BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001277
(1109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 106/165 (64%), Gaps = 4/165 (2%)
Query: 13 KYDAFLSFRGEDTRKSFTDHLYAALKNKGIYVFKDDKELEKGGSISPNLLEAIEESRISI 72
KYD FLSFRG DTR +F LY L + I FKDDKELE G SP L IE SR ++
Sbjct: 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 73 IVLSKNYASSTWCLDELVKIVECKKRDH-EIFPIFYDVEPTAVRKQTTSFGEAFAKHEEA 131
+V+S+NYA+S+WCLDELV I++ +K+ + PIFY VEP VR QT E F KH A
Sbjct: 68 VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKH--A 125
Query: 132 FKDNIEKLQKWRDALKVVANKSGWELKDSNESEFIDEIVNVISNK 176
+++ EK+ KWR AL A SG + ++S+ +D+I N ISNK
Sbjct: 126 SREDPEKVLKWRQALTNFAQLSG-DCSGDDDSKLVDKIANEISNK 169
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 140 bits (352), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 96/147 (65%), Gaps = 4/147 (2%)
Query: 13 KYDAFLSFRGEDTRKSFTDHLYAALKNKGIYVFKDDKELEKGGSISPNLLEAIEESRISI 72
+Y+ FLSFRG DTR+ FTD LY +L+ I+ F+DD EL KG I PNLL AI++S+I +
Sbjct: 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 73 IVLSKNYASSTWCLDELVKIVECKKRDHE--IFPIFYDVEPTAVRKQTTSFGEAFAKHEE 130
++S YA S WCL EL +IV ++ D I PIFY V+P+ VR QT + +AF KH
Sbjct: 95 PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 131 AFKDNIEKLQKWRDALKVVANKSGWEL 157
F + + +Q W+DALK V + GW +
Sbjct: 155 KF--DGQTIQNWKDALKKVGDLKGWHI 179
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 70.1 bits (170), Expect = 7e-12, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 96/236 (40%), Gaps = 39/236 (16%)
Query: 634 LKKFPESLGSMKDLMELFLDGTSIAEVPSSIEXXXXXXXXXXXXXXXXXXXPSCINGLRS 693
L +FP+ + L +D + E+P + + P+ I L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRAL-PASIASLNR 151
Query: 694 LKTLNLSGCSKLQNVPETLGQVES---------LEELDISGTAIRRPPSSIFVMNNLKTL 744
L+ L++ C +L +PE L ++ L+ L + T IR P+SI + NLK+L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 745 SFSGCNGPPSSTSWHWHFPFNLMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPN 804
R+ P++ + P++ L L +LDL C P
Sbjct: 212 KI-----------------------RNSPLSALGPAIHHLPKLEELDLRGCTALRN-YPP 247
Query: 805 DIGNLCSLKQLNLSQ-NNFVTLPASINSLFNLGQLDLEDCKRLQSMP----QLPSN 855
G LK+L L +N +TLP I+ L L +LDL C L +P QLP+N
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 11/149 (7%)
Query: 526 NTLVILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAG---------SMNDL 576
N L L+++ C LT LP ++ + G + L LE+ G ++ +L
Sbjct: 150 NRLRELSIRACPELTELPEPLASTD-ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNL 208
Query: 577 SELFLDRTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKK 636
L + + + L +I HL L L+L+ C L++ LK L L CS L
Sbjct: 209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268
Query: 637 FPESLGSMKDLMELFLDG-TSIAEVPSSI 664
P + + L +L L G +++ +PS I
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Score = 37.4 bits (85), Expect = 0.041, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 770 RSYPVALMLPSLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASI 829
RS P+ L L + GL E +P+ L+ L L++N LPASI
Sbjct: 89 RSVPLPQFPDQAFRLSHLQHXTIDAAGLXE--LPDTXQQFAGLETLTLARNPLRALPASI 146
Query: 830 NSLFNLGQLDLEDCKRLQSMPQ 851
SL L +L + C L +P+
Sbjct: 147 ASLNRLRELSIRACPELTELPE 168
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 13 KYDAFLSFRGEDTRKSFTDHLYAALKNKGIYVFKDDKELEKGGSISPNLLEAIEESRISI 72
++ AF+S+ G D+ + L L+ +G + ++ G SI N++ IE+S SI
Sbjct: 12 QFHAFISYSGHDSF-WVKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYKSI 70
Query: 73 IVLSKNYASSTWCLDEL 89
VLS N+ S WC EL
Sbjct: 71 FVLSPNFVQSEWCHYEL 87
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 116/314 (36%), Gaps = 43/314 (13%)
Query: 583 RTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLK------- 635
+ T++EL L TG + L +C L SL + L +L SKL+
Sbjct: 390 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 449
Query: 636 ----KFPESLGSMKDLMELFLDGTSI-AEVPSSIEXXXXXXXXXXXXXXXXXXXPSCING 690
+ P+ L +K L L LD + E+PS + P I
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 691 LRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRP-PSSIFVMNNLKTLSFSG- 748
L +L L LS S N+P LG SL LD++ P+++F + +F
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Query: 749 --------------CNGPPSSTSWHW-----------HFPFNLMGQRSYPVALMLPSLSG 783
C+G + + P N+ R Y P+
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT-SRVY-GGHTSPTFDN 627
Query: 784 LHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFV-TLPASINSLFNLGQLDLED 842
S+ LD+S L G IP +IG++ L LNL N+ ++P + L L LDL
Sbjct: 628 NGSMMFLDMSYNML-SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 686
Query: 843 CKRLQSMPQLPSNL 856
K +PQ S L
Sbjct: 687 NKLDGRIPQAMSAL 700
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 60/154 (38%), Gaps = 12/154 (7%)
Query: 583 RTTIEELPLSIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLK------- 635
+ T++EL L TG + L +C L SL + L +L SKL+
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Query: 636 ----KFPESLGSMKDLMELFLDGTSI-AEVPSSIEXXXXXXXXXXXXXXXXXXXPSCING 690
+ P+ L +K L L LD + E+PS + P I
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 691 LRSLKTLNLSGCSKLQNVPETLGQVESLEELDIS 724
L +L L LS S N+P LG SL LD++
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MASTSIQNAFHGKYDAFLSFRGEDTRKSFTDHLYAALKNKG-IYVFKDDKELEKGGSISP 59
M +T Q + ++ AF+S+ D+ + + K G I + + + G SIS
Sbjct: 23 MKTTQEQLKRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISE 82
Query: 60 NLLEAIEESRISIIVLSKNYASSTWCLDEL 89
N++ IE+S SI VLS N+ + WC E
Sbjct: 83 NIVSFIEKSYKSIFVLSPNFVQNEWCHYEF 112
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 690 GLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPS-SIFV-MNNLKTLSFS 747
G SLK L+LS + LG +E LE LD + +++ S+F+ + NL L S
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 748 GCNGPPSSTSWHWHFPFN--------LMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGE 799
+ T ++ FN M S+ + + L +L+ LDLS C L E
Sbjct: 430 H-----THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-E 483
Query: 800 GAIPNDIGNLCSLKQLNLSQNNFVTL 825
P +L SL+ LN+S NNF +L
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSL 509
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 25/155 (16%)
Query: 717 SLEELDISGTAIRRPPS-SIFVMNNLKTLSFSGC------NGPPSSTSWHWHFPFNLMGQ 769
S + LD+S +R S S F L+ L S C +G S S + +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-----LSTLIL 83
Query: 770 RSYPV-ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTL 825
P+ +L L + SGL SL KL + L ++ N IG+L +LK+LN++ N L
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 826 PASINSLFNLGQLDLED-------CKRLQSMPQLP 853
P ++L NL LDL C L+ + Q+P
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 690 GLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPS-SIFV-MNNLKTLSFS 747
G SLK L+LS + LG +E LE LD + +++ S+F+ + NL L S
Sbjct: 395 GTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 453
Query: 748 GCNGPPSSTSWHWHFPFN--------LMGQRSYPVALMLPSLSGLHSLSKLDLSDCGLGE 799
+ T ++ FN M S+ + + L +L+ LDLS C L E
Sbjct: 454 H-----THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-E 507
Query: 800 GAIPNDIGNLCSLKQLNLSQNNFVTL 825
P +L SL+ LN+S NNF +L
Sbjct: 508 QLSPTAFNSLSSLQVLNMSHNNFFSL 533
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 775 ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTLPASINS 831
+L L + SGL SL KL + L ++ N IG+L +LK+LN++ N LP ++
Sbjct: 114 SLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 171
Query: 832 LFNLGQLDLED-------CKRLQSMPQLP 853
L NL LDL C L+ + Q+P
Sbjct: 172 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 22/123 (17%)
Query: 413 KEPPNRIINILQISFDGLQDLEKKIFLDVACFFKSWDRDHVEKILEGCGFSPVIGIEVLI 472
+E PN + +Q+ DGLQD +K+F V C DHV++++ ++P +G+
Sbjct: 87 REQPNDLARYIQL--DGLQDRNEKLFYRVVC-------DHVKELMP-IVYTPTVGLACQN 136
Query: 473 EKSLLTVDDGNRLWMHDLLQELGHQIVQRQSPEQPGKRSRIWRDEEVRHMLTENTLVILN 532
+ G + ++D +QI+ W +E+VR ++ + IL
Sbjct: 137 FGYIYRKPKGLYITINDNSVSKIYQILSN------------WHEEDVRAIVVTDGERILG 184
Query: 533 LKD 535
L D
Sbjct: 185 LGD 187
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 812 LKQLNLSQNNFVTLPASINSLFNLGQLDLEDCKRLQSMPQLPSNLYEVQV--NGCASLVT 869
L++L++S N +LPA + L L + +L S+P LPS L E+ V N ASL T
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYN----NQLTSLPMLPSGLQELSVSDNQLASLPT 198
Query: 870 LSGAL-KL--CKSKCTSINCIGS----LKLAGNNGLAISMLREYLK 908
L L KL ++ TS+ + S L ++GN ++ +L LK
Sbjct: 199 LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELK 244
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 25/150 (16%)
Query: 690 GLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPS-SIFV-MNNLKTLSFS 747
G SLK L+LS + LG +E LE LD + +++ S+F+ + NL L S
Sbjct: 76 GTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134
Query: 748 GCNGPPSSTSWHWHFPFN--LMGQRSYPVALM---------LPSL-SGLHSLSKLDLSDC 795
H FN G S V M LP + + L +L+ LDLS C
Sbjct: 135 ---------HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 796 GLGEGAIPNDIGNLCSLKQLNLSQNNFVTL 825
L E P +L SL+ LN+S NNF +L
Sbjct: 186 QL-EQLSPTAFNSLSSLQVLNMSHNNFFSL 214
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 533 LKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKKCLEFAGSMNDLSELFLDRTTIEELPLS 592
L++CT+L TL +K++ L+ SGC LTK + + +F D + + L
Sbjct: 259 LQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVXDNSAIETLEPRVFXDCVKLSSVTLP 318
Query: 593 IQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLTLSGCSKLKKFP 638
L + + K+CK L ++S+ + + +++ G S + K+P
Sbjct: 319 -TALKTIQVYAFKNCKALSTISYP-KSITLIESGAFEG-SSITKYP 361
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 133/317 (41%), Gaps = 40/317 (12%)
Query: 129 EEAFKDNIEKLQKWRDALKVVANKSGWELKDSNESEFIDEIVNVISNKIRTKPEIL---K 185
E +KD LQ L +V++ SG + D + F+ ++ + +P I K
Sbjct: 77 HEGYKDLAALLQS---GLPLVSSSSGKD-TDGGITSFVRTVL--CEGGVPQRPVIFVTRK 130
Query: 186 ELV-GIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVA---YDLISHEFDGSTF 241
+LV I +L KL + + + I+GM G GK+ LA A + L+ F G
Sbjct: 131 KLVHAIQQKLWKL-------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVH 183
Query: 242 LANVREKSEKEGXXXXXXXXXXXXXXXXXXXXXWNVD-----DGINIIGSRLRQKKVLLV 296
++ K +K G ++ D + ++ R + + LL+
Sbjct: 184 WVSIG-KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLR-KHPRSLLI 241
Query: 297 IDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEV-LSNDEALQ 355
+DDV D L+ F +I++TTRDK + + +H+ +E L ++ L+
Sbjct: 242 LDDVWDPWVLKA-------FDNQCQILLTTRDKS-VTDSVMGPKHVVPVESGLGREKGLE 293
Query: 356 LFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGRSVDLWRSTLKRLKKEP 415
+ S+ ++ + + ++K G PL ++++G+ L + W L++L+ +
Sbjct: 294 ILSLFVNMKKEDLPAE---AHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQ 349
Query: 416 PNRIINILQISFDGLQD 432
RI ++ L +
Sbjct: 350 FKRIRKSSSYDYEALDE 366
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 775 ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTLPASINS 831
+L L + SGL SL KL + L ++ N IG+L +LK+LN++ N LP ++
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 832 LFNLGQLDLED-------CKRLQSMPQLP 853
L NL LDL C L+ + Q+P
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 775 ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTLPASINS 831
+L L + SGL SL KL + L ++ N IG+L +LK+LN++ N LP ++
Sbjct: 92 SLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 832 LFNLGQLDLED-------CKRLQSMPQLP 853
L NL LDL C L+ + Q+P
Sbjct: 150 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 178
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 775 ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTLPASINS 831
+L L + SGL SL KL + L ++ N IG+L +LK+LN++ N LP ++
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 832 LFNLGQLDLED-------CKRLQSMPQLP 853
L NL LDL C L+ + Q+P
Sbjct: 149 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 177
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 775 ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTLPASINS 831
+L L + SGL SL KL + L ++ N IG+L +LK+LN++ N LP ++
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 832 LFNLGQLDLED-------CKRLQSMPQLP 853
L NL LDL C L+ + Q+P
Sbjct: 149 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 177
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 775 ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTLPASINS 831
+L L + SGL SL KL + L ++ N IG+L +LK+LN++ N LP ++
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 832 LFNLGQLDLED-------CKRLQSMPQLP 853
L NL LDL C L+ + Q+P
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 775 ALMLPSLSGLHSLSKLDLSDCGLGEGAIPN-DIGNLCSLKQLNLSQN--NFVTLPASINS 831
+L L + SGL SL KL + L ++ N IG+L +LK+LN++ N LP ++
Sbjct: 92 SLALGAFSGLSSLQKLVALETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 832 LFNLGQLDLED-------CKRLQSMPQLP 853
L NL LDL C L+ + Q+P
Sbjct: 150 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 178
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 21/99 (21%)
Query: 778 LPSLSGLHSLSKLDLSD---CGLGE--------GAIPNDIGNLC----SLKQLNLSQNNF 822
LP L SL+ LD+S+ GL E A N+I +LC SL++LN+S N
Sbjct: 272 LPELP--QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 329
Query: 823 VTLPASINSLFNLGQLDLEDCKRLQSMPQLPSNLYEVQV 861
+ LPA L L + L +P+LP NL ++ V
Sbjct: 330 IELPALPPRLERL----IASFNHLAEVPELPQNLKQLHV 364
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 178 RTKPEILKELVGIDSRLEKLRFLI-ATESSDVRMMGIWGMGGLGKTTLARV 227
R +PE L + +G L + L A E+ + M +WG G GKTTLA V
Sbjct: 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEV 69
>pdb|1JJU|B Chain B, Structure Of A Quinohemoprotein Amine Dehydrogenase With A
Unique Redox Cofactor And Highly Unusual Crosslinking
pdb|1PBY|B Chain B, Structure Of The Phenylhydrazine Adduct Of The
Quinohemoprotein Amine Dehydrogenase From Paracoccus
Denitrificans At 1.7 A Resolution
Length = 337
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 835 LGQLDLEDCKRLQSMPQLPSNLYEVQVNGCASLVTLSGAL-KLCKSKCTSINCIGSLKLA 893
L DLE ++ +P LP + Y V V+ S V L GAL L ++ G + L
Sbjct: 262 LESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320
Query: 894 GNNGLAISMLREYLK 908
GN ++++ +R + +
Sbjct: 321 GNASMSLASVRLFTR 335
>pdb|1O77|A Chain A, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|B Chain B, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|C Chain C, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|D Chain D, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|E Chain E, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
Length = 146
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 14 YDAFLSFRGEDTRKSFTDHLYAALKNKGIYVFK---DDKELEKGGSISPNLLEAIEESRI 70
YDAF+S+ D + ++L FK ++ G I N++++IE+S
Sbjct: 3 YDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIPGKWIIDNIIDSIEKSHK 60
Query: 71 SIIVLSKNYASSTWCLDEL 89
++ VLS+N+ S W EL
Sbjct: 61 TVFVLSENFVKSEWSKYEL 79
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 35/172 (20%)
Query: 688 INGLRSLKTLNLSGCSKLQNVP-ETLGQVESLEELDISGTAIRRPPSSIFV--------- 737
NGL SL TL L ++L VP + + L EL + I PS F
Sbjct: 79 FNGLPSLNTLELFD-NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 738 -----------------MNNLKTLSFSGCN--GPPSSTSWHWHFPFNLMGQRSYPVALML 778
+ NL+ L+ CN P+ T+ L G R + L+
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNR---LDLIR 194
Query: 779 P-SLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLPASI 829
P S GL SL KL L + N +L SL++LNLS NN ++LP +
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIE-RNAFDDLKSLEELNLSHNNLMSLPHDL 245
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 180 KPEILKELVGIDSRLEKLR-FLIATESSD--VRMMGIWGMGGLGKTTLARVAYDLISHEF 236
+P+ L E +G + +KLR +L A ++ + + ++G GLGKTTLA V I+HE
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHV----IAHEL 62
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 180 KPEILKELVGIDSRLEKLR-FLIATESSD--VRMMGIWGMGGLGKTTLARVAYDLISHEF 236
+P+ L E +G + +KLR +L A ++ + + ++G GLGKTTLA V I+HE
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHV----IAHEL 62
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 180 KPEILKELVGIDSRLEKLR-FLIATESSD--VRMMGIWGMGGLGKTTLARVAYDLISHEF 236
+P+ L E +G + +KLR +L A ++ + + ++G GLGKTTLA V I+HE
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHV----IAHEL 62
>pdb|2CFC|A Chain A, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|B Chain B, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|C Chain C, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|D Chain D, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
Length = 250
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 521 HMLTENTLVILNLKDCTSLTTLPGKISMKSLKTLVLSGCLKLTKK-CLEFAGS 572
HML + VI+N+ SL PG+ + + K V L+LTK +++AGS
Sbjct: 128 HMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAV----LQLTKSVAVDYAGS 176
>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human
Tlr2
Length = 149
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 14 YDAFLSFRGEDTRKSFTDHLYAALKNKGIYVFK---DDKELEKGGSISPNLLEAIEESRI 70
YDAF+S+ D + ++L FK ++ G I N++++IE+S
Sbjct: 6 YDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHK 63
Query: 71 SIIVLSKNYASSTWCLDEL 89
++ VLS+N+ S W EL
Sbjct: 64 TVFVLSENFVKSEWXKYEL 82
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 132/317 (41%), Gaps = 40/317 (12%)
Query: 129 EEAFKDNIEKLQKWRDALKVVANKSGWELKDSNESEFIDEIVNVISNKIRTKPEIL---K 185
E +KD LQ L +V++ SG + D + F+ ++ + +P I K
Sbjct: 84 HEGYKDLAALLQS---GLPLVSSSSGKD-TDGGITSFVRTVL--CEGGVPQRPVIFVTRK 137
Query: 186 ELV-GIDSRLEKLRFLIATESSDVRMMGIWGMGGLGKTTLARVA---YDLISHEFDGSTF 241
+LV I +L KL + + + I+GM G GK+ LA A + L+ F G
Sbjct: 138 KLVHAIQQKLWKL-------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVH 190
Query: 242 LANVREKSEKEGXXXXXXXXXXXXXXXXXXXXXWNVD-----DGINIIGSRLRQKKVLLV 296
++ K +K G ++ D + ++ R + + LL+
Sbjct: 191 WVSIG-KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLR-KHPRSLLI 248
Query: 297 IDDVADVEQLQNLARKRDWFGPGSKIVITTRDKQLLVAHEVDEEHIYNLEV-LSNDEALQ 355
+DDV D L+ F +I++TT DK + + +H+ +E L ++ L+
Sbjct: 249 LDDVWDPWVLKA-------FDNQCQILLTTSDKS-VTDSVMGPKHVVPVESGLGREKGLE 300
Query: 356 LFSMKAFKTRQPMGEYVELSKRVLKYAGGLPLALTVLGSFLNGRSVDLWRSTLKRLKKEP 415
+ S+ ++ + + ++K G PL ++++G+ L + W L++L+ +
Sbjct: 301 ILSLFVNMKKEDLPAE---AHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQ 356
Query: 416 PNRIINILQISFDGLQD 432
RI ++ L +
Sbjct: 357 FKRIRKSSSYDYEALDE 373
>pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr2
Length = 149
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 14 YDAFLSFRGEDTRKSFTDHLYAALKNKGIYVFK---DDKELEKGGSISPNLLEAIEESRI 70
YDAF+S+ D + ++L FK ++ G I N++++IE+S
Sbjct: 6 YDAFVSYSERDA--YWVENLXVQELENFNPPFKLXLHKRDFIPGKWIIDNIIDSIEKSHK 63
Query: 71 SIIVLSKNYASSTWCLDEL 89
++ VLS+N+ S W EL
Sbjct: 64 TVFVLSENFVKSEWXKYEL 82
>pdb|3UWL|A Chain A, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
pdb|3UWL|C Chain C, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
Length = 315
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 17/127 (13%)
Query: 67 ESRISIIVLSKNYASSTWCLDELVKIVECKKRDHEIFPIFYDVEPTAVRKQTTSFGEAFA 126
++ I ++ N+ W + VK + + D F Q +F E +
Sbjct: 67 DTNIRYLLERNNHIWDEWAFERYVKSADYQGPDMTDF--------GHRVLQDPAFAEQYK 118
Query: 127 KHEEAFKDNIEKLQKWRDALKVVANKSG-----WELKDSNESEFIDEIVNVISNKIRTKP 181
+ + F D I ++ + + N G WE KD + FID++ NVI I+T P
Sbjct: 119 EEHQKFCDAILNDAEFAEKYGELGNIYGAQWRHWETKDGS---FIDQLANVIE-MIKTNP 174
Query: 182 EILKELV 188
+ + +V
Sbjct: 175 DSRRLIV 181
>pdb|3UWL|B Chain B, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
pdb|3UWL|D Chain D, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
Length = 315
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 17/127 (13%)
Query: 67 ESRISIIVLSKNYASSTWCLDELVKIVECKKRDHEIFPIFYDVEPTAVRKQTTSFGEAFA 126
++ I ++ N+ W + VK + + D F Q +F E +
Sbjct: 67 DTNIRYLLERNNHIWDEWAFERYVKSADYQGPDMTDF--------GHRVLQDPAFAEQYK 118
Query: 127 KHEEAFKDNIEKLQKWRDALKVVANKSG-----WELKDSNESEFIDEIVNVISNKIRTKP 181
+ + F D I ++ + + N G WE KD + FID++ NVI I+T P
Sbjct: 119 EEHQKFCDAILNDAEFAEKYGELGNIYGAQWRHWETKDGS---FIDQLANVIE-MIKTNP 174
Query: 182 EILKELV 188
+ + +V
Sbjct: 175 DSRRLIV 181
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 4/179 (2%)
Query: 569 FAGSMNDLSELFLDRTTIEELPL-SIQHLTGLVLLNLKDCKNLKSLSHTLRRLQCLKNLT 627
F+G +N L +L L++ + +P ++ HL GL++L L+ ++ +RL LK L
Sbjct: 148 FSG-LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206
Query: 628 LSGCSKLKKFPESLGSMKDLMELFLDGTSIAEVPS-SIEXXXXXXXXXXXXXXXXXXXPS 686
+S L + +L L + ++ VP ++ S
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266
Query: 687 CINGLRSLKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIF-VMNNLKTL 744
++ L L+ + L G P + L L++SG + S+F + NL+TL
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325
>pdb|2XU0|A Chain A, Crystal Structure Of The Nts-Dbl1(Alpha-1) Domain Of The
Plasmodium Falciparum Membrane Protein 1 (Pfemp1) From
The Varo Strain
Length = 487
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 105 IFYDVEPTAVRKQTTSFGEAFAKH-EEAFKDNIE---KLQKWRDALKVVANKSGWELKDS 160
IF D++ + Q + E K EE +K N++ ++QKW+ +K +E D
Sbjct: 364 IFVDLDCPRCQDQCIKYNEWIVKKLEEFYKQNLKYSMEIQKWKKTKNNYYDKEFYENLDK 423
Query: 161 NESEFIDEIVNVISN 175
ID+ +N+++N
Sbjct: 424 KSYSTIDKFLNLLNN 438
>pdb|2C4B|A Chain A, Inhibitor Cystine Knot Protein Mcoeeti Fused To The
Catalytically Inactive Barnase Mutant H102a
pdb|2C4B|B Chain B, Inhibitor Cystine Knot Protein Mcoeeti Fused To The
Catalytically Inactive Barnase Mutant H102a
Length = 143
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 492 QELGHQIVQRQSPEQPGKRSRIWRDEEVRHMLT-ENTLVILNLKDCTSLTTLPGKISMKS 550
+ +G I + + PGK R WR+ ++ + N+ IL D T +
Sbjct: 48 KSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSDWLIYKTTDAYQTFTK 107
Query: 551 LKTLVLSGCLKLTKKC 566
+++ + C K+ KKC
Sbjct: 108 IRSSSMGVCPKILKKC 123
>pdb|2YK0|A Chain A, Structure Of The N-Terminal Nts-Dbl1-Alpha And Cidr-Gamma
Double Domain Of The Pfemp1 Protein From Plasmodium
Falciparum Varo Strain
Length = 790
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 105 IFYDVEPTAVRKQTTSFGEAFAKH-EEAFKDNIE---KLQKWRDALKVVANKSGWELKDS 160
IF D++ + Q + E K EE +K N++ ++QKW+ +K +E D
Sbjct: 367 IFVDLDCPRCQDQCIKYNEWIVKKLEEFYKQNLKYSMEIQKWKKTKNNYYDKEFYENLDK 426
Query: 161 NESEFIDEIVNVISN 175
ID+ +N+++N
Sbjct: 427 KSYSTIDKFLNLLNN 441
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 68/169 (40%), Gaps = 35/169 (20%)
Query: 688 INGLRSLKTLNLSGCSKLQNVP-ETLGQVESLEELDISGTAIRRPPSSIFV--------- 737
NGL SL TL L ++L VP + + L EL + I PS F
Sbjct: 79 FNGLPSLNTLELFD-NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 738 -----------------MNNLKTLSFSGCN--GPPSSTSWHWHFPFNLMGQRSYPVALML 778
+ NL+ L+ CN P+ T+ L G R + L+
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNR---LDLIR 194
Query: 779 P-SLSGLHSLSKLDLSDCGLGEGAIPNDIGNLCSLKQLNLSQNNFVTLP 826
P S GL SL KL L + N +L SL++LNLS NN ++LP
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIE-RNAFDDLKSLEELNLSHNNLMSLP 242
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 694 LKTLNLSGCSKLQNVPETLGQVESLEELDISGTAIRRPPSSIF 736
+K L+L +K++++P+ + ++E+L+EL+++ ++ P IF
Sbjct: 423 IKVLDLHS-NKIKSIPKQVVKLEALQELNVASNQLKSVPDGIF 464
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,510,625
Number of Sequences: 62578
Number of extensions: 1304473
Number of successful extensions: 3229
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 3122
Number of HSP's gapped (non-prelim): 132
length of query: 1109
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1000
effective length of database: 8,152,335
effective search space: 8152335000
effective search space used: 8152335000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)