Score=82.45 Aligned_cols=100 Identities=10% Similarity=0.018 Sum_probs=66.5
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEec------CCeEEEEEEEEEcCC---
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV------NREEIPVYPIYRDPV--- 116 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~------~~~~~~a~vv~~d~~--- 116 (1109)
-|-+|.|... .....++|.+|+++ +|||+||++.. ...+.|.+. +...+.++-+..+|.
T Consensus 105 ~Pw~v~l~~~---------~~~~~CgGtLIs~~--~VLTAAHC~~~-~~~~~V~~G~~~~~~~~~~~~v~~i~~Hp~y~~ 172 (317)
T 3h5c_B 105 LPWQVKLTNS---------EGKDFCGGVIIREN--FVLTTAKCSLL-HRNITVKTYFNRTSQDPLMIKITHVHVHMRYDA 172 (317)
T ss_dssp CTTEEEEECS---------SSCEEEEEEEEETT--EEEECHHHHHS-CSSCEEEECTTSCTTSCEEEEEEEEEECTTCBT
T ss_pred CCcEEEEecc---------CCceeeeeEEeeCC--EEEEChHhcCc-CCceEEEEeeecCCCCcEEEEeeEEEECCCCCC
Confidence 5677888642 13467999999964 99999999863 344556553 235667776777764
Q ss_pred ----CcEEEEEEcCCCcccccccCCCCCCc-----cCCCCCEEEEEecCC
Q 001276 117 ----HDFGFFRYDPSAIQFLNYDEIPLAPE-----AACVGLEIRVVGNDS 157 (1109)
Q Consensus 117 ----~DlAlLk~~~~~~~~~~l~~l~l~~~-----~~~~G~~V~~iG~p~ 157 (1109)
+||||||++..-.-...+.++.|... .+..|+.+++.|+..
T Consensus 173 ~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~ 222 (317)
T 3h5c_B 173 DAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR 222 (317)
T ss_dssp TTTBSCCEEEEESSCCCTTTSCCCCBCCCHHHHHHTTTTTSCEEEEBCCT
T ss_pred CCCCCCeEEEEeCCcccCCCCccceeCCCcccccccccCCCeEEEEecCC
Confidence 69999999853211112344444433 367899999999853
No 481
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.79 E-value=3.3e-05 Score=73.65 Aligned_cols=59 Identities=29% Similarity=0.528 Sum_probs=46.4
Q ss_pred CceEEEEEecCCCcccc---CCCCCCEEEEECCEEeCCh--hHHHHHHhcCC---CCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL---RLEPGDVLVRVNGEVITQF--LKLETLLDDGV---DKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~---gL~~GD~Il~VnG~~v~~~--~~l~~~l~~~~---g~~v~l~v~R~g~ 356 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++.++ .++..++.... +..+.|+|.|+..
T Consensus 41 ~~v~V-~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~ 107 (119)
T 2cs5_A 41 MPVIV-SRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAV 107 (119)
T ss_dssp EEEEE-EEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCC
T ss_pred CCeEE-EEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcccc
Confidence 45565 79999999988 8999999999999999874 55555554332 3589999999754
No 482
>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}
Probab=97.79 E-value=0.0011 Score=72.63 Aligned_cols=188 Identities=11% Similarity=0.078 Sum_probs=98.4
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC--CeEEEEEec---------CCeEEEEEEEEEc
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFV---------NREEIPVYPIYRD 114 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~--~~~~~v~~~---------~~~~~~a~vv~~d 114 (1109)
-|-+|.|.... ........+.|.+|+++ +|||+||++... .....+.+. ....+..+-+..+
T Consensus 35 ~Pw~v~l~~~~-----~~~~~~~~CgGsLIs~~--~VLTAAHCv~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~H 107 (276)
T 2vnt_A 35 QPWFAAIYRRH-----RGGSVTYVCGGSLMSPC--WVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILH 107 (276)
T ss_dssp STTEEEEEEEC-----SSSCEEEEEEEEEEETT--EEEECGGGTTTCCCGGGEEEEESCCBSSSCCTTCEEEEEEEEEEC
T ss_pred CCcEEEEEEec-----CCCcceeEEEEEEeeCC--EEEECcccccCCCCCccEEEEeeeeeccCCCCceEEEEEEEEEEc
Confidence 57888887642 11223457999999964 999999998643 223444432 2345666666666
Q ss_pred CC---------CcEEEEEEcCCCc---c-cccccCCCC--CCccCCCCCEEEEEecCCCCC------CeEEEEEEEEecC
Q 001276 115 PV---------HDFGFFRYDPSAI---Q-FLNYDEIPL--APEAACVGLEIRVVGNDSGEK------VSILAGTLARLDR 173 (1109)
Q Consensus 115 ~~---------~DlAlLk~~~~~~---~-~~~l~~l~l--~~~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~ 173 (1109)
|. .|+|+|+++.... . ...+.++.| ....+..|..+.+.|...... .......+.-+..
T Consensus 108 p~y~~~~~~~~~Diall~L~~~~~~~~~~~~~v~picL~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~l~~~~~~i~~~ 187 (276)
T 2vnt_A 108 KDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISH 187 (276)
T ss_dssp TTCEECSSCEESCCEEEEEECTTSCCCCCCSSCCCCBCCCSSCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECH
T ss_pred cccccccccccchhhhhhhhccccccccCcccccccccccccccccccceEEEEEeeccccCCCCcchhheeeeeeEecH
Confidence 54 5999999974321 1 111233333 345677899999988653321 1111111111111
Q ss_pred --CCCCCCCCCccccceeeEEEe-----eccCCCCCCCceec-CCC--cEEEEeccccCCCC---CccccchHHHHHHHH
Q 001276 174 --DAPHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVID-WQG--RAVALNAGSKSSSA---SAFFLPLERVVRALR 240 (1109)
Q Consensus 174 --~~~~~~~~~~~~~~~~~iq~~-----a~~~~G~SGgPv~n-~~G--~vVGi~~~~~~~~~---~~falP~~~i~~~l~ 240 (1109)
-...|..... .....+... ...-.|.|||||+- .+| .++||.+.+..-.. -+.+.-+...+..++
T Consensus 188 ~~C~~~~~~~~~--~~~~~~~~~~~~~~~~~C~GDSGGPLv~~~~~~~~lvGIvS~G~~C~~~~~P~vyt~V~~y~~WI~ 265 (276)
T 2vnt_A 188 RECQQPHYYGSE--VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIR 265 (276)
T ss_dssp HHHTSTTTTGGG--SCTTEEEEECTTSCCCCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHH
T ss_pred HHhhhhhccCcc--cCccceeeccCCCCCCCCCCCCCCeEEEeeCCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHH
Confidence 0011111000 011112221 12446999999983 344 49999987653211 133344444555554
Q ss_pred HH
Q 001276 241 FL 242 (1109)
Q Consensus 241 ~l 242 (1109)
+.
T Consensus 266 ~~ 267 (276)
T 2vnt_A 266 SH 267 (276)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 483
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*
Probab=97.79 E-value=0.00051 Score=73.54 Aligned_cols=90 Identities=12% Similarity=0.057 Sum_probs=57.9
Q ss_pred ccEEEEEEEeCCCcEEEeCccccCC---CCeEEEEEecC-------CeEEEEEEEEEcC--------CCcEEEEEEcCCC
Q 001276 67 ASYATGFVVDKRRGIILTNRHVVKP---GPVVAEAMFVN-------REEIPVYPIYRDP--------VHDFGFFRYDPSA 128 (1109)
Q Consensus 67 ~~~GSGfvV~~~~G~IlTn~HVv~~---~~~~~~v~~~~-------~~~~~a~vv~~d~--------~~DlAlLk~~~~~ 128 (1109)
...++|.+|++ .+|||+||++.. ....+.+.+.. ...+..+-+..+| .+||||||++..-
T Consensus 21 ~~~CgGtLI~~--~~VLTAAhC~~~~~~~~~~~~v~~g~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~v 98 (242)
T 3tvj_B 21 GTTAAGALLYD--NWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKV 98 (242)
T ss_dssp SEEEEEEEETT--TEEEECHHHHSTTTTCSSCCEEEESCSBTTCSCCEEEEEEEEEECTTCCTTSCSTTCCEEEEESSCC
T ss_pred CCcEEEEEecC--CEEEECHHHCCCCCCCcceEEEEeccccccCcccceeeEEEEEeCCCCCCCCCCcCcEEEEEECCcc
Confidence 45799999996 499999999953 23445555542 2445555556554 3699999998532
Q ss_pred cccccccCCCCCCc----cCCCCCEEEEEecCCC
Q 001276 129 IQFLNYDEIPLAPE----AACVGLEIRVVGNDSG 158 (1109)
Q Consensus 129 ~~~~~l~~l~l~~~----~~~~G~~V~~iG~p~g 158 (1109)
.-...+.++.|... .+..|+.+.+.|+...
T Consensus 99 ~~~~~v~picLp~~~~~~~~~~~~~~~~~GwG~~ 132 (242)
T 3tvj_B 99 VINSNITPICLPRKEAESFMRTDDIGTASGWGLT 132 (242)
T ss_dssp CCBTTBCCCBCCCTTGGGGSCTTCEEEEEESCCC
T ss_pred ccCCCEecCCcCCCcccccccCCCEEEEEEeCCC
Confidence 11112334444322 3688999999998643
No 484
>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0
Probab=97.78 E-value=0.00047 Score=72.24 Aligned_cols=174 Identities=10% Similarity=0.095 Sum_probs=104.9
Q ss_pred ccccEEEEEEEcCcccccCCcccceeeEEEEEEEeeCCceEEEEeCceecCCCCcEEEEeecCCeEEeEE----EEEeeC
Q 001276 625 IEPTLVMFEVHVPPSCMIDGVHSQHFFGTGVIIYHSQSMGLVVVDKNTVAISASDVMLSFAAFPIEIPGE----VVFLHP 700 (1109)
Q Consensus 625 ~~~SvV~V~~~~~~~~~~dg~~~~~~~GsG~VId~~~~~G~IlTn~~~V~~~~~di~V~~~d~~~~~~a~----vv~~dp 700 (1109)
+...++.++.... .....-.|+... .||+||+|........++|.... |.-.-.. -+.--+
T Consensus 14 ia~~iC~l~n~sd---------g~~~~l~gigyG-----~~iItn~HLf~rnng~L~I~s~h-G~f~v~nt~~lki~~i~ 78 (241)
T 3mmg_A 14 ISACVCLLENSSD---------GHSERLFGIGFG-----PYIIANQHLFRRNNGELTIKTMH-GEFAVANSTQLQMKPVE 78 (241)
T ss_dssp HHTTEEEEEEEET---------TEEEEEEEEEET-----TEEEECGGGGSSTTCEEEEEETT-EEEEEEEGGGSCEEECT
T ss_pred hhheEEEEEEEeC---------CCEEEEEEEeEC-----CEEEEChhhcccCCCeEEEEECC-ceEEccCCCceeeEEeC
Confidence 4456777755443 223445566655 49999988777666778888885 5432221 244556
Q ss_pred CCcEEEEEECCCCCCcccccceeceecCCCccCCCCCeEEEEeeCCCCcceeeeeeEeccccccccCCCCCCccccccee
Q 001276 701 VHNFALIAYDPSSLGVAGASVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNISSADCPRYRAMNME 780 (1109)
Q Consensus 701 ~~dlAilk~d~~~l~~~~~~~v~~~~l~~~~~l~~G~~V~~iG~p~~~~~~~~~~~vt~i~~~~~i~~~~~~~y~~~~~~ 780 (1109)
..|+.|||. |+++|+ --+-+.|. ..+.||+|..||.++..... .++||+. +.+.+.. +..
T Consensus 79 g~DiiiIrm-PkDfpP----f~~kl~FR---~P~~~E~V~lVg~~fq~k~~--~s~vSes--S~i~p~~--------~~~ 138 (241)
T 3mmg_A 79 GRDIIVIKM-AKDFPP----FPQKLKFR---QPTIKDRVCMVSTNFQQKSV--SSLVSES--SHIVHKE--------DTS 138 (241)
T ss_dssp BSSCEEEEC-CTTSCC----CCSCCCBC---CCCTTCCEEEEEEEECSSCE--EEEEEEE--ECCEECT--------TSS
T ss_pred CccEEEEeC-CCCCCC----cchhcccC---CCCCCCeEEEEEeecccCCc--cEEECCc--ceeEEcC--------CCC
Confidence 789999998 667764 11112342 25899999999987655321 2234421 1111111 112
Q ss_pred EEE--EecccCCCCCceEEcC-CeeEEEEEeeccccccccCCCCCCceeEecccHHHHHHHHHHH
Q 001276 781 VIE--LDTDFGSTFSGVLTDE-HGRVQAIWGSFSTQVKFGCSSSEDHQFVRGIPIYTISRVLDKI 842 (1109)
Q Consensus 781 ~I~--~d~~ig~~sGGpL~d~-~G~VvGi~~~~~~~~~~g~~~~~~~~~~~aipi~~i~~~l~~l 842 (1109)
+.. +++.-|. ||+||++. ||.+|||...... ....+|+-++|-+....+|+..
T Consensus 139 fWkHwIsT~~G~-CGlPlVs~~Dg~IVGiHsl~~~--------~~~~N~F~~f~~~f~~~~L~~~ 194 (241)
T 3mmg_A 139 FWQHWITTKDGQ-AGSPLVSIIDGNILGIHSLTHT--------TNGSNYFVEFPEKFVATYLDAA 194 (241)
T ss_dssp EEEECBCCCTTC-TTCEEEETTTCCEEEEEEEEET--------TTCCEEEEECCTTHHHHHTTCS
T ss_pred EEEEEcCCCCCc-CCCeEEEcCCCcEEEEEecccC--------CCCcEEEEcCCHHHHHHHhhCc
Confidence 233 3333355 99999998 7999999876543 2346777777777666665544
No 485
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}
Probab=97.76 E-value=0.00065 Score=74.63 Aligned_cols=165 Identities=16% Similarity=0.186 Sum_probs=90.2
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC-----CeEEEEEecC------------------
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG-----PVVAEAMFVN------------------ 102 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~-----~~~~~v~~~~------------------ 102 (1109)
-|-+|.|.... ........++|.+|++ .+|||+||++... .....|.+..
T Consensus 34 ~Pw~v~l~~~~-----~~~~~~~~CgGsLIs~--~~VLTAAHC~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~~~ 106 (278)
T 2olg_A 34 FPWTAMIGYKN-----SSNFEQFACGGSLINN--RYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVP 106 (278)
T ss_dssp STTEEEEEEEC-----TTCCEEEEEEEEECSS--SEEEECGGGTSTHHHHHTCEEEEEEESCSBTTCSSCEETTTTEECS
T ss_pred CCceEEEEEec-----CCCCcceeEEEEEEeC--CEEEEhHHhCCCcccccccceeEEEeCcccCCCCccccccccccCC
Confidence 46688887542 1111246799999996 4999999999742 1234555431
Q ss_pred --CeEEEEEEEEEcC---------CCcEEEEEEcCCC-cccccccCCCCC--CccCCCCCEEEEEecCCCCC----CeEE
Q 001276 103 --REEIPVYPIYRDP---------VHDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK----VSIL 164 (1109)
Q Consensus 103 --~~~~~a~vv~~d~---------~~DlAlLk~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~----~si~ 164 (1109)
...+..+-+..+| .+||||||++..- +. -.+.++.|. ...+..|+.+.+.|+..... ....
T Consensus 107 ~~~~~~~v~~i~~Hp~y~~~~~~~~nDIALl~L~~~v~~~-~~v~picLp~~~~~~~~g~~~~v~GWG~t~~~~~~~~l~ 185 (278)
T 2olg_A 107 DKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFT-NYIRPVCLPQPNEEVQVGQRLTVVGWGRTETGQYSTIKQ 185 (278)
T ss_dssp SCCEEECEEEEEECTTCCTTCSSCTTCCEEEEESSCCCCC-SSCCCCBCCCTTCCCCTTCEEEEEESCCSSSCCCCSBCE
T ss_pred CCceEEeeEEEEECCCCcCCCCCCCCeEEEEEECCCCcCC-CCcCccCcCCCCCCcCCCCEEEEEcCCcCCCCCccchhh
Confidence 2344555555554 3699999997542 11 123333333 33567899999999864321 1112
Q ss_pred EEEEEEecCC--CCCCCCC--CccccceeeEEEe----eccCCCCCCCceecC--CC--cEEEEecccc
Q 001276 165 AGTLARLDRD--APHYKKD--GYNDFNTFYMQAA----SGTKGGSSGSPVIDW--QG--RAVALNAGSK 221 (1109)
Q Consensus 165 ~G~vs~~~~~--~~~~~~~--~~~~~~~~~iq~~----a~~~~G~SGgPv~n~--~G--~vVGi~~~~~ 221 (1109)
.-.+.-+... ...|... ...+ ..|=+. ...-.|.|||||+-. +| .++||++.+.
T Consensus 186 ~~~~~i~~~~~C~~~~~~~~~~~~~---~~~Ca~~~~~~~~C~GDSGGPL~~~~~~~~~~l~GIvS~g~ 251 (278)
T 2olg_A 186 KLAVPVVHAEQCAKTFGAAGVRVRS---SQLCAGGEKAKDSCGGDSGGPLLAERANQQFFLEGLVSFGA 251 (278)
T ss_dssp EEEEEBCCGGGGGGGGSSTTCCCCT---TEEEECCTTCTTCCCCCTTCEEEEEEGGGEEEEEEEEEECC
T ss_pred cccccccCHHHHHHHhccccccCCC---ceEeeecCCCCeeCCCccCcceEEEcCCCcEEEEEEEEECC
Confidence 2122222110 0111110 0111 122221 234579999999843 44 5999998764
No 486
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=97.74 E-value=6.7e-05 Score=67.08 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=44.8
Q ss_pred CeEEEE--cCCChhHH-cCCCCCCEEEEcCCeec--CCHHHHHHHHHhcCCCCeEeEEEEe
Q 001276 399 GLVYVA--EPGYMLFR-AGVPRHAIIKKFAGEEI--SRLEDLISVLSKLSRGARVPIEYSS 454 (1109)
Q Consensus 399 ~gv~v~--~pg~~a~~-aGl~~GD~I~~Vng~~v--~~l~~~~~~i~~~~~g~~v~l~~~~ 454 (1109)
.+++|. .++|||++ +||++||+|++|||+++ .+++++...++. .+..+.|++.+
T Consensus 28 ~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~~ 86 (87)
T 4e34_A 28 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ--QRGEIEFEVVY 86 (87)
T ss_dssp EEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHH--CCSEEEEEEEE
T ss_pred CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc--CCCeEEEEEEE
Confidence 367887 49999999 79999999999999999 456889999986 35577777765
No 487
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=97.73 E-value=6.1e-05 Score=70.73 Aligned_cols=60 Identities=25% Similarity=0.434 Sum_probs=47.5
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeCCh--hHHHHHHhc-CCCCeEEEEEEECCEEEE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQF--LKLETLLDD-GVDKNIELLIERGGISMT 359 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~~~--~~l~~~l~~-~~g~~v~l~v~R~g~~~~ 359 (1109)
.|.+| ..|.+ |+.. ||++||+|++|||+.+.+. .++..+|.. ..|+.+.|+|.|+|....
T Consensus 34 ~g~~V-~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~~~p 97 (113)
T 3soe_A 34 TGQKV-KMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSP 97 (113)
T ss_dssp TEEEE-EEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSCC--
T ss_pred CCcEE-EEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCccCc
Confidence 45555 68877 5666 9999999999999999954 578888865 468999999999986543
No 488
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=97.72 E-value=1.2e-05 Score=85.00 Aligned_cols=60 Identities=27% Similarity=0.415 Sum_probs=52.0
Q ss_pred CceEEEEEecCCCcccc-CCCCCCEEEEECCEEeC--ChhHHHHHHhcCCCCeE-EEEEEECCEEE
Q 001276 297 TGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT--QFLKLETLLDDGVDKNI-ELLIERGGISM 358 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-gL~~GD~Il~VnG~~v~--~~~~l~~~l~~~~g~~v-~l~v~R~g~~~ 358 (1109)
.|++| ..|.++|||++ ||++||+|++|||+.|. ++.++..++... |+.+ .|+|.|+|+..
T Consensus 33 ~gv~V-~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~-g~~v~~l~V~R~g~~~ 96 (216)
T 2krg_A 33 PGQFI-RSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLLVVDRETDEF 96 (216)
T ss_dssp CSCBE-EEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHH-CSEEEEEECCHHHHHH
T ss_pred CCeEE-EEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEEEEECCEEE
Confidence 47776 69999999999 99999999999999999 899999888655 7888 88888887643
No 489
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*
Probab=97.72 E-value=0.00066 Score=75.20 Aligned_cols=164 Identities=16% Similarity=0.124 Sum_probs=89.0
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC--CeEEEEEecC--------------CeEEEEEE
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFVN--------------REEIPVYP 110 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~--~~~~~v~~~~--------------~~~~~a~v 110 (1109)
|-+|.|..... . .......|.|.+|+++ +|||+||++... ...+.+.+.. ...+.++-
T Consensus 13 Pw~v~l~~~~~---~-~~~~~~~CgGsLIs~~--~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~V~~ 86 (290)
T 1fiw_A 13 PWMVSLQIFTY---H-NNRRYHVCGGSLLNSQ--WLLTAAHCFRIKKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYVEK 86 (290)
T ss_dssp TTEEEEEEEET---T-TTEEEEEEEEEEEETT--EEEECGGGGSSCCSGGGEEEEESCSBCCTTCCSCCCTTCEEEEEEE
T ss_pred CcEEEEEEecc---C-CCccceEEEEEEeeCC--EEEECHHhCCCCCCCcceEEEecceEEeccCCCcCCCCceEEEEEE
Confidence 56777765320 0 1112457999999964 999999999743 2335555431 23455555
Q ss_pred EEEcCC-------CcEEEEEEcCCC-cccccccCCCCCC---ccCCCCCEEEEEecCCCCC------CeEEEEEEEEecC
Q 001276 111 IYRDPV-------HDFGFFRYDPSA-IQFLNYDEIPLAP---EAACVGLEIRVVGNDSGEK------VSILAGTLARLDR 173 (1109)
Q Consensus 111 v~~d~~-------~DlAlLk~~~~~-~~~~~l~~l~l~~---~~~~~G~~V~~iG~p~g~~------~si~~G~vs~~~~ 173 (1109)
+..+|. +||||||++..- +. ..+.++.|.. .....|+.+.+.|+..... .......+.-+..
T Consensus 87 i~~Hp~y~~~~~~nDIALl~L~~~v~~~-~~v~PicLp~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~ 165 (290)
T 1fiw_A 87 IIIHEKYSASSEANDIALMKITPPVTCG-HFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDL 165 (290)
T ss_dssp EEECTTCBTTTTBTCCEEEEEESCCCCB-TTBCCCBCCCTTCCSCCSSCEEEEEESCCSSTTCSSCCSBCEEEEEEEECH
T ss_pred EEECCCCCCCCCCCCEEEEEECCccccC-CccccccCCCccccCcCCCCeEEEEEeccCCCCCCCCCceeeEEEEEEecH
Confidence 666654 699999997532 11 1223333332 2345699999999863211 1122223332221
Q ss_pred ---C-CCCCCCCCccccceeeEEEe-----eccCCCCCCCceecC---CC--cEEEEecccc
Q 001276 174 ---D-APHYKKDGYNDFNTFYMQAA-----SGTKGGSSGSPVIDW---QG--RAVALNAGSK 221 (1109)
Q Consensus 174 ---~-~~~~~~~~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~---~G--~vVGi~~~~~ 221 (1109)
. ...|.. ...+ ..|=+. ...-.|.|||||+-. +| .++||++.+.
T Consensus 166 ~~C~~~~~~~~-~i~~---~~iCag~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~ 223 (290)
T 1fiw_A 166 GLCNSTRWYNG-RIRS---TNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGV 223 (290)
T ss_dssp HHHTSTTTTTT-CCCT---TEEEEECTTCSSBCCTTCTTCEEEEECSSSSCEEEEEEEEECS
T ss_pred HHhccccccCC-cCCC---CEEEEecCCCCCeeCCCCCchheEEEECCCCCEEEEEEEEECC
Confidence 1 111111 1111 112221 234569999999843 33 5999998764
No 490
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...
Probab=97.72 E-value=0.00041 Score=75.11 Aligned_cols=185 Identities=14% Similarity=0.157 Sum_probs=101.6
Q ss_pred CceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCCC--eEEEEEecC---------CeEEEEEEEEEcC
Q 001276 47 PAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGP--VVAEAMFVN---------REEIPVYPIYRDP 115 (1109)
Q Consensus 47 ~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~~--~~~~v~~~~---------~~~~~a~vv~~d~ 115 (1109)
|-+|.|... ....++|.+|++ .+|||+||++.... ..+.+.+.. ...+.++-+..+|
T Consensus 13 Pw~v~l~~~----------~~~~CgGtLIs~--~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp 80 (254)
T 2bz6_H 13 PWQVLLLVN----------GAQLCGGTLINT--IWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPS 80 (254)
T ss_dssp TTEEEEEET----------TEEEEEEEECSS--SEEEECGGGGTTCSCGGGEEEEESCCBTTCCCSCCEEEEEEEEEEET
T ss_pred CCEEEEEeC----------CCcEEEEEEecC--CEEEECHHHcCCCCCcceEEEEECCcccCCCCCCcEEEEEEEEEECC
Confidence 567777631 246799999996 49999999997432 235665542 3456666666665
Q ss_pred C-------CcEEEEEEcCCCcccccccCCCCCCc-----cCCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CC
Q 001276 116 V-------HDFGFFRYDPSAIQFLNYDEIPLAPE-----AACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--AP 176 (1109)
Q Consensus 116 ~-------~DlAlLk~~~~~~~~~~l~~l~l~~~-----~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~--~~ 176 (1109)
. +||||||++..-.-...+.++.|... .+..|+.+.+.|+..... .......+..+... ..
T Consensus 81 ~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~ 160 (254)
T 2bz6_H 81 TYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQ 160 (254)
T ss_dssp TCCTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHHHH
T ss_pred CCCCCCCcCcEEEEEECCccccCCCccceECCCCccccccccCCCcEEEEeCcccCCCCCCChhheeeeeeeecHHHHhh
Confidence 4 69999999854211112344444332 245789999999753211 12222222222110 00
Q ss_pred CCCC----CCccccceeeEEEe-----eccCCCCCCCceecC-CC--cEEEEeccccCC---CCCccccchHHHHHHHHH
Q 001276 177 HYKK----DGYNDFNTFYMQAA-----SGTKGGSSGSPVIDW-QG--RAVALNAGSKSS---SASAFFLPLERVVRALRF 241 (1109)
Q Consensus 177 ~~~~----~~~~~~~~~~iq~~-----a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~~---~~~~falP~~~i~~~l~~ 241 (1109)
.+.. ....+ .+|=+. ...-.|.|||||+-. +| .++||.+.+..- ...+.+.-+...+..+++
T Consensus 161 ~~~~~~~~~~~~~---~~~Ca~~~~~~~~~C~GDSGgPl~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~ 237 (254)
T 2bz6_H 161 QSRKVGDSPNITE---YMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQK 237 (254)
T ss_dssp HSCCCTTCCCCCT---TEEEESCSSSSCBCCGGGTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHH
T ss_pred hhhccccCCccCC---CEEeecCCCCCCccccccCCCceEEeECCEEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHH
Confidence 0100 01111 112221 234568999999853 45 599999876532 123444556666666665
Q ss_pred HHhcC
Q 001276 242 LQERR 246 (1109)
Q Consensus 242 l~~~~ 246 (1109)
..+..
T Consensus 238 ~~~~~ 242 (254)
T 2bz6_H 238 LMRSE 242 (254)
T ss_dssp HHTSC
T ss_pred HHhcc
Confidence 55444
No 491
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Probab=97.71 E-value=0.00063 Score=73.62 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=60.8
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCC-------CCeEEEEEecC----------CeEEEE
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKP-------GPVVAEAMFVN----------REEIPV 108 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~-------~~~~~~v~~~~----------~~~~~a 108 (1109)
-|-+|.|... ......++|.+|++ .+|||+||++.. ....+.+.+.. ......
T Consensus 12 ~Pw~v~l~~~--------~~~~~~CgGtLI~~--~~VLTAAHC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~v 81 (259)
T 3rm2_H 12 SPWQVMLFRK--------SPQELLCGASLISD--RWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISML 81 (259)
T ss_dssp STTEEEEEEE--------TTEEEEEEEEECSS--SEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEEE
T ss_pred cCCEEEEEEC--------CCCceEEEEEEEeC--CEEEEcHHhCcccccccccCcccEEEEECcccccccccCcceeeEE
Confidence 3567777542 11245799999986 499999999841 12345555532 122334
Q ss_pred EEEEEcCC--------CcEEEEEEcCCC-cccccccCCCCCCc-----cCCCCCEEEEEecCC
Q 001276 109 YPIYRDPV--------HDFGFFRYDPSA-IQFLNYDEIPLAPE-----AACVGLEIRVVGNDS 157 (1109)
Q Consensus 109 ~vv~~d~~--------~DlAlLk~~~~~-~~~~~l~~l~l~~~-----~~~~G~~V~~iG~p~ 157 (1109)
+-+..+|. +||||||++..- +. ..+.++.|... .+..|..+.+.|+..
T Consensus 82 ~~i~~hp~y~~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~g~~~~v~GwG~ 143 (259)
T 3rm2_H 82 EKIYIHPRYNWRENLDRDIALMKLKKPVAFS-DYIHPVCLPDRETAASLLQAGYKGRVTGWGN 143 (259)
T ss_dssp EEEEECTTCBTTTTCBTCCEEEEESSCCCCB-TTBCCCBCCCHHHHHHHCCTTCEEEEEESCC
T ss_pred EEEEECCCCCCCCCCCCcEEEEEeCCceEcC-CCcccccCCCccccccccCCCCEEEEeecCC
Confidence 54555543 599999998532 11 12334444332 246799999999864
No 492
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.71 E-value=1.7e-05 Score=74.83 Aligned_cols=58 Identities=24% Similarity=0.449 Sum_probs=47.3
Q ss_pred CceEEEEEecCCCcccc-C-CCCCCEEEEECCEEeCChh--HHHHHHhcCCCCeEEEEEEECCE
Q 001276 297 TGLLVVDSVVPGGPAHL-R-LEPGDVLVRVNGEVITQFL--KLETLLDDGVDKNIELLIERGGI 356 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~-g-L~~GD~Il~VnG~~v~~~~--~l~~~l~~~~g~~v~l~v~R~g~ 356 (1109)
.|++| ..|.++|||++ | |++||+|++|||+++.++. ++..++. ..++.+.|+|.|+++
T Consensus 39 ~gv~V-~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~r~~~ 100 (113)
T 1um7_A 39 EGIFV-SFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK-RAGQSVTIVAQYRPE 100 (113)
T ss_dssp CCCBC-CCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHH-SCCSEEEEEEECCHH
T ss_pred CCEEE-EEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCcEEEEEEECcc
Confidence 56666 79999999999 9 9999999999999999984 3333333 568899999998754
No 493
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Probab=97.68 E-value=0.00021 Score=76.97 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=65.0
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCC---CCeEEEEEecC------CeEEEEEEEEEcCC
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKP---GPVVAEAMFVN------REEIPVYPIYRDPV 116 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~---~~~~~~v~~~~------~~~~~a~vv~~d~~ 116 (1109)
-|-+|.|.... ......++|.+|+++ +|||+||++.. ....+.+.+.. .+.+.++-+..+|.
T Consensus 12 ~Pw~v~l~~~~-------~~~~~~CgGtLIs~~--~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~~~~~~v~~i~~Hp~ 82 (245)
T 2f9n_A 12 WPWQVSLRVRD-------RYWMHFCGGSLIHPQ--WVLTAAHCVGPDVKDLATLRVQLREQHLYYQDQLLPVSRIIVHPQ 82 (245)
T ss_dssp CTTEEEEEEES-------SSEEEEEEEEEEETT--EEEECGGGGCSSCCCGGGEEEECSCSBTTTTCCCBCEEEEEECTT
T ss_pred CCcEEEEEEcC-------CCcceEEEEEEeeCC--EEEECHHhCCCCCCCcceEEEEeCCcccccCceEEEEEEEEECCC
Confidence 35678886531 112457999999964 99999999953 23345665542 23455666666664
Q ss_pred -------CcEEEEEEcCCC-cccccccCCCCC--CccCCCCCEEEEEecCC
Q 001276 117 -------HDFGFFRYDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDS 157 (1109)
Q Consensus 117 -------~DlAlLk~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~ 157 (1109)
+||||||++..- +. ..+.++.|. ...+..|+.+++.|+..
T Consensus 83 y~~~~~~~DIALl~L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~ 132 (245)
T 2f9n_A 83 FYIIQTGADIALLELEEPVNIS-SRVHTVMLPPASETFPPGMPCWVTGWGD 132 (245)
T ss_dssp CCSSCCTTCCEEEEESSCCCCC-SSSCCCBCCCTTCCCCTTCCEEEEESCC
T ss_pred ccCCCCCCcEEEEEeCCCCcCC-CCccccCCCCcccCCCCCCEEEEEEeCC
Confidence 699999998532 11 123333333 34567899999999863
No 494
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2
Probab=97.68 E-value=0.00019 Score=77.08 Aligned_cols=168 Identities=17% Similarity=0.150 Sum_probs=88.0
Q ss_pred cEEEEEEEeCCCcEEEeCccccCCC------CeEEEEEecCC--------eEEEEEEEEEcCC----------CcEEEEE
Q 001276 68 SYATGFVVDKRRGIILTNRHVVKPG------PVVAEAMFVNR--------EEIPVYPIYRDPV----------HDFGFFR 123 (1109)
Q Consensus 68 ~~GSGfvV~~~~G~IlTn~HVv~~~------~~~~~v~~~~~--------~~~~a~vv~~d~~----------~DlAlLk 123 (1109)
..++|.+|++ .+|||+||++... ...+.|.+... ..+.++-+..+|. +||||||
T Consensus 22 ~~CgGtLIs~--~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~ 99 (242)
T 2qy0_B 22 GRGGGALLGD--RWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLE 99 (242)
T ss_dssp SEEEEEEETT--TEEEECHHHHSCSSCCC----CCEEEESCSBHHHHHHHCCCCEEEEEECTTCCTTCSSCCTTCCEEEE
T ss_pred CCEEEEEEeC--CEEEEcHHhccccccccCCCceEEEEEeeccccccccccceeEEEEEECCCCccCcCCCCCCcEEEEE
Confidence 4689999996 4999999999632 23345555422 2344555555553 4999999
Q ss_pred EcCCC-cccccccCCCCCC--ccCCCCCEEEEEecCCCCC---CeEEEEEEEEecCC--CCCCC----CCCccccceeeE
Q 001276 124 YDPSA-IQFLNYDEIPLAP--EAACVGLEIRVVGNDSGEK---VSILAGTLARLDRD--APHYK----KDGYNDFNTFYM 191 (1109)
Q Consensus 124 ~~~~~-~~~~~l~~l~l~~--~~~~~G~~V~~iG~p~g~~---~si~~G~vs~~~~~--~~~~~----~~~~~~~~~~~i 191 (1109)
++..- +. ..+.++.|.. ..+..|..+++.|+..... .......+.-+... ...|. ...+.+ .+|
T Consensus 100 L~~~v~~~-~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~---~~~ 175 (242)
T 2qy0_B 100 LENSVTLG-PNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQ---NMF 175 (242)
T ss_dssp ESSCCCCB-TTBCCCBCCCSGGGGCTTCEEEEEECCCCSSSCCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCT---TEE
T ss_pred ECCCCcCC-CCcceeecCCCccccCCCCeEEEEeeccCCCcCCccceEEEEEEeCHHHHHHHhccccccccCCC---CEE
Confidence 98542 11 1233444433 3357899999999864322 11222222221110 00000 000111 112
Q ss_pred EE-----eeccCCCCCCCceecCC---C--cEEEEeccccCCC-CCccccchHHHHHHHHH
Q 001276 192 QA-----ASGTKGGSSGSPVIDWQ---G--RAVALNAGSKSSS-ASAFFLPLERVVRALRF 241 (1109)
Q Consensus 192 q~-----~a~~~~G~SGgPv~n~~---G--~vVGi~~~~~~~~-~~~falP~~~i~~~l~~ 241 (1109)
=+ ....-.|.|||||+-.+ | .++||.+.+..-. +.+.+.-+...+..+++
T Consensus 176 Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~~~l~Gi~S~g~~C~~~~~vyt~V~~y~~WI~~ 236 (242)
T 2qy0_B 176 CAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGYGFYTKVLNYVDWIKK 236 (242)
T ss_dssp EESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSSSCEEEEEGGGGHHHHHH
T ss_pred eccCCCCCCccccCCCCCcEEEEECCCCeEEEEEEEEECCCcCCCCcEEEEHHHHHHHHHH
Confidence 22 12355799999998532 2 4999998765321 23444445444554443
No 495
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Probab=97.68 E-value=0.00019 Score=76.78 Aligned_cols=167 Identities=17% Similarity=0.163 Sum_probs=88.7
Q ss_pred ccEEEEEEEeCCCcEEEeCccccCCCCeEEEEEecC---------CeEEEEEEEEEcCC---------CcEEEEEEcCCC
Q 001276 67 ASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVN---------REEIPVYPIYRDPV---------HDFGFFRYDPSA 128 (1109)
Q Consensus 67 ~~~GSGfvV~~~~G~IlTn~HVv~~~~~~~~v~~~~---------~~~~~a~vv~~d~~---------~DlAlLk~~~~~ 128 (1109)
...++|.+|+++ +|||+||++... ..+.+.+.. ...+...-+..+|. +||||||++..-
T Consensus 23 ~~~CgGtLIs~~--~VLTAAhC~~~~-~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~~ 99 (235)
T 2wph_S 23 DAFCGGSIVNEK--WIVTAAHCVETG-VKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPL 99 (235)
T ss_dssp TTCEEEEEEETT--EEEECGGGCCTT-SCCEEEESCCBTTSCCSCCEEEEEEEEEECTTTTSSSSCCTTCCEEEEESSCC
T ss_pred CeeEEEEEEeCC--EEEECHHHCcCC-CCEEEEEcccccCCCCCCcEEeeeEEEEeCCCCcccCCcCCCCEEEEEECCcC
Confidence 467999999964 999999999843 345555532 23455555555543 599999998542
Q ss_pred cccccccCCCCCCcc----CCCCCEEEEEecCCCCC-----CeEEEEEEEEecCC--CCCCCCCCccccceeeEEEe---
Q 001276 129 IQFLNYDEIPLAPEA----ACVGLEIRVVGNDSGEK-----VSILAGTLARLDRD--APHYKKDGYNDFNTFYMQAA--- 194 (1109)
Q Consensus 129 ~~~~~l~~l~l~~~~----~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~~--~~~~~~~~~~~~~~~~iq~~--- 194 (1109)
.....+.++.|.... +..+...++.|+..... .......+.-+... ...+.. ...+ ..|=+.
T Consensus 100 ~~~~~v~picL~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-~~~~---~~~Ca~~~~ 175 (235)
T 2wph_S 100 VLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKF-TITN---NMFCAGFHE 175 (235)
T ss_dssp CCBTTBCCCBCCCHHHHHHHHHTCEEEEEESSBSSTTSCBCSBCEEEEEEEECHHHHHHTCSS-CCCT---TEEEESCTT
T ss_pred cCCCCccccCCCCCcccccccCCccEEEEeCCCccCCCCccchheEeeeeeeCHHHhcCcccC-CCCC---CEEEeCCCC
Confidence 111123444444332 24588899998753211 11222222222110 001110 1111 112221
Q ss_pred --eccCCCCCCCceec-CCC--cEEEEeccccCCC---CCccccchHHHHHHHH
Q 001276 195 --SGTKGGSSGSPVID-WQG--RAVALNAGSKSSS---ASAFFLPLERVVRALR 240 (1109)
Q Consensus 195 --a~~~~G~SGgPv~n-~~G--~vVGi~~~~~~~~---~~~falP~~~i~~~l~ 240 (1109)
...-.|.|||||+- .+| .++||.+.+..-. ..+.+..+...+..++
T Consensus 176 ~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~ 229 (235)
T 2wph_S 176 GGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIK 229 (235)
T ss_dssp CSCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHH
T ss_pred CCCccCCCCCCCceEEeECCeEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHH
Confidence 23457999999984 345 5999998765321 2233444444444443
No 496
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=97.67 E-value=7.7e-05 Score=69.14 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=46.2
Q ss_pred CceEEEEEecCCCcccc--CCCCCCEEEEECCEEeCC--hhHHHHHHhcCCCCeEEEEEEECCEE
Q 001276 297 TGLLVVDSVVPGGPAHL--RLEPGDVLVRVNGEVITQ--FLKLETLLDDGVDKNIELLIERGGIS 357 (1109)
Q Consensus 297 ~G~lVv~~V~~~spA~~--gL~~GD~Il~VnG~~v~~--~~~l~~~l~~~~g~~v~l~v~R~g~~ 357 (1109)
.|++| ..|.++|||++ ||++||+|++|||+++.+ +.++..++... ++.++|++.|....
T Consensus 35 ~~~~V-~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~~~ 97 (103)
T 2dc2_A 35 VPILI-SEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ-RGEIEFEVVYVALE 97 (103)
T ss_dssp EEEEE-EEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHC-CSEEEEEEEECC--
T ss_pred CCEEE-EEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEecCCc
Confidence 45555 79999999997 899999999999999966 66666666543 45899999886543
No 497
>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Probab=97.66 E-value=0.00099 Score=76.54 Aligned_cols=168 Identities=11% Similarity=0.085 Sum_probs=91.2
Q ss_pred ccEEEEEEEeCCCcEEEeCccccCC---CCeEEEEEec-------CCeEEEEEEEEEcCC-------------CcEEEEE
Q 001276 67 ASYATGFVVDKRRGIILTNRHVVKP---GPVVAEAMFV-------NREEIPVYPIYRDPV-------------HDFGFFR 123 (1109)
Q Consensus 67 ~~~GSGfvV~~~~G~IlTn~HVv~~---~~~~~~v~~~-------~~~~~~a~vv~~d~~-------------~DlAlLk 123 (1109)
...+.|.+|++ .+|||+||++.. ....+.|.+. .+..+.++-+..+|. +||||||
T Consensus 140 ~~~CgGsLIs~--~~VLTAAHCv~~~~~~~~~~~V~~G~~~~~~~~~~~~~V~~i~~Hp~y~~~~~~~~~~~~nDIALlk 217 (372)
T 1z8g_A 140 AHLCGGSLLSG--DWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVH 217 (372)
T ss_dssp EEEEEEEESSS--SEEEECGGGCCGGGCCGGGEEEEESCSBTTCTTSEEECEEEEEEETTCGGGTCTTCCCCTTCCEEEE
T ss_pred ceEEEEEEecC--CEEEEChhhcCCCCCccceEEEEEeeEeccCCCCcEEEEEEEEECCCccccccCCCCCCCccEEEEE
Confidence 46789999996 499999999942 2234555543 233556665666554 4999999
Q ss_pred EcCCC-cccccccCCCCC--CccCCCCCEEEEEecCCCCC-----CeEEEEEEEEecC---CC-CCCCCCCccccceeeE
Q 001276 124 YDPSA-IQFLNYDEIPLA--PEAACVGLEIRVVGNDSGEK-----VSILAGTLARLDR---DA-PHYKKDGYNDFNTFYM 191 (1109)
Q Consensus 124 ~~~~~-~~~~~l~~l~l~--~~~~~~G~~V~~iG~p~g~~-----~si~~G~vs~~~~---~~-~~~~~~~~~~~~~~~i 191 (1109)
++..- +. ..+.++.|. ...+..|+.+.+.|+..... .......+.-+.+ .. ..|+. ...+ .+|
T Consensus 218 L~~pv~~~-~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~~~~~~~L~~~~v~ii~~~~C~~~~~~~~-~i~~---~~i 292 (372)
T 1z8g_A 218 LSSPLPLT-EYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGN-QIKP---KMF 292 (372)
T ss_dssp ESSCCCCC-SSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECHHHHTSTTTTTT-CCCT---TEE
T ss_pred ECCCCCCC-CceeccccCCcccCCCCCCEEEEEecCCCCCCCCCCceeeEEEEEecChHHhCcchhcCC-cCCC---CeE
Confidence 97532 11 123333333 34567899999999763321 1122222222221 11 11211 1111 122
Q ss_pred EEe-----eccCCCCCCCceecCC-----C--cEEEEeccccCC---CCCccccchHHHHHHHHH
Q 001276 192 QAA-----SGTKGGSSGSPVIDWQ-----G--RAVALNAGSKSS---SASAFFLPLERVVRALRF 241 (1109)
Q Consensus 192 q~~-----a~~~~G~SGgPv~n~~-----G--~vVGi~~~~~~~---~~~~falP~~~i~~~l~~ 241 (1109)
=+. ...-.|.|||||+-.+ | .++||.+.+..- ..-+.+.-+...+..+++
T Consensus 293 Cag~~~~~~d~C~GDSGGPLv~~~~~~~~~~~~lvGIvS~G~~C~~~~~p~vyt~V~~y~~WI~~ 357 (372)
T 1z8g_A 293 CAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQ 357 (372)
T ss_dssp EESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEEEEEGGGGHHHHHH
T ss_pred eeecCCCCCcCCCCCCccceEeccCcCCCCCEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHH
Confidence 221 2345699999998433 3 699999876532 123344444444444443
No 498
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=97.65 E-value=0.00026 Score=64.05 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=51.3
Q ss_pred eEEEEc--CCChhHHcC-CCCCCEEEEcCCeecCCH--HHHHHHHHhcCCCCeEeEEEEeec
Q 001276 400 LVYVAE--PGYMLFRAG-VPRHAIIKKFAGEEISRL--EDLISVLSKLSRGARVPIEYSSYT 456 (1109)
Q Consensus 400 gv~v~~--pg~~a~~aG-l~~GD~I~~Vng~~v~~l--~~~~~~i~~~~~g~~v~l~~~~~~ 456 (1109)
.+||+. ++++|++.| |.+||.|++|||+++..+ ++.++.|+..+.|..++|++.+..
T Consensus 29 ~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p~ 90 (95)
T 3gge_A 29 YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPK 90 (95)
T ss_dssp CCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred cEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECcc
Confidence 467874 999999998 999999999999999776 899999999999999999988764
No 499
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=96.76 E-value=8.9e-06 Score=76.81 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=44.9
Q ss_pred cEEEEEecCCChhhh-cCCCCCCeEEEECCeeC--CCHHHHHHHHHhCCCCceEEEE
Q 001276 1009 GVYVARWCHGSPVHR-YGLYALQWIVEINGKRT--PDLEAFVNVTKEIEHGEFVRVR 1062 (1109)
Q Consensus 1009 gV~V~~v~~gSPA~~-~GL~~gD~I~~VNg~~v--~~l~~f~~~l~~~~~~~~v~l~ 1062 (1109)
+++|..|.++|||++ +||++||.|++|||+++ .+++++.+.+++. +..++|+
T Consensus 54 gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~--~~~v~l~ 108 (112)
T 2lob_A 54 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ--RGEIEFE 108 (112)
Confidence 689999999999999 99999999999999999 5588888888763 3447666
No 500
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Probab=97.58 E-value=0.0015 Score=81.72 Aligned_cols=181 Identities=15% Similarity=0.233 Sum_probs=96.3
Q ss_pred CCceEEEEEEeeeccCCCCCCccEEEEEEEeCCCcEEEeCccccCCC--CeEEEEEecC---------CeEEEEEEEEEc
Q 001276 46 VPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPG--PVVAEAMFVN---------REEIPVYPIYRD 114 (1109)
Q Consensus 46 ~~sVV~I~~~~~~~~d~~~~~~~~GSGfvV~~~~G~IlTn~HVv~~~--~~~~~v~~~~---------~~~~~a~vv~~d 114 (1109)
-|-+|+|... .....++|.+|+++ +|||+||++... +..+.|.+.. ...+...-++.+
T Consensus 573 ~PW~VsL~~~---------~~~~~CGGSLIs~~--wVLTAAHCv~~~~~~~~~~V~lG~~~~~~~~~~~q~~~V~~i~~h 641 (791)
T 4dur_A 573 WPWQVSLRTR---------FGMHFCGGTLISPE--WVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLE 641 (791)
T ss_dssp STTEEEEECT---------TSCEEEEEEEEETT--EEEECGGGGSSCCCGGGCEEEESCCBSSSCCTTCEEEEEEEEEEC
T ss_pred CCeEEEEEec---------CCCeEEEEEEEeCC--EEEECHHHcCCcCCCceEEEEeccccccCCCCccEEEEEEEEECC
Confidence 3556777532 13567999999964 999999999742 2344555532 235556656666
Q ss_pred CC-CcEEEEEEcCCCcccccccCCCC--CCccCCCCCEEEEEecCCCCC----CeEEEEEEEEecC---CCCCCCCCCcc
Q 001276 115 PV-HDFGFFRYDPSAIQFLNYDEIPL--APEAACVGLEIRVVGNDSGEK----VSILAGTLARLDR---DAPHYKKDGYN 184 (1109)
Q Consensus 115 ~~-~DlAlLk~~~~~~~~~~l~~l~l--~~~~~~~G~~V~~iG~p~g~~----~si~~G~vs~~~~---~~~~~~~~~~~ 184 (1109)
+. +||||||++....-...+.++.| ....+..|..+.+.|+..... ..+....+.-+.. ....+......
T Consensus 642 p~~nDIALLkL~~pv~~s~~V~PIcLP~~~~~~~~g~~~~vsGWG~t~~~~~s~~L~~~~v~ii~~~~C~~~~~~~~~i~ 721 (791)
T 4dur_A 642 PTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQ 721 (791)
T ss_dssp TTCCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCC---CCTTBCEEEEEEEECHHHHTSTTTTTTCCC
T ss_pred CCCCceEEEEecCccccCCceeeeeccCcccccCCCCEEEEEEeCCCCCCCCCCeeEEEEEEEeCHHHhhcccccCCCCC
Confidence 65 79999999854211112233333 334567899999999864211 1112222222211 11111111111
Q ss_pred ccceeeEEEe-----eccCCCCCCCceecC-CC--cEEEEeccccCCC---CCccccchHHHHHHHH
Q 001276 185 DFNTFYMQAA-----SGTKGGSSGSPVIDW-QG--RAVALNAGSKSSS---ASAFFLPLERVVRALR 240 (1109)
Q Consensus 185 ~~~~~~iq~~-----a~~~~G~SGgPv~n~-~G--~vVGi~~~~~~~~---~~~falP~~~i~~~l~ 240 (1109)
+ .+|=+. ...-.|.|||||+-. +| .++||++.+..-. .-+.+.-+...+..++
T Consensus 722 ~---~~iCAg~~~gg~daC~GDSGGPLv~~~~~~~~LvGIvS~G~gC~~~~~PgVYTrVs~y~dWI~ 785 (791)
T 4dur_A 722 S---TELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 785 (791)
T ss_dssp T---TEEEESCSSSCCCBCCSCTTCEEEEEETTEEEEEEECCTTTCCBBTTBCEEEEEGGGTHHHHH
T ss_pred C---CeEEeccCCCCCCCCCCCcccceEEEeCCeEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHH
Confidence 1 112221 223468999999843 23 4999998765321 1234444444444443
Done!